Citrus Sinensis ID: 011652
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 480 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FVX2 | 517 | Pentatricopeptide repeat- | yes | no | 0.970 | 0.901 | 0.735 | 0.0 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.945 | 0.890 | 0.404 | 1e-105 | |
| Q9SSR6 | 523 | Pentatricopeptide repeat- | no | no | 0.912 | 0.837 | 0.310 | 1e-65 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.870 | 0.655 | 0.321 | 7e-65 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.875 | 0.701 | 0.311 | 2e-64 | |
| Q9S7R4 | 482 | Pentatricopeptide repeat- | no | no | 0.895 | 0.892 | 0.318 | 6e-64 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.875 | 0.701 | 0.308 | 7e-64 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.875 | 0.702 | 0.308 | 1e-63 | |
| Q9LFQ4 | 572 | Pentatricopeptide repeat- | no | no | 0.814 | 0.683 | 0.325 | 4e-60 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.897 | 0.676 | 0.306 | 1e-59 |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/468 (73%), Positives = 410/468 (87%), Gaps = 2/468 (0%)
Query: 15 CISFL--RRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
C SFL R Y+SSE + D AK+ISK+++SSP++VLD+ALDQSG+RVS E+VEDVL +
Sbjct: 50 CKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNR 109
Query: 73 FRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE 132
FRNAG L + FF+W+EKQ++YEHSVRAYH MIES AKIRQY++MWDL+NAMR K+MLNVE
Sbjct: 110 FRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVE 169
Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
TFCI+MRKYAR QKV+EA+Y FNVM+KY + NL AFNGLLSALCKSKNVRKAQE+F+ M
Sbjct: 170 TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM 229
Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
+DRF PDSKTYSILLEGWGK+PNLP+ARE+FREM+D GC+PDIVTY IMVD+LCKAGRVD
Sbjct: 230 RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVD 289
Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
EALGIV+SMD ++C+PT+FIYSVLVHTYG ENR+E+AVDTFLEME++G+ ADVA++N+LI
Sbjct: 290 EALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLI 349
Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372
GAFCKAN+ KNVYRVLK+M SKGV PNS++CNIIL LI RGE DEA+ VFR+MIK+CE
Sbjct: 350 GAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEP 409
Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
DADTYTM+IKMFC+ E+E A KVWKYM+ K PSMHTFSVLINGLC++ +CVLL
Sbjct: 410 DADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLL 469
Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
E+MIE GIRPSG TFG+LR+LLIKE REDVLKFL EKMN+LV EPLCD
Sbjct: 470 EEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKMNVLVNEPLCD 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/460 (40%), Positives = 292/460 (63%), Gaps = 6/460 (1%)
Query: 23 NSSEPSTEALDA---AKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL 79
+S E A DA A+ I KI+ ++T L+++ +++SP ++E+VL+K NAG L
Sbjct: 51 SSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVL 110
Query: 80 AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139
A FKWAE Q+ ++H+ Y+++IESL KI+Q++++W LV+ M+ K++L+ ETF +I R
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISR 170
Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIP 198
+YAR +KV+EA+ F+ M+++G + FN +L L KS+NV AQ++FD MK RF P
Sbjct: 171 RYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEP 230
Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
D K+Y+ILLEGWG++ NL R E+ REM D G PD+V YGI+++ CKA + +EA+
Sbjct: 231 DIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFF 290
Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
M+ C+P+ I+ L++ G E ++ DA++ F + +G + YNAL+GA+C +
Sbjct: 291 NEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWS 350
Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378
+ ++ Y+ + +M KGV PN+RT +IIL+ LI + EAY V++ M CE TY
Sbjct: 351 QRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMS--CEPTVSTYE 408
Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
+M++MFC L+ A K+W MK K +P MH FS LI LC + + ++C +M++
Sbjct: 409 IMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDV 468
Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
GIRP G F +L++ L+ EGR+D + L KM+ L K L
Sbjct: 469 GIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDRLRKTQL 508
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 237/445 (53%), Gaps = 7/445 (1%)
Query: 33 DAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ 90
D IS+++ +PK L+ L RVS +VE VL++ +N G A FF WA +
Sbjct: 36 DLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARRI 95
Query: 91 QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET--FCIIMRKYARVQKVE 148
++ HS+ +YH ++E L +Q+ ++WD + R + + F I+ R Y+R
Sbjct: 96 PDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPS 155
Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILL 207
EA FN M ++G+ + + LL +LC K+V AQE F K +P +KTYSIL+
Sbjct: 156 EACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILV 215
Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
GW + + AR++F EM++ C D++ Y ++D LCK+G VD + + M + +
Sbjct: 216 RGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLK 275
Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
P ++ +++ +H Y + A M++ ++ +V +N +I CK K + Y +
Sbjct: 276 PDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLL 335
Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
L +M KG P++ T N I+ E + A ++ RM + C D TY M++K+ +
Sbjct: 336 LDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIR 395
Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC-DKGIVSDSCVLLEDMIEKGIRPSGE 445
G ++A ++W+ M ++F P++ T++V+I+GL KG + ++C E MI++GI P
Sbjct: 396 IGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYST 455
Query: 446 TFGKLRKLLIKEGREDVLKFLQEKM 470
T LR L+ G+ DV+ L KM
Sbjct: 456 TVEMLRNRLVGWGQMDVVDVLAGKM 480
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 136/423 (32%), Positives = 235/423 (55%), Gaps = 5/423 (1%)
Query: 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
L+ AL++SGI + P ++ VL + +AG L + FF WA KQ Y HS SM+ L+K
Sbjct: 84 LELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSK 143
Query: 110 IRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
+RQ+ +W L+ MR ++ E F ++MR++A V++AV + M KYG+ +
Sbjct: 144 MRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEY 203
Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227
F LL ALCK+ +V++A ++F+ M+++F P+ + ++ LL GW ++ L A+E+ +M
Sbjct: 204 VFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMK 263
Query: 228 DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY-GVENRI 286
+ G PDIV + ++ AG++ +A ++ M P Y+VL+ E R+
Sbjct: 264 EAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRM 323
Query: 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346
++A+ F+EME+ G AD+ Y ALI FCK Y VL DM KGV P+ T I
Sbjct: 324 DEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQI 383
Query: 347 LNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
+ + + +E + +M + C D Y ++I++ C+ GE+++A ++W M+
Sbjct: 384 MVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGL 443
Query: 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465
P + TF ++ING +G + ++C ++M+ +GI S +G L+ LL R+D L+
Sbjct: 444 SPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIF-SAPQYGTLKSLLNNLVRDDKLEM 502
Query: 466 LQE 468
++
Sbjct: 503 AKD 505
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/421 (31%), Positives = 239/421 (56%), Gaps = 1/421 (0%)
Query: 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
++ LD+ + +S +++ +VLE+FR+A AF FF WA ++Q + H R Y+SM+ LAK
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 207
Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
RQ++ M ++ M TK +L +ETF I M+ +A ++ ++AV F +M+KY +
Sbjct: 208 TRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETI 267
Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
N LL +L ++K ++AQ +FD +K+RF P+ TY++LL GW + NL A I+ +M+D
Sbjct: 268 NCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQ 327
Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
G PDIV + +M++ L ++ + +A+ + M S P Y++++ + ++ +E A
Sbjct: 328 GLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 387
Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
++ F +M +G+ D A+Y LI F K VY +LK+M KG P+ +T N ++
Sbjct: 388 IEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKL 447
Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
+ + + A R++ +MI+ E T+ M++K + E VW+ M K P
Sbjct: 448 MANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPD 507
Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
++++VLI GL +G ++C LE+M++KG++ + K + G+ ++ + L +
Sbjct: 508 DNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQ 567
Query: 469 K 469
+
Sbjct: 568 R 568
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 140/439 (31%), Positives = 234/439 (53%), Gaps = 9/439 (2%)
Query: 35 AKSISKIMLSSPKVVLDT---ALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ 91
+ +I+K++LSSP L +P +V VL++ N G A FF + +
Sbjct: 25 SAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHH 84
Query: 92 -NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEE 149
Y H ++ I+ A++ + +W L++ MR+ R+ + +TF I+ +YA K ++
Sbjct: 85 REYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDK 144
Query: 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209
AV F M ++G Q+LA+FN +L LCKSK V KA E+F ++ RF D+ TY+++L G
Sbjct: 145 AVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNG 204
Query: 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269
W P+A E+ +EMV+ G NP++ TY M+ +AG++ A M C
Sbjct: 205 WCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID 264
Query: 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329
Y+ +VH +GV I+ A + F EM + G+L VA YNA+I CK + +N + +
Sbjct: 265 VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFE 324
Query: 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM-IKLCEADADTYTMMIKMFCQGG 388
+M +G PN T N+++ GL GE + +RM + CE + TY MMI+ + +
Sbjct: 325 EMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECS 384
Query: 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV---LLEDMIEKGIRPSGE 445
E+EKA +++ M +P++ T+++LI+G+ + D V LL +M+E+G P
Sbjct: 385 EVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKF 444
Query: 446 TFGKLRKLLIKEGREDVLK 464
TF ++ L+ G + K
Sbjct: 445 TFNRVLNGLLLTGNQAFAK 463
|
Required for the trans-splicing of intron 1 of the mitochondrial nad1 transcript encoding the ND1 subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 130/421 (30%), Positives = 238/421 (56%), Gaps = 1/421 (0%)
Query: 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
++ LD+ + +S +++ +VLE+FR+A AF FF WA ++Q + H+ R Y+SM+ LAK
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAK 207
Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
RQ++ M ++ M TK +L +ETF I M+ +A ++ ++AV F +M+KY +
Sbjct: 208 TRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETI 267
Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
N LL +L ++K ++AQ +FD +K+RF P+ TY++LL GW + NL A I+ +M+D
Sbjct: 268 NCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDH 327
Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
G PDIV + +M++ L ++ + +A+ + M S P Y++++ + ++ +E A
Sbjct: 328 GLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 387
Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
++ F +M +G+ D A+Y LI F K VY +LK+M KG P+ +T N ++
Sbjct: 388 IEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKL 447
Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
+ + + R++ +MI+ E T+ M++K + E VW M K P
Sbjct: 448 MANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPD 507
Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
++++VLI GL +G ++C LE+M++KG++ + K + G+ ++ + L +
Sbjct: 508 DNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQ 567
Query: 469 K 469
+
Sbjct: 568 R 568
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/421 (30%), Positives = 237/421 (56%), Gaps = 1/421 (0%)
Query: 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
++ LD+ + +S +++ +VLE+FR+A AF FF WA ++Q + H R Y+SM+ LAK
Sbjct: 147 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 206
Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
RQ++ M ++ M TK +L +ETF I M+ +A ++ ++AV F +M+KY +
Sbjct: 207 TRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETI 266
Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
N LL +L ++K ++AQ +FD +K+RF P+ TY++LL GW + NL A I+ +M+D
Sbjct: 267 NCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDH 326
Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
G PDIV + +M++ L ++ + +A+ + M S P Y++++ + ++ +E A
Sbjct: 327 GLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 386
Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
++ F +M +G+ D A+Y LI F K VY +LK+M KG P+ +T N ++
Sbjct: 387 IEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKL 446
Query: 350 LIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
+ + + R++ +MI+ E T+ M++K + E VW M K P
Sbjct: 447 MANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPD 506
Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
++++VLI GL +G ++C LE+M++KG++ + K + G+ ++ + L +
Sbjct: 507 DNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQ 566
Query: 469 K 469
+
Sbjct: 567 R 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 233 bits (593), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/399 (32%), Positives = 218/399 (54%), Gaps = 8/399 (2%)
Query: 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
L L++ ++ S E+V ++L + RN AF FF WA KQQ Y SVR YHSMI L K
Sbjct: 114 LRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGK 173
Query: 110 IRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167
+R++ W L++ MR + ++N +T I++RKY V V +A+ TF+ +++ + +
Sbjct: 174 MRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGID 233
Query: 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR-AREIFREM 226
F LLSALC+ KNV A + C KD++ D+K+++I+L GW PR A ++ EM
Sbjct: 234 DFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWMEM 293
Query: 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286
+ G D+V+Y M+ K G +++ L + M P +Y+ +VH + +
Sbjct: 294 GNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFV 353
Query: 287 EDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345
+A + ME+ GI +V YN+LI CKA K + +V +M KG+ P RT +
Sbjct: 354 SEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHA 413
Query: 346 ILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404
+ ++ GE E + + +M K+ CE +TY M+I+ C+ + + +W MK K
Sbjct: 414 FMR-ILRTGE--EVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKT 470
Query: 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443
P + ++ V+I+GL G + ++ ++M +KG+RP+
Sbjct: 471 VGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPN 509
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/440 (30%), Positives = 240/440 (54%), Gaps = 9/440 (2%)
Query: 21 RYNSSEPSTEALDAAKS---ISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
R +S+ A D KS + K PK L+ AL++SG+ + P ++E VL + +AG
Sbjct: 70 RTKNSKYDEFASDVEKSYRILRKFHSRVPK--LELALNESGVELRPGLIERVLNRCGDAG 127
Query: 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK--RMLNVETFC 135
L + FF WA KQ Y HS+ Y SM++ L+K+RQ+ +W L+ MR + +++ E F
Sbjct: 128 NLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFV 187
Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
++++++A V++A+ + M K+G + F LL ALCK +V+ A ++F+ M+ R
Sbjct: 188 VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR 247
Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
F + + ++ LL GW + + A+ + +M + G PDIV Y ++ AG++ +A
Sbjct: 248 FPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAY 307
Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
+++ M P + Y+VL+ +R+E+A+ F+EME+ ADV Y AL+ F
Sbjct: 308 DLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGF 367
Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
CK K Y VL DM KG+ P+ T I+ + +E + +M ++ D
Sbjct: 368 CKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDI 427
Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
Y ++I++ C+ GE+++A ++W M+ P + TF ++INGL +G + ++ ++
Sbjct: 428 GIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKE 487
Query: 435 MIEKGIRPSGETFGKLRKLL 454
M+ +G+ S +G L+ LL
Sbjct: 488 MVTRGLF-SVSQYGTLKLLL 506
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 480 | ||||||
| 255558584 | 439 | pentatricopeptide repeat-containing prot | 0.914 | 1.0 | 0.810 | 0.0 | |
| 359492357 | 476 | PREDICTED: pentatricopeptide repeat-cont | 0.954 | 0.962 | 0.772 | 0.0 | |
| 224084978 | 440 | predicted protein [Populus trichocarpa] | 0.914 | 0.997 | 0.799 | 0.0 | |
| 11079489 | 481 | hypothetical protein [Arabidopsis thalia | 0.970 | 0.968 | 0.735 | 0.0 | |
| 334183972 | 517 | pentatricopeptide repeat-containing prot | 0.970 | 0.901 | 0.735 | 0.0 | |
| 297842515 | 482 | pentatricopeptide repeat-containing prot | 1.0 | 0.995 | 0.712 | 0.0 | |
| 449463418 | 439 | PREDICTED: pentatricopeptide repeat-cont | 0.914 | 1.0 | 0.776 | 0.0 | |
| 356515931 | 461 | PREDICTED: pentatricopeptide repeat-cont | 0.933 | 0.971 | 0.747 | 0.0 | |
| 357114607 | 486 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.975 | 0.644 | 0.0 | |
| 115455503 | 484 | Os03g0761300 [Oryza sativa Japonica Grou | 0.964 | 0.956 | 0.655 | 0.0 |
| >gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/439 (81%), Positives = 395/439 (89%)
Query: 42 MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYH 101
M+SSP V L TALDQ+GIRVSPEIVEDVL +F NAG +A+ FF+WAEKQ +Y HSVRAYH
Sbjct: 1 MMSSPAVTLHTALDQNGIRVSPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYH 60
Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
+MIESLAKIRQYQIMWDL+NAM+ KRMLNVETFCIIMRKYAR QK+EEAVYTFNVM+KY
Sbjct: 61 TMIESLAKIRQYQIMWDLINAMKRKRMLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYD 120
Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
V NLAAFNGL SALCKSKNVRKAQEIFD KDRF+PDSKTY+ILLEGWGK PNLP+ARE
Sbjct: 121 VPPNLAAFNGLFSALCKSKNVRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKARE 180
Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
IFREMVD GC+PDIVTYGIMVD+LCKAGRVDEAL IVK MD T+C+PTSFIYSVL+HTYG
Sbjct: 181 IFREMVDVGCSPDIVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYG 240
Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
+ENRIEDAVDTFL MEKNG+ ADVA YNALIGAFCK NKFKNVYRVL +M+ KG+ PNSR
Sbjct: 241 IENRIEDAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSR 300
Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
T NIILN LI RGETDEA+RVFRRMIK+CE DADTYTMMIKMFC+ ELE A KVWKYMK
Sbjct: 301 TLNIILNNLIARGETDEAFRVFRRMIKVCEPDADTYTMMIKMFCERNELEMALKVWKYMK 360
Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
K F+PSMHTFSVLINGLC++G VS +CV+LEDMIEKGIRPSG TFG+LR LLIKEGRED
Sbjct: 361 KKHFVPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIKEGRED 420
Query: 462 VLKFLQEKMNLLVKEPLCD 480
VL+FLQ+K+N+L+KEPL D
Sbjct: 421 VLEFLQQKINVLIKEPLWD 439
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/458 (77%), Positives = 404/458 (88%)
Query: 23 NSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFC 82
+S E E D K I KIM+S PK+ LDT+L +SGIRVSP +VE+VL++F NAG LA+
Sbjct: 3 SSGEIIKETADPTKRICKIMISCPKLELDTSLSESGIRVSPIVVENVLKRFENAGMLAYQ 62
Query: 83 FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA 142
FF+WA KQ+NY HS+RAYH+MIESLAKIRQYQIMWDLVN MR+ ++LNVETFCIIMRKYA
Sbjct: 63 FFEWAGKQRNYTHSIRAYHTMIESLAKIRQYQIMWDLVNKMRSLKILNVETFCIIMRKYA 122
Query: 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT 202
R QKV+EAVYTFN+M+KY V NLAAFN LLSALCKSKNV KAQEIF+ MKD+FIPDSKT
Sbjct: 123 RSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIPDSKT 182
Query: 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262
YSILLEGWGK PNLP+AREIFREMVD GC+PDIVTYGIMVD+LCKAGRVDEA+GIVK MD
Sbjct: 183 YSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEMD 242
Query: 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322
S+VC+PTSFIYSVLVHTYG+ENRIEDAV TFL+ME+N I ADVA+YNALIGAFCK NK K
Sbjct: 243 SSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLK 302
Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382
N YRVL +M+ KG+ PNSRTCNIILN LI G+TDEA+RVFRRMIK+C+ DADTYTMMIK
Sbjct: 303 NAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIKVCDPDADTYTMMIK 362
Query: 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442
MFC+ +LE A KVWKYM+LK+F+PSMHTFSVLINGLC KG S +C+LLE+MIEKGIRP
Sbjct: 363 MFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRP 422
Query: 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
S TFGKL++LLIKEGREDVL+FLQEKMNLLVKEPLCD
Sbjct: 423 SSVTFGKLKQLLIKEGREDVLEFLQEKMNLLVKEPLCD 460
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/439 (79%), Positives = 396/439 (90%)
Query: 42 MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYH 101
M+SS V LDTALDQSG+RVS +IVEDVL+KF NAG +A+ FF+WAEKQ++Y HSV+A+H
Sbjct: 1 MMSSSVVTLDTALDQSGVRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFH 60
Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
++I+SLAKIRQYQ+MWD+V M++KRM+NVETFCIIMRKYAR QKVEEAVYTFN+M KY
Sbjct: 61 TVIDSLAKIRQYQLMWDVVKVMKSKRMVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYD 120
Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
V NLAAFNGLLSALCKSKNVRKAQEIFD +KDRF+PDSKTYSILLEGWGKDPNLP+ARE
Sbjct: 121 VPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKARE 180
Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
IFREMV GC PDIVTYGIMVDVLCKAGRVDEALGIV MDSTVC+PT FIYSVLVHTYG
Sbjct: 181 IFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYG 240
Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
+ENRIEDAV TFLEME NGI DVA+YNALIGAFCKAN+ KNVYRVL +M+ KGV PNSR
Sbjct: 241 IENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSR 300
Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
T NIIL+ LIGRGETDEAYRVF RMIK+CE DADTYTMMIKMFC+ EL+KA KVWKYMK
Sbjct: 301 TFNIILSSLIGRGETDEAYRVFLRMIKVCEPDADTYTMMIKMFCERDELKKALKVWKYMK 360
Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
LKRF+PSMHTF VLINGLC+KG V+ +CVLLE+MIEKGIRPSG TFG+LR+LLIKEGRED
Sbjct: 361 LKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGRED 420
Query: 462 VLKFLQEKMNLLVKEPLCD 480
VLKFLQ+K+N+LV +PL +
Sbjct: 421 VLKFLQKKINVLVNDPLWE 439
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/468 (73%), Positives = 410/468 (87%), Gaps = 2/468 (0%)
Query: 15 CISFL--RRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
C SFL R Y+SSE + D AK+ISK+++SSP++VLD+ALDQSG+RVS E+VEDVL +
Sbjct: 14 CKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNR 73
Query: 73 FRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE 132
FRNAG L + FF+W+EKQ++YEHSVRAYH MIES AKIRQY++MWDL+NAMR K+MLNVE
Sbjct: 74 FRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVE 133
Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
TFCI+MRKYAR QKV+EA+Y FNVM+KY + NL AFNGLLSALCKSKNVRKAQE+F+ M
Sbjct: 134 TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM 193
Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
+DRF PDSKTYSILLEGWGK+PNLP+ARE+FREM+D GC+PDIVTY IMVD+LCKAGRVD
Sbjct: 194 RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVD 253
Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
EALGIV+SMD ++C+PT+FIYSVLVHTYG ENR+E+AVDTFLEME++G+ ADVA++N+LI
Sbjct: 254 EALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLI 313
Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372
GAFCKAN+ KNVYRVLK+M SKGV PNS++CNIIL LI RGE DEA+ VFR+MIK+CE
Sbjct: 314 GAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEP 373
Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
DADTYTM+IKMFC+ E+E A KVWKYM+ K PSMHTFSVLINGLC++ +CVLL
Sbjct: 374 DADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLL 433
Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
E+MIE GIRPSG TFG+LR+LLIKE REDVLKFL EKMN+LV EPLCD
Sbjct: 434 EEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKMNVLVNEPLCD 481
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77360, mitochondrial; Flags: Precursor gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/468 (73%), Positives = 410/468 (87%), Gaps = 2/468 (0%)
Query: 15 CISFL--RRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEK 72
C SFL R Y+SSE + D AK+ISK+++SSP++VLD+ALDQSG+RVS E+VEDVL +
Sbjct: 50 CKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNR 109
Query: 73 FRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVE 132
FRNAG L + FF+W+EKQ++YEHSVRAYH MIES AKIRQY++MWDL+NAMR K+MLNVE
Sbjct: 110 FRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVE 169
Query: 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192
TFCI+MRKYAR QKV+EA+Y FNVM+KY + NL AFNGLLSALCKSKNVRKAQE+F+ M
Sbjct: 170 TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENM 229
Query: 193 KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252
+DRF PDSKTYSILLEGWGK+PNLP+ARE+FREM+D GC+PDIVTY IMVD+LCKAGRVD
Sbjct: 230 RDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVD 289
Query: 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312
EALGIV+SMD ++C+PT+FIYSVLVHTYG ENR+E+AVDTFLEME++G+ ADVA++N+LI
Sbjct: 290 EALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLI 349
Query: 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372
GAFCKAN+ KNVYRVLK+M SKGV PNS++CNIIL LI RGE DEA+ VFR+MIK+CE
Sbjct: 350 GAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEP 409
Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
DADTYTM+IKMFC+ E+E A KVWKYM+ K PSMHTFSVLINGLC++ +CVLL
Sbjct: 410 DADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLL 469
Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
E+MIE GIRPSG TFG+LR+LLIKE REDVLKFL EKMN+LV EPLCD
Sbjct: 470 EEMIEMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEKMNVLVNEPLCD 517
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/480 (71%), Positives = 413/480 (86%)
Query: 1 MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIR 60
MI++ + ++++ S R Y+SSE + D AK+ISK+++SSP++V+D+ALDQSG+R
Sbjct: 3 MIRILNRQSRLCSKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVIDSALDQSGLR 62
Query: 61 VSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLV 120
VSPE+VEDVL +FRNAG LA+ FF+W+EKQ++YEHSVRAYH MIES AKIRQY++MWDL+
Sbjct: 63 VSPEVVEDVLYRFRNAGLLAYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLI 122
Query: 121 NAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180
NAM K+MLNVETFCI+MRKYAR QKV+EA+Y FNVM+KY + NL AFNGLLSALCKSK
Sbjct: 123 NAMMKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSK 182
Query: 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240
NVRKAQEIF+ M+DRF PDSKTYSILLEGWGK+PNLP+ARE+FREMVD G PDIVTY I
Sbjct: 183 NVRKAQEIFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYSI 242
Query: 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300
MVD+LCKAGRVDEALGIV+SMD ++C+PT+FIYSVLVHTYG E R+E+AVDTFLEME++G
Sbjct: 243 MVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERSG 302
Query: 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360
+ ADVA++N+LIGAFCK N+ KNVYRVLK+M SKGV PNS++CNIIL LI RGE DEA+
Sbjct: 303 MKADVAVFNSLIGAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIDRGEKDEAF 362
Query: 361 RVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420
VFR+MIK+CE DADTYTMMIKMFC+ E+E A KVWKYM+ K PSMHTFSVLINGLC
Sbjct: 363 DVFRKMIKVCEPDADTYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLC 422
Query: 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
++ +CVLLE+MIE GIRPSG TFG+LR+LL+KE REDVLKFL EKMN+LV EPLCD
Sbjct: 423 EEPNTQKACVLLEEMIEMGIRPSGATFGRLRQLLLKEDREDVLKFLNEKMNVLVNEPLCD 482
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Cucumis sativus] gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/439 (77%), Positives = 388/439 (88%)
Query: 42 MLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYH 101
M++ + L+TALDQ+GIR+SPEI E VL +F NAG LA+ FF+WA KQ+NY HSVRAYH
Sbjct: 1 MMTCHTLALETALDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYH 60
Query: 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161
SMIESLAKIRQYQ++WDLVNAMR K +LNVE FCIIMRKYAR QKVEEAVYTFNVM+KY
Sbjct: 61 SMIESLAKIRQYQMVWDLVNAMRNKEILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYN 120
Query: 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221
+ N+AAFNGLLSALCKSKNVRKAQEIFD MKD+F+PDSKTYSIL+EGWG+ PNLP+ARE
Sbjct: 121 MKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKARE 180
Query: 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYG 281
I+REM+D+GC PD VTY IMVDVLCKAGRVDEA+ IVK MD C+P+SFIYSVLVHTYG
Sbjct: 181 IYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYG 240
Query: 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341
VENRIEDAV TFLEME+NG++ADVA YNALI AFCKANK KNVYRVLKDM+ KGV PNSR
Sbjct: 241 VENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSR 300
Query: 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
TCNII+N LIGRGETDEA+++FRRMIK+CE D D+YTM+IKMFC EL+ A K+WKYMK
Sbjct: 301 TCNIIINSLIGRGETDEAFKIFRRMIKVCEPDVDSYTMIIKMFCGRKELDMALKIWKYMK 360
Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
K+F+PSMHTFSVLINGLC G + +CVLLE+MIEKGIRPSG TFG+LR LLIKEGR+D
Sbjct: 361 KKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGRKD 420
Query: 462 VLKFLQEKMNLLVKEPLCD 480
VLKFLQEKMNLLVKEPLCD
Sbjct: 421 VLKFLQEKMNLLVKEPLCD 439
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/448 (74%), Positives = 390/448 (87%)
Query: 33 DAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQN 92
+A++ + K+M++ P + LDTAL+Q+G+RVSP++VE+VL++F NAG AF FF+WAEKQ+
Sbjct: 14 EASERVCKVMMTCPTLGLDTALNQTGVRVSPDLVENVLKRFENAGMPAFRFFEWAEKQRG 73
Query: 93 YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVY 152
Y HS+RAYH MIESLAKIRQYQI+WDLV+AMR K MLNVETFCI+MRKYAR KV+EAVY
Sbjct: 74 YSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVETFCIMMRKYARANKVDEAVY 133
Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212
TFNVM KY V NLAAFNGLLSALCKS NVRKAQEIFD MK +F+PD K+YSILLEGWGK
Sbjct: 134 TFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVPDEKSYSILLEGWGK 193
Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272
PNLPRARE+FREMV+ GC+PD+VTYGIMVDVLCKAGRVDEA+ +VK MD CRPTSFI
Sbjct: 194 APNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFI 253
Query: 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332
YSVLVHTYGVE+RIEDA+DTFLEM K GI ADV YNALIGAFCK NKFKNV+RVLK+M
Sbjct: 254 YSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEME 313
Query: 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392
S GVAPNSRTCN+I++ +IG+G+TD A+RVF RMIKLCE DADTYTMMIKMFC+ ELE
Sbjct: 314 SNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKLCEPDADTYTMMIKMFCEKNELEM 373
Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452
A K+WKYMK K+F+PSMHTFS LI GLC+K + +CV++E+MIEKGIRPS TFG+LR+
Sbjct: 374 ALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITFGRLRQ 433
Query: 453 LLIKEGREDVLKFLQEKMNLLVKEPLCD 480
LLIKEGREDVLKFL EKMNLLVKEPL D
Sbjct: 434 LLIKEGREDVLKFLHEKMNLLVKEPLYD 461
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/481 (64%), Positives = 382/481 (79%), Gaps = 7/481 (1%)
Query: 7 SRNKMISGCISFLRRYNS----SEPSTEALDAAKSISKIMLSSPKVV-LDTALDQSGIRV 61
SR+ + F+R + S S+ + ++ D AK + K+++S K L+ LD S +RV
Sbjct: 6 SRHTSMEARKVFVRMFTSGVGGSDVAVDSFDPAKRLCKLIISCQKASGLELELDHSDLRV 65
Query: 62 SPEIVEDVLEKFRNAGTLAFCFFKWAEKQQ--NYEHSVRAYHSMIESLAKIRQYQIMWDL 119
+P++ E VLE+ NAG LA+ FF+WA KQ+ H++R+YH+++ SLAKIRQYQ+MWD+
Sbjct: 66 TPDVAERVLERLDNAGMLAYRFFEWARKQKRGGCNHTIRSYHTVVASLAKIRQYQLMWDV 125
Query: 120 VNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179
V MR + ++NVETF IIMRKYAR QK +EAVYTFN+M+KYGV NLAAFN LL ALCKS
Sbjct: 126 VAIMRREGVVNVETFGIIMRKYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKS 185
Query: 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239
KNVRKAQEIFD M RF PD+KTYSILLEGWGK PNLP+ RE++ EM+D GC PDIVTYG
Sbjct: 186 KNVRKAQEIFDKMNGRFNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYG 245
Query: 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299
IMVD LCK GRV+EA+ +V+ M S C+PT+FIYSVLVHTYGVE RIEDAV TFL+MEK+
Sbjct: 246 IMVDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKD 305
Query: 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359
GI+ DV +YNAL+ AFCK KF+N +RV+ DM G+APNSRT NIILN LI G+ DEA
Sbjct: 306 GIVPDVVVYNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEA 365
Query: 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419
YRVFRRMIK C+ D+DTYTMMIKMFC+ +E A KVWKYM+LK+F+PSMHTFSVLINGL
Sbjct: 366 YRVFRRMIKRCQPDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFSVLINGL 425
Query: 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLC 479
CDKG VS +CVLLEDMIEKGIRP G TFGKLR+LL+KEGR+DVL+FL +KM +L++EPL
Sbjct: 426 CDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLEFLVDKMKILIQEPLF 485
Query: 480 D 480
D
Sbjct: 486 D 486
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group] gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group] gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group] gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group] gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/470 (65%), Positives = 374/470 (79%), Gaps = 7/470 (1%)
Query: 18 FLRRYNSSEPSTEAL----DAAKSISKIMLSSPKV-VLDTALDQSGIRVSPEIVEDVLEK 72
F+R +S +AL D AK + K+++S K ++ LD SG+RV+P++ E VLE+
Sbjct: 15 FVRMLSSGVGGGDALVDTADPAKRLFKLIISCRKASAVEHELDHSGVRVTPDVAERVLER 74
Query: 73 FRNAGTLAFCFFKWAEKQQ--NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN 130
NAG LA+ FF+WA +Q+ H+VR+YH+++ SLAKIRQYQ+MWD+V MR + +N
Sbjct: 75 LDNAGMLAYRFFEWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRREGAVN 134
Query: 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190
VETF IIMRKYAR QKV+EAVYTFNVM+KYGV NLAAFN LL ALCKSKNVRKAQEIFD
Sbjct: 135 VETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFD 194
Query: 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
M RF PD+KTYSILLEGWG+ PNLP+ RE++ EM+D GC PDIVTYGIMVD LCK GR
Sbjct: 195 KMNSRFSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGR 254
Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
V+EA+ +V+ M S C+PT++IYSVLVHTYGVE RIEDAV TFL+MEK+GI+ D+ +YNA
Sbjct: 255 VEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNA 314
Query: 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370
L+ AFCKA KF+N +RVL DM G+ NSRT NIILN LI G DEAY+VFRRMIK C
Sbjct: 315 LVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKCC 374
Query: 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430
+ D DTYTMMIKMFC+ ++E A KVWKYM+LK+F+PSMHTFSVLINGLCDK VS +CV
Sbjct: 375 QPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACV 434
Query: 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
LLEDMIEKGIRP G TFGKLR+LL+KEGR+DVL FL EKMN+L++EPL D
Sbjct: 435 LLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMNILIQEPLFD 484
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 480 | ||||||
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.945 | 0.890 | 0.404 | 1.4e-96 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.875 | 0.658 | 0.323 | 8.8e-63 | |
| TAIR|locus:2035206 | 523 | AT1G52640 [Arabidopsis thalian | 0.912 | 0.837 | 0.310 | 1.6e-61 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.875 | 0.701 | 0.311 | 2.7e-61 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.875 | 0.701 | 0.308 | 1.9e-60 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.875 | 0.702 | 0.308 | 2.4e-60 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.952 | 0.717 | 0.293 | 9.3e-59 | |
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.904 | 0.808 | 0.305 | 3.6e-57 | |
| TAIR|locus:2094394 | 562 | AT3G22670 [Arabidopsis thalian | 0.883 | 0.754 | 0.283 | 4.9e-53 | |
| TAIR|locus:2083671 | 523 | AT3G15200 [Arabidopsis thalian | 0.945 | 0.868 | 0.282 | 2.8e-50 |
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
Identities = 186/460 (40%), Positives = 292/460 (63%)
Query: 23 NSSEPSTEALDA---AKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTL 79
+S E A DA A+ I KI+ ++T L+++ +++SP ++E+VL+K NAG L
Sbjct: 51 SSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVL 110
Query: 80 AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139
A FKWAE Q+ ++H+ Y+++IESL KI+Q++++W LV+ M+ K++L+ ETF +I R
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISR 170
Query: 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIP 198
+YAR +KV+EA+ F+ M+++G + FN +L L KS+NV AQ++FD MK RF P
Sbjct: 171 RYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEP 230
Query: 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
D K+Y+ILLEGWG++ NL R E+ REM D G PD+V YGI+++ CKA + +EA+
Sbjct: 231 DIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFF 290
Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
M+ C+P+ I+ L++ G E ++ DA++ F + +G + YNAL+GA+C +
Sbjct: 291 NEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWS 350
Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378
+ ++ Y+ + +M KGV PN+RT +IIL+ LI + EAY V++ M CE TY
Sbjct: 351 QRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMS--CEPTVSTYE 408
Query: 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438
+M++MFC L+ A K+W MK K +P MH FS LI LC + + ++C +M++
Sbjct: 409 IMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDV 468
Query: 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
GIRP G F +L++ L+ EGR+D + L KM+ L K L
Sbjct: 469 GIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDRLRKTQL 508
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 138/427 (32%), Positives = 237/427 (55%)
Query: 46 PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIE 105
PK L+ AL++SGI + P ++ VL + +AG L + FF WA KQ Y HS SM+
Sbjct: 82 PK--LELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVM 139
Query: 106 SLAKIRQYQIMWDLVNAMR--TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT 163
L+K+RQ+ +W L+ MR ++ E F ++MR++A V++AV + M KYG+
Sbjct: 140 ILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLE 199
Query: 164 QNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223
+ F LL ALCK+ +V++A ++F+ M+++F P+ + ++ LL GW ++ L A+E+
Sbjct: 200 PDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVL 259
Query: 224 REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY-GV 282
+M + G PDIV + ++ AG++ +A ++ M P Y+VL+
Sbjct: 260 VQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRT 319
Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342
E R+++A+ F+EME+ G AD+ Y ALI FCK Y VL DM KGV P+ T
Sbjct: 320 EKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVT 379
Query: 343 CNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
I+ + + +E + +M + C D Y ++I++ C+ GE+++A ++W M+
Sbjct: 380 YMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEME 439
Query: 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGRED 461
P + TF ++ING +G + ++C ++M+ +GI S +G L+ LL R+D
Sbjct: 440 ANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIF-SAPQYGTLKSLLNNLVRDD 498
Query: 462 VLKFLQE 468
L+ ++
Sbjct: 499 KLEMAKD 505
|
|
| TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 138/445 (31%), Positives = 237/445 (53%)
Query: 33 DAAKSISKIMLS--SPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQ 90
D IS+++ +PK L+ L RVS +VE VL++ +N G A FF WA +
Sbjct: 36 DLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARRI 95
Query: 91 QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVET--FCIIMRKYARVQKVE 148
++ HS+ +YH ++E L +Q+ ++WD + R + + F I+ R Y+R
Sbjct: 96 PDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPS 155
Query: 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILL 207
EA FN M ++G+ + + LL +LC K+V AQE F K +P +KTYSIL+
Sbjct: 156 EACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILV 215
Query: 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267
GW + + AR++F EM++ C D++ Y ++D LCK+G VD + + M + +
Sbjct: 216 RGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLK 275
Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327
P ++ +++ +H Y + A M++ ++ +V +N +I CK K + Y +
Sbjct: 276 PDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLL 335
Query: 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
L +M KG P++ T N I+ E + A ++ RM + C D TY M++K+ +
Sbjct: 336 LDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIR 395
Query: 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC-DKGIVSDSCVLLEDMIEKGIRPSGE 445
G ++A ++W+ M ++F P++ T++V+I+GL KG + ++C E MI++GI P
Sbjct: 396 IGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYST 455
Query: 446 TFGKLRKLLIKEGREDVLKFLQEKM 470
T LR L+ G+ DV+ L KM
Sbjct: 456 TVEMLRNRLVGWGQMDVVDVLAGKM 480
|
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| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 131/421 (31%), Positives = 239/421 (56%)
Query: 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
++ LD+ + +S +++ +VLE+FR+A AF FF WA ++Q + H R Y+SM+ LAK
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 207
Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
RQ++ M ++ M TK +L +ETF I M+ +A ++ ++AV F +M+KY +
Sbjct: 208 TRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETI 267
Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
N LL +L ++K ++AQ +FD +K+RF P+ TY++LL GW + NL A I+ +M+D
Sbjct: 268 NCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQ 327
Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
G PDIV + +M++ L ++ + +A+ + M S P Y++++ + ++ +E A
Sbjct: 328 GLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 387
Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
++ F +M +G+ D A+Y LI F K VY +LK+M KG P+ +T N ++
Sbjct: 388 IEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKL 447
Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
+ + + A R++ +MI+ E T+ M++K + E VW+ M K P
Sbjct: 448 MANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPD 507
Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
++++VLI GL +G ++C LE+M++KG++ + K + G+ ++ + L +
Sbjct: 508 DNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQ 567
Query: 469 K 469
+
Sbjct: 568 R 568
|
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| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 130/421 (30%), Positives = 238/421 (56%)
Query: 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
++ LD+ + +S +++ +VLE+FR+A AF FF WA ++Q + H+ R Y+SM+ LAK
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAK 207
Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
RQ++ M ++ M TK +L +ETF I M+ +A ++ ++AV F +M+KY +
Sbjct: 208 TRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETI 267
Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
N LL +L ++K ++AQ +FD +K+RF P+ TY++LL GW + NL A I+ +M+D
Sbjct: 268 NCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDH 327
Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
G PDIV + +M++ L ++ + +A+ + M S P Y++++ + ++ +E A
Sbjct: 328 GLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 387
Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
++ F +M +G+ D A+Y LI F K VY +LK+M KG P+ +T N ++
Sbjct: 388 IEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKL 447
Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
+ + + R++ +MI+ E T+ M++K + E VW M K P
Sbjct: 448 MANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPD 507
Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
++++VLI GL +G ++C LE+M++KG++ + K + G+ ++ + L +
Sbjct: 508 DNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQ 567
Query: 469 K 469
+
Sbjct: 568 R 568
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| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 130/421 (30%), Positives = 237/421 (56%)
Query: 50 LDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAK 109
++ LD+ + +S +++ +VLE+FR+A AF FF WA ++Q + H R Y+SM+ LAK
Sbjct: 147 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 206
Query: 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF 169
RQ++ M ++ M TK +L +ETF I M+ +A ++ ++AV F +M+KY +
Sbjct: 207 TRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETI 266
Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
N LL +L ++K ++AQ +FD +K+RF P+ TY++LL GW + NL A I+ +M+D
Sbjct: 267 NCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDH 326
Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
G PDIV + +M++ L ++ + +A+ + M S P Y++++ + ++ +E A
Sbjct: 327 GLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETA 386
Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
++ F +M +G+ D A+Y LI F K VY +LK+M KG P+ +T N ++
Sbjct: 387 IEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKL 446
Query: 350 LIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
+ + + R++ +MI+ E T+ M++K + E VW M K P
Sbjct: 447 MANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPD 506
Query: 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468
++++VLI GL +G ++C LE+M++KG++ + K + G+ ++ + L +
Sbjct: 507 DNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQ 566
Query: 469 K 469
+
Sbjct: 567 R 567
|
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| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 137/466 (29%), Positives = 251/466 (53%)
Query: 21 RYNSSEPSTEALDAAKS---ISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
R +S+ A D KS + K PK L+ AL++SG+ + P ++E VL + +AG
Sbjct: 70 RTKNSKYDEFASDVEKSYRILRKFHSRVPK--LELALNESGVELRPGLIERVLNRCGDAG 127
Query: 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK--RMLNVETFC 135
L + FF WA KQ Y HS+ Y SM++ L+K+RQ+ +W L+ MR + +++ E F
Sbjct: 128 NLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFV 187
Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
++++++A V++A+ + M K+G + F LL ALCK +V+ A ++F+ M+ R
Sbjct: 188 VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR 247
Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
F + + ++ LL GW + + A+ + +M + G PDIV Y ++ AG++ +A
Sbjct: 248 FPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAY 307
Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
+++ M P + Y+VL+ +R+E+A+ F+EME+ ADV Y AL+ F
Sbjct: 308 DLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGF 367
Query: 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADA 374
CK K Y VL DM KG+ P+ T I+ + +E + +M ++ D
Sbjct: 368 CKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDI 427
Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434
Y ++I++ C+ GE+++A ++W M+ P + TF ++INGL +G + ++ ++
Sbjct: 428 GIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKE 487
Query: 435 MIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
M+ +G+ S +G L+ LL ++ L+ ++ + + + C+
Sbjct: 488 MVTRGLF-SVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITSKGACE 532
|
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| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 137/449 (30%), Positives = 239/449 (53%)
Query: 45 SPKVVLDT-ALDQSGI---RVSPEIVEDVLEK---FRNAGTL--AFCFFKWAEKQQNYEH 95
+P + L +LD S I +VSP +V V+EK R+ L + FF WA + +Y+H
Sbjct: 89 NPSLTLHALSLDFSQIETSQVSPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDH 148
Query: 96 -SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYT 153
S Y+ MI+ K+RQ+ + W L++ M+++ + +++ETF I++R+Y R EAV+
Sbjct: 149 KSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHC 208
Query: 154 FNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213
FN M+ YG + AF+ ++S L + + +AQ FD +KDRF PD Y+ L+ GW +
Sbjct: 209 FNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRA 268
Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
+ A ++F+EM G P++ TY I++D LC+ G++ A + M + C P + +
Sbjct: 269 GEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITF 328
Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333
+ L+ + R E + + +M+K G D YN LI A C+ +N +VL M
Sbjct: 329 NNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIK 388
Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGGELEK 392
K N+ T N I + + + + A+R++ +M++ CE + TY ++++MF +
Sbjct: 389 KKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDM 448
Query: 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE-KGIRPSGETFGKLR 451
K+ K M K P+++T+ +L+ C G +++ L ++M+E K + PS + +
Sbjct: 449 VLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVL 508
Query: 452 KLLIKEGREDVLKFLQEKM--NLLVKEPL 478
L + G+ + L EKM LV PL
Sbjct: 509 AQLRRAGQLKKHEELVEKMIQKGLVARPL 537
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| TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 124/438 (28%), Positives = 222/438 (50%)
Query: 54 LDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY 113
L + + V+ +V VL +F N A+ FF WA Q Y HS Y++M++ L K R +
Sbjct: 123 LSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNF 182
Query: 114 QIMWDLVNAMRTK---RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK-YGVTQNLAAF 169
+MW+LVN M +++ ++T +MR+ A+ K +AV F M+K YGV + A
Sbjct: 183 DLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAM 242
Query: 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229
N L+ AL K ++ A E+F + D PD++T++IL+ G+ K AR + M T
Sbjct: 243 NSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVT 302
Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289
PD+VTY V+ CK G +++ M C P Y++++H+ G ++ +A
Sbjct: 303 EFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEA 362
Query: 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349
+ + +M+++G + D Y++LI K +FK+ + +DM ++GV + N +++
Sbjct: 363 LGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISA 422
Query: 350 LIGRGETDEAYRVFRRMI----KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
+ + A R+ +RM + C + +TY ++KM C ++ K + + +K
Sbjct: 423 ALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKM-KLLGILLHHMVKND 481
Query: 406 IP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET----FGKLRKLLIKEGRE 460
+ + T+ +LI GLC G V ++C+ E+ + KG+ P T +L K + E +
Sbjct: 482 VSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCKMLVDELEKKNMAEAKL 541
Query: 461 DVLKFLQEKMNLLVKEPL 478
+ +Q K + PL
Sbjct: 542 KIQSLVQSKTMIDSHSPL 559
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| TAIR|locus:2083671 AT3G15200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 132/468 (28%), Positives = 245/468 (52%)
Query: 18 FLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVSPEIVEDVLEKFRNAG 77
F R+N + ALD I SSP+ + LD+ GI ++ E+V +V+ + R+
Sbjct: 65 FPNRFNDDKDKQSALDVHNIIKHHRGSSPEKI-KRILDKCGIDLTEELVLEVVNRNRSDW 123
Query: 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--MLNVETFC 135
A+ + KQ + S Y+ +++ L K+R+++ + + M +KR +N +T+
Sbjct: 124 KPAYILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEM-SKRDGFVNEKTYE 182
Query: 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195
+++ +YA KV+EAV F +++G+ +L AF+GLL LC+ K+V A+ +F +
Sbjct: 183 VLLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRRE 242
Query: 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255
F D K +++L GW N+ A+ +++++ + C PD+V+YG M++ L K G++ +A+
Sbjct: 243 FGCDIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAM 302
Query: 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAF 315
+ ++M T P I + ++ + RI +A++ F E+ + G +V YN+L+
Sbjct: 303 ELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHL 362
Query: 316 CKANKFKNVYRVLKDMNSKG--VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEA 372
CK + + V+ ++++M KG +PN T + +L + D V RM K CE
Sbjct: 363 CKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDI---VLERMAKNKCEM 419
Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
+D Y +M +++ Q + EK ++W M+ P T+++ I+GL KG + ++
Sbjct: 420 TSDLYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYF 479
Query: 433 EDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
++M+ KG+ P T L + K ED K L+ NL +E D
Sbjct: 480 QEMMSKGMVPEPRTEMLLNQNKTKPRVED--KMLRS--NLTSEESESD 523
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FVX2 | PP129_ARATH | No assigned EC number | 0.7350 | 0.9708 | 0.9013 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | grail3.0002017301 | hypothetical protein (440 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 480 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 2e-18
Identities = 72/310 (23%), Positives = 136/310 (43%), Gaps = 14/310 (4%)
Query: 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-PDS 200
A+ KV+ F+ M GV N+ F L+ ++ V KA + M+ + + PD
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 201 KTYSILLEGWGKDPNLPRAREIFREMV--DTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
++ L+ G+ + RA ++ EM +PD +T G ++ AG+VD A +
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
+ + + T +Y++ V++ + + A+ + +M+K G+ D ++AL+ A
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG----RGETDEAYRVFR--RMIKLCEA 372
+ +L+D +G+ + + + L+G +A ++ + IKL
Sbjct: 663 GDLDKAFEILQDARKQGIKLGT----VSYSSLMGACSNAKNWKKALELYEDIKSIKL-RP 717
Query: 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432
T +I C+G +L KA +V MK P+ T+S+L+ K LL
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 433 EDMIEKGIRP 442
E GI+P
Sbjct: 778 SQAKEDGIKP 787
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 2e-12
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421
TY +I +C+ G++E+A K++ MK + P+++T+S+LI+GLC
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 8e-12
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350
DV YN LI +CK K + ++ +M +G+ PN T +I+++GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 82/423 (19%), Positives = 147/423 (34%), Gaps = 108/423 (25%)
Query: 1 MIKVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLD---TALDQS 57
M K+YH+ F + EA AK I LS+ +++ ++ D
Sbjct: 404 MDKIYHA---------KFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDID 454
Query: 58 GIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMW 117
G VL + AG A C Y ++I + AK + M+
Sbjct: 455 GAL-------RVLRLVQEAGLKADCKL---------------YTTLISTCAKSGKVDAMF 492
Query: 118 DLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176
++ + M + NV TF ++ AR +V +A + +M+ V + FN L+SA
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 177 -------------------------------------CKSKNVRKAQEIFDCMKDRFIPD 199
+ V +A+E++ + + I
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 200 S-KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
+ + Y+I + + + A I+ +M G PD V + +VDV AG +D+A I+
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
+ + + YS L+ + A++ + +++ + V+ NALI A C+
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
Query: 319 NKFKNVYRVLKDMNSKG-----------------------------------VAPNSRTC 343
N+ VL +M G + PN C
Sbjct: 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
Query: 344 NII 346
I
Sbjct: 793 RCI 795
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-10
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 338 PNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQ 386
P+ T N +++G +G+ +EA ++F M K + + TY+++I C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 1e-10
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 198 PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
PD TY+ L++G+ K + A ++F EM G P++ TY I++D LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 17/201 (8%)
Query: 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM-KDRFIPD 199
Y R ++ A FN +K ++ ++N LL+ A E+F+ M + PD
Sbjct: 534 YVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
Query: 200 SKTYSILLEGWGKDPNLPRAREIFREM-VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIV 258
T+ LL + + + E F M P++ Y +VD+L +AG++ EA +
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRI---EDAVDTFLEMEKNGILADVAMYNALIGAF 315
M T P ++ L++ + + E A E++ N V Y L +
Sbjct: 649 NKMPIT---PDPAVWGALLNACRIHRHVELGELAAQHIFELDPN----SVGYYILLCNLY 701
Query: 316 CKANKFKNVYRVLKDMNSKGV 336
A K+ V RV K M G+
Sbjct: 702 ADAGKWDEVARVRKTMRENGL 722
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 58/286 (20%), Positives = 123/286 (43%), Gaps = 49/286 (17%)
Query: 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194
C ++ Y++ +E+A F+ M + + A+N +L+ +A ++ M+D
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318
Query: 195 RFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253
+ D T+SI++ + + L A++ ++ TG DIV +VD+ K GR+
Sbjct: 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM-- 376
Query: 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313
EDA + F M + +++ +NALI
Sbjct: 377 ---------------------------------EDARNVFDRMPRKNLIS----WNALIA 399
Query: 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CE 371
+ + + + M ++GVAPN T +L+ G +++ + +F+ M + +
Sbjct: 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459
Query: 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN 417
A Y MI++ + G L++A+ ++ F P+++ ++ L+
Sbjct: 460 PRAMHYACMIELLGREGLLDEAY---AMIRRAPFKPTVNMWAALLT 502
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 81/427 (18%), Positives = 157/427 (36%), Gaps = 93/427 (21%)
Query: 44 SSPKVVLDTALDQSGIRVSPEIVEDVLEK-FRNAGTLAFCFFKWAEKQQNYEHSVRAYHS 102
S + DT + +SG+ + +I + V R A F+ E + Y +
Sbjct: 73 SKDARLDDTQIRKSGVSLCSQIEKLVACGRHREA----LELFEILEAGCPFTLPASTYDA 128
Query: 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162
++E+ CI ++ V+ V + ++ G
Sbjct: 129 LVEA----------------------------CIALKSIRCVKAV------YWHVESSGF 154
Query: 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREI 222
+ N +L K + A+ +FD M +R + ++ ++ G N A +
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER---NLASWGTIIGGLVDAGNYREAFAL 211
Query: 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK--------SMDSTVCRPTSFIYS 274
FREM + G + + T+ +M+ R LG + + + V T F+
Sbjct: 212 FREMWEDGSDAEPRTFVVML-------RASAGLGSARAGQQLHCCVLKTGVVGDT-FVSC 263
Query: 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334
L+ Y IEDA F M + +A +N+++ + + + +M
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVA----WNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL--------------CEADADTYTMM 380
GV+ + T +I++ R+F R+ L D T +
Sbjct: 320 GVSIDQFTFSIMI-------------RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440
+ ++ + G +E A V+ M K I +++ LI G + G + + + E MI +G+
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 441 RPSGETF 447
P+ TF
Sbjct: 423 APNHVTF 429
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-08
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317
P Y+ L+ Y + ++E+A+ F EM+K GI +V Y+ LI CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 1e-08
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261
G PD+VTY ++D LC+AGRVDEA+ ++ M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 8e-08
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDR-FIPDSKTYSILLEGWGK 212
++ +N L+ CK V +A ++F+ MK R P+ TYSIL++G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 37/187 (19%), Positives = 85/187 (45%), Gaps = 2/187 (1%)
Query: 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191
E + I + ++ + A+ ++ M+K GV + F+ L+ + ++ KA EI
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 192 MKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250
+ + I + +YS L+ N +A E++ ++ P + T ++ LC+ +
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310
+ +AL ++ M P + YS+L+ ++ + +D + +++GI ++ M
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794
Query: 311 LIGAFCK 317
+ G C
Sbjct: 795 ITG-LCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-07
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178
+V T+ ++ Y + KVEEA+ FN M+K G+ N+ ++ L+ LCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 59/272 (21%), Positives = 121/272 (44%), Gaps = 11/272 (4%)
Query: 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVY 152
E + A++SM+ A + L MR + ++ TF I++R ++R+ +E A
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
Query: 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212
+ + G ++ A L+ K + A+ +FD M + + +++ L+ G+G
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL---ISWNALIAGYGN 403
Query: 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRPTSF 271
+A E+F M+ G P+ VT+ ++ +G ++ I +SM +P +
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463
Query: 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
Y+ ++ G E +++A + + + V M+ AL+ A C+ +K + R+ +
Sbjct: 464 HYACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTA-CRIHKNLELGRLAAE- 518
Query: 332 NSKGVAPNSRTCNIIL-NGLIGRGETDEAYRV 362
G+ P ++L N G EA +V
Sbjct: 519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 63/357 (17%), Positives = 135/357 (37%), Gaps = 56/357 (15%)
Query: 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218
K G +++ N L+ + +A+++F M+ + D+ +++ ++ G+ K+ +
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK---DAVSWTAMISGYEKNGLPDK 372
Query: 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278
A E + M +PD +T ++ G +D + + + + + + L+
Sbjct: 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432
Query: 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK-FKNVYRVLKDMNSKGVA 337
Y I+ A++ F + + DV + ++I N+ F+ + + M +
Sbjct: 433 MYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALI-FFRQMLLT-LK 486
Query: 338 PNSRT-------C----------------------------NIILNGLIGRGETDEAYRV 362
PNS T C N +L+ + G + A+
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546
Query: 363 FRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422
F E D ++ +++ + G+ A +++ M P TF L+
Sbjct: 547 F----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602
Query: 423 GIVSDSCVLLEDMIEK-GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPL 478
G+V+ M EK I P+ + + + LL + G+ L E N + K P+
Sbjct: 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK------LTEAYNFINKMPI 653
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK-FKNVYRVLKDMNSKGVAPNSR 341
+ RI+D +D +MEK G+L +Y+A CK + K +R K + + P
Sbjct: 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438
Query: 342 TCNIILNGLIGRGETDEAYRVFR----RMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397
T N++++ + D A RV R +K AD YT +I + G+++ F+V+
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLK---ADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450
M ++HTF LI+G G V+ + M K ++P F L
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 68/355 (19%), Positives = 133/355 (37%), Gaps = 58/355 (16%)
Query: 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173
Q + L + + ++ + + + R + VEE + + + N +L
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233
S + + A +F M +R D ++++L+ G+ K A ++ M+ G P
Sbjct: 129 SMFVRFGELVHAWYVFGKMPER---DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
Query: 234 DIVTY--------GIM--------------------VDVL-------CKAGRVDEALGIV 258
D+ T+ GI VDV+ K G V A +
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245
Query: 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318
M C ++ ++ Y + ++ F M + + D+ ++I A C+
Sbjct: 246 DRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA-CEL 300
Query: 319 NKFKNVYRVLKDMNS----KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374
R+ ++M+ G A + CN ++ + G EA +VF RM DA
Sbjct: 301 ---LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDA 354
Query: 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLIN-----GLCDKGI 424
++T MI + + G +KA + + M+ P T + +++ G D G+
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 5e-05
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS 270
VTY ++D LCKAGRV+EAL + K M P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 9e-05
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS 408
TY +I C+ G +E+A +++K MK + P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401
+ D TY +I C+ G +++A ++ M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366
KG+ P+ T N +++GL G DEA + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447
P + T++ LI+G C KG V ++ L +M ++GI+P+ T+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340
YN LI CKA + + + K+M +G+ P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 6e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 299 NGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331
G+ DV YN LI C+A + +L +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (94), Expect = 8e-04
Identities = 32/256 (12%), Positives = 86/256 (33%), Gaps = 5/256 (1%)
Query: 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM--KDRFIPDSKTYSI 205
A+ + + LA L+ L + +A E+ + + +
Sbjct: 5 LLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLL 64
Query: 206 LLEGWGKDPNLPRAREIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264
L K L A E+ + ++ P + +L G+ +EAL +++ +
Sbjct: 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL 124
Query: 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFK 322
P + + E+A++ + + + + AL +++
Sbjct: 125 DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184
Query: 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382
+L+ ++ + + G+ +EA + + ++L +A+ +
Sbjct: 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL 244
Query: 383 MFCQGGELEKAFKVWK 398
+ + G E+A + +
Sbjct: 245 LLLELGRYEEALEALE 260
|
Length = 291 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405
TY +I +C+ G+LE+A +++K MK K
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 236 VTYGIMVDVLCKAGRVDEALGIVKSM 261
VTY ++ CKAG+++EAL + K M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGV 336
YN+LI +CKA K + + K+M KGV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 480 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.73 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.66 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.61 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.49 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.49 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.49 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.47 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.43 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.42 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.42 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.39 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.39 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.39 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.31 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.29 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.29 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.28 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.21 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.07 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.01 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.99 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.97 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.97 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.93 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.93 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.92 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.9 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.89 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.89 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.89 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.88 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.82 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.81 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.81 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.8 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.78 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.76 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.76 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.75 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.73 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.71 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.71 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.71 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.7 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.68 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.64 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.63 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.6 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.59 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.5 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.49 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.43 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.33 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.25 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.25 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.06 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.04 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.02 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.02 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.0 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.95 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.95 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.93 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.91 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.91 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.83 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.79 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.73 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.7 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.7 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.7 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.7 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.68 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.66 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.66 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.64 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.63 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.63 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.62 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.61 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.6 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.58 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.57 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.56 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.54 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.51 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.5 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.49 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.44 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.43 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.33 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.3 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.3 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.27 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.23 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.22 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.22 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.19 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.15 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.13 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.05 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.04 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.02 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.96 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.87 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.81 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.75 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.69 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.65 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.64 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.64 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.63 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.63 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.59 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.54 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.52 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.51 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.5 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.49 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.48 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.37 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.32 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.32 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.32 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.3 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.19 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.16 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.12 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.04 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.94 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.9 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.87 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.83 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.82 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.79 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.77 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.71 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.51 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.43 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.32 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.26 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.23 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.21 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.1 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.07 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.07 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.86 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.86 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.81 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.76 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.68 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.67 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.62 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.57 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.53 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.46 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.43 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.27 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.22 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.11 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.5 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.5 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.27 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.21 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.18 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.13 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.11 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.0 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.96 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.78 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.71 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.68 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.67 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.62 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.55 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 92.49 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.45 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.16 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.93 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.54 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.3 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.98 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.87 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.82 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.97 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.63 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.42 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.32 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.24 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.14 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.1 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.09 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.97 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.96 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.89 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.58 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 88.03 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.74 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 87.4 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.39 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 87.37 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.92 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 86.85 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.51 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.48 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.32 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 86.14 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.08 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.83 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 85.76 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 85.49 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.46 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.3 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.23 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.23 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.78 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.59 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.58 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.35 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.15 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.05 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.9 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 83.29 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.64 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 81.93 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 80.93 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 80.93 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.91 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 80.85 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.75 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 80.43 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.37 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.08 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.05 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=481.80 Aligned_cols=415 Identities=17% Similarity=0.289 Sum_probs=343.6
Q ss_pred CCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHH
Q 011652 60 RVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCII 137 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 137 (480)
..+...+..++..+.+.++ .|+++|++|....-..++...++.++..|.+.|.+++|..+|+.|.. |+..+|+.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~L 443 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNML 443 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHH
Confidence 3445567777777776665 78888888876655567777788888888888888888888887764 678888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCCh
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNL 216 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 216 (480)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ +..||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 888888888888888888888888888888888888888888888888888888876 6778888888888888888888
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCccHHHHHHHHHHhhccCCHHHHHHHHH
Q 011652 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDS--TVCRPTSFIYSVLVHTYGVENRIEDAVDTFL 294 (480)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 294 (480)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.. .++.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888865 5678888888888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCC
Q 011652 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEAD 373 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~ 373 (480)
.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+ +..|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888887 77888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011652 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||..++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhhCCC
Q 011652 454 LIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
|.+.|++++|.+++++|.+.+..|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCC
Confidence 888888888888888887766554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=478.63 Aligned_cols=426 Identities=18% Similarity=0.301 Sum_probs=400.0
Q ss_pred chhHHHHHhhCCCC-CCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011652 47 KVVLDTALDQSGIR-VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM 123 (480)
Q Consensus 47 ~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 123 (480)
+..+...|...|+. ++.-....++..|...+. .|+.+|+.+.. |+..+|+.++.+|++.|+++.|.++|+.|
T Consensus 389 Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M 463 (1060)
T PLN03218 389 CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLV 463 (1060)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45666778888864 555566677888877665 89999987742 89999999999999999999999999999
Q ss_pred HhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChh
Q 011652 124 RTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSK 201 (480)
Q Consensus 124 ~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 201 (480)
.+.|+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. +..||..
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999987 8899999
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHH--cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 011652 202 TYSILLEGWGKDPNLPRAREIFREMVD--TGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (480)
+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 999999999999999999999999986 679999999999999999999999999999999999999999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHH
Q 011652 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 359 (480)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|
T Consensus 624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 360 YRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 360 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.++|++|.+ +..||..+|+.|+.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+++.+|.+.
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999988 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhhhCCC
Q 011652 439 GIRPSGETFGKLRKLLIK----E-------------------GREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 439 ~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~l~~~~ 477 (480)
|+.||..+|+.++..|.+ . +..+.|..++++|.+.+..|
T Consensus 784 Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 784 GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999876542 1 22467999999999877665
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-57 Score=449.78 Aligned_cols=412 Identities=19% Similarity=0.276 Sum_probs=388.5
Q ss_pred chhHHHHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011652 47 KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124 (480)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 124 (480)
..+++..+.+.|+.|+..+++.++..+.+.+. .|.++|+.+. .||..+|+.++.+|++.|++++|.++|++|.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45788888899999999999999999998887 8999999884 2689999999999999999999999999999
Q ss_pred hCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhH
Q 011652 125 TKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203 (480)
Q Consensus 125 ~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 203 (480)
+.++ |+..+|..++.+|++.|..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|+.|.. +|..+|
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~ 293 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAW 293 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999974 599999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
|.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.++.+|++.
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|
T Consensus 374 G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 374 GRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999975 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011652 364 RRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441 (480)
Q Consensus 364 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 441 (480)
+.|.+ +..|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+. .
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~ 524 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--G 524 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--C
Confidence 99986 88999999999999999999999999998876 56799999999999999999999999999999754 4
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 442 P-SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 442 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
| +..+|..+++.|.+.|++++|.+++++|.+.+.
T Consensus 525 p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 5 467899999999999999999999999988653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-57 Score=456.30 Aligned_cols=407 Identities=16% Similarity=0.238 Sum_probs=360.9
Q ss_pred hhHHHHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011652 48 VVLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRT 125 (480)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 125 (480)
.+++..+.+.|+.++..+++.++..+.+.++ .|.++|+.+. .+|..+||.+|.+|++.|++++|.++|++|..
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4666777778888888888888888888887 7999999874 26889999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHH
Q 011652 126 KRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS 204 (480)
Q Consensus 126 ~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 204 (480)
.+. |+..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n 358 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWT 358 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHH
Confidence 998 99999999999999999999999999999999999999999999999999999999999999997 47999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.++.+|++.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH----------------
Q 011652 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN---------------- 348 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---------------- 348 (480)
++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.
T Consensus 439 ~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 99999999988865 4666777777777777777777777777764 36666666665555
Q ss_pred -------------------HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011652 349 -------------------GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 349 -------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 409 (480)
+|++.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 455555555555555554 688899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 410 HTFSVLINGLCDKGIVSDSCVLLEDMI-EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
.||+.++.+|++.|++++|.++|++|. +.|+.|+..+|..++.+|.+.|++++|.+++++|.
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 999999999999999999999999998 67999999999999999999999999999999884
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-56 Score=441.49 Aligned_cols=411 Identities=17% Similarity=0.243 Sum_probs=324.4
Q ss_pred HHHHhhC-CCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011652 51 DTALDQS-GIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127 (480)
Q Consensus 51 ~~~l~~~-~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 127 (480)
...|... +..|+..++..++..|.+.+. .|.+++..+.+ .|+.||..+|+.++..|++.|+++.|.++|++|.+
T Consensus 110 f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-- 186 (697)
T PLN03081 110 FEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-- 186 (697)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--
Confidence 3444443 366777777777777776555 57777777644 36777788888888888888888888888877754
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHH
Q 011652 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSIL 206 (480)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l 206 (480)
++..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+ +..||..+|+.|
T Consensus 187 -~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 187 -RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred -CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 466778888888888888888888888887777778888888888888888888777777777766 677788888888
Q ss_pred HHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCH
Q 011652 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286 (480)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (480)
+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 8888888888888888888753 577888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 011652 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 366 (480)
++|.+++..|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888764 57788888888888888888888888888
Q ss_pred Hh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 367 IK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL-KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 367 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
.+ +..||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+.
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~ 494 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTV 494 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCH
Confidence 77 7888888888888888888888888888888865 578888888888888888888888888877665 577888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.+|.+++.+|...|+++.|.++++++.++.+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 88888888888888888888888888766554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=446.90 Aligned_cols=419 Identities=17% Similarity=0.193 Sum_probs=381.3
Q ss_pred chhHHHHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011652 47 KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124 (480)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 124 (480)
+..+...|...|+.|+..++..+++.|...+. .+.+++..+.+ .|+.|++.+|+.+|.+|++.|+++.|.++|++|.
T Consensus 171 A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~ 249 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC
Confidence 34566677788999999999999999987665 68888888855 4888999999999999999999999999999996
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhH
Q 011652 125 TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTY 203 (480)
Q Consensus 125 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 203 (480)
. ++..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+ +..||..+|
T Consensus 250 ~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 250 R---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred C---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 5 477899999999999999999999999999999999999999999999999999999999999988 899999999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|++.
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 999999999999999999999997 4799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975 58899999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------------------CCCHHHHH
Q 011652 364 RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF------------------------------IPSMHTFS 413 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------------------~p~~~~~~ 413 (480)
++|..+.+||..+|+.++.+|++.|.++.+.+++..+.+.|+ .||..+|+
T Consensus 479 ~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n 558 (857)
T PLN03077 479 RQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN 558 (857)
T ss_pred HHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH
Confidence 999988889998887766555554444444444444433332 47889999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhhCCC
Q 011652 414 VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN-LLVKEP 477 (480)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~l~~~~ 477 (480)
.++.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|.+++|.++++.|. +.+..|
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998 455555
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-27 Score=243.00 Aligned_cols=400 Identities=12% Similarity=0.063 Sum_probs=211.4
Q ss_pred CHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011652 62 SPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 139 (480)
++..+..+...+...++ .|.+.|+.+....+ .+...+..+...+...|++++|.+.|+.+....+.+..++..+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 33444444444433333 55666655543322 344455555555555555555555555555555545555555555
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHH
Q 011652 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
.+.+.|+.++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+....+.+..+|..+..++...|++++|
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555554433 334444444555555555555555555555444444445555555555555555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC---------------------------------C
Q 011652 220 REIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV---------------------------------C 266 (480)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------------~ 266 (480)
...|+++.+.. +.+...+..+..++...|++++|...++++.+.. .
T Consensus 621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55555554432 1133344444444555555555555555444432 0
Q ss_pred CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 011652 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 267 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
+.+...+..+...+...|++++|...|+.+...+ |+..++..+...+.+.|++++|...+..+.+... .+...+..+
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~l 776 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTAL 776 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 2333444444455555555555555555554432 2223444445555555555555555555554422 244455555
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011652 347 LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 426 (480)
...|...|+.++|..+|+++.+..+.++.++..+...+...|+ .+|...++++..... -+..++..+...+...|+++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHH
Confidence 5555555666666666666555555555555666666666555 556666665554432 13445555666666667777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 427 DSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 427 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
+|..+++++++.+.. +..++..+..++.+.|++++|.+++++|.
T Consensus 855 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 855 RALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777777765532 66666667777777777777777776664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-26 Score=237.45 Aligned_cols=397 Identities=14% Similarity=0.110 Sum_probs=291.9
Q ss_pred HHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Q 011652 69 VLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK 146 (480)
Q Consensus 69 ~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 146 (480)
+...+...++ .|+++++.+....+ .++.+|..+...+...|++++|.+.|+++....+.+...+..+...+...|+
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQP--DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC
Confidence 3444444444 89999988865533 6788999999999999999999999999998888888889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHH
Q 011652 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
+++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++....+.+...+..++..+.+.|++++|..+++++
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998875 6678899999999999999999999999998877778889999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHH
Q 011652 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306 (480)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 306 (480)
.+.. +.+...|..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 670 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTE 670 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH
Confidence 8754 4467889999999999999999999999998764 4567778888999999999999999999887653 22455
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHH---------------------------------HHHHHHhC
Q 011652 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI---------------------------------ILNGLIGR 353 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---------------------------------l~~~~~~~ 353 (480)
++..++..+...|++++|..+++.+.+.+. .+...+.. +..++.+.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHC
Confidence 555555555555555555555555554422 13333444 44444455
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
|+.++|.+.++.+.+..+.+...+..+...|...|++++|.+.|+++.+... ++...+..+...+...|+ .+|+..++
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 5555555555555544455555555555556666666666666666555432 345555555666666665 55666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 434 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
++.+.. +.++.++..+..++...|++++|.+.++++.+..+
T Consensus 828 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 828 KALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 655432 22344455566666677777777777777766554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-22 Score=186.26 Aligned_cols=301 Identities=16% Similarity=0.133 Sum_probs=166.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCCh
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN---LAAFNGLLSALCKSKNV 182 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~ 182 (480)
.+...|++++|...|+++.+.++.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445667777788888777777766667777777777777777777777777766431111 23456666677777777
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHH
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI----VTYGIMVDVLCKAGRVDEALGIV 258 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~ 258 (480)
++|..+|+++.+..+++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|.+.+
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 77777777776654555666666666777777777777777666654322211 12233344444555555555555
Q ss_pred HHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011652 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
+++.+.. +.+.. .+..+...+.+.|++++|...++++.+.+...
T Consensus 204 ~~al~~~-p~~~~-----------------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 204 KKALAAD-PQCVR-----------------------------------ASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHhHC-cCCHH-----------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 5544432 22233 34444444445555555555555544432211
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
...++..++.+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|.++++++.+. .|+...+..++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE-YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 1233444555555555555555555555442 223333455555555555555555555555543 2555555555544
Q ss_pred HHh---cCChHHHHHHHHHHHHcCCCCCHH
Q 011652 419 LCD---KGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 419 ~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
+.. .|+.+++..++++|.+.++.|++.
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 443 335555555555555544444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=175.12 Aligned_cols=371 Identities=16% Similarity=0.102 Sum_probs=316.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHH-HHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA-FNGLL 173 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll 173 (480)
.-.++|..+.+.+-..|++++|+.+++.+.+..+...+.|..+..++...|+.+.|.+.|....+. .|+... .+.+.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 356789999999999999999999999999999988999999999999999999999999998875 465544 34455
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHH
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD-IVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 252 (480)
..+...|++++|...+.+..+..+--...|+.|...+-..|++..|++.|++..+. .|+ ...|..|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 56667899999999999888765656788999999999999999999999999874 454 567888999999999999
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
+|...+.+..... +.....+..+...|...|+.+.|+..|++..+.... -...|+.|..++-..|++.+|.+.+.+..
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999887763 445677888888899999999999999999876322 36789999999999999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 011652 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHT 411 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~ 411 (480)
..... .....+.|...+...|.++.|..+|....+-.+.-....+.|...|-+.|++++|...+++..+. .|+ ...
T Consensus 348 ~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda 424 (966)
T KOG4626|consen 348 RLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADA 424 (966)
T ss_pred HhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHH
Confidence 86322 45678889999999999999999999999877777788999999999999999999999998874 465 468
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
|+.+...|-..|+.+.|...+.+++.. .|.. ...+.|...|...|+..+|..-++...++++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999874 4553 45778888999999999999999999888764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-22 Score=184.15 Aligned_cols=293 Identities=15% Similarity=0.118 Sum_probs=216.5
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHH
Q 011652 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPD---IVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 252 (480)
+...|++++|...|.++.+..+.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455566666666666554444555566666666666666666666666654321111 234566667777777777
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD----VAMYNALIGAFCKANKFKNVYRVL 328 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~ 328 (480)
+|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777777776643 44566677777777777777777777777776543322 224556777888999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011652 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD-ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407 (480)
Q Consensus 329 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 407 (480)
+++.+.... +...+..+...+.+.|++++|.++++++.+..+.+ ..++..++.+|...|++++|...++++.+.. |
T Consensus 204 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 204 KKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 999876422 45577788899999999999999999998743333 4678899999999999999999999998864 6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhh
Q 011652 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK---EGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~l~ 474 (480)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+..
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 6677788999999999999999999999875 6888899888877765 568999999999998643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-20 Score=183.13 Aligned_cols=318 Identities=12% Similarity=0.084 Sum_probs=166.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|+.+++.+....+ .+...+..++......|++++|...++++....|.+...+..+...+...|++++|+..++++.
T Consensus 60 ~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al 137 (656)
T PRK15174 60 VGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAW 137 (656)
T ss_pred hhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555443332 2344444444555556666666666666666555555555566666666666666666666655
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhH
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (480)
+.. +.+...+..+..++...|++++|...++.+....+.+...+..+. .+...|++++|...++.+.+....++...+
T Consensus 138 ~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~ 215 (656)
T PRK15174 138 LAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESA 215 (656)
T ss_pred HhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHH
Confidence 542 334455555555566666666666666555443333333333322 245556666666666655544322233333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED----AVDTFLEMEKNGILADVAMYNALIGA 314 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~ 314 (480)
..+...+...|++++|+..++...... +.+...+..+...+...|++++ |...+++..+.. +.+...+..+...
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 293 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 344455555666666666666555543 3344455555555555665553 555555555432 1244455555555
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 394 (480)
+...|++++|...+++..+.... +...+..+..++.+.|++++|...++.+....+.+...+..+..++...|+.++|.
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH
Confidence 56666666666666655554222 23344445555555666666666665555433333333333445555556666666
Q ss_pred HHHHHHHhC
Q 011652 395 KVWKYMKLK 403 (480)
Q Consensus 395 ~~~~~~~~~ 403 (480)
+.|++..+.
T Consensus 373 ~~l~~al~~ 381 (656)
T PRK15174 373 SVFEHYIQA 381 (656)
T ss_pred HHHHHHHHh
Confidence 666655543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-20 Score=190.76 Aligned_cols=382 Identities=10% Similarity=0.044 Sum_probs=242.7
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHH------------HHHHHHHHh
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFC------------IIMRKYARV 144 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~------------~li~~~~~~ 144 (480)
.|...|+.+.+..+ .+...+..+...+.+.|++++|+..|++..+..+ +....|. .....+.+.
T Consensus 287 ~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 287 KAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 66777766655432 3566777777777777777777777777766555 1211111 123345566
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHH
Q 011652 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (480)
|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+..+.+...+..+...+. .++.++|..+++
T Consensus 365 g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~ 442 (1157)
T PRK11447 365 NNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIA 442 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 77777777777776654 4455566666677777777777777777776644445555544444432 223344444443
Q ss_pred HHHHcCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 011652 225 EMVDTGCN--------PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 225 ~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (480)
.+...... .....+..+...+...|++++|++.+++..+.. +.+...+..+...|...|++++|...++++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32211000 001122233444555666666666666666543 334455555666666666666666666666
Q ss_pred HHCCCCCCHHHHHH--------------------------------------------HHHHHHHcCCHhHHHHHHHHHH
Q 011652 297 EKNGILADVAMYNA--------------------------------------------LIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 297 ~~~~~~~~~~~~~~--------------------------------------------li~~~~~~~~~~~a~~~~~~~~ 332 (480)
.+... .+...+.. ....+...|+.++|..+++.
T Consensus 522 l~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-- 598 (1157)
T PRK11447 522 AQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-- 598 (1157)
T ss_pred HHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--
Confidence 54321 12222222 23344455566666655541
Q ss_pred hCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011652 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF 412 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 412 (480)
.+.+...+..+...+.+.|+.++|+..++.+.+..|.+...+..++..|...|++++|.+.++.+..... .+...+
T Consensus 599 ---~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~ 674 (1157)
T PRK11447 599 ---QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQ 674 (1157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHH
Confidence 2334556677888889999999999999999988788899999999999999999999999998876532 255667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 413 SVLINGLCDKGIVSDSCVLLEDMIEKGIR--P---SGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
..+..++...|++++|.+++++++..... | +...+..+...+...|++++|.+.+++...
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888999999999999999864322 2 224566678888899999999999988864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-19 Score=173.99 Aligned_cols=389 Identities=13% Similarity=0.043 Sum_probs=284.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|+..|+.+.... |++..|..+..+|.+.|++++|++.++...+.++.+..+|..+..++...|++++|+..|....
T Consensus 145 ~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 145 KAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7899998876543 5677888889999999999999999999998888888889999999999999999988887665
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC----------------------------CCC-ChhhHHHHHHH
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR----------------------------FIP-DSKTYSILLEG 209 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~-~~~~~~~l~~~ 209 (480)
..+-..+.. ...++..+........+...++.-... ..+ ....+..+...
T Consensus 222 ~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (615)
T TIGR00990 222 IIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLK 300 (615)
T ss_pred HhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHH
Confidence 443111111 111111111100011111111110000 000 00111111111
Q ss_pred ---hhcCCChhHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC
Q 011652 210 ---WGKDPNLPRAREIFREMVDTG-CNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 210 ---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|+..+++..... +.....|..+..++...|
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELG 379 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCC
Confidence 122467899999999998764 223 35567888888899999999999999998764 344668888899999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 011652 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 364 (480)
++++|...|++..+.. +.+..+|..+...+...|++++|...|++..+.... +...+..+..++.+.|++++|+..++
T Consensus 380 ~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 380 DPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988764 336788888999999999999999999999987433 55677778888999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 365 RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM------HTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
...+..+.++..++.+...+...|++++|.+.|++........+. ..++.....+...|++++|..++++....
T Consensus 458 ~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 458 RCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999887888999999999999999999999999998876422111 11222222344469999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 439 GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 439 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
. +.+...+..+...+.+.|++++|.+++++..++..
T Consensus 538 ~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 538 D-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 4 23445688899999999999999999999887754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-20 Score=180.96 Aligned_cols=335 Identities=11% Similarity=0.047 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
.-...++..+.+.|++++|..+++......+-+...+..++.+....|++++|+..++.+.+.. |.+...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445567778899999999999999999988778888888888899999999999999999875 567788888999999
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 257 (480)
..|++++|...+++.....+.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999999998767788899999999999999999999999887654332 2333333 347889999999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHHh
Q 011652 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN----VYRVLKDMNS 333 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~ 333 (480)
++.+......++......+..++...|++++|...++++.+.. +.+...+..+...+...|++++ |...+++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998776534445555666788899999999999999998764 3367788888999999999986 8999999988
Q ss_pred CCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHH
Q 011652 334 KGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM-HTF 412 (480)
Q Consensus 334 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~ 412 (480)
..+. +...+..+...+...|++++|...++++....+.+...+..+..++.+.|++++|...++.+...+ |+. ..+
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 6433 567888899999999999999999999998778888889999999999999999999999998764 444 334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 413 SVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
..+..++...|+.++|...|+++.+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445678899999999999999998754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-19 Score=181.07 Aligned_cols=408 Identities=10% Similarity=0.033 Sum_probs=312.7
Q ss_pred CCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHH
Q 011652 58 GIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC 135 (480)
Q Consensus 58 ~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 135 (480)
...+++..+...+......++ .|++++..+.... +.+...+..+...+.+.|++++|.++|++.....|.+...+.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 346677777777776665555 8888888876522 257778999999999999999999999999998888888899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC
Q 011652 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (480)
.++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++.+..|.+...+..+...+...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999998874 55666 88888899999999999999999999878888888888999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHhhhC-CCCccHH-HH----HH
Q 011652 216 LPRAREIFREMVDTGCNPDI------VTYGIMVDVLC-----KAGRV---DEALGIVKSMDST-VCRPTSF-IY----SV 275 (480)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ 275 (480)
.+.|+..++.... .|+. .....+++... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999998886654 2221 11122222222 12234 7788888888754 1122221 11 11
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGIL-ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP---NSRTCNIILNGLI 351 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~ 351 (480)
.+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|...|+++.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456779999999999999887532 332 22335678999999999999999988753221 1234566666789
Q ss_pred hCCChHHHHHHHHHHHhcCCC------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011652 352 GRGETDEAYRVFRRMIKLCEA------------D---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~------------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
..|++++|..+++.+....++ + ...+..+...+...|++++|.++++++.... +.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 999999999999999875432 2 2355677888899999999999999998764 33678889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 417 NGLCDKGIVSDSCVLLEDMIEKGIRPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..+...|++++|++.++++++.. |+ ...+...+..+.+.|++++|..+++++.+..++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998754 44 556667777889999999999999999887654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-20 Score=166.73 Aligned_cols=386 Identities=13% Similarity=0.112 Sum_probs=322.8
Q ss_pred HHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 011652 63 PEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK 140 (480)
Q Consensus 63 ~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 140 (480)
.+.+..+-..+...++ .|+.+++.+.+..+ ..+..|..+..++...|+.+.|.+.|.+..+.+|........+...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 3455556666666666 79999988876654 5789999999999999999999999999998887555556667777
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHH
Q 011652 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAR 220 (480)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (480)
.-..|+..+|...|.+.++.. +--..+|+.|...+-..|+...|++.|++..+-.+.-...|-.|...|...+.+++|.
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 778999999999999888753 3335678999999999999999999999998866666789999999999999999999
Q ss_pred HHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011652 221 EIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
..|.+.... .| ..+.+..+.-.|...|..+-|+..+++..+.. +.-...|+.+..++-..|+..+|.+.|.+....
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999998865 34 46778888888999999999999999998864 334778999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHH
Q 011652 300 GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378 (480)
Q Consensus 300 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 378 (480)
. +.-....+.|...|...|.+++|..+|....+- .|. ....+.|...|-++|++++|+..+++..+..|.-...|+
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 3 235678889999999999999999999999875 343 457888999999999999999999999986667778999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLLIK 456 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 456 (480)
.+...|-..|+.+.|.+.+.+.+..+ |. ...++.|...|-..|+..+|+.-+++.+. ++||. ..+..++.++.-
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHH
Confidence 99999999999999999999998865 43 57889999999999999999999999986 45654 345555555544
Q ss_pred cCCHH
Q 011652 457 EGRED 461 (480)
Q Consensus 457 ~g~~~ 461 (480)
..+|.
T Consensus 503 vcdw~ 507 (966)
T KOG4626|consen 503 VCDWT 507 (966)
T ss_pred Hhccc
Confidence 34433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-19 Score=184.00 Aligned_cols=367 Identities=10% Similarity=0.010 Sum_probs=280.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-CHHHH------------
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ-NLAAF------------ 169 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------ 169 (480)
....+...|++++|+..|++..+..+.+..++..+...+.+.|++++|+..|++..+..... ....+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 35567789999999999999999988889999999999999999999999999998764221 11112
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 249 (480)
......+.+.|++++|...|+++....+.+...+..+...+...|++++|++.|++..+.... +...+..+...+. .+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 122446778999999999999999877778888999999999999999999999999976422 4556666776664 56
Q ss_pred CHHHHHHHHHHhhhCCCC--------ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011652 250 RVDEALGIVKSMDSTVCR--------PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
+.++|..+++.+...... .....+..+...+...|++++|+..|++..+... .+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 789999988776432100 0122355667788899999999999999988643 2567788888999999999
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH----------------------------------
Q 011652 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI---------------------------------- 367 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------------------------- 367 (480)
++|...++++.+.... +...+..+...+...++.++|...++.+.
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 9999999999875322 23233222223334444444444433221
Q ss_pred ------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011652 368 ------KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441 (480)
Q Consensus 368 ------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 441 (480)
+..+.+...+..+...+.+.|++++|.+.|+++.+... .+...+..++..+...|++++|.+.++.+.+.. +
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 02456667778889999999999999999999998753 377889999999999999999999999887643 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 442 PSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 442 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+......+..++...|++++|.++++++.+..+
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 3455667788889999999999999999887643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-17 Score=160.29 Aligned_cols=369 Identities=9% Similarity=-0.076 Sum_probs=271.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.+......+.+.|++++|+..|++.....+ ++..|..+..+|.+.|++++|++.++...+.. +.+..++..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345667788999999999999999887654 67789999999999999999999999999875 5567889999999999
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcC----------------------------
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG---------------------------- 230 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 230 (480)
.|++++|..-|.........+......++..+.. ..+........+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 9999999988876644212221111111111111 01111111111100
Q ss_pred ---CCCC-hhhHHHHHHH---HHhcCCHHHHHHHHHHhhhCC--CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC
Q 011652 231 ---CNPD-IVTYGIMVDV---LCKAGRVDEALGIVKSMDSTV--CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301 (480)
Q Consensus 231 ---~~~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (480)
..+. ...+..+... ....+++++|.+.|+.....+ .+.....+..+..++...|++++|+..+++..+...
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 0000 0011111111 122468999999999998764 233456788888899999999999999999987632
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011652 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 302 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
.....|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...|++..+..+.+...+..+.
T Consensus 363 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 363 -RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 24667888888999999999999999999886433 5678888999999999999999999999998888889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH
Q 011652 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE------TFGKLRKLLI 455 (480)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~ 455 (480)
.++.+.|++++|...+++..... +.+...|..+...+...|++++|.+.|++..+.....+.. .+......+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 99999999999999999998764 2367889999999999999999999999998753221111 1122222334
Q ss_pred hcCCHHHHHHHHHHHHhhhCC
Q 011652 456 KEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 456 ~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..|++++|.+++++..++++.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCC
Confidence 469999999999998887654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-17 Score=166.80 Aligned_cols=376 Identities=12% Similarity=0.069 Sum_probs=290.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011652 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
+.++....-.+.+....|+.++|++++.......+.+...+..+...+...|++++|.++|+...+.. |.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35666666778888999999999999999987666778889999999999999999999999998864 55677788888
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.++...|++++|...++++....+.+.. +..+...+...|+.++|+..++++.+.... +...+..+..++...|..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999999987777888 999999999999999999999999986433 45556667888888999999
Q ss_pred HHHHHHHhhhCCCCccH------HHHHHHHHHhh-----ccCCH---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHH
Q 011652 254 ALGIVKSMDSTVCRPTS------FIYSVLVHTYG-----VENRI---EDAVDTFLEMEKN-GILADVA-MYN----ALIG 313 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~li~ 313 (480)
|++.++.... .|+. ......+.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9999987664 2221 11122222222 22334 7788888888754 2223221 111 1133
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD----ADTYTMMIKMFCQGG 388 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 388 (480)
.+...|++++|...|+.+.+.+.. |+. ....+...+...|++++|+..|+.+....+.+ ......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 456779999999999999987532 332 22335678999999999999999988743322 355677778889999
Q ss_pred CHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011652 389 ELEKAFKVWKYMKLKRF-----------IPS---MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 454 (480)
++++|.++++.+..... .|+ ...+..+...+...|+.++|+++++++.... +.+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999999887531 123 2345667788999999999999999998764 44677788899999
Q ss_pred HhcCCHHHHHHHHHHHHhhhCCC
Q 011652 455 IKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 455 ~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
...|++++|.+.+++..++.+..
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999887653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-16 Score=151.68 Aligned_cols=401 Identities=11% Similarity=0.025 Sum_probs=288.2
Q ss_pred HHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC
Q 011652 68 DVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ 145 (480)
Q Consensus 68 ~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 145 (480)
.++..+...+. .|+..++.... +-+.+......+...+...|++++|+++|+++.+..|.++..+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence 44444433343 78888887762 222345555555667888899999999999998888877888888888888889
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHH
Q 011652 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225 (480)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (480)
+.++|++.++.+... .|+...+..++..+...++..+|++.++++.+..|.+...+..+...+.+.|-...|.++..+
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 999999998888775 455555555555555566666688888888887777888888888888888888888877665
Q ss_pred HHHcCCCCChhhH------HHHHHHH---H--hcCC---HHHHHHHHHHhhhC-CCCccH-H----HHHHHHHHhhccCC
Q 011652 226 MVDTGCNPDIVTY------GIMVDVL---C--KAGR---VDEALGIVKSMDST-VCRPTS-F----IYSVLVHTYGVENR 285 (480)
Q Consensus 226 ~~~~~~~~~~~~~------~~l~~~~---~--~~g~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~g~ 285 (480)
-.+. +.+....+ ...++.- . ...+ .+.|+.-++.+... +..|.. . ...-.+-++...|+
T Consensus 229 ~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 229 NPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred Cccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 3321 11111101 1111110 0 1112 34455555555542 112322 1 22244567788999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhCCChHHHH
Q 011652 286 IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV-----APNSRTCNIILNGLIGRGETDEAY 360 (480)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~ 360 (480)
+.++++.|+.+...+.+....+-.++..+|...++.++|..++..+..... .++......|.-++...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 999999999999888776677888999999999999999999999876531 223333577888999999999999
Q ss_pred HHHHHHHhcCC------------CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011652 361 RVFRRMIKLCE------------ADA---DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 361 ~~~~~~~~~~~------------~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 425 (480)
.+++.+.+..| ||+ ..+..++..+...|+..+|++.++++....+ -|......+...+...|.+
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCH
Confidence 99999987322 221 2345567788899999999999999987653 4888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 426 SDSCVLLEDMIEKGIRPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 426 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.+|...++.+... .|+ ..+....+.++...|++++|..+.+++.+..++
T Consensus 467 ~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 467 RKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 9999999777664 344 455667888888999999999999888777654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-15 Score=150.76 Aligned_cols=392 Identities=12% Similarity=0.081 Sum_probs=289.3
Q ss_pred HHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011652 78 TLAFCFFKWAEKQQNYEHSV-RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNV 156 (480)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 156 (480)
..|+..|+.+.+..+ .+. .++ .++..+...|+.++|+..+++.....+........+...+...|++++|+++|++
T Consensus 51 ~~Al~~L~qaL~~~P--~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k 127 (822)
T PRK14574 51 APVLDYLQEESKAGP--LQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS 127 (822)
T ss_pred HHHHHHHHHHHhhCc--cchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 389999988876644 222 233 8888888999999999999999844445566666667899999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChh
Q 011652 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236 (480)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (480)
+.+.. |.++..+..++..+...++.++|++.++++....+ +...+..++..+...++..+|++.++++.+... -+..
T Consensus 128 aL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e 204 (822)
T PRK14574 128 SLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYDALQASSEAVRLAP-TSEE 204 (822)
T ss_pred HHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHH
Confidence 99876 55677788888899999999999999999987633 444455555555556677679999999998742 2567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHH------HHHHHHh-----hccCC---HHHHHHHHHHHHHC-CC
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY------SVLVHTY-----GVENR---IEDAVDTFLEMEKN-GI 301 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~g~---~~~a~~~~~~~~~~-~~ 301 (480)
.+..++.++.+.|-...|.++..+-...- .+....+ ...++.- ....+ .+.|+.-++.+... +.
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~ 283 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGK 283 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccC
Confidence 77888899999999999988877644321 1111111 1111110 01122 34455555555541 12
Q ss_pred CCCH-HHH----HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC------
Q 011652 302 LADV-AMY----NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC------ 370 (480)
Q Consensus 302 ~~~~-~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 370 (480)
.|.. ..| .-.+-++...|++.++.+.++.+...+.+....+-..+..+|...+++++|+.+++.+....
T Consensus 284 ~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~ 363 (822)
T PRK14574 284 DPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRN 363 (822)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCC
Confidence 2322 222 23345778899999999999999988866566688899999999999999999999997622
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC--H-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF-----------IPS--M-HTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
+++......|..+|...+++++|..+++.+.+... .|| - ..+..++..+...|+..+|++.++++.
T Consensus 364 ~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~ 443 (822)
T PRK14574 364 SDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS 443 (822)
T ss_pred CcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444467899999999999999999999987321 122 2 234456777889999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCCC
Q 011652 437 EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 437 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
... +-|......+...+...|++.+|++.++....+.+.+
T Consensus 444 ~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 444 STA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 764 5588889999999999999999999998888876653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-15 Score=129.39 Aligned_cols=399 Identities=15% Similarity=0.175 Sum_probs=267.6
Q ss_pred HHHHHhCC---CchhHHHHHhhCCCCCCHHHHHHHHHHHhhCcH-----HHHHHHHHHhhc---C---------------
Q 011652 38 ISKIMLSS---PKVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT-----LAFCFFKWAEKQ---Q--------------- 91 (480)
Q Consensus 38 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~a~~~~~~~~~~---~--------------- 91 (480)
+.+.+.+. ....+...|++.|++.++.+-..+++...-... .-.+-|-.+... .
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E 201 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE 201 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence 44555444 456788999999999999998888875432211 111112111100 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 011652 92 NYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFN 170 (480)
Q Consensus 92 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 170 (480)
-.+.+..+|..+|.++++--..+.|.+++++...... .+..+|+.+|.+-.-... .++..+|....+.||..|+|
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 1224667888888888888888888888888877666 888888888876554332 67788888888888888899
Q ss_pred HHHHHHHccCChhh----HHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhH-HHHHHHHHHH----cCCCC----Chh
Q 011652 171 GLLSALCKSKNVRK----AQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPR-AREIFREMVD----TGCNP----DIV 236 (480)
Q Consensus 171 ~ll~~~~~~~~~~~----a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~ 236 (480)
+++.+.++.|+++. |.+++.+|++ ++.|...+|..+|..+++.++..+ |..++.+... ..++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 88888888887665 4556667777 888888888888888888887644 4444444432 22222 344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCcc---HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTV----CRPT---SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 309 (480)
.|...+..|.+..+.+-|.++..-+.... +.|+ ...|..+....|.....+.....|+.|.-+-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 56677788888888888888776664321 1222 3345667777788888888888888888777778888888
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-Ch---H----------HHHHHHHHHHh------c
Q 011652 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG-ET---D----------EAYRVFRRMIK------L 369 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~---~----------~a~~~~~~~~~------~ 369 (480)
.++++..-.|.++-.-+++.++...|...+...-.-++..+++.. +. + -|..+++.... .
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 888888888888888888888888775555555444444444433 11 0 01111111111 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-F---IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI 440 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 440 (480)
........+.++-.+.+.|+.++|.+++..+.+.+ - .|.......++..-...+....|..+++-|...+.
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 34455667777788888889999988888885442 1 23333444566666777888888888888876543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-16 Score=145.27 Aligned_cols=393 Identities=14% Similarity=0.140 Sum_probs=263.4
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFN 155 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 155 (480)
.+.+++..+...++ .++.+.+.|.+.+.-.|++..++.+...+..... .-...|..+.++|-..|++++|...|.
T Consensus 254 ~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 68888887766655 6888888899999999999999999999877653 445668999999999999999999998
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCC----ChhHHHHHHHHHHHcCC
Q 011652 156 VMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP----NLPRAREIFREMVDTGC 231 (480)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~ 231 (480)
...+..-......+..+...+.+.|+++.+...|+.+....+.+..+..+|...|...+ ..+.|..++.+..+.-
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 88775422224455668889999999999999999998877778888888888877765 3455555555544432
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHh----hhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC---CCCCC
Q 011652 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSM----DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN---GILAD 304 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~ 304 (480)
+.|...|..+...+-.. +...++..+... ...+..+.....|.+...+...|+++.|...|+..... ...++
T Consensus 411 ~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 22444444444444332 222223333322 22233344444555555555555555555555444322 00111
Q ss_pred H------H-HHH--------------------------HHHHHHHHc-------CCHhHHHHHHHHHHhCC---------
Q 011652 305 V------A-MYN--------------------------ALIGAFCKA-------NKFKNVYRVLKDMNSKG--------- 335 (480)
Q Consensus 305 ~------~-~~~--------------------------~li~~~~~~-------~~~~~a~~~~~~~~~~~--------- 335 (480)
. . -|| ..|.+|.+. +...+|...+++....+
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 1 0 111 011122222 33444444444433211
Q ss_pred --------------------------CCCChhhHHHHHHHHH------------hCCChHHHHHHHHHHHhcCCCCHHHH
Q 011652 336 --------------------------VAPNSRTCNIILNGLI------------GRGETDEAYRVFRRMIKLCEADADTY 377 (480)
Q Consensus 336 --------------------------~~p~~~~~~~l~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~ 377 (480)
..+|..+.-.|.+.|. ..+..++|+++|..+.+..|.|...-
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA 649 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA 649 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence 1123333333333332 22456788888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh
Q 011652 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK-GIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 456 (480)
+.+.-.++..|++.+|..+|.++.+.... ...+|..+..+|...|++..|+++|+..... .-..+..+...|.+++.+
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987542 5568999999999999999999999998854 445577788999999999
Q ss_pred cCCHHHHHHHHHHHHhhhCC
Q 011652 457 EGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 457 ~g~~~~a~~~~~~~~~l~~~ 476 (480)
.|++.+|.+.+.....+.+.
T Consensus 729 ~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCCc
Confidence 99999999998888776654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-14 Score=140.86 Aligned_cols=189 Identities=11% Similarity=0.026 Sum_probs=111.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHH
Q 011652 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR 361 (480)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 361 (480)
..|++++|...|+++... +|+...+..+...+.+.|+.++|...+++..+.+.. +...+..+.......|++++|..
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHH
Confidence 444444444444444322 222223333344445555555555555555543211 11122222223334466777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011652 362 VFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIR 441 (480)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 441 (480)
.+++..+.. |+...|..+..++.+.|++++|...+++....... +...+..+..++...|+.++|+..+++..+.. +
T Consensus 598 ~~~~AL~l~-P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P 674 (987)
T PRK09782 598 DLTRSLNIA-PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-P 674 (987)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 766666533 34667777777777777777777777777766522 55666677777777777777777777777643 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 442 PSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 442 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
-+...+..+..++...|++++|...+++..++++.
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34556667777777788888888887777776654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-14 Score=143.09 Aligned_cols=356 Identities=10% Similarity=-0.020 Sum_probs=272.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHccCC---hh
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-G-VTQNLAAFNGLLSALCKSKN---VR 183 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~---~~ 183 (480)
..+...++...++.|-+..+-+......+.-.....|+.++|.++|+..... + ...+....+-++..|.+.+. ..
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 4467777777777777776667777888888888999999999999988762 1 23345556678888887766 33
Q ss_pred hHHHH----------------------HHHhhc---CCCC--ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChh
Q 011652 184 KAQEI----------------------FDCMKD---RFIP--DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV 236 (480)
Q Consensus 184 ~a~~~----------------------~~~~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (480)
++..+ .+.... ..++ +...|..+..++.. ++.++|...+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 33222 122222 2345 67788888888887 8899999988888765 36655
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 316 (480)
....+...+...|++++|...++++... +|+...+..+..++...|++++|...+++..+.. +.....+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 4444555667899999999999998665 4445556677788899999999999999998764 223333333444455
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011652 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKV 396 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 396 (480)
..|++++|...+++..+. .|+...+..+..++.+.|+.++|+..+++.....|.+...+..+..++...|++++|...
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 669999999999999986 456778899999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 397 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+++..+... -+...+..+..++...|++++|...+++..+.. |+. .+.........+..+++.|.+-+++.-.+.+
T Consensus 666 l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 666 LERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999998753 367889999999999999999999999999753 444 4444556666667777777777666555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-15 Score=132.76 Aligned_cols=391 Identities=13% Similarity=0.145 Sum_probs=210.0
Q ss_pred CCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----HHH
Q 011652 61 VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LN----VET 133 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~ 133 (480)
++-.++..+.+.+..... +|+..++.+.+..-|+.....--.+-+.+.+.+.+.+|+..|+-....-| .+ ...
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 333334444444443333 78889988877766655545555567788899999999999987766544 33 344
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc--C-----------CCCCh
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD--R-----------FIPDS 200 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-----------~~~~~ 200 (480)
.+.+...+.+.|.++.|+.-|+...+. .|+..+-..|+-++..-|+.++..+.|..|.. + ..|+.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 556666788999999999999998875 57777666666677788999999999998864 1 12222
Q ss_pred hhHHHHH-----HHhhcCCC--hhHHHHHHHHHHHcCCCCChhh---H------------------HHHHHHHHhcCCHH
Q 011652 201 KTYSILL-----EGWGKDPN--LPRAREIFREMVDTGCNPDIVT---Y------------------GIMVDVLCKAGRVD 252 (480)
Q Consensus 201 ~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~---~------------------~~l~~~~~~~g~~~ 252 (480)
...+..+ .-+-+.+. .++++-.--+++.--+.|+-.. | ..-..-+.+.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2222211 11111111 1111111111111112222100 0 00122356677777
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHH------------------------------------HHhhccCCHHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLV------------------------------------HTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~------------------------------------~~~~~~g~~~~a~~~~~~~ 296 (480)
.|++++..+.+.+-+.-...-+.|- ......|++++|.+.|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 7777777665543221111111110 1112346777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHH
Q 011652 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT 376 (480)
Q Consensus 297 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 376 (480)
......-....|| +.-.+-..|+.++|+..|-++... +..+..++..+...|....+...|++++-+....+|.|+.+
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHH
Confidence 6542221122222 222455566777776666554432 11133444444444555555555555555444444444444
Q ss_pred HH----------------------------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-Hh
Q 011652 377 YT----------------------------------MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL-CD 421 (480)
Q Consensus 377 ~~----------------------------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~ 421 (480)
.. -|...|....-++++..+|++..- +.|+..-|..++..| .+
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 44 444444444555555555554433 346666666555443 34
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011652 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
.|+++.|+.+++....+ ++.|...+..|++.+...|
T Consensus 673 sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 46666666666665542 4455555555665555555
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-13 Score=121.92 Aligned_cols=412 Identities=12% Similarity=0.064 Sum_probs=328.8
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011652 52 TALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNY--EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR 127 (480)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 127 (480)
..|+..|+.++.+....=...|...+. -+..+...+..- |. ..--.+|+.-...|.+.+-++-|..+|....+-.
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 345567777777766666666665555 233333322211 11 1234688888899999999999999999998888
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011652 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
+.+...|......--..|..+....+|++....- +-....|......+...|++..|..++.+.-+..+.+...|..-+
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 8788888888888788899999999999998863 555666777778888899999999999999887777889999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHH
Q 011652 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (480)
..-..+..++.|..+|.+.... .|+...|..-++.---.++.++|.+++++..+.- +.-...|-.+...+-+.++.+
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999998864 5677777777777777899999999999988762 334566778888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011652 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 367 (480)
.|...|..-.+. ++..+..|-.+...=-+.|..-.|..++++..-+++. +...|...|+.-.+.|+.+.|..++.++.
T Consensus 703 ~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 703 MAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888776554 4445667777777778888999999999999887655 77889999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 011652 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447 (480)
Q Consensus 368 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 447 (480)
+.++.+...|..-|....+.++-......+++- ..|++....+...|-...+++.|.+.|.+....+ ..+..+|
T Consensus 781 Qecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~w 854 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAW 854 (913)
T ss_pred HhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHH
Confidence 999999999999888888887766665555543 2477788888888989999999999999999865 3356789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 448 GKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..+.+.+.+.|.-++-.+++.+.....+.
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 99999999999999999999888766543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-13 Score=114.83 Aligned_cols=339 Identities=14% Similarity=0.156 Sum_probs=252.6
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHH
Q 011652 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSIL 206 (480)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l 206 (480)
|.+.+++..+|.++++--..+.|.++|++......+.+..+||.+|.+-.-..+ .+++.+|.. +..||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 357889999999999999999999999999887779999999999987654333 788888877 889999999999
Q ss_pred HHHhhcCCChhH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHhhh----CCC----CccHHHH
Q 011652 207 LEGWGKDPNLPR----AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE-ALGIVKSMDS----TVC----RPTSFIY 273 (480)
Q Consensus 207 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~~----~~~~~~~ 273 (480)
+++..+.|+++. |.+++.+|++-|++|...+|..+|..+++.++..+ +..++.++.. ..+ +.+...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56788899999999999999999999999888754 4444444432 222 2345667
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNG----ILAD---VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
...+..|....+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....++.|+-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888889899998888776665321 2222 234666777888889999999999999998888999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcC-CH--------H----H-HHHH-------HHHHHhCC
Q 011652 347 LNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGG-EL--------E----K-AFKV-------WKYMKLKR 404 (480)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g-~~--------~----~-a~~~-------~~~~~~~~ 404 (480)
+++..-.|.++-..++|..+.. +..-+......++..+++.. +. . + |..+ -.++....
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 9999999999999888888877 44444444444444444433 11 1 1 1111 11223333
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG----IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
......+.++-.+.+.|+.++|.++|.-+...+ ..|.......+++...+.....+|...++-+..
T Consensus 520 --~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 520 --WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred --CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345567777778899999999999999986543 233344444666777778888888888887744
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-13 Score=129.66 Aligned_cols=373 Identities=12% Similarity=0.087 Sum_probs=155.9
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|.+++..+.++.+ .....|..|...|-..|+.+++...+-.....++.+...|..+.....+.|++++|.-+|.+.+
T Consensus 157 eA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 157 EAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45555544444433 3444555555555555555555555444444444444555555555555555555555555555
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChh-----hHHHHHHHhhcCCChhHHHHHHHHHHHc-CCC
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK-----TYSILLEGWGKDPNLPRAREIFREMVDT-GCN 232 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~ 232 (480)
+.. |++....---...|-+.|+...|..-|.++....+|... .-..+++.+...++-+.|.+.++..... +-.
T Consensus 235 ~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 235 QAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred hcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 443 333333333344445555555555555554443222111 1112233344444444444444444331 112
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011652 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 312 (480)
.+...++.++..+.+...++.+......+......+|..-+..-= ...... ..+.. ...+..++..++. +.
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~----~~~~~~---~~~~~-~~~~~s~~l~v~r-l~ 384 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE----RRREEP---NALCE-VGKELSYDLRVIR-LM 384 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh----hccccc---ccccc-CCCCCCccchhHh-Hh
Confidence 233444445555555555555544444443311111110000000 000000 00000 0001111111211 11
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCC
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAP--NSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGE 389 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 389 (480)
-++......+....+.....+....| +...|.-+..++...|++.+|+.+|..+.. ..-.+...|-.+.++|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 12233333333333344444433222 334455555555555555555555555554 122234455555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHH
Q 011652 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI--------EKGIRPSGETFGKLRKLLIKEGRED 461 (480)
Q Consensus 390 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~ 461 (480)
+++|.+.++.+..... -+...-..|...+-+.|+.++|.+.+..+. ..+..|+..........+...|+.+
T Consensus 465 ~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 5555555555554321 133333444444555555555555555532 1223344444444445555555554
Q ss_pred HHH
Q 011652 462 VLK 464 (480)
Q Consensus 462 ~a~ 464 (480)
+-.
T Consensus 544 ~fi 546 (895)
T KOG2076|consen 544 EFI 546 (895)
T ss_pred HHH
Confidence 433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.9e-14 Score=129.55 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=61.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
++.....+...+...|+.++|.+.+++..+ .++++... ++.+....++.+++.+..+...+... -|...+..+...
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl 337 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQL 337 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 344444455555555555555555555444 23333211 12222233555555555555544331 133444455555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
|.+.|++++|.+.|+.+.+. .|+..++..+..++.+.|+.++|.+.+++-..
T Consensus 338 ~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 338 LMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555542 35555555555555555555555555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-14 Score=130.37 Aligned_cols=131 Identities=11% Similarity=-0.009 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCH--HHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF--CQGGELEKAFKVWKYMKLKRFIPSM--HTFSV 414 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ 414 (480)
+...+..+...+...|+.++|.+.+++..+..+.+......++..+ ...++.+.+.+.++...+... -|. ....+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~s 340 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRA 340 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHH
Confidence 3444444555555555555555555555543333322110111111 223445555555555444321 122 34445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555556666666666654333233455555555555666666666666555554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-13 Score=126.37 Aligned_cols=283 Identities=10% Similarity=0.085 Sum_probs=200.2
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHH--HHHHHhhcCCChhHHH
Q 011652 144 VQKVEEAVYTFNVMQKYGVTQNLAA-FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS--ILLEGWGKDPNLPRAR 220 (480)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 220 (480)
.|+++.|.+.+....+.+ +++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 477777777766655432 12222 323334446777777777777777653 33332222 3356677777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccH-------HHHHHHHHHhhccCCHHHHHHHH
Q 011652 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS-------FIYSVLVHTYGVENRIEDAVDTF 293 (480)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~ 293 (480)
..++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777765422 4566667777777778888888777777776543222 12333333334444556666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 011652 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD 373 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 373 (480)
+.+.+. .+.++.....+...+...|+.++|..++.+..+. .|+... .++.+....++.+++.+..+...+..|.|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 666443 2447778888899999999999999999998875 444422 23344446699999999999999988899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+..+..+.+.+.+.+++++|.+.|+.+.+.. |+...+..+...+.+.|+.++|..++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999998864 8999999999999999999999999998764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-13 Score=124.10 Aligned_cols=409 Identities=10% Similarity=0.043 Sum_probs=279.5
Q ss_pred CHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011652 62 SPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 139 (480)
.+..+..+-..+.+.|+ .++.++-.+... -+.|...|-.+.....+.|++++|.-.|.+..+..|++...+.--+.
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSS 249 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 44455556666666666 455554433333 33577999999999999999999999999999999999888888899
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHH----HHHHHHccCChhhHHHHHHHhhc--CCCCChhhHHHHHHHhhcC
Q 011652 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG----LLSALCKSKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 213 (480)
.|-+.|+...|...|.++.....+.|..-... .+..+...++-+.|.+.++.... ....+...+++++..+.+.
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN 329 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence 99999999999999999988653333333333 34556677778999999988776 5566778899999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhH----------------------H----HHHHHHHhcCCHHHHHHHHHHhhhCC--
Q 011652 214 PNLPRAREIFREMVDTGCNPDIVTY----------------------G----IMVDVLCKAGRVDEALGIVKSMDSTV-- 265 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~----------------------~----~l~~~~~~~g~~~~a~~~~~~~~~~~-- 265 (480)
..++.|......+.....++|..-+ . .++-++......+....+........
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~ 409 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW 409 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC
Confidence 9999999999888763222222211 1 12223344444444444555555544
Q ss_pred CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHH
Q 011652 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNI 345 (480)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 345 (480)
..-+...|..+.++|...|.+.+|+.+|..+......-+...|-.+..+|...|.++.|...++..+...+. +...--.
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~ 488 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARIT 488 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhh
Confidence 333466788888899999999999999999887755556778888888999999999999999988876222 3344555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh---------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHH
Q 011652 346 ILNGLIGRGETDEAYRVFRRMIK---------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-----PSMHT 411 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~ 411 (480)
|...+.+.|+.++|.+.+..+.. ...|...........+.+.|+.++-..+..+|...... |+..-
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k 568 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKK 568 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 66677888999999988888542 23455555566677778888888877777776653211 11111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---------------------H----HHHHHHHHHHHhcCCHHHHHHH
Q 011652 412 FSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS---------------------G----ETFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------------~----~~~~~l~~~~~~~g~~~~a~~~ 466 (480)
-.....+-...+...+-......|...+...+ . ..+..++.++.+.|++++|..+
T Consensus 569 ~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~v 648 (895)
T KOG2076|consen 569 KRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSV 648 (895)
T ss_pred HHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11111111223445555555666666643210 0 1234556778888888888888
Q ss_pred HHHHHhh
Q 011652 467 QEKMNLL 473 (480)
Q Consensus 467 ~~~~~~l 473 (480)
...+...
T Consensus 649 v~~a~~~ 655 (895)
T KOG2076|consen 649 VFTALEA 655 (895)
T ss_pred HHHHHhh
Confidence 7776553
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-13 Score=128.08 Aligned_cols=290 Identities=10% Similarity=0.039 Sum_probs=188.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCCh-hhHHHHHHHhhcCCChhHHH
Q 011652 143 RVQKVEEAVYTFNVMQKYGVTQN-LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILLEGWGKDPNLPRAR 220 (480)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 220 (480)
..|+++.|.+.+....+.. |+ ...+-....++...|+.+.|.+.+.+..+..+.+. .........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4567777777776665542 33 22333445556666777777777777654322221 23333466666677777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHh---hccCCHHHHHHHHHHHH
Q 011652 221 EIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTY---GVENRIEDAVDTFLEME 297 (480)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~ 297 (480)
..++.+.+.++. +...+..+...+...|++++|.+++..+.+.+..++......-..++ ...+..+...+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777765422 44556666777777777777777777777665332222111111111 22222222333444443
Q ss_pred HCCC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh---HHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 011652 298 KNGI---LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT---CNIILNGLIGRGETDEAYRVFRRMIKLCE 371 (480)
Q Consensus 298 ~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 371 (480)
+... +.+...+..+...+...|+.++|..++++..+.. |+... ...........++.+.+.+.++...+..+
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 3211 1377788888889999999999999999998863 33331 12222223445778888999988888777
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 372 ADA--DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 372 ~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777 788899999999999999999999644444458888899999999999999999999998653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=140.78 Aligned_cols=262 Identities=14% Similarity=0.155 Sum_probs=90.7
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
.+...+.+.|++++|++++++......+| +...|..+...+...++++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34555556666666666664443332112 33334444445555666666666666666554 2244445555555 566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhCCChHHHHHH
Q 011652 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRV 362 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~ 362 (480)
+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6677776666655443 2345556666666777777777777777765432 234555666667777777777777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011652 363 FRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 442 (480)
++++.+..|.|......++..+...|+.+++.++++...... +.|...+..+..+|...|+.++|+.+|++..... +.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 777777666677777777777777777777777776665542 2344566677777777777777777777777643 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
|+.+...+..++...|+.++|.++.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 666667777777777777777777766543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-12 Score=110.83 Aligned_cols=388 Identities=12% Similarity=0.041 Sum_probs=291.2
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|..+|+.+..... .+...|...+..-.+++.+..|..++++....-|--...|...+..--..|++..|.++|++..
T Consensus 91 RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 91 RARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 69999999876553 6888999999999999999999999999988776455667777777788999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc-CC-CCChh
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT-GC-NPDIV 236 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~ 236 (480)
+. .|+..+|++.+..=.+-+.++.|..++++..-- .|++.+|--....=.+.|++..|..+|+...+. |- ..+..
T Consensus 169 ~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 169 EW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred cC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 75 799999999999999999999999999998764 489999999999999999999999999887643 10 01122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhC-------------------------------------------CCCccHHHH
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDST-------------------------------------------VCRPTSFIY 273 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------------------------------~~~~~~~~~ 273 (480)
.+.+....-.+...++.|.-+|.-.... .-+.|-.+|
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 2333332222333444444443322211 113455566
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----HH---HHcCCHhHHHHHHHHHHhCCCCCChhhH
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADV--AMYNALIG-----AF---CKANKFKNVYRVLKDMNSKGVAPNSRTC 343 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~-----~~---~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 343 (480)
-..++.-...|+.+...++|++.... ++|-. ..|...|- ++ ....+.+.+.++++...+. ++....||
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtF 403 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTF 403 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchH
Confidence 66777777889999999999998865 34421 11222221 11 2367888899999888874 33345566
Q ss_pred HHHHHH----HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 344 NIILNG----LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 344 ~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
..+--. ..++.++..|.+++..+. |.-|-..++...|..-.+.++++.+.+++++..+-+.. |..+|......-
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AI-G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE 481 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAI-GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHh-ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHH
Confidence 554443 356788999999998877 45677788888899999999999999999999987744 778888888877
Q ss_pred HhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 420 CDKGIVSDSCVLLEDMIEKG-IRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
...|+.+.|..+|+-+++.. +......|.+.|+.-...|.++.|..+++++.+...
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 88899999999999988653 333345688888888899999999999999887643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=139.33 Aligned_cols=225 Identities=14% Similarity=0.139 Sum_probs=60.3
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
.+.......++++.|.+.++++...+.. +...+..++.. ...+++++|.++++...+. .++...+...+..+...+
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHh
Confidence 3333333444444444444444433221 22233333333 3444444444444433322 123333344444444444
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 285 RIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
+++++..+++.+.... .+.+...|..+...+.+.|+.++|...+++..+..+. |......++..+...|+.+++.+++
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 4444444444433221 1223444444444445555555555555554443211 2334444444444555555544444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011652 364 RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (480)
+...+..+.++..+..+..+|...|+.++|...+++...... .|+.....+..++...|+.++|.++.+++
T Consensus 204 ~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 204 KRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHT---------------
T ss_pred HHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 444443344444444555555555555555555555444321 14444444455555555555555544443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.1e-12 Score=113.88 Aligned_cols=389 Identities=10% Similarity=0.043 Sum_probs=250.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAM----RTKRM-LNVETFCIIMRKYARVQKVEEAVYT 153 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 153 (480)
.|.++++.+.+. .+.+...|.+-...--.+|+.+....++++- ...|. .+...|..=...|-..|..-.+..+
T Consensus 424 nAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAI 501 (913)
T KOG0495|consen 424 NAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAI 501 (913)
T ss_pred HHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHH
Confidence 477788887654 3468888888888888889998888887764 44566 7777777777777777777777777
Q ss_pred HHHHHhcCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC
Q 011652 154 FNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 154 ~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (480)
....+..|+... ..+|+.-...|.+.+.++-|..+|....+-++-+...|......--..|..++...+|++....-
T Consensus 502 i~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~- 580 (913)
T KOG0495|consen 502 IRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC- 580 (913)
T ss_pred HHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-
Confidence 777766665432 34666666777777777777777777776666666667666666666666777777777766542
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011652 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL 311 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 311 (480)
+-....|.....-+-..|+...|..++....+.. +.+...|-..+..-....+++.|..+|.+.... .|+...|.--
T Consensus 581 pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs 657 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKS 657 (913)
T ss_pred CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHH
Confidence 2244445555555666677777777776666554 335566666666666666677777666666543 3445555444
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 390 (480)
+..---.++.++|.+++++..+. .|+ ...|..+.+.+-+.++.+.|.+.|..-.+.+|..+..|-.|...--+.|++
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence 44444456666666666666554 223 234555555555566666666666555555555555565555555555666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----------------------------CCC
Q 011652 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK-----------------------------GIR 441 (480)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------------------~~~ 441 (480)
-+|..++++..-++.. +...|...|+.-.+.|+.+.|..++.++++. ...
T Consensus 736 ~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce 814 (913)
T KOG0495|consen 736 VRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE 814 (913)
T ss_pred hhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc
Confidence 6666666655554432 5555555666656666655555544444321 124
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 442 PSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 442 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.|+.++..+...+....+++.|+++|++..+.+..
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 56777888888888899999999999998887654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-12 Score=111.43 Aligned_cols=290 Identities=11% Similarity=0.073 Sum_probs=198.9
Q ss_pred hCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHH
Q 011652 144 VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREI 222 (480)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (480)
.|++.+|+++..+-.+.+ +.....|..-..+.-..|+.+.+-..+.+..+ ...++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666666555 22334444455555666666667666666655 2344555566666666666777777766
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccH-------HHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 223 FREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS-------FIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
++++.+.+.. .........++|.+.|++.....++..+.+.+.-.+. .+|..++.-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666665433 4455566666777777777777777777666544332 3455566655555556665566666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHH
Q 011652 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375 (480)
Q Consensus 296 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 375 (480)
.... .+.++..-..++.-+.+.|+.++|.++..+..+++..|+ .. ..-.+.+.++...-.+..+.-.+..+.++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5443 334566677778888899999999999999888876665 22 222356777888777777777777777888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 442 (480)
.+.+|.+.|.+.+.+.+|...|+...+.+ |+..+|..+..++.+.|+..+|.++.++....-..|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999777654 888999999999999999999999888877443333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-13 Score=116.31 Aligned_cols=160 Identities=16% Similarity=0.256 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011652 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG 349 (480)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 349 (480)
..+...+...|....+..+|++++-+.... ++.|+.....+...|-+.|+-..|++.+-+-.+- ++-+..+...+...
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ay 635 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAY 635 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHH
Confidence 333344444555555555555555544332 4456777777777788888877777776555443 34467777888888
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC-QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
|....-+++++.+|++.. .+.|+..-|..++..|. +.|++.+|..+++....+ ++-|......|++.+...|. .++
T Consensus 636 yidtqf~ekai~y~ekaa-liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~ 712 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAA-LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDA 712 (840)
T ss_pred HHhhHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhH
Confidence 888888888888888765 46799999988876655 589999999999998775 55688888888888877773 344
Q ss_pred HHHHHH
Q 011652 429 CVLLED 434 (480)
Q Consensus 429 ~~~~~~ 434 (480)
.++-.+
T Consensus 713 key~~k 718 (840)
T KOG2003|consen 713 KEYADK 718 (840)
T ss_pred HHHHHH
Confidence 444333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-11 Score=117.98 Aligned_cols=317 Identities=11% Similarity=0.041 Sum_probs=139.7
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
.|.+.|..+.++++ +++-.+---.......+++..|..+|......++ .-+.....+...+++.|+.+.|+..|.+.
T Consensus 148 ~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 34455555444433 3333333333333444555555555555444443 22222223334445555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCC---hhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC--
Q 011652 158 QKYGVTQNLAAFNGLLSALCKSKN---VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN-- 232 (480)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 232 (480)
.+.+ |.++.++..|...-....+ +..+..++...-...+.++.+.+.|.+.+.-.|+++.++.+...+......
T Consensus 226 lqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 226 LQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 5433 1222222222222111121 333444444443334445555555555555555555555555555432100
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011652 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 312 (480)
.-...|-.+.++|-..|++++|..+|.+..+....-....+.-+...+...|+++.+...|+.+.+.. +.+..+...+.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG 383 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 01223444555555555555555555555443211112223344555555555555555555554431 12333444444
Q ss_pred HHHHHcC----CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-----cCCCCHHHHHHHHHH
Q 011652 313 GAFCKAN----KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-----LCEADADTYTMMIKM 383 (480)
Q Consensus 313 ~~~~~~~----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~ 383 (480)
..|...+ ..+.|..++.+..+.- ..|...|-.+...+... ++..++..+..+.. +.++.+...|.+...
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 4443332 2344444444444332 11334444444443332 22222444444332 233445555555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011652 384 FCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~ 401 (480)
+...|++++|...|....
T Consensus 462 hf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHhcChHHHHHHHHHHh
Confidence 555555555555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-14 Score=127.58 Aligned_cols=286 Identities=12% Similarity=0.063 Sum_probs=146.1
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHH-
Q 011652 182 VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG--CNPDIVTYGIMVDVLCKAGRVDEALGIV- 258 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~- 258 (480)
..+|...|..+.....-+..+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+-.+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 4455555555444333344444555556666666666666666555432 01134455554433321 1111111
Q ss_pred HHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011652 259 KSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
+.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+.... ...+|+.+..-+.....+|.|...|+..+....+
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 2222221 334555666666666666666666666666553211 4455555555555555666666666555543111
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
+-..|-.+...|.+.++++.|+-.|+.+.+..|.+.+....+...+-+.|+.++|+++++++...+.+ |+..-..-+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 12233334445566666666666666666555555555556666666666666666666666554433 33333334444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 419 LCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+...+++++|+..++++.+. ++.+...+..+.+.|.+.|+.+.|..-+--+..+++.
T Consensus 567 l~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 55556666666666666552 1222334445555666666666666655555555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-11 Score=108.15 Aligned_cols=357 Identities=11% Similarity=0.041 Sum_probs=216.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHH--HHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF--NGL 172 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 172 (480)
.|+..+-...-.+.+.|....|+..|......-|....+|..|...... ++....+.. |.+.+.... -.+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHh-cCcccchHHHHHHH
Confidence 3444444444556677888888888888877666665556555444322 112222221 222221111 123
Q ss_pred HHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcC
Q 011652 173 LSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN--PDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 249 (480)
..++....+.+++.+-.+.... +++-+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 4455555667777776666666 45555555555555666677788888888888765311 155666665533 222
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011652 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
+-.-+ -+-+.....+ +--+.|+..+.+.|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|..-++
T Consensus 312 ~skLs-~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLS-YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHH-HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 21111 1111111111 233456667777777777888888888877776432 45567777777777777888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011652 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 409 (480)
..++-++. |-..|-.+.++|.-.+.+.-|+-.|+++.+--|.|...|.+|..+|.+.++.++|.+.|......|-. +.
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 77776433 66777778888887788888888888777766777778888888888888888888888877766533 55
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 011652 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRPS--GETFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 466 (480)
..+..+...|-+.++.++|...|++.++. |...+ ......|..-+.+.+++++|...
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 67777777787778888877777766541 32212 11122244445556666555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-13 Score=123.96 Aligned_cols=286 Identities=14% Similarity=0.093 Sum_probs=201.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC---CCCChhhHHHHHHHhhcCCChhHHHHH
Q 011652 146 KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGWGKDPNLPRAREI 222 (480)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (480)
+..+|+..|+.+.+. +..+..+...+..+|...+++++|+++|+.+.+. ...+.++|.+.+=.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 567777778775554 2334466667777888888888888888877662 223556666665544221 12222
Q ss_pred H-HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC
Q 011652 223 F-REMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301 (480)
Q Consensus 223 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (480)
+ +.+.+.. +-...+|..+.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+....++|.|...|+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 2 2233321 2256788888888888888888888888887764 336777888888888888888888888877653
Q ss_pred CCCHHHHH---HHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHH
Q 011652 302 LADVAMYN---ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378 (480)
Q Consensus 302 ~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 378 (480)
++..|+ -+...|.+.++++.|+-.|+...+.++. +.+....+...+.+.|+.++|+++++++....+.|+..--
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 444444 4556788888888888888888876544 5667777777788888888888888888886677777766
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
..+..+...+++++|+..++++++.- +-+...|..+...|.+.|+.+.|+.-|.-+.+...++..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 67777788888888888888888753 224566777788888888888888888888776544443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-12 Score=105.30 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=113.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHccCChh
Q 011652 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL------AAFNGLLSALCKSKNVR 183 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~ 183 (480)
.++.++|.++|-+|.+.++.+.++..+|.+.|-+.|..+.|+.+.+.+.++ ||. .+...|..-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 456677777777777766666666677777777777777777777776653 321 22334455556666666
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHH
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI----VTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
.|+.+|..+.+...--......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 6666666666532333444555666666666666666666665554333221 112222333333444455555555
Q ss_pred HhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
+..+.+ +.++..-..+.+.....|+++.|.+.++.+.+.+..--..+...+..+|...|+.++....+..+.+
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444432 2222233333444444444444444444444443222233344444444444444444444444444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-12 Score=108.21 Aligned_cols=290 Identities=15% Similarity=0.140 Sum_probs=206.9
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCC----CChhhHHHHHHHhhcCCChhH
Q 011652 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI----PDSKTYSILLEGWGKDPNLPR 218 (480)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 218 (480)
-+++.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|..++|+++.+.+..... .-......|.+-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567889999998888754 45566777888899999999999999988876311 112345567778888899999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcc----HHHHHHHHHHhhccCCHHHHHHHHH
Q 011652 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT----SFIYSVLVHTYGVENRIEDAVDTFL 294 (480)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 294 (480)
|+.+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999998887542 2455677788899999999999999888887764443 2345556666667788888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCH
Q 011652 295 EMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA 374 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 374 (480)
+..+.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+.++.+. .+..
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-~~g~ 282 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-NTGA 282 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-cCCc
Confidence 88765322 333334455677888899999999988888866555677888888888899999888888887762 2333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHc
Q 011652 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD---KGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 438 (480)
..-..+.+........+.|...+.+-... +|+...+..++..-.. .|...+-+..++.|...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 44445555555555666666665554443 3888888888876543 35566677777777643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-11 Score=102.25 Aligned_cols=292 Identities=11% Similarity=0.003 Sum_probs=235.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 188 (480)
-.|+|.+|+++..+-.+.+......|..-+++--..|+.+.+-.++.+..+.--.++....-+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 36999999999999887776566667777888889999999999999998864366777777888889999999999999
Q ss_pred HHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 189 FDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI-------VTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
++++.+..+.++.+.....++|.+.|++.....++.++.+.|.--+. .+|+.+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 99999877889999999999999999999999999999998866543 35666666666556656655566665
Q ss_pred hhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChh
Q 011652 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341 (480)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 341 (480)
... .+.++..-..++.-+...|+.++|.++..+..+.+..|+ ...+ -.+.+-++...-.+..+.-.+... -++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~-~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHP-EDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCC-CChh
Confidence 443 245566677888889999999999999999998877665 2222 245567777777777777665522 2557
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 407 (480)
.+.++...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++....-.+|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999997665 67999999999999999999999999999876543333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-10 Score=102.30 Aligned_cols=384 Identities=11% Similarity=0.095 Sum_probs=267.5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
-|.++|+... ..+|+...|++.|+.-.+.+.++.|..+|++..--. |+..+|....+---+.|+...|..+|+...
T Consensus 159 gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3677774332 245788888888888888888888888888776433 677777777777777788888888887776
Q ss_pred hc-CC-CCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCC--hhhHHHHHHHhhcCCChhHHHHH--------HHHH
Q 011652 159 KY-GV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPD--SKTYSILLEGWGKDPNLPRAREI--------FREM 226 (480)
Q Consensus 159 ~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~ 226 (480)
+. |- ..+...+.+....=.++..++.|.-+|.-.....|.+ ...|..+...=-+.|+.....+. |+.+
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 53 10 1112234444444445666777777777776655544 45566665555556665444433 3444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccH-H------HHHHHHHHh---hccCCHHHHHHHHHHH
Q 011652 227 VDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS-F------IYSVLVHTY---GVENRIEDAVDTFLEM 296 (480)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~------~~~~l~~~~---~~~g~~~~a~~~~~~~ 296 (480)
.+.+ +-|-.+|--.++.-...|+.+...+++++....- +|-. . .|.-+-.++ ....+.+.+.++|+..
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4443 3366777778888888899999999999998764 4421 1 121111111 3567899999999998
Q ss_pred HHCCCCCCHHHHHHHHHHH----HHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 011652 297 EKNGILADVAMYNALIGAF----CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372 (480)
Q Consensus 297 ~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 372 (480)
.+. ++....||.-+=-.| .++.+...|.+++..... ..|-..+|...|..-.+.++++.+..++++..+-.|.
T Consensus 393 l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 393 LDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred Hhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 873 444555665544444 467789999999988764 5788889999999999999999999999999998888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011652 373 DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF-IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 373 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
+..+|......-...|+.+.|..+|.-+.+... ......|-..|..-...|.++.|..+++++++.. +...+|.+..
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA 547 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHH
Confidence 999999999988999999999999999887521 1123456666776678899999999999999753 3344666665
Q ss_pred HHHH-----hcC-----------CHHHHHHHHHHHHhh
Q 011652 452 KLLI-----KEG-----------REDVLKFLQEKMNLL 473 (480)
Q Consensus 452 ~~~~-----~~g-----------~~~~a~~~~~~~~~l 473 (480)
..-. ..| ....|..++++....
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 4333 333 456777777776553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-11 Score=106.96 Aligned_cols=330 Identities=9% Similarity=0.014 Sum_probs=238.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChh--hHHHH
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK--TYSIL 206 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l 206 (480)
.|...+......+.+.|....|++.|...... .|-.-.+|..|.... .+.+.+..+ ..+.+.+.. .---+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l----~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSIL----VVGLPSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHH----HhcCcccchHHHHHHH
Confidence 44444444555566778888888888777653 244444554444332 233333222 222222211 11224
Q ss_pred HHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CccHHHHHHHHHHhhccC
Q 011652 207 LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC--RPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 284 (480)
..++-...+.+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+.+. -.|..+|+.++..-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 455566668888888888888888776655555566667778899999999999988741 125566766654433222
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 011652 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 364 (480)
...---.....+.+ -.+.|...+.+-|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+.++
T Consensus 314 kLs~LA~~v~~idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHhcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 22111111111111 23456777778888899999999999999987544 45678888899999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 365 RMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
++.+..|.|...|-.|.++|.-.+...-|+-.|++...... -|...|.+|..+|.+.++.++|++.|.+....| ..+.
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 99999999999999999999999999999999999998753 388999999999999999999999999999866 3467
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
..+..+.+.+.+.++.++|...+++-.+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88999999999999999999999887663
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-11 Score=104.78 Aligned_cols=386 Identities=13% Similarity=0.077 Sum_probs=238.9
Q ss_pred HHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHS-VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
.|+++|+|+.... |+ +.-|......|...|+|++..+--....+.+|.-..++..-.+++-..|++++|+.=..-.
T Consensus 133 eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ 209 (606)
T KOG0547|consen 133 EAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVL 209 (606)
T ss_pred HHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHH
Confidence 6888888876553 45 7778888888888888888888777777776655666666666777777777765332211
Q ss_pred H-hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhh-----------------------c-
Q 011652 158 Q-KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG-----------------------K- 212 (480)
Q Consensus 158 ~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~- 212 (480)
- -.|+. +..+--.+=+.+-+.+ ...+.+-+..=....-|+.....+....+. .
T Consensus 210 ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l 287 (606)
T KOG0547|consen 210 CILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEAL 287 (606)
T ss_pred HHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHH
Confidence 1 11111 1111000000000000 011111111000011122222222222110 0
Q ss_pred ----CCChhHHHHHHHHHHHcC-CCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 011652 213 ----DPNLPRAREIFREMVDTG-CNPD-----------IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL 276 (480)
Q Consensus 213 ----~~~~~~a~~~~~~~~~~~-~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (480)
...+..|.+.+.+-.... ..++ ..+...-...+.-.|+.-.|..-|+..+.....++ ..|.-+
T Consensus 288 ~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~ 366 (606)
T KOG0547|consen 288 EKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKR 366 (606)
T ss_pred HhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHH
Confidence 112233333332221100 0111 11111122233446788888888888887753333 337777
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCh
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 356 (480)
..+|....+.++....|.+....+.. ++.+|..-.+.+.-.+++++|..-|++.+...+. +...|-.+..+..+.+.+
T Consensus 367 a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~ 444 (606)
T KOG0547|consen 367 AAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKI 444 (606)
T ss_pred HHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHH
Confidence 78889999999999999998876543 5667777777788888999999999998886333 455666666677788899
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHH--HHHHHHHHhcCChHHHH
Q 011652 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-----PSMHTF--SVLINGLCDKGIVSDSC 429 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~--~~l~~~~~~~g~~~~A~ 429 (480)
++++..|++..+.+|..+..|+.....+...+++++|.+.|+..++.... .++..+ -.++. +.-.+++..|.
T Consensus 445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~ 523 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAE 523 (606)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHH
Confidence 99999999999999999999999999999999999999999988765311 122222 12221 12348899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 430 VLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 430 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.+++++.+.+.+ ....+..+...-...|+.++|.++|++...+-
T Consensus 524 ~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 524 NLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999875433 34457888888899999999999999876654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.3e-11 Score=113.99 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=132.1
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHhh---------cCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011652 182 VRKAQEIFDCMKDRFIPDSKTYSILLEGWG---------KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+++|...|++..+..|.+...|..+..++. ..+++++|...+++..+.+.. +...+..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHH
Confidence 445555555555544444444444443322 223456666666666654322 4455555556666666777
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
+|...+++..+.+ +.+...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|...++++.
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 7777776666654 334555666666666667777777777766655322 12222223334555666777777776665
Q ss_pred hCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHH
Q 011652 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHT 411 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~ 411 (480)
....+-+...+..+..++...|+.++|...++++....+.+....+.+...|...| ++|...++.+.+. ...|....
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~ 511 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPG 511 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCch
Confidence 54221133345555566666777777777776655544444444555555556555 3566655555432 11122122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 412 FSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 512 ~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 512 L--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2 22334444555555444 665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.5e-11 Score=114.73 Aligned_cols=268 Identities=10% Similarity=0.035 Sum_probs=158.1
Q ss_pred CCCCCHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---------ccCChhhHHHHHHH
Q 011652 126 KRMLNVETFCIIMRKYAR-----VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC---------KSKNVRKAQEIFDC 191 (480)
Q Consensus 126 ~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~ 191 (480)
..+.+.+.|...+++-.. .+..++|+++|++..+.. |.+...|..+..++. ..+++++|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 333555555555554322 123567777777777653 334445555544433 22346777777777
Q ss_pred hhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHH
Q 011652 192 MKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271 (480)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (480)
..+..+.+...+..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.... +..
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 77766667777777777777777888888888777765422 3556666777777778888888888777766422 222
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHH
Q 011652 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGL 350 (480)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 350 (480)
.+..++..+...|++++|...+++..+...+.+...+..+..++...|+.++|...+.++... .|+ ....+.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 233334445556777888887777765432223445566666777788888888887776554 233 23334444455
Q ss_pred HhCCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 351 IGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
...| +.|...++.+.+. ..+....+ +-..|.-.|+.+.+... +++.+.
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 5555 4666666666552 11221222 33444455666555555 666654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-10 Score=106.10 Aligned_cols=293 Identities=14% Similarity=0.172 Sum_probs=180.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc--
Q 011652 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS-- 179 (480)
Q Consensus 102 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-- 179 (480)
.....+...|++++|++.++.-...-+.....+......+.+.|+.++|..+|..+++.+ |.+..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345567888999999999988655544556677788889999999999999999999986 55555666666665222
Q ss_pred ---CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChh-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011652 180 ---KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP-RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 180 ---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
.+.+....+++++.... |.......+.-.+.....+. .+..++..+...|++ .+|+.+-..|....+..-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 25677788888887655 33333333322222222332 455566677777765 35666666666555555555
Q ss_pred HHHHHhhhC----C----------CCccH--HHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 011652 256 GIVKSMDST----V----------CRPTS--FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD-VAMYNALIGAFCKA 318 (480)
Q Consensus 256 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 318 (480)
+++...... + -+|+. .++..+...|...|++++|++.+++.+++. |+ +..|..-.+.+-..
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHC
Confidence 555554321 1 12333 233445566666777777777777766652 33 55666666667777
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCCHH------H--HHHHHHHHHhcCC
Q 011652 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADAD------T--YTMMIKMFCQGGE 389 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~------~--~~~l~~~~~~~g~ 389 (480)
|++.+|...++.....+.. |...=+..+..+.+.|+.++|.+++....+ +..|... . ......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777776665443 555555566666677777777777666655 2122111 1 1344566666677
Q ss_pred HHHHHHHHHHHHh
Q 011652 390 LEKAFKVWKYMKL 402 (480)
Q Consensus 390 ~~~a~~~~~~~~~ 402 (480)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-10 Score=101.08 Aligned_cols=199 Identities=15% Similarity=0.063 Sum_probs=120.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011652 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350 (480)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 350 (480)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 344455555555666666666665555432 123445555555666666666666666666554322 334455555566
Q ss_pred HhCCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 351 IGRGETDEAYRVFRRMIKL--CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
...|++++|.+.++.+... .+.....+..+..++...|++++|.+.+++...... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666551 223344556666777777777777777777766532 2455666677777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 429 CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 429 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
...++++.+. .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777777665 2344555656667777777777777777766544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-11 Score=103.15 Aligned_cols=196 Identities=9% Similarity=0.056 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+..+...+...|++++|.+.+++.....+.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45555566666666666666666666665555555556666666666666666666666665543 33444555555555
Q ss_pred HccCChhhHHHHHHHhhcC--CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
...|++++|.+.+++.... .+.....+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 5666666666666655431 1112233444444444555555555555544433211 223344444444444444444
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
...+++.... .+.+...+..+...+...|+.++|..+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444433 122233333333444444444444444333
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-09 Score=98.39 Aligned_cols=287 Identities=11% Similarity=0.031 Sum_probs=206.7
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011652 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (480)
..++.....-..-+...+++.+..++++.+.+..+++...+..-|.++...|+..+-..+=.++.+.- +-...+|-.+.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 44455555556666777888888888888888878888888888888888888888777777777653 33577888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 011652 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 322 (480)
--|...|+..+|.+.|.+....+ +.-...|..+..+|+-.|..|+|...+....+.= +-..--+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 77777888888888888776654 2335567788888888888888888877765431 001111222334577788888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011652 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL-------CEADADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~ 395 (480)
.|.+.|.+.....+ -|+...+-+.-.....+.+.+|..+|+..... .+--..+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 88888888876532 26666666666666778888888888877641 11134467888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 396 VWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
.+++......+ +..++..+.-.|...|+++.|.+.|.+.+. +.|+..+...++..+..
T Consensus 477 ~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 477 YYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 88888876533 778888888888888888888888888874 56777766666654443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.9e-10 Score=103.27 Aligned_cols=291 Identities=14% Similarity=0.092 Sum_probs=143.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC---
Q 011652 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD--- 213 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 213 (480)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+....|.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 344556667777777776554432 2333444555566666677777777777776666565666666666655222
Q ss_pred --CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHH
Q 011652 214 --PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD-EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290 (480)
Q Consensus 214 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (480)
.+.+...++|+++...- |.......+.-.+.....+. .+..++..+...|+|+ +|+.+-..|......+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 23455566666655432 33333322221222211222 3334444455555322 3444444444444444444
Q ss_pred HHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhC
Q 011652 291 DTFLEMEKN----G----------ILADV--AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGR 353 (480)
Q Consensus 291 ~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 353 (480)
+++...... + -+|+. .++..+...|...|++++|...+++..+. .|+ +..|..-.+.+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 444443221 0 11222 23334445555556666666666655554 232 34455555555556
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCh
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH------TF--SVLINGLCDKGIV 425 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~ 425 (480)
|++.+|.+.++.+......|...-+-.+..+.++|++++|.+++......+..|-.. +| .....+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 666666666666555445555555555555556666666666655555444322211 11 1223445555555
Q ss_pred HHHHHHHHHH
Q 011652 426 SDSCVLLEDM 435 (480)
Q Consensus 426 ~~A~~~~~~~ 435 (480)
..|++-|...
T Consensus 322 ~~ALk~~~~v 331 (517)
T PF12569_consen 322 GLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-11 Score=115.34 Aligned_cols=89 Identities=15% Similarity=0.244 Sum_probs=54.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC
Q 011652 153 TFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (480)
++-.+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.- ..+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3444555666666666666666666666666666 6666654 33445556666666666666655544
Q ss_pred CCChhhHHHHHHHHHhcCCHHH
Q 011652 232 NPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.|...||..+..+|...||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 4566666666666666666544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-08 Score=93.70 Aligned_cols=381 Identities=13% Similarity=0.096 Sum_probs=203.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
+|...-....+... .+.+.|+.+.-.+...+++++|+..|......++.|...|.-+.-.-++.|+++........+.
T Consensus 59 ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL 136 (700)
T KOG1156|consen 59 EAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL 136 (700)
T ss_pred HHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45444444433222 4556666666666666677777777777766666666666666666666666666666665555
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCC--CCChhhHHHHH------HHhhcCCChhHHHHHHHHHHHcC
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF--IPDSKTYSILL------EGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~ 230 (480)
+.. +.....|..+..++.-.|+...|..+++...+.. .|+...|.... ....+.|..+.|.+.+..-...
T Consensus 137 ql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 137 QLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred Hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 532 2233445566666666677777777776666522 34444443322 2334456666666655544322
Q ss_pred CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHH-HHHHHHhhccCCHHHHH-HHHHHHHHCCCCCCHHH
Q 011652 231 CNPDIVT-YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY-SVLVHTYGVENRIEDAV-DTFLEMEKNGILADVAM 307 (480)
Q Consensus 231 ~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~ 307 (480)
+ .|... -.+-...+.+.+++++|..++..+... .||...| ..+..++.+-.+.-++. .+|....+.- |....
T Consensus 215 i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~ 289 (700)
T KOG1156|consen 215 I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHEC 289 (700)
T ss_pred H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--ccccc
Confidence 1 12222 223345566667777777777777665 3443333 33344443222222333 4444444321 11111
Q ss_pred HHHHHHHHHH-cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh---c------------CC
Q 011652 308 YNALIGAFCK-ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---L------------CE 371 (480)
Q Consensus 308 ~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~------------~~ 371 (480)
-..+-..... ..-.+....++..+.+.|+++- +..+...|-.....+-..++.-.+.. + -+
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 0000001111 1112233344555555555432 23333322222211111122211111 1 14
Q ss_pred CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 011652 372 ADADTY--TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM-HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG 448 (480)
Q Consensus 372 ~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 448 (480)
|+...| ..+++.|-+.|+++.|...++...++- |+. ..|..-.+.+.+.|+.++|..++++..+.+ .||...-.
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INs 443 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINS 443 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHH
Confidence 555544 456777778888888888888887753 443 455555677888888888888888888765 34555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 449 KLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.-++...++.+.++|.++.-+..+-+
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhcc
Confidence 67777788888888888877665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=105.56 Aligned_cols=240 Identities=17% Similarity=0.166 Sum_probs=166.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----C-CCccHH-HHHHHHHHhhccCCHHHHHHHHHHHHHC-----CCC
Q 011652 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDST-----V-CRPTSF-IYSVLVHTYGVENRIEDAVDTFLEMEKN-----GIL 302 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~ 302 (480)
..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++... |-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555777888888888888887776543 1 122222 2334677888888888888888887532 211
Q ss_pred -C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CCC-CCh-hhHHHHHHHHHhCCChHHHHHHHHHHHhc----
Q 011652 303 -A-DVAMYNALIGAFCKANKFKNVYRVLKDMNSK-----GVA-PNS-RTCNIILNGLIGRGETDEAYRVFRRMIKL---- 369 (480)
Q Consensus 303 -~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 369 (480)
| -..+++.|..+|.+.|++++|...+++..+- |.. |.. ..++.+...+...+++++|..+++...+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 2446677777888999988888877766442 211 121 23566677788889999999988887761
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 011652 370 CEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RF--IP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIE- 437 (480)
Q Consensus 370 ~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 437 (480)
..+ -..+++.|...|...|++++|.++++++... +. .+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 122 2467889999999999999999999987642 11 11 245677888889899999999988887653
Q ss_pred ---cCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 438 ---KGI-RPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 438 ---~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.|. .|+ ..+|..|...|.+.|+++.|.++.+.+...+
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 232 222 3468889999999999999999998887544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-09 Score=93.14 Aligned_cols=357 Identities=12% Similarity=0.048 Sum_probs=233.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccC
Q 011652 102 SMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN-LAAFNGLLSALCKSK 180 (480)
Q Consensus 102 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 180 (480)
...+-+.++|++++|++.|.......+..+..|.....+|...|+++++++--...++.+ |+ +..+.--.+++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhc
Confidence 345667889999999999999988776557788889999999999999999888887753 43 445555566777778
Q ss_pred ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHH--------HHH-cC--CCCChhhHHHHHHHHHh--
Q 011652 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE--------MVD-TG--CNPDIVTYGIMVDVLCK-- 247 (480)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~-~~--~~~~~~~~~~l~~~~~~-- 247 (480)
++++|+.=..- ..+...+....-...+.+++.+ -.+ .+ +-|+.....+....+..
T Consensus 198 ~~~eal~D~tv------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 198 KFDEALFDVTV------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred cHHHHHHhhhH------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 87776532221 1122222222222222222221 111 11 22332222222222110
Q ss_pred -----------------------cC---CHHHHHHHHHHhhhC-CCCc--c---------HHHHHHHHHHhhccCCHHHH
Q 011652 248 -----------------------AG---RVDEALGIVKSMDST-VCRP--T---------SFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 248 -----------------------~g---~~~~a~~~~~~~~~~-~~~~--~---------~~~~~~l~~~~~~~g~~~~a 289 (480)
.+ .+..|...+.+-... -..+ + ..+...-...+.-.|+.-.|
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 01 222222222221110 0011 1 11222222334556888889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 369 (480)
..-|+..++....++ ..|--+...|....+.++....|......+.. ++.+|..-.+.+.-.+++++|..=|++....
T Consensus 346 ~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999888754433 33666677889999999999999999887654 6777887777788888999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCCH
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG-----IRPSG 444 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~ 444 (480)
.+.+...|..+..+..+.+.++++...|++.+++ ++--+..|+.....+...++++.|.+.|...++.. +..+.
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 7788888888888888999999999999999876 44467899999999999999999999999988642 11222
Q ss_pred HHH--HHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 445 ETF--GKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 445 ~~~--~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..+ ..++-.-. .+++.+|..++++..+++++
T Consensus 503 ~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 503 APLVHKALLVLQW-KEDINQAENLLRKAIELDPK 535 (606)
T ss_pred hhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch
Confidence 222 22332223 38899999999999888764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-11 Score=100.72 Aligned_cols=228 Identities=12% Similarity=0.032 Sum_probs=118.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
+.+.++|.+.|.+.+|.+.++..++. .|-..||..+-+.|.+..++..|+.++.+-.+. ++-++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34555555555555555555555443 234445555555555555555555555555443 122222223344555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
++.++|.++|+...+.. +.++.....+...|.-.++.+.|+..++++.+.|.. ++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555555432 223444444444555555555566666555555554 4555555555555555555555555
Q ss_pred HHHHhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 364 RRMIKL---CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 364 ~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.+.... ...-..+|..+....+..|++.-|.+.|+-...++.. +...++.|.-.-.+.|+.++|..+++.+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555541 1122344555555555556666666666555544422 445555555555555666666666555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-08 Score=91.45 Aligned_cols=131 Identities=17% Similarity=0.085 Sum_probs=114.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
|......+.+.+..++|...+.+..+..+..+..|......+...|..++|.+.|......+.. ++....++...+.+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHh
Confidence 4455667788899999999999999888889999999999999999999999999998876532 567888899999999
Q ss_pred CChHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 423 GIVSDSCV--LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 423 g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.++|.+.|....++..
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 98888887 999999877 45789999999999999999999999999988864
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-09 Score=98.51 Aligned_cols=285 Identities=12% Similarity=0.027 Sum_probs=230.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
+......-...+-..+++.+..++.+.+.+.. |+....+..-|.++...|+..+-..+=.++....|..+.+|-.+.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 45556666677778899999999999998875 77888888888899999999888888888888889999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHH
Q 011652 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (480)
|.-.|+..+|.+.|.+....... =...|......|.-.|..++|...+...-+.- +-..--+--+.--|.+.+.++.|
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999998754211 24578888899999999999999887765531 11111122344567788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----C--CCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK----G--VAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
.+.|.+.... .+.|+..++-+.-.....+.+.+|..+|+..+.. + ......+++.|..+|.+.+..++|+..+
T Consensus 400 e~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 9999998865 3447778888888788889999999999887732 1 1124456888999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 364 RRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
+......+.+..++.++.-.|...|+++.|.+.|.+..-. .|+..+-..++..+.
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764 478777666666443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-10 Score=97.76 Aligned_cols=231 Identities=12% Similarity=0.048 Sum_probs=196.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHH
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM-YNALIGAFCK 317 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~ 317 (480)
+.+.++|.+.|.+.+|.+.++..... .|-+.||..|-+.|.+..++..|+.++.+-.+. .|...| ..-+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56889999999999999999998876 677788999999999999999999999998875 344444 4556678888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
.++.++|.++++...+.... +......+...|.-.++++-|+.+++++.+....++..|+.+.-+|...++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999887433 66777777888889999999999999999977789999999999999999999999999
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 398 KYMKLKRFIPS--MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 398 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
++....--.|+ ...|..+.....-.|++.-|.+.|+-.+..+ ..+...++.|.-.-.+.|++++|+.+++......+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 98886544444 3678888888889999999999999998765 34567888888888999999999999998877654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-08 Score=89.15 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 132 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
..|.+|...|++.|.++.|.++|++....
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 36788999999999999999999877653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-08 Score=86.95 Aligned_cols=380 Identities=9% Similarity=0.030 Sum_probs=229.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
-|+.+++..... +-+-...+-.++...+.+.|++++|...+..+.+..-++.+.+..|.-.+.-.|.+.+|..+-....
T Consensus 40 GAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 40 GAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred hHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 577777765422 1111223444466777899999999999999988777888888888888888999999998876643
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhH
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (480)
+ ++-.-..++....+.++-++-..+.+.+.. ...---.|.......-.+++|+++|.+....+ |+-...
T Consensus 119 k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~al 187 (557)
T KOG3785|consen 119 K-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIAL 187 (557)
T ss_pred C-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhh
Confidence 3 334445566666777887777776666654 22333344444445567899999999998753 444445
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHH--------------CC---
Q 011652 239 GIM-VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK--------------NG--- 300 (480)
Q Consensus 239 ~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------~~--- 300 (480)
|.. .-+|.+..-++-+.+++....+. ++.++...+..+....+.=.-..|.+-.+.+.. ++
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 543 34677888888888888877765 244444555444333322111122222222211 11
Q ss_pred ---------CCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-----------------
Q 011652 301 ---------ILAD-----VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG----------------- 349 (480)
Q Consensus 301 ---------~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~----------------- 349 (480)
+-|. +..--.++--|.+.+++.+|..+.+++... .|-......++.+
T Consensus 267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 0010 111222334567788888888877665432 2222222222211
Q ss_pred ------------------------HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011652 350 ------------------------LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405 (480)
Q Consensus 350 ------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 405 (480)
+.-..++++.+..++.+..-...|...--.+.++++..|++.+|+++|-.+..-.+
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i 424 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI 424 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh
Confidence 11112233333333333332222222223577888888999999999988776555
Q ss_pred CCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhhCCC
Q 011652 406 IPSMHTFSV-LINGLCDKGIVSDSCVLLEDMIEKGIRPSGET-FGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 406 ~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
+ |..+|.. +.++|.+.|.++-|+.++-++-. ..+..+ +..+..-|.+.+.+--|-+.+..+..+++.|
T Consensus 425 k-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 425 K-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred h-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 5 5566655 55688899999999887765532 222223 3445677888999888888999998888876
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-07 Score=83.59 Aligned_cols=384 Identities=13% Similarity=0.143 Sum_probs=200.0
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 81 FCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+..|+.+...-+.......|...+......+-++.+..++++..+- ++..-.-.|..++..+++++|-+.+......
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~~~eeyie~L~~~d~~~eaa~~la~vln~ 198 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---APEAREEYIEYLAKSDRLDEAAQRLATVLNQ 198 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CHHHHHHHHHHHHhccchHHHHHHHHHhcCc
Confidence 3444444333333333445555555555556666666666665544 3333455566666677777776666655322
Q ss_pred ------CCCCCHHHHHHHHHHHHccCChh---hHHHHHHHhhcCCCCC-hhhHHHHHHHhhcCCChhHHHHHHHHHHHcC
Q 011652 161 ------GVTQNLAAFNGLLSALCKSKNVR---KAQEIFDCMKDRFIPD-SKTYSILLEGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 161 ------~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (480)
..+.+...|..+-...++..+.- ....++..+...++.. ...|+.|.+.|.+.|.+++|.++|++....
T Consensus 199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~- 277 (835)
T KOG2047|consen 199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT- 277 (835)
T ss_pred hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 11334444555544444433322 2333344433332211 245667777777777777777777665542
Q ss_pred CCCChhhHHHHHHHHHh---------------------------------------------------------------
Q 011652 231 CNPDIVTYGIMVDVLCK--------------------------------------------------------------- 247 (480)
Q Consensus 231 ~~~~~~~~~~l~~~~~~--------------------------------------------------------------- 247 (480)
..+..-|..+.++|+.
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV 356 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV 356 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh
Confidence 1122222222222211
Q ss_pred ---cCCHHHHHHHHHHhhhCCCCc------cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 011652 248 ---AGRVDEALGIVKSMDSTVCRP------TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD---VAMYNALIGAF 315 (480)
Q Consensus 248 ---~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 315 (480)
.|+..+....+.+..+.- .| ....|..+.+.|-..|+++.|..+|++..+-..+.- ..+|......=
T Consensus 357 ~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 357 KLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME 435 (835)
T ss_pred hhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 123333333343333221 11 123456667777777777777777777765433211 23444444555
Q ss_pred HHcCCHhHHHHHHHHHHhCCCC----------C-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHH
Q 011652 316 CKANKFKNVYRVLKDMNSKGVA----------P-------NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYT 378 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 378 (480)
.++.+++.|++++++....... | +...|...+...-..|-++....+++++...--.++....
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~ 515 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII 515 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5666777777777665432111 1 1223444445455566777777777777763334444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHH--HHHH
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSM-HTFSVLINGLCDK---GIVSDSCVLLEDMIEKGIRPSGETFG--KLRK 452 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~ 452 (480)
.....+-...-++++.+++++-+..-..|++ ..|+..+.-+.+. ...+.|..+|+++++ |.+|...-+. ....
T Consensus 516 NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 516 NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 4444555566677777777765554333444 4566666555432 357788888888887 5555443222 2223
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011652 453 LLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 453 ~~~~~g~~~~a~~~~~~~~ 471 (480)
.-.+.|....|..++++..
T Consensus 595 lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3334566777777777654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-08 Score=86.82 Aligned_cols=282 Identities=11% Similarity=-0.015 Sum_probs=117.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011652 80 AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
|.+.|-.+.....++.|+.....+...+...|+.++|+..|++....++-+........-.+.+.|+.++...+...+..
T Consensus 215 a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~ 294 (564)
T KOG1174|consen 215 ASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA 294 (564)
T ss_pred hhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh
Confidence 33333333333344445555555555555555555555555555444443333333333333444444444444444433
Q ss_pred cCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHH
Q 011652 160 YGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239 (480)
Q Consensus 160 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (480)
.. .-+...|-.-+......++++.|+.+-++..+..+.+...|-.-...+...++.++|.-.|+...... +-+...|.
T Consensus 295 ~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~ 372 (564)
T KOG1174|consen 295 KV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYR 372 (564)
T ss_pred hh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHH
Confidence 21 12222222223333334445555555544444333344444444444445555555555555444321 11344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHH-HHhhcc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 011652 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV-HTYGVE-NRIEDAVDTFLEMEKNGILAD-VAMYNALIGAFC 316 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 316 (480)
-++..|...|++.+|.-+-....+. ++.+..+.+.+. ..+... .--++|.++++.-.+. .|+ ....+.+...+.
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHH
Confidence 5555555555555544444333222 122222322221 111111 1123344444443322 222 222333334444
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 317 KANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
..|..+.+..+++..... .||...-+.+...+...+.+.+|++.|..+..
T Consensus 450 ~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444445555544444432 34444444444444444444444444444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.4e-10 Score=104.12 Aligned_cols=338 Identities=14% Similarity=0.128 Sum_probs=209.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH
Q 011652 89 KQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA 167 (480)
Q Consensus 89 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 167 (480)
+..|..|+..+|..+|.-|+..|+.+.|- +|..|..+.. .+...|+.++.+....++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 45588899999999999999999999998 9999988877 78888999999988888877765 68889
Q ss_pred HHHHHHHHHHccCChhh---HHHHHHHhhcCCCC----ChhhHHH---------------HHHHhhcCCChhHHHHHHHH
Q 011652 168 AFNGLLSALCKSKNVRK---AQEIFDCMKDRFIP----DSKTYSI---------------LLEGWGKDPNLPRAREIFRE 225 (480)
Q Consensus 168 ~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~----~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~ 225 (480)
+|..|..+|...||+.. .++.++.+...+.+ ....|-. .+....-.|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999554 33333333221111 1111111 11112222333333333333
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH
Q 011652 226 MVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305 (480)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (480)
+..... + .++...++-+.... .-..++........-.|++.+|..++++-.-.|+.+.|..++.+|.+.|.+.+.
T Consensus 165 ~Pvsa~--~-~p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 165 VPVSAW--N-APFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CCcccc--c-chHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 321100 0 01111233333322 223333333332222689999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
+-|..++-+ .++..-++.++.-|.+.|+.|+..|+..-+..+..+|....+... .+....+++-+..-+
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~--------sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG--------SQLAHGFTAAVRSAA 308 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc--------cchhhhhhHHHHHHH
Confidence 888887755 788888999999999999999999999988888876553222221 222222233233222
Q ss_pred hcCCHHHHHHHHH------------HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCC-CHHHHHHH
Q 011652 386 QGGELEKAFKVWK------------YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG--IRP-SGETFGKL 450 (480)
Q Consensus 386 ~~g~~~~a~~~~~------------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l 450 (480)
-.| ..|.+.++ +..-.|+.....+|.... -...+|+-++..++-..+..-. +.+ +...+..+
T Consensus 309 ~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~ 385 (1088)
T KOG4318|consen 309 CRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL 385 (1088)
T ss_pred hcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH
Confidence 233 22222222 212224433334444333 3445788888888888776322 222 23446565
Q ss_pred HHHHHhc
Q 011652 451 RKLLIKE 457 (480)
Q Consensus 451 ~~~~~~~ 457 (480)
+.-|++.
T Consensus 386 lrqyFrr 392 (1088)
T KOG4318|consen 386 LRQYFRR 392 (1088)
T ss_pred HHHHHHH
Confidence 6666553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-07 Score=79.38 Aligned_cols=301 Identities=11% Similarity=0.074 Sum_probs=208.1
Q ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011652 133 TFCIIMRKYA--RVQKVEEAVYTFNVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 133 ~~~~li~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
+....+.+++ -.++...|...+-.+... -++-++.....+..++...|+..+|+..|++...-.+.+........-.
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH
Confidence 3344444443 345555555555444332 3566777788888889999999999999988876545455555555556
Q ss_pred hhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHH
Q 011652 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (480)
+.+.|+++....+...+.... .-+...|-.-........+++.|+.+-++.++.. +.+...+..-...+...|+.++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHH
Confidence 667888888777777776432 1233344444445556678888888888887764 44555565556777888899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH-HHH-HhCCChHHHHHHHHHHH
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL-NGL-IGRGETDEAYRVFRRMI 367 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~ 367 (480)
.-.|+...... +-+...|.-++..|...|.+.+|..+-+...+. ++.+..+...+. ..| -....-++|.++++...
T Consensus 354 ~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 354 VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 98888877652 236788999999999999998888777665543 222444444331 222 22234577888888877
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 368 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
+..|.-....+.+...+...|..+.+..+++..... .||....+.|.+.+...+.+++|...|..++..+
T Consensus 432 ~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 432 KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 765666677788888888899999999999887764 3788888899999999999999999998887643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-07 Score=87.27 Aligned_cols=400 Identities=12% Similarity=0.107 Sum_probs=259.6
Q ss_pred CCHHHHHHHHHHHhhCcH---HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHH
Q 011652 61 VSPEIVEDVLEKFRNAGT---LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCII 137 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 137 (480)
+-+.+.-+|+..+.+... +|++-|..+..... .|...|.-+.-.-.+.|+++.....-....+..+.....|..+
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 334445566666655554 89999988876543 6788888877777888999988888888888777778889999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCCCHHHHHHHH------HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYG-VTQNLAAFNGLL------SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
..++.-.|+...|..+++...+.. ..|+...+.... ......|..++|.+.+......+......-.+-...+
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHH
Confidence 999999999999999999987754 246665554333 3345678888888888776654444444455667788
Q ss_pred hcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHHH-HHHHHhhhCCCCccHHHHHHH-HHHhhccCCHH
Q 011652 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC-KAGRVDEAL-GIVKSMDSTVCRPTSFIYSVL-VHTYGVENRIE 287 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~ 287 (480)
.+.++.++|..++..++.. .||...|...+..+. +..+.-++. .+|....+. .|....-..+ +.......-.+
T Consensus 230 ~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHH
Confidence 8999999999999999986 477766666554443 333333443 556555443 1111111111 11111122233
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CC----------CCCChh--hHHHHHHHHH
Q 011652 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS----KG----------VAPNSR--TCNIILNGLI 351 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----------~~p~~~--~~~~l~~~~~ 351 (480)
....++..+.+.|+++- +..+...|-.-...+-..++...+.. .| -+|... ++..++..+-
T Consensus 306 ~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred HHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 44556666677776543 33343333322222211222222211 11 134443 3445677788
Q ss_pred hCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011652 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL 431 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 431 (480)
..|+++.|..+++.+....|.-+..|..-.+.+...|.+++|..++++..+.+. ||...-..-..-..++++.++|.++
T Consensus 383 ~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHH
Confidence 899999999999998876666667777778999999999999999999988763 3554444566667788999999999
Q ss_pred HHHHHHcCCCCCHH--------HHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 011652 432 LEDMIEKGIRPSGE--------TFGKL--RKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 432 ~~~~~~~~~~p~~~--------~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
.....+.|. +.. .|-.+ ..+|.+.|++..|.+=+..+.+
T Consensus 462 ~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 462 LSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 988887664 221 12111 4577788887777665555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.8e-09 Score=82.61 Aligned_cols=194 Identities=14% Similarity=0.036 Sum_probs=92.3
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
+.-.|...|++..|..-+++..+... .+..++..+...|.+.|..+.|.+-|++....... +..+.|....-+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 33444455555555555555444321 13334444444555555555555555555443222 33344444444445555
Q ss_pred hHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 356 TDEAYRVFRRMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 356 ~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
+++|...|++... ....-..+|..+.-+..+.|+.+.|...|++..+.+.. ...+...+.....+.|++..|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 5555555555444 22233344555555555555555555555555544322 23344444445555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 434 DMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 434 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.....+. ++...+...|+.-.+.|+-+.+.++-..+.++
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5544432 45555544555555555555555554444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.2e-09 Score=82.78 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=143.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
+...+.-.|...|++..|..-+++..+.++.+..+|..+...|-+.|..+.|.+.|+...+.. +.+-.+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344456677788888888888888888888778888888888888888888888888877764 4566777777778888
Q ss_pred cCChhhHHHHHHHhhc--CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011652 179 SKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 256 (480)
.|.+++|...|++... .......+|..+.-+..+.|+++.|...|++.++.... ...+...+.+...+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 8888888888887766 33445567777777777888888888888877765422 34456666777777778888777
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011652 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
.++.....+. ++....-..|+.-...|+-+.+-+.=.++..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777776653 6666666666666677777766665555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-08 Score=88.63 Aligned_cols=199 Identities=13% Similarity=-0.032 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHH--
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LN-VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG-- 171 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 171 (480)
...|..+...+...|+.+.+.+.+....+..+ .+ ..........+...|++++|.+.++...+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44555555666666777776666666554444 22 2222233344556678888888887776653 334444432
Q ss_pred -HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011652 172 -LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR 250 (480)
Q Consensus 172 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 250 (480)
+.......+....+.+.+.......+........+...+...|++++|...+++..+... .+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 111112234444455544442222233334444555666777777777777777776532 234555666667777777
Q ss_pred HHHHHHHHHHhhhCCCC-ccH--HHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011652 251 VDEALGIVKSMDSTVCR-PTS--FIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 251 ~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
+++|...+++....... ++. ..|..+...+...|++++|..++++..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77777777766654211 121 234455666667777777777777664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=76.31 Aligned_cols=49 Identities=41% Similarity=0.806 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.8e-09 Score=95.88 Aligned_cols=238 Identities=14% Similarity=0.146 Sum_probs=171.8
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHc-----C-CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHhhhC-----C-
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDT-----G-CNPDIVT-YGIMVDVLCKAGRVDEALGIVKSMDST-----V- 265 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~- 265 (480)
-..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666888888888888888888876643 2 1223222 234667788889999988888887542 1
Q ss_pred -CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC---
Q 011652 266 -CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-----GIL-AD-VAMYNALIGAFCKANKFKNVYRVLKDMNSK--- 334 (480)
Q Consensus 266 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 334 (480)
.+.-..+++.|..+|.+.|++++|...++...+- |.. |. ...++.+...++..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1223456777888899999999888877775421 111 12 234566777888899999999998876542
Q ss_pred CCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 335 GVAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIKL--------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 335 ~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
-+.++ ..+++.+...|...|++++|+++++.+... ..-....++.|...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 357889999999999999999999998761 222346788899999999999999999987543
Q ss_pred ----CCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 403 ----KRFI-P-SMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 403 ----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
.|.. | ...+|..|...|...|++++|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3322 2 34689999999999999999999988876
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=76.10 Aligned_cols=50 Identities=32% Similarity=0.626 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-08 Score=89.86 Aligned_cols=226 Identities=8% Similarity=-0.040 Sum_probs=135.0
Q ss_pred CChhHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHH
Q 011652 214 PNLPRAREIFREMVDTG-CNPD--IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV 290 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (480)
+..+.++.-+.+++... ..|+ ...|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44556666666666432 1121 3446666667777788888887777777664 445677777777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 011652 291 DTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370 (480)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (480)
..|+...+.... +..++..+...+...|++++|...++...+.. |+..........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888877765322 45566667777777788888888888777653 332211111222344567788888886655433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK---RF--IP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
.++...+ . ......|+...+ +.++.+.+. .+ .| ....|..+...+.+.|++++|...|++..+.++ |+.
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~ 270 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNF 270 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chH
Confidence 3332222 2 222334554443 234433321 10 01 235677888888888888888888888887542 344
Q ss_pred HHHH
Q 011652 445 ETFG 448 (480)
Q Consensus 445 ~~~~ 448 (480)
.-+.
T Consensus 271 ~e~~ 274 (296)
T PRK11189 271 VEHR 274 (296)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-08 Score=85.21 Aligned_cols=328 Identities=12% Similarity=0.142 Sum_probs=216.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG-LLSALC 177 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~ 177 (480)
-+.+.+..+.+..+++.|++++..-.++.+.+......+...|....++..|-..++.+-.. -|...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 35566666778889999999999988888878888999999999999999999999998764 455444433 245566
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhh--HHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKT--YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
+.+.+..|+.+...|... ++... ...-.......+++..+..++++....| +..+.+...-...+.|+++.|.
T Consensus 90 ~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 788899999999888753 22222 2222223345788888888888876433 4444555444556889999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC-------------H---------------HH
Q 011652 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD-------------V---------------AM 307 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~---------------~~ 307 (480)
+-|+...+.+--.+...|+..+ ++.+.|+++.|++...+++++|++.. + ..
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 9999887765455556676554 45567899999999999998887631 1 11
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMNSKG-VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
+|.-...+.+.|+++.|.+-+.+|..+. ...|++|...+.-.- ..+++-+..+-+.-+....|-...||..++-.||+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 2222223566788888888887775432 344666665544322 23445555555555555556667888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 011652 387 GGELEKAFKVWKYMKLKRFI-PSMHTFSVLINGLC-DKGIVSDSCVLLEDMI 436 (480)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 436 (480)
..-++-|..++.+-...-.. .+...|+ ++.++. -.-..++|.+-++.+.
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888888887654322111 1333343 333333 3345667766665554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-08 Score=81.54 Aligned_cols=398 Identities=9% Similarity=0.011 Sum_probs=254.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHH
Q 011652 57 SGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF 134 (480)
Q Consensus 57 ~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 134 (480)
.|..+....+..++..+.++.+ .|+++...-.+..+ .+....+.+...|-+..++..|-+.++++....| ...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-ELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHH
Confidence 3555555667777777776666 67887766544433 4778888888899999999999999999987765 22222
Q ss_pred H-HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhh
Q 011652 135 C-IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL--SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211 (480)
Q Consensus 135 ~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (480)
. --...+.+.+.+.+|+.+...|.+. +....-..-+ ......+++..+..++++.... .+..+.+...-...
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gClly 155 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchheee
Confidence 2 2345667889999999999888763 3322211112 2234678999999999998742 25556666666778
Q ss_pred cCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc-------------cH--------
Q 011652 212 KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP-------------TS-------- 270 (480)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~-------- 270 (480)
+.|+++.|.+-|+...+-|--.....|+..+- ..+.|+++.|++...++...|++. |.
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 89999999999999887654445677887764 456799999999999998876431 11
Q ss_pred -------HHHHHHHHHhhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh
Q 011652 271 -------FIYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342 (480)
Q Consensus 271 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 342 (480)
..+|.-...+.+.|+++.|.+.+-+|.-+ ....|+.|...+.-. -..+++.+..+-+.-+.+.++- ...|
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ET 312 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPET 312 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHH
Confidence 12233334456789999999999888532 234566776655422 2245666777777777776553 4678
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTMMIKMFC-QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
|..++-.|++..-++.|-.++.+-.. -.-.+...|+ ++.++. ..-..++|.+-+..+...- ....-...+..-
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQ 388 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 99999999999999999888876432 1123344444 334444 3457788887776654320 111111122211
Q ss_pred -HhcCChHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 420 -CDKGIVSDS----CVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 420 -~~~g~~~~A----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.+..+-+++ ++-+++.++. -..+..+-...+.+..++..++++|++-.+.
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 122222222 2223332221 1223334455677788888898888876543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-08 Score=89.44 Aligned_cols=93 Identities=15% Similarity=-0.035 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (480)
|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|...|++..+..+.+..+|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3333334444444444444444444332 223334444444444444444444444444333233333444444444444
Q ss_pred CChhHHHHHHHHHH
Q 011652 214 PNLPRAREIFREMV 227 (480)
Q Consensus 214 ~~~~~a~~~~~~~~ 227 (480)
|++++|.+.|++..
T Consensus 146 g~~~eA~~~~~~al 159 (296)
T PRK11189 146 GRYELAQDDLLAFY 159 (296)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-07 Score=85.50 Aligned_cols=305 Identities=10% Similarity=-0.025 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCCH-HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHH--
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV-TQNL-AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSI-- 205 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 205 (480)
....|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+++++..+..|.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~ 84 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHL 84 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhH
Confidence 344566666667777777777666666544321 1222 222223345567888999998888887765666655552
Q ss_pred -HHHHhhcCCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 206 -LLEGWGKDPNLPRAREIFREMVDTGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 206 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
........+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..... +.+...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 22222224445555555444 1112222 2333455567788888888988888888764 44566777788888888
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHhCCCh
Q 011652 284 NRIEDAVDTFLEMEKNGI-LADV--AMYNALIGAFCKANKFKNVYRVLKDMNSKGV-APNSRTC-N--IILNGLIGRGET 356 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~~~~ 356 (480)
|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888888776432 1222 2345667778888888888888888754322 1111111 1 222233333433
Q ss_pred HHHHHH--HHHHH-hcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhcC
Q 011652 357 DEAYRV--FRRMI-KLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP--------SMHTFSVLINGLCDKG 423 (480)
Q Consensus 357 ~~a~~~--~~~~~-~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~g 423 (480)
..+.++ +.... ...+ ...........++...|+.+.|..+++.+......+ ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333332 11111 1111 111222345666667777888888877765422110 1111222223345667
Q ss_pred ChHHHHHHHHHHHH
Q 011652 424 IVSDSCVLLEDMIE 437 (480)
Q Consensus 424 ~~~~A~~~~~~~~~ 437 (480)
+.++|.+.+.+...
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-06 Score=79.58 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HhCCHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA--RVQKVEEAVYTFNV 156 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~ 156 (480)
+|.+.-+.+.... +.+...+..-+-++.+.++|++|+.+.+.-.... ....| .+=.+|| +.++.++|+..++.
T Consensus 30 ~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~-~fEKAYc~Yrlnk~Dealk~~~~ 104 (652)
T KOG2376|consen 30 EAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSF-FFEKAYCEYRLNKLDEALKTLKG 104 (652)
T ss_pred HHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchh-hHHHHHHHHHcccHHHHHHHHhc
Confidence 5666666665432 3456666666667777777777775554322111 11111 0233333 56777777777762
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
.. +.+..+...-...+.+.|++++|..+|+.+.+
T Consensus 105 ~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 105 LD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred cc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 22 12233444555666777788888888877754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-07 Score=83.83 Aligned_cols=366 Identities=15% Similarity=0.110 Sum_probs=227.3
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|...|.......+ +|-..|+.-..+|+..|++++|.+=-.+.++..|.-+..|.-...++.-.|++++|+.-|.+-+
T Consensus 20 ~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL 97 (539)
T KOG0548|consen 20 TAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGL 97 (539)
T ss_pred HHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHh
Confidence 78999977766654 5889999999999999999999998888888888778889999999999999999999999988
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHH------HHhhc----CCCCChhhHHHHHHHhhcCC-------ChhHHHH
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIF------DCMKD----RFIPDSKTYSILLEGWGKDP-------NLPRARE 221 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~------~~~~~----~~~~~~~~~~~l~~~~~~~~-------~~~~a~~ 221 (480)
+.. +.+...++.+..++... . .+.+.| ..+.. ........|..++..+-+.. +.+...+
T Consensus 98 ~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 98 EKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred hcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 865 55666777888777211 0 011111 11110 00011122333332221110 0111111
Q ss_pred HHHHHH--------HcC-------CCC------------C----------hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011652 222 IFREMV--------DTG-------CNP------------D----------IVTYGIMVDVLCKAGRVDEALGIVKSMDST 264 (480)
Q Consensus 222 ~~~~~~--------~~~-------~~~------------~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (480)
..-.+. ..| ..| | ..-...+.++..+..+++.+++-+......
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 111110 011 111 0 011234566666777888888888877776
Q ss_pred CCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 011652 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA-------LIGAFCKANKFKNVYRVLKDMNSKGVA 337 (480)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (480)
. .+...++....+|...|.+......-....+.|.. ...-|+. +..+|.+.++++.+...|.+.....-.
T Consensus 254 ~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 254 A--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred h--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 4 45556677777888888888777777666655432 2222332 333566667788888888876654333
Q ss_pred CChhhHHH-------------------------HHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 011652 338 PNSRTCNI-------------------------ILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 338 p~~~~~~~-------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
|+...-.. -...+.+.|++..|...+.++++..|.|...|....-+|.+.|.+..
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence 33222111 12234567888888888888888778888888888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
|++-.+...+.+. +....|..-..++....++++|.+.|++.++.+ |+..-+...+.-|..
T Consensus 411 aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 411 ALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 8887777776642 244455555556666677888888888877643 444444433333333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-07 Score=78.62 Aligned_cols=350 Identities=11% Similarity=0.049 Sum_probs=219.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI-IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
+.-+....++..|+.+++.-...+.-....... +...+.+.|++++|...|..+.... .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 666777899999999998866544422323344 4455678999999999999888755 67777888888788888999
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
.+|..+-....+ ++..-..|.....+.++-++...+-+.+.+. ..--.++.......-.+.+|++++.++.
T Consensus 108 ~eA~~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 108 IEAKSIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988876653 5555566666777788877777766666542 2333445555555668999999999998
Q ss_pred hCCCCccHHHHHH-HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHhHHH--HH----------
Q 011652 263 STVCRPTSFIYSV-LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK--ANKFKNVY--RV---------- 327 (480)
Q Consensus 263 ~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~--~~---------- 327 (480)
.. .|+-...+. +.-+|.+..-++-+.++++-.... ++.+....|.......+ .|+..+.+ .+
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 76 345444444 345667788888888888876654 33345555554443333 23221111 11
Q ss_pred HHHHHhCCC------------CC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHH-------------
Q 011652 328 LKDMNSKGV------------AP-----NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTY------------- 377 (480)
Q Consensus 328 ~~~~~~~~~------------~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------- 377 (480)
.+.+.+.++ -| -+..-..++-.|.+.++..+|..+.+.+. |.++.-|
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhh
Confidence 111111110 01 11122334445778899999988877653 2222222
Q ss_pred ------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 011652 378 ------------------------------TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 378 ------------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (480)
.++..++.-..++++.+..++.+...-...|. .-..+.++++..|.+.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~-Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD-FNLNLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhHHHHHHHHhcChHH
Confidence 12333333334444455444444443222222 22347788888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 428 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
|.++|-+.....++.+..-...+.++|.+.|+.+.|..++-++
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 9999988876555544444456788999999999998887654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.2e-09 Score=89.96 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 011652 356 TDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV-SDSCVLLED 434 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 434 (480)
+.+|..+|+++....++++.+.+.+..++...|++++|.+++.+....+.. ++.+...++.+....|+. +.+.+++.+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 444444444444333344444444444444444444444444444333221 333333344433444433 333344444
Q ss_pred HH
Q 011652 435 MI 436 (480)
Q Consensus 435 ~~ 436 (480)
+.
T Consensus 262 L~ 263 (290)
T PF04733_consen 262 LK 263 (290)
T ss_dssp CH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-08 Score=88.69 Aligned_cols=252 Identities=14% Similarity=0.172 Sum_probs=166.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChh
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP 217 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (480)
++.+--.|++..++.-.+ .....-+.+......+.+++...|+.+. +..++.....|.......+...+...++-+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKSSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TTSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccCCChhHHHHHHHHHHHhCccchH
Confidence 344556788888887666 3322212234455567788888888664 445555544677777766766665545555
Q ss_pred HHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 011652 218 RAREIFREMVDTGCNPDIVTY-GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (480)
.+..-+++....+..++..++ ......+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666555554433333222233 33335667789999998888643 34566677788899999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 011652 297 EKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372 (480)
Q Consensus 297 ~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 372 (480)
.+. ..| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+.....+.
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 875 233 444445554433 33688999999998765 5567888888889999999999999999988877777
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 011652 373 DADTYTMMIKMFCQGGEL-EKAFKVWKYMKLK 403 (480)
Q Consensus 373 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 403 (480)
++.+...++.+....|+. +.+.+.+.++...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 888888888888888887 6677888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-06 Score=90.58 Aligned_cols=336 Identities=10% Similarity=0.039 Sum_probs=210.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCC-------CC--hhhHHHHHHHh
Q 011652 140 KYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI-------PD--SKTYSILLEGW 210 (480)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~--~~~~~~l~~~~ 210 (480)
.....|+++.+..+++.+.......+..........+...|+++++..++........ +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221112222333444556678999999998887754211 11 11222334455
Q ss_pred hcCCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---Cc--cHHHHHHHHHHhh
Q 011652 211 GKDPNLPRAREIFREMVDTGCNPDI----VTYGIMVDVLCKAGRVDEALGIVKSMDSTVC---RP--TSFIYSVLVHTYG 281 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 281 (480)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++...... .+ ...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763111121 2345556667789999999999888764211 11 1234455677788
Q ss_pred ccCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCC--ChhhHHHHHHHH
Q 011652 282 VENRIEDAVDTFLEMEK----NGIL--A-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKG--VAP--NSRTCNIILNGL 350 (480)
Q Consensus 282 ~~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p--~~~~~~~l~~~~ 350 (480)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998887654 2211 1 22334455566777899999999988875531 112 123344456677
Q ss_pred HhCCChHHHHHHHHHHHhc--CCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 011652 351 IGRGETDEAYRVFRRMIKL--CEADADTY-----TMMIKMFCQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLINGLC 420 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 420 (480)
...|+.+.|.+.+..+... .......+ ...+..+...|+.+.|...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 7899999999999888651 11111111 1122444567899999998877554221111 112345667788
Q ss_pred hcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 421 DKGIVSDSCVLLEDMIEK----GIRPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
..|++++|...++++... |..++ ..+...+..++.+.|+.++|.+.+.+..++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 899999999999988743 32222 23566677888899999999999999887654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-06 Score=77.81 Aligned_cols=321 Identities=13% Similarity=0.081 Sum_probs=208.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHH---HHHHHHHhc---CCCCCHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAV---YTFNVMQKY---GVTQNLAA 168 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~ 168 (480)
.-+..|+-...++.-.|++++|+.-|.+-.+..+.+...+.-+..++.......+.. .++..+... ........
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 457889999999999999999999999999988888888888888873221111110 111111110 00001122
Q ss_pred HHHHHHHHHcc----------CChhhHHHHHHHh------hc-------CCCC----------------------ChhhH
Q 011652 169 FNGLLSALCKS----------KNVRKAQEIFDCM------KD-------RFIP----------------------DSKTY 203 (480)
Q Consensus 169 ~~~ll~~~~~~----------~~~~~a~~~~~~~------~~-------~~~~----------------------~~~~~ 203 (480)
|..++..+-+. ..+..+.-.+... .. ...| -..-.
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 33333222111 0011111111110 00 0011 01124
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHH-------HH
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYS-------VL 276 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l 276 (480)
..+.+...+..++..|.+.+....... -+..-++....+|...|.+.++....+...+.|. -...-|+ .+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 567778888899999999999988764 3555566777788889988888777776655542 1222222 23
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHH-------------------------HHHHHHHHHcCCHhHHHHHHHHH
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMY-------------------------NALIGAFCKANKFKNVYRVLKDM 331 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~ 331 (480)
..+|.+.++++.++..|.+....-..|+...- ..-...+.+.|++..|...+.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 44667778899999988887654333332111 11133467889999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011652 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411 (480)
Q Consensus 332 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 411 (480)
+...+. |...|..-.-+|.+.|.+..|++-.+...+..++....|..=..++....++++|.+.|++..+.+ |+..-
T Consensus 385 Ikr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e 461 (539)
T KOG0548|consen 385 IKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAE 461 (539)
T ss_pred HhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHH
Confidence 998643 788999999999999999999999888888777777778777777777889999999999999876 55544
Q ss_pred HHHHHHHHHh
Q 011652 412 FSVLINGLCD 421 (480)
Q Consensus 412 ~~~l~~~~~~ 421 (480)
+.--+.-|..
T Consensus 462 ~~~~~~rc~~ 471 (539)
T KOG0548|consen 462 AIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHH
Confidence 4444443433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-05 Score=71.88 Aligned_cols=408 Identities=11% Similarity=0.111 Sum_probs=211.5
Q ss_pred CCCHHHHHHHHHHHhhCcH-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH
Q 011652 60 RVSPEIVEDVLEKFRNAGT-LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 138 (480)
+-+-+....+++.....+- +.+++++.+... ++.++..|..-|....+.++++..+.+|.++...- .+.+.|..-+
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHHHHH
Confidence 3445566667766654433 677777766544 34566777777777777788888888887776542 4555565555
Q ss_pred HHHHHh-CCHHH----HHHHHHHH-HhcCCCCC-HHHHHHHHHHH---------HccCChhhHHHHHHHhhcCCCCCh-h
Q 011652 139 RKYARV-QKVEE----AVYTFNVM-QKYGVTQN-LAAFNGLLSAL---------CKSKNVRKAQEIFDCMKDRFIPDS-K 201 (480)
Q Consensus 139 ~~~~~~-~~~~~----a~~~~~~~-~~~~~~~~-~~~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~~~~~~-~ 201 (480)
..--+. |+... -.+.|+-. .+.|+.+- -..|+..+..+ ....+++...+++.++...--.+. .
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 543322 22222 22333332 33443332 33455555433 223345556667776664211111 1
Q ss_pred hHH------HHHHHh-------hcCCChhHHHHHHHHHH--HcCCCCChhh---------------HHHHHHHHHhcC--
Q 011652 202 TYS------ILLEGW-------GKDPNLPRAREIFREMV--DTGCNPDIVT---------------YGIMVDVLCKAG-- 249 (480)
Q Consensus 202 ~~~------~l~~~~-------~~~~~~~~a~~~~~~~~--~~~~~~~~~~---------------~~~l~~~~~~~g-- 249 (480)
.|+ .-|+.. -+...+..|.++++++. -.|......+ |..+|.---..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 121 111111 12334556666666654 2232222111 222222111110
Q ss_pred ----CH--HHHHHHHHHh-hhCCCCccHHHH-----HHHHHHhhccCC-------HHHHHHHHHHHHHCCCCCCHHHHHH
Q 011652 250 ----RV--DEALGIVKSM-DSTVCRPTSFIY-----SVLVHTYGVENR-------IEDAVDTFLEMEKNGILADVAMYNA 310 (480)
Q Consensus 250 ----~~--~~a~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (480)
.. ....-.+++. .-.+..|+.... ...-+.+...|+ .+++..+++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111111111 112223332211 111122233332 4566777777655322334444444
Q ss_pred HHHHHHHcC---CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHH
Q 011652 311 LIGAFCKAN---KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LC-EADADTYTMMIKMFC 385 (480)
Q Consensus 311 li~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~l~~~~~ 385 (480)
+..---..- ..+.....++++...-..--..+|...++...+...+..|..+|.++.+ .. +.++.++++++..||
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 433211111 2555566666665542222234677777777777788888888888877 32 336667777777766
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 011652 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG--ETFGKLRKLLIKEGREDVL 463 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a 463 (480)
. ++..-|.++|+.-..+- .-++.--...+.-+.+.++-..|..+|++....++.|+. .+|..++..-..-|+.+.+
T Consensus 414 s-kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 S-KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred c-CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 4 56777888887544431 123334455666777778888888888888876555443 5688888877888888888
Q ss_pred HHHHHHHHh
Q 011652 464 KFLQEKMNL 472 (480)
Q Consensus 464 ~~~~~~~~~ 472 (480)
.++-+++..
T Consensus 492 ~~lekR~~~ 500 (656)
T KOG1914|consen 492 LKLEKRRFT 500 (656)
T ss_pred HHHHHHHHH
Confidence 777776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.3e-07 Score=84.39 Aligned_cols=311 Identities=9% Similarity=-0.003 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhh
Q 011652 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 193 (480)
.++++.+++..+.++.|+.+...+.--|+..++.+.|.+...+..+.+-..+...|..|.-++...+++..|+.+.+...
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 56778888888888866666667777778888888888888888887557788888888888888888888888888877
Q ss_pred cCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCccHH
Q 011652 194 DRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST--VCRPTSF 271 (480)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 271 (480)
+.++.|......-+..-...++.++++.....+...- + +.... ...++-....+....+.-. .......
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w-e-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW-E-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH-H-hhhhH-------hhhhhhhhhhhhhcccccCcccccccch
Confidence 6555555444444555555777777777766665310 0 00000 0111111122222221110 1111122
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhH
Q 011652 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILA--D------VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343 (480)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 343 (480)
++..+.......+........ +......| + ...|......+.+.+..++|...+.+..... .-....|
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~ 687 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVY 687 (799)
T ss_pred hhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHH
Confidence 232222222111110000000 11111111 1 2234455567788888899988888877652 2245566
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011652 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK--VWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
......+...|...+|.+.|.......|.++....++..++.+.|+..-|.. ++..+.+.+.. +...|..+...+-+
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKK 766 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 6666777888999999999999988778888899999999999998888888 99999988754 88999999999999
Q ss_pred cCChHHHHHHHHHHHHc
Q 011652 422 KGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 422 ~g~~~~A~~~~~~~~~~ 438 (480)
.|+.++|.++|+...+.
T Consensus 767 ~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 767 LGDSKQAAECFQAALQL 783 (799)
T ss_pred ccchHHHHHHHHHHHhh
Confidence 99999999999988754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8e-06 Score=69.85 Aligned_cols=304 Identities=10% Similarity=0.068 Sum_probs=206.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCCh-hhHHHHH
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-KTYSILL 207 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~ 207 (480)
.+..-..-+...+...|++..|+.-|...++.+ +.+-.++---...|...|+...|+.-+.+..+. +||- ..-..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-CccHHHHHHHhc
Confidence 445556677888888899999999998888642 222223333345677888888888888877764 3443 2233345
Q ss_pred HHhhcCCChhHHHHHHHHHHHcCCCCC--hhhH------------HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHH
Q 011652 208 EGWGKDPNLPRAREIFREMVDTGCNPD--IVTY------------GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (480)
..+.+.|.++.|..-|+..+++...-+ ...+ ...+..+...|+...|+.....+.+.. +.+...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 577889999999999999988643211 1111 123344566788899999888888764 6688888
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHH-------
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNII------- 346 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l------- 346 (480)
..-..+|...|++..|+.-++...+..- .+..++.-+-..+...|+.+.++...++..+. .||...+-..
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 8888999999999999888877766543 35566666777888889999999888888875 4554322111
Q ss_pred H------HHHHhCCChHHHHHHHHHHHhcCCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011652 347 L------NGLIGRGETDEAYRVFRRMIKLCEA-D---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 347 ~------~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
. ......+++.++.+-.+...+..+. . ...+..+-.++...|++.+|++...++.+... .|+.++.--.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRA 348 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHH
Confidence 1 1223456666666666665552221 1 22344555666677888888888888877542 2477777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 011652 417 NGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
.+|.-...+++|+.-|+.+.+.+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcC
Confidence 88888888888888888887653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.8e-06 Score=85.60 Aligned_cols=333 Identities=11% Similarity=0.029 Sum_probs=212.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CCCH--HHHHHHHHHHH
Q 011652 107 LAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV------TQNL--AAFNGLLSALC 177 (480)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~ll~~~~ 177 (480)
+...|+++.+..+++.+..... .++.........+...|+++++..++......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4455777777777766532211 2233334445556678999999999987754210 1111 12223334566
Q ss_pred ccCChhhHHHHHHHhhcCCCC-C----hhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC---C--ChhhHHHHHHHHHh
Q 011652 178 KSKNVRKAQEIFDCMKDRFIP-D----SKTYSILLEGWGKDPNLPRAREIFREMVDTGCN---P--DIVTYGIMVDVLCK 247 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~ 247 (480)
..|++++|...+++.....+. + ....+.+...+...|++++|...+.+.....-. + ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987652221 1 134456677778899999999999888643111 1 12344556677888
Q ss_pred cCCHHHHHHHHHHhhhC----CCC--c-cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHH
Q 011652 248 AGRVDEALGIVKSMDST----VCR--P-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG--ILA--DVAMYNALIGAFC 316 (480)
Q Consensus 248 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~ 316 (480)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876542 211 1 23334556667778899999999988875421 112 2334444566778
Q ss_pred HcCCHhHHHHHHHHHHhCCCCC-ChhhH-----HHHHHHHHhCCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHh
Q 011652 317 KANKFKNVYRVLKDMNSKGVAP-NSRTC-----NIILNGLIGRGETDEAYRVFRRMIKLCEADA----DTYTMMIKMFCQ 386 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~p-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 386 (480)
..|+.+.|...+.......... ....+ ...+..+...|+.+.|..++........... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421110 11111 1122444568899999999877654211111 124567788889
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 387 GGELEKAFKVWKYMKLK----RFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 387 ~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999987653 32222 2456667778899999999999999998653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-07 Score=86.78 Aligned_cols=218 Identities=10% Similarity=0.077 Sum_probs=169.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 318 (480)
..+...+...|-...|..+++++.. |..++.+|+..|+..+|..+..+..++ +|++..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 4566778888999999999887653 667788899999999998888887773 67888888888777666
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 398 (480)
.-+++|.++.+....+ .-..+.......++++++.+.|+...+..+....+|-.+..+..+.++++.|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 6678888887765443 111111222346888899999988888777888888888888888999999999888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.-....+ -+...|+.+-.+|.+.|+..+|...++++.+.+ .-+...|...+-...+.|.+++|.+.+.++.++++.
T Consensus 544 rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 544 RCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 8776542 256789999999999999999999999998776 446667777777788889999999999888877654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-06 Score=76.86 Aligned_cols=211 Identities=10% Similarity=0.001 Sum_probs=124.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (480)
+-..+...++.++|+.+.+.+.+.++.+..+|+.....+...| .+++++..++.+.+.+ +.+..+|+.-..++.+.|+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 3334445566677777777777666666666666655555665 4677777777776654 3444556554444444454
Q ss_pred h--hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CC----HH
Q 011652 182 V--RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA---GR----VD 252 (480)
Q Consensus 182 ~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~ 252 (480)
. +++..+++.+.+..+-|..+|+...-.+...|+++++++.++++++.++. +...|+.....+.+. |. .+
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 2 45666666666655667777777777777777777777777777766544 555555554444333 22 23
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVE----NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
+.++....+.... +-+...|+.+...+... +...+|.+.+.+..+.++ .+......++..|+.
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 4555555555443 44566666666666552 334556666666555432 255666666666664
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-07 Score=83.71 Aligned_cols=252 Identities=13% Similarity=0.068 Sum_probs=184.9
Q ss_pred HHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHH
Q 011652 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (480)
.-+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3456788899999899888876543 67788888888888888888888888888875 556777888888888999888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH---------HHHHHcCCHhHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhCCChH
Q 011652 288 DAVDTFLEMEKNGILADVAMYNALI---------GAFCKANKFKNVYRVLKDMN-SKGVAPNSRTCNIILNGLIGRGETD 357 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~ 357 (480)
.|++.++.......+ ..|...- ..+..........++|-++. ..+..+|+.+...|--.|--.|+++
T Consensus 371 ~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 999988887654211 0000000 01111112334445554443 4454577888888888888999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 358 EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
+|...|+.+....|-|..+||.|.-.++...+.++|+..|++..+.. |+ +.....|..+|...|.+++|.+.|-+++
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999998864 55 3566778888999999999999988776
Q ss_pred Hc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011652 437 EK---------GIRPSGETFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 437 ~~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 466 (480)
.. +..++..+|..|-.++.-.++.+-+.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 42 1223345777777677767776655443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-05 Score=76.09 Aligned_cols=203 Identities=17% Similarity=0.166 Sum_probs=88.2
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 011652 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279 (480)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (480)
+.+|..+..+-.+.|.+.+|.+-|-+.. |...|..+++...+.|.+++-.+++....+....|.. -+.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 3344444444444444444444332221 3334444444445555555544444444443322222 2234444
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHH
Q 011652 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 359 (480)
|++.++..+..+.+ .-|+......+.+-|...|.++.|.-++.. ...|..+...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 44444444332221 113444444444444444444444433322 22344444444455555544
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
...-+++ .+..+|..+-.+|...+.+.-| +|....+.....-...++.-|-..|-+++-+.+++..+
T Consensus 1240 VD~aRKA-----ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1240 VDAARKA-----NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHhhhc-----cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 4443332 2344555555555444433222 22222222333445555566666666666666555543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-07 Score=83.12 Aligned_cols=252 Identities=12% Similarity=0.047 Sum_probs=189.3
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
-+.+.|++.+|.-.|+......|.+...|..|......+++-..|+..+.+..+.... +......|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 3567899999999999999888889999999999999999999999999999886433 567777788889999999999
Q ss_pred HHHHHHhhhCCCCc--------cHHHHHHHHHHhhccCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 011652 255 LGIVKSMDSTVCRP--------TSFIYSVLVHTYGVENRIEDAVDTFLEM-EKNGILADVAMYNALIGAFCKANKFKNVY 325 (480)
Q Consensus 255 ~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 325 (480)
++.++.......+- +...-.. ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99998876542110 0000000 1111222233445555554 45555578888888888999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 011652 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-- 403 (480)
Q Consensus 326 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 403 (480)
..|+..+...+. |..+||.|...++...+.++|+..|+++.+..|--+.+...|.-.|...|.+++|.+.|-.++..
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 999999986433 67899999999999999999999999999876667778888999999999999999998776532
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011652 404 -------RFIPSMHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 404 -------~~~p~~~~~~~l~~~~~~~g~~~~A~~ 430 (480)
...++...|..|=.++.-.++.+-+.+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 111234566666666666666554433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-06 Score=86.64 Aligned_cols=232 Identities=14% Similarity=0.141 Sum_probs=139.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCc---cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011652 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTV-CRP---TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNA 310 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (480)
...|...|......++.++|.++.++....- +.- -...|.++++.-..-|.-+...++|+++.+. -.....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 4455555666666666666666666654421 111 1224555555555555666666666666654 112345666
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcC
Q 011652 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQGG 388 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 388 (480)
|...|.+.+.+++|.++++.|.++ +.-....|...+..+.++++-+.|..++.++.+-.|. ......-.++.-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 666777777777777777777665 2235556777777777777777777777777663333 3444555555666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 011652 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG--ETFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~ 466 (480)
+.+.+..+|+.......+ ....|+.++..-.++|+.+.+..+|+++...++.|.. ..|...+..-...|+-+.++.+
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 777777777766654322 4567777777777777777777777777776665543 2355556555556665555444
Q ss_pred HHHH
Q 011652 467 QEKM 470 (480)
Q Consensus 467 ~~~~ 470 (480)
-.+.
T Consensus 1694 KarA 1697 (1710)
T KOG1070|consen 1694 KARA 1697 (1710)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.8e-06 Score=79.84 Aligned_cols=146 Identities=12% Similarity=0.019 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNV 156 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 156 (480)
.|.+-|+.+.+... .+...+....+.|++..+++.|..+.-...+..+ .-..-|....-.|...++..+|+.-|+.
T Consensus 510 RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs 587 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS 587 (1238)
T ss_pred HHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence 57777776655443 4677778888888888888888888555444444 2233344445556677788888888888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHH
Q 011652 157 MQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV 227 (480)
Q Consensus 157 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (480)
..... |.|...|..+..+|.++|++..|.++|.+...-.|.+...-.-..-..+..|.+.+|...+....
T Consensus 588 ALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 588 ALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77665 56778888888888888888888888888776434343333333444556788888888777765
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.2e-05 Score=66.31 Aligned_cols=303 Identities=10% Similarity=0.033 Sum_probs=220.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAF-NGLLS 174 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~ 174 (480)
++.-..-+-..+...|++..|+.-|....+.++.+-.++..-...|...|+..-|+.=+.+.++. +||...- ..-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 34444556677778888999999998888876666666666667788888888888888888774 6664332 22334
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCCh---hh------------HHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDS---KT------------YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (480)
.+.+.|.++.|..-|+.+....+.+. .. ....+..+.-.|+...|+.....+++- .+.|...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence 56788999999998888876433111 11 123344566788999999999998875 345788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHH----HHHH---H
Q 011652 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM----YNAL---I 312 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l---i 312 (480)
.-..+|...|++..|+.=+....+.. ..+..++.-+-..+...|+.+.++...++..+. .||... |..+ .
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 88899999999999988777766554 445566666777888889999999888888775 455332 2111 1
Q ss_pred ------HHHHHcCCHhHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011652 313 ------GAFCKANKFKNVYRVLKDMNSKGVAPNSR---TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 313 ------~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
......++|.++..-.+...+........ .+..+-.++...+++.+|++...++....+.|+.++..-..+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 12344667777877777777764432223 344556677788999999999999998778889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 011652 384 FCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~ 404 (480)
|.-...++.|+.-|+...+.+
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999998865
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-06 Score=84.72 Aligned_cols=247 Identities=10% Similarity=0.063 Sum_probs=192.5
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT-GCNPD---IVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
.+=|+++....|.+...|-..|......++.++|.++.++.+.. ++.-. ...|.++++.-..-|.-+...++|+++
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34455555565667888999999999999999999999998854 11111 345777777777788888999999999
Q ss_pred hhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CCh
Q 011652 262 DSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNS 340 (480)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~ 340 (480)
.+. ...-..|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+..+.+.|..++.+..+.-+. -..
T Consensus 1524 cqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1524 CQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 885 334556889999999999999999999999875 2246778999999999999999999999998875221 134
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM--HTFSVLING 418 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~ 418 (480)
......+..-.+.|+.+.+..+|+......|--...|+.+++.-.++|+.+.+..+|+++...++.|-. ..|.-.+..
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 456667777789999999999999999988888899999999999999999999999999998877543 344545544
Q ss_pred HHhcCChHHHHHHHHHH
Q 011652 419 LCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~ 435 (480)
--..|+-+.+..+=.++
T Consensus 1681 Ek~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHhcCchhhHHHHHHHH
Confidence 44455554444444333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-07 Score=85.47 Aligned_cols=218 Identities=13% Similarity=0.064 Sum_probs=180.0
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 011652 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279 (480)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (480)
-..-..+...+...|-..+|..+++++.. |..++.+|...|+..+|..+..+..+. +|+...|..+.+.
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 33445677788889999999999988753 566788999999999999998888773 8899999999998
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHH
Q 011652 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEA 359 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 359 (480)
.....-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+.- ...+|-..-.+..+.+++..|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHH
Confidence 88888889999988876542 1112222234478999999999988776322 456788888888899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 360 YRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.+.|.......|.+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.+.++..
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999889999999999999999999999999999999887 44777888888889999999999999998874
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-06 Score=73.31 Aligned_cols=204 Identities=7% Similarity=0.015 Sum_probs=88.5
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH--HHHH
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP-NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV--DEAL 255 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~ 255 (480)
.+..++|+.+.+++....+.+..+|+....++...| ++++++..++++.+.+.+ +..+|+.....+.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 344444444444444433334444444444444444 344555555555443322 223333332223333331 3445
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC----HhHHHHHH
Q 011652 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA---NK----FKNVYRVL 328 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~~ 328 (480)
.+++.+.+.. +-+..+|+...-++...|+++++++.++++.+.+.. +..+|+.....+.+. |. .++.....
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 5554554443 334455555555555555555555555555554332 334444433333222 11 12344444
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhC----CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011652 329 KDMNSKGVAPNSRTCNIILNGLIGR----GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 329 ~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
.++....+. +...|+.+...+... +...+|.+.+.+.....+.+......|+..|+.
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 444443222 344455554444442 223345555555444334445555555555553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.5e-06 Score=78.80 Aligned_cols=240 Identities=12% Similarity=0.143 Sum_probs=124.2
Q ss_pred CHHHHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-C--------CCC
Q 011652 96 SVRAYHSMIE--SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-G--------VTQ 164 (480)
Q Consensus 96 ~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~--------~~~ 164 (480)
|..+--++++ .|.--|+.+.|.+-.+.++ +...|..+.+.|.+.++++-|.-.+-.|... | -.+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 3444444443 3445566666666555544 3455666666666666666555544443211 0 011
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011652 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244 (480)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (480)
+ ..-.-..-.....|.+++|+.+|.+.+. |..|=..|...|.+++|.++-+.-.+-.+ ..||......
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~ 867 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKY 867 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHH
Confidence 1 1111111123345666666666666553 33344445556666666665543222111 1344444444
Q ss_pred HHhcCCHHHHHHHHHHhhhC----------C---------CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCH
Q 011652 245 LCKAGRVDEALGIVKSMDST----------V---------CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADV 305 (480)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (480)
+-..++.+.|++.|++.... . ...+...|......+...|+.+.|+.+|.....
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------- 940 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------- 940 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence 44455666666655542111 0 012334455555566666777777777766553
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 367 (480)
|-.+++..|-.|+.++|-++-++-- |......+.+.|-..|++.+|..+|.++.
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3445555556666666666554422 44455566677777777777777776654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-06 Score=78.69 Aligned_cols=319 Identities=14% Similarity=0.149 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...-.+.+..+...|+-++|-++-+. +.. -.+.|..|.+.|.+..|...-..-.. +..|......+..++
T Consensus 589 eklk~sy~q~l~dt~qd~ka~elk~s-------dgd-~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~al 658 (1636)
T KOG3616|consen 589 EKLKRSYLQALMDTGQDEKAAELKES-------DGD-GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAAL 658 (1636)
T ss_pred HHHHHHHHHHHHhcCchhhhhhhccc-------cCc-cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHH
Confidence 34445566677777777766554321 111 12456677777777666554321111 123444444444444
Q ss_pred HccCChhhHHHHHHHhhc-----------------------CCCCChhhH-HHHHHHhhcCCChhHHHHHHHHHHHcCCC
Q 011652 177 CKSKNVRKAQEIFDCMKD-----------------------RFIPDSKTY-SILLEGWGKDPNLPRAREIFREMVDTGCN 232 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~-----------------------~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (480)
.+..-+++|-.+|+++.. .+|..+.+. ......+...|+++.|...|-+..
T Consensus 659 ik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~----- 733 (1636)
T KOG3616|consen 659 IKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN----- 733 (1636)
T ss_pred HhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----
Confidence 444444444444444331 011111110 111222223334444433332221
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011652 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 312 (480)
.....+.+......|.+|+.+++.+... ..-...|..+...|+..|+++.|.++|.+.- .++-.|
T Consensus 734 ----~~~kaieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai 798 (1636)
T KOG3616|consen 734 ----CLIKAIEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAI 798 (1636)
T ss_pred ----hHHHHHHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHH
Confidence 1233455666777888888888888765 3344567778888889999998888886532 245567
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
.+|.+.|+|+.|.++-.+... .......|-.-..-+-.+|++.+|++++-.+- .|+. .|.+|-+.|..+.
T Consensus 799 ~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~~-----aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPDK-----AIQMYDKHGLDDD 868 (1636)
T ss_pred HHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc---CchH-----HHHHHHhhCcchH
Confidence 888899999988888766543 34445556666666777888888887765443 2443 3567777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQ 467 (480)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (480)
..++..+-... .-..|...+..-+-..|+..+|...|-+..+ |.+.++.|...+.|++|.++.
T Consensus 869 mirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 869 MIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 77766543211 1124555666667777777777776654422 444455555555566655554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-05 Score=73.51 Aligned_cols=211 Identities=17% Similarity=0.135 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--------C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--------M-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL 166 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 166 (480)
+-.+|..+...+.+.++.+-|.-.+..|.... . .+.++=..........|.+++|..+|.+.+..
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 55799999999999999999888877765321 1 11122333444556789999999999988763
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHH----------HcCC-----
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMV----------DTGC----- 231 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~----- 231 (480)
..|=..|-..|.+++|.++-+.-.. ..-..||......+-..++++.|++.|++.. ...+
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DR--iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDR--IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccc--eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 3455567788999999988765432 1234567777777777888999998887642 1110
Q ss_pred ----CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 011652 232 ----NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAM 307 (480)
Q Consensus 232 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 307 (480)
..|...|.-.....-..|+.+.|+.+|..... |-.+++..|-.|+.++|-++-++-. |...
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AA 969 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAA 969 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHH
Confidence 11333344444444556788888888876554 4566677777788877776655432 4455
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
...+.+.|-..|++.+|...|.+..
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5566777777777777777776654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.2e-06 Score=67.68 Aligned_cols=236 Identities=14% Similarity=0.148 Sum_probs=108.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhH
Q 011652 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPR 218 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (480)
+-+.-.|++..++..-+..... +.++..-..+.++|...|.+... ..+++.+..|.......+.......++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---ccccccccCChHHHHHHHHHHhhCcchhHH
Confidence 3344455565555554443332 12333333344555555554322 222333223333333333333333333333
Q ss_pred HHH-HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011652 219 ARE-IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 219 a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
-+. +.+.+......-+......-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22333332222222222233345666666666666665421 11112222333445555666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 011652 298 KNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD 373 (480)
Q Consensus 298 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 373 (480)
+. .+..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++.+......+
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 53 244455555554443 23455666666666553 34555555666666666666666666666665544555
Q ss_pred HHHHHHHHHHHHhcCC
Q 011652 374 ADTYTMMIKMFCQGGE 389 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~ 389 (480)
+.+...++-+-...|.
T Consensus 241 petL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 241 PETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 5555444444444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00012 Score=67.55 Aligned_cols=353 Identities=11% Similarity=0.086 Sum_probs=202.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccCChh
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA--AFNGLLSALCKSKNVR 183 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~ 183 (480)
..-+.+..++|...++... ..+..+...-...+.+.|++++|.++|+.+.+.+. ++.. .-..++.+-. .-
T Consensus 88 c~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a----~l 159 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAA----AL 159 (652)
T ss_pred HHHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH----hh
Confidence 3457899999999998332 24566777788889999999999999999988763 3322 1122221111 11
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcC-------------CCCChh-hHHHHHHHHHhcC
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-------------CNPDIV-TYGIMVDVLCKAG 249 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~-~~~~l~~~~~~~g 249 (480)
.+. +.+........+-..+....-.++..|++.+|+++++...+.+ +.-+.. .-..+...+-..|
T Consensus 160 ~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 160 QVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 111 2333333211122333334456677899999999998883211 000111 1123455667789
Q ss_pred CHHHHHHHHHHhhhCCCCccHHH----HHHHHHHhhccCCHH-HHHHHHHH------------H----------------
Q 011652 250 RVDEALGIVKSMDSTVCRPTSFI----YSVLVHTYGVENRIE-DAVDTFLE------------M---------------- 296 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~-~a~~~~~~------------~---------------- 296 (480)
+.++|..++..+.+.. ++|... -|.++..-....-++ .++..++. +
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888765 333211 122221111110000 00000000 0
Q ss_pred -------------HHC-CCCCCHHHHHHHHHHHHH--cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHH
Q 011652 297 -------------EKN-GILADVAMYNALIGAFCK--ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY 360 (480)
Q Consensus 297 -------------~~~-~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 360 (480)
... +..| ...+..++....+ ...+..+..++...-+....-...+....++.....|+++.|.
T Consensus 318 l~tnk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred HHhhhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 000 1111 2333334433222 2246667777766666533333455666777788899999999
Q ss_pred HHHHHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCH----HHHHHHHHHHHhcCChHH
Q 011652 361 RVFRRMIK-------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK--RFIPSM----HTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 361 ~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~ 427 (480)
+++..... .....+.+...+...+.+.++.+.|..++.+...- .-.+.. .++..+...-.+.|+.++
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 98883221 23345556677778888888888788887776531 011122 233334444456799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 428 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
|..+++++.+.. ++|..+...++.+|++.. .+.|..+-+++.
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~L~ 518 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhcCC
Confidence 999999999854 578888888998888754 677776665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.9e-05 Score=72.84 Aligned_cols=267 Identities=13% Similarity=0.078 Sum_probs=187.4
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011652 165 NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDV 244 (480)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (480)
.+.+|..+..+-.+.|.+.+|.+-|-+.. |+..|..+++...+.|.+++-.+++....+..-+|... ..++-+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad-----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD-----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC-----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 45678888888888888888887776554 77888899999999999999988888777766566544 467778
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011652 245 LCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
|++.++..+.++++. -||......+.+-|...|.++.|.-+|... .-|..+...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 888888877666553 577777778888888888888887776544 3477777788888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
...-++.- +..||..+-.+|...+.+.-|. |.. .......-...++..|-..|-+++...+++.....
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 76655432 5678888888888777665542 222 33445566778888899999999988888876532
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
. ......|+.+.-.|.+- ++++..+.++-.-.+ .-.-.+++++....-|.+..-++.+-.+.
T Consensus 1309 E-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1309 E-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred h-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1 12345677777777664 355555555544322 11335677887777777777666655443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-06 Score=75.28 Aligned_cols=187 Identities=12% Similarity=0.017 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH---
Q 011652 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV---ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA--- 167 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 167 (480)
+.....+..+...+.+.|+++.|...|+++....+.++ .++..+...+...|++++|+..++.+.+.. +.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 35677778888888899999999999999887766333 567788888889999999999999988754 22222
Q ss_pred HHHHHHHHHHcc--------CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHH
Q 011652 168 AFNGLLSALCKS--------KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239 (480)
Q Consensus 168 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (480)
++..+..++... |+.+.|.+.|+.+....+.+...+..+..... . ..... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~------~~~~~--------~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----L------RNRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----H------HHHHH--------HHHH
Confidence 344444455443 66778888888877654444444332221110 0 00000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCC--CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011652 240 IMVDVLCKAGRVDEALGIVKSMDSTVC--RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
.+...+.+.|++.+|...++....... +.....+..+..++...|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678888999999999998876531 223567788889999999999999988887764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.9e-06 Score=81.97 Aligned_cols=238 Identities=10% Similarity=0.069 Sum_probs=160.8
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
.+...+..|+..+...+++++|.++.+...+.. +.....|-.+...+...++...+..+ .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 677888999999999999999999998777653 33333444444466666665554433 3344
Q ss_pred HhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHH
Q 011652 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED 288 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 288 (480)
......++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 4444555544555555555532 244577788889999999999999999998887 67788889999888888 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
|..++.+.... |...+++..+..+|.++....+. +...+..+ .+.+..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i----------------~~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI----------------ERKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHH----------------HHHHHh
Confidence 98888887653 56666888888888888875222 22222222 222222
Q ss_pred --cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 369 --LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 369 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
+..--..++..+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 12233445666667777788888888888888877644 5566666676665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.5e-06 Score=68.38 Aligned_cols=159 Identities=13% Similarity=0.014 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 011652 101 HSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK 180 (480)
Q Consensus 101 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 180 (480)
..+-..+.-.|+-+....+........+.+.......+....+.|++..|+..+.+..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4445555556666666666665554444555566666666677777777777777666544 666677777777777777
Q ss_pred ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011652 181 NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260 (480)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (480)
+++.|..-|.+..+-.+.++...+.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.++...
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777776666655556666666666666667777777766666654322 445555555566666676666666544
Q ss_pred h
Q 011652 261 M 261 (480)
Q Consensus 261 ~ 261 (480)
-
T Consensus 228 e 228 (257)
T COG5010 228 E 228 (257)
T ss_pred c
Confidence 3
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.6e-06 Score=68.49 Aligned_cols=153 Identities=12% Similarity=0.176 Sum_probs=109.6
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCh
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 356 (480)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.+.. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 4567788888776544422221 11 0122356667777777777766433 677888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 357 DEAYRVFRRMIKLCEADADTYTMMIKMF-CQGGE--LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
++|...+++..+..+.+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888887777888888888764 56676 48888888888887644 67788888888888888888888888
Q ss_pred HHHHcCCCCCH
Q 011652 434 DMIEKGIRPSG 444 (480)
Q Consensus 434 ~~~~~~~~p~~ 444 (480)
++.+.. .|+.
T Consensus 169 ~aL~l~-~~~~ 178 (198)
T PRK10370 169 KVLDLN-SPRV 178 (198)
T ss_pred HHHhhC-CCCc
Confidence 888753 3444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.6e-06 Score=68.34 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=106.7
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..+-..+...|+-+....+....... .+.+.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44556666667666666666654332 22355555566677777777777777777776642 34677777777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
|+++.|..-|.+..+..+-++..++.+...|.-.|+.+.|..++......+.. |...-..+.......|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777777777766666677777777777777777777777777665432 55666666667777777777777655
Q ss_pred HH
Q 011652 434 DM 435 (480)
Q Consensus 434 ~~ 435 (480)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.5e-05 Score=71.98 Aligned_cols=167 Identities=18% Similarity=0.272 Sum_probs=84.9
Q ss_pred HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011652 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+.+......+.+|+.+++.+... ..-...|..+.+.|...|+++.|.++|-+.- .++-.|.+|.+.|+|+
T Consensus 739 ieaai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 34444556666666666666542 1123345566666666667666666664322 2344556666667776
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
.|.++-++... .......|.+-..-+-+.|++.+|.++|-.+.. |+ ..|.+|-+.|..+...++..+-.
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 66666555432 233344444444555556666666655543322 22 23455555665555555554432
Q ss_pred hCCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 333 SKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 333 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
... -..|-..+..-+...|++..|+..|
T Consensus 878 ~d~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 878 GDH---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hhh---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 211 1123333444444445555554444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.7e-06 Score=80.79 Aligned_cols=240 Identities=7% Similarity=0.068 Sum_probs=156.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.+...|..|+..+...+++++|.++.+......+.....|..+...+.+.++.+++..+ . ++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 46789999999999999999999999988888776666666666677788876666555 2 233
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
......++.-...+...+.. ...+...+..+..+|-+.|+.++|..+++++++... -|..+.|.+...|... ++++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHH
Confidence 33333334333333333333 233555778888888888999999999998888763 3778888888888888 88888
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
.+++.+.... +...+++..+.+++.++...... +...+-.+.+.....-
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~--------------- 217 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR--------------- 217 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh---------------
Confidence 8888776643 45556777777777777765321 2222222222211110
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011652 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 335 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
|..--..++-.+-..|-..++++++..+++.+.+..+.|......++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 111123344445555666666777777777777655556666666666665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.1e-05 Score=74.03 Aligned_cols=180 Identities=14% Similarity=0.057 Sum_probs=132.9
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|+..|-...+... .=...|..+...|....+...|...|+...+.+..+..........|++..+++.|..+.-..-
T Consensus 476 ~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 476 LALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 45555544433322 2346788888888888899999999999999888888999999999999999999999843322
Q ss_pred hcC-CCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhh
Q 011652 159 KYG-VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 159 ~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (480)
+.. ...-...|....-.|...++...|..-|+...+..|.|...|..++.+|...|.+..|.++|.+.... .|+ .+
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SK 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hH
Confidence 211 00111223334445677889999999999998887889999999999999999999999999988764 333 23
Q ss_pred HHHH--HHHHHhcCCHHHHHHHHHHhhh
Q 011652 238 YGIM--VDVLCKAGRVDEALGIVKSMDS 263 (480)
Q Consensus 238 ~~~l--~~~~~~~g~~~~a~~~~~~~~~ 263 (480)
|... .-.-+..|.+.+++..++.+..
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3322 2345667899998888887754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-06 Score=73.24 Aligned_cols=185 Identities=14% Similarity=0.023 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChh---h
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL---AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK---T 202 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 202 (480)
.....+..+...+...|++++|...|+++.+.. +.+. .++..+..++...|++++|...++.+.+..+.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 567788888899999999999999999988753 2232 46677888999999999999999999875554443 4
Q ss_pred HHHHHHHhhcC--------CChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHH
Q 011652 203 YSILLEGWGKD--------PNLPRAREIFREMVDTGCNPDIV-TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273 (480)
Q Consensus 203 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (480)
+..+..++.+. |++++|.+.++++.+.. |+.. .+..+..... .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHHH
Confidence 55556666554 67888999999888653 3322 2222111100 0000 0 0112
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGI--LADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
..+...+.+.|++++|...+....+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2466778999999999999999887532 123568889999999999999999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00044 Score=67.07 Aligned_cols=213 Identities=10% Similarity=0.039 Sum_probs=113.2
Q ss_pred hHHHHHhhCCCCCCHHHHHHHHHHHhhCcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011652 49 VLDTALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128 (480)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 128 (480)
.+...|++.+..+...++..+...-...+++|..+++.....++ .|..+...+-..|.+.++.++|..+|++.....|
T Consensus 31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence 44455555555555554444443333444466666666544433 3666777777777777777777777777766554
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC----------hhhHHHHHHHhhcCC-C
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN----------VRKAQEIFDCMKDRF-I 197 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~-~ 197 (480)
. .+-...+..+|++.+++.+-.+.--++-+ ..+-....+-++++.+..... ..-|.+.++.+.+.. +
T Consensus 109 ~-eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 109 S-EELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 3 66666666677776665554444333333 234445555555555443211 223444444444411 1
Q ss_pred -CChhhHHHHHHHhhcCCChhHHHHHHH-HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011652 198 -PDSKTYSILLEGWGKDPNLPRAREIFR-EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265 (480)
Q Consensus 198 -~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (480)
.+..-.......+...|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...+
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 111112222233344566777777773 33333223333444455666677777777777777776665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-08 Score=54.80 Aligned_cols=32 Identities=31% Similarity=0.677 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011652 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (480)
|+.||..+|+.+|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-05 Score=78.74 Aligned_cols=146 Identities=10% Similarity=0.087 Sum_probs=118.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHH
Q 011652 301 ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379 (480)
Q Consensus 301 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (480)
...+...+..|.....+.|..++|..+++...+. .|+ ......+...+.+.+++++|+...++.....+.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3446888888888889999999999999999886 444 4566777888889999999999999999888888899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 450 (480)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.- .|...-|+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 9999999999999999999998744 2257888888999999999999999999988642 3334444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-05 Score=65.32 Aligned_cols=248 Identities=10% Similarity=0.046 Sum_probs=161.6
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
-+.-.|.+..++..-...... +.+...-..+-++|...|.+.....- ... |-.|.......+......-++.+.-
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHH
Confidence 344457777666655554432 13444455566677777765543332 221 1133444444444444444444443
Q ss_pred HH-HHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 255 LG-IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 255 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
.. +.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|...+++|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33 44444444334444444555667889999999999887722 233333334556778889999999999987
Q ss_pred CCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011652 334 KGVAPNSRTCNIILNGLIG----RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 334 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 409 (480)
- -+..|.+.|..++.+ .+...+|.-+|+++.+..+|++.+.+....++...|++++|..++++...+... ++
T Consensus 166 i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 166 I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 5 356677777777754 456889999999999889999999999999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHhcCChHH-HHHHHHHHHH
Q 011652 410 HTFSVLINGLCDKGIVSD-SCVLLEDMIE 437 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 437 (480)
.+...++-.-...|...+ ..+.+.++..
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 777777766666666544 4456666654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-08 Score=54.38 Aligned_cols=32 Identities=56% Similarity=1.111 Sum_probs=18.4
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 230 GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
|+.||..||+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-06 Score=66.24 Aligned_cols=106 Identities=8% Similarity=-0.083 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
+..+...+...|++++|...|+......+.+..+|..+...+...|++++|+..|+...+.+ +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 44556666777777777777777777777777777777777777777777777777777654 45666677777777777
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSIL 206 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l 206 (480)
|++++|...|+......+.+...|...
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 777777777777766544455555433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00037 Score=63.75 Aligned_cols=374 Identities=9% Similarity=0.084 Sum_probs=231.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
-|..+|+.||+-+... .++++.+.++++...-+.++..|..-|..-.+.++++....+|.+....- .+...|...++
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 5999999999987666 99999999999998888889999999999999999999999999887753 45667777775
Q ss_pred HHHc-cCChhh----HHHHHHHhhc--CC-CCChhhHHHHHHHh---------hcCCChhHHHHHHHHHHHcCCCC----
Q 011652 175 ALCK-SKNVRK----AQEIFDCMKD--RF-IPDSKTYSILLEGW---------GKDPNLPRAREIFREMVDTGCNP---- 233 (480)
Q Consensus 175 ~~~~-~~~~~~----a~~~~~~~~~--~~-~~~~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~~~~---- 233 (480)
--.+ .|+... ..+.|+-... +. ..+...|+..+..+ ..+.+++...++|+++...-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4333 233333 2333444333 22 22334466555543 33446677888888887531110
Q ss_pred --ChhhHHHHHHHH-------HhcCCHHHHHHHHHHhhh--CCCCccHH---------------HHHHHHHHhhcc----
Q 011652 234 --DIVTYGIMVDVL-------CKAGRVDEALGIVKSMDS--TVCRPTSF---------------IYSVLVHTYGVE---- 283 (480)
Q Consensus 234 --~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~~~~~~---- 283 (480)
|-..|..-|+.. -+...+..|.++++++.. .|...+.. .|..+|.-=-..
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 112222222211 123356677777777643 22111111 133333221111
Q ss_pred --CCH--HHHHHHHHH-HHHCCCCCCHHHHH-H----HHHHHHHcCC-------HhHHHHHHHHHHhCCCCCChhhHHHH
Q 011652 284 --NRI--EDAVDTFLE-MEKNGILADVAMYN-A----LIGAFCKANK-------FKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 284 --g~~--~~a~~~~~~-~~~~~~~~~~~~~~-~----li~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
|.. ....-.+++ +.-.+..|+..... . .-+.+...|+ .+++..+++...+.-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 122223333 22333444432211 1 1122333343 56788888877664333355555555
Q ss_pred HHHHHhC---CChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 011652 347 LNGLIGR---GETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSVLINGLCD 421 (480)
Q Consensus 347 ~~~~~~~---~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 421 (480)
...--.. +..+.....++++.. ....-..+|..+++...+...+..|..+|.++.+.+..+ .+..+.+++.-+|.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 5432222 236667777777776 223334578888999999999999999999999887666 67788888887775
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 422 KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
++..-|.++|+--+.. ...++..-...++.+...++-+.++.+|++....
T Consensus 415 -kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 415 -KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred -CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7789999999987754 3344555567788888888888888888887654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.1e-06 Score=71.02 Aligned_cols=119 Identities=11% Similarity=0.151 Sum_probs=62.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCC--hhhHH
Q 011652 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL-CKSKN--VRKAQ 186 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~ 186 (480)
.++.+++...++...+.++.+...|..+...|...|++++|...|+...+.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3344455555555555555555555555555555555555555555555543 33444444444432 34444 35555
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 187 EIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
+++++..+..+.+..++..+...+.+.|++++|...|+++.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555544445555555555555555555555555555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.5e-05 Score=67.36 Aligned_cols=149 Identities=14% Similarity=0.170 Sum_probs=112.0
Q ss_pred HHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCh
Q 011652 278 HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGET 356 (480)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~ 356 (480)
..+...|++++|+..++.+.+. .+.|+.........+.+.++..+|.+.++.+... .|+ ....-.+..++.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 3445678888888888888765 2335556666667888889999999999888876 444 45566677888888999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
.+|..+++......+.|+..|..|.++|...|+..++.....+ ++...|++++|...+....
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 9999998888888888888999999999988888777655443 3566788888888888887
Q ss_pred HcCCCCCHHHHH
Q 011652 437 EKGIRPSGETFG 448 (480)
Q Consensus 437 ~~~~~p~~~~~~ 448 (480)
+. ++++..+|.
T Consensus 453 ~~-~~~~~~~~a 463 (484)
T COG4783 453 QQ-VKLGFPDWA 463 (484)
T ss_pred Hh-ccCCcHHHH
Confidence 64 344444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7e-06 Score=64.18 Aligned_cols=95 Identities=8% Similarity=-0.104 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+......+...|++++|...|+.+....+.+...|..+..++...|++++|...|+.....+. .+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 334555566667777777777776666666667777777777777777777777777766542 2566666677777777
Q ss_pred CChHHHHHHHHHHHHc
Q 011652 423 GIVSDSCVLLEDMIEK 438 (480)
Q Consensus 423 g~~~~A~~~~~~~~~~ 438 (480)
|+.++|...|+..++.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.3e-06 Score=79.75 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=128.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011652 93 YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL 172 (480)
Q Consensus 93 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 172 (480)
+..++..+-.|..+..+.|++++|..+++...+..|.+...+..++..+.+.+++++|...+++..... +.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 446899999999999999999999999999999999999999999999999999999999999999876 5677788888
Q ss_pred HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHH
Q 011652 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI 240 (480)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (480)
..++...|++++|..+|+++....+.+..++..+...+...|+.++|...|++..+.. .+....|+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 8999999999999999999998666678999999999999999999999999998642 233444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.2e-06 Score=64.10 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (480)
...+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...+++.....+.+...+..+...+...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3333344444444444444444443332 223334444444444444444444444444333333344444444444444
Q ss_pred CChhHHHHHHHHHHH
Q 011652 214 PNLPRAREIFREMVD 228 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~ 228 (480)
|++++|.+.|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.9e-05 Score=67.25 Aligned_cols=181 Identities=11% Similarity=0.126 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHhhhCC--CCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 011652 250 RVDEALGIVKSMDSTV--CRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRV 327 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 327 (480)
++.++....+.+...+ -.|+...+...+........-..+..++.+..+. .-...-|..-+ .+...|..++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 3444444444443322 2344455555555443333333333333333321 11233344433 45678999999999
Q ss_pred HHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011652 328 LKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406 (480)
Q Consensus 328 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 406 (480)
+..+... .| |..........+...|+.++|.+.++.+....|......-.+.++|.+.|++.+|..+++.......
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p- 405 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP- 405 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-
Confidence 9998876 44 5555666778889999999999999999987777788888999999999999999999999887653
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 407 PSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
-|+..|..|..+|...|+..++.....+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 488999999999999999888877666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00019 Score=59.08 Aligned_cols=128 Identities=12% Similarity=0.101 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
|..++-+....|+.+.|...++.+..+-+.+..+-..-.-.+-..|++++|+++|+.+.+.+ |.|..++.--+.+.-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 34444444555666666666666555544333333222233334555666666666655544 44445554444444455
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
|+.-+|++-+....+.+..|...|.-+...|...|++++|.-.++++.-
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 5555555555555555555556666666666666666666555555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-05 Score=61.93 Aligned_cols=111 Identities=10% Similarity=0.057 Sum_probs=92.0
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 011652 83 FFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV 162 (480)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 162 (480)
.|+.+...++ .+......+...+...|++++|.+.|+.+...++.+...+..+...+...|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDS--EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCCh--hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3444444433 3556677778888899999999999999988888888999999999999999999999999988875
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCC
Q 011652 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF 196 (480)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 196 (480)
+.+...+..+..++...|++++|...|+...+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6677888888889999999999999999888753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00025 Score=58.42 Aligned_cols=162 Identities=11% Similarity=0.008 Sum_probs=80.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCC
Q 011652 135 CIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214 (480)
Q Consensus 135 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (480)
..++-+....|+.+.|..+++.+...- |-+..+-..-...+-..|.+++|.++++.+.+..|.|..++..-+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence 333444445555666666666555432 2232222222223344556666666666665555555555555444444555
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC---CHHHHHH
Q 011652 215 NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN---RIEDAVD 291 (480)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~ 291 (480)
+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.. |.+...+..+.+.+.-.| +.+.+.+
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555555543 33355566666666666666666666665555432 333333344443332222 3444555
Q ss_pred HHHHHHHC
Q 011652 292 TFLEMEKN 299 (480)
Q Consensus 292 ~~~~~~~~ 299 (480)
+|.+..+.
T Consensus 213 yy~~alkl 220 (289)
T KOG3060|consen 213 YYERALKL 220 (289)
T ss_pred HHHHHHHh
Confidence 55555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.7e-05 Score=68.70 Aligned_cols=124 Identities=14% Similarity=0.261 Sum_probs=76.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+....... +...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 344555556666777777777766652 33 2334555565666666677766666654222 444444455556666
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
++.+.|+.+.+++.+..|.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777777776666666666777777777777777777766665543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00014 Score=57.07 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=67.9
Q ss_pred CCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHH
Q 011652 353 RGETDEAYRVFRRMIKLCEAD---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM--HTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 427 (480)
.++...+...++.+.+..+.+ ....-.+...+...|++++|...|+.+......|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 566666666666666644444 233334556666677777777777777665422221 233445566667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011652 428 SCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469 (480)
Q Consensus 428 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (480)
|+..++...... ..+..+......+.+.|++++|...|++
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777775533222 2334455566777777777777777665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.3e-05 Score=68.87 Aligned_cols=124 Identities=17% Similarity=0.210 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
...++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++++..+.. +.+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3456677777899999999999999874 44 34557888888888999999999988653 3366667767777889
Q ss_pred cCCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 318 ANKFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
.++++.|..+.+++.+. .| +..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999986 44 456999999999999999999999887653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00011 Score=57.60 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH--HHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL--AAFNGLL 173 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll 173 (480)
.|..++..+ ..++...+...++.+....+.+ ....-.+...+...|++++|...|+........+.. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444444444 3666777777777776665533 222333445666677777777777777665422221 2333455
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHH
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (480)
.++...|++++|+..++.... .......+......+.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666667777777777755432 223444555666666667777777666654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.011 Score=58.00 Aligned_cols=168 Identities=9% Similarity=-0.010 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHhhCcH---HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHH
Q 011652 60 RVSPEIVEDVLEKFRNAGT---LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI 136 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 136 (480)
.++.+....++..+.++-. +|..+++++.+.. |+......+..+|.|.+.+.+-.+.--++-+.-+.++..|=+
T Consensus 73 ~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 73 KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 3344444444444433222 5666666665543 345555555556666666544433333333333333444444
Q ss_pred HHHHHHHhC-C---------HHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHh-hc-CCCCChhhH
Q 011652 137 IMRKYARVQ-K---------VEEAVYTFNVMQKYGVTQ-NLAAFNGLLSALCKSKNVRKAQEIFDCM-KD-RFIPDSKTY 203 (480)
Q Consensus 137 li~~~~~~~-~---------~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~ 203 (480)
+++...... . ..-|.+..+.+.+.+-+. +..-.......+...|.+++|..++..- .+ ....+...-
T Consensus 150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~ 229 (932)
T KOG2053|consen 150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLE 229 (932)
T ss_pred HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHH
Confidence 444443321 1 123444444444432111 1111222233344556666666666322 22 222233333
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcC
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (480)
+.-+..+...+++.+..++-.++...|
T Consensus 230 ~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 230 NKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 455556666667777666666666654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.1e-06 Score=46.90 Aligned_cols=33 Identities=39% Similarity=0.753 Sum_probs=20.9
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCC
Q 011652 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPD 234 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (480)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.1e-06 Score=46.30 Aligned_cols=33 Identities=42% Similarity=0.924 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 443 (480)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00018 Score=54.34 Aligned_cols=102 Identities=18% Similarity=0.080 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRML---NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVT--QNLAAFNGLL 173 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll 173 (480)
++......+.+.|++++|.+.|+.+....+. ....+..+...+.+.|+++.|.+.|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444455555556666666666655544331 1334445555555555566666555555543211 1123344444
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCCh
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRFIPDS 200 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 200 (480)
.++...|+.++|...++++....+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 555555555555555555555433333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.7e-05 Score=67.82 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=64.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 415 (480)
+...+..+++.+....+.+.+..++-+... ....-+.|..++++.|...|..+++..+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444555555555555555555555555544 11112223345666666666666666666655556666666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
+..+.+.|++..|.++..+|...+...++.|+.-.+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666665544444444554444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0001 Score=64.91 Aligned_cols=130 Identities=11% Similarity=0.107 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR-VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
.+|..++....+.+..+.|..+|.+..+.+..+..+|......-.. .++.+.|..+|+...+. ++.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 3566677777777777777777777765544555666655555344 45555577777776654 355666677777777
Q ss_pred HccCChhhHHHHHHHhhcCCCCCh---hhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDS---KTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
.+.++.+.|..+|++.....+++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777766433332 3566666666666666666666666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.1e-06 Score=45.47 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=19.6
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCC
Q 011652 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233 (480)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (480)
.+|+.++.++++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-05 Score=44.88 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 442 (480)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00014 Score=52.22 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
|..+...+...|++++|...++......+.+...+..+...+...+++++|.+.++...+.. +.+..++..+..++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444555555666666666666555544444555555555555666666666665555543 23334455555555555
Q ss_pred CChhhHHHHHHHhh
Q 011652 180 KNVRKAQEIFDCMK 193 (480)
Q Consensus 180 ~~~~~a~~~~~~~~ 193 (480)
|+++.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555555543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00017 Score=65.96 Aligned_cols=122 Identities=9% Similarity=0.070 Sum_probs=76.7
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC---CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhh
Q 011652 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (480)
+.+.+......+++.+....+++.+..++.+.... ..--..|..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33555556666666666666666676666666541 112234445677777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhc
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV 282 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (480)
++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 777777777777777777777666665555555555555544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00059 Score=60.34 Aligned_cols=125 Identities=14% Similarity=0.097 Sum_probs=63.7
Q ss_pred HHHhC-CChHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHH
Q 011652 349 GLIGR-GETDEAYRVFRRMIKL--CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-----PSMH-TFSVL 415 (480)
Q Consensus 349 ~~~~~-~~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~-~~~~l 415 (480)
.|... |+++.|.+.|+++.+. .... ..++..+...+.+.|++++|.++|+++...-.. .+.. .|...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 6677777777766651 1111 234556667777777788887777776653211 1121 22333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhh
Q 011652 416 INGLCDKGIVSDSCVLLEDMIEK--GIRPS--GETFGKLRKLLIK--EGREDVLKFLQEKMNLL 473 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~l 473 (480)
+-++...|+...|.+.+++.... ++..+ ......|+.++.. ...++.+..-++.+.+|
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 34555667777777777777643 23223 3345556666644 22355555555444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00021 Score=62.88 Aligned_cols=142 Identities=9% Similarity=0.085 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG-LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
.+|-.++...-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|.++|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4677788888888889999999999885432 234444444444 33356777799999998888888888888888999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011652 385 CQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
...++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+. .|+...+..++
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 9999999999999988765 2222 247888888888888888888888888764 34433333343
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00022 Score=51.14 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=39.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
+...+...|++++|...++.+.+... .+...+..+...+...|++++|.+.+++..... +.+...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 33444444455555555444443321 122334444444444455555555554444432 1122344444444445555
Q ss_pred HHHHHHHHHHHHh
Q 011652 460 EDVLKFLQEKMNL 472 (480)
Q Consensus 460 ~~~a~~~~~~~~~ 472 (480)
++.|...+++..+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555444433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00044 Score=63.21 Aligned_cols=88 Identities=10% Similarity=-0.041 Sum_probs=51.9
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
.+...|+++.|+..|+++.+..+.+...|..+..+|...|++++|...++++..... .+...|..+..+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHH
Confidence 344556666666666666655555556666666666666666666666666655432 1445555556666666666666
Q ss_pred HHHHHHHHH
Q 011652 429 CVLLEDMIE 437 (480)
Q Consensus 429 ~~~~~~~~~ 437 (480)
...|+++++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 666666655
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00059 Score=51.45 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEAD---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI--PSMHTFSVLIN 417 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~ 417 (480)
+..+...+...|++++|.+.+..+....+.+ ...+..+..++.+.|++++|.+.++.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344444555555566655555555422221 334445555666666666666666655543211 11334555555
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 011652 418 GLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~ 438 (480)
++.+.|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00034 Score=49.94 Aligned_cols=79 Identities=13% Similarity=0.325 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHH
Q 011652 378 TMMIKMFCQGGELEKAFKVWKYMKLKRF-IPSMHTFSVLINGLCDKG--------IVSDSCVLLEDMIEKGIRPSGETFG 448 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~ 448 (480)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666999999999999999999 899999999999887653 3456788999999999999999999
Q ss_pred HHHHHHHh
Q 011652 449 KLRKLLIK 456 (480)
Q Consensus 449 ~l~~~~~~ 456 (480)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988876
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00095 Score=51.56 Aligned_cols=94 Identities=10% Similarity=-0.064 Sum_probs=67.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011652 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (480)
-.+...+...|++++|.++|+.+....+.+..-|..|.-++-..|++++|...|......++. |+..+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 334444566777777777777777766677777777777777777777777777777766643 6677777777777777
Q ss_pred ChHHHHHHHHHHHHc
Q 011652 424 IVSDSCVLLEDMIEK 438 (480)
Q Consensus 424 ~~~~A~~~~~~~~~~ 438 (480)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777777776643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00025 Score=60.14 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=69.6
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
-..+.+++.+|+..|.+.++.... |.+.|..-..+|.+.|..+.|++-.+..+...+....+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 355667777888888777776333 5666777777777788887777777777766666667777777788878888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 011652 394 FKVWKYMKLKRFIPSMHTFSV 414 (480)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~ 414 (480)
.+.|++..+.. |+..+|-.
T Consensus 169 ~~aykKaLeld--P~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALELD--PDNESYKS 187 (304)
T ss_pred HHHHHhhhccC--CCcHHHHH
Confidence 87777777644 55555543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.018 Score=51.38 Aligned_cols=277 Identities=11% Similarity=0.017 Sum_probs=146.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhh
Q 011652 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184 (480)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 184 (480)
..+-+..++..|+..+.......+.+...|..-...+...|++++|.--.+.-.+.. +-......-.-.++...++..+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 344555566666666666665555445555555555555555555554443333321 1111223333333333444444
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcC-CCCChhhHHHH-HHHHHhcCCHHHHHHHHHHhh
Q 011652 185 AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTG-CNPDIVTYGIM-VDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~ 262 (480)
|.+.++.-. .+ ....++..++...... -+|...++..+ ..++...|++++|...-..+.
T Consensus 136 A~~~~~~~~--------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 136 AEEKLKSKQ--------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHHhhhhh--------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 444443110 00 1111222222222111 11333333332 245556777777777766666
Q ss_pred hCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHH-------------HHHHHHHHHcCCHhHHHHHHH
Q 011652 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMY-------------NALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~li~~~~~~~~~~~a~~~~~ 329 (480)
+.+ ..+......-..++.-.++.+.+...|++....+ |+...- ..=..-..+.|.+..|.+.+.
T Consensus 197 kld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 197 KLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred hcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 543 2222222222233445567777777777766543 332211 111223467788899999998
Q ss_pred HHHhCC---CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 330 DMNSKG---VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 330 ~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
+.+... ..|+...|.....+..+.|+.++|+.--+...+..+.-...|..-..++...+++++|.+-++...+..
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 887652 344555666666777888999999888888776333334455555666777888888888888877653
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00038 Score=49.75 Aligned_cols=76 Identities=26% Similarity=0.468 Sum_probs=45.1
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGI-LADVAMYNALIGAFCKAN--------KFKNVYRVLKDMNSKGVAPNSRTCNIIL 347 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 347 (480)
|..+...+++.....+|+.+...|+ .|+..+|+.++.+.++.. ++-..+.++++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444666666666666666666 566666666666555432 2334556666676666777777777766
Q ss_pred HHHHh
Q 011652 348 NGLIG 352 (480)
Q Consensus 348 ~~~~~ 352 (480)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.022 Score=51.41 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIK-L-CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTF-SVLIN 417 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 417 (480)
..|...+++..+...++.|..+|-++.+ + ..+++.++++++..++. |+..-|.++|+.-..+- ||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 4566677777777888888888888887 3 66777888888887764 67778888887654432 454444 44566
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 418 GLCDKGIVSDSCVLLEDMIEKGIRPS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+..-++-..|..+|+....+ +..+ ...|..++..-..-|+...+..+-+++..+-+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 667778888888888866543 2222 56788888888888888888887777766543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0085 Score=51.42 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=24.4
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhH---HHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTY---SILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
...|++++|.+.|+.+....|-+.... -.++.++.+.+++++|...+++..+.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555555544333222222 23344445555555555555555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00066 Score=62.08 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=62.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhh
Q 011652 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184 (480)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 184 (480)
..+...|+++.|++.|++..+.++.+...|..+..++...|++++|+..++.+.+.. +.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 444566677777777777776666666666666777777777777777777766654 3455566666666667777777
Q ss_pred HHHHHHHhhcCCCCChh
Q 011652 185 AQEIFDCMKDRFIPDSK 201 (480)
Q Consensus 185 a~~~~~~~~~~~~~~~~ 201 (480)
|...|++.....+.+..
T Consensus 89 A~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 89 AKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHhCCCCHH
Confidence 77777666654333333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0012 Score=51.02 Aligned_cols=97 Identities=9% Similarity=0.065 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
....-.+...+...|++++|..+|+.+...++-+...|..|.-.+-..|++++|+..|......+ +.++..+..+..++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 33444555666778888888888888888888778888888888888888888888888887776 56777777788888
Q ss_pred HccCChhhHHHHHHHhhc
Q 011652 177 CKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~ 194 (480)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888887665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.04 Score=52.65 Aligned_cols=123 Identities=9% Similarity=-0.068 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCHHHHHHHH-------HHHHHhCCHHHHHHHHHHHHhcCCCCCH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-RMLNVETFCIIM-------RKYARVQKVEEAVYTFNVMQKYGVTQNL 166 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 166 (480)
|.+..|..+.......-.++.|+..|-+...- |+.-..-+..+. ..-+--|.+++|.++|-.+-.++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-----
Confidence 78899999998888888888888888765432 111111111111 11223488999999987776543
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhcC--CCCChhhHHHHHHHhhcCCChhHHHHHHHHH
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
..+..+.+.|++-...+++..-..+ ...-...|+.+...+.....|++|.+.|..-
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2456677778887776666543321 1122356777777777777777777776543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.7e-05 Score=52.84 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=9.0
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~ 434 (480)
+..+|.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.3e-05 Score=41.56 Aligned_cols=29 Identities=38% Similarity=0.631 Sum_probs=15.8
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHcC
Q 011652 202 TYSILLEGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (480)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0026 Score=51.66 Aligned_cols=83 Identities=10% Similarity=-0.036 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
.+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+.+.....+.+...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444444555555555544443221111 233444444455555555555555544443333344444444444
Q ss_pred hcCCC
Q 011652 211 GKDPN 215 (480)
Q Consensus 211 ~~~~~ 215 (480)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.011 Score=52.35 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=26.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILA-----DVA-MYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
..+...+.+.|++++|.++|+++....... +.. .+-..+-++...||...|...+++....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334445555555555555555554322111 111 1112222344455666666666655543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0035 Score=60.01 Aligned_cols=142 Identities=12% Similarity=0.063 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHHHHHHHc--C---CHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhC--------CChHHHHHHHHH
Q 011652 300 GILADVAMYNALIGAFCKA--N---KFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGR--------GETDEAYRVFRR 365 (480)
Q Consensus 300 ~~~~~~~~~~~li~~~~~~--~---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~ 365 (480)
+.+.+...|...+++.... + +...|..+|++..+. .|+ ...+..+..++... .+...+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3455677777777764432 2 266788888888876 343 23344333333221 112333444444
Q ss_pred HHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011652 366 MIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 366 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 443 (480)
... ..+.++..|..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|.+.++++... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 333 245566788888777777899999999999998876 68888888999999999999999999988864 444
Q ss_pred HHHH
Q 011652 444 GETF 447 (480)
Q Consensus 444 ~~~~ 447 (480)
..+|
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 4444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.2e-05 Score=51.79 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=45.7
Q ss_pred CCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011652 353 RGETDEAYRVFRRMIKLCE--ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 430 (480)
.|+++.|+.+++++.+..+ ++...+..+..+|.+.|++++|..+++. ...+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566677777777666322 1344455567777777777777777766 22211 123444445666777777777777
Q ss_pred HHHH
Q 011652 431 LLED 434 (480)
Q Consensus 431 ~~~~ 434 (480)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0041 Score=59.62 Aligned_cols=140 Identities=9% Similarity=-0.030 Sum_probs=105.0
Q ss_pred CCCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 011652 335 GVAPNSRTCNIILNGLIGR-----GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG--------ELEKAFKVWKYMK 401 (480)
Q Consensus 335 ~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~ 401 (480)
+.+.+...|...+++.... ++...|..+|+++.+..|.+...|..+..++.... +...+.+...+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456778888888875432 33778999999999977778888877666554432 2334444444433
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 402 LK-RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 402 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.. ....+...|..+.......|++++|...++++.+.+ |+...|..+.+.+...|+.++|.+.+++...+++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 32 123355778877777777899999999999999865 68888999999999999999999999999988865
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0033 Score=51.01 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN--SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
..+..+...+...|++++|...+++..+.+..+. ...+..+...+.+.|++++|...+++.....+.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3455555566666777777777766665432221 24555666666667777777777776666555556666666666
Q ss_pred HHhcCCHHHHH
Q 011652 384 FCQGGELEKAF 394 (480)
Q Consensus 384 ~~~~g~~~~a~ 394 (480)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 66666654443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=53.72 Aligned_cols=79 Identities=9% Similarity=-0.084 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ--NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
.|..+...+...|++++|+..|+........+ ...++..+..++...|++++|...+++.....+....++..+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444445555555555555555554432111 1234555555555555555555555555543333334444444444
Q ss_pred h
Q 011652 211 G 211 (480)
Q Consensus 211 ~ 211 (480)
.
T Consensus 117 ~ 117 (168)
T CHL00033 117 H 117 (168)
T ss_pred H
Confidence 3
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.8e-05 Score=40.76 Aligned_cols=29 Identities=31% Similarity=0.724 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34445555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.03 Score=48.06 Aligned_cols=65 Identities=5% Similarity=0.001 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHH---HHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETF---CIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
++..+-.....+.+.|++++|.+.|+.+....|.+..+- -.++.++.+.+++++|...+++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333333444455566777777777777766655333322 34455666677777777777766654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.039 Score=49.28 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=38.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (480)
|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++-.. +-++.-|..++.+|.+.|+..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHH
Confidence 344444555555444433332 24555555555555555555554443221 123344555555555555555
Q ss_pred HHHHHHHH
Q 011652 392 KAFKVWKY 399 (480)
Q Consensus 392 ~a~~~~~~ 399 (480)
+|..+...
T Consensus 255 eA~~yI~k 262 (319)
T PF04840_consen 255 EASKYIPK 262 (319)
T ss_pred HHHHHHHh
Confidence 55555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.056 Score=50.91 Aligned_cols=352 Identities=11% Similarity=0.096 Sum_probs=180.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.+...|..+|.---...+.+.+...++.+...-|.-..-|......-.+.|..+.+.++|++.+. |++.+...|...+.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 45556666666555555567777777777766665555666666777788888888888888876 46777777777665
Q ss_pred HHH-ccCChhhHHHHHHHhhc---CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH---h
Q 011652 175 ALC-KSKNVRKAQEIFDCMKD---RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC---K 247 (480)
Q Consensus 175 ~~~-~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 247 (480)
.+. ..|+.+.....|+.... ..-.+...|...|..-..++++.....+|++.++. | ...|+....-|. +
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHh
Confidence 444 45677777778887766 12234566778888777888888888888888763 2 122222222221 1
Q ss_pred c------CCHHHHHHHHHHhhhC-C---CCccHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011652 248 A------GRVDEALGIVKSMDST-V---CRPTSFIYSVLVHTYG-VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFC 316 (480)
Q Consensus 248 ~------g~~~~a~~~~~~~~~~-~---~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 316 (480)
. ...+++.++-...... . ..+.......-+.-.. ..+..+++.....+.. ..--..+.
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~ 266 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQ 266 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHH
Confidence 1 1222222222221110 0 0000000111000000 0011111111111100 00001122
Q ss_pred HcCCHhHHHHHHHHHHhCC---C----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 011652 317 KANKFKNVYRVLKDMNSKG---V----APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE 389 (480)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~---~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 389 (480)
...........++.-...- + .++..+|...+.--...|+.+.+.-++++..-.+..-...|--.++.....|+
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence 2222233333333333221 1 12345566666666777777777777777665444444555555555555677
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 011652 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETF-GKLRKLLIKEGREDVLK 464 (480)
Q Consensus 390 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~ 464 (480)
.+-|..++....+--++-.+.+-..-....-..|+++.|..+++...+.- |+.... ..-+....+.|..+.+.
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 77777766665543222122221111222334467777777777776542 443322 22344555666666666
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0024 Score=47.54 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=42.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCC---ChhhHHHHHHHhhcC
Q 011652 139 RKYARVQKVEEAVYTFNVMQKYGVTQN--LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIP---DSKTYSILLEGWGKD 213 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 213 (480)
.++-..|+.++|+.+|++....|+... ...+-.+.+.+...|++++|..++++....++. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445555555555555555543332 223344445555555555555555555443222 222222233344455
Q ss_pred CChhHHHHHHHHHH
Q 011652 214 PNLPRAREIFREMV 227 (480)
Q Consensus 214 ~~~~~a~~~~~~~~ 227 (480)
|+.++|+..+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0037 Score=53.52 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC---ChhhHHHHHH
Q 011652 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK---NVRKAQEIFD 190 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~ 190 (480)
+....-++.-...+|.|.+.|..|...|...|+++.|..-|....+.. ++++..+..+..++.... ...++..+|+
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 333444444455666777777777777777777777777777776654 456666666655544332 3556777777
Q ss_pred HhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 191 CMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
++....+.|+.+...|...+...|++.+|...|+.|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 777766667777777777777777777777777777765
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0016 Score=52.66 Aligned_cols=79 Identities=10% Similarity=-0.010 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAP--NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
.+..+...+...|++++|...+++.......+ ...++..+...+...|+.++|...++......+....++..+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444445555555555555555554432111 1124444555555555555555555555543333334444444444
Q ss_pred H
Q 011652 385 C 385 (480)
Q Consensus 385 ~ 385 (480)
.
T Consensus 117 ~ 117 (168)
T CHL00033 117 H 117 (168)
T ss_pred H
Confidence 3
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0042 Score=53.18 Aligned_cols=100 Identities=9% Similarity=0.157 Sum_probs=81.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG---ELEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l 415 (480)
|...|..|...|...|+.+.|...|.+..+..++++..+..+..++.... ...++..+|+++...+.. |+.+...|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHHH
Confidence 77888888899999999999999999888877888888888887776543 355788888888887643 67777778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC
Q 011652 416 INGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
...+...|++.+|...|+.|++..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC
Confidence 888888899999999999988754
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.05 Score=49.34 Aligned_cols=386 Identities=10% Similarity=0.112 Sum_probs=198.5
Q ss_pred HHHHHHHHHhhcCC---CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHH--HHHhCCHHHHHH
Q 011652 79 LAFCFFKWAEKQQN---YEHS-VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRK--YARVQKVEEAVY 152 (480)
Q Consensus 79 ~a~~~~~~~~~~~~---~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~ 152 (480)
+|.++|-.+..... +... ....+.++++|. .++.+.....+....+..+. ..|..+..+ +-+.+.+.+|.+
T Consensus 24 esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~--s~~l~LF~~L~~Y~~k~~~kal~ 100 (549)
T PF07079_consen 24 ESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGK--SAYLPLFKALVAYKQKEYRKALQ 100 (549)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhhhHHHHHH
Confidence 78888877754332 1112 223455666665 45577777777776665542 234444443 347788999999
Q ss_pred HHHHHHhc--CCCCC---HH---------HHHHHHHHHHccCChhhHHHHHHHhhcC-----CCCChhhHHHHHHHhhcC
Q 011652 153 TFNVMQKY--GVTQN---LA---------AFNGLLSALCKSKNVRKAQEIFDCMKDR-----FIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 153 ~~~~~~~~--~~~~~---~~---------~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 213 (480)
.+....++ +..+. .. .-+..+.++...|.+.++..+++++... ...+..+|+.++-.+++.
T Consensus 101 ~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 101 ALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 88777665 33332 11 1145567778899999999999998762 336888888755554331
Q ss_pred --------CC-------hhHHHHHHHHHHHc------CCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCccH
Q 011652 214 --------PN-------LPRAREIFREMVDT------GCNPDIVTYGIMVDVLCKAG--RVDEALGIVKSMDSTVCRPTS 270 (480)
Q Consensus 214 --------~~-------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~ 270 (480)
.. ++.+.-+..++... .+.|.......++....-.. +..--.++++.....-+.|+.
T Consensus 181 YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~ 260 (549)
T PF07079_consen 181 YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNY 260 (549)
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCch
Confidence 11 12222222333211 13333333334433322211 111112222222233333332
Q ss_pred HH-HHHHHHHhhccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-------
Q 011652 271 FI-YSVLVHTYGVENRIEDAVDTFLEMEKNGILA----DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP------- 338 (480)
Q Consensus 271 ~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p------- 338 (480)
.. ...+..-+.. +.+++..+.+.+....+.+ =..++..++....+.++...|.+.+.-+.-..+..
T Consensus 261 ~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kll 338 (549)
T PF07079_consen 261 DLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLL 338 (549)
T ss_pred hHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhh
Confidence 21 1122222222 3333333333332211100 12344555555555555555555544433221000
Q ss_pred ------------ChhhH------------------------HHHHH---HHHhCCC-hHHHHHHHHHHHhcCCCCHHHHH
Q 011652 339 ------------NSRTC------------------------NIILN---GLIGRGE-TDEAYRVFRRMIKLCEADADTYT 378 (480)
Q Consensus 339 ------------~~~~~------------------------~~l~~---~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 378 (480)
|...+ ..++. -+-+.|. -++|+.+++.+.+-.+.|...-+
T Consensus 339 ls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n 418 (549)
T PF07079_consen 339 LSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN 418 (549)
T ss_pred cCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH
Confidence 00001 11111 1223344 77888888888774455554444
Q ss_pred HHHH----HHHh---cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 379 MMIK----MFCQ---GGELEKAFKVWKYMKLKRFIPS----MHTFSVLING--LCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 379 ~l~~----~~~~---~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
.+.. +|.+ ...+.+-.++-+-+.+.|++|- ...-|.+..+ +...|++.++.-.-..+.+ +.|++.
T Consensus 419 ~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~ 496 (549)
T PF07079_consen 419 IVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQ 496 (549)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHH
Confidence 3332 2322 2344444555555556777763 2334444443 4567999988877666665 678999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 446 TFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
+|..+.-++....++++|..++.++.
T Consensus 497 ~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 497 AYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999888889999999999988764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00035 Score=46.52 Aligned_cols=52 Identities=12% Similarity=0.313 Sum_probs=30.6
Q ss_pred hCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
..|++++|.++|+.+....|.+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666555556666666666666666666666666655554
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.013 Score=52.24 Aligned_cols=294 Identities=11% Similarity=0.038 Sum_probs=178.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD 213 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (480)
.......+.+..++..|+..+...++.. +.+...|..-...+...|++++|.--.+.-.+..+-......-.-+++...
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 3344567777888888888888888875 444555666566677777777776665554442222233444444444444
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CccHHHHHHH-HHHhhccCCHHHHHH
Q 011652 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTSFIYSVL-VHTYGVENRIEDAVD 291 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~ 291 (480)
++..+|.+.++ +...+ ....++..++.+..... +|...++..+ ..++...|++++|..
T Consensus 131 ~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 55555554444 11111 11222333333322221 2333444433 456778899999988
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHhHHHHHHHHHHhCCCCCChhhHH---HHH----------HHHHhCCCh
Q 011652 292 TFLEMEKNGILADVAMYNALIG--AFCKANKFKNVYRVLKDMNSKGVAPNSRTCN---IIL----------NGLIGRGET 356 (480)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~---~l~----------~~~~~~~~~ 356 (480)
+-..+.+.. ....+...++ ++.-.++.+.+...|++.+..+ |+...-. ... +-..+.|++
T Consensus 191 ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 191 EAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 887777652 2223334443 3445778899999999888763 3332211 111 224678999
Q ss_pred HHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHH
Q 011652 357 DEAYRVFRRMIK----LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT--FSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 357 ~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~ 430 (480)
..|.+.+.+.+. ...++...|........+.|+.++|+.--++....+ +... |..-..++...+++++|.+
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 456777888888888999999999999988887753 2222 3333344556688999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 011652 431 LLEDMIEKGIRP-SGETFGKLRKLLIK 456 (480)
Q Consensus 431 ~~~~~~~~~~~p-~~~~~~~l~~~~~~ 456 (480)
-+++..+..-.+ ...++.....++-+
T Consensus 343 d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 343 DYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHH
Confidence 999887643222 23445444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00036 Score=46.45 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=35.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
.+.|++++|+++|+.+....|.+...+..+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35566777777777776666666666667777777777777777777766664
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.01 Score=46.80 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCCHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV-TQNLAAFNGL 172 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 172 (480)
|++.--..+...+.+.|+..+|...|++....-. .+......+.++....+++..|...++.+.+... ..++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 5555556677777778888888888877655433 6777777777777777888888887777766421 0122234445
Q ss_pred HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHH
Q 011652 173 LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIF 223 (480)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (480)
.+.+...|....|+.-|+....- -|+...-......+.+.|+.+++..-+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~-ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY-YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 66777777777777777776652 234433333344445556555544433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00069 Score=45.19 Aligned_cols=65 Identities=18% Similarity=0.063 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhh
Q 011652 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG-REDVLKFLQEKMNLLV 474 (480)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~l~ 474 (480)
...|..+...+...|++++|+..|++.++.. +.+...+..+..++.+.| ++++|.+.+++..+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 4455666666666666666666666666543 223445555666666666 5666666666665554
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0022 Score=54.57 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=61.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhH
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (480)
-+.+.++|++|+..|.+..+..|.+...|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 34566777777777777777776667777777777777777777777766666654 33455677777777777777777
Q ss_pred HHHHHHhhcC
Q 011652 186 QEIFDCMKDR 195 (480)
Q Consensus 186 ~~~~~~~~~~ 195 (480)
.+.|++..+-
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 7777666654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00068 Score=44.59 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=42.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+...+.+.|++++|...|+.+.+..+.+...+..+..++...|++++|...|+.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677777777777777777777777777777777777777777777777777654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.1 Score=50.01 Aligned_cols=60 Identities=12% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
..|..|.+-....|.++.|.+.--.+.+. ++-|....|..+.-+-|....+.-.-+.|-+
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmk 1082 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMK 1082 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 44455555566678888887765555432 4556777787776655554444333333333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.01 Score=44.21 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=4.7
Q ss_pred CCHHHHHHHHHHH
Q 011652 284 NRIEDAVDTFLEM 296 (480)
Q Consensus 284 g~~~~a~~~~~~~ 296 (480)
|+.++|+.+|++.
T Consensus 15 G~~~~Ai~~Y~~A 27 (120)
T PF12688_consen 15 GREEEAIPLYRRA 27 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 3333333333333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0037 Score=50.80 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHH
Q 011652 372 ADADTYTMMIKMFCQ-----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK----------------GIVSDSCV 430 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~ 430 (480)
.+..+|..+++.|.+ .|.++=....++.|.+.|+.-|..+|+.|+..+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344444444444442 244444445555555555555555555555544321 13455777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 431 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
++++|...|+-||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0022 Score=56.86 Aligned_cols=131 Identities=11% Similarity=-0.052 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHHH
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIK-----LC-EADADTYTMMIKMFCQGGELEKAFKVWKYMK----LKRFI-PSMHT 411 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-p~~~~ 411 (480)
|..+-+.|.-.|+++.|+...+.-.. +. ......+..+..++.-.|+++.|.+.++... +.|-. ....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44444445555666666655443322 11 1123445556666666666666666665432 22211 12233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 412 FSVLINGLCDKGIVSDSCVLLEDMIE----K-GIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
...|..+|.-..+++.|+.++++-+. . +..-....+-+|..++...|..++|..+.+.-.++
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44455555555666666665554321 1 11223445556666666666666666666655544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00089 Score=44.01 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
...+.+.|++++|.+.|+++.+.... +...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555566666666666666655421 445555566666666666666666666654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0012 Score=44.06 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHh
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQK 159 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 159 (480)
++..|..+...+...|++++|+..|++..+.++.+...|..+..++...| ++++|++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566667777777777777777777777766666667777777777777 57777777766655
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.15 Score=48.57 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHh
Q 011652 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCM 192 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 192 (480)
+.+.-+++++++|-.|+... +...++-.|.+.+|.++|.+-
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 33444567777776676543 344556677888888777654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.038 Score=46.17 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+-.....+...|++.+|.+.|+.+....| ....+...++.++-+.|+++.|...++.+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344555667777777777777776544 34455566666777777777777777776654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0062 Score=49.56 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=62.9
Q ss_pred CChhhHHHHHHHhhc-----CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHH
Q 011652 198 PDSKTYSILLEGWGK-----DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFI 272 (480)
Q Consensus 198 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (480)
.+..+|..+++.+.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 366666666666653 34555556666666666666666666666666554 3221 1111111111
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011652 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320 (480)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 320 (480)
-.-.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 114 --------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 --------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0112456678888888888888888888888888877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.028 Score=43.83 Aligned_cols=87 Identities=13% Similarity=-0.029 Sum_probs=64.3
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 429 (480)
+...|++++|..+|+-+..-.+.+..-|..|..++-..+++++|...|......+.. |+..+-....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 456788888888888777766667777777777777788888888888776655432 5555666777788888888888
Q ss_pred HHHHHHHH
Q 011652 430 VLLEDMIE 437 (480)
Q Consensus 430 ~~~~~~~~ 437 (480)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 88887776
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.096 Score=44.00 Aligned_cols=131 Identities=14% Similarity=0.095 Sum_probs=69.1
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH-----
Q 011652 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL----- 347 (480)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~----- 347 (480)
.+.++.++.-.|.+.-....+.+..+...+.++.....+.+.-.+.|+.+.|...|++..+..-..+..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555555556666666666666665444455556666666666666666666666554432222333332222
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
..+.-.+++..|...+.++....+.++...|.-.-+..-.|+...|.+.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22334455555555555555544445555444444444455566666666655554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.069 Score=42.30 Aligned_cols=131 Identities=10% Similarity=0.062 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC--CCCHHHHHH
Q 011652 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EADADTYTM 379 (480)
Q Consensus 302 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 379 (480)
.|+...--.+..+....|+..+|...|.+...--+.-|......+.++....+++..|...++.+.+-. ..++.+--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 455555555666666777777777777666654344455566666666666677777777666665511 112223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
+.+.+...|.+..|+..|+.....- |+...-......+.++|+.+++..-+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 5566666677777777776666543 3433333344445566655555443333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0035 Score=55.65 Aligned_cols=282 Identities=15% Similarity=0.094 Sum_probs=143.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChhhHHHHHHHhh------cCCCCChhhHHHHHH
Q 011652 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLA----AFNGLLSALCKSKNVRKAQEIFDCMK------DRFIPDSKTYSILLE 208 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~l~~ 208 (480)
.-+++.|+....+.+|+..++.| ..|.. +|..|..+|.-.+++++|++....=. ....-...+...|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45788899999999999998887 33433 45666677777788888877543211 111112233344444
Q ss_pred HhhcCCChhHHHHHHHHHH----HcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc
Q 011652 209 GWGKDPNLPRAREIFREMV----DTGCN-PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE 283 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (480)
.+--.|.+++|.-.-.+-+ +.|-. .....+..+.+.|...|+.-.... -...|-.+...+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------
Confidence 5555566666655433321 22211 112233334444444332110000 000010111000
Q ss_pred CCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCC-CChhhHHHHHHHHHhC
Q 011652 284 NRIEDAVDTFLEME----KNGI-LADVAMYNALIGAFCKANKFKNVYRVLKDMNS----KGVA-PNSRTCNIILNGLIGR 353 (480)
Q Consensus 284 g~~~~a~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~ 353 (480)
..++.|.+.|.+-. +.|- -.-...|..+...|.-.|+++.|+...+.-.. -|-. .....+..+.++++-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 01223333333211 1110 01123455555556666777777665543222 1211 1223556667777777
Q ss_pred CChHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhc
Q 011652 354 GETDEAYRVFRRMIK------LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL----K-RFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~ 422 (480)
|+++.|.+.++.... .-........+|...|.-..++++|+.++.+-.. . +..-....+..|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 788888777766543 1223344555667777777777777777664321 1 1112456677788888888
Q ss_pred CChHHHHHHHHHHH
Q 011652 423 GIVSDSCVLLEDMI 436 (480)
Q Consensus 423 g~~~~A~~~~~~~~ 436 (480)
|..++|+.+.+.-+
T Consensus 329 g~h~kAl~fae~hl 342 (639)
T KOG1130|consen 329 GEHRKALYFAELHL 342 (639)
T ss_pred hhHHHHHHHHHHHH
Confidence 88888877766554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.099 Score=43.92 Aligned_cols=131 Identities=9% Similarity=0.006 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCC-----HHHHHHH
Q 011652 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEAD-----ADTYTMM 380 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-----~~~~~~l 380 (480)
+.+.++..+...|.+.-....+.+..+...+.++.....+.+.-.+.|+.+.|...|++..+ ....+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556666666777777778888888776666777778888888888888888888887665 22222 2333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
...|.-.+++..|...+.++...+.. |+...|.-.-+..-.|+..+|++.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455667777888888777766533 4455555444455567888888888888764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.14 Score=45.77 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
..+.+..+.-+...|+...|.++-.+.. -|+..-|-..+.+++..++|++-.++... . -++.-|...+.+|
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK---VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 3466666777888999988888876654 58889999999999999999988886543 1 2457899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011652 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (480)
.+.|...+|..+..++ ++ ..-+..|.+.|++.+|.+..-+
T Consensus 248 ~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999988872 21 3456777888888888766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.021 Score=44.86 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-----EKGIRPSGETFG 448 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~ 448 (480)
+...++..+...|++++|..+.+.+....+. +...|..++.+|...|+..+|.+.|+++. +.|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4556777778888999999998888876533 77888888999999999999998888775 348888877643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.048 Score=45.54 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=9.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 011652 381 IKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
.+.|.+.|.+..|..-++.+.+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3444444444444444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.006 Score=47.95 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----hcCCCCCHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ-----KYGVTQNLAAF 169 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 169 (480)
+...++..+...|+++.|..+.+.+....|.+...|..+|.++...|+...|.+.|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 455566667778888888888888888888888888888888888888888888887663 34777776653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.013 Score=50.71 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHH
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---VETFCIIMRKYARVQKVEEAVYTFNVMQKYG--VTQNLAAFNGLLS 174 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~ 174 (480)
|...+..+.+.|++++|...|+.+....|.+ +.++..+...|...|++++|...|+.+.+.- -+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344455555555555555544411 3444555555555555555555555554321 0111222333333
Q ss_pred HHHccCChhhHHHHHHHhhc
Q 011652 175 ALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~ 194 (480)
++...|+.++|..+|+.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.31 Score=46.49 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
...-++++.+.|-.|+... +...++-.|++.+|-++|.+-
T Consensus 619 li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 3344566667776666543 334555667777777776543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.24 Score=45.10 Aligned_cols=376 Identities=10% Similarity=0.053 Sum_probs=212.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.-+++-+.+...+ .|..+|-.+|.-+...+..++..+++++|...-+.-+.+|..-+.+-...+++.....+|.+..
T Consensus 27 D~lrLRerIkdNP---tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 27 DELRLRERIKDNP---TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred hHHHHHHHhhcCc---hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 3457888886654 4899999999999999999999999999988877777889999998888999999999999888
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChh------hHHHHHHHhhc--CCCC-ChhhHHHHHHHh---hcCCCh------hHHH
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVR------KAQEIFDCMKD--RFIP-DSKTYSILLEGW---GKDPNL------PRAR 220 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~--~~~~-~~~~~~~l~~~~---~~~~~~------~~a~ 220 (480)
... .+...|...+.-..+.+..- ...+.|+-... .+.| ....|+..+..+ -..|.+ +...
T Consensus 104 ~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 764 45677777776554433211 11223333322 3333 444566555543 334444 4455
Q ss_pred HHHHHHHHcCCCC------ChhhHHHHHHHHH-------hcCCHHHHHHHHHHhhh--CCC----CccHHHHHH------
Q 011652 221 EIFREMVDTGCNP------DIVTYGIMVDVLC-------KAGRVDEALGIVKSMDS--TVC----RPTSFIYSV------ 275 (480)
Q Consensus 221 ~~~~~~~~~~~~~------~~~~~~~l~~~~~-------~~g~~~~a~~~~~~~~~--~~~----~~~~~~~~~------ 275 (480)
..|.+++..-+.- |-..|..=++-.. ...-+-.|...++++.. .|. +.+..+++-
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 5666666421110 1111111111100 01123455555555532 121 112222221
Q ss_pred -----HHHHhhc-----cCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhH
Q 011652 276 -----LVHTYGV-----ENRI--EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC 343 (480)
Q Consensus 276 -----l~~~~~~-----~g~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 343 (480)
.|+--.. .|+. ....-++++.... +.-....|----.-+...++-+.|........+. .|+ .
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L 335 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---L 335 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---h
Confidence 2221111 1111 1222233333321 1123333433333445566777777666554332 222 1
Q ss_pred HHH-HHHHHhCCChHHHHHHHHHHHh------------------------------cCCCCHHHHHHHHHHHHhcCCHHH
Q 011652 344 NII-LNGLIGRGETDEAYRVFRRMIK------------------------------LCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 344 ~~l-~~~~~~~~~~~~a~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
... -..|.-.++.+.....|+.... ....-..+|...+....+...++.
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~a 415 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEA 415 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHH
Confidence 111 1122222222222222222111 001123456778888888889999
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHH
Q 011652 393 AFKVWKYMKLKR-FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET-FGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 393 a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
|.++|-+..+.+ +.+++..+++++..++. |+..-|..+|+--+.. .||... ....+..+.+-++-+.|+.+++
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 999999999888 56788889999987765 7888999999876653 344444 3456677778888888888887
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.066 Score=41.88 Aligned_cols=90 Identities=8% Similarity=-0.009 Sum_probs=68.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
.-+...|++++|..+|.-+.-.++. +..-+..|..++...+++++|...|.......+.|+..+-....+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 3456678888888888887765444 555667777777778888888888887776445666666677888888888888
Q ss_pred HHHHHHHHHhC
Q 011652 393 AFKVWKYMKLK 403 (480)
Q Consensus 393 a~~~~~~~~~~ 403 (480)
|...|....++
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 88888888773
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.024 Score=49.08 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=40.1
Q ss_pred HhCCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCh
Q 011652 351 IGRGETDEAYRVFRRMIKLCEAD---ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF--IPSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~ 425 (480)
.+.|++++|...|+.+.+..|.+ +..+..+..+|...|++++|...|+.+...-. +.....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 33445555555555554432222 23444445555555555555555555543210 01123333344444455555
Q ss_pred HHHHHHHHHHHH
Q 011652 426 SDSCVLLEDMIE 437 (480)
Q Consensus 426 ~~A~~~~~~~~~ 437 (480)
++|..+|+++++
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.007 Score=40.78 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=27.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|...|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555555555555554322 444444455555555555555555555554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0096 Score=40.10 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=44.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
..+.+.++++.|.+.++.+...+|.++..+......+...|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456777888888888888887777777777777778888888888888887777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.35 Score=43.27 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=78.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcC
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKMFCQGG 388 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g 388 (480)
..++.+.|+..++-.+++.+-+....|+ . ...|.+...-+.+..-+++..+ .-+.+......+.++-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~--i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPD--I----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChH--H----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 4577888888888888888887744443 2 2334433334444545555444 33445566777778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHc
Q 011652 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK-GIVSDSCVLLEDMIEK 438 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 438 (480)
++..|..--+..... .|....|..|...-... |+-.++...+.+....
T Consensus 344 e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 344 EFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888877766666553 37777887777765444 8888888888877754
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.42 Score=43.37 Aligned_cols=167 Identities=12% Similarity=0.070 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCChhhHH
Q 011652 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNG---ILADVAMYNALIGAFCK---ANKFKNVYRVLKDMNSKGVAPNSRTCN 344 (480)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~ 344 (480)
.+...++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|..++..+....-.+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455567888888999999988887651 11122222334445666 788899999988866666667788888
Q ss_pred HHHHHHHh---------CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---HH-HHhCCCC-
Q 011652 345 IILNGLIG---------RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL----EKAFKVW---KY-MKLKRFI- 406 (480)
Q Consensus 345 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~---~~-~~~~~~~- 406 (480)
.+...|-. ....+.|...|.+.-+.. |+..+--.++..+...|.- .+..++- .. +.++|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 88776632 123566666666655422 4433323333333333332 2233333 11 1122222
Q ss_pred --CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 407 --PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 407 --p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.+.-.+..++.++.-.|+.++|.+..++|...
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 23334455666777777777777777777754
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.43 Score=42.75 Aligned_cols=287 Identities=14% Similarity=0.122 Sum_probs=172.2
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHHH--hhcCCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG--WGKDPNLPRAREIFREMVDTGCNPDIV--TYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 253 (480)
-.|+-..|.++-.+.......|....-.++.+ -.-.|+++.|.+-|+.|... |... -...|.-..-+.|..+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35666666666666554333344444444433 33468888888888888752 2211 12223333346778888
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHH--HH-cCCHhHHHHH
Q 011652 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAM--YNALIGAF--CK-ANKFKNVYRV 327 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~li~~~--~~-~~~~~~a~~~ 327 (480)
|..+-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+- .. ..+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 877777665542 3335567778888888888888888887765432 2233221 11222211 11 2345555555
Q ss_pred HHHHHhCCCCCChhh-HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC
Q 011652 328 LKDMNSKGVAPNSRT-CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RF 405 (480)
Q Consensus 328 ~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~ 405 (480)
-.+..+ +.||..- -.....++.+.|+..++-.+++.+.+. .|.+..+.. ..+.+.|+ .+..-++..... ..
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA-EPHPDIALL--YVRARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-CCChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhc
Confidence 555444 3555432 333456788999999999999999873 455544332 23344454 343333333221 12
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhhCCC
Q 011652 406 IP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK-EGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 406 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~l~~~~ 477 (480)
+| +......+..+-...|++..|..--+.... ..|....|..+.+.-.. .|+-.++..++-+..+....|
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 23 556777778888889999888877776654 46788888877776655 499999999988877665544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.42 Score=42.18 Aligned_cols=163 Identities=17% Similarity=0.141 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHcCCH---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKF---KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
.++..++.+|...+.. ++|..+++.+...... .+.++..-+..+.+.++.+.+.+.+.+|..........+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 4566677777776654 4455566666544222 24455556666666888888888888888854434444555555
Q ss_pred HH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH-H---HHHHhcCC------hHHHHHHHHHHHH-cCCCCCHHHH
Q 011652 383 MF---CQGGELEKAFKVWKYMKLKRFIPSMH-TFSVL-I---NGLCDKGI------VSDSCVLLEDMIE-KGIRPSGETF 447 (480)
Q Consensus 383 ~~---~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l-~---~~~~~~g~------~~~A~~~~~~~~~-~~~~p~~~~~ 447 (480)
.+ ... ....|...+..+....+.|... ....+ + ......++ .+....++....+ .+.+.+..+.
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44 333 3345556665555444444443 11111 1 11112111 3344444443322 2334444443
Q ss_pred HHH-------HHHHHhcCCHHHHHHHHHHH
Q 011652 448 GKL-------RKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 448 ~~l-------~~~~~~~g~~~~a~~~~~~~ 470 (480)
.++ ...+.+.+++++|.++++-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 333 34566788999999998843
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.17 Score=48.36 Aligned_cols=121 Identities=16% Similarity=0.077 Sum_probs=69.6
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhcCChHHHH
Q 011652 353 RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR--F-IPSMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A~ 429 (480)
..+.+.|.+++..+.+..|.+..-.-.-.+.+...|++++|.+.|+...... . +.....+.-+...+.-.+++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3456667777777766555555444455566666777777777777554311 0 012234444556666677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHhhh
Q 011652 430 VLLEDMIEKGIRPSGETFGKLRK-LLIKEGRE-------DVLKFLQEKMNLLV 474 (480)
Q Consensus 430 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~~~~l~ 474 (480)
..|..+.+.. ..+..+|..+.. ++...|+. ++|.+++++...+.
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 7777777543 234444443332 33346666 77777777766554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.51 Score=42.88 Aligned_cols=166 Identities=11% Similarity=0.037 Sum_probs=104.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCccHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTV---CRPTSFIYSVLVHTYGV---ENRIEDAVDTFLEMEKNGILADVAMYNA 310 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (480)
+...++-.|....+++..+++.+.+.... +......-....-++.+ .|+.++|++++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455557888899999999999998752 11122222344455666 8999999999999666666778888888
Q ss_pred HHHHHHH----c-----CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC-hH---HHHHHHHHH---H--h---c
Q 011652 311 LIGAFCK----A-----NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE-TD---EAYRVFRRM---I--K---L 369 (480)
Q Consensus 311 li~~~~~----~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~~~~---~--~---~ 369 (480)
+...|-. . ...++|...|.+.-+. .|+...=-.++..+...|. .+ +..++--.+ . + .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 8876643 1 1356777777766654 2443322122222222332 22 233333111 1 1 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
...+...+..++.++.-.|++++|.+..+.|....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33566677889999999999999999999998763
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0078 Score=41.20 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEK--GIR---PS-GETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.+++.+...|...|++++|+..|++.++. ... |+ ..++..+..++...|++++|.+++++..++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35556666666666666666666666532 111 11 334555666666777777777777666554
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.76 Score=44.82 Aligned_cols=114 Identities=12% Similarity=0.029 Sum_probs=86.7
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011652 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
.....+.+--+..+...|+..+|.++-.+.. -|+...|-.-+.+++..+++++-+++-+..+ ++.-|...+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 3445566777777888899999988877765 5888888888899999999988877766543 245677888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 417 NGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
.+|.+.|+.++|.+++.+.. +.. -...+|.+.|++.+|.++.-
T Consensus 752 e~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHH
Confidence 99999999999999887652 111 46678888888888776653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.048 Score=41.11 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSVLIN 417 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~ 417 (480)
.|+..+..+++.+|+..|++..|.++.+.+.+. +++-+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455555555555555555555555555554432 44444555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.47 Score=41.89 Aligned_cols=122 Identities=15% Similarity=0.091 Sum_probs=70.1
Q ss_pred HhcCChhHHHHHHHHHHhCC-CCCHHHHHHHHHH-------HHHhC-CHHHHHHHHHHHHhc--------CCCCCH----
Q 011652 108 AKIRQYQIMWDLVNAMRTKR-MLNVETFCIIMRK-------YARVQ-KVEEAVYTFNVMQKY--------GVTQNL---- 166 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~~-------~~~~~-~~~~a~~~~~~~~~~--------~~~~~~---- 166 (480)
.+.|+++.|..++.++.... ..++.....+.+. ....+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 56788888888888877654 3333333333322 23344 777777666655332 112222
Q ss_pred -HHHHHHHHHHHccCChh---hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 167 -AAFNGLLSALCKSKNVR---KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 167 -~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
.++..++.+|...+..+ +|.++++.+....+..+.++..-+..+.+.++.+++.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34555666666665533 4555555555544444555656666666677777777777777754
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.13 Score=49.00 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCC-CCCh------hhHHHHHHHhhc----CCChh
Q 011652 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-IPDS------KTYSILLEGWGK----DPNLP 217 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~------~~~~~l~~~~~~----~~~~~ 217 (480)
-..-+|.-+.+. +||. ...++....-.||-+.+++.+.+..+.. ...+ -.|...+..++. ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 334455555543 3444 3345666666788888888777765511 1111 224444443333 45677
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHhhhCC---CCccHHHHHHHHHHhhccCCHHHHHHHH
Q 011652 218 RAREIFREMVDTGCNPDIVTYGIM-VDVLCKAGRVDEALGIVKSMDSTV---CRPTSFIYSVLVHTYGVENRIEDAVDTF 293 (480)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (480)
.|.++++.+.+. -|+...|... .+.+...|++++|++.++...... .+.....+--+.-++...+++++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 888888888875 4666655443 356677889999999988754311 1122334445666778888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHHcCCH-------hHHHHHHHHHHh
Q 011652 294 LEMEKNGILADVAMYNALIG-AFCKANKF-------KNVYRVLKDMNS 333 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~-~~~~~~~~-------~~a~~~~~~~~~ 333 (480)
..+.+..-- +...|.-+.. ++...|+. ++|..+|.+...
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 998875322 3344443332 44556766 888888887654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.2 Score=45.97 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 378 TMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
..|+.-+...++.-+|-++..+..
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 344444445555555555554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.42 Score=40.43 Aligned_cols=181 Identities=13% Similarity=0.072 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
.+-.-+..-.+.|++++|.+.|+.+..+.| -...+...++-++-+.+++++|+..+++....-.......|...|.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 333334445678999999999999988766 45666777777888889999999999888765322223345455555
Q ss_pred HHc-------cCChhhHHHHHHHh---hcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011652 176 LCK-------SKNVRKAQEIFDCM---KDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245 (480)
Q Consensus 176 ~~~-------~~~~~~a~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (480)
++. .+|...+...|..+ ..++|.+..+ ..|..-...+... =...=..+.+.|
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya--------------~dA~~~i~~~~d~----LA~~Em~IaryY 177 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA--------------PDAKARIVKLNDA----LAGHEMAIARYY 177 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch--------------hhHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 442 22333333333333 3333322211 1111111111100 000012234566
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCccHH---HHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011652 246 CKAGRVDEALGIVKSMDSTVCRPTSF---IYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
.+.|.+..|..-+++|.+. .+.+.. ..-.+..+|...|-.++|.+.-.-+..
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 6666666666666666654 222222 233445566666666666665555444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.36 Score=40.28 Aligned_cols=203 Identities=11% Similarity=0.098 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
|.....+|....++++|...+.+..+. ...+...|. ....++.|.-+.+++.+. .--...|+-....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445666666777766655554421 011211111 112344555555555543 1123345555566777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcCCHH
Q 011652 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE------ADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 391 (480)
+|..+.|-..+++.-+. ....++++|++++++....+. .-...+....+.+++...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77766666555554331 223345555555555544111 11223444555666666666
Q ss_pred HHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 392 KAFKVWKYMKL----KRFIPSM-HTFSVLINGLCDKGIVSDSCVLLEDMIEKG---IRPSGETFGKLRKLLIKEGREDVL 463 (480)
Q Consensus 392 ~a~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a 463 (480)
+|-..+.+-.. ..-.|+. ..|...|-.+....++..|.++++.-.+.+ -.-+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 66555443221 1111222 334555555666667777777777644332 122345566666665 34666666
Q ss_pred HHHH
Q 011652 464 KFLQ 467 (480)
Q Consensus 464 ~~~~ 467 (480)
..++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.009 Score=40.90 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFI-PS-MHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.+++.+...|...|++++|...|++..+. |-. |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777766532 211 11 34566677777777777777777777653
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.088 Score=39.70 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC
Q 011652 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE-KGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g 458 (480)
...|+..+..+++.+|+..|++..|+++++...+ -+++.+..+|..|+.-+...-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4668999999999999999999999999999985 478888999999988766543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.23 Score=37.01 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
...+..+...|+-+.-.++++.+.+...+++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444455555555555555444444455555555555555555555555555555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.12 Score=39.46 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
...+-.-.....+.|++++|.+.|+.+..+-| -...+-..++.+|.+.+++++|...+++.++........-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 33333445556678888888888888888766 456667778888888888888888888888764322223354455
Q ss_pred HHHHc
Q 011652 174 SALCK 178 (480)
Q Consensus 174 ~~~~~ 178 (480)
.+++.
T Consensus 90 ~gL~~ 94 (142)
T PF13512_consen 90 RGLSY 94 (142)
T ss_pred HHHHH
Confidence 55443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.059 Score=49.50 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=45.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA---DTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
+...++.+..+|.+.|++++|+..|++..+..+.+. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777777777777777776444444 34777777777777777777777777664
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.85 Score=41.84 Aligned_cols=120 Identities=11% Similarity=0.124 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHHhCCCCC-ChhhHHH----HHHHHHh---CCChHHHHHHHHHHHh-cCCC----CHHHHHHHHHH--HH
Q 011652 321 FKNVYRVLKDMNSKGVAP-NSRTCNI----ILNGLIG---RGETDEAYRVFRRMIK-LCEA----DADTYTMMIKM--FC 385 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p-~~~~~~~----l~~~~~~---~~~~~~a~~~~~~~~~-~~~~----~~~~~~~l~~~--~~ 385 (480)
-++|..+++.+.+- .| |...-+. +=..|.+ ...+.+-..+-+-+.+ +.+| +...-|.|.++ +.
T Consensus 396 dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 67777777777663 22 2222222 1222222 2333344444333444 4444 33344445443 45
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 011652 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 449 (480)
..|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..++.+
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 67999998876555554 569999999999999999999999999986 4677777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.14 Score=47.12 Aligned_cols=66 Identities=6% Similarity=-0.149 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV---ETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
.+...|+.+..+|.+.|++++|+..|++..+.++.+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778999999999999999999999999988888554 45999999999999999999999999875
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.2 Score=43.54 Aligned_cols=340 Identities=12% Similarity=0.115 Sum_probs=177.3
Q ss_pred hCCCCCCHHHHHHH-----HHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHh
Q 011652 56 QSGIRVSPEIVEDV-----LEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY---QIMWDLVNAMRT 125 (480)
Q Consensus 56 ~~~~~~~~~~~~~~-----l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~ 125 (480)
.-|++++.+.+.++ +.++...+. .|.++-.|+....+ ....+|.....-+.+..+. +.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 45777777766543 444444444 68888888743322 1245666666666555322 222223333322
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChh
Q 011652 126 KRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ----NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSK 201 (480)
Q Consensus 126 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 201 (480)
. ......|..+.+.....|+++.|..+++.=...+... +..-+...+.-+...|+.+-...++-.+.... +..
T Consensus 503 ~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~--~~s 579 (829)
T KOG2280|consen 503 K-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL--NRS 579 (829)
T ss_pred c-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH--HHH
Confidence 1 2334457777777778888888888776533222110 11112233334444555555444444443210 111
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--Hhh----hCCCCccHHHHHH
Q 011652 202 TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK--SMD----STVCRPTSFIYSV 275 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--~~~----~~~~~~~~~~~~~ 275 (480)
.+.. -..+...|..+|.+..++. |..+ +-..|....+. ++..-+. ... ..+..|+. ..
T Consensus 580 ~l~~------~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~l---k~ 643 (829)
T KOG2280|consen 580 SLFM------TLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPAL---KT 643 (829)
T ss_pred HHHH------HHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhH---HH
Confidence 1111 1223445556665554421 1111 11122222222 2221111 100 01222222 22
Q ss_pred HHHHhhccCCH----------HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHH
Q 011652 276 LVHTYGVENRI----------EDAVDTFLEME-KNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCN 344 (480)
Q Consensus 276 l~~~~~~~g~~----------~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 344 (480)
....+.+.... ..-+++.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+.+ -||...|.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 23333333221 11122222222 12222233344555566777888888888877665 46888898
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI 424 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 424 (480)
.-+.+++..+++++-+++-+... ++.-|..++.+|.+.|+.++|.+++.+.... . -...+|.+.|+
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l------~---ekv~ay~~~~~ 785 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL------Q---EKVKAYLRVGD 785 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHHhcccHHHHhhhhhccCCh------H---HHHHHHHHhcc
Confidence 88999999999988877766543 2566778889999999999999988765321 1 56778888999
Q ss_pred hHHHHHHHHH
Q 011652 425 VSDSCVLLED 434 (480)
Q Consensus 425 ~~~A~~~~~~ 434 (480)
+.+|.++--+
T Consensus 786 ~~eAad~A~~ 795 (829)
T KOG2280|consen 786 VKEAADLAAE 795 (829)
T ss_pred HHHHHHHHHH
Confidence 9888876544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.21 Score=46.97 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
..-...+++-+-+.|..+.|+++- .|+.+ -.....+.|+++.|.++.++.. +...|..|....
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~~---rFeLAl~lg~L~~A~~~a~~~~-----~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFV---------TDPDH---RFELALQLGNLDIALEIAKELD-----DPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS---------S-HHH---HHHHHHHCT-HHHHHHHCCCCS-----THHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhc---------CChHH---HhHHHHhcCCHHHHHHHHHhcC-----cHHHHHHHHHHH
Confidence 334455555555556666555542 12211 2233345566665555443332 445566666666
Q ss_pred hcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011652 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (480)
.+.|+++-|.+.|.+..+ |..++-.|.-.|+.+.-.++.+.....
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 666666666655555432 344444455555555555555444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.4 Score=37.19 Aligned_cols=32 Identities=9% Similarity=0.026 Sum_probs=12.1
Q ss_pred CChhHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 011652 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA 142 (480)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 142 (480)
+.......+++.+...+..++..++.++..|+
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 33333344443333333333333333333333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.2 Score=44.15 Aligned_cols=139 Identities=19% Similarity=0.154 Sum_probs=69.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHH
Q 011652 107 LAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186 (480)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 186 (480)
+-+.|++++|...|-+.. +..++ ..+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI--~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETI--GFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHhcCCHHHHHHHHHHHc--ccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 345566666666554432 22111 23445555555566666666666666643 3334455666777777766666
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 187 EIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
+..+....+.. ..-....+..+.+.+-.++|..+-.+... .......+ +-..+++++|++.+..+
T Consensus 452 efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 452 EFISKCDKGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 55554442110 11133344444445555555444433322 22222222 33456777777777655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.12 E-value=2.1 Score=44.38 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=11.6
Q ss_pred HHHHHHHHHccC--ChhhHHHHHHHhh
Q 011652 169 FNGLLSALCKSK--NVRKAQEIFDCMK 193 (480)
Q Consensus 169 ~~~ll~~~~~~~--~~~~a~~~~~~~~ 193 (480)
...+|..|.+.+ .++.|+....+..
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344555555554 3444444444333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.18 Score=45.34 Aligned_cols=94 Identities=14% Similarity=0.012 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFG-KLRKLL 454 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~ 454 (480)
++..+.-+|.+.+++.+|.+...+....+. +|......-..+|...|+++.|...|+++++. .|+..... .++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 456667777777777777777777776653 36666666677777777777777777777763 45444443 333333
Q ss_pred HhcCC-HHHHHHHHHHHHh
Q 011652 455 IKEGR-EDVLKFLQEKMNL 472 (480)
Q Consensus 455 ~~~g~-~~~a~~~~~~~~~ 472 (480)
.+... .+...++|.+|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 33333 3334566666654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.93 Score=39.20 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=65.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhH
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (480)
.....|++.+|..+|.......+-+...-..++..|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44566777777777777766666555666666777777777777777776665432111111112223333333333333
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
..+-.+... .+.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 223 ~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333322 233555555566666666666666666555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.24 Score=46.65 Aligned_cols=156 Identities=11% Similarity=0.140 Sum_probs=88.0
Q ss_pred HHHhcCCHHHHHHHHH--HhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011652 244 VLCKAGRVDEALGIVK--SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
...-.++++++.++.. ++.. .-+....+.++..+.+.|-.+.|+.+..+-.. -.....+.|+.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCH
Confidence 3444677777666654 2221 11234466777777777777777766433221 12344567777
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
+.|.++.++. .+...|..|.......|+++-|++.+.+... +..|+-.|.-.|+.+.-.++.+...
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 7776654332 2566788888888888888888888777653 5666677777777777777777666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 402 LKRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 402 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
..| -++....++.-.|+.++..+++.+
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 655 244444555555766666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.28 Score=41.76 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011652 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK----------------GIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 452 (480)
.++-....++.|.+.|+.-|..+|..|+..+-+. .+-+=+++++++|...|+.||..+-..|+.
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444455555555555555555555444321 122346778888888888888888888888
Q ss_pred HHHhcCC-HHHHHHHHHHHHhhh
Q 011652 453 LLIKEGR-EDVLKFLQEKMNLLV 474 (480)
Q Consensus 453 ~~~~~g~-~~~a~~~~~~~~~l~ 474 (480)
++.+.|- .....++.--|.+++
T Consensus 167 ~FGr~~~p~~K~~Rm~yWmPkfk 189 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKRMLYWMPKFK 189 (406)
T ss_pred HhccccccHHHHHHHHHhhhhhc
Confidence 8877665 345555555555543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.87 Score=38.10 Aligned_cols=208 Identities=11% Similarity=0.107 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
-...|..-..+|...+++++|...+.+..+-.-.+. ..+-....+++|.-+.+++.+. +.-+..|+-....
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr-------slfhAAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-------SLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 455677777778888888888887776653211111 1112223355555666666552 2233455666677
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcCC
Q 011652 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT---G--CNPDIVTYGIMVDVLCKAGR 250 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~ 250 (480)
|..+|..+.|-..+++.-+ ..++-++++|+++|++...- + ...-...+...-+.+.+...
T Consensus 101 Y~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888888777777666543 12234556666666654321 0 11112234444555666666
Q ss_pred HHHHHHHHHHhhhC-----CCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHh
Q 011652 251 VDEALGIVKSMDST-----VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG---ILADVAMYNALIGAFCKANKFK 322 (480)
Q Consensus 251 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~ 322 (480)
+++|-..+.+-... .....-..|...|-.+.-..++..|.+.++.-.+.+ -.-+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 66665544432211 001111234444445555566667776666643322 1224455566665543 45555
Q ss_pred HHHHHH
Q 011652 323 NVYRVL 328 (480)
Q Consensus 323 ~a~~~~ 328 (480)
++..++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.26 Score=36.63 Aligned_cols=90 Identities=17% Similarity=0.073 Sum_probs=63.9
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCC
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSM---HTFSVLINGLCDKGI 424 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~---~~~~~l~~~~~~~g~ 424 (480)
++...|+++.|++.|.+.....|..+..||.-.+++.-.|+.++|+.-+++..+. |.. .. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 3566788888888888888777778888888888888888888888888777764 322 22 223333445667788
Q ss_pred hHHHHHHHHHHHHcC
Q 011652 425 VSDSCVLLEDMIEKG 439 (480)
Q Consensus 425 ~~~A~~~~~~~~~~~ 439 (480)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888777666
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.11 Score=46.59 Aligned_cols=138 Identities=14% Similarity=0.034 Sum_probs=79.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (480)
.+.+.+.|++..|...|++....-. |.+.-+.++..... ..-..+++.+..++.+.+++.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhHH
Confidence 4467788888888888887543210 00000111111111 122344566666777777777
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCCH-HHHHHHHHHh
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYG-IMVDVLCKAGRV-DEALGIVKSM 261 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~-~~a~~~~~~~ 261 (480)
.|++.-+......++|......-..++...|+++.|+..|+++++. .|+..... .++.+-.+.... +...++|..|
T Consensus 275 ~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 275 EAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766777777777777777777778887777777764 45443333 333333333333 3335666666
Q ss_pred hh
Q 011652 262 DS 263 (480)
Q Consensus 262 ~~ 263 (480)
..
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.2 Score=42.65 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-C-CCCHHHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG-V-TQNLAAFNGLL 173 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll 173 (480)
.|+.-+..+ +.|++..|.+.|....+..| ..+.++.-|...+...|++++|..+|..+.+.- - +--+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444332 34445555555555555444 334445555555555555555555555444321 0 11123344444
Q ss_pred HHHHccCChhhHHHHHHHhhcCC
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRF 196 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~ 196 (480)
.+..+.|+.++|...|+++.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 44455555555555555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.9 Score=42.13 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=65.2
Q ss_pred hHHHHHHHHHH---hCCCCCHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011652 114 QIMWDLVNAMR---TKRMLNVETFCIIMRKYAR---------VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN 181 (480)
Q Consensus 114 ~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (480)
+.|..+|.+.. ..+|.....|..+...+.. .....+|.++-+...+.+ +.|+.+...+..+..-.++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcc
Confidence 45566666666 3333334444444333321 123445556666666655 5566666666666666666
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 182 VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
++.|..+|++...-.|....+|....-...-.|+.++|.+.+++..+.
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 777777777766654555555555555555567777777777665543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.036 Score=32.80 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHH
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC 135 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 135 (480)
|..+...|.+.|++++|+++|+++.+..|.+...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 444444445555555555555555444444444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.85 Score=40.05 Aligned_cols=153 Identities=14% Similarity=0.028 Sum_probs=93.5
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHH----HHHHHhhcCCCh
Q 011652 141 YARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYS----ILLEGWGKDPNL 216 (480)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 216 (480)
....|++.+|-..++++.+. .|.|...++..=.+|.-.|+...-...++++.....++...|. .+.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34456677777777777663 4667777777777777778777777777777665445554333 334445567778
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---ccHHHHHHHHHHhhccCCHHHHHHHH
Q 011652 217 PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR---PTSFIYSVLVHTYGVENRIEDAVDTF 293 (480)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (480)
++|++.-++..+.+. .|...-.++...+-..|++.++.+...+-...--. .-.+.|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 888877777766542 25555666666777777777777776655432110 01111222233344557778888887
Q ss_pred HH
Q 011652 294 LE 295 (480)
Q Consensus 294 ~~ 295 (480)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 75
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.7 Score=43.22 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=64.9
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 011652 244 VLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKN 323 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 323 (480)
.+.+.|++++|...|-+-...- .|+ .++.-|.......+-..+++.+.+.|+. +...-..|+.+|.+.++.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 3345566666655555444321 121 2333444444555555555666655554 33344455566666666655
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 324 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 400 (480)
..+..+... .|.. ..-....+..+.+.+-.++|..+-.... .+......++ -..|++++|.+.+..+
T Consensus 450 L~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~----~he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK----KHEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc----cCHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 555444333 1111 1123344445555555555554443322 1233333322 2345666666666544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.32 Score=41.46 Aligned_cols=95 Identities=20% Similarity=0.275 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEA---DADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-FIP-SMHTFSVLIN 417 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~ 417 (480)
|+..+.. .+.|++..|...|....++.|. .+..+--|..++...|+++.|..+|..+.+.- -.| -+..+.-+..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444443 3445566666666666653322 22334445566666666666666666555431 111 1244555555
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 011652 418 GLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 556666666666666666543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.97 Score=41.94 Aligned_cols=80 Identities=6% Similarity=0.095 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
.+|.++-++..+..+.|+.....+..+....++++.|...|++....+.. ...+|......+...|+.++|.+.+++..
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444555555555555555555555555555566666666665554311 23344444444455566666666666544
Q ss_pred H
Q 011652 437 E 437 (480)
Q Consensus 437 ~ 437 (480)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 3
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.4 Score=37.36 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=7.2
Q ss_pred HHHhcCCHHHHHHHHHHh
Q 011652 244 VLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~ 261 (480)
++.+.++++.|+..+++.
T Consensus 80 A~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 80 AYYKNGEYDLALAYIDRF 97 (254)
T ss_pred HHHhcccHHHHHHHHHHH
Confidence 333344444444444433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.85 Score=34.13 Aligned_cols=136 Identities=13% Similarity=0.218 Sum_probs=77.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh---HHHHHHHHHhCCChHH
Q 011652 282 VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT---CNIILNGLIGRGETDE 358 (480)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~ 358 (480)
-.|..++..++..+.... .+..-+|.+|--....-+-+-..++++.+-. ..|... ...++.+++..|
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n---- 83 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRN---- 83 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhc----
Confidence 357777777777777664 3566677766555554444444444444432 233322 223333333332
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 359 AYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 359 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.+.......+..+...|+-++-.++++.+... -.+++.....+..+|.+.|+..++.+++.++-+.
T Consensus 84 -------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 84 -------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred -------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 23344455667778888888888888887653 3467788888888888888888888888888887
Q ss_pred CCC
Q 011652 439 GIR 441 (480)
Q Consensus 439 ~~~ 441 (480)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.26 E-value=2.9 Score=39.97 Aligned_cols=186 Identities=9% Similarity=-0.052 Sum_probs=97.4
Q ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011652 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
+..+|..-+..-...|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+-..+-.+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4456666666667777777777777766431 111122333333333444777777766665554322212211111112
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----HH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF---KVWKYMKLKRFIPSMHTFSVLING-----LC 420 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~~-----~~ 420 (480)
-+-..|+.+.|..+++.+.+..+.....-..-+....+.|+.+.+. .++........ +......+.-- +.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHH
Confidence 2334578888888888887755333333334455556677777666 33333322111 22222222221 22
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011652 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
-.++.+.|..++.++.+. +.++...|..++..+...+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 346777788888777764 4556666667766665544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.32 Score=42.18 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK-----YGVTQNLAAFNGLL 173 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll 173 (480)
++..++..+...|+++.+.+.++++....+-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4445555566666666666666666666666666666666666666666666666655543 35555555554444
Q ss_pred HH
Q 011652 174 SA 175 (480)
Q Consensus 174 ~~ 175 (480)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.9 Score=37.44 Aligned_cols=167 Identities=14% Similarity=0.025 Sum_probs=105.3
Q ss_pred chhHHHHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011652 47 KVVLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMR 124 (480)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 124 (480)
.+++..-+.+.+-......+....... ..++ .|..+|..+....+ -+...-..++..|...|+++.|..++..+.
T Consensus 119 esqlr~~ld~~~~~~~e~~~~~~~~~~-~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 119 ESQLRQFLDKVLPAEEEEALAEAKELI-EAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhhhh-hccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 345555555544333333333333333 3333 78888877765543 356677788999999999999999999987
Q ss_pred hCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc--CCCCChh
Q 011652 125 TKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD--RFIPDSK 201 (480)
Q Consensus 125 ~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 201 (480)
.... ........-|..+.+.....+..++-..+-.. +-|...-..+...+...|+.+.|.+.+-.+.. ....|..
T Consensus 196 ~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~ 273 (304)
T COG3118 196 LQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGE 273 (304)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcH
Confidence 6654 22222334455566666665555555555442 44777777888889999999999887776655 3334556
Q ss_pred hHHHHHHHhhcCCChhH
Q 011652 202 TYSILLEGWGKDPNLPR 218 (480)
Q Consensus 202 ~~~~l~~~~~~~~~~~~ 218 (480)
.-..++..+.-.|.-+.
T Consensus 274 ~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 274 ARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHHHhcCCCCH
Confidence 66667766666554433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.1 Score=30.80 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
+..+...|.+.|++++|.++++++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.2 Score=34.49 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=37.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
++..+...+.......+++.+...+. .+....+.++..|++.+ ..+....+.. ..+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444455555555555554442 34445555555555432 2222222221 1133334445555555555
Q ss_pred hHHHHHHHHHH
Q 011652 356 TDEAYRVFRRM 366 (480)
Q Consensus 356 ~~~a~~~~~~~ 366 (480)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.07 E-value=2.8 Score=38.60 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 409 MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP---SGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
..+|..++..+.+.|.++.|...+.++...+... .+.....-++.+...|+..+|...++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555666666666666655555422111 223333344555555666666555555444
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.1 Score=34.43 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHhCCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLCE---ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+.|++++|.+.|+.+....+ -....--.++.+|.+.+++++|...+++.++........-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 4456677777777777666333 2334555666777777777777777777766542222233444444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.2 Score=39.15 Aligned_cols=156 Identities=7% Similarity=-0.155 Sum_probs=109.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHccCCh
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY---GVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
.+.-.|+..+|-..++++.+..|.+.-++.-.=.+|.-.|+.+.-...++++... ++|-...+...+.-++..+|-+
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3455788888888889988888777777777788888899988888888887654 2222233333444456678999
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT---GCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
++|++.-++..+-.+.|.-.-.++...+--+|++.++.++..+-... +--.-..-|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999999888866777777788888888899999988876654321 000011112223335566789999999987
Q ss_pred Hh
Q 011652 260 SM 261 (480)
Q Consensus 260 ~~ 261 (480)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 54
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.7 Score=37.30 Aligned_cols=128 Identities=14% Similarity=0.277 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc--cC----ChhhHHHHHHHhhcCC----CCChhhHHHHHHHhhcCCC-
Q 011652 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK--SK----NVRKAQEIFDCMKDRF----IPDSKTYSILLEGWGKDPN- 215 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~- 215 (480)
+++.+.+++.|.+.|+..+..+|-+....... .. ...+|..+|+.|++.. .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888887776654433333 22 2556888888887732 2334445555443 2333
Q ss_pred ---hhHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCccHHHHHHH
Q 011652 216 ---LPRAREIFREMVDTGCNPDIVT--YGIMVDVLCKAGR--VDEALGIVKSMDSTVCRPTSFIYSVL 276 (480)
Q Consensus 216 ---~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (480)
.+.+..+|+.+.+.|+..+... ...++..+..... ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 3456667777777666544321 2222222111111 33566666666666666665555444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.2 Score=36.04 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=42.9
Q ss_pred HHhCCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLCEA-DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
+...++.+.+...+.......+. ....+..+...+...+.++.|...+......... ....+..+...+...+..+++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHH
Confidence 34445555555555555543333 3455555555555555556666655555543211 123333333333344556666
Q ss_pred HHHHHHHHH
Q 011652 429 CVLLEDMIE 437 (480)
Q Consensus 429 ~~~~~~~~~ 437 (480)
...+.+...
T Consensus 256 ~~~~~~~~~ 264 (291)
T COG0457 256 LEALEKALE 264 (291)
T ss_pred HHHHHHHHH
Confidence 666665554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.74 Score=39.36 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=77.8
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhc-----CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011652 186 QEIFDCMKDRFIPDSKTYSILLEGWGK-----DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260 (480)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (480)
++.|.... ....+..+|-..+..+.. .+.++-....++.|.+-|++.|..+|+.|++.+-+..-.- ..+|+.
T Consensus 54 e~~F~aa~-~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~ 130 (406)
T KOG3941|consen 54 EKQFEAAE-PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQK 130 (406)
T ss_pred hhhhhccC-cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHH
Confidence 34444443 223466677777776643 4556667777888888888888888888888765432111 011111
Q ss_pred hhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHH
Q 011652 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF-KNVYRVLKDM 331 (480)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~ 331 (480)
. .-.| -.+-+-+++++++|...|+.||..+-..++.++.+.+.. .+..++.-.|
T Consensus 131 ~---------------F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 V---------------FLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred H---------------HhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 1 1111 123345788899999999999999888888888877653 3334444334
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.67 E-value=3 Score=37.08 Aligned_cols=127 Identities=9% Similarity=0.207 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--c----CCHhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhCCCh-
Q 011652 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCK--A----NKFKNVYRVLKDMNSKGV---APNSRTCNIILNGLIGRGET- 356 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~- 356 (480)
++...+++.+.+.|..-+..+|-+....... . ....++..+++.|.+..+ .++...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566667777766665555443322222 1 124566677777766532 2233344444332 22222
Q ss_pred ---HHHHHHHHHHHh-cCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011652 357 ---DEAYRVFRRMIK-LCEADA--DTYTMMIKMFCQGGE--LEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 357 ---~~a~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l 415 (480)
+.++.+++.+.+ +...+. .....++........ ..++.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 334455555555 333222 222222222211111 33555666666666666555554443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.62 E-value=4 Score=38.30 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
..-..+..++.+.|+.++|.+.++++.+..+. +..+...|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33344556666777777777777777764333 334566677777777777777777777543
|
The molecular function of this protein is uncertain. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.8 Score=33.99 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=24.2
Q ss_pred hCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
+.++.+++..++..+.-.-|.....-..-...+.+.|++.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555554422222222222233445555666666666655443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.3 Score=33.02 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=71.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcC
Q 011652 382 KMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET---FGKLRKLLIKEG 458 (480)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g 458 (480)
-+....|+.+.|++.|.+....-. -+...||.-..++.-.|+.++|+.-+++.++..-.-.... |..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 456788999999999999887642 3778999999999999999999999999987532222222 333344566789
Q ss_pred CHHHHHHHHHHHHhhhC
Q 011652 459 REDVLKFLQEKMNLLVK 475 (480)
Q Consensus 459 ~~~~a~~~~~~~~~l~~ 475 (480)
+.+.|+.=|+...+++.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999998888777653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=2.6 Score=35.57 Aligned_cols=225 Identities=15% Similarity=0.088 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 011652 249 GRVDEALGIVKSMDSTVCR-PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN-GILADVAMYNALIGAFCKANKFKNVYR 326 (480)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~ 326 (480)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555443211 13455666677777778888777777776542 223345556666667777777888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHH-HHHhCCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 327 VLKDMNSKGVAPNSRTCNIILN-GLIGRGETDEAYRVFRRMIKLCE---ADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 327 ~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
.+.........+ ......... .+...|+.+.|...+.......+ .....+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888877754333 122222223 67888999999999998866222 2334445555557788999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 403 KRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 403 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.........+..+...+...++++.|...+......... ....+......+...|..+.+...+.+..+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 542213677888888899999999999999999874322 244455555555577789999988887766543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.72 Score=40.04 Aligned_cols=60 Identities=20% Similarity=0.392 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
++..++..+...|+.+.+...++++....+-+...|..++.+|.+.|+...|...|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444445555555555555555555445555555555555555555555555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.27 E-value=3.6 Score=36.75 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=22.6
Q ss_pred HHHHhCCChHHHHHHHHHHHh--cCCC----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 348 NGLIGRGETDEAYRVFRRMIK--LCEA----DADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 398 (480)
.+....+.++++++.|+.+.+ .... ...++..|...|.+..++++|.-+..
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence 334444445555555554443 1111 12344455555555555555544433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.097 Score=29.27 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 447 FGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
+..+...|.+.|++++|.+++++...+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555554433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.11 E-value=3.3 Score=37.01 Aligned_cols=200 Identities=13% Similarity=0.109 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCC---CH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAM----RTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY-GVTQ---NL 166 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~ 166 (480)
..+|..+..+..+.|.+++++..--.- .+..- .--.+|..+.+++-+..++.+++.+-..-... |..| .-
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 346667777888888887765532221 11111 22345666677777777777777766554432 2222 12
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhc----CCC--CChhhHHHHHHHhhcCCChhHHHHHHHHHHH----cCCCCCh-
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKD----RFI--PDSKTYSILLEGWGKDPNLPRAREIFREMVD----TGCNPDI- 235 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~- 235 (480)
.....+..++...+.++++++.|+.... ... ....+|..|...|.+..++++|.-+..+..+ .++. |.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~ 201 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWS 201 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chh
Confidence 3344566677777888999988888765 111 1345788888999999999988877666542 1222 21
Q ss_pred hhHHH-----HHHHHHhcCCHHHHHHHHHHhhh----CCCCc-cHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011652 236 VTYGI-----MVDVLCKAGRVDEALGIVKSMDS----TVCRP-TSFIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 236 ~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
.-|.. |.-++...|....|.+.-++..+ .|-.+ -......+.+.|...|+.+.|..-|++..
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 11222 23345566777777766665533 33222 23344567788888999998888877753
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.50 E-value=2.2 Score=37.27 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=50.2
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011652 336 VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL----CEA--DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM 409 (480)
Q Consensus 336 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 409 (480)
......+...++..-....+++.++..+-.+... ..+ +..+| ++.+.+ -++++++.++..=+..|+-||.
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3334444555554444455566666555555431 111 11222 222222 2455666665555566666666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 410 HTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.++..++..+.+.+++.+|..+.-.|+.
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666666555553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.50 E-value=3.4 Score=33.48 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCCH----H
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY---GVTQNL----A 167 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----~ 167 (480)
..+..+.+.|.+.|+.+.|.+.|.++..... .-...+-.+|+.....+++..+...+.+.... |-+.+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5677888888889999999999988877654 34556777888888888888888887666442 211111 1
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 168 AFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
+|..+ .+...+++..|-+.|-....
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccCc
Confidence 22222 22345777777777766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.27 E-value=8.1 Score=38.08 Aligned_cols=182 Identities=14% Similarity=0.077 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHH---hhccCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcC-
Q 011652 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHT---YGVENRIEDAVDTFLEMEK-------NGILADVAMYNALIGAFCKAN- 319 (480)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~- 319 (480)
...+.++++...+.|. .........+.. +....+.+.|...++...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567777777776652 222222222222 3355677788888777765 33 2223445555555532
Q ss_pred ----CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--hcCCHHH
Q 011652 320 ----KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG-RGETDEAYRVFRRMIKLCEADADTYTMMIKMFC--QGGELEK 392 (480)
Q Consensus 320 ----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~ 392 (480)
+.+.|..++....+.|.+ +.......+..... ..+...|.++|..+.+...+....+..++.... ...+...
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 455567777666665433 32222222111111 134566777776666533333222222221111 2345666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
|..++++..+.| .|...--...+..+.. ++.+.+.-.+..+.+.|
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 777777666665 2221222222223333 55555555555555544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.5 Score=33.00 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011652 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
++.+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+.++.+...+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 44445555555566666666666666666666666666666666543322333444433
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.8 Score=35.06 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLC---EADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
.+..+...|.+.|+.+.|.+.+.++.... ..-...+-.+++.....+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566666667777777777777666521 12223445566666666677666666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.13 E-value=3.2 Score=32.03 Aligned_cols=18 Identities=44% Similarity=0.813 Sum_probs=9.2
Q ss_pred HhCCChHHHHHHHHHHHh
Q 011652 351 IGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~ 368 (480)
...|++++|.++|+++.+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 444555555555555444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.47 Score=33.51 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++.+..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455555666666677777777777777777777777777777776644333335555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.89 Score=31.81 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011652 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
-++.+-++.+...++.|++....+.+++|.+.+++..|.++|+.+...+..+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 345555566666666677777777777777777777777777766643333334444433
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.16 Score=27.95 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=14.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 365 RMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
+.++..|.++..|..+...|...|++++|
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 33333444555555555555555555554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.0053 Score=48.04 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=47.2
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++ . .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~----~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---T----SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---S----SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---c----ccccCHHHHHHHHHhcch
Confidence 445555666666666677776665545556667777777777766666666555 1 122333445555666666
Q ss_pred hHHHHHHHHH
Q 011652 356 TDEAYRVFRR 365 (480)
Q Consensus 356 ~~~a~~~~~~ 365 (480)
++++..++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6655555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.32 Score=27.14 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888888888888888854
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.17 Score=27.85 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHHhCCHHH
Q 011652 130 NVETFCIIMRKYARVQKVEE 149 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~ 149 (480)
+..+|..+...+...|++++
T Consensus 12 n~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHh
Confidence 33333333333333333333
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.67 E-value=12 Score=37.51 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=48.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CC-----CHHHHHHHHH--HHHhcCChHHHHHHHH--------HHHHcCCCCCHHHHH
Q 011652 385 CQGGELEKAFKVWKYMKLKRF-IP-----SMHTFSVLIN--GLCDKGIVSDSCVLLE--------DMIEKGIRPSGETFG 448 (480)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~~-~p-----~~~~~~~l~~--~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~ 448 (480)
+-.+++..|...+..+..... .| ....+..++. .+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889899999888875311 11 1223333333 3445689999999997 444555555554444
Q ss_pred HH--HHHHHhcCC--HHH--HHHHHHHHHh
Q 011652 449 KL--RKLLIKEGR--EDV--LKFLQEKMNL 472 (480)
Q Consensus 449 ~l--~~~~~~~g~--~~~--a~~~~~~~~~ 472 (480)
.+ +-.+...+. .++ +..+++.+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 32 222222232 222 5666665544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.62 E-value=6.4 Score=34.18 Aligned_cols=58 Identities=7% Similarity=-0.009 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 203 YSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
++...+.|..+|.+.+|.++.++.+... +.+...+-.++..+...|+--.+.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4455667777788888888777776643 336666777777777777766666655555
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=9.3 Score=35.93 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=74.1
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHH-cCCCCCHH
Q 011652 370 CEADADTY-TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC--DKGIVSDSCVLLEDMIE-KGIRPSGE 445 (480)
Q Consensus 370 ~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-~~~~p~~~ 445 (480)
..++..++ +.+++.+.+.|.+.+|.+++..+... .+|+...|..+++.-. .+-+...+..+++.|.. .| .|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChH
Confidence 34444443 56788888999999999999999876 3568888888876422 22337888899999884 46 6788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 446 TFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
.|.-.+..-...|..+.+-.++.+..+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 888887777788998888777666544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=92.49 E-value=4.1 Score=35.42 Aligned_cols=113 Identities=8% Similarity=0.122 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAK--IRQYQIMWDLVNAMRTK--RMLNVETFCIIMRKYARVQKVEEAVYTF 154 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 154 (480)
.|+++|+........-.|..+-..+++.... .......-++.+-+... +.++..+...++..++..+++..-.+++
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW 225 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFW 225 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence 4555665332211222355555555554443 11223333333333332 2256666666666666666666666666
Q ss_pred HHHHhc-CCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 011652 155 NVMQKY-GVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191 (480)
Q Consensus 155 ~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 191 (480)
+..... +...|...|..+|......|+..-..++.+.
T Consensus 226 ~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 226 EQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 655443 4445666666666666666666665555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.45 E-value=9.7 Score=35.89 Aligned_cols=59 Identities=8% Similarity=0.114 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 310 ALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
.+..++-+.|+.++|.+.+++|.+.... -.......|+.++...+.+.++..++.+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444445566666666666666543211 1223445566666666666666666665543
|
The molecular function of this protein is uncertain. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.16 E-value=5 Score=31.88 Aligned_cols=139 Identities=10% Similarity=0.068 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhCCChHHHHHHHHHHHhc-CCCCHH-HHHH-
Q 011652 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR-TCNIILNGLIGRGETDEAYRVFRRMIKL-CEADAD-TYTM- 379 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~~- 379 (480)
+...|...++ +.+.+..++|+.-|.++.+.|...-+. ..-.......+.|+...|...|+++-.. ..|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4455555554 466788899999999998876542111 1112233456788999999999988762 222211 1111
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011652 380 -MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 380 -l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 443 (480)
-...+...|.++....-.+.+...+-+-....-..|.-+-.+.|++..|...|..+......|.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 1233556788888887777766554333444555666677788999999999988876433443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.10 E-value=2.9 Score=29.72 Aligned_cols=59 Identities=14% Similarity=0.279 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011652 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
+..+-++.+...++.|++....+.+++|.+.+++..|.++|+.+...+.+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 45555666666667777777777777777777777777777777664333333554444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.62 Score=25.25 Aligned_cols=29 Identities=17% Similarity=-0.057 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+..+..++...|++++|.+.+++..++.+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 44445555555555555555555555443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.93 E-value=2 Score=41.08 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhc
Q 011652 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK 212 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (480)
..+.++.-+.++|..++|+++ .+|+.. -.....+.|+++.|.++..+.. +..-|..|.++...
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALS 678 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhh
Confidence 344555555566666665544 222221 1223345577777766665554 55567777777777
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHH
Q 011652 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292 (480)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (480)
.+++..|.+.|....+ |..|+-.+...|+-+....+-....+.| .. |...-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHH
Confidence 7777777777665543 3445555556666655555555555544 22 2223345556677666666
Q ss_pred HHHH
Q 011652 293 FLEM 296 (480)
Q Consensus 293 ~~~~ 296 (480)
+..-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 5443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.86 E-value=6 Score=32.16 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=57.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011652 347 LNGLIGRGETDEAYRVFRRMIKLCE---ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKG 423 (480)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (480)
...+...|++++|+..++....... ....+--.|.+.....|.+++|.+.++.....+. .......-...+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 3456677778888777776654111 1112223455666777888888888877665432 2223344456778888
Q ss_pred ChHHHHHHHHHHHHcC
Q 011652 424 IVSDSCVLLEDMIEKG 439 (480)
Q Consensus 424 ~~~~A~~~~~~~~~~~ 439 (480)
+-++|..-|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888887765
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.54 E-value=7 Score=32.35 Aligned_cols=84 Identities=12% Similarity=-0.007 Sum_probs=49.2
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
|-+.-|.--|.+...-.|.-+.+||.+.--+...|+++.|.+.|+...+....-+-...|.-|..| -.|++.-|.+=+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHH
Confidence 333444444444444445556778888888888888888888888887754332222233333222 3577777766655
Q ss_pred HhhhC
Q 011652 260 SMDST 264 (480)
Q Consensus 260 ~~~~~ 264 (480)
..-+.
T Consensus 158 ~fYQ~ 162 (297)
T COG4785 158 AFYQD 162 (297)
T ss_pred HHHhc
Confidence 55444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.82 Score=24.85 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+|..+..+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555666666655555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.68 Score=25.18 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 447 FGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
|..+..++...|++++|...+++..+++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4444444555555555555555544444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.87 E-value=5 Score=35.16 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
++++++.++..=++.|+.||..+++.+|+.+.+.+++.+|..+...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555545555555555555555555555555555555444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.82 E-value=7.1 Score=31.06 Aligned_cols=137 Identities=10% Similarity=0.055 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHH-HHH--
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC--IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLA-AFN-- 170 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-- 170 (480)
+...|..-+. +++.+..++|+.-|..+...|.-+-..+. .........|+...|...|+++-.....|-.. -.-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344444333 34455566666666666655542222221 22233345566666666666664432222211 000
Q ss_pred HHHHHHHccCChhhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCC
Q 011652 171 GLLSALCKSKNVRKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP 233 (480)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (480)
--.-.+...|.++......+-+.. +.+--...-..|.-+-.+.|++..|.+.|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 111234455666666665555544 222223334455555566666666666666665443333
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.97 E-value=24 Score=35.91 Aligned_cols=224 Identities=11% Similarity=0.028 Sum_probs=114.4
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCccHH-------HHHHHH-HHhhccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 011652 246 CKAGRVDEALGIVKSMDSTVCRPTSF-------IYSVLV-HTYGVENRIEDAVDTFLEMEKN----GILADVAMYNALIG 313 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 313 (480)
....++.+|..++.++...-..|+.. .++.+- ......|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44678888888888776543232211 233222 2234567888888877776543 22334556666667
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH-----HHHHhCCCh--HHHHHHHHHHHh----cCC---CCHHHHHH
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL-----NGLIGRGET--DEAYRVFRRMIK----LCE---ADADTYTM 379 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~----~~~---~~~~~~~~ 379 (480)
+..-.|++++|..+..+..+..-.-+...+.... ..+...|+. .+.+..+..... ..+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777889998888877765542222333322222 224455632 233333333333 111 12234455
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHH
Q 011652 380 MIKMFCQG-GELEKAFKVWKYMKLKRFIPSMHTF--SVLINGLCDKGIVSDSCVLLEDMIEKG----IRPSGETFGKLRK 452 (480)
Q Consensus 380 l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~ 452 (480)
++.++.+. +...++..-+.--......|-...+ ..++......|+.++|...+.++.... ..++.......++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555551 1112222222222222222222222 255667777899999998888887532 2333333333333
Q ss_pred HH--HhcCCHHHHHHHHHH
Q 011652 453 LL--IKEGREDVLKFLQEK 469 (480)
Q Consensus 453 ~~--~~~g~~~~a~~~~~~ 469 (480)
.. ...|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 32 346777777666655
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.63 E-value=11 Score=31.60 Aligned_cols=53 Identities=9% Similarity=0.081 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHHh---cCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011652 354 GETDEAYRVFRRMIK---LCEADAD---TYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~---~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 406 (480)
.+++.|+..++..-+ +...+.. .+--....-...+++.+|.++|+++....+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455566666655554 2122221 2222333344567788888888877765443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.42 E-value=1.1 Score=24.24 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445555566666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.32 E-value=9.2 Score=30.11 Aligned_cols=53 Identities=11% Similarity=-0.058 Sum_probs=28.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
.+.++.+++..+++.+.-..|-....-..-...+...|++.+|+.+|+.+...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 44556666666666666555422222222333445566666666666665543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.24 E-value=9.8 Score=30.33 Aligned_cols=32 Identities=16% Similarity=0.380 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011652 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
+++.+.+.+++|+...+..+++.+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34444455556666666666666666665444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.14 E-value=7 Score=31.78 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFS-----VLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
.+...+...|++++|..-++..... |....+. .|.+.....|.+++|+..+....+.+.. ......-.+.
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDi 168 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDI 168 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhH
Confidence 4567788899999999999987754 2333333 3456678899999999999877654432 3334445688
Q ss_pred HHhcCCHHHHHHHHHHHHhhhC
Q 011652 454 LIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+...|+.++|+.-|++..+...
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccC
Confidence 9999999999999998877643
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.10 E-value=48 Score=38.08 Aligned_cols=62 Identities=15% Similarity=-0.064 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 410 HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.+|....+.....|.++.|...+-.+.+.+ . +..+...++.+...|+...|..++++..+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 456666666666666666666655555443 1 2334445566666666666666666655443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.09 E-value=10 Score=30.27 Aligned_cols=101 Identities=20% Similarity=0.301 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC
Q 011652 152 YTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (480)
+.+..+.+.+++|+...+..++..+.+.|++.....++.- +.-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~---~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY---HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh---cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 3444555566777777777777777777765544443322 22333333332222221 2223344443333321
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
=...+..+++.+...|++-+|+++....
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012445556666667777777666654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.97 E-value=2.7 Score=34.69 Aligned_cols=55 Identities=13% Similarity=0.063 Sum_probs=26.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
.++.+.+.+..++++...+.-.+.+|.+...-..++..++-.|++++|..-++..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444445555555555555544444444444444555555555555554444433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.96 E-value=4.9 Score=32.92 Aligned_cols=70 Identities=6% Similarity=0.111 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK----LCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+ +..+|+..+..|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555544433333333333333333 4555566655555554 2245555566666666655555554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.89 E-value=28 Score=35.08 Aligned_cols=117 Identities=11% Similarity=0.084 Sum_probs=69.5
Q ss_pred cCCHhHHHHHHHHHHhCC-CCCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 318 ANKFKNVYRVLKDMNSKG-VAPNS--RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 394 (480)
..+.+.|...+....... ..+.. .....+.......+..+++...++..... ..+......-++.-.+.++++.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~-~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR-SQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc-cCCcHHHHHHHHHHHHccCHHHHH
Confidence 445688888888765442 22221 22333333333333355666666654432 234445555566666888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
..+..|....- -...-.--+.+++...|+.++|..+|+++.
T Consensus 333 ~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888754321 133334446677677899999999988874
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.58 E-value=5.3 Score=32.73 Aligned_cols=71 Identities=8% Similarity=0.055 Sum_probs=31.9
Q ss_pred hhHHHHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 183 RKAQEIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT---GCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 183 ~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
+.|.+.|-.+.. +.-.++.....|...|. ..+.+++..++.+..+. +-.+|...+..|++.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444443 22223333333333333 44455555555544422 1234555555555555555555554
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.03 E-value=20 Score=32.47 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhc---CCChhHHHHHH
Q 011652 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK---DPNLPRAREIF 223 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 223 (480)
.+.-+.++++..+.+ +.+...+..+|..+.+..+.++..+.++++....+-+...|...+..... .-.++....+|
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 344556666666653 45556666667777766666666677777666555566666666655443 22344555555
Q ss_pred HHH
Q 011652 224 REM 226 (480)
Q Consensus 224 ~~~ 226 (480)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.7 Score=24.77 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.40 E-value=11 Score=30.87 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=72.9
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADA-----DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
.-+...|++++|..-|..+...+++.. ..|..-.-++.+.+.++.|+.-..+.++.+.. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 347789999999999999999777654 35666667788899999999998888887632 333444445678888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH
Q 011652 423 GIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 423 g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
..+++|+.-|+.+++. .|...
T Consensus 182 ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHh--CcchH
Confidence 9999999999999885 35544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.39 E-value=1.8 Score=24.74 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+++.+...|...|++++|..++++..++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 4566677777777777777777777766544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.37 E-value=10 Score=31.03 Aligned_cols=92 Identities=11% Similarity=0.069 Sum_probs=71.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG 388 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 388 (480)
.-+.+.|++++|..-|...++.-.... ...|..-..++.+.+.++.|+.-....++..+........-..+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 457889999999999999998632211 2234444567788899999988888887766666666666678899999
Q ss_pred CHHHHHHHHHHHHhCC
Q 011652 389 ELEKAFKVWKYMKLKR 404 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~ 404 (480)
.+++|+.-|+.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999875
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.92 E-value=2.5 Score=22.82 Aligned_cols=30 Identities=20% Similarity=0.042 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 446 TFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+|..+...+...|++++|.+.+++..++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555666666666666666666666554
|
... |
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.85 E-value=20 Score=31.19 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMR 124 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~ 124 (480)
...+..+...|++-++.+.+.++.++..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3444555555555555555555444433
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.51 E-value=6.4 Score=32.61 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh---cCCCCHHHHHHHHHH
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEADADTYTMMIKM 383 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~ 383 (480)
.+..++.+.+.+...+++...++-++..+. |...-..+++.++-.|++++|..-++.... ...+...+|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344455566666666666666655554222 444555566666677777777665555544 333444555555543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.48 E-value=22 Score=31.17 Aligned_cols=64 Identities=8% Similarity=0.160 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
..++..+...++..++..+++.+-.++|..-... +..-|...|..++......|+..-..++..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4556666666667777777777777766655543 334466667777777777776655444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.32 E-value=12 Score=36.10 Aligned_cols=130 Identities=13% Similarity=0.099 Sum_probs=75.8
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011652 273 YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG 352 (480)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 352 (480)
-+.++..+.+.|-.++|+++- +|...- .....+.|+.+.|.++..+.. +..-|..|..+...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 344555555666555555432 222111 123345677777776665543 45567777777777
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011652 353 RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLL 432 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 432 (480)
.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |....+|...|+++++.+++
T Consensus 679 ~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 679 AGELPLASECFLRARD--------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred cccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHH
Confidence 7888877777776543 556666666677766555555555555422 22334556667777777766
Q ss_pred HH
Q 011652 433 ED 434 (480)
Q Consensus 433 ~~ 434 (480)
.+
T Consensus 745 i~ 746 (794)
T KOG0276|consen 745 IS 746 (794)
T ss_pred Hh
Confidence 54
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.14 E-value=20 Score=30.38 Aligned_cols=118 Identities=10% Similarity=0.008 Sum_probs=67.3
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 315 FCKANKFKNVYRVLKDMNSKGVAPNS-RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
|.....++.|...+.+.... .|+. .-|..=+.++.+..+++.+..--++..+..+..+.....+..++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 44455677777766666654 4444 33444555566677777777666666654444444555566666677777777
Q ss_pred HHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 394 FKVWKYMKL----KRFIPSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 394 ~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
...+.+..+ ..++|-...+..|..+--..=...+..++.++
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 777776632 33444445555555543333334444444444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.08 E-value=72 Score=36.81 Aligned_cols=151 Identities=8% Similarity=0.041 Sum_probs=98.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 102 SMIESLAKIRQYQIMWDLVNAMRTKRM---LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 102 ~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.+..+-.+++.+..|...+++-..... .....+..+...|+..+++|...-+...-.. .|+ .+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHh
Confidence 344566788899999999988422111 2233344555589999999888777664111 222 222 3445677
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCHHHHHHH
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGI-MVDVLCKAGRVDEALGI 257 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~ 257 (480)
.|++..|...|+++.+..++....++.++......|.++.+.-..+-.... ..+....++. =+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999999877777888998888888888888877766555433 1222233332 23344566777776666
Q ss_pred HH
Q 011652 258 VK 259 (480)
Q Consensus 258 ~~ 259 (480)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 55
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.83 E-value=41 Score=33.78 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=39.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH---
Q 011652 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILADVAMYNALIGAFCK--- 317 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 317 (480)
...+.-.|.++.|.+.+-. ..+...+..++...+..|.-.+-.+... ..+.... -.|..--+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455667899999888876 2223455555555555554333222211 2221110 01112456777777776
Q ss_pred cCCHhHHHHHHHHHHhC
Q 011652 318 ANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~ 334 (480)
..+..+|.+.+--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35677777777666553
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.76 E-value=4.3 Score=30.11 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHH
Q 011652 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSIL 206 (480)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 206 (480)
..+-++.+...++.|++.+-...++++.+.+|+..|.++|+-++.+..+....|..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 344455555566677777777777777777777777777777665444433344443
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.49 E-value=37 Score=35.13 Aligned_cols=38 Identities=8% Similarity=0.102 Sum_probs=20.7
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
|......+.+..+++.+....-.++....+.++..|..
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 34455556666666666544444455555555555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.46 E-value=0.39 Score=37.42 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=26.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 011652 138 MRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFD 190 (480)
Q Consensus 138 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 190 (480)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544434445555555555555555455544444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.30 E-value=5.8 Score=35.22 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=28.3
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMI 367 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 367 (480)
.-|.+.|.+++|+.++...... .| +.+++..-..+|.+...+..|+.-...+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455566666666666555443 23 45555555555555555555554444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.23 E-value=16 Score=28.40 Aligned_cols=52 Identities=12% Similarity=-0.084 Sum_probs=25.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
..++++++..+++.|.-..|.....-..-...+...|++++|..+|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3556666666666665544422222222223344556666666666665554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.23 E-value=21 Score=29.78 Aligned_cols=63 Identities=16% Similarity=-0.047 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 166 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
+.+||.|.--+...|+++.|.+.|+...+-.+....+...-.-++.--|+++-|.+-+...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 445555555555566666666666665553222222222222223334556666555555443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.78 E-value=8.2 Score=33.54 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhh
Q 011652 133 TFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMK 193 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 193 (480)
+++...+.|..+|.+.+|.++.+.....+ +.+...+..++..++..||--.|.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34555566667777777777777666654 4556666666777777777555555555553
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.59 E-value=12 Score=30.02 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 370 CEADADTYTMMIKMFCQGG----E-------LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.|....++..+..+|...+ + +++|...|++..+. .|+..+|+.-+... ++|-++..++.+.
T Consensus 65 ~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 65 NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 3444456666666555432 2 33333333333332 35666665555443 2345555555444
Q ss_pred C
Q 011652 439 G 439 (480)
Q Consensus 439 ~ 439 (480)
+
T Consensus 137 ~ 137 (186)
T PF06552_consen 137 G 137 (186)
T ss_dssp S
T ss_pred H
Confidence 3
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.58 E-value=32 Score=31.49 Aligned_cols=66 Identities=3% Similarity=-0.027 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA---DVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
....++..++..+.+.|.++.|...+..+...+... .+...-.-++..-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777788888888888888888877643111 233334445556667888888888877766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.35 E-value=39 Score=32.22 Aligned_cols=182 Identities=13% Similarity=0.116 Sum_probs=103.6
Q ss_pred CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHH
Q 011652 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275 (480)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 275 (480)
.+.|....-+++..+..+..+.-+..+..+|..-| -+-..|..++.+|... ..++-..+++++.+..+ .+...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 34566666777777777777777777777777643 3556677777777776 44666777777766542 23333333
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCChhhHHHHHHH
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGILAD-----VAMYNALIGAFCKANKFKNVYRVLKDMNSK-GVAPNSRTCNIILNG 349 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 349 (480)
|...|.+ ++...+...|.++...=++.. ...|.-+.... ..+.+....+..++... |...-...+..+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4444433 666777777766654322100 11233333211 23455555555555543 333333444445555
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
|....++.+|++++..+.+....|...-..++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 66667777777777777665555555555555544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.15 E-value=40 Score=32.17 Aligned_cols=95 Identities=9% Similarity=0.027 Sum_probs=41.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011652 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 313 (480)
|.....+++..+..+..+.-+.-+..+|...| .+...+..++.+|... ..++-..+++++.+..+. |...-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34444444555554444444444555544432 2344444455555444 334444455544443222 2222233333
Q ss_pred HHHHcCCHhHHHHHHHHHHh
Q 011652 314 AFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~ 333 (480)
.|-+ ++.+.+...|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3322 444444444444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.05 E-value=3.8 Score=36.30 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=64.3
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (480)
+.|.++|.+++|+.+|.......+.|++++..-..+|.+...+..|+.-.......+-. -...|..-+.+-...|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHHH
Confidence 34889999999999999988877779999999999999999998888777666553210 11233333333333455555
Q ss_pred HHHHHHHHHHcCCCCCHH
Q 011652 428 SCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 428 A~~~~~~~~~~~~~p~~~ 445 (480)
|.+-++..++ +.|+..
T Consensus 184 AKkD~E~vL~--LEP~~~ 199 (536)
T KOG4648|consen 184 AKKDCETVLA--LEPKNI 199 (536)
T ss_pred HHHhHHHHHh--hCcccH
Confidence 5555555554 456643
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.90 E-value=27 Score=30.08 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChhhHHHHHHHhhc------CCCCChhhHHHHHHHhhcCCC
Q 011652 145 QKVEEAVYTFNVMQKYGVTQN---LAAFNGLLSALCKSKNVRKAQEIFDCMKD------RFIPDSKTYSILLEGWGKDPN 215 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 215 (480)
..+++|+.-|++..+...... ..+...++..+.+.+++++....+.++.. ...-+..+.|.++.......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456677777766655321221 23344456666667777766666666543 112234445555555555555
Q ss_pred hhHHHHHHHHHHHc-CCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011652 216 LPRAREIFREMVDT-GCNPDIV----TYGIMVDVLCKAGRVDEALGIVKSMDS 263 (480)
Q Consensus 216 ~~~a~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (480)
.+-...+|+.-.+. .-..+.. |-..+...|...|.+.+..+++.++..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 55444444432211 0001111 223345555555666666666655543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.29 E-value=42 Score=31.80 Aligned_cols=106 Identities=8% Similarity=-0.060 Sum_probs=67.0
Q ss_pred HHhCCChHHHHHHHHHHHh----cCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCH----
Q 011652 350 LIGRGETDEAYRVFRRMIK----LCEAD-----ADTYTMMIKMFCQGGELEKAFKVWKYMKL-------KRFIPSM---- 409 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~----~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~---- 409 (480)
+.-.|++..|.+++...-- +...+ -..||.|...+.+.|.+..+..+|.+..+ .|+.|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4456777777777654322 21112 12345555566666777766666666553 3544421
Q ss_pred -------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011652 410 -------HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKE 457 (480)
Q Consensus 410 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 457 (480)
.+|+ ..-.|.+.|++-.|.++|.+.... +.-++..|..+..+|...
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 2333 344678889999999999988764 567889999999888753
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.64 E-value=4.4 Score=21.78 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777888888888777765
|
... |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.93 E-value=11 Score=28.17 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHH
Q 011652 324 VYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTM 379 (480)
Q Consensus 324 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (480)
..+.++.+..-++.|++......+++|.+.+++..|.++|+-+...+.+....|-.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 44455555566677777777777777777777777777777766544444444443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.93 E-value=35 Score=29.72 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh----hhCCCCccH
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSM----DSTVCRPTS 270 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~ 270 (480)
..++..+.+.|.+.+|+.+...+ .+.+-+++.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 45677888999999998876544 444444443
|
|
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=80.93 E-value=12 Score=25.82 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhH
Q 011652 116 MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185 (480)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (480)
+.++++.+.++++.+......+-.+-...|+.+.|.+++..+. +| | ..|...+.++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 3455666666666555555544444445566777777777666 43 2 3355566666666554443
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.91 E-value=39 Score=29.87 Aligned_cols=232 Identities=10% Similarity=-0.008 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCH----HHHHHHHHHHHhcCCCCCHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV----EEAVYTFNVMQKYGVTQNLAAFN 170 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 170 (480)
++..+....+..+...|..+ +...+..+... .++..-...+.+++..|+. +++...+..+... .++..+-.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS--KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 35555555555565555432 22333333222 2444455556666666652 3455555555322 45555555
Q ss_pred HHHHHHHccCCh-----hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011652 171 GLLSALCKSKNV-----RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245 (480)
Q Consensus 171 ~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (480)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. +|...-...+.++
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~--D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aL 183 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF--DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh--CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 555555444321 122222222211 2244444555555555554 3444555444432 2333333333444
Q ss_pred HhcC-CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011652 246 CKAG-RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 246 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
.+.+ +...+...+..+.. .++..+-...+.++++.|+. .+...+-...+.+ + .....+.++...|+. +|
T Consensus 184 g~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hH
Confidence 4332 12334444444442 33445555555566665553 3444443333332 1 123444555555553 45
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH
Q 011652 325 YRVLKDMNSKGVAPNSRTCNIILNG 349 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~ 349 (480)
...+..+.+. .||..+-...+.+
T Consensus 254 ~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 254 LPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHHHHHhh--CCChhHHHHHHHH
Confidence 5555555543 2344444433333
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=80.85 E-value=63 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011652 93 YEHSVRAYHSMIESLAKIRQYQIMWDLVNA 122 (480)
Q Consensus 93 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 122 (480)
...++.-|+ .+..+.-.|.++.|.+++..
T Consensus 145 ~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 145 YEHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp CSGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred CccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 334477777 57777778899999999854
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.75 E-value=4.5 Score=23.79 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=11.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.43 E-value=45 Score=30.25 Aligned_cols=117 Identities=16% Similarity=0.073 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHH
Q 011652 358 EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD---KGIVSDSCVLLED 434 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 434 (480)
.-+.+++++.+..+.+...+..++..+.+..+.++..+-|+++...... +...|...+..... .-.++....+|.+
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3344555555544555555555555555555555555556655554321 44555555544332 1234444444443
Q ss_pred HHHc------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 435 MIEK------GI------RPS-----GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 435 ~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.++. +. .++ ..++..+...+..+|..+.|..+++-+.++..
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3311 10 000 11223333444567778888888877777653
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.37 E-value=4.5 Score=23.77 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 414 VLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888999999999998888654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.08 E-value=36 Score=28.84 Aligned_cols=23 Identities=4% Similarity=0.134 Sum_probs=17.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 011652 346 ILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
+...-...+++.+|.++|+++..
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567889999999999877
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.05 E-value=30 Score=30.08 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=9.2
Q ss_pred HHHhhccCCHHHHHHHHHHHH
Q 011652 277 VHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~ 297 (480)
|-.|.+.|++..+.++-....
T Consensus 125 ILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 334444444444444444433
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 1e-16
Identities = 16/206 (7%), Positives = 58/206 (28%), Gaps = 5/206 (2%)
Query: 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDC 191
E ++++ ++ + ++ + + A +
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 192 MKD----RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK 247
R + Y+ ++ GW + + + D G PD+++Y + + +
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 248 AGRVDEALG-IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA 306
+ + ++ M + + +VL+ ++ L
Sbjct: 213 QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV 272
Query: 307 MYNALIGAFCKANKFKNVYRVLKDMN 332
+ L+ + + ++ +
Sbjct: 273 NTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.9 bits (164), Expect = 4e-12
Identities = 26/218 (11%), Positives = 60/218 (27%), Gaps = 34/218 (15%)
Query: 183 RKAQEIFDCMKDRFI-PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241
+ A + DC + P + + LL+ +L + + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
++ A ++ +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHG--------------------------------QRQKRK 161
Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAY- 360
L + MYNA++ + + FK + VL + G+ P+ + L + + +
Sbjct: 162 LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
Query: 361 RVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
R +M + +T ++ + KA K
Sbjct: 222 RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 1e-09
Identities = 45/390 (11%), Positives = 110/390 (28%), Gaps = 48/390 (12%)
Query: 3 KVYHSRNKMISGCISFLRRYNSSEPSTEALDAAKSISKIMLSSPKVVLDTALDQSGIRVS 62
+ R + + + + + T L + ++ L+ Q+
Sbjct: 35 RTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGC---LEDCTRQAPESPW 91
Query: 63 PEIVEDVLEKFRNAGTLAFC-FFKWAEKQQNYEHSVRAYHSMIESLAKIRQ----YQIMW 117
E + +L++ +L Q + + + Q + ++
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 118 DLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177
+ +++L ++ + +M +AR +E VY +++ G+T
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-------------- 197
Query: 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK-DPNLPRAREIFREMVDTGCNPDIV 236
PD +Y+ L+ G+ D + +M G +
Sbjct: 198 --------------------PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296
+++ +A + + + P S L+ ++ L +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
Query: 297 EKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTC-----NIILNGLI 351
+ L + ++ L C + K + +++ R L
Sbjct: 298 KTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETK 357
Query: 352 GRGETDEAYRVFRRMIKLCEADADTYTMMI 381
R E + F LC D M+
Sbjct: 358 NRLEREVYEGRFSLYPFLCLLDEREVVRML 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 9e-10
Identities = 74/550 (13%), Positives = 142/550 (25%), Gaps = 143/550 (26%)
Query: 6 HSRNKMISGCISFLRRYNSSEPSTEALDAAKSI-----SKIMLSSPKVVLDT-----ALD 55
+ ++S F + + + D KSI ++ S V T L
Sbjct: 16 YQYKDILS---VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 56 QSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESL----AKIR 111
+ + VE+VL N F +Q+ R Y + L
Sbjct: 73 SKQEEMVQKFVEEVLRI--NYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 112 QYQIM-WDLVNAMRTK-RMLNVETFCII--M-------------RKYARVQKVEEAVYTF 154
+Y + +R L +I + Y K++ ++
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY-SILLEGWGKD 213
N+ L LL + N + +K R I + LL K
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLR-IHSIQAELRRLL----KS 240
Query: 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
+ V N ++ CK ++ + V
Sbjct: 241 KPYENCLLVLLN-V---QNAKAWNA---FNLSCKI--------LLTTRFKQVTD------ 279
Query: 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVA----------------MYNALIGAFCK 317
L ++ T E +L ++I +
Sbjct: 280 -FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 318 --ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYR---VFRRMIK---- 368
+ N K +N + + LN L E + + VF
Sbjct: 339 DGLATWDN----WKHVNCDKL---TTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 369 -LC----EADADTYTMMIKMFCQGGELEKAFKVWK------YMKLKRFI---PSMHTFSV 414
L + +++ + +EK K Y++LK + ++H
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RS 448
Query: 415 LIN------GLCDKGIVSDSCVLLEDM-----IE---KGIRPSGETFGKLRKLLIKEGRE 460
+++ ++ D I K I E R + +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPY----LDQYFYSHIGHHLKNIEH-PERMTLFRMVFL----- 498
Query: 461 DVLKFLQEKM 470
D +FL++K+
Sbjct: 499 D-FRFLEQKI 507
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-08
Identities = 75/535 (14%), Positives = 160/535 (29%), Gaps = 135/535 (25%)
Query: 3 KVYHS-RNKMISGCISFLRRYNSSEPS-----TEALDAAKSISKI----MLSSPKVVL-- 50
++Y R+++ + F +YN S +AL + + +L S K +
Sbjct: 110 RMYIEQRDRLYNDNQVF-AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 51 DTALDQSGIRVSPEIV-----------EDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRA 99
D L + E VLE + + +HS
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-----LLYQIDPNWTSRSDHSSNI 223
Query: 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159
+ A++R+ N + +++ VQ +A FN+ K
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCL------------LVLLN---VQN-AKAWNAFNLSCK 267
Query: 160 YGV-TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN-LP 217
+ T+ + L +A ++ + S+LL+ P LP
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--------PDEVKSLLLKYLDCRPQDLP 319
Query: 218 RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277
R E++ T NP + ++ I +S+ + ++ + V
Sbjct: 320 R------EVLTT--NPRRL-----------------SI-IAESIRDGLATWDNWKH---V 350
Query: 278 HTYGVENRIEDAVDTF--LEMEKN----GIL-ADVAMYNALIGAFCKANKFKNVYRVLKD 330
+ + IE +++ E K + + L+ +V V+
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 331 MNSKGVA---PNSRTCNIILNGLIGRGETDEAYRVFRRMI-------KLCEAD-----AD 375
++ + P T +I L + + + Y + R ++ D D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 376 TYTM------MIKMFCQGGELEKAFKVWKYMKLKRFIPS--MHTFSVLINGLCDKGIVSD 427
Y + + E F++ ++ RF+ H + G + +
Sbjct: 471 QYFYSHIGHHLKN--IEHPERMTLFRMV-FLDF-RFLEQKIRHDST----AWNASGSILN 522
Query: 428 SCVLLEDMI--EKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
L+ + + I + + +L +L FL + L+ D
Sbjct: 523 ---TLQQLKFYKPYICDNDPKYERLVN--------AILDFLPKIEENLICSKYTD 566
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 28/220 (12%), Positives = 55/220 (25%), Gaps = 47/220 (21%)
Query: 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242
RK + D +K P+ + + E + + T+ +M
Sbjct: 48 RKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA 107
Query: 243 -DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301
+ D AL + DS C ++ V +R++ A +M+
Sbjct: 108 ASIYFYDQNPDAALRTLHQGDSLEC------MAMTVQILLKLDRLDLARKELKKMQD--- 158
Query: 302 LADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL---NGLIGRGETDE 358
++ + + G + +
Sbjct: 159 ----------------------------------QDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 359 AYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398
AY +F+ M C G E A V +
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 480 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.67 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.56 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.55 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.49 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.44 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.41 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.3 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.26 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.23 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.23 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.14 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.13 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.09 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.08 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.08 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.07 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.04 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.03 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.0 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.99 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.97 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.97 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.87 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.86 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.84 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.84 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.84 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.83 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.83 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.82 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.81 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.81 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.8 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.77 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.76 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.74 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.74 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.74 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.73 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.72 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.72 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.7 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.7 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.68 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.66 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.65 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.63 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.61 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.57 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.55 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.54 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.53 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.49 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.49 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.48 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.48 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.47 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.47 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.44 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.4 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.38 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.36 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.35 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.35 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.34 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.33 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.25 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.24 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.23 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.21 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.2 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.15 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.15 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.11 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.09 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.07 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.06 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.05 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.02 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.01 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.0 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.94 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.93 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.9 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.85 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.83 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.83 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.74 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.71 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.57 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.46 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.25 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.21 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.14 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.12 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.01 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.94 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.92 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.83 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.71 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.67 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.66 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.66 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.65 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.64 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.59 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.56 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.56 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.53 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.4 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.36 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.34 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.94 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.71 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.56 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.54 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.14 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.89 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.05 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.83 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.78 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.42 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.98 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.91 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.67 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.23 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.74 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.58 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.55 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.42 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.35 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.99 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.85 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.54 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.79 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.61 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.33 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.78 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.92 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.85 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.84 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.93 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.52 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.37 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.35 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.05 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 80.69 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=297.90 Aligned_cols=408 Identities=10% Similarity=0.057 Sum_probs=337.9
Q ss_pred CCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---------
Q 011652 59 IRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKR--------- 127 (480)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------- 127 (480)
..|++..+..+...+...++ .|+.+|+.+... ++++.+++.++..|.+.|++++|.++|+++....
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccc
Confidence 34566666666666666655 677777766433 3577788888888888888888888887432221
Q ss_pred -------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHH----------------------------
Q 011652 128 -------MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGL---------------------------- 172 (480)
Q Consensus 128 -------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------------------- 172 (480)
+.+..+|..++.+|.+.|++++|+++|+++.+.+ +.+...+..+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (597)
T 2xpi_A 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268 (597)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGH
T ss_pred cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchH
Confidence 1246778888888888888888888888887754 3333333333
Q ss_pred ----------HHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011652 173 ----------LSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 173 ----------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (480)
+..|.+.|++++|.++|+++... +++..+|+.++..+.+.|++++|.++|+++.+.+.. +..++..++
T Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 346 (597)
T 2xpi_A 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHL 346 (597)
T ss_dssp HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHH
Confidence 34455667788888888877664 578899999999999999999999999999977543 788899999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 011652 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFK 322 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 322 (480)
.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998654 6678899999999999999999999999998753 336889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 323 NVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 323 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
+|..+|+++.+.+. .+..++..++.+|.+.|++++|.++|+.+.+..+.+..+|..++..|.+.|++++|.++|+++.+
T Consensus 425 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 425 QAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999998743 37889999999999999999999999999997788999999999999999999999999999987
Q ss_pred C----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 403 K----RFIPS--MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 403 ~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.++++.
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 5 55677 7899999999999999999999999999875 457899999999999999999999999999988764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=293.38 Aligned_cols=405 Identities=10% Similarity=-0.038 Sum_probs=353.8
Q ss_pred CCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH
Q 011652 61 VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 138 (480)
++...+..++..+.+.++ .|+.+|+.+... .|+..++..++..|.+.|++++|..+|+.+... +.+..++..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHH
Confidence 355667788888887776 899999988743 257889999999999999999999999987533 36889999999
Q ss_pred HHHHHhCCHHHHHHHHHHHH-hc--------------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhH
Q 011652 139 RKYARVQKVEEAVYTFNVMQ-KY--------------GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~-~~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 203 (480)
.+|.+.|++++|+++|+++. .. +.+++..+|+.++.+|.+.|++++|.++|+++.+..+.+...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999998532 21 2344688999999999999999999999999987544455444
Q ss_pred HHH--------------------------------------HHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011652 204 SIL--------------------------------------LEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVL 245 (480)
Q Consensus 204 ~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (480)
..+ +..|.+.|++++|.++|+++.+. +++..+++.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 433 56677889999999999999875 57899999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 011652 246 CKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 325 (480)
.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999998875 5578889999999999999999999999998653 457889999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011652 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405 (480)
Q Consensus 326 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 405 (480)
.+|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+..+.+..+|..++.+|.+.|++++|.++|+++.+...
T Consensus 394 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 394 RYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999987532 26779999999999999999999999999997788999999999999999999999999999988653
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 406 IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRPS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 406 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.++.+
T Consensus 473 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 473 -YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred -CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 37899999999999999999999999999876 66788 78999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-29 Score=233.80 Aligned_cols=372 Identities=12% Similarity=0.075 Sum_probs=309.2
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
+.|.+.++.+.+..+ .+...+..+...+...|++++|...++......+.+..+|..+...+.+.|++++|++.|+++
T Consensus 16 ~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 16 EAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 378888887766543 567778888888889999999999999988888888889999999999999999999999998
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhh
Q 011652 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (480)
.+.. |.+..+|..+..++...|++++|.+.|+++....+.+...+..+...+...|++++|.+.|+++.+... .+..+
T Consensus 94 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 171 (388)
T 1w3b_A 94 LRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVA 171 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHH
Confidence 8764 556678888999999999999999999998876666777888888899999999999999999887642 25678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
|..+...+...|++++|...++++...+ +.+...+..+...+...|++++|...+++..+.. +.+..++..+...|.+
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHH
Confidence 8888899999999999999999988865 4567788888899999999999999999887653 2357788888899999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
.|++++|...++++.+.+.. +..++..+...+.+.|++++|...++++.+..+.+..++..+...+...|++++|.+.+
T Consensus 250 ~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999886433 56678888889999999999999999998888888999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011652 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|
T Consensus 329 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 329 RKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 9988764 3367888899999999999999999999998743 224556666666665554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-28 Score=229.42 Aligned_cols=367 Identities=12% Similarity=0.058 Sum_probs=327.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
+...+.+.|++++|.+.++.+.+..|.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 34567889999999999999999888888899999999999999999999999998865 67889999999999999999
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
++|...|+++....|.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999998866777889999999999999999999999999986422 45567778889999999999999999998
Q ss_pred hCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh
Q 011652 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342 (480)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 342 (480)
... +.+..+|..+..++...|++++|...|+++.+.+. .+...+..+...+...|++++|...+.+..+..+. +..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 864 55678899999999999999999999999988643 36788999999999999999999999999886432 5778
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+..+..++...|++++|...++++.+..+.++.+|..+..++.+.|++++|.+.++++.+.. +.+..++..+...+...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence 89999999999999999999999999778889999999999999999999999999998864 45889999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 423 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.++++.++.+.
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999998753 446788999999999999999999999999887643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=246.38 Aligned_cols=202 Identities=17% Similarity=0.249 Sum_probs=100.7
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCC---------HHH
Q 011652 219 AREIFREMVDTGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR---------IED 288 (480)
Q Consensus 219 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~ 288 (480)
+..+.+++.+.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3344444444444332 223555566666666666666666666666666666666666666654433 344
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred -cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 369 -LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 369 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
++.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|+
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 4555555555555555555555555555555555555555555555544444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=244.18 Aligned_cols=205 Identities=17% Similarity=0.240 Sum_probs=181.6
Q ss_pred hhHHHHHHHhhc-CCCCC-hhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---------H
Q 011652 183 RKAQEIFDCMKD-RFIPD-SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR---------V 251 (480)
Q Consensus 183 ~~a~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 251 (480)
..+..+...+.+ ...+. ...++.+|++|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 345556666655 33333 346889999999999999999999999999999999999999999987664 6
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 011652 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331 (480)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 331 (480)
++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhc
Q 011652 332 NSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK-LCEADADTYTMMIKMFCQG 387 (480)
Q Consensus 332 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 387 (480)
.+.|+.||..||+.++.+|++.|+.++|.+++++|.+ +..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999 8999999999999999864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-24 Score=206.87 Aligned_cols=361 Identities=10% Similarity=0.027 Sum_probs=293.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++..|..+...+.+.|++++|..+|+.+....+.+..++..+...+...|++++|+..|+.+.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 5778899999999999999999999999998888889999999999999999999999999999876 567889999999
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCCh---hhHHHHH------------HHhhcCCChhHHHHHHHHHHHcCCCCChhhHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDS---KTYSILL------------EGWGKDPNLPRAREIFREMVDTGCNPDIVTYG 239 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (480)
+|...|++++|...|+++....+.+. ..+..++ ..+...|++++|...|+++.+... .+...+.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHH
Confidence 99999999999999999988666666 6666664 448889999999999999987643 3678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------
Q 011652 240 IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNAL-------- 311 (480)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------- 311 (480)
.+..+|...|++++|.+.++++.... +.+..++..+..+|...|++++|...|+++.+... .+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764 55788899999999999999999999999986532 244455444
Q ss_pred ----HHHHHHcCCHhHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 312 ----IGAFCKANKFKNVYRVLKDMNSKGVAPN-----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 312 ----i~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
...+...|++++|...++++.+. .|+ ...+..+..++.+.|++++|...++.+.+..+.+..+|..+..
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78899999999999999999885 344 3467888899999999999999999999877888999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----ChHHHHHHHHHH-HHcC--CCC
Q 011652 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING------------LCDKG-----IVSDSCVLLEDM-IEKG--IRP 442 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~~-~~~~--~~p 442 (480)
+|...|++++|...++++.+.... +...+..+..+ |...| +.+++.+.++++ .... ..|
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999886522 55666666533 33334 566778888763 3321 112
Q ss_pred CH-------HHHHHHHHHHHhcCCHHH
Q 011652 443 SG-------ETFGKLRKLLIKEGREDV 462 (480)
Q Consensus 443 ~~-------~~~~~l~~~~~~~g~~~~ 462 (480)
+. ..+..+..+|...|+.+.
T Consensus 417 ~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 417 NEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22 245555566655555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-25 Score=211.45 Aligned_cols=398 Identities=11% Similarity=0.033 Sum_probs=308.4
Q ss_pred HHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCH
Q 011652 70 LEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV 147 (480)
Q Consensus 70 l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 147 (480)
-..+...++ .|+..|+.+.... |++.+|..+...+.+.|++++|.+.++++.+.++.+..++..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 334444444 8999998887664 58889999999999999999999999999888888888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHH-----------------------------------HHh
Q 011652 148 EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF-----------------------------------DCM 192 (480)
Q Consensus 148 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-----------------------------------~~~ 192 (480)
++|...|+.+.+.+ +++......++..+........+.+.+ ..+
T Consensus 90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 99999999988876 344444444443333222111111111 001
Q ss_pred hc-C---------CCCChhhHHHHHHHhhc---CCChhHHHHHHHHHHH-----cCCCC--------ChhhHHHHHHHHH
Q 011652 193 KD-R---------FIPDSKTYSILLEGWGK---DPNLPRAREIFREMVD-----TGCNP--------DIVTYGIMVDVLC 246 (480)
Q Consensus 193 ~~-~---------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~~--------~~~~~~~l~~~~~ 246 (480)
.. . .+.+...+......+.. .|++++|...|+++.+ ....| +..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 00 0 01124444455554444 8999999999999887 31122 3456778888999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 011652 247 KAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYR 326 (480)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 326 (480)
..|++++|...++++...... ...+..+..++...|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999887533 78888899999999999999999999987643 366788889999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011652 327 VLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406 (480)
Q Consensus 327 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 406 (480)
.++++.+.... +...+..+...+...|++++|...++.+.+..+.+..++..+...+...|++++|...++++......
T Consensus 326 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 326 DFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 99999887443 56788888899999999999999999999877778889999999999999999999999988764311
Q ss_pred -CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 407 -PS----MHTFSVLINGLCD---KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 407 -p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++..++.+.
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 11 3488889999999 999999999999998764 346778888999999999999999999999887654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-24 Score=200.54 Aligned_cols=328 Identities=9% Similarity=0.044 Sum_probs=269.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcC
Q 011652 116 MWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDR 195 (480)
Q Consensus 116 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 195 (480)
+...+.......+.+...+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+.
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444555555666778889999999999999999999999998864 667899999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCCh----hhHHHH------------HHHHHhcCCHHHHHHHHH
Q 011652 196 FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI----VTYGIM------------VDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l------------~~~~~~~g~~~~a~~~~~ 259 (480)
.+.+..++..++.++.+.|++++|.+.|+++.+.. |+. ..+..+ ...+...|++++|...++
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67789999999999999999999999999999753 443 455544 445889999999999999
Q ss_pred HhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 011652 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339 (480)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 339 (480)
++.... +.+..++..+..+|...|++++|...|+++.+.. +.+..++..+...|...|++++|...++++.+.... +
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-H 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-h
Confidence 998864 5678889999999999999999999999998753 347889999999999999999999999999875322 3
Q ss_pred hhhHHHH------------HHHHHhCCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 340 SRTCNII------------LNGLIGRGETDEAYRVFRRMIKLCEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 340 ~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
...+..+ ...+...|++++|...++.+.+..+.+ ...+..+..++.+.|++++|...++++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344444 788899999999999999999855555 447889999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011652 404 RFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
. +.+...|..+..+|...|++++|...++++.+.. +-+...+..+.
T Consensus 325 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 325 E-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 4 2378999999999999999999999999999753 22455555555
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-23 Score=202.57 Aligned_cols=375 Identities=10% Similarity=-0.012 Sum_probs=294.2
Q ss_pred CCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHH
Q 011652 61 VSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIM 138 (480)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 138 (480)
|++..+..+...+...++ .|.+.|+.+.+..+ .+..+|..+..++.+.|++++|...|+.+...++.+......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 577777777777766555 89999998876644 57899999999999999999999999999988875555555555
Q ss_pred HHHHHhCCHHHHHHHHHHHHhc-----------------------------------CC---------CCCHHHHHHHHH
Q 011652 139 RKYARVQKVEEAVYTFNVMQKY-----------------------------------GV---------TQNLAAFNGLLS 174 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~-----------------------------------~~---------~~~~~~~~~ll~ 174 (480)
..+........+.+.+..+... .. +.+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 5544433333333222111100 00 112444444444
Q ss_pred HHHc---cCChhhHHHHHHHhhc-----C--C-------CCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhh
Q 011652 175 ALCK---SKNVRKAQEIFDCMKD-----R--F-------IPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 175 ~~~~---~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (480)
.+.. .|++++|...|+++.. . . +.+..++..+...+...|++++|...++++.+.... ...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHH
Confidence 4444 8999999999999876 2 1 334567888999999999999999999999886533 788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
+..+...+...|++++|...++.+.... +.+...+..+..++...|++++|...++++.+.... +...+..+...+..
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHH
Confidence 8889999999999999999999998865 556778899999999999999999999999886433 56788888999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh---cC
Q 011652 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEAD------ADTYTMMIKMFCQ---GG 388 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~g 388 (480)
.|++++|...++++.+.... +...+..+...+...|++++|...++.+.+..+.+ ...+..+..++.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999876332 56788889999999999999999999998732322 4489999999999 99
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
++++|...++++..... .+..++..+...|.+.|++++|...|+++.+.. |+..
T Consensus 430 ~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~ 483 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTME 483 (514)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHH
T ss_pred CHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccH
Confidence 99999999999987653 367888999999999999999999999999854 4543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-23 Score=198.47 Aligned_cols=398 Identities=11% Similarity=0.095 Sum_probs=296.4
Q ss_pred HHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 011652 65 IVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYA 142 (480)
Q Consensus 65 ~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 142 (480)
.+...-..+...++ .|+..|+.+....+ .++.+|..+...+.+.|++++|.+.|+++...++.+..++..+...+.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 33344444444454 78999988876654 578889999999999999999999999998888888889999999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCC-------CCChh--------------
Q 011652 143 RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRF-------IPDSK-------------- 201 (480)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------------- 201 (480)
..|++++|+..|+.+.. .|+.. ...+..+...+....|...++.+.... .|+..
T Consensus 105 ~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999964322 22221 122333444455566777776664421 11111
Q ss_pred ----------------hHHHHHHHhhcC--------CChhHHHHHHHHHHHcCCCCC--------hhhHHHHHHHHHhcC
Q 011652 202 ----------------TYSILLEGWGKD--------PNLPRAREIFREMVDTGCNPD--------IVTYGIMVDVLCKAG 249 (480)
Q Consensus 202 ----------------~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g 249 (480)
....+...+... |++++|..+++++.+.. |+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcc
Confidence 222222222222 37888999999988653 33 224666777888899
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011652 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
++++|...++...... |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999998864 557888889999999999999999999988764 3367888999999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----
Q 011652 330 DMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR----- 404 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 404 (480)
++.+.... +...+..+...+...|++++|...++.+.+..+.+...+..+...+...|++++|.+.++++.+..
T Consensus 335 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 99886433 567888899999999999999999999998778888899999999999999999999999887542
Q ss_pred CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 405 FIPSMHTFSVLINGLCDK----------GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.......+......+... |++++|...|+++.+.. +.+...+..+..++.+.|++++|.+.+++..++.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 111223345556677777 99999999999998764 3467788899999999999999999999998876
Q ss_pred CC
Q 011652 475 KE 476 (480)
Q Consensus 475 ~~ 476 (480)
+.
T Consensus 493 ~~ 494 (537)
T 3fp2_A 493 RT 494 (537)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-21 Score=175.55 Aligned_cols=332 Identities=10% Similarity=0.013 Sum_probs=210.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
++..+..+...+.+.|++++|...|+.+....+.+..++..+...+...|++++|+..++.+.+.. +.+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456777888888889999999999999888888788888889999999999999999998888764 4567788888888
Q ss_pred HHccCChhhHHHHHHHhhcCCC---CChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011652 176 LCKSKNVRKAQEIFDCMKDRFI---PDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+...|++++|...|++.....+ .+...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 8889999999999988877555 45555554421100 001122233444555555
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
+|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554432 3344445555555555555555555555554432 2244455555555555555555555555555
Q ss_pred hCCCCCChhhHH------------HHHHHHHhCCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhcCCHHHHHHH
Q 011652 333 SKGVAPNSRTCN------------IILNGLIGRGETDEAYRVFRRMIKLCEADAD----TYTMMIKMFCQGGELEKAFKV 396 (480)
Q Consensus 333 ~~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~ 396 (480)
+.... +...+. .+...+...|++++|...++.+.+..+.+.. .+..+..++...|++++|...
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 216 KLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 43211 111111 2245566777777777777777764444442 344566777777888888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 397 WKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 397 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 295 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 295 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 77777653 2266777777777777888888888888777643 2234455555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-21 Score=185.87 Aligned_cols=366 Identities=12% Similarity=0.052 Sum_probs=278.8
Q ss_pred CHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011652 62 SPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 139 (480)
++..+..+...+...++ .|++.|+.+....+ .++.++..+...+...|++++|...|+.+ ...+ ......+.
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~~ 131 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRASANESLGNFTDAMFDLSVL-SLNG---DFDGASIE 131 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C--------------
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCC---CCChHHHH
Confidence 45556555555555444 89999999876654 58899999999999999999999999743 3333 11222344
Q ss_pred HHHHhCCHHHHHHHHHHHHhcC------CCCCHH------------------------------HHHHHHHHHHcc----
Q 011652 140 KYARVQKVEEAVYTFNVMQKYG------VTQNLA------------------------------AFNGLLSALCKS---- 179 (480)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~------------------------------~~~~ll~~~~~~---- 179 (480)
.+...+....|...++.+.... ..|+.. ....+...+...
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhh
Confidence 5555666678888888775431 112221 222222222222
Q ss_pred ----CChhhHHHHHHHhhcCCCCChh-------hHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011652 180 ----KNVRKAQEIFDCMKDRFIPDSK-------TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248 (480)
Q Consensus 180 ----~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (480)
|++++|..+++++....+.+.. ++..+...+...|++++|...+++..+. .|+...+..+...+...
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHh
Confidence 4788999999999886555543 4677778888999999999999999986 45678888999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 011652 249 GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVL 328 (480)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 328 (480)
|++++|.+.++++.... +.+..++..+..++...|++++|...++++.+... .+...+..+...+...|++++|...+
T Consensus 290 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp SCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998865 55678899999999999999999999999987643 35678888999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhc----------CCHHH
Q 011652 329 KDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC------EADADTYTMMIKMFCQG----------GELEK 392 (480)
Q Consensus 329 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~----------g~~~~ 392 (480)
+++.+.... +...+..+...+...|++++|...++.+.+.. ......+..+...+... |++++
T Consensus 368 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 368 NETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 999886432 56788899999999999999999999988721 12223345556777777 99999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
|...++++.+... .+...+..+...|.+.|++++|...|+++.+..
T Consensus 447 A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 447 AIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999988653 367889999999999999999999999999764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-20 Score=173.03 Aligned_cols=316 Identities=10% Similarity=0.027 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
+..+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|...++++....+.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556667777777777777777777777654 455667777777777777777777777777665455666677777777
Q ss_pred hcCCChhHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCH
Q 011652 211 GKDPNLPRAREIFREMVDTGCNP----DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI 286 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (480)
...|++++|...+++..+. .| +...+..+...+ . ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 7777777777777776654 23 111121111110 0 11233446788899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 011652 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRM 366 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 366 (480)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998764 34788899999999999999999999999998743 36788999999999999999999999999
Q ss_pred HhcCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHH
Q 011652 367 IKLCEADADTYTMM------------IKMFCQGGELEKAFKVWKYMKLKRFIPSM----HTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 367 ~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~ 430 (480)
.+..+.+...+..+ ...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 215 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 98777777665433 67789999999999999999876522 33 335567889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 431 LLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 431 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.++++.+.. +.+...+..+..++.+.|++++|.+.+++..++.+.
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999864 347888999999999999999999999999988754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-20 Score=168.20 Aligned_cols=286 Identities=10% Similarity=0.013 Sum_probs=166.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++..+..+...+...|++++|.++|+++....+.+...+..++..+...|++++|..+++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3445556666666667777777777777766666555566666666667777777777777666653 445566666666
Q ss_pred HHHccC-ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011652 175 ALCKSK-NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 175 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.+...| ++++|...|++.....+.+...|..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 666666 6666666666666554555566666666666666666666666666554321 23444445555555555555
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
|.+.+++..... +.+. ..+..+...+...|++++|...++++.+
T Consensus 178 A~~~~~~al~~~-~~~~-----------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 178 AERFFSQALSIA-PEDP-----------------------------------FVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHTTC-TTCH-----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCh-----------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 555555555442 2333 4444444444445555555554444433
Q ss_pred CC--------CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011652 334 KG--------VAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405 (480)
Q Consensus 334 ~~--------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 405 (480)
.. .+.....+..+..++...|++++|...++++.+..+.+...+..+..+|...|++++|.+.++++.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 21 0222345556666666666666666666666655555566666666666666666666666666655432
Q ss_pred CCCHHHHHHHHHHH
Q 011652 406 IPSMHTFSVLINGL 419 (480)
Q Consensus 406 ~p~~~~~~~l~~~~ 419 (480)
.+...+..+..++
T Consensus 302 -~~~~~~~~l~~~~ 314 (330)
T 3hym_B 302 -DDTFSVTMLGHCI 314 (330)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHH
Confidence 2455555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-20 Score=166.14 Aligned_cols=293 Identities=9% Similarity=-0.004 Sum_probs=233.5
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011652 163 TQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (480)
+.+...+..+...+...|++++|.++|+++....+.+...+..++..+...|++++|..+++++.+... .+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 445556666777777778888888888887776666777777777888888888888888888876532 2566777778
Q ss_pred HHHHhcC-CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011652 243 DVLCKAG-RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 243 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
..+...| ++++|.+.+++..... +.+...+..+..++...|++++|...++++.+.... +...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 8888888 8888888888887764 445677888888888999999999999888775432 456677788899999999
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHhcCCHHH
Q 011652 322 KNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC---------EADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 322 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +....++..+..+|...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999987433 67788999999999999999999999998732 4556899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH
Q 011652 393 AFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL-IKEGRED 461 (480)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 461 (480)
|...++++.+... .+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999987653 367889999999999999999999999998754 33667777888877 4566644
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-17 Score=154.21 Aligned_cols=332 Identities=11% Similarity=0.020 Sum_probs=149.5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----hCCHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR----VQKVEEA 150 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a 150 (480)
.|...|+.+.+. + ++..+..+...|.. .+++++|.++|++....+ ++..+..+...|.. .+++++|
T Consensus 61 ~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 61 QAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp HHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 444444444332 1 34444444444444 445555555555544433 33444444444444 4455555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhc----CCChhHHHHH
Q 011652 151 VYTFNVMQKYGVTQNLAAFNGLLSALCK----SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK----DPNLPRAREI 222 (480)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 222 (480)
+.+|+...+.| +...+..+..+|.. .++.++|.+.|++..+. .+...+..+...|.. .+++++|.++
T Consensus 135 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 135 VKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 55555544433 33344444444443 44455555555544432 134444444444444 4455555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhc----cCCHHHHHHHHH
Q 011652 223 FREMVDTGCNPDIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV----ENRIEDAVDTFL 294 (480)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 294 (480)
|++..+.| +...+..+...|.. .+++++|..++++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 55544432 33344444444443 445555555555444432 22333333333433 445555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHH
Q 011652 295 EMEKNGILADVAMYNALIGAFCKA-----NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG---ETDEAYRVFRRM 366 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~ 366 (480)
+..+.| +...+..+...|... ++.++|...+++..+.| +...+..+...|...| +.++|.++|++.
T Consensus 284 ~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a 357 (490)
T 2xm6_A 284 KSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKA 357 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 544432 233444444444443 45555555555544432 2233333444443333 444455555444
Q ss_pred HhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHc
Q 011652 367 IKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 438 (480)
.+. .++..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.
T Consensus 358 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 358 AAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 442 334444444444444 445555555555544433 33444444444444 44555555555555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-17 Score=161.76 Aligned_cols=405 Identities=10% Similarity=0.069 Sum_probs=293.2
Q ss_pred CHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011652 62 SPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMR 139 (480)
Q Consensus 62 ~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 139 (480)
+......++.. ...++ .|..+|+.+....+ .+...|..++..+.+.|+++.|..+|+++....| +...|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 55666666664 33333 89999999876643 6889999999999999999999999999988765 7778887775
Q ss_pred HH-HHhCCHHHHHH----HHHHHHhc-CCC-CCHHHHHHHHHHHHc---------cCChhhHHHHHHHhhcCCCCC--hh
Q 011652 140 KY-ARVQKVEEAVY----TFNVMQKY-GVT-QNLAAFNGLLSALCK---------SKNVRKAQEIFDCMKDRFIPD--SK 201 (480)
Q Consensus 140 ~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~--~~ 201 (480)
.. ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++... .|.+ ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQ 166 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHH
Confidence 43 35677777665 77766543 443 356778887776654 6889999999999887 2222 23
Q ss_pred hHHHHHHHhh-------------cCCChhHHHHHHHHHH------HcC---CCCC--------hhhHHHHHHHHHhc---
Q 011652 202 TYSILLEGWG-------------KDPNLPRAREIFREMV------DTG---CNPD--------IVTYGIMVDVLCKA--- 248 (480)
Q Consensus 202 ~~~~l~~~~~-------------~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~--- 248 (480)
.|........ +.+++..|..++.++. +.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 3443333221 2345666776666532 111 2333 13444444332221
Q ss_pred -CCH----HHHHHHHHHhhhCCCCccHHHHHHHHHHhhc-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHH
Q 011652 249 -GRV----DEALGIVKSMDSTVCRPTSFIYSVLVHTYGV-------ENRIE-------DAVDTFLEMEKNGILADVAMYN 309 (480)
Q Consensus 249 -g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~ 309 (480)
++. .++..+|++..... +.+...|...+..+.. .|+++ +|..+|++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 47778888887763 5567788888887775 79987 8999999998632344688899
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHh
Q 011652 310 ALIGAFCKANKFKNVYRVLKDMNSKGVAPN-S-RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM-FCQ 386 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 386 (480)
.++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|+.++|.++|++..+..+.+...|...+.. +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999986 443 2 4788888888899999999999999998555555555443333 346
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHhcCCHHHH
Q 011652 387 GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI-RPS--GETFGKLRKLLIKEGREDVL 463 (480)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a 463 (480)
.|++++|.++|+...+.. +.+...|..++..+.+.|+.++|..+|++++..+. .|+ ...|...+......|+.+.+
T Consensus 404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999988764 23688999999999999999999999999998642 332 45788888888889999999
Q ss_pred HHHHHHHHhhhC
Q 011652 464 KFLQEKMNLLVK 475 (480)
Q Consensus 464 ~~~~~~~~~l~~ 475 (480)
..+.+++.+.-+
T Consensus 483 ~~~~~r~~~~~p 494 (530)
T 2ooe_A 483 LKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHHCc
Confidence 999998877543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=166.62 Aligned_cols=289 Identities=11% Similarity=0.033 Sum_probs=195.8
Q ss_pred cCChhhHHH-HHHHhhcCCCC----ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011652 179 SKNVRKAQE-IFDCMKDRFIP----DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDE 253 (480)
Q Consensus 179 ~~~~~~a~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (480)
.|++++|.. .+++.....+. +...+..+...+.+.|++++|...|+++.+... .+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 55544331111 234455666666666666666666666665432 245555666666666666666
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHH---------------HHHHHHHHc
Q 011652 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN---------------ALIGAFCKA 318 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------------~li~~~~~~ 318 (480)
|...++++.... +.+..++..+..++...|++++|...++++.+.... +...+. ..+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666665543 345556666666666666666666666666554321 111111 023333488
Q ss_pred CCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 319 NKFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
|++++|...++++.+..... +..++..+...+...|++++|...++++.+..+.+..++..+...+...|++++|...+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999988763321 46788888899999999999999999998877788899999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP----------SGETFGKLRKLLIKEGREDVLKFLQ 467 (480)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (480)
+++.+... .+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..++...|++++|..++
T Consensus 275 ~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 99887642 367888999999999999999999999988643211 2678889999999999999999887
Q ss_pred HHHH
Q 011652 468 EKMN 471 (480)
Q Consensus 468 ~~~~ 471 (480)
++..
T Consensus 354 ~~~l 357 (368)
T 1fch_A 354 ARDL 357 (368)
T ss_dssp TTCH
T ss_pred HHHH
Confidence 6543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-20 Score=168.14 Aligned_cols=263 Identities=11% Similarity=-0.010 Sum_probs=171.4
Q ss_pred HHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011652 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248 (480)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (480)
+..+...+...|++++|...|+++....+.+..++..+..++...|++++|...|+++.+... .+..++..+...+...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 334444444444444444444444443334444444444444444444444444444443321 1334444444444444
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHH----------------HHHHHHhhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 011652 249 GRVDEALGIVKSMDSTVCRPTSFIY----------------SVLVHTYGVENRIEDAVDTFLEMEKNGILA-DVAMYNAL 311 (480)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l 311 (480)
|++++|.+.++++..... .+...+ ..+... ...|++++|...++++.+..... +..++..+
T Consensus 146 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHH-HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHH-hhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 444444444444444321 111111 122233 37788899999998887653221 47788888
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (480)
...|.+.|++++|...++++.+... .+...+..+...+...|++++|...++++.+..+.+..++..+..+|.+.|+++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 8899999999999999998887632 256788888899999999999999999998877788899999999999999999
Q ss_pred HHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011652 392 KAFKVWKYMKLKRFIP----------SMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 392 ~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (480)
+|...++++....... ...+|..+..+|...|++++|..++++.
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999887643111 2678999999999999999999887644
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-16 Score=148.98 Aligned_cols=365 Identities=11% Similarity=0.043 Sum_probs=308.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----hCCHHHHH
Q 011652 80 AFCFFKWAEKQQNYEHSVRAYHSMIESLAK----IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYAR----VQKVEEAV 151 (480)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 151 (480)
++..++..... .++..+..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34445444332 377888888888887 899999999999998875 67889999999998 89999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhc----CCChhHHHHHH
Q 011652 152 YTFNVMQKYGVTQNLAAFNGLLSALCK----SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK----DPNLPRAREIF 223 (480)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 223 (480)
++|++..+.| +...+..|...|.. .+++++|...|++.... -+...+..+...|.. .+++++|.+.|
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999998865 66777788888887 78999999999998763 267788888888877 88999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhc----cCCHHHHHHHHHH
Q 011652 224 REMVDTGCNPDIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV----ENRIEDAVDTFLE 295 (480)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 295 (480)
++..+.| +...+..+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999864 67788888888887 899999999999998865 55667777777775 8899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC-----CChHHHHHHHHHH
Q 011652 296 MEKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR-----GETDEAYRVFRRM 366 (480)
Q Consensus 296 ~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~ 366 (480)
..+.| +...+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|..++++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 98764 56677778888887 899999999999998864 455777788888877 8999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 011652 367 IKLCEADADTYTMMIKMFCQGG---ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 439 (480)
.+. .+...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.|
T Consensus 323 ~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 323 AEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred Hhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 873 45678888888888866 7899999999999875 77889999999988 899999999999999876
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhhC
Q 011652 440 IRPSGETFGKLRKLLIK----EGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 440 ~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~l~~ 475 (480)
++..+..+...|.+ .++.++|.+++++..+.+.
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 57778888888988 8999999999999988763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=167.61 Aligned_cols=269 Identities=10% Similarity=0.009 Sum_probs=201.4
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (480)
+...+..+...+.+.|++++|..+|+++.+... .+..++..+..++...|++++|+..++++.... +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445577777777777888888888877776542 256677777777777888888888887777654 445677777777
Q ss_pred HhhccCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CChhhHHHHHH
Q 011652 279 TYGVENRIEDAVDTFLEMEKNGIL---------ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PNSRTCNIILN 348 (480)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~ 348 (480)
+|...|++++|...++++.+.... .....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 788888888888888777653210 01223444577888889999999999999886432 15678888999
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
.+...|++++|...++++.+..+.+..+|..+..+|...|++++|...++++.+... .+..++..+..+|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999988788899999999999999999999999999987642 3588899999999999999999
Q ss_pred HHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 429 CVLLEDMIEKGIR-----------PSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 429 ~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
...|+++.+.... .+...|..+..++...|+.+.+.++.++-
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999864211 13567889999999999999998887653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=167.18 Aligned_cols=265 Identities=9% Similarity=-0.042 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC 246 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (480)
..+..+...+.+.|++++|...|+++....+.+..+|..+...+...|++++|...|+++.+... .+..++..+..+|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 33555555666666666666666666554455566666666666666666666666666665432 24556666666666
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcc----------HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 011652 247 KAGRVDEALGIVKSMDSTVCRPT----------SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL-ADVAMYNALIGAF 315 (480)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 315 (480)
..|++++|...++++.+.. +.+ ...+..+...+...|++++|...++++.+.... .+..++..+...|
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6666666666666665532 111 222334577888888899999999888775322 1577888888899
Q ss_pred HHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011652 316 CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 395 (480)
...|++++|...++++.+.... +..++..+..++...|++++|...++++.+..+.+..++..+..+|...|++++|..
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998876332 577888899999999999999999999988777889999999999999999999999
Q ss_pred HHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 396 VWKYMKLKRFI-----------PSMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 396 ~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
.++++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99988764211 1357889999999999999888877664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-18 Score=153.45 Aligned_cols=278 Identities=11% Similarity=0.020 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+......+...|++++|..+|+++....+.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34556667777888888888888888887777777888888888888888888888888887764 55677777788888
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHH-HH-HHHhcCCHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM-VD-VLCKAGRVDEA 254 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~a 254 (480)
...|++++|...++++....+.+...+..+.... |+......+ .. .+...|++++|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHH
Confidence 8888888888888887765444444444431100 000001111 11 24444555555
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555554442 2344555555555555555555555555555432 224555566666666666666666666666554
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 335 GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA------------DADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 335 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 400 (480)
.. .+...+..+...+...|++++|.+.++++.+..+. +..+|..+..++...|++++|..++++.
T Consensus 236 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 NP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 13455666666666666666666666666653232 4566677777777777777777766543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-18 Score=152.58 Aligned_cols=280 Identities=10% Similarity=-0.015 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
...+..+...+...|++++|..+|+.+.+.. +.+..++..+..++...|++++|...++++....+.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3445566677777777777777777777654 446667777777777777777777777777665555666777777777
Q ss_pred hcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHH-HH-HhhccCCHHH
Q 011652 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVL-VH-TYGVENRIED 288 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~ 288 (480)
...|++++|.+.++++.+.... +...+..+... .|+......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 7777777777777777654321 12222111100 0111111122 22 3788899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987643 3788899999999999999999999999988643 2577889999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 369 LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-----------SMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
..+.+..++..+..+|...|++++|.+.++++....... +...|..+..++.+.|++++|..++++..
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 778889999999999999999999999999988754221 46789999999999999999999987654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.7e-19 Score=158.02 Aligned_cols=290 Identities=10% Similarity=0.098 Sum_probs=134.4
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011652 65 IVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV 144 (480)
Q Consensus 65 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 144 (480)
.+..+|..+.. -+.|.++++.+ +++.+|..++.++.+.|++++|++.|.+. ++..+|..++..+...
T Consensus 8 a~~~ll~~~~~-ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 8 AVQVLIEHIGN-LDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccC-HHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhC
Confidence 34444544432 23788898877 24469999999999999999999999653 4677899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHH
Q 011652 145 QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFR 224 (480)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (480)
|++++|+..++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|+.++..|...|.+++|..+|.
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ------------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988877774 4567889999999999999999887774 4677899999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC
Q 011652 225 EMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD 304 (480)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 304 (480)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 76 47999999999999999999999988 27889999999999999999996554432 234
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh--cCCC------CHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEA------DADT 376 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~------~~~~ 376 (480)
+.-...++..|.+.|.+++|..+++...... +-....|+-+...|++- ++++..+.++...+ +.+| +...
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4456678899999999999999999988764 33566777776666653 45555544444433 2222 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 011652 377 YTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~ 397 (480)
|..+...|...++++.|....
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHH
Confidence 889999999999999887743
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-15 Score=144.49 Aligned_cols=373 Identities=9% Similarity=0.022 Sum_probs=270.7
Q ss_pred CCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHhC-C--C
Q 011652 59 IRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESL-AKIRQYQIMWD----LVNAMRTK-R--M 128 (480)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~~~~~-~--~ 128 (480)
.+-++......+......+. .|..+|+.+.... |++..|...+... ...|+++.|.+ +|+..... | +
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~ 118 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 118 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc
Confidence 34466666666666655554 8999999987664 5788888888644 45678877765 77766542 3 3
Q ss_pred CCHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-------------HccCChhhHH
Q 011652 129 LNVETFCIIMRKYAR---------VQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL-------------CKSKNVRKAQ 186 (480)
Q Consensus 129 ~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~~~~~~~a~ 186 (480)
.+...|...+....+ .|+++.|..+|++..+....+....|....... .+.+++..|.
T Consensus 119 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~ 198 (530)
T 2ooe_A 119 MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNAR 198 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHH
Confidence 577888888887665 789999999999998831111123444332211 1345577777
Q ss_pred HHHHHh------hcC----CCCC--------hhhHHHHHHHhhcC----CCh----hHHHHHHHHHHHcCCCCChhhHHH
Q 011652 187 EIFDCM------KDR----FIPD--------SKTYSILLEGWGKD----PNL----PRAREIFREMVDTGCNPDIVTYGI 240 (480)
Q Consensus 187 ~~~~~~------~~~----~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ 240 (480)
.++... .+. .+|+ ...|...+...... ++. ..+..+|++.+... +-+...|..
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~ 277 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYE 277 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 777652 221 2443 24555555443322 233 37788999988753 336778888
Q ss_pred HHHHHHh-------cCCHH-------HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC--
Q 011652 241 MVDVLCK-------AGRVD-------EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD-- 304 (480)
Q Consensus 241 l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 304 (480)
++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 355 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCH
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCc
Confidence 8887775 78987 89999999987333556888999999999999999999999999985 343
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG-LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM 383 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 383 (480)
...|...+..+.+.|+.++|..+|++..+.... +...+...... +...|+.++|..+|+...+..+.++..|..++..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 357888888888999999999999999986322 22233322222 3468999999999999998777889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 384 FCQGGELEKAFKVWKYMKLKRF-IP--SMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998642 23 2458888888888899999999999998864
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.3e-17 Score=142.04 Aligned_cols=195 Identities=13% Similarity=0.112 Sum_probs=100.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011652 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 313 (480)
..++..+...+...|+.++|++.++++...+. +.+...+..+..++...|++++|++.+++ +.+...+..++.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~ 138 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHH
Confidence 33344444444444444444444444443322 12233333344444444444444444443 234445555555
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTC---NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 390 (480)
.+.+.|++++|...++++.+.. |+.... ...+..+...|++++|..+|+++.+..+.++..++.+..++.+.|++
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 5555555555555555555442 222111 11222233346666666666666665566666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHc
Q 011652 391 EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD-SCVLLEDMIEK 438 (480)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 438 (480)
++|...++++...... +..++..++..+...|+.++ +.++++++.+.
T Consensus 217 ~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6666666666654422 55566666666666666654 45666666653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-17 Score=143.97 Aligned_cols=252 Identities=10% Similarity=0.080 Sum_probs=165.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCh
Q 011652 139 RKYARVQKVEEAVYTFNVMQKYGVTQNL--AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL 216 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (480)
+.....|++..|+..++..... .|+. .....+..+|...|+++.|...++. ..+|+..++..+...+...++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 3445566777777766655432 2222 3444556677777777766654433 2355666677777777777777
Q ss_pred hHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 217 PRAREIFREMVDTGCNPD-IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
++|++.++++...+..|+ ...+..+..++...|++++|++.+++ +.+...+..++.++.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777776654443 44445555677777777777777765 34566677777777777777777777777
Q ss_pred HHHCCCCCCHHHH---HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 011652 296 MEKNGILADVAMY---NALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEA 372 (480)
Q Consensus 296 ~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 372 (480)
+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..|.
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 76653 332211 112233334477888888888887762 336667777778888888888888888888777777
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 011652 373 DADTYTMMIKMFCQGGELEK-AFKVWKYMKLKR 404 (480)
Q Consensus 373 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 404 (480)
++.++..++..+...|+.++ +.++++++.+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 78888888888888887765 567777777654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-15 Score=145.94 Aligned_cols=365 Identities=9% Similarity=-0.032 Sum_probs=245.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK---------RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY----- 160 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 160 (480)
.....||.+...+...|++++|++.|++..+. .+....+|..+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 45678999999999999999999999886532 2345678999999999999999999999877542
Q ss_pred C--CCCCHHHHHHHHHHHHc--cCChhhHHHHHHHhhcCCCCChhhHHHHHHH---hhcCCChhHHHHHHHHHHHcCCCC
Q 011652 161 G--VTQNLAAFNGLLSALCK--SKNVRKAQEIFDCMKDRFIPDSKTYSILLEG---WGKDPNLPRAREIFREMVDTGCNP 233 (480)
Q Consensus 161 ~--~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 233 (480)
+ ......++..+..++.. .+++++|...|++..+..|.++..+..+..+ +...++.++|++.+++..+....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 1 11234566655555544 4568999999999887656677777666555 34567888899999988875422
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011652 234 DIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYN 309 (480)
Q Consensus 234 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 309 (480)
+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+... .+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHH
Confidence 45555555544443 467889999999887764 56677888899999999999999999999887532 3566666
Q ss_pred HHHHHHHHc-------------------CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 011652 310 ALIGAFCKA-------------------NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370 (480)
Q Consensus 310 ~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (480)
.+...|... +..+.|...+++..+.... +...+..+...+...|++++|+..|+++.+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 666555332 2356777777777765332 56678888889999999999999999988743
Q ss_pred CCCHH---HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 011652 371 EADAD---TYTMMIK-MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGET 446 (480)
Q Consensus 371 ~~~~~---~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 446 (480)
+++.. .+..+.. .+...|++++|...+++..+.. |+...... ....+.+++++.+... +.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN-GADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHH
Confidence 33222 2233332 2346789999999999888754 44322221 2234455666666544 446778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 447 FGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+..+..++...|++++|.+.+++..+++.
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999988764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-18 Score=153.43 Aligned_cols=284 Identities=12% Similarity=0.103 Sum_probs=139.2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHH
Q 011652 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQE 187 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 187 (480)
-+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|+.
T Consensus 14 ~~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 36788999999999983 346999999999999999999999965 3577789999999999999999999
Q ss_pred HHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 011652 188 IFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267 (480)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (480)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 83 YLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 77776664 5567889999999999999999998884 377789999999999999999999999977
Q ss_pred ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011652 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 347 (480)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHH
Confidence 36999999999999999999999998 278999999999999999999966554422 2444456788
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC------CHHHHHHHHHHHH
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL-KRFIP------SMHTFSVLINGLC 420 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p------~~~~~~~l~~~~~ 420 (480)
..|.+.|.+++|..+++......+.....|+.+.-.|++- ++++..+-++.... .+++| +...|..+.-.|.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986678888999998888875 34444444433322 23333 4567999999999
Q ss_pred hcCChHHHHHH
Q 011652 421 DKGIVSDSCVL 431 (480)
Q Consensus 421 ~~g~~~~A~~~ 431 (480)
+.++++.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 99999988773
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-15 Score=148.68 Aligned_cols=354 Identities=15% Similarity=0.132 Sum_probs=242.8
Q ss_pred CCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHH
Q 011652 59 IRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQN-YEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFC 135 (480)
Q Consensus 59 ~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 135 (480)
-..+|+.+....+.+...+. +|+++++.+...+. |..+....+.++....+. +..+..++.++..... ..
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~ 1053 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------AP 1053 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HH
Confidence 45677777777777765555 78888877763332 445566666666666665 4455555555543111 23
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC
Q 011652 136 IIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215 (480)
Q Consensus 136 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (480)
-+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCC
Confidence 36677778888888888888752 12222333332 5678888888888664 57888888888888899
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 216 LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
+++|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++.....
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 98888888664 266778888888888899999888888877654 33333445888888888887544332
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHH
Q 011652 296 MEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADAD 375 (480)
Q Consensus 296 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 375 (480)
+ .++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~ 1251 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTR 1251 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHH
Confidence 2 245566777888888888888888888874 37888888888888888888888876 4567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 455 (480)
+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +-....|..+..++.
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 88888888888888888877655432 355677788888888888888888887776433 223334544554444
Q ss_pred h--cCCHHHHHHHH
Q 011652 456 K--EGREDVLKFLQ 467 (480)
Q Consensus 456 ~--~g~~~~a~~~~ 467 (480)
+ -++.-++.+++
T Consensus 1326 Ky~peklmEhlk~f 1339 (1630)
T 1xi4_A 1326 KFKPQKMREHLELF 1339 (1630)
T ss_pred hCCHHHHHHHHHHH
Confidence 4 33344444433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-15 Score=141.74 Aligned_cols=361 Identities=13% Similarity=0.036 Sum_probs=242.3
Q ss_pred HHHHHHHHHHhhCcH--HHHHHHHHHhhc-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--
Q 011652 64 EIVEDVLEKFRNAGT--LAFCFFKWAEKQ-------QNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-----R-- 127 (480)
Q Consensus 64 ~~~~~~l~~~~~~~~--~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-- 127 (480)
..++.+-..+...|+ .|++.|+.+.+. ...+....+|+.+..+|...|++++|...+++.... +
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 344433333334443 788888766421 122346788999999999999999999999887542 1
Q ss_pred -CCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHccCChhhHHHHHHHhhcCCCCChh
Q 011652 128 -MLNVETFCIIMRKYARV--QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA---LCKSKNVRKAQEIFDCMKDRFIPDSK 201 (480)
Q Consensus 128 -~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~ 201 (480)
+....++.....++... +++++|++.|++..+.. |.++..+..+..+ +...++.++|.+.+++..+..+.+..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 23567777777676665 46999999999998865 4456666665555 34567888899999888776566777
Q ss_pred hHHHHHHHhh----cCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 011652 202 TYSILLEGWG----KDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLV 277 (480)
Q Consensus 202 ~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (480)
++..+...+. ..+++++|.+++++...... .+...+..+...|...|++++|...+++..+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 7776665544 45678999999999887643 367788899999999999999999999998864 44566666666
Q ss_pred HHhhcc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 011652 278 HTYGVE-------------------NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP 338 (480)
Q Consensus 278 ~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 338 (480)
.+|... +.++.|...+++..+... .+..++..+...|...|++++|...|++..+....+
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 555322 235677788887766432 245567788899999999999999999998875443
Q ss_pred Chh--hHHHHHH-HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011652 339 NSR--TCNIILN-GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVL 415 (480)
Q Consensus 339 ~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 415 (480)
... .+..+.. .....|+.++|+..+++..+..+.+.... +....+.++++.....+ +.+..+|..+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~~l~~~~~~~l~~~-p~~~~~~~~L 436 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKDKLQKIAKMRLSKN-GADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHHHHHHHHHC-C-CTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 221 1222222 24578999999999999887444443221 12334555666655544 2367899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC
Q 011652 416 INGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
...|...|++++|++.|+++++.+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-18 Score=165.13 Aligned_cols=151 Identities=11% Similarity=0.143 Sum_probs=101.1
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHH---HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMV---DTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSV 275 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 275 (480)
-..+|+++|++|++.|++++|.++|++|. ..|+.||..|||+||++|++.|++++|.++|++|...|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567777777777777777777776654 346777777777777777777777777777777777777777777777
Q ss_pred HHHHhhccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC------hhhHHHHHH
Q 011652 276 LVHTYGVENR-IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN------SRTCNIILN 348 (480)
Q Consensus 276 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~ 348 (480)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+. .+++.++++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 7777777776 366777777777777777777777777554443 233333333 2233333 344455555
Q ss_pred HHHhCC
Q 011652 349 GLIGRG 354 (480)
Q Consensus 349 ~~~~~~ 354 (480)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-13 Score=136.68 Aligned_cols=317 Identities=12% Similarity=0.094 Sum_probs=252.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
...+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. .+..+|..+..++...
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 3447788889999999999999863 12222333332 788999999998865 3478899999999999
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
|++++|.+.|.+.. +...|..++.++.+.|++++|.++|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKAd-----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CCHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 99999999997753 88889999999999999999999999888754 33333445888999999988644443
Q ss_pred HhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 011652 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339 (480)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 339 (480)
+ .++...+..+...|...|++++|...|... ..|..+...|.+.|++++|.+.+++.. +
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 2 456667778999999999999999999985 379999999999999999999998873 5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|..+++.....+ +-....|..+...|
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 689999999999999999999877643 3677888899999999999999999998887655 23556777777777
Q ss_pred Hhc--CChHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 011652 420 CDK--GIVSDSCVLLEDMIEKGIRP------SGETFGKLRKLLIKEGREDVLKF 465 (480)
Q Consensus 420 ~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~ 465 (480)
++. ++..++.++|..-. +++| +...|..++..|.+.|+++.|..
T Consensus 1325 aKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 764 45555666655332 2222 46679999999999999998874
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-18 Score=165.07 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIK----LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
.||+++|.+|++.|++++|.++|+.|.+ +..||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3555555555555555555555554432 455555566666666666666666666666665556666666666666
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 417 NGLCDKGIV-SDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 417 ~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
.++|+.|+. ++|.++|++|.+.|+.||..+|++++....+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 665555553 4555566666655666666555555544433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-16 Score=130.89 Aligned_cols=200 Identities=10% Similarity=0.014 Sum_probs=151.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011652 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 173 (480)
++++..+..+...+.+.|++++|...|++.....|.+...+..+...+.+.|++++|+..+++..+.. |.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 35777888888899999999999999999999888889999999999999999999999999998875 56778888888
Q ss_pred HHHHcc-----------CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 011652 174 SALCKS-----------KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMV 242 (480)
Q Consensus 174 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (480)
.++... |++++|...+++..+..|.+...+..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888888 888888888888877656677788888888888888888888888887766 5677777788
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 011652 243 DVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEME 297 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (480)
.++...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888877654 4456677777777888888888877776654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-15 Score=130.20 Aligned_cols=226 Identities=9% Similarity=0.044 Sum_probs=171.9
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--cc----HHHH
Q 011652 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR--PT----SFIY 273 (480)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~ 273 (480)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|.+.+++....... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788888888899999999998888776 67788888888888889999988888887764211 11 5677
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..+..++...|++++|...+++..+. .|+. ..+.+.|++++|...++.+...... +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 78888888888888888888888764 3443 3455667788888888887775322 445677777778888
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLE 433 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (480)
|++++|...++++.+..+.+..++..+..+|...|++++|...++++.+... .+...|..+..++...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888888876677778888888888888888888888888776542 256777778888888888888888888
Q ss_pred HHHHc
Q 011652 434 DMIEK 438 (480)
Q Consensus 434 ~~~~~ 438 (480)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-15 Score=131.01 Aligned_cols=224 Identities=10% Similarity=0.025 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC--CC----hhhHHH
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN--PD----IVTYGI 240 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 240 (480)
..+..+...+...|++++|...|++..... .+..++..+..++...|++++|...+++..+.... ++ ..++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 344445555555555555555555554432 44555555555555555555555555555432111 11 244445
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011652 241 MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANK 320 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 320 (480)
+...+...|++++|...+++.... .|+. ..+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 555555555555555555555543 2222 22333445555555555554431 1123344444555555555
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 400 (480)
+++|...++++.+.... +...+..+..++...|++++|...++.+.+..+.+...|..+..++...|++++|...++++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555543221 34445555555555555555555555555544445555555555555555555555555554
Q ss_pred Hh
Q 011652 401 KL 402 (480)
Q Consensus 401 ~~ 402 (480)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-15 Score=125.83 Aligned_cols=208 Identities=13% Similarity=0.024 Sum_probs=108.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011652 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 313 (480)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 34444445555555555555555555554443 33444444555555555555555555555444321 13334444444
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
.+...+. .. +. .....|++++|...+++..+..|.+...+..+..++...|++++|
T Consensus 82 ~~~~~~~------------~~---~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 82 AYVALYR------------QA---ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHH------------TC---SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhh------------hh---hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 4443300 00 00 000116777777777777666666667777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
...|+++.+.+ .+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|++++|.+.+++.
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777776655 466677777777777777777777777776643 234555666666777777777777666654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-14 Score=130.44 Aligned_cols=248 Identities=8% Similarity=0.039 Sum_probs=201.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK-VEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
+..+|+.+...+.+.|++++|+..++++...++.+..+|..+...+...|+ +++|+..|+++.+.. +.+..+|..+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 356788888999999999999999999999999899999999999999997 999999999999876 567889999999
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK-AGRVDE 253 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 253 (480)
++...|++++|+..|+++....+.+...|..+..++.+.|++++|+..++++++.... +...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999999877889999999999999999999999999999987543 67888888888888 566577
Q ss_pred H-----HHHHHHhhhCCCCccHHHHHHHHHHhhccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------
Q 011652 254 A-----LGIVKSMDSTVCRPTSFIYSVLVHTYGVEN--RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN------- 319 (480)
Q Consensus 254 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------- 319 (480)
| +..+++..... +-+...|..+..++...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 47788777764 456778888888888877 578888888887 33 3446777888888887764
Q ss_pred --CHhHHHHHHHHH-HhCCCCCC-hhhHHHHHHHH
Q 011652 320 --KFKNVYRVLKDM-NSKGVAPN-SRTCNIILNGL 350 (480)
Q Consensus 320 --~~~~a~~~~~~~-~~~~~~p~-~~~~~~l~~~~ 350 (480)
..++|..+++++ .+. .|. ...|..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 247888888887 554 333 33444444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-14 Score=136.19 Aligned_cols=368 Identities=10% Similarity=0.001 Sum_probs=246.2
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC-----CHHH
Q 011652 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQY---QIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-----KVEE 149 (480)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~ 149 (480)
..|.+.|+.+... + ++..+..+...+...|+. ++|..+|++.... ++..+..+...+...+ ++++
T Consensus 20 ~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 20 VTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHH-T---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred HHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 3899999887655 2 445556666677777877 8999999988755 5666777777555554 7889
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhh---HHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHH
Q 011652 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK---AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
|+.+|++..+.|. ++ .+..|...|...+..+. +.+.+..... ..+...+..+...|...+.++++......+
T Consensus 93 A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 93 AESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999999998773 33 56667777776655444 4444444433 125667778888888888666666554444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHC
Q 011652 227 VDTGCNPDIVTYGIMVDVLCKAG---RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE----NRIEDAVDTFLEMEKN 299 (480)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~ 299 (480)
.+.-...+...+..+...|...| +.++|++.|++....| +++...+..+...|... +++++|...|++.. .
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~ 245 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P 245 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C
Confidence 33222334458888888999999 9999999999999887 56666656777777655 79999999999988 3
Q ss_pred CCCCCHHHHHHHHHH-H--HHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-----ChHHHHHHHHHHHhcCC
Q 011652 300 GILADVAMYNALIGA-F--CKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG-----ETDEAYRVFRRMIKLCE 371 (480)
Q Consensus 300 ~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~ 371 (480)
| +...+..+... + ...++.++|...|++..+.| +...+..+...|. .| +.++|.++|++.. +
T Consensus 246 g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~ 315 (452)
T 3e4b_A 246 G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G 315 (452)
T ss_dssp G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T
T ss_pred C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C
Confidence 3 55566666666 3 46899999999999999876 5566777777776 45 9999999999887 6
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCC
Q 011652 372 ADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~ 443 (480)
.++..+..|...|.. ..++++|...|++..+.|. ......+...|.. ..+..+|..+|+...+.|. ++
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~ 391 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PE 391 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HH
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HH
Confidence 788888888888877 3499999999999998773 3456666666664 4689999999999998873 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 444 GETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.......+......++.++|.++.++..+.
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 332222233233345677888888877654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-14 Score=125.31 Aligned_cols=249 Identities=10% Similarity=0.008 Sum_probs=182.2
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcc--HHHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT--SFIYSVL 276 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 276 (480)
|...+......+...|++++|...|++..+.... +...+..+..++...|++++|++.+++.......++ ...|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3456667788888899999999999998876432 455788888889999999999999998887431121 3347888
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCh
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET 356 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 356 (480)
..++...|++++|...+++..+... .+..++..+...|...|++++|...+++..+.... +...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHH
Confidence 8888889999999999988877532 25677888888888899999999888888776322 455566666244445688
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCChH
Q 011652 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKR-FIPS------MHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~ 426 (480)
++|...++.+.+..+.+...+..+..++...|+ +++|...++++.+.. ..|+ ...|..+...|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 889888888888777778888888888888887 777888888776541 1123 256777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH
Q 011652 427 DSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 427 ~A~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
+|...++++.+.. +.+......+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~a~~~l~ 262 (272)
T 3u4t_A 239 KADAAWKNILALD-PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHC
T ss_pred HHHHHHHHHHhcC-ccHHHHHHHhh
Confidence 8888888888754 22444444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-14 Score=126.35 Aligned_cols=191 Identities=12% Similarity=0.041 Sum_probs=79.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhh----HHHHHHHhhc
Q 011652 137 IMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKT----YSILLEGWGK 212 (480)
Q Consensus 137 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~ 212 (480)
....+...|++++|+..|+...+.. +.+..++..+..++...|++++|...+++... .+++... |..+...+..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH
Confidence 3334444444444444444444332 22233344444444444444444444444443 1112111 4444444444
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHH
Q 011652 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDT 292 (480)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (480)
.|++++|...|++..+.... +...+..+...|...|++++|.+.+++..... +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443211 33444444445555555555555555444431 22333333333122222345555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHH
Q 011652 293 FLEMEKNGILADVAMYNALIGAFCKANK---FKNVYRVLKDMN 332 (480)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~ 332 (480)
|+++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 55444331 1123344444444444444 444444444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-14 Score=122.89 Aligned_cols=200 Identities=11% Similarity=-0.032 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
+..|..+...+...|++++|.+.|+++....+.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56677777888888888888888888887777777888888888888888888888888887764 45677777778888
Q ss_pred HccCChhhHHHHHHHhhc--CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
...|++++|...++++.. ..+.+...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888776 4444566677777777777777777777777766532 2455666667777777777777
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011652 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777766543 344555666666666667777777776666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-15 Score=131.87 Aligned_cols=246 Identities=9% Similarity=-0.049 Sum_probs=148.1
Q ss_pred hcCChhHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhh
Q 011652 109 KIRQYQIMWDLVNAMRTKRM----LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRK 184 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 184 (480)
..|++++|+..|+.+....+ .+..++..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34667777777777766532 245566677777777777777777777776654 4456677777777777777777
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011652 185 AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST 264 (480)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (480)
|...|++.....+.+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777777776655556677777777777777777777777777664 344444444444555567777777777666554
Q ss_pred CCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChh
Q 011652 265 VCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA---DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSR 341 (480)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 341 (480)
. +++...+ .++..+...++.++|...+....+..... +...+..+...|...|++++|...+++..+.. |+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 2 2333333 35555566666667777766665431110 13455666666666777777777777666542 221
Q ss_pred hHHHHHHHHHhCCChHHHHHHH
Q 011652 342 TCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222233444555555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-14 Score=119.62 Aligned_cols=201 Identities=9% Similarity=-0.028 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
++..|..+...+...|++++|.+.|+.+....+.+..++..+...+...|++++|.+.++.+.+.. +.+..++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666667777777777777777777766666566677777777777777777777777766653 4455666666666
Q ss_pred HHcc-CChhhHHHHHHHhhc--CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011652 176 LCKS-KNVRKAQEIFDCMKD--RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 176 ~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+... |++++|...++++.. ..+.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 6666 677777776666665 2233345566666666666666666666666655421 13455555555566666666
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011652 253 EALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
+|...++.+.......+...+..+...+...|+.+++..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666555443113444444555555555555555555555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-15 Score=126.10 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
..+..|..+...+...|++++|...|+++....+.+..++..+...+...|++++|+..++.+.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4566777777888888888888888888888777778888888888888888888888888887764 456777777888
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
++...|++++|...++++....+.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887775566777777777888888888888888887776532 2556666677777777777777
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011652 255 LGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777766653 344556666666777777777777777766654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-13 Score=116.23 Aligned_cols=224 Identities=11% Similarity=0.037 Sum_probs=145.3
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCccHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYS 274 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (480)
+..++..+...+...|++++|.+.|++..+. -+...+..+...|.. .+++++|.+.+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455556666666666666666666666652 234455556666666 666666666666666554 455566
Q ss_pred HHHHHhhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 011652 275 VLVHTYGV----ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNII 346 (480)
Q Consensus 275 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 346 (480)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 677777777777666653 55666666666666 677777777777766654 34455556
Q ss_pred HHHHHh----CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 347 LNGLIG----RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 347 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
...+.. .+++++|...+++..+. .+...+..+...|.. .+++++|...+++..+.+ +...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 666665 67777777777776653 345666667777777 777777777777777664 35566667777
Q ss_pred HHh----cCChHHHHHHHHHHHHcC
Q 011652 419 LCD----KGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 419 ~~~----~g~~~~A~~~~~~~~~~~ 439 (480)
|.. .+++++|...|++..+.|
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 776 777777777777777654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-13 Score=115.52 Aligned_cols=225 Identities=11% Similarity=-0.020 Sum_probs=198.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011652 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV----ENRIEDAVDTFLEMEKNGILADVAMYN 309 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 309 (480)
+..++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5567778888999999999999999999884 356678888899999 999999999999999875 788888
Q ss_pred HHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011652 310 ALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG----RGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 310 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+. .+...+..+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--NDGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc--CcHHHHHHHH
Confidence 99999999 999999999999999874 67788888999998 99999999999999883 2677888899
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011652 382 KMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 382 ~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
..|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 99998 999999999999999875 66788889999999 999999999999999865 36778888889
Q ss_pred HHh----cCCHHHHHHHHHHHHhhhC
Q 011652 454 LIK----EGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 454 ~~~----~g~~~~a~~~~~~~~~l~~ 475 (480)
+.. .|++++|.+.+++..+++.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 998 9999999999999988764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=119.08 Aligned_cols=197 Identities=10% Similarity=0.029 Sum_probs=104.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 318 (480)
..+...+...|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+...|...
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence 333334444444444444444443332 2233344444444444455555555554444332 12344555555555555
Q ss_pred CCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 319 NKFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+..+.+...+..+...+...|++++|...+
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55666655555555422222 23445555555666666666666666666544555666666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 398 KYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+++.+... .+...+..+...+...|+.++|.++++++.+.
T Consensus 199 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 199 DLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66655432 34555666666666666666666666666654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-14 Score=126.67 Aligned_cols=248 Identities=8% Similarity=-0.078 Sum_probs=151.1
Q ss_pred hcCCChhHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHH
Q 011652 211 GKDPNLPRAREIFREMVDTGCN---PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIE 287 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (480)
...|++++|+..++++.+.... .+...+..+...+...|++++|...++++.... +.+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3456666677776666654211 134455666666667777777777777666653 345666666777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011652 288 DAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMI 367 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 367 (480)
+|...++++.+... .+..++..+...|...|++++|...++++.+. .|+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777777665422 24566666777777777777777777777664 3333333444444455677777777777666
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 368 KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP---SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 368 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
...+++...+. ++..+...++.++|...+++........ +...+..+...|.+.|++++|...|+++.+.. |+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 65555544444 5555666667777777777765542110 14667777777888888888888888877643 322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 011652 445 ETFGKLRKLLIKEGREDVLKFLQ 467 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~ 467 (480)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 222344566667777766654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-14 Score=128.05 Aligned_cols=249 Identities=10% Similarity=0.029 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC-hhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN-VRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
+..+|..+...+...|++++|++.++++++.. +.+..+|+.+..++...|+ +++|+..|++.....+.+...|..+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 35567777778888888888888888888765 5567778888888888886 888888888887766677788888888
Q ss_pred HhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhc-cCCHH
Q 011652 209 GWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV-ENRIE 287 (480)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 287 (480)
++...|++++|+..|+++++.... +...|..+..++...|++++|+..++++.... +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888888775433 56677777777777777777777777777664 4456666666666666 44445
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC------
Q 011652 288 DA-----VDTFLEMEKNGILADVAMYNALIGAFCKAN--KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG------ 354 (480)
Q Consensus 288 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------ 354 (480)
+| +..+++..+... .+...|..+...+...| ++++|...+.++ +. ...+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 55 355555554321 24455555555555555 455565555555 22 1123344455555554442
Q ss_pred ---ChHHHHHHHHHH-HhcCCCCHHHHHHHHHHH
Q 011652 355 ---ETDEAYRVFRRM-IKLCEADADTYTMMIKMF 384 (480)
Q Consensus 355 ---~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~ 384 (480)
..++|.++++++ .+..+.....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 135555555555 343334444444444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-13 Score=115.79 Aligned_cols=203 Identities=8% Similarity=-0.030 Sum_probs=140.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011652 234 DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313 (480)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 313 (480)
+...+..+...+...|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34566667777777888888888887777653 4456677777777777788888888777776643 235666777777
Q ss_pred HHHHc-CCHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 011652 314 AFCKA-NKFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 314 ~~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (480)
.+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++.+.+..+.+...+..+..++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 77777 777777777777776322232 4556666777777777777777777777765666777777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 392 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777766542135566666666667777777777777776653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-14 Score=131.22 Aligned_cols=346 Identities=10% Similarity=0.012 Sum_probs=231.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV---EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
+...+.+.|++++|.++|++..+.+ +..++..+...|...|+. ++|+.+|++..+. ++..+..+...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 5667788999999999999998776 344566677777778887 9999999998864 555666666655555
Q ss_pred C-----ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChh---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011652 180 K-----NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP---RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251 (480)
Q Consensus 180 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 251 (480)
+ ++++|...|++..... +...+..|...|...+..+ ++.+.+......| +......+...|...+.+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 5 7889999999988733 3447778888887665543 4555555555544 455677777888887755
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHhHH
Q 011652 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN---RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA----NKFKNV 324 (480)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a 324 (480)
+++......+.+.-...++..+..+...|...| +.++|+..|++..+.|.. +...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 554444333322211223337888888898899 999999999999988743 566556677777554 699999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH-H--HhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-----CHHHHHHH
Q 011652 325 YRVLKDMNSKGVAPNSRTCNIILNG-L--IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG-----ELEKAFKV 396 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~ 396 (480)
...|++.. . -+...+..+... + ...++.++|.++|++..+. .++..+..|...|. .| ++++|.+.
T Consensus 237 ~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 237 QALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 99999988 3 245566666665 4 5689999999999998873 37788888888887 45 99999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 011652 397 WKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK----EGREDVLKFLQE 468 (480)
Q Consensus 397 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 468 (480)
|++.. .| +...+..+...|.. ..+.++|..+|++..+.|. ......+...|.. ..+.++|..+++
T Consensus 310 ~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99988 43 77788888877776 3489999999999998763 3334455555553 347888988888
Q ss_pred HHHhhh
Q 011652 469 KMNLLV 474 (480)
Q Consensus 469 ~~~~l~ 474 (480)
+..+.+
T Consensus 383 ~A~~~g 388 (452)
T 3e4b_A 383 LAKAQD 388 (452)
T ss_dssp HHHTTC
T ss_pred HHHHCC
Confidence 776543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-14 Score=122.36 Aligned_cols=125 Identities=12% Similarity=0.030 Sum_probs=42.7
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 249 (480)
..+...+...|++++|...|+++....+.+...+..+...+...|++++|...+++..+... .+...+..+...+...|
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHhc
Confidence 33333344444444444444444433333344444444444444444444444444433211 12333333334444444
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 011652 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEM 296 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (480)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 106 ~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp CHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444444444433322 222333333333333344444444443333
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.8e-12 Score=122.34 Aligned_cols=420 Identities=10% Similarity=0.075 Sum_probs=283.3
Q ss_pred hHHHHHhhCCCCCCHHHHHHHHHHHhhCcH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHH
Q 011652 49 VLDTALDQSGIRVSPEIVEDVLEKFRNAGT--LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ---YQIMWDLVNAM 123 (480)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~ 123 (480)
.+...+... +.+......++..+...+. .+..+|+.+.... +.+...|...+..-.+.++ ++.+.++|++.
T Consensus 54 ~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 54 KLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 445555553 4577788888887766544 6888998887664 3688889888888888888 99999999998
Q ss_pred HhCCC--CCHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHh-cCC-CC-CHHHHHHHHHHHHc---------cCC
Q 011652 124 RTKRM--LNVETFCIIMRKYARVQKV--------EEAVYTFNVMQK-YGV-TQ-NLAAFNGLLSALCK---------SKN 181 (480)
Q Consensus 124 ~~~~~--~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~---------~~~ 181 (480)
....+ ++...|...+....+.++. +...++|+.... .|. .+ +...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 88774 7888888888776665543 334577776654 355 44 45678877765542 334
Q ss_pred hhhHHHHHHHhhcCCCCC--hhhHHHHHHHhhcCCC-------------hhHHHHHHHHHHH--cCCC---CC-------
Q 011652 182 VRKAQEIFDCMKDRFIPD--SKTYSILLEGWGKDPN-------------LPRAREIFREMVD--TGCN---PD------- 234 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~-------------~~~a~~~~~~~~~--~~~~---~~------- 234 (480)
++.+..+|++... .|.. ..+|......-...+. ++.|...+.++.. .++. |.
T Consensus 210 ~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 210 VQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 6778888888875 2211 2334332222111111 2223334433321 1111 10
Q ss_pred -------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHH-HHH
Q 011652 235 -------------IVTYGIMVDVLCKAG-------RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAV-DTF 293 (480)
Q Consensus 235 -------------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~ 293 (480)
...|...+..--..+ ..+.+..+|++..... +-....|...+..+...|+.++|. .+|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 122333333222221 1234556777776653 556778888888888889998996 999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC---------CCC------------hhhHHHHHHHHHh
Q 011652 294 LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV---------APN------------SRTCNIILNGLIG 352 (480)
Q Consensus 294 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~~~~ 352 (480)
++.... ++.+...|-..+....+.|+++.|..+|+.+..... .|+ ...|...+....+
T Consensus 368 ~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 998864 445666777788888899999999999999876310 132 2357777787788
Q ss_pred CCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011652 353 RGETDEAYRVFRRMIKL-CEADADTYTMMIKMFCQGG-ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 353 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 430 (480)
.|+.+.|..+|.++.+. .......|...+..-.+.+ +.+.|.++|+...+. ++-+...|..++......|+.+.|..
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999999875 3344555655544444544 589999999998876 33467777888888888899999999
Q ss_pred HHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 431 LLEDMIEKGIRP--SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 431 ~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+|++++.....+ ....|...+..-.+.|+.+.+..+.+++.+..+.
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999998764322 3456888888888999999999999999887654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-14 Score=131.28 Aligned_cols=303 Identities=16% Similarity=0.084 Sum_probs=160.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChhhHHHHHHHhhc---CC---CC
Q 011652 129 LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN----LAAFNGLLSALCKSKNVRKAQEIFDCMKD---RF---IP 198 (480)
Q Consensus 129 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~---~~ 198 (480)
.....+......+...|++++|+..|+.+.+.+ +.+ ..++..+...+...|++++|...+++... .. +.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345556666777777777777777777777653 223 24566666777777777777777776543 10 11
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC-------------HHHHHHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCN-PD----IVTYGIMVDVLCKAGR-------------VDEALGIVKS 260 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~ 260 (480)
...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ ++++...
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~--- 162 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA--- 162 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH---
Confidence 2344555566666666666666666665542100 01 1233444444444444 0000000
Q ss_pred hhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 011652 261 MDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEK----NGILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKG 335 (480)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 335 (480)
+++|...+++..+ .+..+ ...++..+...|...|++++|...+++..+..
T Consensus 163 -------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 163 -------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4444444444321 11000 12345555556666666666666666554321
Q ss_pred C-CCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 011652 336 V-APN----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCE--AD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK- 403 (480)
Q Consensus 336 ~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 403 (480)
. .++ ...+..+...+...|++++|...+++.....+ .+ ..++..+...|...|++++|...+++....
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 011 12555566666667777777777766654111 11 445666677777777777777777766532
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCH
Q 011652 404 ---RFIP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRP-SGETFGKLRKLLIKEGRE 460 (480)
Q Consensus 404 ---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 460 (480)
+..+ ...++..+...|...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1000 1345666667777777777777777776532 1111 123445555566555543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=133.23 Aligned_cols=300 Identities=12% Similarity=0.003 Sum_probs=178.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCC-C
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN----VETFCIIMRKYARVQKVEEAVYTFNVMQKY----GVTQ-N 165 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 165 (480)
.....+......+...|++++|...|+++....+.+ ..++..+...+...|++++|...+++..+. +-+| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 566777888889999999999999999998877644 357888899999999999999999887543 2112 2
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHhhcCCC--CC----hhhHHHHHHHhhcCCC--------------------hhHH
Q 011652 166 LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFI--PD----SKTYSILLEGWGKDPN--------------------LPRA 219 (480)
Q Consensus 166 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~--------------------~~~a 219 (480)
..++..+...+...|++++|...+++.....+ ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45678888899999999999999988765111 12 4478888888988898 7888
Q ss_pred HHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-Cc----cHHHHHHHHHHhhccCCHHHH
Q 011652 220 REIFREMVDT----GCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RP----TSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 220 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a 289 (480)
...+++..+. +..+ ...++..+...+...|++++|...+++...... .+ ...++..+..++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777765432 1011 123455555666666666666666665543210 00 012344444445555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
...+++..+... ..+..+ ...++..+...+...|++++|...++.+.+
T Consensus 247 ~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 247 SEYYKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 555444332100 000000 023344445555555555555555555444
Q ss_pred c--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCh
Q 011652 369 L--CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFI-PSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 369 ~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~ 425 (480)
. ...+ ..++..+...|...|++++|.+.+++..+. +.. ....++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1 0111 344555666666666666666666654432 111 1234455555555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-14 Score=132.80 Aligned_cols=276 Identities=13% Similarity=0.048 Sum_probs=123.8
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhcCCCCCh----hhHHHHHHHhhcCCChhHHHHHHHHHHHc----C-CCCChhhHHH
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCMKDRFIPDS----KTYSILLEGWGKDPNLPRAREIFREMVDT----G-CNPDIVTYGI 240 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 240 (480)
..+...+...|++++|...|++.....+.+. .++..+...+...|++++|...+++..+. + .......+..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3344455556666666666665554322232 34555555555556666666655555432 0 0112233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC-----CCccHHHHHHHHHHhhccCC----------HHHHHHHHHHHHHCCCCCCH
Q 011652 241 MVDVLCKAGRVDEALGIVKSMDSTV-----CRPTSFIYSVLVHTYGVENR----------IEDAVDTFLEMEKNGILADV 305 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~ 305 (480)
+...|...|++++|...+++..... .+....++..+...|...|+ +++|...
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------------- 198 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------------- 198 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------------
Confidence 4555555555555555555543320 01112234444444444444 0000000
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC--CCC----H
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSK----GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLC--EAD----A 374 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~ 374 (480)
+++|...+.+..+. +..+ ....+..+...+...|++++|...+++..+.. ..+ .
T Consensus 199 ---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 199 ---------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 44444444443221 0000 11234444445555555555555555544410 011 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCH
Q 011652 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRF----I-PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GI-RPSG 444 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~ 444 (480)
.++..+...|...|++++|...+++...... . ....++..+...+...|++++|..+++++.+. +. ....
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 2445555555555555555555555443210 0 01234455555555566666666655555432 10 0012
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 445 ETFGKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.++..+..++.+.|++++|.+.+++..++
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 24445555555666666666666555544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=6e-12 Score=112.44 Aligned_cols=236 Identities=10% Similarity=0.050 Sum_probs=160.8
Q ss_pred hhhHHHHHHHhhcC----CCh----hHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCH-------HHHHHH
Q 011652 200 SKTYSILLEGWGKD----PNL----PRAREIFREMVDTGCNPDIVTYGIMVDVLCK-------AGRV-------DEALGI 257 (480)
Q Consensus 200 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~ 257 (480)
...|...+..-.+. ++. ++|..+|++.+... +-+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666665443 233 57777888877643 2356677777766653 4765 788888
Q ss_pred HHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 011652 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVA-MYNALIGAFCKANKFKNVYRVLKDMNSKGV 336 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 336 (480)
|++....-.+.+...|..++..+...|++++|..+|++..+.... +.. .|..++..+.+.|++++|..+|++..+.+.
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 888877322445667777888888888888888888888764221 233 677777777788888888888888877532
Q ss_pred CCChhhHHHHHHHHH-hCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHH
Q 011652 337 APNSRTCNIILNGLI-GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-FIP--SMHTF 412 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~ 412 (480)
. +...|........ ..|+.++|..+|+.+.+..+.+...|..++..+.+.|++++|..+|++..... .+| ....|
T Consensus 166 ~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 T-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp C-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 2 3333433332222 36788888888888877666677788888888888888888888888887752 333 45677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 413 SVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
..++....+.|+.++|..+++++.+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777778888888888887764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-14 Score=131.58 Aligned_cols=278 Identities=12% Similarity=0.041 Sum_probs=177.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChhhHHHHHHHhhcC------CCCC
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL----AAFNGLLSALCKSKNVRKAQEIFDCMKDR------FIPD 199 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~ 199 (480)
....+..+...+...|++++|+..|+++.+.+ +.+. .++..+..+|...|++++|...+++.... .+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34455667788899999999999999998874 3343 47888899999999999999999988652 2334
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-----------------HHHHHHH
Q 011652 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTG-----CNPDIVTYGIMVDVLCKAGR-----------------VDEALGI 257 (480)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~ 257 (480)
..++..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 5678889999999999999999999986531 11124567788888999999 7777777
Q ss_pred HHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 011652 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (480)
+++.... ...... ......++..+...|...|++++|...+++..+....
T Consensus 206 ~~~al~~----------------------------~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 206 YQENLKL----------------------------MRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH----------------------------HHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 7665431 111100 0001223333444444444444444444444332000
Q ss_pred -CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 011652 338 -PN----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCE------ADADTYTMMIKMFCQGGELEKAFKVWKYMKLK--- 403 (480)
Q Consensus 338 -p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 403 (480)
++ ...+..+...+...|++++|...++++....+ ....++..+...|...|++++|...+++....
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00 12455555666666666666666666554111 11345666777777777777777777766542
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 404 -RF-IPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 404 -~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+. .....++..+...|...|++++|...+++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 10 011346666777777778888888877777653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-12 Score=112.49 Aligned_cols=219 Identities=8% Similarity=0.005 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 114 QIMWDLVNAMRTKRMLNVETFCIIMRKYAR-------VQKV-------EEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 114 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
++|..+|++.....+.++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 577778888877777778888877777653 4665 78888888887731144566777888888888
Q ss_pred CChhhHHHHHHHhhcCCCCChh-hHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSK-TYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLC-KAGRVDEALGI 257 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~ 257 (480)
|++++|..+|++..+..+.+.. +|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++|.++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888774343444 777788888788888888888888776532 23334433332221 25788888888
Q ss_pred HHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 258 VKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILA--DVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 192 ~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 192 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88776653 3456677777777778888888888888877752 233 4567777777777788888888888777765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.9e-14 Score=126.26 Aligned_cols=269 Identities=15% Similarity=0.041 Sum_probs=155.9
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CccHHHHHHH
Q 011652 206 LLEGWGKDPNLPRAREIFREMVDTGCNPD----IVTYGIMVDVLCKAGRVDEALGIVKSMDST----VC-RPTSFIYSVL 276 (480)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 276 (480)
....+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++.... +. +....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 334444455555555555554443211 1 133444445555555555555555443321 10 1113344555
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HhHHHHHHHHH
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGI-LAD----VAMYNALIGAFCKANK--------------------FKNVYRVLKDM 331 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~ 331 (480)
...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 5555566666666665555432100 011 2345555566666666 66666666654
Q ss_pred HhC----CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 332 NSK----GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYM 400 (480)
Q Consensus 332 ~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 400 (480)
... +..+ ....+..+...+...|++++|...++++.+. ..++ ..++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 331 1111 1235666677777788888888888777651 1111 236777888888888988888888877
Q ss_pred HhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011652 401 KLKRFI-PS----MHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIR-PSGETFGKLRKLLIKEGREDVLKFLQEKM 470 (480)
Q Consensus 401 ~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 470 (480)
...... ++ ..++..+...+...|++++|...++++.+. +-. ....++..+...+.+.|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 642100 11 456777888888899999999998888643 111 11345677888889999999999999988
Q ss_pred HhhhC
Q 011652 471 NLLVK 475 (480)
Q Consensus 471 ~~l~~ 475 (480)
.++..
T Consensus 330 ~~~~~ 334 (338)
T 3ro2_A 330 LEISR 334 (338)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 87654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-13 Score=122.08 Aligned_cols=233 Identities=11% Similarity=0.003 Sum_probs=157.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC----CCCc-cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC--CC----CCHHHHH
Q 011652 241 MVDVLCKAGRVDEALGIVKSMDST----VCRP-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG--IL----ADVAMYN 309 (480)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~~ 309 (480)
....+...|++++|...+++.... +-.+ ...++..+..+|...|+++.|...+.+..+.. .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556677777777777776543 1111 23556677777777777777777777765321 00 1134677
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHh-----cC-CCCHHHHH
Q 011652 310 ALIGAFCKANKFKNVYRVLKDMNSKGVA-PN----SRTCNIILNGLIGRGETDEAYRVFRRMIK-----LC-EADADTYT 378 (480)
Q Consensus 310 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~ 378 (480)
.+...|...|++++|...+.+..+.... ++ ..++..+..+|...|++++|...+++..+ +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888777653111 11 23677788888888999999988888877 34 44567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKLK----RFIPSMHTFSVLINGLCDKGI---VSDSCVLLEDMIEKGIRPS-GETFGKL 450 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 450 (480)
.+...|...|++++|...+++..+. +-+.....+..+...+...|+ .++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888899999999999988877643 111122335667777888888 67777777665 22222 3356678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 451 RKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 451 ~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
...|...|++++|.+.+++..++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88899999999999999988877543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=107.21 Aligned_cols=168 Identities=14% Similarity=0.050 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
-++.+|..+...+.+.|++++|++.|++..+.+|.+..++..+...+...|++++|+..+....... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3667788888888888888888888888887777777888888888888888888888888777654 455666777777
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
.+...++++.|...+.+.....+.+...+..+...+.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHH
Confidence 777788888888888877776566777777777888888888888888887776532 2566677777777777777777
Q ss_pred HHHHHHhhhC
Q 011652 255 LGIVKSMDST 264 (480)
Q Consensus 255 ~~~~~~~~~~ 264 (480)
++.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777777664
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-12 Score=105.31 Aligned_cols=166 Identities=15% Similarity=0.165 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011652 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
++.+|..+...|...|++++|+..|++..+... .+..++..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 455666666677777777777777776665432 25566666666666677777777666666654322 3445555556
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
.+...++++.|...+.......+.+...+..+..+|.+.|++++|.+.|++..+... .+..+|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHH
Confidence 666666666676666666665566666666666666666677777666666665442 2556666666666666666666
Q ss_pred HHHHHHHHH
Q 011652 429 CVLLEDMIE 437 (480)
Q Consensus 429 ~~~~~~~~~ 437 (480)
...|+++++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666665
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-13 Score=120.61 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHH
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCE--AD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RF-IPSMH 410 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~ 410 (480)
.+..+...+...|++++|...+++.....+ .+ ..++..+...|...|++++|...+++.... +. .....
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 444455555555566666555555544111 11 345566666666777777777766665432 10 01134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
++..+...|...|++++|...++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5666777777777777777777777653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=120.60 Aligned_cols=229 Identities=7% Similarity=-0.027 Sum_probs=157.5
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCccHHHHH
Q 011652 206 LLEGWGKDPNLPRAREIFREMVDT----GCNP-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV------CRPTSFIYS 274 (480)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~ 274 (480)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..... .+....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566677777777777777642 1111 23456667777777788887777777765421 011234667
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CC-CCChhhHH
Q 011652 275 VLVHTYGVENRIEDAVDTFLEMEKNGIL-AD----VAMYNALIGAFCKANKFKNVYRVLKDMNSK----GV-APNSRTCN 344 (480)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~ 344 (480)
.+..+|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7778888888888888888776532100 11 246777888888899999999988887762 22 22355678
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIKL-----CEADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIP-SMHTFSVL 415 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l 415 (480)
.+...+...|++++|...+++..+. .+.....+..+...|...|+ +++|..++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888889999999999999888761 22223345677888888888 77777777765 2222 23567778
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 011652 416 INGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999998874
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=124.00 Aligned_cols=213 Identities=8% Similarity=-0.038 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011652 251 VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI-EDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
+++++..++...... +.+...+..+..++...|++ ++|+..|++..+... .+...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566666555432 34566677777777777777 777777777766532 246677777777888888888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhC---------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc--------CCHHH
Q 011652 330 DMNSKGVAPNSRTCNIILNGLIGR---------GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG--------GELEK 392 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 392 (480)
+..+.. |+...+..+...+... |++++|...++++.+..+.+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 777753 5556777777777777 8888888888888776677778888888888777 77888
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 393 AFKVWKYMKLKRFI--PSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 393 a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
|.+.|++..+.... -+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888887775420 267778888888888888888888888887654 2345567777777777787777776443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=123.17 Aligned_cols=213 Identities=11% Similarity=0.017 Sum_probs=143.3
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCCh-hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011652 182 VRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNL-PRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKS 260 (480)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (480)
++++...++......+.+...+..+...+...|++ ++|++.|++..+.... +...|..+..+|...|++++|.+.+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555554455666677777777777777 7777777777664322 456677777777777777777777777
Q ss_pred hhhCCCCccHHHHHHHHHHhhcc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHhH
Q 011652 261 MDSTVCRPTSFIYSVLVHTYGVE---------NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA--------NKFKN 323 (480)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~ 323 (480)
..+.. |+...+..+..++... |++++|...+++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 76653 4456667777777777 77777777777776653 22566777777777776 77777
Q ss_pred HHHHHHHHHhCCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 324 VYRVLKDMNSKGVA--PNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 324 a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 398 (480)
|...|++..+.... -+...+..+..+|...|++++|.+.|+++.+..+.+...+..+..++...|++++|.+.+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777764220 2556677777777777777777777777777666667777777777777777777766544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-10 Score=110.13 Aligned_cols=392 Identities=9% Similarity=0.054 Sum_probs=270.9
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC---HHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK---VEEAVYTFN 155 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~ 155 (480)
..+..|+.....++ .|...|..++..+.+.+.++.+..+|+++....|.+...|...+..-.+.|+ ++.+.++|+
T Consensus 50 d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 45555655544444 5999999999999999999999999999999988899999999999888898 999999999
Q ss_pred HHHhcC-CCCCHHHHHHHHHHHHccCCh--------hhHHHHHHHhhc--CC--CCChhhHHHHHHHhhc---------C
Q 011652 156 VMQKYG-VTQNLAAFNGLLSALCKSKNV--------RKAQEIFDCMKD--RF--IPDSKTYSILLEGWGK---------D 213 (480)
Q Consensus 156 ~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~--~~--~~~~~~~~~l~~~~~~---------~ 213 (480)
+..... .+|++..|...+....+.++. +...++|+.... +. ..+...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998864 248999999888776665554 334578887665 33 3345788888876543 3
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-------------CHHHHHHHHHHhhhC--CC----C-------
Q 011652 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG-------------RVDEALGIVKSMDST--VC----R------- 267 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------------~~~~a~~~~~~~~~~--~~----~------- 267 (480)
++++.+..+|++.+......-..+|......-...+ +++.|...+.++... ++ +
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 356778899999885311111233433222211111 123344444432210 11 1
Q ss_pred ----c-----c---HHHHHHHHHHhhccC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH-HH
Q 011652 268 ----P-----T---SFIYSVLVHTYGVEN-------RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY-RV 327 (480)
Q Consensus 268 ----~-----~---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~ 327 (480)
| + ...|...+..--..+ ..+.+..+|++.... .+-....|-..+..+...|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 0 123444444322222 123456678887764 3347788888888888899999996 99
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcC----------CC------------CHHHHHHHHHHHH
Q 011652 328 LKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLC----------EA------------DADTYTMMIKMFC 385 (480)
Q Consensus 328 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~------------~~~~~~~l~~~~~ 385 (480)
+++.... ++.+...+...+......|+++.|.++|+.+.... .| ...+|...++...
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9999875 33355567778888889999999999999988631 13 2347888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK-GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 464 (480)
+.|+.+.|.++|..+.+....+....|...+..-.+. ++.+.|.++|+..++. .+.+...+...+......|+.+.|+
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999998761112344554433333344 4589999999999976 4456777888899888999999999
Q ss_pred HHHHHHHhhhC
Q 011652 465 FLQEKMNLLVK 475 (480)
Q Consensus 465 ~~~~~~~~l~~ 475 (480)
.++++..+..+
T Consensus 525 ~lferal~~~~ 535 (679)
T 4e6h_A 525 SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTTTSS
T ss_pred HHHHHHHHhcC
Confidence 99999876543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=121.96 Aligned_cols=249 Identities=13% Similarity=0.082 Sum_probs=121.6
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDT-------GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSF 271 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (480)
+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...+++.....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 3445556666666666666666666665542 111123444555555555556655555555544320
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------CCCC-ChhhHH
Q 011652 272 IYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK------GVAP-NSRTCN 344 (480)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~ 344 (480)
........+....++..+...|...|++++|...++++.+. +..| ....+.
T Consensus 100 ----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 100 ----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp ----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 00000000111233444444444455555555554444332 1111 223455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIKL--------CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-------RFIPS- 408 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~- 408 (480)
.+...+...|++++|..+++++.+. .+....++..+..+|...|++++|.+.++++.+. ...+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 5555666666666666666665542 2222345666667777777777777777666542 01111
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 409 ------MHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 409 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
...+..+...+...+.+.++...++...... .....++..+..++.+.|++++|.+.+++..++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122222333444556666666666665432 234556778888899999999999999988887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-11 Score=113.95 Aligned_cols=229 Identities=10% Similarity=0.012 Sum_probs=142.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCC-----CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC----CC-CC-CHHHHHHH
Q 011652 243 DVLCKAGRVDEALGIVKSMDSTVC-----RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN----GI-LA-DVAMYNAL 311 (480)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l 311 (480)
..+...|++++|+..+++...... .....++..+..+|...|+++.|...+.+..+. +. .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345566677777776666654210 112345566666677777777777766665431 10 10 13456666
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHh-----cCCCCHHHHHHHH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSK----GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIK-----LCEADADTYTMMI 381 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~ 381 (480)
...|...|++++|...+.+..+. +..+ ...++..+..++...|++++|...+++... +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 77777777777777777766542 1111 123566677777778888888888877776 4444566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 011652 382 KMFCQGGELEKAFKVWKYMKLKR----FIPSMHTFSVLINGLCDKGI---VSDSCVLLEDMIEKGIRPS-GETFGKLRKL 453 (480)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 453 (480)
..|.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|+..+++. +..|+ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence 88888888888888888776531 11123345555556666677 66666666652 22222 2345567788
Q ss_pred HHhcCCHHHHHHHHHHHHhhh
Q 011652 454 LIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~l~ 474 (480)
|...|++++|.+.+++..++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 888888888888888876653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-13 Score=119.58 Aligned_cols=176 Identities=14% Similarity=0.062 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhH
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKY-------GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 203 (480)
..++..+...+...|++++|..+++++.+. ..+....++..+..++...|++++|...+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 445555666666666666666666655542 112223445555555555555555555555543210
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------C-CCccHHHHHHH
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST------V-CRPTSFIYSVL 276 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 276 (480)
.............++..+...+...|++++|...+++..+. + .+.....+..+
T Consensus 100 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 100 --------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 00000000112233444444555555555555555444332 1 11123345555
Q ss_pred HHHhhccCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKN------GILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNS 333 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 333 (480)
...+...|++++|...++++.+. +..| ...++..+...|...|++++|...++++.+
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666555432 1111 233455566666667777777776666654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-11 Score=110.79 Aligned_cols=229 Identities=5% Similarity=-0.060 Sum_probs=157.9
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-C-ccHHHH
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGC-NPD----IVTYGIMVDVLCKAGRVDEALGIVKSMDST----VC-R-PTSFIY 273 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~-~~~~~~ 273 (480)
.....+...|++++|...|++..+... .++ ..++..+...|...|++++|...+++.... +. . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888877764311 112 345666777788888888888887776542 10 1 124566
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-----CCCCCChhhH
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKN----GILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNS-----KGVAPNSRTC 343 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~ 343 (480)
..+..+|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+ .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 77788888888888888888776542 1111 134677788888889999999998888876 4222 35677
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHH
Q 011652 344 NIILNGLIGRGETDEAYRVFRRMIKL-----CEADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIP-SMHTFSV 414 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~ 414 (480)
..+...+.+.|++++|...+++..+. .+.....+..+...|...++ +.+|...+++. +..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 78888889999999999999988872 22234456666667777777 77777777652 2222 2346667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+...|...|++++|...|+++.+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999998864
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-11 Score=98.53 Aligned_cols=168 Identities=11% Similarity=0.044 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+..+.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3445555666666777777777766655422 245566666666777777777777777776655666777777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011652 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 465 (480)
..|++++|.+.++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777766532 356667777777777777777777777777653 3356667777777777777777777
Q ss_pred HHHHHHhhhCC
Q 011652 466 LQEKMNLLVKE 476 (480)
Q Consensus 466 ~~~~~~~l~~~ 476 (480)
.+++..++.+.
T Consensus 166 ~~~~~~~~~~~ 176 (186)
T 3as5_A 166 HFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHcCCC
Confidence 77777666543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-11 Score=99.96 Aligned_cols=165 Identities=13% Similarity=0.021 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...|..+...+...|++++|...++.+....+.+..++..+...+...|++++|...++.+.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566667777777888888888877776666667777777777777788888887777777654 44566777777777
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALG 256 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 256 (480)
...|++++|.+.++++....+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777766555566677777777777777777777777766553 2245566666667777777777777
Q ss_pred HHHHhhh
Q 011652 257 IVKSMDS 263 (480)
Q Consensus 257 ~~~~~~~ 263 (480)
.++...+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-10 Score=106.49 Aligned_cols=299 Identities=13% Similarity=0.052 Sum_probs=192.7
Q ss_pred HHHHHHHHHccCChhhHHHHHHHhhcCCCCCh-----hhHHHHHHHhhcCCChhHHHHHHHHHHHcCCC-CCh----hhH
Q 011652 169 FNGLLSALCKSKNVRKAQEIFDCMKDRFIPDS-----KTYSILLEGWGKDPNLPRAREIFREMVDTGCN-PDI----VTY 238 (480)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~ 238 (480)
.......+...|++++|...+++.....+++. .+++.+...+...|++++|...+++....... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33444566678999999999888766433332 14566777788889999999998887643211 121 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC----CCC--c-cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCC----CCHHH
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSMDST----VCR--P-TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL----ADVAM 307 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~ 307 (480)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56677788889999999888887542 211 2 2345666777888889999999888887653221 12356
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhCCChHHHHHHHHHHHhcCCC----CHHHH
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS-RTCN-----IILNGLIGRGETDEAYRVFRRMIKLCEA----DADTY 377 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 377 (480)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++......+. ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 677777888889999998888887653212111 1121 2233466888888888888887662221 13356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011652 378 TMMIKMFCQGGELEKAFKVWKYMKLK----RFIPSM-HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRK 452 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 452 (480)
..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++.....-. ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHH
Confidence 67778888888888888888876542 222222 25666677788888888888888888753100 11223
Q ss_pred HHHhcCCHHHHHHHHHHHHhhhC
Q 011652 453 LLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 453 ~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+...| +....+++.+.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHcc--HHHHHHHHHHHhCCC
Confidence 344444 556666666655443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-10 Score=106.23 Aligned_cols=262 Identities=13% Similarity=-0.003 Sum_probs=142.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChhhHHHHHHHhhcC--CCCC----hhhHHHHHHHh
Q 011652 141 YARVQKVEEAVYTFNVMQKYGVTQNLA----AFNGLLSALCKSKNVRKAQEIFDCMKDR--FIPD----SKTYSILLEGW 210 (480)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~ 210 (480)
+...|++++|...++.........+.. +++.+...+...|++++|...+++.... ...+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 334455555555554444332111111 2333444444555555555555544330 0011 12234455555
Q ss_pred hcCCChhHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----ccHHHHHHHHHH
Q 011652 211 GKDPNLPRAREIFREMVDT----GCN--P-DIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR----PTSFIYSVLVHT 279 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~ 279 (480)
...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 5666666666666555432 111 1 1233444556666677777777776665443211 123455666677
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHHcCCHhHHHHHHHHHHhCCCCCC---hhhHHHHHHHH
Q 011652 280 YGVENRIEDAVDTFLEMEKNGILA--DVAMYN----ALIGAFCKANKFKNVYRVLKDMNSKGVAPN---SRTCNIILNGL 350 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~ 350 (480)
+...|++++|...+++.......+ ...... ..+..+...|++++|...+.+.......+. ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 777778887777777765321111 111111 223346678888888888877765432211 12345667778
Q ss_pred HhCCChHHHHHHHHHHHhc-----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 351 IGRGETDEAYRVFRRMIKL-----CEADA-DTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
...|++++|...++..... .+++. ..+..+..++...|+.++|...+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888888888887651 11122 3566677888888999999998888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-11 Score=120.73 Aligned_cols=167 Identities=11% Similarity=0.016 Sum_probs=150.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++.+|+.+...+.+.|++++|++.|++..+..+.+..+|..+...|.+.|++++|++.|++..+.. +.+..+|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4678999999999999999999999999999988889999999999999999999999999998875 557889999999
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEA 254 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 254 (480)
++...|++++|++.|++..+..+.+...|+.+...+.+.|++++|++.|++.++.... +...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999998866778899999999999999999999999999886432 577889999999999999999
Q ss_pred HHHHHHhhh
Q 011652 255 LGIVKSMDS 263 (480)
Q Consensus 255 ~~~~~~~~~ 263 (480)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-11 Score=117.59 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=95.5
Q ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011652 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
+..+++.+..+|.+.|++++|+..|++..+... -+..++..+..+|.+.|++++|...|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 345566666666666666666666666555421 23555566666666666666666666666554222 3445555666
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
++...|++++|++.|+++.+..+.+...|..+..+|...|++++|.+.|++..+.... +...|..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666665555555566666666666666666666666665554322 445555566666666666666
Q ss_pred HHHHHHHHH
Q 011652 429 CVLLEDMIE 437 (480)
Q Consensus 429 ~~~~~~~~~ 437 (480)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-10 Score=98.63 Aligned_cols=198 Identities=12% Similarity=-0.035 Sum_probs=156.4
Q ss_pred ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011652 268 PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347 (480)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 347 (480)
.++..+......+...|++++|...|++..+....++...+..+..++...|++++|...+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888888999999999999999999988754467777777889999999999999999999986433 566788899
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADA-------DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLIN 417 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 417 (480)
.++...|++++|...+++..+..+.+. ..|..+...+...|++++|.+.++++.+.+ |+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 999999999999999999998777777 568888889999999999999999998764 54 467777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+|...| ...++++...+ ..+...+.... ....|.+++|...+++..++.+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 776544 44456665543 23444444433 34457789999999999888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-10 Score=96.44 Aligned_cols=197 Identities=10% Similarity=-0.027 Sum_probs=156.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011652 233 PDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALI 312 (480)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 312 (480)
.|...+......+...|++++|+..|++......+++...+..+..++...|++++|+..+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888889999999999999999999998764377788888999999999999999999999986432 567888899
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAPNS-------RTCNIILNGLIGRGETDEAYRVFRRMIKLCEA--DADTYTMMIKM 383 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 383 (480)
..|...|++++|...+++..+.... +. ..|..+...+...|++++|...++++.+..+. +...+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999886332 34 45777788889999999999999999986566 67888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 384 FCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
|...| ..+++++...+. .+...|.... ....+.+++|...+++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 86544 444555555432 2444554443 334567899999999999854
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-11 Score=105.61 Aligned_cols=228 Identities=14% Similarity=0.095 Sum_probs=156.8
Q ss_pred HhcCCHHHHHHHHHHhhh-------CCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 011652 246 CKAGRVDEALGIVKSMDS-------TVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN------GI-LADVAMYNAL 311 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 311 (480)
...|++++|+.++++... ...+....++..+..++...|++++|...+++..+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 346677777666666544 232345677888999999999999999999998753 11 2235678888
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhc--------CCCCHHH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSK------GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKL--------CEADADT 376 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 376 (480)
...|...|++++|...+.+..+. ...| ....+..+...+...|++++|...++++.+. .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988764 1112 3567788888999999999999999998873 3334567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHH------HHHHHHHHcCCCC
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKLK-------RFIPS-MHTFSVLINGLCDKGIVSDSC------VLLEDMIEKGIRP 442 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~------~~~~~~~~~~~~p 442 (480)
+..+..+|...|++++|...++++.+. ...+. ...|..+...+...+....+. ..++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999988753 11122 223443433343333322222 22221110 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
...++..+..++...|++++|.+++++..++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 23457788999999999999999999987764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-11 Score=104.50 Aligned_cols=226 Identities=11% Similarity=0.013 Sum_probs=160.8
Q ss_pred hcCCChhHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CccHHHHHHH
Q 011652 211 GKDPNLPRAREIFREMVDT-------GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDST------VC-RPTSFIYSVL 276 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 276 (480)
...|++++|..++++..+. ..+....++..+...|...|++++|...+++.... +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888877642 11224667888999999999999999999998754 21 3346678889
Q ss_pred HHHhhccCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------CCCC-Chhh
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKN------G-ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK------GVAP-NSRT 342 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~ 342 (480)
..++...|++++|...+.+..+. . .+....++..+...|...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998754 1 1223567888889999999999999999998764 1122 3457
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHhCCCCC
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKL---------CEADADTYTMMIKMFCQGGELEKA------FKVWKYMKLKRFIP 407 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a------~~~~~~~~~~~~~p 407 (480)
+..+...+...|++++|...++++.+. .+.....|..+...+...+....+ ...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999998762 222333444444444443333322 222222211 1122
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
...++..+...|...|++++|..+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346788899999999999999999999875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=8.4e-10 Score=97.58 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=109.8
Q ss_pred HHHhcCCHHHHHHHHHHhhhC----CCCcc-HHHHHHHHHHhhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 011652 244 VLCKAGRVDEALGIVKSMDST----VCRPT-SFIYSVLVHTYGVENRIEDAVDTFLEMEKN----GILA-DVAMYNALIG 313 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~ 313 (480)
.|...|++++|.+.+.+.... +.++. ..+|+.+..+|...|++++|+..+++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666555332 21111 345666666666777777777666665432 1000 1345667777
Q ss_pred HHHHc-CCHhHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCH-------HHHHHH
Q 011652 314 AFCKA-NKFKNVYRVLKDMNSKGVAP-N----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA-------DTYTMM 380 (480)
Q Consensus 314 ~~~~~-~~~~~a~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l 380 (480)
.|... |++++|...+++..+..... + ..++..+...+...|++++|...++++.+..+.+. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77775 88888888887776531110 1 23566677777788888888888887776322211 145667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcCChHHHHHHHHHH
Q 011652 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMH------TFSVLINGLC--DKGIVSDSCVLLEDM 435 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~ 435 (480)
..++...|++++|...+++..+.. |+.. .+..++.++. ..+++++|+..|+++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 777777788888888887776643 3211 2333444443 345566666666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-09 Score=90.48 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCC-----CHHHHHH
Q 011652 237 TYGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILA-----DVAMYNA 310 (480)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 310 (480)
++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.+++|.+. .| +..+...
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHH
Confidence 333444445555555555555554433321 123334444445555555555555555555442 22 1233333
Q ss_pred HHHHHH--HcC--CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc----------CCCCHHH
Q 011652 311 LIGAFC--KAN--KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL----------CEADADT 376 (480)
Q Consensus 311 li~~~~--~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~ 376 (480)
+..++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+. .+.++.+
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 333321 112 455555555555443 222222222333445555555555555543331 1334444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
+..++......|+ +|.+++.++.+.
T Consensus 258 LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 258 LANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 4334333333443 445555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-08 Score=88.30 Aligned_cols=250 Identities=8% Similarity=0.008 Sum_probs=166.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRM-LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
|+-..-.|++..++.-.. +..+ ........+.+++...|+++.. ..-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence 344455788888777333 2223 3344555566888888877642 1123444444444433 3322
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC-NPDIVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
|...|++.....+++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 67778777664456666677888888999999999999998876553 125667778888999999999999999999
Q ss_pred hhCCCCc-----cHHHHHHHHHHh--hc--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011652 262 DSTVCRP-----TSFIYSVLVHTY--GV--ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMN 332 (480)
Q Consensus 262 ~~~~~~~-----~~~~~~~l~~~~--~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 332 (480)
.+. .| +..+...++.++ .. .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|...++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 775 45 345555555552 22 34899999999998765 3443333444458888999999999998766
Q ss_pred hCC-----C----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHH
Q 011652 333 SKG-----V----APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADT 376 (480)
Q Consensus 333 ~~~-----~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 376 (480)
+.- . +-+..++..++......|+ +|.++++++.+..|.++.+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 531 0 2255666566656666676 7888888888866666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.7e-10 Score=84.96 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.|..+...+...|++++|..+++.+....+.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 455566666677777777777777666555566666666666777777777777776666554 4455566666666666
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
.|++++|...++++....+.+..++..+...+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666554444555666666666666666666666666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-09 Score=82.54 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=71.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+..+...+...|++++|..+++.+.+..+.+...+..+...+...|++++|.+.++++...+. .+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHh
Confidence 334444555555555555555555554444555555555555555666666666655554331 2444555555556666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 423 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
|++++|..+++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 66666666666655432 2234555555666666666666666666655544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-09 Score=94.74 Aligned_cols=187 Identities=12% Similarity=0.020 Sum_probs=117.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-C-CCHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---VETFCIIMRKYARVQKVEEAVYTFNVMQKYGV-T-QNLAAF 169 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~ 169 (480)
.++..+......+.+.|++++|...|+.+....+.+ ..++..+..++...|++++|+..|+...+... . ....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 467777778888888899999999999988877644 77888888888899999999999988887531 1 224556
Q ss_pred HHHHHHHHc--------cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 011652 170 NGLLSALCK--------SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIM 241 (480)
Q Consensus 170 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (480)
..+..++.. .|++++|...|+++....|.+......+... ...... -...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~--------------~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI--------------RELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH--------------HHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH--------------HHHHHH----HHHHHHHH
Confidence 667777777 8888888888888877544444444222110 000000 00113344
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCc--cHHHHHHHHHHhhcc----------CCHHHHHHHHHHHHHC
Q 011652 242 VDVLCKAGRVDEALGIVKSMDSTVCRP--TSFIYSVLVHTYGVE----------NRIEDAVDTFLEMEKN 299 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 299 (480)
...|...|++++|+..++.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 555666666666666666665432111 223444555555544 5666666666666553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-09 Score=90.83 Aligned_cols=113 Identities=7% Similarity=0.057 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCI----------------IMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+..+......+.+.|++++|...|++.....|.+...|.. +...+...|++++|+..|++..+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344445556667777777777777777665544444444 444555555555555555555444
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
. |.+...+..+..++...|++++|...|++..+..|.+..+|..+...|
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3 334444445555555555555555555554443344444444444444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.5e-10 Score=109.44 Aligned_cols=174 Identities=13% Similarity=-0.017 Sum_probs=133.0
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 108 AKIRQYQIMWDLVNAMR--------TKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
...|++++|++.+++.. ...+.+...+..+...+...|++++|++.|+++.+.+ +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67788888888888887 6666677788888888888888888888888887764 55677888888888888
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
|++++|...|++..+..+.+...|..+..++.+.|++++ .+.|++..+.+.. +...|..+..++.+.|++++|++.++
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888877666677888888888888888888 8888888775432 56677888888888888888888888
Q ss_pred HhhhCCCCccHHHHHHHHHHhhccCC
Q 011652 260 SMDSTVCRPTSFIYSVLVHTYGVENR 285 (480)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (480)
+..+.. +.+...+..+..++...++
T Consensus 559 ~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTS-TTHHHHHHHHHHHTC----
T ss_pred hhcccC-cccHHHHHHHHHHHHccCC
Confidence 887653 3345566667777665554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-07 Score=88.07 Aligned_cols=357 Identities=10% Similarity=0.035 Sum_probs=199.2
Q ss_pred CCCHHHHHHHHHHHhh-CcHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhC-C--CCCHHHH
Q 011652 60 RVSPEIVEDVLEKFRN-AGTLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ-YQIMWDLVNAMRTK-R--MLNVETF 134 (480)
Q Consensus 60 ~~~~~~~~~~l~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~--~~~~~~~ 134 (480)
.-...++...+..++. ....+.++|+...... |++..|...+....+.+. .+....+|+..... | +.+...|
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 3445667777777763 3348899998886642 699999999988877763 45677788876653 3 3677888
Q ss_pred HHHHHHHH----HhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-------------cCChhhHHHHHHHhhcCCC
Q 011652 135 CIIMRKYA----RVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK-------------SKNVRKAQEIFDCMKDRFI 197 (480)
Q Consensus 135 ~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~~~ 197 (480)
...+..+. .+++.+.+..+|++.+......-...|......-.. .+.+..|..+++.+....+
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 88887654 356788899999999874211112233322221111 1122333444444332111
Q ss_pred -CChhhHHHHHHHhhcCC--C-----hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcc
Q 011652 198 -PDSKTYSILLEGWGKDP--N-----LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT 269 (480)
Q Consensus 198 -~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (480)
.+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|+.++|..++++.... +.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 13345555555432221 1 234566777777643 335666777777777788888888888888776 333
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 011652 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNG---------ILA---DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA 337 (480)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (480)
...+.. |+...+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|.+. .. ..
T Consensus 246 ~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~ 316 (493)
T 2uy1_A 246 MFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EG 316 (493)
T ss_dssp SHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SC
T ss_pred HHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CC
Confidence 322222 1111111111 22221110 000 1233444555555566777777777777 22 11
Q ss_pred CChhhHHHHHHHHHh-CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011652 338 PNSRTCNIILNGLIG-RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLI 416 (480)
Q Consensus 338 p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (480)
.+...|......-.. .++.+.|..+|+...+..+.++..+...++.....|+.+.|..+|+.+. .....|...+
T Consensus 317 ~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~ 391 (493)
T 2uy1_A 317 VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI 391 (493)
T ss_dssp CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 222333322221122 2357777777777777555555566666666667777777777777762 1456666666
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 011652 417 NGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~ 436 (480)
..-...|+.+.+..+++++.
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 66566677777777776665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.6e-09 Score=92.79 Aligned_cols=131 Identities=11% Similarity=-0.033 Sum_probs=60.5
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHhhcCC----CC--ChhhHHHHHHHhhcC-CChhHHHHHHHHHHHcCCCC-C----h
Q 011652 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRF----IP--DSKTYSILLEGWGKD-PNLPRAREIFREMVDTGCNP-D----I 235 (480)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~ 235 (480)
+|+.+..+|...|++++|...+++..... .+ -..+++.+...|... |++++|+..|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 44444444444445444444444443200 00 023444555555553 55555555555544321000 0 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccH------HHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 011652 236 VTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTS------FIYSVLVHTYGVENRIEDAVDTFLEMEK 298 (480)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (480)
.++..+...+...|++++|+..+++.......... ..+..+..++...|++++|...|++..+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555556666666555555543211111 1344455555555666666666555543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-07 Score=83.58 Aligned_cols=125 Identities=8% Similarity=-0.049 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCHHHHHHHHHHH----HHh---CCHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR--QYQIMWDLVNAMRTKRMLNVETFCIIMRKY----ARV---QKVEE 149 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~~ 149 (480)
.|++.++.+...++ -+..+|+..-..+...+ ++++++++++.+...+|.+..+|+.-...+ ... +++++
T Consensus 51 ~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 44444444443332 23444444444444444 444444444444444444444443333332 222 33444
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh--hHHHHHHHhhcCCCCChhhHHHH
Q 011652 150 AVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR--KAQEIFDCMKDRFIPDSKTYSIL 206 (480)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~l 206 (480)
++++++.+.+.. +-+..+|+.-.-++.+.|.++ ++++.++++.+..+.|...|+.-
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R 186 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHR 186 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 444444444332 333334443333333334333 44444444443333333444333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-08 Score=88.97 Aligned_cols=170 Identities=8% Similarity=-0.011 Sum_probs=109.1
Q ss_pred CccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC-hh
Q 011652 267 RPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILAD---VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVA-PN-SR 341 (480)
Q Consensus 267 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~-~~ 341 (480)
+.+...+..+...+...|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|++..+..+. |. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345566667777788888888888888888765322 2 566777778888888888888888888775321 11 33
Q ss_pred hHHHHHHHHHh--------CCChHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 011652 342 TCNIILNGLIG--------RGETDEAYRVFRRMIKLCEADADTY-----------------TMMIKMFCQGGELEKAFKV 396 (480)
Q Consensus 342 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~ 396 (480)
.+..+..++.. .|++++|...|+++.+..|.+.... ..+...|...|++++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 45566666777 8888888888888887555544443 3445556666666666666
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHH
Q 011652 397 WKYMKLKRFIP--SMHTFSVLINGLCDK----------GIVSDSCVLLEDMIE 437 (480)
Q Consensus 397 ~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 437 (480)
|+++.+..... ....+..+..+|... |++++|...|+++.+
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 66665532110 123455555555544 555666666666554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.08 E-value=4.8e-07 Score=85.69 Aligned_cols=343 Identities=8% Similarity=-0.003 Sum_probs=219.7
Q ss_pred CChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHc----cCChh
Q 011652 111 RQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQK-VEEAVYTFNVMQKY-GV-TQNLAAFNGLLSALCK----SKNVR 183 (480)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~----~~~~~ 183 (480)
|+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |. +.+...|...+..+.. .++.+
T Consensus 28 ~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 8899999999999874 3699999999988887773 45677888877653 43 3467888888876543 46788
Q ss_pred hHHHHHHHhhcCCCCC--hhhHHHHHHHhhc-------------CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011652 184 KAQEIFDCMKDRFIPD--SKTYSILLEGWGK-------------DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA 248 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (480)
.+.++|++.... |+. ...|......-.. .+.+..|..+++.+...-...+...|...+..-...
T Consensus 107 ~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 107 KIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 899999999872 221 1222222211100 112333444444443210001233555544433221
Q ss_pred --CC-----HHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011652 249 --GR-----VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKF 321 (480)
Q Consensus 249 --g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 321 (480)
|- .+.+..+|+++.... +.+...|...+..+...|+.+.|..++++.... +.+...+. .|......
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 11 345677888887753 556778888888889999999999999999887 33333322 23322222
Q ss_pred hHHHHHHHHHHhC---C------CCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-
Q 011652 322 KNVYRVLKDMNSK---G------VAP---NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG- 388 (480)
Q Consensus 322 ~~a~~~~~~~~~~---~------~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 388 (480)
++. ++.+.+. . ..+ ....|...+..+.+.++.+.|..+|+++ ...+.+...|...+..-...+
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHC
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCC
Confidence 222 2222211 0 001 1245666666666788899999999999 422235556654443333334
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 389 ELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQE 468 (480)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (480)
+.+.|..+|+...+.. +-+...|...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6999999999988753 2245667777887788899999999999972 257788888888888999999999887
Q ss_pred HHHh
Q 011652 469 KMNL 472 (480)
Q Consensus 469 ~~~~ 472 (480)
+..+
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-09 Score=87.11 Aligned_cols=181 Identities=10% Similarity=0.036 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
...+......+...|++++|+..|+...+.. |.+...+... .... ...........+..++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~-------------~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDK-------------NSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCT-------------TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcc-------------hhhhhHHHHHHHHHHH
Confidence 3444555566778889999999988887753 2233344330 0000 0000111222345555
Q ss_pred hcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCC--HHH
Q 011652 211 GKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR--IED 288 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~ 288 (480)
.+.|++++|...|++..+.... +...+..+..++...|++++|...|++..+.. +.+..++..+..+|...|+ .+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555555555544221 34455555555555555555555555555543 3344445555554443332 223
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 289 AVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
+...+..... ..|....+.....++...|++++|...|++..+.
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3333333321 1111122222333444455666666666665553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-07 Score=82.69 Aligned_cols=223 Identities=9% Similarity=0.016 Sum_probs=182.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hcc---
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ--KVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL----CKS--- 179 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~--- 179 (480)
+....++|+.+++.+...+|-+..+|+.--..+...| +++++++.++.+.... +-+..+|+.--.++ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3344568999999999999989999999988888888 9999999999999875 55667777655555 445
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChh--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC------H
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP--RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR------V 251 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 251 (480)
+++++++.+++.+.+..+.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 78999999999999987889999998888888888888 999999999987654 77788777767777776 8
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 011652 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIED-AVDTFLEMEKNG--ILADVAMYNALIGAFCKANKFKNVYRVL 328 (480)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 328 (480)
+++++.++.+.... +-|...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999998875 6688889888888888887544 555666655432 2347888999999999999999999999
Q ss_pred HHHHhC
Q 011652 329 KDMNSK 334 (480)
Q Consensus 329 ~~~~~~ 334 (480)
+.+.+.
T Consensus 282 ~~l~~~ 287 (306)
T 3dra_A 282 DLLKSK 287 (306)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999863
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.05 E-value=5e-09 Score=103.94 Aligned_cols=173 Identities=6% Similarity=-0.069 Sum_probs=136.3
Q ss_pred HhcCCHHHHHHHHHHhh--------hCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011652 246 CKAGRVDEALGIVKSMD--------STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK 317 (480)
Q Consensus 246 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 317 (480)
...|++++|++.+++.. ... +.+...+..+..++...|++++|...|++..+... .+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67888999999998887 332 44567788888888899999999999998876532 367788888888899
Q ss_pred cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 318 ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
.|++++|...|++..+.... +...+..+..++.+.|++++ .+.|+++.+..+.+...|..+..++.+.|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998876433 56677888888889999999 99999988877888889999999999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 011652 398 KYMKLKRFIPS-MHTFSVLINGLCDKGI 424 (480)
Q Consensus 398 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 424 (480)
+++.+.+ |+ ...+..+..++...++
T Consensus 558 ~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HhhcccC--cccHHHHHHHHHHHHccCC
Confidence 9887754 44 5667777777766554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.2e-09 Score=86.97 Aligned_cols=161 Identities=7% Similarity=-0.030 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA-LCK 178 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~ 178 (480)
+......+.+.|++++|...|++.....|.+...+..+...+...|++++|+..++...+.. |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44455666777777777777777766666677777777777777777777777777776543 244333222211 112
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVDEALGI 257 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 257 (480)
.+....|...+++.....|.+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223345666666655445556666666666666666666666666666543322 234555666666666666666666
Q ss_pred HHHhh
Q 011652 258 VKSMD 262 (480)
Q Consensus 258 ~~~~~ 262 (480)
|++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6e-09 Score=91.71 Aligned_cols=166 Identities=11% Similarity=-0.031 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHH-HH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG-LL 173 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll 173 (480)
.+...+..+...+.+.|++++|...|++.....|.+...+..+...+...|++++|...++.+.... |+...... ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4566777778888888888888888888888888788888888888888888888888888887653 44433322 22
Q ss_pred HHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHH
Q 011652 174 SALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP-DIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 252 (480)
..+...++.+.|...+++.....|.+...+..+...+...|++++|...|.++.+..... +...+..++..+...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 335566777778888888777667778888888888888888888888888887754221 2456777777777778877
Q ss_pred HHHHHHHHhh
Q 011652 253 EALGIVKSMD 262 (480)
Q Consensus 253 ~a~~~~~~~~ 262 (480)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777776554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-08 Score=85.44 Aligned_cols=186 Identities=8% Similarity=-0.038 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH---HHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRML---NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNL---AAF 169 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 169 (480)
++..+..+...+.+.|++++|+..|+.+....+. ....+..+..++.+.|++++|+..|+.+.+.. |.+. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 5566667777888899999999999998876652 24678888889999999999999999988754 2222 234
Q ss_pred HHHHHHHHc------------------cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC
Q 011652 170 NGLLSALCK------------------SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC 231 (480)
Q Consensus 170 ~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (480)
..+..++.. .|+.++|...|+++.+..|.+...+....... .+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHHH----
Confidence 334444433 45677777777777665554444433221110 0000000
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCC
Q 011652 232 NPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP--TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNG 300 (480)
Q Consensus 232 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (480)
.....+...|.+.|++++|+..++.+.+..... ....+..+..++.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011345677888999999999999988763111 12467788889999999999999999888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-09 Score=84.64 Aligned_cols=143 Identities=12% Similarity=0.041 Sum_probs=93.0
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKA 393 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 393 (480)
.+...|++++|...+......... +...+..+...|.+.|++++|++.|+++.+..|.++.+|..+..+|...|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 344456677777777666553111 3345556677777777777777777777776677777777777777777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 394 FKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVL-LEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
...|++..+.+.. +...|..+...|.+.|++++|.+. ++++.+.. +-++.+|......+...|+
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8777777765432 566777777777777777665554 46666643 2245555555555555553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-10 Score=86.74 Aligned_cols=108 Identities=10% Similarity=-0.088 Sum_probs=48.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHH
Q 011652 110 IRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIF 189 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 189 (480)
.|++++|+..++......+.++..+..+...|...|++++|++.|++..+.. |.+..+|..+..+|...|++++|...|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 3444444444444433322223333344444444444444444444444433 334444444444444444444444444
Q ss_pred HHhhcCCCCChhhHHHHHHHhhcCCChhH
Q 011652 190 DCMKDRFIPDSKTYSILLEGWGKDPNLPR 218 (480)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (480)
++..+..|.+..+|..+...+.+.|++++
T Consensus 89 ~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 89 RRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 44444333344444444444444444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-08 Score=82.85 Aligned_cols=190 Identities=6% Similarity=-0.013 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCh--hhHHH
Q 011652 270 SFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL-A-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS--RTCNI 345 (480)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ 345 (480)
...+..+...+...|++++|...|+++.+.... + ....+..+..+|.+.|++++|...|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445556667788888899998888888764322 1 1356777778888888888888888888875332111 12333
Q ss_pred HHHHHHh------------------CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011652 346 ILNGLIG------------------RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP 407 (480)
Q Consensus 346 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 407 (480)
+..++.. .|+.++|...|+++.+..|.+...+........ +...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH-------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH-------
Confidence 3333332 345566666666655544444333322111000 00000
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCCC
Q 011652 408 SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKEP 477 (480)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~~ 477 (480)
......+...|.+.|++++|+..|+++++...... ...+..+..++.+.|++++|.+.++.+....+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01113456678888999999999999887532111 2457778888999999999999998887765544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.6e-09 Score=100.80 Aligned_cols=150 Identities=12% Similarity=-0.012 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 78 TLAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
..|.+.|+.+.+..+ .+...|..+...+.+.|++++|.+.|++..+..+.+..++..+...+...|++++|.+.+++.
T Consensus 6 ~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 6 PRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 367777777655433 467788888888888888888888888888877777888888888888888888888888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC---CChhHHHHHHHHHHHcC
Q 011652 158 QKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD---PNLPRAREIFREMVDTG 230 (480)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 230 (480)
.+.. +.+...+..+..++...|++++|.+.+++..+..+.+...+..+...+... |++++|.+.+++..+.+
T Consensus 84 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 84 SDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7764 456777888888888888888888888888776566777888888888888 88888888888887654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-08 Score=98.03 Aligned_cols=154 Identities=7% Similarity=-0.068 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHH
Q 011652 283 ENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRV 362 (480)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 362 (480)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987653 236788999999999999999999999999987433 567888899999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcC
Q 011652 363 FRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK---GIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 439 (480)
+++..+..+.+...+..+..+|...|++++|.+.+++..+... .+...+..+...+... |++++|.+.++++.+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999998788899999999999999999999999999988653 3678889999999999 99999999999999765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-08 Score=88.51 Aligned_cols=168 Identities=9% Similarity=-0.070 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011652 128 MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 128 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
+.+...+..+...+...|++++|+..|++..+.. |.+...+..+..++...|++++|...++++....+..........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3455666777777788888888888888877764 556677777888888888888888888877664332222222233
Q ss_pred HHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHhhccCCH
Q 011652 208 EGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR-PTSFIYSVLVHTYGVENRI 286 (480)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 286 (480)
..+...++.++|...+++...... .+...+..+...+...|++++|...+.++.+.... .+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 335566667777777777766532 25666777777777777777777777777765321 1245666777777777777
Q ss_pred HHHHHHHHHHH
Q 011652 287 EDAVDTFLEME 297 (480)
Q Consensus 287 ~~a~~~~~~~~ 297 (480)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77766666543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.6e-09 Score=84.11 Aligned_cols=157 Identities=8% Similarity=0.029 Sum_probs=80.6
Q ss_pred HHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhCCC
Q 011652 277 VHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNG-LIGRGE 355 (480)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~ 355 (480)
...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..... |+.......... +...++
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcc
Confidence 334444455555555554443321 1134444555555555555555555555544331 122111111101 111122
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011652 356 TDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP-SMHTFSVLINGLCDKGIVSDSCVLLED 434 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (480)
...|...+++..+..|.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++
T Consensus 90 ~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 90 ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 2335566666666555666666677777777777777777777666654322 244666666666666777777766665
Q ss_pred HH
Q 011652 435 MI 436 (480)
Q Consensus 435 ~~ 436 (480)
.+
T Consensus 170 al 171 (176)
T 2r5s_A 170 QL 171 (176)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.8e-08 Score=80.00 Aligned_cols=106 Identities=12% Similarity=0.083 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC----CHHHHHHHHH
Q 011652 219 AREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN----RIEDAVDTFL 294 (480)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~ 294 (480)
|.+.|++..+.| +...+..+...|...+++++|++.|++..+.+ +...+..+...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555554432 44445555555555555555555555555443 33444444444444 3 5555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhC
Q 011652 295 EMEKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 295 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 334 (480)
+..+.| +...+..+...|.. .+++++|...|++..+.
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 554432 33444444444443 44455555555544443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-07 Score=77.31 Aligned_cols=173 Identities=9% Similarity=-0.028 Sum_probs=82.9
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHhHHHHHHH
Q 011652 254 ALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKAN----KFKNVYRVLK 329 (480)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~ 329 (480)
|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + +.++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555554433 44445555555555555555555555555543 34444444444444 4 5555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 011652 330 DMNSKGVAPNSRTCNIILNGLIG----RGETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQ----GGELEKAFKVWKY 399 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 399 (480)
+..+.| +...+..+...|.. .++.++|.++|++..+..+. ++..+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554432 33344444444444 45555555555555442111 14445555555554 4455555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHc
Q 011652 400 MKLKRFIPSMHTFSVLINGLCDK-G-----IVSDSCVLLEDMIEK 438 (480)
Q Consensus 400 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 438 (480)
..+.+ .+...+..+...|... | +.++|..+|++..+.
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55441 1233444444444332 1 455555555555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-08 Score=89.14 Aligned_cols=164 Identities=9% Similarity=0.031 Sum_probs=76.2
Q ss_pred cCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhc-CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK-DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGI 257 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 257 (480)
.|++++|.+++++..+..+. .+.+ .+++++|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 45566666666665542111 0222 45666666665543 3345566777777666
Q ss_pred HHHhhhC----CCC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHH
Q 011652 258 VKSMDST----VCR-PTSFIYSVLVHTYGVENRIEDAVDTFLEMEKN----GILA-DVAMYNALIGAFCKANKFKNVYRV 327 (480)
Q Consensus 258 ~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 327 (480)
+.+.... +-. .-..+|..+..+|...|++++|+..|++..+. |-.. ...++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 6655432 100 01234555555555666666666666554321 1000 02234444444444 555555555
Q ss_pred HHHHHhCCCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 328 LKDMNSKGVAP-----NSRTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 328 ~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
+++..+..... ...++..+...+...|++++|+..++++.+
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55444321000 012344444444445555555555544443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-06 Score=77.22 Aligned_cols=147 Identities=7% Similarity=-0.017 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-C-CHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIR-QYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV-Q-KVEEAVYTFN 155 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~ 155 (480)
.|+++++.+...++ -+..+|+..-..+...| .+++++.+++.+...++.+..+|+.-...+... + ++++++++++
T Consensus 72 ~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 72 RALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 56666666655443 35566666666666666 366666666666666666666666665555555 5 5666666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChh--------hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC-------hhHHH
Q 011652 156 VMQKYGVTQNLAAFNGLLSALCKSKNVR--------KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN-------LPRAR 220 (480)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~ 220 (480)
.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++.+..+.|...|+.....+.+.+. +++++
T Consensus 150 k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 150 GSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp HHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 666544 445555555444444444443 55555555555444455555555555544443 34444
Q ss_pred HHHHHHHH
Q 011652 221 EIFREMVD 228 (480)
Q Consensus 221 ~~~~~~~~ 228 (480)
+.+++++.
T Consensus 229 e~~~~aI~ 236 (349)
T 3q7a_A 229 IYILKSIH 236 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-08 Score=88.78 Aligned_cols=223 Identities=10% Similarity=0.077 Sum_probs=159.1
Q ss_pred CCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHH
Q 011652 213 DPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK-AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVD 291 (480)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 291 (480)
.|++++|.+++++..+... . .+.+ .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4677888888887765321 1 1222 57888888877754 456778899999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC---CCCC--hhhHHHHHHHHHhCCChHHHHH
Q 011652 292 TFLEMEKN----GILA-DVAMYNALIGAFCKANKFKNVYRVLKDMNSKG---VAPN--SRTCNIILNGLIGRGETDEAYR 361 (480)
Q Consensus 292 ~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~ 361 (480)
.|.+..+. +-.. -..+|+.+...|...|++++|...+++..+.. -.+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99887542 1111 14578888889999999999999999876531 1111 3467778888888 99999999
Q ss_pred HHHHHHhcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 011652 362 VFRRMIKLCEA------DADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIPS-MHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 362 ~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 430 (480)
.+++.....+. ...++..+...|.+.|++++|...|++.... +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998872211 1467889999999999999999999988763 22111 2356667777888899999999
Q ss_pred HHHHHHHcCCCCC---HH---HHHHHHHHHHhcCCHHHHHHH
Q 011652 431 LLEDMIEKGIRPS---GE---TFGKLRKLLIKEGREDVLKFL 466 (480)
Q Consensus 431 ~~~~~~~~~~~p~---~~---~~~~l~~~~~~~g~~~~a~~~ 466 (480)
.|++.. . .|+ .. .+..++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999998 4 343 22 244455555 57887777663
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-07 Score=79.58 Aligned_cols=163 Identities=10% Similarity=0.055 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCC--H
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV------ETFCIIMRKYARVQKVEEAVYTFNVMQKYGV---TQN--L 166 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 166 (480)
..+...+..+...|++++|.+.++......+... ..+..+...+...|++++|+..++...+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566667777778777777777665544222 1223344445555666666666666554211 111 3
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhc---CCCCC----hhhHHHHHHHhhcCCChhHHHHHHHHHHHcC----CCC-C
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKD---RFIPD----SKTYSILLEGWGKDPNLPRAREIFREMVDTG----CNP-D 234 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 234 (480)
.+++.+...|...|++++|...|++... ..+.+ ..++..+...|.+.|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3555666666666666666666666542 11111 1355555555666666666666655544221 000 0
Q ss_pred hhhHHHHHHHHHhcCCHHHH-HHHHHH
Q 011652 235 IVTYGIMVDVLCKAGRVDEA-LGIVKS 260 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a-~~~~~~ 260 (480)
..+|..+..+|...|++++| ...+++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33444455555555555555 444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.8e-08 Score=72.69 Aligned_cols=110 Identities=8% Similarity=0.022 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
..+......+.+.|++++|++.|++..+.++.+..+|..+..++...|++++|+..+++.++.+ +.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 4555666677777777777777777777666667777777777777777777777777776654 445666667777777
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
..|++++|.+.|++..+..|.+...+..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 7777777777777766654555555554433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-07 Score=81.11 Aligned_cols=203 Identities=12% Similarity=0.087 Sum_probs=113.3
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHhhCcHHHHHHHHHHhhcCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011652 52 TALDQSGIRVSPEIVEDVLEKFRNAGTLAFCFFKWAEKQQNYEHSVR---AYHSMIESLAKIRQYQIMWDLVNAMRTKRM 128 (480)
Q Consensus 52 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 128 (480)
..++.....|+.+.+..+...+.-... .+|... . ..+.. .+...+..+...|++++|..+++.......
T Consensus 35 s~~e~g~~~~~~~~l~~i~~~l~~~~~---~~~~~~----~-~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~ 106 (293)
T 3u3w_A 35 SRIESGAVYPSMDILQGIAAKLQIPII---HFYEVL----I-YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE 106 (293)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHTCCTH---HHHHTT----T-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCcCHH---HHhCCC----C-CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Confidence 344444456777777777777654432 222211 1 12222 233346667778888888888888776544
Q ss_pred CCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHccCChhhHHHHHHHhhc---
Q 011652 129 LNVE------TFCIIMRKYARVQKVEEAVYTFNVMQKYGVT-QN----LAAFNGLLSALCKSKNVRKAQEIFDCMKD--- 194 (480)
Q Consensus 129 ~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--- 194 (480)
.++. .+..+...+...|++++|+..++...+.... ++ ..+++.+..+|...|++++|...|++..+
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 107 YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2222 2223555555666778888877777663211 12 23567777777777777777777777653
Q ss_pred C---CCC-ChhhHHHHHHHhhcCCChhHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCC-HHHHHHHHHHhh
Q 011652 195 R---FIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDT----GCNPD-IVTYGIMVDVLCKAGR-VDEALGIVKSMD 262 (480)
Q Consensus 195 ~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 262 (480)
. ..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|..+..++.+.|+ +++|.+.+++..
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 111 1235566666666666666666666665432 11111 3455555566666663 466666555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-07 Score=76.76 Aligned_cols=125 Identities=7% Similarity=-0.044 Sum_probs=64.9
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 011652 274 SVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGR 353 (480)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 353 (480)
..+...+...|++++|...|++.. .|+...+..+...|...|++++|...+++..+... .+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHc
Confidence 344445555555555555555442 33455555555555555555555555555554321 1344455555555555
Q ss_pred CChHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 354 GETDEAYRVFRRMIKLCEADA----------------DTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
|++++|...++.+.+..+.+. ..+..+..+|...|++++|.+.|+++.+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555555555333322 44555555555555555555555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-06 Score=77.59 Aligned_cols=127 Identities=11% Similarity=0.026 Sum_probs=51.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC---CC--hhhHH
Q 011652 275 VLVHTYGVENRIEDAVDTFLEMEKNGILADV-----AMYNALIGAFCKANKFKNVYRVLKDMNSKGVA---PN--SRTCN 344 (480)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---p~--~~~~~ 344 (480)
..+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+.+..+.... +. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3444445555555555555544433211100 11122223334444555555555444432111 00 12344
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIK---LCEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
.+...|...|++++|...++++.+ ..+.+ ..++..+..+|...|++++|...+++..
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 444444444555555554444442 11111 1244444444444444444444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-06 Score=75.63 Aligned_cols=164 Identities=12% Similarity=0.122 Sum_probs=115.2
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCC-CCChh----hHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCC----HHHHHH
Q 011652 311 LIGAFCKANKFKNVYRVLKDMNSKGV-APNSR----TCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADTYTM 379 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~ 379 (480)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++.+.+. ..++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888876422 22211 2334556666777888888888888772 1222 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKL----K-RFIPS-MHTFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRPS-GETFG 448 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 448 (480)
+..+|...|++++|...++++.+ . +..+. ..++..+...|.+.|++++|...+++.++. +..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888899999999998888773 1 11112 247788888899999999999998888742 22222 56778
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhhh
Q 011652 449 KLRKLLIKEGR-EDVLKFLQEKMNLLV 474 (480)
Q Consensus 449 ~l~~~~~~~g~-~~~a~~~~~~~~~l~ 474 (480)
.+..++.+.|+ +++|.+.+++..++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88888888994 689998888877653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.8e-06 Score=74.39 Aligned_cols=225 Identities=11% Similarity=0.036 Sum_probs=173.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-C-Chh
Q 011652 107 LAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS-K-NVR 183 (480)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~ 183 (480)
..+.+..++|+++++.+...++-+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-..++... + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 334455678999999999999989999999888888888 5999999999999876 66778888877777666 6 889
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChh--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLP--------RAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR----- 250 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 250 (480)
+++++++.+.+..+.|..+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 9999999999988889999887766666666666 899999999987654 78888888877777776
Q ss_pred --HHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCH--------------------HHHHHHHHHHHHCC-----CCC
Q 011652 251 --VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRI--------------------EDAVDTFLEMEKNG-----ILA 303 (480)
Q Consensus 251 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~ 303 (480)
++++++.+++..... +-|...|+.+-..+.+.|.. ........++...+ ..+
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 689999999888765 66777887766666665543 33344444443322 135
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
+...+..++..|...|+.++|.++++.+.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999999998754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-07 Score=73.07 Aligned_cols=130 Identities=8% Similarity=-0.045 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
.+..+...+...|++++|...++...+..+.+..++..+..++...|++++|...+++...... .+...|..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 4555556666777777777777777765566677777777777777777777777777766542 256677777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 422 KGIVSDSCVLLEDMIEKGIRPSGETFG--KLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
.|++++|...++++.+... .+...+. ..+..+.+.|++++|.+.+++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 7777777777777776532 2334442 3333366677777777777766543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=75.55 Aligned_cols=128 Identities=10% Similarity=-0.021 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
..|..+...+...|++++|...|+......+.+..++..+...+...|++++|+..++...+.. +.+..++..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3445555555666666666666666655555555566666666666666666666666555543 334555555555555
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHH--HhhcCCChhHHHHHHHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLE--GWGKDPNLPRAREIFREM 226 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~ 226 (480)
..|++++|...|++.....+.+...+..+.. .+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5556666655555555433333333322222 244445555555544443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.81 E-value=7.3e-08 Score=84.43 Aligned_cols=96 Identities=8% Similarity=-0.127 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhh
Q 011652 132 ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211 (480)
Q Consensus 132 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (480)
..+..+...+...|++++|+..|+...+.. +.+...+..+..+|.+.|++++|...+++.....+.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444455555555555555555554432 2344455555555555555555555555555544445555555555555
Q ss_pred cCCChhHHHHHHHHHHH
Q 011652 212 KDPNLPRAREIFREMVD 228 (480)
Q Consensus 212 ~~~~~~~a~~~~~~~~~ 228 (480)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-07 Score=76.38 Aligned_cols=128 Identities=10% Similarity=-0.015 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
.+..+...+...|++++|...|++.. .++..++..+...+...|++++|+..|+...+.. +.+...+..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 34556667778888888888887663 2467788888888888888888888888887764 5567778888888888
Q ss_pred cCChhhHHHHHHHhhcCCCCCh----------------hhHHHHHHHhhcCCChhHHHHHHHHHHHcC
Q 011652 179 SKNVRKAQEIFDCMKDRFIPDS----------------KTYSILLEGWGKDPNLPRAREIFREMVDTG 230 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (480)
.|++++|...|++.....+.+. ..+..+..++.+.|++++|...|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888776444433 667777788888888888888888877643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-07 Score=70.07 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...|..+...+...|++++|.+.++++....+.+..++..+...+...|++++|..+++.+.+.. +.+..++..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 45566666666666666666666666665555555666666666666666666666666665543 34455555666666
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
...|++++|...++++....+.+...+..+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 666666666666666555333344444444333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.5e-08 Score=76.43 Aligned_cols=103 Identities=9% Similarity=-0.037 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...+..+...+.+.|++++|...|+++....|.++..|..+..+|...|++++|...|+++...... +...|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 3466777778888999999999999998888888999999999999999999999999998876533 667888888999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 420 CDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
...|++++|...|+++++.. |+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999988753 5554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.1e-07 Score=68.65 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
.+......+.+.|++++|++.|+++.+..+.+...|..+..+|.+.|++++|...+++..+.+.. +...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 44555666677777777777777777666667777777777777777777777777777665422 56667777777777
Q ss_pred cCChHHHHHHHHHHHHc
Q 011652 422 KGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 422 ~g~~~~A~~~~~~~~~~ 438 (480)
.|++++|...|++.++.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 77777777777777664
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-07 Score=71.71 Aligned_cols=116 Identities=8% Similarity=-0.020 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.+...|..+...+.+.|++++|...|++.....+.+..++..+...+...|++++|++.+++..+.. +.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 4556667777777777777777777777776666666677777777777777777777777766653 345566666666
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhh
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWG 211 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (480)
++...|++++|...|++.....+.+...+..+..++.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 6666777777777766665543334444555544443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-07 Score=77.08 Aligned_cols=121 Identities=10% Similarity=0.124 Sum_probs=87.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCCh--hh
Q 011652 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA-LCKSKNV--RK 184 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~~ 184 (480)
...|++++|...++......+.+...|..+...+...|++++|+..|+...+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345677778888877777777777778888888888888888888888777654 4466667777766 6677777 88
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 185 AQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
|...+++.....+.+...+..+...+...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888777755666777777777888888888888888877765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-07 Score=70.70 Aligned_cols=118 Identities=12% Similarity=0.002 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+..+...+...|++++|...|++.....+.+...+..+...+...|++++|.+.++...+.. +.+...+..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 44555555666666666666666666655555555566666666666666666666666655543 33455555555556
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN 215 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (480)
...|++++|...|++.....+.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 666666666666655554334444455555544444433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-07 Score=71.65 Aligned_cols=99 Identities=7% Similarity=-0.074 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
...+..+...+.+.|++++|...|++.....+. +...|..+..++...|++++|...|+++.+..|.++..|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 445666667777788888888888887776333 5667777777788888888888888888776677777788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 011652 385 CQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~ 404 (480)
...|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.73 E-value=8.6e-07 Score=66.44 Aligned_cols=114 Identities=14% Similarity=0.187 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+...|++++|.+.++++.+..+.+..++..+...+...|++++|...++++..... .+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 45555666666667777777777666665555666677777777777777777777777665432 25566666777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
..|++++|...++++.+.. +.+...+..+..++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 7777777777777776543 2234444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=78.07 Aligned_cols=155 Identities=11% Similarity=-0.041 Sum_probs=88.6
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCC
Q 011652 281 GVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK----GVAP-NSRTCNIILNGLIGRGE 355 (480)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~ 355 (480)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +..| ....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777755444332 2224556667777777777777777777776551 1111 23455566666777777
Q ss_pred hHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcC
Q 011652 356 TDEAYRVFRRMIKL---CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIP-SMHTFSVLINGLCDKG 423 (480)
Q Consensus 356 ~~~a~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g 423 (480)
+++|...+++.... .+.+ ...+..+...+...|++++|...+++.... +..+ ...++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777766651 2212 234566666677777777777777665532 1110 0123455666666677
Q ss_pred ChHHHHHHHHHHH
Q 011652 424 IVSDSCVLLEDMI 436 (480)
Q Consensus 424 ~~~~A~~~~~~~~ 436 (480)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777766666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=83.11 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.+...+..+...+.+.|++++|...|+......+.+...|..+...+...|++++|+..++...+.. +.+...+..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3667888888889999999999999999988888888889999999999999999999999988765 556788888888
Q ss_pred HHHccCChhhHHHHHHHhhc
Q 011652 175 ALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~ 194 (480)
++...|++++|...|++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=9.1e-08 Score=74.69 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=90.7
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 326 RVLKDMNSKGVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 326 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
..++++... .| +...+..+...+...|++++|...|+.+....+.+...|..+..+|...|++++|...|+++...+
T Consensus 8 ~~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 23 345667778888999999999999999998888899999999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 405 FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.. +...+..+..+|...|++++|...|++.++.
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 6678888999999999999999999998864
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.5e-07 Score=74.78 Aligned_cols=123 Identities=10% Similarity=0.155 Sum_probs=97.2
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCH--H
Q 011652 315 FCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKM-FCQGGEL--E 391 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 391 (480)
+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+..+.+...+..+..+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3457788889888888877633 2567888888889999999999999999888667788888888888 7788888 9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 392 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
+|...++++..... .+...+..+...+...|++++|...|+++.+..
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999998887653 257788888888999999999999999988753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=6.3e-07 Score=67.85 Aligned_cols=118 Identities=10% Similarity=0.031 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...+..+...+...|++++|...++++....+.+...+..+..++...|++++|.+.+++...... .+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence 344555666666777777777777777665566667777777777777777777777777766532 2466677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777777777653 2345556666666666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-07 Score=74.40 Aligned_cols=97 Identities=12% Similarity=-0.013 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHh
Q 011652 131 VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGW 210 (480)
Q Consensus 131 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (480)
...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|...|++.....+.+...+..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3344444444445555555555555444433 334444444444555555555555555554443344444455555555
Q ss_pred hcCCChhHHHHHHHHHHH
Q 011652 211 GKDPNLPRAREIFREMVD 228 (480)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~ 228 (480)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-07 Score=68.23 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+...|++++|...++++.+..+.+...+..+..++...|++++|.+.++++.+... .+...+..+..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 34555555556666666666666666554455566666666666666666666666666655432 24556666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011652 421 DKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG 458 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 458 (480)
..|++++|...|++..+... .+...+..+..++.+.|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 66666666666666655321 12334444444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-05 Score=70.57 Aligned_cols=184 Identities=6% Similarity=-0.093 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC-hHHHHHHH
Q 011652 287 EDAVDTFLEMEKNGILADVAMYNALIGAFCKAN--KFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE-TDEAYRVF 363 (480)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 363 (480)
++++..++.+..... -+..+|+.-...+.+.+ .++++..++..+.+.... +...|+.-.-.+...|. .+++++.+
T Consensus 91 ~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 444455555444322 24444444444444444 245555555555554332 44444444444444444 35555555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------
Q 011652 364 RRMIKLCEADADTYTMMIKMFCQG--------------GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK------- 422 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 422 (480)
+.+.+..+.|...|+.....+... +.++++.+.+.......+. |...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccc
Confidence 555555555555555544444433 3355566666655554422 455554433333333
Q ss_pred ----CChHHHHHHHHHHHHcCCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHhhhC
Q 011652 423 ----GIVSDSCVLLEDMIEKGIRPSG-ETFGKLRK---LLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 423 ----g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~---~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
+.++++++.++++.+.. |+. ..+..++. +....|..+++..++.++.++++
T Consensus 248 ~~~~~~l~~el~~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 34566777777776543 332 22222221 11235666777777777777664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-06 Score=64.73 Aligned_cols=110 Identities=8% Similarity=-0.075 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
+..+..+...+...|++++|...|+......+.+...+..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45666677777777777777777777777666667777777777777777777777777776654 44566677777777
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
...|++++|...+++..+..+.+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7777777777777777665444554444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.4e-07 Score=77.13 Aligned_cols=187 Identities=9% Similarity=-0.071 Sum_probs=108.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHhcCCCCC----------------
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCII-------MRKYARVQKVEEAVYTFNVMQKYGVTQN---------------- 165 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------- 165 (480)
..++.+.|.+.|.++...+|.....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 56777778888888777777777777766 4555555555555555554443 1111
Q ss_pred ------HHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCC--Chhh
Q 011652 166 ------LAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNP--DIVT 237 (480)
Q Consensus 166 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 237 (480)
......+..++...|++++|.++|+.+....+-+. ....+...+.+.+++++|+..|+...... .| ....
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 12334455666677777777777777665433233 55555556666777777777766443321 11 0224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHhhccCCHHHHHHHHHHHHHC
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVCRPT--SFIYSVLVHTYGVENRIEDAVDTFLEMEKN 299 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (480)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55556666666777777776666654322132 224444555666666666666666666654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.8e-07 Score=76.52 Aligned_cols=128 Identities=8% Similarity=-0.094 Sum_probs=73.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcC
Q 011652 346 ILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS--MHTFSVLINGLCDKG 423 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 423 (480)
+...+...|++++|.++|+.+....+-+. ....+...+.+.+++++|+..|+...... .|. ...+..+..++...|
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence 44555666777777777666654332222 44455556666677777777776444321 110 234555666666777
Q ss_pred ChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 424 IVSDSCVLLEDMIEKGIRPS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 424 ~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
++++|+..|++.......|. .........++.+.|+.++|...++++...++
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 77777777776664322143 22444555666667777777777776666544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-06 Score=79.16 Aligned_cols=131 Identities=9% Similarity=-0.079 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 011652 304 DVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN--------------SRTCNIILNGLIGRGETDEAYRVFRRMIKL 369 (480)
Q Consensus 304 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 369 (480)
+...+..+...|.+.|++++|...|++..+...... ...+..+..++.+.|++++|+..++++.+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677777888888888888888888877532211 245555555566666666666666666555
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHH
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS-CVLLEDM 435 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 435 (480)
.+.+...|..+..+|...|++++|...|+++.+.... +...+..+..++.+.|+.++| ...++.|
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666666666666655554321 445555555555555555555 2344444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.2e-07 Score=67.73 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...|......+.+.|++++|...|++.....+.+...|..+..++...|++++|+..++...+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34455555666666666666666666666655566666666666666666666666666666543 34455566666666
Q ss_pred HccCChhhHHHHHHHhhc
Q 011652 177 CKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~ 194 (480)
...|++++|...|++...
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666665544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=6.8e-07 Score=80.43 Aligned_cols=123 Identities=8% Similarity=-0.051 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---------------VETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
+...|..+...+.+.|++++|...|++.....+.+ ..+|..+..++.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34456666666666666666666666666555522 355555555555555555555555555554
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHH
Q 011652 161 GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
. +.+..++..+..+|...|++++|...|++..+..+.+...+..+..++.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 334455555555555555555555555555544344445555555555555555444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.5e-07 Score=70.17 Aligned_cols=98 Identities=13% Similarity=-0.001 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...+..+...+...|++++|...|+.+....+.+...|..+..+|...|++++|...|++....+.. +...+..+..+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 3455667778889999999999999999888889999999999999999999999999999886533 667888889999
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 011652 420 CDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~ 438 (480)
...|++++|...|+++++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998864
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-07 Score=75.70 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHhhc------CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc----CCCC--C
Q 011652 167 AAFNGLLSALCKSKNVRKAQEIFDCMKD------RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT----GCNP--D 234 (480)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~ 234 (480)
.++..+...+...|++++|...+++... ..+....++..+...+...|++++|...+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3344444444444444444444444332 00111233444444444555555555554444321 1000 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011652 235 IVTYGIMVDVLCKAGRVDEALGIVKSM 261 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (480)
...+..+...+...|++++|...+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 223344444555555555555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.6e-06 Score=64.22 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+......+.+.|++++|...|++..+..+.+...|..+..+|.+.|++++|...+++..+.+.. +...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 345555666777777777777777777766667777777777777777777777777777765422 5667777777777
Q ss_pred hcCChHHHHHHHHHHHHc
Q 011652 421 DKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~ 438 (480)
..|++++|...|+++.+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777777777653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.3e-06 Score=61.81 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+...|++++|...++......+.+...+..+..++...|++++|...+++..+... .+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34555566666677777777777776665566666777777777777777777777777666542 25666667777777
Q ss_pred hcCChHHHHHHHHHHHHc
Q 011652 421 DKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~ 438 (480)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 777777777777777654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-06 Score=65.04 Aligned_cols=106 Identities=9% Similarity=0.038 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF--IPS----MHTFSVL 415 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~l 415 (480)
.+..+...+.+.|++++|+..|+++.+..|.+...|..+..+|...|++++|.+.+++..+.+. .++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555667777778888888888887776677777888888888888888888888877765321 111 2356677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 011652 416 INGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGK 449 (480)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 449 (480)
..++...|++++|++.|++.+.. .|++.+...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 77788888888888888888763 456655443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=67.75 Aligned_cols=98 Identities=6% Similarity=-0.044 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
+...+..+...+.+.|++++|...|+.....++.+...|..+..++...|++++|+..|+...+.+ +.+...+..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 344555566666777777777777777777766677777777777777777777777777776654 4456666667777
Q ss_pred HHccCChhhHHHHHHHhhc
Q 011652 176 LCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~ 194 (480)
+...|++++|...|+....
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776655
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=64.46 Aligned_cols=99 Identities=14% Similarity=-0.003 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ--NLAAFNGLL 173 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll 173 (480)
+...|..+...+.+.|++++|...|++.....+.+..++..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344555566666677777777777777666665566666666666666677777777666666543 33 455666666
Q ss_pred HHHHcc-CChhhHHHHHHHhhcC
Q 011652 174 SALCKS-KNVRKAQEIFDCMKDR 195 (480)
Q Consensus 174 ~~~~~~-~~~~~a~~~~~~~~~~ 195 (480)
.++... |++++|.+.++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-06 Score=64.80 Aligned_cols=114 Identities=11% Similarity=-0.110 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---VETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNG 171 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 171 (480)
.+...+..+...+.+.|++++|.+.|++.....+.+ ...+..+...+...|++++|+..++...+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 467777778888888888888888888887766543 6777777778888888888888888777654 445667777
Q ss_pred HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011652 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
+..++...|++++|...|++.....+.+...+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77778888888888888877766444455555544443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=8.6e-06 Score=62.23 Aligned_cols=98 Identities=14% Similarity=-0.024 Sum_probs=70.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
+...+..+...+...|++++|...|+......+.+...|..+..++...|++++|...+++..+.+.. +...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 45566666677777777777777777777766666777777777777777777777777777765422 56677777777
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 011652 419 LCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~ 437 (480)
+...|++++|...|+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00022 Score=62.84 Aligned_cols=165 Identities=5% Similarity=-0.031 Sum_probs=94.5
Q ss_pred hcCChh-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 109 KIRQYQ-IMWDLVNAMRTKRMLNVETFCIIMRKYARVQK----------VEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 109 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
+.|.++ +|+.+++.+...+|-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-..++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 344443 56777777776666666666554444433332 456666666666654 446666666555555
Q ss_pred ccC--ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCC-hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc------
Q 011652 178 KSK--NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPN-LPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA------ 248 (480)
Q Consensus 178 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 248 (480)
..+ +++++..+++.+.+..+.|..+|+.-.-.+...|. ++++++.++++++..+. |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc
Confidence 555 36677777777766556666666666666666666 46777777777665433 555565544444333
Q ss_pred --------CCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 011652 249 --------GRVDEALGIVKSMDSTVCRPTSFIYSVL 276 (480)
Q Consensus 249 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (480)
+.++++++.+....... +-|...|+.+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 23455555555555443 3344444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-06 Score=68.60 Aligned_cols=98 Identities=13% Similarity=0.039 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
+...|..+...+.+.|++++|++.|++.....+.+...|..+...+...|++++|+..|++..+.. +.+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455666677777777777777777777777666667777777777777777777777777776654 4456667777777
Q ss_pred HHccCChhhHHHHHHHhhc
Q 011652 176 LCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~ 194 (480)
+...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 7777777777777777665
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.7e-06 Score=65.70 Aligned_cols=97 Identities=15% Similarity=0.066 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+...|++++|+..|++..+..+.+...|..+..+|...|++++|...+++..+.... +...|..+..+|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 345555556666666666666666666655556666666666666666666666666666655422 4566666666666
Q ss_pred hcCChHHHHHHHHHHHHc
Q 011652 421 DKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~ 438 (480)
..|++++|...|++.++.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 666666666666666643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=71.53 Aligned_cols=121 Identities=9% Similarity=-0.123 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNV----------------ETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
..+..+...+.+.|++++|...|++.....+.+. .++..+..++...|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455555666666777777777776665544222 455555555556666666666665555543
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHH
Q 011652 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 162 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
+.+..++..+..++...|++++|...|++.....+.+...+..+..++...++.+++
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555666555555555543344444555554444444443333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=66.63 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.++..|..+...+...|++++|...|+......+.+...|..+...+...|++++|+..++...+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3566666667777777777777777777666666666667777777777777777777776666654 445566666666
Q ss_pred HHHccCChhhHHHHHHHhhc
Q 011652 175 ALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~ 194 (480)
++...|++++|...|++...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666777766666666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-06 Score=64.66 Aligned_cols=102 Identities=9% Similarity=0.029 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HHHH
Q 011652 374 ADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG--IRPS----GETF 447 (480)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~ 447 (480)
...+..+...+.+.|++++|.+.|++..+.... +...|..+..+|...|++++|+..+++.++.. ..++ ..++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 346778899999999999999999999987533 68899999999999999999999999998642 1222 2357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 448 GKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
..+..++...|++++|.+.+++..+..+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 77888899999999999999998776554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.47 E-value=5e-06 Score=60.76 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP--SMHTFSVLIN 417 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~ 417 (480)
...+..+...+...|++++|...++++.+..+.+...+..+..++...|++++|.+.+++..+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 44555666666777777777777777766556666677777777777777777777777766653 12 3566666667
Q ss_pred HHHhc-CChHHHHHHHHHHHHc
Q 011652 418 GLCDK-GIVSDSCVLLEDMIEK 438 (480)
Q Consensus 418 ~~~~~-g~~~~A~~~~~~~~~~ 438 (480)
++... |++++|.+.+++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 77777 7777777777776654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.4e-06 Score=64.56 Aligned_cols=111 Identities=9% Similarity=0.086 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF--IPS----MHTFSV 414 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~ 414 (480)
..+..+...+...|++++|...++.+.+..+.+...+..+...+...|++++|...++++..... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34556666777777788888777777776666777777788888888888888888877765421 112 567777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
+..++...|++++|...|+++.+.. |+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 7888888888888888888887743 455555444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=4.6e-06 Score=68.60 Aligned_cols=139 Identities=7% Similarity=-0.087 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
...+..+...+...|++++|...|.+..+.... +. .+... ....-. .. .....|..+..+|
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~--------~~~~~~---~~------~~~~~~~~la~~~ 98 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ--------ILLDKK---KN------IEISCNLNLATCY 98 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH--------HHHHHH---HH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh--------hHHHHH---HH------HHHHHHHHHHHHH
Confidence 445556666677777777777777777664221 11 00000 000000 00 0023445555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLK 464 (480)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 464 (480)
...|++++|...+++...... .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.+++.
T Consensus 99 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 99 NKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554431 244555555555555555555555555555432 123344444444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-06 Score=63.19 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011652 100 YHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKS 179 (480)
Q Consensus 100 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (480)
+..+...+.+.|++++|...|++.....+.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 44455667778888888888888887777777788888888888888888888888877764 44667777777778888
Q ss_pred CChhhHHHHHHHhhcC
Q 011652 180 KNVRKAQEIFDCMKDR 195 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~ 195 (480)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888777653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=4.2e-06 Score=62.54 Aligned_cols=94 Identities=6% Similarity=-0.059 Sum_probs=62.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+..+...+.+.|++++|...++++.+..+.+...|..+..++...|++++|...+++..+.... +...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4445555666777777777777776666666677777777777777777777777776665422 555666666667777
Q ss_pred CChHHHHHHHHHHHH
Q 011652 423 GIVSDSCVLLEDMIE 437 (480)
Q Consensus 423 g~~~~A~~~~~~~~~ 437 (480)
|++++|...++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776664
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.6e-05 Score=71.17 Aligned_cols=164 Identities=9% Similarity=0.043 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CccH----HHHHHHHHHhhccCCHHHHHHHHHHHHH----CCCCC-CHHH
Q 011652 238 YGIMVDVLCKAGRVDEALGIVKSMDSTVC-RPTS----FIYSVLVHTYGVENRIEDAVDTFLEMEK----NGILA-DVAM 307 (480)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~ 307 (480)
+..+...|...|++++|.+.+..+...-. .++. .+.+.+...+...|+++.+..++..... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566667777777777777766543210 1111 1233334445556777777777766532 22222 2445
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhC--CC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHh---cCCCC----HH
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMNSK--GV--AP-NSRTCNIILNGLIGRGETDEAYRVFRRMIK---LCEAD----AD 375 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~--~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~ 375 (480)
+..+...|...|++++|..++.++... +. .+ ....+..++..|...|++++|..+++.... ....+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777778888887777766542 11 11 133566677777778888888877777665 22222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45556666667777877777766554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.5e-05 Score=60.35 Aligned_cols=96 Identities=9% Similarity=-0.024 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMM 380 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 380 (480)
...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++...+..+.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444444445555555555544443 222 23334444444444444444444444444333344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 011652 381 IKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
..++...|++++|...|++...
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.4e-05 Score=72.08 Aligned_cols=196 Identities=8% Similarity=-0.056 Sum_probs=111.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCccH----------------HHHHHHHHHhhccCCHHHHHHHHHHHHHCC-CCCC
Q 011652 242 VDVLCKAGRVDEALGIVKSMDSTVCRPTS----------------FIYSVLVHTYGVENRIEDAVDTFLEMEKNG-ILAD 304 (480)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 304 (480)
.+.+.+.|++++|++.+..+.+....... ..+..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788888888888888765422111 135566777777777777777777654321 1111
Q ss_pred HH----HHHHHHHHHHHcCCHhHHHHHHHHHHh----CCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHh---c---
Q 011652 305 VA----MYNALIGAFCKANKFKNVYRVLKDMNS----KGVAPN-SRTCNIILNGLIGRGETDEAYRVFRRMIK---L--- 369 (480)
Q Consensus 305 ~~----~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--- 369 (480)
.. +.+.+...+...|+.+.+..++..... .+..+. ..++..+...+...|++++|..+++.+.. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 112222223345667777777666543 122222 33555666677777777777777776655 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIPS--MHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.+....++..+++.|...|++++|..++++.... +.+|. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1112345666677777777777777777665431 11111 23445555556666777777776666643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.34 E-value=7.8e-06 Score=61.67 Aligned_cols=97 Identities=7% Similarity=0.035 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCC----HHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGV--TQN----LAAFNG 171 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 171 (480)
..|..+...+...|++++|...|++.....+.+...+..+...+...|++++|...++...+... +++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555555566666666666666666555555555555566666666666666666655544321 111 334444
Q ss_pred HHHHHHccCChhhHHHHHHHhhc
Q 011652 172 LLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
+..++...|++++|...|+....
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44455555555555555554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-05 Score=60.40 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=50.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHH
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNV---ETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN---LAAFNGLLSAL 176 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~ 176 (480)
+...+.+.|++++|...|+.+....+.+. .++..+...+...|++++|+..|+.+.+.. +.+ ..++..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34455556666666666666655444222 455555556666666666666666655543 222 34455555555
Q ss_pred HccCChhhHHHHHHHhhcC
Q 011652 177 CKSKNVRKAQEIFDCMKDR 195 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~ 195 (480)
...|++++|...|+.+...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5566666666666555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.8e-05 Score=57.84 Aligned_cols=93 Identities=10% Similarity=0.101 Sum_probs=61.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIKLCEADA---DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPS---MHTFSVLING 418 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~ 418 (480)
.+...+...|++++|...|+.+.+..+.+. ..+..+..++...|++++|...++++...... + ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 344556666777777777777666444444 56666677777777777777777777664321 2 4556666777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 011652 419 LCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~ 438 (480)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-05 Score=63.44 Aligned_cols=134 Identities=15% Similarity=0.019 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK----RFIP-SMH 410 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~ 410 (480)
++..+...+...|++++|...+++..+. ..++ ..++..+...+...|++++|.+.+++.... +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555555441 0111 135566666677777777777777665532 1110 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEK----GIRP-SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
.+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5666677777778888888877777632 1111 123466677778888888888888888776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.23 E-value=5.5e-06 Score=78.29 Aligned_cols=119 Identities=10% Similarity=-0.009 Sum_probs=85.8
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (480)
..+.+.|++++|.+.++++.+..+.+...|..+..+|.+.|++++|.+.+++..+.... +...|..+..+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 34567788888888888888877777888888888888888888888888888876532 67788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 011652 428 SCVLLEDMIEKGIRPSGETFGKLRKL--LIKEGREDVLKFLQE 468 (480)
Q Consensus 428 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 468 (480)
|.+.|+++.+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888865321 23334444444 777788888888877
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=9e-06 Score=63.99 Aligned_cols=130 Identities=14% Similarity=0.047 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhc--CCCC----HHH
Q 011652 308 YNALIGAFCKANKFKNVYRVLKDMNSKGVA-PN----SRTCNIILNGLIGRGETDEAYRVFRRMIKL--CEAD----ADT 376 (480)
Q Consensus 308 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~ 376 (480)
+..+...+...|++++|...+.+..+.... ++ ...+..+...+...|++++|...++..... ...+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444555555555555555554432100 01 124555556666666666666666665541 1111 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKLK----RFIP-SMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777777788888888777766532 1111 134566777788888888888888887764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-06 Score=80.32 Aligned_cols=120 Identities=11% Similarity=-0.027 Sum_probs=83.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (480)
...+.+.|++++|.+.|++..+..+.+..+|..+...+.+.|++++|++.+++..+.. +.+..++..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445567788888888888777777677777888888888888888888887777764 456677777777777888888
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHH--hhcCCChhHHHHHHH
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEG--WGKDPNLPRAREIFR 224 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 224 (480)
+|.+.|++..+..+.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888877766444455566655555 666777777777776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-05 Score=74.71 Aligned_cols=122 Identities=9% Similarity=-0.049 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLN---------------VETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
...|..+...+.+.|++++|...|++.....+.+ ..+|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4456666666777777777777777766554422 3445555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHH
Q 011652 162 VTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRA 219 (480)
Q Consensus 162 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (480)
+.+...|..+..+|...|++++|...|++..+..+.+...+..+..++.+.++.+++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555444344444444444444444444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2.4e-05 Score=71.13 Aligned_cols=139 Identities=9% Similarity=-0.074 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
..+..+...+.+.|++++|...|++..+. .+.. ..... .....+..+.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~-------~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAE-------DADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSC-------HHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccC-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666667777777666666542 0000 00000 01111122344567888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011652 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKF 465 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 465 (480)
+.|++++|.+.++++.+... .+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988887653 267788888888899999999999999888754 2356666677777777777666654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.4e-05 Score=61.89 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
.+...|..+..+|.+.|++++|...+++..+.+. .+...|..+..+|...|++++|...|++.++.
T Consensus 61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3446777778888888888888888888777653 26677777888888888888888888888764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=73.23 Aligned_cols=138 Identities=9% Similarity=-0.010 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
..|..+...+.+.|++++|+..|++..+... ........ +...+.. +.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~-----------~~~~~~~~-------~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE-----------GSRAAAED-------ADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHHHHSCH-------HHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-----------cCccccCh-------HHHHHHH-HHHHHHHHHHHHHHH
Confidence 3456666677777777777777776654100 00000000 0000010 223445555666666
Q ss_pred ccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011652 178 KSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
+.|++++|...+++..+..+.+...|..+..+|...|++++|...|++..+.... +...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666554555666666666666666666666666666654211 3444555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.9e-06 Score=61.72 Aligned_cols=84 Identities=7% Similarity=-0.125 Sum_probs=40.1
Q ss_pred cCChhHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHH
Q 011652 110 IRQYQIMWDLVNAMRTKR---MLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186 (480)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 186 (480)
.|++++|+..|++....+ +.+..++..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 344555555555555442 2334444555555555555555555555555443 333444555555555555555555
Q ss_pred HHHHHhhc
Q 011652 187 EIFDCMKD 194 (480)
Q Consensus 187 ~~~~~~~~ 194 (480)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3.5e-05 Score=72.43 Aligned_cols=131 Identities=9% Similarity=-0.090 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN--------------SRTCNIILNGLIGRGETDEAYRVFRRMIKLC 370 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (480)
...+..+...|.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..++++.+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34556666677777777777777777766422211 3567777888888888888888888888877
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHH
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCV-LLEDMI 436 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 436 (480)
+.+...|..+..+|...|++++|...|+++.+.... +...+..+..++.+.|+.+++.+ .++.|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888888888876422 45667777777777777776653 444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-05 Score=61.84 Aligned_cols=97 Identities=18% Similarity=0.110 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTK------------------RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
...+......+.+.|++++|+..|+..... .+.+..+|..+..++.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666677777888888888888776654 22223445555555555555555555555555
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
+.. +.+...|..+..+|...|++++|...|++...
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 543 33444555555555555555555555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00014 Score=70.11 Aligned_cols=168 Identities=6% Similarity=-0.030 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC--Ch
Q 011652 115 IMWDLVNAMRTKRMLNVETFCIIMRKYARVQK----------VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK--NV 182 (480)
Q Consensus 115 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~ 182 (480)
+|.+.++.+...++.+..+|+.--..+...|+ ++++++.++.+.+.. +-+..+|+.-.-++.+.+ ++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccH
Confidence 34444444444444444444444333333333 444444444444433 333444444444444444 33
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-------------
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP-NLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKA------------- 248 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------- 248 (480)
+++.+.++++.+..+.+..+|+.-.-.+.+.| .++++++.++++++..+. +...|+.....+.+.
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccccc
Confidence 44444444444433444444444444444444 444444444444443222 333443333333221
Q ss_pred -CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCC
Q 011652 249 -GRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENR 285 (480)
Q Consensus 249 -g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (480)
+.++++++.+++..... +-+...|..+-..+...++
T Consensus 205 ~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666665543 4455556555555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=9.9e-06 Score=60.04 Aligned_cols=87 Identities=18% Similarity=0.043 Sum_probs=70.2
Q ss_pred hCCChHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011652 352 GRGETDEAYRVFRRMIKL---CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDS 428 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 428 (480)
..|++++|+..|+++.+. .+.+...+..+..+|...|++++|...+++..+.... +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 458889999999999874 3556678889999999999999999999999887533 678888899999999999999
Q ss_pred HHHHHHHHHcC
Q 011652 429 CVLLEDMIEKG 439 (480)
Q Consensus 429 ~~~~~~~~~~~ 439 (480)
...+++.++..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999988653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.1e-06 Score=59.98 Aligned_cols=96 Identities=13% Similarity=-0.005 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC------HHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN------LAAF 169 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 169 (480)
+...|..+...+.+.|++++|.+.|++.....+.+..++..+..++...|++++|++.++...+.. +.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 456777888888888999999999998888877788888888888888999999999988888754 223 4555
Q ss_pred HHHHHHHHccCChhhHHHHHHHh
Q 011652 170 NGLLSALCKSKNVRKAQEIFDCM 192 (480)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~ 192 (480)
..+..++...|+.+.|...++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 56666666666666665554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.06 E-value=6.4e-05 Score=57.98 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEK-----GIRPS-GETF----GKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|...+++..++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 5555555555566666666655555543 01333 2334 455556666666666666666665554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-05 Score=71.51 Aligned_cols=114 Identities=11% Similarity=-0.021 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
...+..+...+.+.|++++|...|++.....+.+.. +...++.+++...+ . ..+|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 345666777788889999999999887765442210 01111112211111 0 12344455555
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
.+.|++++|...+++.....+.+...|..+..+|...|++++|...|++..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555544344455555555555555555555555555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-05 Score=71.73 Aligned_cols=150 Identities=7% Similarity=-0.058 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011652 305 VAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMF 384 (480)
Q Consensus 305 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (480)
...+..+...+.+.|++++|...|.+.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 445666666777788888888888877664 233221 112222333222211 13667777788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH-HhcCCHHH
Q 011652 385 CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG-ETFGKLRKLL-IKEGREDV 462 (480)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~-~~~g~~~~ 462 (480)
.+.|++++|...+++..+... .+...|..+..+|...|++++|...|+++++. .|+. ..+..+.... ...+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887776542 26677777888888888888888888877653 3333 3333343332 23455677
Q ss_pred HHHHHHHHHhhhC
Q 011652 463 LKFLQEKMNLLVK 475 (480)
Q Consensus 463 a~~~~~~~~~l~~ 475 (480)
+...++++.+..+
T Consensus 318 a~~~~~~~l~~~p 330 (338)
T 2if4_A 318 QKEMYKGIFKGKD 330 (338)
T ss_dssp -------------
T ss_pred HHHHHHHhhCCCC
Confidence 7777777766554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00037 Score=67.09 Aligned_cols=170 Identities=9% Similarity=-0.019 Sum_probs=141.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC--C
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQ----------YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ--K 146 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~ 146 (480)
+|++.++.+...++ -+..+|+..-..+.+.|+ ++++.+.++.+.+.++.+..+|..-...+.+.+ +
T Consensus 47 eal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 47 SVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 78999988877654 578889888888877777 999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcC------------
Q 011652 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSK-NVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKD------------ 213 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------ 213 (480)
++++++.++++.+.. +.+..+|+.-..++.+.| .++++.+.++++.+..+.+...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 799999999999986 668889998888888888 899999999999988888999998877776552
Q ss_pred --CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011652 214 --PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVD 252 (480)
Q Consensus 214 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (480)
+.++++++.+++.....+. |...|.-.-..+.+.++.+
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred cHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4578999999998876433 6777877777776666643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.00 E-value=9.6e-05 Score=57.01 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=68.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCC-------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-H
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEA-------D-----ADTYTMMIKMFCQGGELEKAFKVWKYMKLK-----RFIPS-M 409 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~-------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~-~ 409 (480)
..+.+.|++++|+..|++..+..+. + ...|..+..++.+.|++++|+..+++..+. .+.|+ .
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~ 98 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 98 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH
Confidence 3344445555555555554442111 2 237888888888888988888888888875 11344 4
Q ss_pred HHH----HHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCHHHHHHH
Q 011652 410 HTF----SVLINGLCDKGIVSDSCVLLEDMIEK-----GIRPSGETFGKL 450 (480)
Q Consensus 410 ~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l 450 (480)
..| .....++...|++++|+..|++.++. |+.+........
T Consensus 99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 99 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 677 88889999999999999999998753 455554444333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00047 Score=52.53 Aligned_cols=111 Identities=8% Similarity=0.037 Sum_probs=79.1
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 011652 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAF 394 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 394 (480)
+++++|...|++..+.|.. .. . +...|...+..++|.++|++..+. .++..+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-TH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4677788888887777522 22 2 556666667777788888777763 566777777777776 67788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 011652 395 KVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 439 (480)
+.|++..+.| +...+..+...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888877765 56677777777777 677888888888777765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.93 E-value=6.9e-05 Score=55.12 Aligned_cols=79 Identities=9% Similarity=-0.035 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 358 EAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.|...++++.+..+.+...+..+...|...|++++|...+++...... .+...|..+..++...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667776666666777777788888888888888888887776542 2566777777778888888888888877765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.6e-05 Score=69.76 Aligned_cols=61 Identities=7% Similarity=-0.147 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKL-----KRFI-P-SMHTFSVLINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
+++.|...|...|++++|..++++..+ .|.. | ...+++.|...|...|++++|..++++++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555555555555555555444332 1110 1 12344455555555555555555555444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=4e-05 Score=58.96 Aligned_cols=99 Identities=10% Similarity=0.022 Sum_probs=69.5
Q ss_pred hCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011652 352 GRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL----------EKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
+.+.+++|.+.++...+..|.+...|..+..++...+++ ++|+..|++..+.+.. +...|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 445567777777777776677777777777777766654 4788888877776533 56677778877776
Q ss_pred cC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011652 422 KG-----------IVSDSCVLLEDMIEKGIRPSGETFGKLRKL 453 (480)
Q Consensus 422 ~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 453 (480)
.| ++++|+..|+++++. .|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 54 788888888888874 5666655554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.85 E-value=8.5e-05 Score=69.79 Aligned_cols=124 Identities=14% Similarity=0.022 Sum_probs=86.3
Q ss_pred HHHHcCCHhHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHh----c----CCCCHHHHH
Q 011652 314 AFCKANKFKNVYRVLKDMNSK---GVAP----NSRTCNIILNGLIGRGETDEAYRVFRRMIK----L----CEADADTYT 378 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----~~~~~~~~~ 378 (480)
.+...|++++|..++++..+. -+.| ...+++.+..+|...|++++|+.++++... . .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888776542 1112 234677888888888888888888888765 1 122345678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 379 MMIKMFCQGGELEKAFKVWKYMKL-----KRFI-PS-MHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 379 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
.|...|...|++++|..++++..+ .|.. |+ ..+...+..++...+.+++|..++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999888887663 2421 11 23455566677778888888888888875
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.001 Score=50.65 Aligned_cols=110 Identities=9% Similarity=0.047 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCChHHHH
Q 011652 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIG----RGETDEAY 360 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 360 (480)
++++|.+.|++..+.|. +... +...|...+.+++|...|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34445555555444431 1211 3333334444444555555444432 33334444444444 44455555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011652 361 RVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 404 (480)
++|++..+. .++..+..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555544442 334444444444444 445555555555444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00023 Score=49.45 Aligned_cols=82 Identities=17% Similarity=0.124 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
+...|..+...+.+.|++++|...|++.....+.+..++..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345666777777778888888888887777666667777777777777888888888877777654 3455556555555
Q ss_pred HHc
Q 011652 176 LCK 178 (480)
Q Consensus 176 ~~~ 178 (480)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0001 Score=54.21 Aligned_cols=78 Identities=6% Similarity=-0.093 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011652 80 AFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
|+..|+.+....+ .+...|..+...+.+.|++++|...|++.....+.+...|..+...+...|++++|...|+...+
T Consensus 4 a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444544433322 34555555555555555555555555555555554455555555555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00016 Score=52.45 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
.+..+...+...|++++|...+++..+..+.+...+..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444444455555555555554444444444455555555555555555555554444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00047 Score=47.78 Aligned_cols=78 Identities=10% Similarity=0.111 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLI 455 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 455 (480)
.+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 444444455555555555555555444321 134444455555555555555555555554432 123334444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00043 Score=49.26 Aligned_cols=66 Identities=12% Similarity=-0.021 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 371 EADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
+.+...+..+..+|...|++++|...|+++.+.+.. +...|..+..+|...|++++|...|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566666777777777777777777776665422 455666677777777777777777776654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00023 Score=54.74 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=39.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011652 109 KIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKV----------EEAVYTFNVMQKYGVTQNLAAFNGLLSALCK 178 (480)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (480)
+.+.+++|.+.++...+.+|.+...|..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666655543 35555555555543 3344555555555554
Q ss_pred c
Q 011652 179 S 179 (480)
Q Consensus 179 ~ 179 (480)
.
T Consensus 93 l 93 (158)
T 1zu2_A 93 F 93 (158)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00073 Score=48.04 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQK 159 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 159 (480)
.++..|..+...+.+.|++++|+..|++..+.++.+..+|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36667777777777777788888777777777776666777777777777777777777776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0072 Score=53.57 Aligned_cols=141 Identities=10% Similarity=0.011 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHH--HcC---CHhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHh----CCCh-HHH---HHHHHHHH
Q 011652 302 LADVAMYNALIGAFC--KAN---KFKNVYRVLKDMNSKGVAPN-SRTCNIILNGLIG----RGET-DEA---YRVFRRMI 367 (480)
Q Consensus 302 ~~~~~~~~~li~~~~--~~~---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~----~~~~-~~a---~~~~~~~~ 367 (480)
+.+...|...+++.. ..+ +..+|..+|++..+. .|+ ...+..+..++.. .+.. ... ...++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 446667777776543 333 357888889888886 344 3344444444331 1111 111 11222211
Q ss_pred --hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 368 --KLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 368 --~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
...+.++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1446788888888777777789999999988888876 67777777788888889999999888888874 56676
Q ss_pred HHH
Q 011652 446 TFG 448 (480)
Q Consensus 446 ~~~ 448 (480)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0013 Score=46.37 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=33.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 381 IKMFCQGGELEKAFKVWKYMKLKRFIPSMH-TFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 381 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
...+...|++++|.+.++++.+... .+.. .+..+..+|...|++++|...|+++++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445556666666666666655432 1444 5666666666666666666666666654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.034 Score=49.30 Aligned_cols=142 Identities=13% Similarity=0.104 Sum_probs=83.8
Q ss_pred CccHHHHHHHHHHhh--ccC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH---cC--CHhHH---HHHHHHHH
Q 011652 267 RPTSFIYSVLVHTYG--VEN---RIEDAVDTFLEMEKNGILAD-VAMYNALIGAFCK---AN--KFKNV---YRVLKDMN 332 (480)
Q Consensus 267 ~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~~--~~~~a---~~~~~~~~ 332 (480)
+.+...|...+.+.. ..+ +..+|..+|++..+. .|+ ...|..+..+|.- .+ ..... ...+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 455666666665543 222 346788888887765 343 3444444433321 11 11111 11122111
Q ss_pred hC-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011652 333 SK-GVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHT 411 (480)
Q Consensus 333 ~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 411 (480)
.. ..+.+...+..+...+...|++++|...++++.... |+...|..+...+.-.|++++|.+.+++....+ |...+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcCh
Confidence 11 123356666666666666788888888888888743 677777777788888888888888888877754 66666
Q ss_pred HH
Q 011652 412 FS 413 (480)
Q Consensus 412 ~~ 413 (480)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00083 Score=47.50 Aligned_cols=58 Identities=7% Similarity=0.190 Sum_probs=41.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVE-TFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
...+.+.|++++|...|+......+.+.. .+..+...+...|++++|++.|+...+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44556677777777777777776666666 77777777777777777777777776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0023 Score=59.07 Aligned_cols=86 Identities=9% Similarity=-0.088 Sum_probs=60.7
Q ss_pred hCCChHHHHHHHHHHHh----cCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHH
Q 011652 352 GRGETDEAYRVFRRMIK----LCEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKL-----KRF-IPS-MHTFSVLI 416 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~l~ 416 (480)
..|++++|+.++++..+ ...| ...+++.|..+|...|++++|..+++++.. .|. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677888888777665 1111 235678888888888888888888887663 231 122 35678888
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 011652 417 NGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~ 437 (480)
..|...|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888998888888888764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0079 Score=61.05 Aligned_cols=126 Identities=10% Similarity=0.080 Sum_probs=67.5
Q ss_pred HhcCCHHHHHH-HHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011652 246 CKAGRVDEALG-IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNV 324 (480)
Q Consensus 246 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 324 (480)
...+++++|.+ ++..+. +......++..+.+.|..+.|.++.+.-. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 44566666655 442111 01122555666666777777665542111 012234556777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011652 325 YRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 325 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 403 (480)
.++.+.+ .+...|..+...+.+.++++.|+++|..+.. |..+...|...|+.+...++.+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7665332 2556777777777777777777777776643 333344444455555544444444433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.069 Score=39.10 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=40.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI 406 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 406 (480)
+...+...+..+...|..+.-.+++..+....+|++...-.+..+|.+.|+..+|.+++.++.+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33445555556666666666666666655555666666666666666666666666666666666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0064 Score=56.17 Aligned_cols=87 Identities=10% Similarity=-0.045 Sum_probs=51.8
Q ss_pred HHhCCChHHHHHHHHHHHhc----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKL----CEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKL-----KRF-IPS-MHTFSV 414 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~ 414 (480)
+.+.|++++|+.++++..+. ..+ ...+++.+...|...|++++|..+++++.. .|. .|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556666666666665541 111 234566667777777777777777666543 121 122 245667
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLEDMI 436 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~ 436 (480)
|...|...|++++|..+++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 7777777777777777777665
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.044 Score=55.56 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=87.1
Q ss_pred HHhcCChhHHHH-HHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhH
Q 011652 107 LAKIRQYQIMWD-LVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKA 185 (480)
Q Consensus 107 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (480)
....+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+. .. .-.......|+++.|
T Consensus 609 ~~~~~~~~~a~~~~l~~i-----~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-----EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLA 671 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-----CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHhcC-----CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHH
Confidence 345677777766 44211 1133346677777777888877765421 11 112334556888888
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011652 186 QEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTV 265 (480)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (480)
.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+.....|
T Consensus 672 ~~~~~~~~-----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 672 RDLLTDES-----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhC-----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77765543 667788888888888888888888877653 3444555555666666555544444433
Q ss_pred CCccHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 266 CRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
. ++....+|.+.|++++|.+++.+
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 22223334444555555544433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0094 Score=55.03 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=69.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCC---CCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHh----cC----CCCHHH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKG---VAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIK----LC----EADADT 376 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----~~~~~~ 376 (480)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|+.+++++.. .. +....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999998887641 2222 34678888899999999999999998876 11 223457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 377 YTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 377 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
++.|...|...|++++|..+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999987764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.018 Score=39.93 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 95 HSVRAYHSMIESLAKIRQ---YQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
.++..+..+..++...++ .++|..++++....++.+..+...+...+...|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566777777776654443 6778888888877777777777777777788888888888888777654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.016 Score=40.20 Aligned_cols=67 Identities=4% Similarity=-0.097 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011652 371 EADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEK 438 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (480)
+.++..+..+..++...++ .++|..++++....+.. +......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555555555543333 45555555555554422 4445555555555555555555555555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0054 Score=56.57 Aligned_cols=85 Identities=8% Similarity=-0.036 Sum_probs=62.5
Q ss_pred cCCHhHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHh----c----CCCCHHHHHHHHH
Q 011652 318 ANKFKNVYRVLKDMNSK---GVAPN----SRTCNIILNGLIGRGETDEAYRVFRRMIK----L----CEADADTYTMMIK 382 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----~~~~~~~~~~l~~ 382 (480)
.|++++|..++++..+. -+.|+ ..+++.+..+|...|++++|+.+++++.. . .+....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 56788888888776552 12222 35678888888889999999988888776 1 1223456888899
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 011652 383 MFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~ 402 (480)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999998887754
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.013 Score=44.59 Aligned_cols=93 Identities=9% Similarity=0.025 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 011652 355 ETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGG---ELEKAFKVWKYMKLKRFIP--SMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 429 (480)
....+.+-|.+.....+++..+...+..++++.+ +++++..+++...+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666655678888888888888887 5668888888887754 23 3455666777888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHH
Q 011652 430 VLLEDMIEKGIRPSGETFGKL 450 (480)
Q Consensus 430 ~~~~~~~~~~~~p~~~~~~~l 450 (480)
++++.+++. .|+..--..+
T Consensus 92 ~y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHH
Confidence 999888874 5554433333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.02 Score=43.48 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=48.5
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 011652 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRG---ETDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQGGELEKAFK 395 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 395 (480)
...+.+-|.+..+.|. ++..+.-.+..++++.+ +.+++..+++...+...| +...+-.+.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445555555555444 45555555666666666 445666666666664322 34555556666667777777777
Q ss_pred HHHHHHhCC
Q 011652 396 VWKYMKLKR 404 (480)
Q Consensus 396 ~~~~~~~~~ 404 (480)
.++.+.+..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 777766643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.037 Score=39.32 Aligned_cols=67 Identities=4% Similarity=-0.040 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTK-------RMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYG 161 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 161 (480)
.++..+..+...+.+.|++..|...|+...+. +.....++..+..++.+.|+++.|...++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 46667777788888888888888888776543 22556677777777788888888888887777653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.15 Score=39.82 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=60.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (480)
.+.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 34456677777777776655 2566777777777777777777777766553 233444555566665
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHH
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFRE 225 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (480)
...++-+..... .-++.....+...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~-----g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTR-----EDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHT-----TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-----ccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555444433321 1244444555556666666666543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.13 Score=40.10 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=55.9
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011652 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEAL 255 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 255 (480)
....|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.++..
T Consensus 15 AL~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 345566666666666553 556666666666666666666666665542 334444455556665555
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHH
Q 011652 256 GIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLE 295 (480)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (480)
++-+.....| -++....++...|+++++.++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544444333 133334444555666666666644
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.38 Score=40.98 Aligned_cols=84 Identities=7% Similarity=0.018 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhcc-CCHH
Q 011652 217 PRAREIFREMVDTGCNPD---IVTYGIMVDVLCK-----AGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVE-NRIE 287 (480)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 287 (480)
..|...+++.++. .|+ ...|..+...|.. .|+.++|.+.|++....+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555556666553 344 4456666666666 377777777777777654222355566666666663 7777
Q ss_pred HHHHHHHHHHHCCCC
Q 011652 288 DAVDTFLEMEKNGIL 302 (480)
Q Consensus 288 ~a~~~~~~~~~~~~~ 302 (480)
++.+.+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777777665544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.033 Score=39.59 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011652 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR------FIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSG 444 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 444 (480)
.+..-+..+...+...|++..|...++.+.+.. -.+....+..+..++.+.|+++.|..+++++.+. .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 456667788999999999999999999877531 1235678899999999999999999999999874 4544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.055 Score=45.98 Aligned_cols=109 Identities=12% Similarity=0.173 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHH
Q 011652 356 TDEAYRVFRRMIKLCEA--DADTYTMMIKMFCQG-----GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK-GIVSD 427 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~ 427 (480)
...|...++++.+..+. +...|..+...|.+. |+.++|.+.|++..+.+..-+..++..+...++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666666653333 355777888888774 88888888888888765322367777777877774 88888
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 428 SCVLLEDMIEKGIR--PSGETFGKLRKLLIKEGREDVLKFLQEKMNL 472 (480)
Q Consensus 428 A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 472 (480)
+.+.+++.+..... |+....+. +.-++|..+++++..
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHH
Confidence 88888888876665 55433332 223555555555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.18 Score=37.90 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011652 388 GELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 388 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 442 (480)
+++++|.++|+.+....-.- ...|......-.++|+...|.+++.+.+..+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665432222 5555555555566677777777777766655443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.2 Score=37.54 Aligned_cols=53 Identities=9% Similarity=0.000 Sum_probs=27.7
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 011652 214 PNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCR 267 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (480)
++.++|.++|+.+++.+-.- ...|......-.+.|+...|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45556666666555432121 444444444455566666666666666555433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.082 Score=38.57 Aligned_cols=88 Identities=6% Similarity=-0.074 Sum_probs=55.4
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChH
Q 011652 351 IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK---AFKVWKYMKLKRFI-PSMHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~ 426 (480)
........+.+-+........++..+-..+..++++..+... ++.+++.+...+.+ -.....-.+.-++.+.|+++
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 333445555555655555445777777777777777776555 77777777665311 12234445566777888888
Q ss_pred HHHHHHHHHHHc
Q 011652 427 DSCVLLEDMIEK 438 (480)
Q Consensus 427 ~A~~~~~~~~~~ 438 (480)
+|.++++.+++.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.54 E-value=2.4 Score=42.84 Aligned_cols=271 Identities=9% Similarity=-0.013 Sum_probs=149.3
Q ss_pred HHccCChhhHHHHHHHhhcC---CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCC--C-----CChhhHHHH--HH
Q 011652 176 LCKSKNVRKAQEIFDCMKDR---FIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGC--N-----PDIVTYGIM--VD 243 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l--~~ 243 (480)
....|+.+++..+++..... ..+....-..+.-+....|..+++..++.......- . +....-..+ .-
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 45667777777777665431 111222333344455566666678887777664311 0 001111122 22
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCccH--HHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcC
Q 011652 244 VLCKAGRVDEALGIVKSMDSTVCRPTS--FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGA--FCKAN 319 (480)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~ 319 (480)
+|.-.++ +++.+.+..+.... .+.. ..-.++...+.-.|+.+....++..+.+. .+......+..+ +...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCC
Confidence 2233334 45555555555432 1111 11223344455678888888888777653 233344434443 44678
Q ss_pred CHhHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011652 320 KFKNVYRVLKDMNSKGVAPNSRTC--NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVW 397 (480)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 397 (480)
+.+.+..+++.+... ..|....- ..+..+|+..|+.....+++..+.+....+..-...+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888888764 12222222 233456778889888888998888744444444444555555677777778888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011652 398 KYMKLKRFIPSMHTFSVLINGLCDKGIV-SDSCVLLEDMIEKGIRPSGETFGKLRKLLIK 456 (480)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 456 (480)
..+.+.+ .|.+..-..+.-+....|.. .++...+..+.. .++..+-...+.++..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 7666654 34444444444444545543 578888888864 3456555555555544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.14 E-value=6.8e-05 Score=67.77 Aligned_cols=266 Identities=12% Similarity=0.109 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHH
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEG 209 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (480)
.+..|..|..+....+++.+|++.|-+ ..|+..|..++.+..+.|.+++-...+....+. ..++..=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 444566666666666666665544321 123344556666666666666666655544432 2244445566666
Q ss_pred hhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHH
Q 011652 210 WGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDA 289 (480)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (480)
|++.++..+..+++ -.|+..-...+.+-|...|.++.|.-+|..+.. |.-|..++...|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 66666655433322 124555555666666666666666555543322 23344455566666655
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 011652 290 VDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKL 369 (480)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 369 (480)
.+.-++ ..++.||..+-.+|...+.+.-|.-.--.+.-. ......++..|...|.+++-+.+++.....
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 433221 235667888888888888887766554444432 223444666788888899888888888766
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChHHHHH
Q 011652 370 CEADADTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIP------SMHTFSVLINGLCDKGIVSDSCV 430 (480)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 430 (480)
-....-+|+.|.-.|++- ++++..+-++..-.+ +++- ....|..++-.|++-.+++.|..
T Consensus 259 ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 667888888888888876 555555555443222 2221 23457777777777777776643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.69 Score=33.98 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=68.8
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHH
Q 011652 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221 (480)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (480)
.-.|..++..++..+..+. .+..-+|-+|--....-+-+...++++.+-.-+.. ...|+......
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------s~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------DKCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------GGCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc------------HhhhcHHHHHH
Confidence 3456677777777666653 23344444443333344444455555554432211 11233333333
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC
Q 011652 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301 (480)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (480)
.+-.+- .+.......++.....|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 222221 13334444555556666666666666664332 245555555666666666666666666666655554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.32 Score=35.43 Aligned_cols=68 Identities=16% Similarity=-0.030 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 407 PSMHTFSVLINGLCDKGIVSD---SCVLLEDMIEKGIRP--SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
|+..+-..+..++.++....+ ++.++++....+ .| .....-.+.-++.+.|+++.|.+.++.+.+..+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 344444445555555444333 444454444332 11 112223344445555555555555555544433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.00012 Score=66.28 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=136.5
Q ss_pred ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 011652 199 DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVH 278 (480)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (480)
.+.+|..|..+....+.+.+|++-|-+. -|...|..++.+..+.|.+++-.+.+...++.. .++..=+.|+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 4566777777777777776666544222 155566777777777777777777776666542 23344456777
Q ss_pred HhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--------------------CCCC
Q 011652 279 TYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK--------------------GVAP 338 (480)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------------------~~~p 338 (480)
+|++.++..+..+.+ -.|+..-...+.+-|...|.++.|.-+|..+..- ...-
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777777665433322 1244444555566666666666665555433210 1123
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011652 339 NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLING 418 (480)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (480)
++.||..+-.+|...+.+.-|...--.+.- .+.-...++..|-..|.+++-..+++.-.... .....+|+.|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 678999999999999998887665444432 22233456778889999999999999877432 2477899999998
Q ss_pred HHhcCChHHHHHHHHH
Q 011652 419 LCDKGIVSDSCVLLED 434 (480)
Q Consensus 419 ~~~~g~~~~A~~~~~~ 434 (480)
|++- ++++..+.++.
T Consensus 273 YsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 273 YSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHSS-CTTHHHHHHTT
T ss_pred HHhc-CHHHHHHHHHH
Confidence 8875 35555555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.83 E-value=0.27 Score=33.80 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
.=+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++.+..+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33555556666666667777777777777777777777777777776644444444555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.3 Score=44.30 Aligned_cols=52 Identities=6% Similarity=0.073 Sum_probs=25.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011652 106 SLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVM 157 (480)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 157 (480)
.+...|+++++...+..+....|.+...|..+|.++.+.|+..+|++.|+.+
T Consensus 180 ~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 180 AEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344445555554444444444444445555555555555555555544443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.42 E-value=1.2 Score=32.69 Aligned_cols=75 Identities=9% Similarity=-0.028 Sum_probs=47.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 369 LCEADADTYTMMIKMFCQGGEL---EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
+..|++.+--.+..++++..+. .+++.+++.+...+..-.-..+-.+.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 4456666666677777776543 45677777766554211234555566677777888888887777776 345543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.98 E-value=1.4 Score=43.43 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=41.9
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
-|...|+++-|+++-++...-.|.+..+|..|..+|...|+++.|+-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35567888888888888877777778888888888888888888888877663
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.91 E-value=1 Score=31.00 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=38.1
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011652 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMI 381 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 381 (480)
.=++.+-++.+...++.|++....+.+++|.+.+++..|.++++.+...+.....+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3455555666666666777777777777777777777777777766654444444454443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.67 E-value=10 Score=39.93 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=35.5
Q ss_pred HHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHH
Q 011652 171 GLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
.++..+...+..+.+.++..-.. .++.....+..++...|++++|.+.|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~----~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN----SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc----CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45666677777777766554433 24555566777888888888888888764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.71 Score=41.87 Aligned_cols=55 Identities=9% Similarity=-0.015 Sum_probs=25.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011652 380 MIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 380 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (480)
++..+...|++++|...+..+..... -+...|..++.++.+.|+..+|++.|+++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444555555544444443321 24444555555555555555555544443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.94 E-value=2.9 Score=31.06 Aligned_cols=73 Identities=10% Similarity=0.018 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 371 EADADTYTMMIKMFCQGGEL---EKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
.++..+--.+..++++..+. .++..+++.+...+..-.-...-.+.-++.+.|++++|.++.+.+++. .|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 57777777777778776654 467777777776442213344445666788888888888888888874 45443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.54 Score=46.31 Aligned_cols=126 Identities=10% Similarity=0.059 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCHHHH-HHHHHHHHHhC-CHHHHHHHHHHHHhc------CCCC-CH----
Q 011652 101 HSMIESLAKIRQ-YQIMWDLVNAMRTKRMLNVETF-CIIMRKYARVQ-KVEEAVYTFNVMQKY------GVTQ-NL---- 166 (480)
Q Consensus 101 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~-~~li~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~---- 166 (480)
..++..+...++ ++.|.++|+++....+.....+ ..++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344444555555 4778888888877765222222 23333332222 222344444433321 1111 11
Q ss_pred ------HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHH
Q 011652 167 ------AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREM 226 (480)
Q Consensus 167 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (480)
...+.-...+...|+++-|+++-++...-.|.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222344556788888888888877766667788888888888888888888887776
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.58 E-value=8.3 Score=35.55 Aligned_cols=253 Identities=10% Similarity=0.084 Sum_probs=139.3
Q ss_pred CChhHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH----hhccC
Q 011652 214 PNLPRAREIFREMVDT-----GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT----YGVEN 284 (480)
Q Consensus 214 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g 284 (480)
|+++.|++.+..+.+. ....+......++..|...|+++...+.+..+.+..... ......++.. .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 7788888877666542 123345556778888999999998888777665432122 2222333332 22233
Q ss_pred CHHHHH--HHHHHHH---HCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHH
Q 011652 285 RIEDAV--DTFLEME---KNGILAD---VAMYNALIGAFCKANKFKNVYRVLKDMNSK--GVAPN---SRTCNIILNGLI 351 (480)
Q Consensus 285 ~~~~a~--~~~~~~~---~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~ 351 (480)
..+... .+.+... +..+... ......|...|...|++.+|..++..+... |.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222211 1111111 1112221 233456677888899999999999888643 22211 235566677888
Q ss_pred hCCChHHHHHHHHHHHh---cCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH----HHHHH
Q 011652 352 GRGETDEAYRVFRRMIK---LCEADA----DTYTMMIKMFCQGGELEKAFKVWKYMKLK-RFIPSMHTFSV----LINGL 419 (480)
Q Consensus 352 ~~~~~~~a~~~~~~~~~---~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~----l~~~~ 419 (480)
..+++..|..+++++.. ...+++ ..+...+..+...+++.+|.+.|.++.+. ...-+...+.. ++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 88999999988888754 233332 34566777777888888888887776542 11113222222 22222
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHH
Q 011652 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEG--REDVLKFLQ 467 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~ 467 (480)
.-.+...+-..++........-++...+..++++|.... +++.+.+.+
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~ 318 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTY 318 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHT
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHH
Confidence 233333334444444443333344556667777776532 344444433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.55 E-value=3.1 Score=43.85 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=91.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC-------------------
Q 011652 311 LIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCE------------------- 371 (480)
Q Consensus 311 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 371 (480)
++..+...+..+.+..+..-.. .++..--.+..++...|++++|.++|.+...+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 4445555666665554433221 1333334455667777888888888876543211
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011652 372 ----ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSM----HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPS 443 (480)
Q Consensus 372 ----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 443 (480)
.-..-|..++..+.+.+.++.+.++-+...+....-+. ..|..++.++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 11234667778888888888888887776653222121 25778888888889999998888777665443
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 011652 444 GETFGKLRKLLIKEGREDVL 463 (480)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~a 463 (480)
...+..++..++..|..+.-
T Consensus 971 ~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHhCCChhhh
Confidence 56677777777777665443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.75 Score=33.57 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHH
Q 011652 149 EAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLE 208 (480)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (480)
+..+-++.+...++.|++.+..+.+.+|.+.+|+..|.++|+-++.+..+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 444555555556666777777777777777777777777777666544444444554443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.35 E-value=2.3 Score=31.08 Aligned_cols=62 Identities=10% Similarity=0.176 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
.-+..+-++.+...++.|++......+++|.+.+++..|.++|+.+.....+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 33455556666666777777777777777777777777777777777654444445555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.99 E-value=18 Score=36.69 Aligned_cols=268 Identities=13% Similarity=0.003 Sum_probs=148.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccCChhhHHHHHHHhhcCCC--------CChhhHHHHHH
Q 011652 139 RKYARVQKVEEAVYTFNVMQKYGVTQNLA--AFNGLLSALCKSKNVRKAQEIFDCMKDRFI--------PDSKTYSILLE 208 (480)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~ 208 (480)
-+....|+.++++.++......+-..+.. .-..+.-+....|...++..++........ +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34567788888888887765421112322 233333445566666667776665443111 11222233333
Q ss_pred HhhcCCC-hhHHHHHHHHHHHcCCCCChhh--HH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH--hh
Q 011652 209 GWGKDPN-LPRAREIFREMVDTGCNPDIVT--YG--IMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT--YG 281 (480)
Q Consensus 209 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 281 (480)
+++..|. -+++.+.+..+.... +... .. .+...+.-.|+.+-...++..+.... +..+...+.-+ +.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 4443443 245666666666531 2211 11 23334556788777788887776532 33333333333 44
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChH
Q 011652 282 VENRIEDAVDTFLEMEKNGILADVA-MYN---ALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETD 357 (480)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 357 (480)
..|+.+.+..+++.+... .+.. -|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred hCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence 678889888888888764 2322 232 23346778899888888999888752 222333333333445567777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 358 EAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL-EKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
.+.++++.+.+...|...--..+.-+....|+. .++..++..+... ++..+-..-+.++
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIAL 671 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHH
Confidence 777777766664445555445555555556554 5778888888642 4554444434333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.85 E-value=11 Score=32.63 Aligned_cols=111 Identities=8% Similarity=0.101 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHH----HHHHHhcCCCCCHHHHHHHHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT----FNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~ 174 (480)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|.++ .+.+.+.+++++......++.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5556667777778888887776542 2334455665555443 455566677777777777776
Q ss_pred HHHccCChh-hHHHHHHHhhc-------CCCCChhhHHHHHHHhhcCCChhHHHHHH
Q 011652 175 ALCKSKNVR-KAQEIFDCMKD-------RFIPDSKTYSILLEGWGKDPNLPRAREIF 223 (480)
Q Consensus 175 ~~~~~~~~~-~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (480)
.+.....-+ .-.++++.+.. ...-++.....+...|.+.+++.+|...|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 665533211 11222222221 11124555566666666666666655544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.54 E-value=12 Score=32.69 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHH----HHHHHhcCCCCCHHHHHHHH
Q 011652 98 RAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYT----FNVMQKYGVTQNLAAFNGLL 173 (480)
Q Consensus 98 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll 173 (480)
.+|.++..-|.+.+++++|++++-.- ...+.+.|+...|.++ ++-+.+.+++++......++
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35666777778888888888876542 2334455665554444 35556667777777766676
Q ss_pred HHHHccC
Q 011652 174 SALCKSK 180 (480)
Q Consensus 174 ~~~~~~~ 180 (480)
..+....
T Consensus 102 ~L~~~~~ 108 (336)
T 3lpz_A 102 GCLRLFQ 108 (336)
T ss_dssp HHHTTSC
T ss_pred HHHHhCC
Confidence 6665544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.79 E-value=5.8 Score=30.40 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=27.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKG-VAPNS-------RTCNIILNGLIGRGETDEAYRVFRRMIK 368 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~-~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 368 (480)
++.+...|.++.|+-+...+.... ..|+. .++..+..++...+++..|...|+++.+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455555555555554433210 11111 1344455556666666666666666543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.61 E-value=5.1 Score=33.57 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=79.3
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCh
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI--PSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~ 425 (480)
....+.|.+++++.....-++..|.|...-..+++.+|-.|++++|.+-++...+.... |...+|..+|.+-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~---- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA---- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH----
Confidence 34667899999999999988888999999999999999999999999999888775421 223345555543211
Q ss_pred HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhh
Q 011652 426 SDSCVLLEDMIEKG-----IRPSGETFGKLRKLLI--KEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 426 ~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~l~ 474 (480)
=.++..-+ +.....-...++.+.. ..|+.++|.++-.++.+..
T Consensus 81 ------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 81 ------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp ------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 11111111 1122333445555554 4699999999998887764
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.33 E-value=25 Score=33.97 Aligned_cols=116 Identities=11% Similarity=0.058 Sum_probs=72.7
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHH----HHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 319 NKFKNVYRVLKDMNSKGVAPNSRTCNII----LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAF 394 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 394 (480)
.+.+.|...+........ .+......+ .......+...++...+..... ...+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 377889999988865432 233332222 2233334435566666666443 3344444555555666789999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 395 KVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
..|+.|...... .....--+..++...|+.++|..+|+++..
T Consensus 306 ~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999888653211 333344456677888999999999998864
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.78 E-value=24 Score=32.46 Aligned_cols=254 Identities=8% Similarity=0.067 Sum_probs=148.6
Q ss_pred cCChhhHHHHHHHhhc------CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH-cCCCCChhhHHHHHHH----HHh
Q 011652 179 SKNVRKAQEIFDCMKD------RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD-TGCNPDIVTYGIMVDV----LCK 247 (480)
Q Consensus 179 ~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~----~~~ 247 (480)
.|+++.|.+.+-.+.+ ...........++..+...++++...+.+.-+.+ +|..+.. ...+++. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 3678888887766653 2334556678889999999999999888876653 3333222 2233332 222
Q ss_pred cCCHHH--HHHHHHHhhh--CC-CCc---cHHHHHHHHHHhhccCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHH
Q 011652 248 AGRVDE--ALGIVKSMDS--TV-CRP---TSFIYSVLVHTYGVENRIEDAVDTFLEMEK--NGILAD---VAMYNALIGA 314 (480)
Q Consensus 248 ~g~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~---~~~~~~li~~ 314 (480)
....+. -..+.+.+.. .| +.. .......|...+...|++.+|.+++..+.. .|.... ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 333222 2222222211 11 111 223346688899999999999999999863 232222 3466777888
Q ss_pred HHHcCCHhHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHh--cCCCCHHHHH----HHHH
Q 011652 315 FCKANKFKNVYRVLKDMNS----KGVAPN--SRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYT----MMIK 382 (480)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~----~l~~ 382 (480)
|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|-+.|.++.. ....+...+. .++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~ 266 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVY 266 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 9999999999999998743 222222 23456667777888999999988888765 2223333222 2222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHH
Q 011652 383 MFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK--GIVSDSCVLLED 434 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 434 (480)
+..-.+....-..++.........++...|..++.+|... .++..+.+.|+.
T Consensus 267 ~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 267 FLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 2222222222233333332222224677888888888654 345555555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.92 E-value=8 Score=32.42 Aligned_cols=56 Identities=11% Similarity=-0.070 Sum_probs=42.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 011652 105 ESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKY 160 (480)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 160 (480)
..+.+.|+++++++....-.+..|.|...-..++..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34566777888888887777777777777777888888888888888777777664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.85 E-value=11 Score=27.68 Aligned_cols=27 Identities=11% Similarity=-0.094 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
.+-.|.-++.+.|++++|.+..+.+.+
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333444444444555555554444444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.84 E-value=24 Score=31.73 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=44.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCccHHHHH---
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPD-----IVTYGIMVDVLCKAGRVDEALGIVKSMDSTV--CRPTSFIYS--- 274 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~--- 274 (480)
.++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+....... +.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 355566666666666666666553211111 1223344455666667666666665553311 112222111
Q ss_pred -HHHHHhh-ccCCHHHHHHHHHHH
Q 011652 275 -VLVHTYG-VENRIEDAVDTFLEM 296 (480)
Q Consensus 275 -~l~~~~~-~~g~~~~a~~~~~~~ 296 (480)
.-...+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1122334 566677666665554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.93 E-value=23 Score=30.87 Aligned_cols=81 Identities=10% Similarity=0.109 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 303 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
-++.....+...|.+.+++.+|...|- .|..+....+..++..+...+...++--++-+ .+-
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR--------------aVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYCAR--------------AVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH--------------HHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHHHH--------------HHH
Confidence 356666677778888888888877762 23333335665555555444433222222211 223
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011652 383 MFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~ 401 (480)
.|...+++..|..+++...
T Consensus 196 ~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3445667777777665544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.52 E-value=14 Score=27.44 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=40.8
Q ss_pred CCChhhHHHHHHHHHhCCCh---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 337 APNSRTCNIILNGLIGRGET---DEAYRVFRRMIKLCE-ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
.|+..+--.+..++++..+. .+++.+++.+.+..+ ......-.|.-++.+.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45555555555556665543 356666666665333 233455556667777777777777777777654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.37 E-value=16 Score=27.98 Aligned_cols=67 Identities=7% Similarity=0.081 Sum_probs=46.1
Q ss_pred CCCCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHh--cCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 335 GVAPNS--RTCNIILNGLIGRGETDEAYRVFRRMIK--LCEAD-------ADTYTMMIKMFCQGGELEKAFKVWKYMK 401 (480)
Q Consensus 335 ~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 401 (480)
|..|.. ..+-.-++.+...+.++.|+-+.+.+.. ...++ ..++..+.+++...|++..|...|++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444433 3444456677888999999988887665 33343 2366778899999999999999999865
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.35 E-value=14 Score=33.92 Aligned_cols=96 Identities=9% Similarity=-0.098 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHh--cCCCCHHHHHH---
Q 011652 307 MYNALIGAFCKANKFKNVYRVLKDMNSKGVAP--NSRTCNIILNGLIGRGETDEAYRVFRRMIK--LCEADADTYTM--- 379 (480)
Q Consensus 307 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~--- 379 (480)
+...+...|.+.|+++.|.+.+.++......+ -...+...++.+...+++..+...+.++.. ...++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45667777888888888888888877642222 234566677777777888888888777765 22233332222
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHh
Q 011652 380 -MIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 380 -l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
-...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 12222345677777766665543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.05 E-value=18 Score=33.16 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhc
Q 011652 133 TFCIIMRKYARVQKVEEAVYTFNVMQKY--GVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKD 194 (480)
Q Consensus 133 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 194 (480)
++..+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455666666666666666666666543 2222234555566666666666666666666543
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.69 E-value=19 Score=28.66 Aligned_cols=54 Identities=9% Similarity=-0.040 Sum_probs=33.2
Q ss_pred CChhHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 011652 111 RQYQIMWDLVNAMRTKRM--LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQ 164 (480)
Q Consensus 111 ~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 164 (480)
+....+.++|..|...++ .-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666666555 455556666666666666666666666666655555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 480 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 5e-05
Identities = 45/308 (14%), Positives = 109/308 (35%), Gaps = 13/308 (4%)
Query: 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTF 154
AY ++ + Q Q + + ++ + + +E AV +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 155 NVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP 214
+Y + + +A+ + + + +S L +
Sbjct: 125 VSALQYNPDLYCVRSDLGNLL-KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 215 NLPRAREIFREMVDTGCNPDIV-TYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIY 273
+ A F + V +P+ + Y + +VL +A D A+ S + + ++
Sbjct: 184 EIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVH 240
Query: 274 SVLVHTYGVENRIEDAVDTF---LEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKD 330
L Y + I+ A+DT+ +E++ + Y L A +
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH----FPDAYCNLANALKEKGSVAEAEDCYNT 296
Query: 331 MNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGEL 390
+ ++ + N + N +G +EA R++R+ +++ A ++ + + Q G+L
Sbjct: 297 A-LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
Query: 391 EKAFKVWK 398
++A +K
Sbjct: 356 QEALMHYK 363
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 480 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.35 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.31 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.3 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.3 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.23 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.78 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.64 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.61 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.6 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.53 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.47 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.27 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.2 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.19 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.97 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.96 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.92 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.89 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.86 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.77 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.68 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.67 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.55 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.41 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.21 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.14 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.93 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.64 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.13 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.9 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.41 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.07 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.54 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.24 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.74 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.69 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.9e-22 Score=184.99 Aligned_cols=371 Identities=12% Similarity=0.081 Sum_probs=309.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011652 79 LAFCFFKWAEKQQNYEHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQ 158 (480)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 158 (480)
.|.+.|+.+.+..+ .++.++..+...+.+.|++++|...|+++.+.+|.+..+|..+...+...|++++|+..+....
T Consensus 17 ~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~ 94 (388)
T d1w3ba_ 17 AAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94 (388)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccc
Confidence 89999988876643 5788899999999999999999999999998888888999999999999999999999999988
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhH
Q 011652 159 KYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTY 238 (480)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (480)
+.. +.+..............+....+............................+....+...+........ -+...+
T Consensus 95 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 172 (388)
T d1w3ba_ 95 RLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAW 172 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCc-chhHHH
Confidence 865 455566666666666667777777666666655556667777777788888888999888888876532 256777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011652 239 GIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKA 318 (480)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 318 (480)
..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++....+. .+...+..+...+.+.
T Consensus 173 ~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 250 (388)
T d1w3ba_ 173 SNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQ 250 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHC
Confidence 888889999999999999999988764 45677888899999999999999999999887643 3677788888999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011652 319 NKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWK 398 (480)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 398 (480)
|++++|...+++..+.... +...+..+...+...|+.++|.+.++......+.+...+..+...+...|++++|.+.++
T Consensus 251 ~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 329 (388)
T d1w3ba_ 251 GLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp TCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999886433 567888889999999999999999999998888999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 011652 399 YMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP-SGETFGKLRKLLIKEGR 459 (480)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 459 (480)
+..+... -+..++..+..+|.+.|++++|...|+++++. .| +...+..+..++.+.|+
T Consensus 330 ~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 330 KALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 9987653 26778899999999999999999999999875 44 46778888888888775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-22 Score=186.29 Aligned_cols=367 Identities=12% Similarity=0.058 Sum_probs=312.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
+...+.+.|++++|.+.++++.+..|.++.++..+...+...|++++|+..|+.+.+.. |.+..++..+..+|...|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 45567789999999999999999888889999999999999999999999999998875 56788999999999999999
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
++|...+.......+.+...+..........+....+............. ...............+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhh
Confidence 99999999998866677777777777777777777777777766654333 44455556667777888888888888877
Q ss_pred hCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhh
Q 011652 263 STVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRT 342 (480)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 342 (480)
... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+.+....+.. +...
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 239 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHH
Confidence 654 4567788888999999999999999999987753 236778888999999999999999999998886433 5667
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011652 343 CNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDK 422 (480)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (480)
+..+...+.+.|++++|...++++.+..+.+..++..+...+...|++++|.+.++...... +.+...+..+...+...
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHC
Confidence 88888999999999999999999999888889999999999999999999999999988764 34778899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 423 GIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 423 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
|++++|+..|+++++.. +-+..++..+..++.+.|++++|.+.+++..++++.
T Consensus 319 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 371 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999998753 235677888999999999999999999999888654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=4.2e-14 Score=125.48 Aligned_cols=270 Identities=11% Similarity=0.019 Sum_probs=174.9
Q ss_pred HHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011652 172 LLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRV 251 (480)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 251 (480)
....+.+.|++++|...|+++.+..|.+..+|..+..++...|++++|...|.+..+.... +...+..+...|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccc
Confidence 3445667777777777777777666666777777777777777777777777777664322 455666666777777777
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 011652 252 DEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDM 331 (480)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 331 (480)
++|.+.++...... |+............ ...+.......+..+...+.+.++...+.+.
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 77777777766542 22111000000000 0000111111222334455667777777777
Q ss_pred HhCCC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 011652 332 NSKGV-APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMH 410 (480)
Q Consensus 332 ~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 410 (480)
.+... .++...+..+...+...|++++|...++......+.+..+|..+..+|...|++++|.+.++++.+.... +..
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 241 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIR 241 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHH
Confidence 65432 2345567777788888899999999999888877778888888999999999999999999988875422 577
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 011652 411 TFSVLINGLCDKGIVSDSCVLLEDMIEKG----------IRPSGETFGKLRKLLIKEGREDVLK 464 (480)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~p~~~~~~~l~~~~~~~g~~~~a~ 464 (480)
+|..+..+|.+.|++++|+..|++.++.. .......|..+-.++...|+.+.+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888889999999999999998887521 1112234555666666666655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.9e-14 Score=124.04 Aligned_cols=247 Identities=12% Similarity=0.016 Sum_probs=156.9
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccC
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVEN 284 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (480)
.....+.+.|++++|...|++.++..+. +..+|..+..++...|++++|...+.+..+.. +.+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3444455556666666666665554221 34455555555555566666665555555442 233444555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 011652 285 RIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFR 364 (480)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 364 (480)
++++|.+.+++..... |+............ ...+.......+..+...+...+|...+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 5555555555554431 11100000000000 00000011111223344566778888888
Q ss_pred HHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011652 365 RMIK--LCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 365 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 442 (480)
.+.+ ....+..++..+...+...|++++|...+++....... +...|..+...|...|++++|.+.|+++++.. +-
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 8776 33457788999999999999999999999998876533 67889999999999999999999999999764 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 443 SGETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+...+..+..+|.+.|++++|.+.+++..++.+.
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 272 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 272 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 5777889999999999999999999999887654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.8e-10 Score=99.43 Aligned_cols=216 Identities=6% Similarity=-0.004 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQ-KVEEAVYTFNVMQKYGVTQNLAAFNGLLSA 175 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (480)
..+++.+...+.+.+.+++|+++++.+.+.+|.+..+|+....++...| ++++|+..++...+.. +-+..+|..+..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 3456666667777888888888888888888888888888888877766 4788888888887765 5567788888888
Q ss_pred HHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----
Q 011652 176 LCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGR----- 250 (480)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 250 (480)
+.+.|++++|+..++++.+..+.+..+|..+...+.+.|++++|++.++++++.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 888888888888888888766777888888888888888888888888888876433 56667666555555444
Q ss_pred -HHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 011652 251 -VDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGIL-ADVAMYNALIGAFC 316 (480)
Q Consensus 251 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~ 316 (480)
+++|++.+....+.. +.+...|..+...+...| .+++.+.++...+.... .+...+..++..|.
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 567777777776654 445666666655554433 45666666665543222 23445555555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=1e-09 Score=97.74 Aligned_cols=300 Identities=13% Similarity=0.007 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChhhHHHHHHHhhc---CCCC---ChhhH
Q 011652 134 FCIIMRKYARVQKVEEAVYTFNVMQKYGVTQN----LAAFNGLLSALCKSKNVRKAQEIFDCMKD---RFIP---DSKTY 203 (480)
Q Consensus 134 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~---~~~~~ 203 (480)
.......+...|++++|++++++..+.....+ ..++..+..++...|++++|...+++... .... ....+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33344555666777777777776665421111 23445555666666666666666666543 1000 11223
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHc----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 011652 204 SILLEGWGKDPNLPRAREIFREMVDT----GCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279 (480)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (480)
..+...+...|++..+...+.+.... +.... ......+..+...
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~~~la~~ 142 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL--------------------------------PMHEFLVRIRAQL 142 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS--------------------------------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchh--------------------------------hHHHHHHHHHHHH
Confidence 34444455555555555555544321 00000 0011122333344
Q ss_pred hhccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC--ChhhHHHHHHH
Q 011652 280 YGVENRIEDAVDTFLEMEKNG----ILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK----GVAP--NSRTCNIILNG 349 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p--~~~~~~~l~~~ 349 (480)
+...|+++.+...+....... .......+......+...++...+...+.+.... +..+ ....+......
T Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T d1hz4a_ 143 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 222 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 444444444444444433211 1111223333334444455555555444433221 1000 01123333444
Q ss_pred HHhCCChHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLC----EADADTYTMMIKMFCQGGELEKAFKVWKYMKL----KRFIPS-MHTFSVLINGLC 420 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~ 420 (480)
+...|+++.|...++...... ......+..+..++...|++++|...++++.. .+..|+ ...+..+...|.
T Consensus 223 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 302 (366)
T d1hz4a_ 223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 302 (366)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 555566666666655554411 11233444555666666666666666665542 122222 234555666666
Q ss_pred hcCChHHHHHHHHHHHHc----CCC----CCHHHHHHHHHHHHhcCCHHHHHH
Q 011652 421 DKGIVSDSCVLLEDMIEK----GIR----PSGETFGKLRKLLIKEGREDVLKF 465 (480)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~----~~~----p~~~~~~~l~~~~~~~g~~~~a~~ 465 (480)
..|++++|.+.+++.++. |.. .....+..++..+...++.+++.+
T Consensus 303 ~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 303 QAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 667777777666665432 211 112334445555666666555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=1.3e-09 Score=95.03 Aligned_cols=187 Identities=11% Similarity=0.057 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011652 250 RVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLK 329 (480)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 329 (480)
..++|..++++..+...+.+...|...+......|+++.|..+|+++.+.........|...+..+.+.|+.+.|..+|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677778887776544555666777777778888888888888887765433335567777778888888888888888
Q ss_pred HHHhCCCCCChhhHHHHHHH-HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC
Q 011652 330 DMNSKGVAPNSRTCNIILNG-LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR-FIP 407 (480)
Q Consensus 330 ~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p 407 (480)
++.+.+.. +...|...... +...|+.+.|..+|+.+.+..+.+...|...+..+...|+++.|..+|++..... ..|
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 88776433 33333333322 3445788888888888888777778888888888888888888888888877653 222
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 408 --SMHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 408 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
....|...+..-...|+.+.+..+++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245677777776777888888888887765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=5.8e-10 Score=97.36 Aligned_cols=197 Identities=9% Similarity=0.074 Sum_probs=118.7
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 011652 201 KTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG-RVDEALGIVKSMDSTVCRPTSFIYSVLVHT 279 (480)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (480)
..|+.+...+.+.+.+++|+++++++++.++. +...|+....++...| ++++|+..++...... +-+..+|..+..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 44556666666677777777777777765322 4455666666666654 4677777777766654 4456666666666
Q ss_pred hhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC----
Q 011652 280 YGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE---- 355 (480)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---- 355 (480)
+...|++++|+..++++.+... .+...|..+...+...|++++|...++++.+.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 7777777777777777665432 25666666666677777777777777776665332 44455555444444433
Q ss_pred --hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 356 --TDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 356 --~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
+++|.+.+..+.+..|.+...|..+...+.. ...+++.+.++...+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 4566666666666556666666655544433 334555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=1.3e-09 Score=94.94 Aligned_cols=191 Identities=12% Similarity=0.085 Sum_probs=157.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011652 284 NRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVF 363 (480)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (480)
+..++|..+|++..+...+.+...+...+..+.+.|+.+.|..+++++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578899999988765555777888888889999999999999999998644433457889999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CC
Q 011652 364 RRMIKLCEADADTYTMMIKMF-CQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG-IR 441 (480)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 441 (480)
+++.+..+.+...|...+... ...|+.+.|.++|+.+.... +.+...|..++..+...|+.+.|..+|++.+... ..
T Consensus 158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 999987777777776666543 44689999999999998863 3478899999999999999999999999998753 33
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Q 011652 442 PS--GETFGKLRKLLIKEGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 442 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~ 475 (480)
|+ ...|...+..-...|+.+.+..+.+++.++-+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 33 45788888888889999999999999877654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.6e-09 Score=96.51 Aligned_cols=270 Identities=10% Similarity=0.047 Sum_probs=184.0
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC----C-CccHHHHHH
Q 011652 205 ILLEGWGKDPNLPRAREIFREMVDTGCNPD----IVTYGIMVDVLCKAGRVDEALGIVKSMDSTV----C-RPTSFIYSV 275 (480)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~~~ 275 (480)
.....+...|++++|++++++..+.....+ ...+..+..++...|++++|...+++..... . ......+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344555667777777777777665421111 1345556667777788888887777765421 0 111234555
Q ss_pred HHHHhhccCCHHHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC----CCChhhHH
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEK----NGILAD---VAMYNALIGAFCKANKFKNVYRVLKDMNSKGV----APNSRTCN 344 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~ 344 (480)
+...+...|++..+...+..... .+.... ...+..+...+...|+++.+...+........ ......+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 66777788888888887776543 211111 23455667788899999999999988876422 22233455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh---cCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHH
Q 011652 345 IILNGLIGRGETDEAYRVFRRMIK---LCEA----DADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIP---SMHTFSV 414 (480)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~ 414 (480)
.....+...++...+...+..... .... ....+..+...+...|++++|...++......... ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 566677888999999998887766 1112 12346667778889999999999999877543222 2455667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 011652 415 LINGLCDKGIVSDSCVLLEDMIE----KGIRPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLV 474 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~ 474 (480)
+..++...|++++|...++++.. .+..|+ ...+..+..++.+.|++++|.+.+++..++.
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 88899999999999999998863 244343 3457778899999999999999999887764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=5.9e-11 Score=105.22 Aligned_cols=217 Identities=8% Similarity=-0.075 Sum_probs=120.3
Q ss_pred CChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCC--ChhHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCCHHHHHH
Q 011652 180 KNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDP--NLPRAREIFREMVDTGCNPDIVTYG-IMVDVLCKAGRVDEALG 256 (480)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~ 256 (480)
|++++|+..++......+.+...|..+..++...+ ++++|...+.+..+.... +...+. .....+...+.+++|+.
T Consensus 87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHH
Confidence 34556666666666655556666666655555444 356777777776654322 333332 33355556677777777
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 011652 257 IVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGV 336 (480)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 336 (480)
.++.+.... +-+...|..+..++...|++++|...+....+. ... .......+...+..+++...+........
T Consensus 166 ~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~~ 239 (334)
T d1dcea1 166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV----LLK-ELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (334)
T ss_dssp HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH----HHH-HHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh----HHH-HHHHHHHHHHhcchhHHHHHHHHHHHhCc
Confidence 777766654 445666666666676666666654444332221 000 11122233445555556666655555422
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011652 337 APNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKR 404 (480)
Q Consensus 337 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 404 (480)
++...+..+...+...++..+|...+....+..+.+..++..+..++...|++++|.+.++++.+.+
T Consensus 240 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 240 -EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp -CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred -chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 2333444455555555666666666666555444455566666666666666666666666666543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=1.2e-10 Score=103.13 Aligned_cols=264 Identities=5% Similarity=-0.059 Sum_probs=145.9
Q ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHHH----------HHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC-
Q 011652 113 YQIMWDLVNAMRTKRMLNVETFCIIMRKY----------ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKN- 181 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~- 181 (480)
.++|.++++.+.+.+|.+...|+..-..+ ...|.+++|+.+++...+.. +.+...|..+..++...++
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~ 123 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccc
Confidence 35566666665555554444443322222 22233556666666665543 4455555555555544443
Q ss_pred -hhhHHHHHHHhhcCCCCChhhHHH-HHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011652 182 -VRKAQEIFDCMKDRFIPDSKTYSI-LLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVK 259 (480)
Q Consensus 182 -~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (480)
+++|...++.+....+++...+.. ....+...+.+++|+..++++.+..+. +...|+.+..++...|++++|...+.
T Consensus 124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~ 202 (334)
T d1dcea1 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (334)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 566666666665544555555433 334555566666666666666655432 45566666666666666665544443
Q ss_pred HhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 011652 260 SMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPN 339 (480)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 339 (480)
..... .|. .......+...+..+++...+........ ++...+..+...+...|+.++|...+.+.....+. +
T Consensus 203 ~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~ 275 (334)
T d1dcea1 203 LPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPENKW-C 275 (334)
T ss_dssp SCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-H
T ss_pred HhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-H
Confidence 33322 111 11122333444555666666666554432 23334445555666677777777777777665322 3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
...+..+..++...|+.++|.+.++.+.+..|.+...|..+...+.
T Consensus 276 ~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 276 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 4566667777777788888888888777755555566666655544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.1e-09 Score=93.03 Aligned_cols=131 Identities=10% Similarity=-0.097 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011652 97 VRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSAL 176 (480)
Q Consensus 97 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (480)
..+|..+...|.+.|++++|.+.|++.....|.++.+|..+..++...|++++|+..|+++.+.. |.+..++..+..++
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 34666667777888888888888888887777777888888888888888888888888887764 44566777777777
Q ss_pred HccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011652 177 CKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVD 228 (480)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (480)
...|++++|...|+...+..+.+......+..++.+.+..+.+..+......
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 7888888888888777665455555444444444444544444444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.6e-09 Score=91.84 Aligned_cols=216 Identities=11% Similarity=-0.046 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 011652 113 YQIMWDLVNAMRTKRML----NVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEI 188 (480)
Q Consensus 113 ~~~a~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 188 (480)
.+.++.-+++....... ...+|..+...|.+.|++++|++.|++..+.. |.++.+|..+..++.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 34455555555544331 23467777888899999999999999988875 56788888999999999999999999
Q ss_pred HHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 011652 189 FDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRP 268 (480)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (480)
|++.....+.+..++..+..++...|++++|.+.|++..+.... +......+..++.+.+..+.+..+........ +
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 170 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--K 170 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--C
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--h
Confidence 99988866677888888999999999999999999988875422 33333334444555555555555555544432 1
Q ss_pred cHHHHHHHHHHhhccCC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 011652 269 TSFIYSVLVHTYGVENR----IEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSK 334 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 334 (480)
....+. ++..+..... .+.+...+....... +....+|..+...|...|++++|...|+.....
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 111222 2222221111 111211111111100 001234555667777777777777777777765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=3.2e-07 Score=78.63 Aligned_cols=118 Identities=9% Similarity=0.066 Sum_probs=56.7
Q ss_pred cCCHhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHH
Q 011652 318 ANKFKNVYRVLKDMNSK----GVAP-NSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADA-------DTYTMMIKMFC 385 (480)
Q Consensus 318 ~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 385 (480)
.|++++|...+.+..+. +..+ -..++..+...+...|++++|...++++....+.+. ..+...+..+.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHH
Confidence 35555555555554321 1111 122345555566666666666666666555211111 12333444555
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh--cCChHHHHHHHHHH
Q 011652 386 QGGELEKAFKVWKYMKLKRFI-PS---MHTFSVLINGLCD--KGIVSDSCVLLEDM 435 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 435 (480)
..|+++.|.+.+++..+.... ++ ......++.++.. .+.+++|+..|+++
T Consensus 211 ~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 667777777777766654311 11 2233445555443 23466666666544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.8e-07 Score=66.67 Aligned_cols=104 Identities=8% Similarity=-0.094 Sum_probs=73.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
-...+.+.|++++|+..|++.....|.+...|..+..++...|++++|+..++...+.+ +.+...|..+..++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 45566677777777777777777777777777777777777777777777777777665 55667777777777777777
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHH
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
++|+..|+...+..|.+...+..+-
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~ 112 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQ 112 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7777777777765555555444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=7.3e-07 Score=70.87 Aligned_cols=126 Identities=16% Similarity=0.041 Sum_probs=89.1
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 011652 313 GAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEK 392 (480)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 392 (480)
..+...|+++.|.+.|.++. +|+..+|..+..++...|++++|++.|++..+..+.++..|..+..+|.+.|++++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 34566777888877776542 35666777777777888888888888888777667777788888888888888888
Q ss_pred HHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011652 393 AFKVWKYMKLKRFI--------------P-SMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRP 442 (480)
Q Consensus 393 a~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 442 (480)
|.+.|++....... + ...++..+..++.+.|++++|.+.++.+......+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 88877776543110 0 12456667777888888888888888877654443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=6.5e-07 Score=71.18 Aligned_cols=122 Identities=11% Similarity=-0.011 Sum_probs=81.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChh
Q 011652 104 IESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVR 183 (480)
Q Consensus 104 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (480)
...+...|+++.|++.|+.+ ..+++.+|..+...+...|++++|++.|++.++.+ +.....|..+..++.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 44556777888888777653 23567777778888888888888888888877765 556777777777788888888
Q ss_pred hHHHHHHHhhcCCCCC----------------hhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 184 KAQEIFDCMKDRFIPD----------------SKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
+|...|++.....+.+ ..++..+..++.+.|++++|.+.+....+.
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8887777765421211 123344555566666666666666655543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=1.2e-06 Score=75.04 Aligned_cols=166 Identities=10% Similarity=0.010 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CC-CCCHH
Q 011652 99 AYHSMIESLAKIRQYQIMWDLVNAMRTKRM------LNVETFCIIMRKYARVQKVEEAVYTFNVMQKY----GV-TQNLA 167 (480)
Q Consensus 99 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 167 (480)
.|......|...|++++|.+.|.+...... ....+|..+...|.+.|++++|++.++...+. |. .....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 345556667777777777777777654211 22345666677777777777777777655432 10 00123
Q ss_pred HHHHHHHHHH-ccCChhhHHHHHHHhhc-----CCCC-ChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChh----
Q 011652 168 AFNGLLSALC-KSKNVRKAQEIFDCMKD-----RFIP-DSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIV---- 236 (480)
Q Consensus 168 ~~~~ll~~~~-~~~~~~~a~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 236 (480)
++..+...|. ..|++++|.+.+++..+ +.++ ...++..+...+...|++++|...|++...........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 3444444443 34666666666665543 1000 12335555566666666666666666655432111111
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011652 237 --TYGIMVDVLCKAGRVDEALGIVKSMDST 264 (480)
Q Consensus 237 --~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (480)
.+...+..+...|+++.|...+++..+.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1122333444555666666655555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=9.5e-07 Score=63.75 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=70.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011652 347 LNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVS 426 (480)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 426 (480)
...+...|++++|+..|+++.+..|.++..|..+..+|...|++++|...+....+.+. .+...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCHH
Confidence 45567778888888888888777777788888888888888888888888888777653 36777778888888888888
Q ss_pred HHHHHHHHHHHc
Q 011652 427 DSCVLLEDMIEK 438 (480)
Q Consensus 427 ~A~~~~~~~~~~ 438 (480)
+|+..|++.++.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888888888764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=5.2e-07 Score=69.45 Aligned_cols=101 Identities=9% Similarity=-0.015 Sum_probs=60.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
....+.+.|++++|+..|++..+.++.+...|..+...+...|++++|+..|+..++.. +.+..+|..+..++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 34455566666666666666666666666666666666666666666666666666554 44555666666666666666
Q ss_pred hhHHHHHHHhhcCCCCChhhHH
Q 011652 183 RKAQEIFDCMKDRFIPDSKTYS 204 (480)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~ 204 (480)
++|...+++.....+.+...+.
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~ 116 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKM 116 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHH
Confidence 6666666666553333444333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=2e-06 Score=66.07 Aligned_cols=118 Identities=9% Similarity=-0.018 Sum_probs=82.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011652 346 ILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIV 425 (480)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 425 (480)
....|.+.|++++|+..|+++.+..|.+...|..+..+|...|++++|...|+++.+.+.. +...|..+..++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 3455677888888888888888877778888888888888888888888888888776533 667888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHH
Q 011652 426 SDSCVLLEDMIEKGIRPSGETFGKLRKL--LIKEGREDVLKF 465 (480)
Q Consensus 426 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~ 465 (480)
++|...+++..... +-+...+..+..+ ....+.++++..
T Consensus 95 ~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 95 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888887754 2234444333333 223334455544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.57 E-value=0.00012 Score=61.09 Aligned_cols=224 Identities=11% Similarity=0.026 Sum_probs=116.4
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCccHHHHHH
Q 011652 200 SKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCK----AGRVDEALGIVKSMDSTVCRPTSFIYSV 275 (480)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 275 (480)
+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3344445555555566666666666655543 33444444444443 345566666666555543 1122222
Q ss_pred HHHHhh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 011652 276 LVHTYG----VENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIIL 347 (480)
Q Consensus 276 l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 347 (480)
+...+. ..++.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 222221 23455666666666655432 2222222222222 23344555555554443 2344455555
Q ss_pred HHHHh----CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 348 NGLIG----RGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 348 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
..+.. ..+...+..+++...+ ..+......+...|.. ..++++|...|++..+.| ++..+..|...|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 55543 3445555566655554 2345555555555554 457778888888777766 455666666666
Q ss_pred Hh----cCChHHHHHHHHHHHHcCC
Q 011652 420 CD----KGIVSDSCVLLEDMIEKGI 440 (480)
Q Consensus 420 ~~----~g~~~~A~~~~~~~~~~~~ 440 (480)
.+ ..+.++|.++|++..+.|.
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCCccCHHHHHHHHHHHHHCcC
Confidence 54 3367778888877777663
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=9.9e-07 Score=70.83 Aligned_cols=100 Identities=6% Similarity=-0.052 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 303 ADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 303 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
|+...+......|.+.|++++|...|.+..+..+. +...|..+..+|.+.|++++|+..|+.+.+..|-+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 66777777888888999999999999888876433 67778888888999999999999999988877778888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 011652 383 MFCQGGELEKAFKVWKYMKLK 403 (480)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~ 403 (480)
+|...|++++|...|+++.+.
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999998887653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=2e-07 Score=75.15 Aligned_cols=98 Identities=14% Similarity=-0.000 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
|+...+-.....+.+.|++++|+..|++.....|.++.+|..+..+|.+.|++++|+..|+...+.. |-+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4455555555566666666666666666655555556666666666666666666666666655543 334555555556
Q ss_pred HHHccCChhhHHHHHHHhh
Q 011652 175 ALCKSKNVRKAQEIFDCMK 193 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~ 193 (480)
+|...|++++|...|++..
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 6666666666666555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.50 E-value=0.00013 Score=60.96 Aligned_cols=224 Identities=11% Similarity=-0.041 Sum_probs=160.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011652 235 IVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGV----ENRIEDAVDTFLEMEKNGILADVAMYNA 310 (480)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (480)
+..+..+...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3456666777888999999999999998876 45556666666665 668999999999988765 4444445
Q ss_pred HHHHHHH----cCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH----hCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011652 311 LIGAFCK----ANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLI----GRGETDEAYRVFRRMIKLCEADADTYTMMIK 382 (480)
Q Consensus 311 li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 382 (480)
+...+.. ..+.+.|...++...+.|.. .....+...+. .......+...+..... ..+...+..+..
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~ 150 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGS 150 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhh
Confidence 5444443 45788899999998887543 22222323332 24556667777766554 566777888888
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011652 383 MFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454 (480)
Q Consensus 383 ~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 454 (480)
.|.. ..+...+...++...+.| +......+...|.. ..+.++|..+|++..+.| ++..+..|...|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 8876 467788888888888875 66777777766665 568999999999999876 456666777777
Q ss_pred Hh----cCCHHHHHHHHHHHHhhhC
Q 011652 455 IK----EGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 455 ~~----~g~~~~a~~~~~~~~~l~~ 475 (480)
.+ ..+.+.|.+++++..+++.
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCCccCHHHHHHHHHHHHHCcC
Confidence 65 3378899999998876653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=7.6e-07 Score=64.50 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=82.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 011652 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGE---LEKAFKVWKYMKLKRFIPS-MHTFSVLINGL 419 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 419 (480)
..++..+...+++++|++.|+......+.++.++..+..++.+.++ +++|..+++++...+..|+ ..+|..+..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4567778888899999999999998888899999999999887554 4568999998887654433 24677888899
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011652 420 CDKGIVSDSCVLLEDMIEKGIRPSGETFGKL 450 (480)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 450 (480)
.+.|++++|.+.|+++++. .|+..-...+
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l 111 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--EPQNNQAKEL 111 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 9999999999999999884 4654443333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.42 E-value=1.6e-06 Score=61.99 Aligned_cols=86 Identities=7% Similarity=-0.002 Sum_probs=41.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 011652 348 NGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSD 427 (480)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (480)
..+.+.|++++|...++++....|.++..|..+..++.+.|++++|...+++..+.... +...|..+...|...|++++
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHH
Confidence 33444455555555555554444444455555555555555555555555554443311 34444444445555555555
Q ss_pred HHHHHHH
Q 011652 428 SCVLLED 434 (480)
Q Consensus 428 A~~~~~~ 434 (480)
|.+.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.39 E-value=1.6e-06 Score=61.87 Aligned_cols=89 Identities=15% Similarity=0.040 Sum_probs=67.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011652 103 MIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNV 182 (480)
Q Consensus 103 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (480)
....+.+.|++++|...|++....+|.++.+|..+..++.+.|++++|+..|+...+.. |.+..++..+..+|...|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 45566777888888888888777777777778888888888888888888887777764 55677777777777777888
Q ss_pred hhHHHHHHHh
Q 011652 183 RKAQEIFDCM 192 (480)
Q Consensus 183 ~~a~~~~~~~ 192 (480)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.5e-06 Score=62.87 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 011652 378 TMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGI---VSDSCVLLEDMIEKGIRPSG-ETFGKLRKL 453 (480)
Q Consensus 378 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 453 (480)
..++..+...+++++|.+.|++....+. .+..++..+..++.+.++ +++|+.+++++...+..|+. ..+..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4577888899999999999999998764 388899999999987655 45699999999875543432 367788999
Q ss_pred HHhcCCHHHHHHHHHHHHhhhCC
Q 011652 454 LIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
|.+.|++++|.+.++++.++++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhhHHHHHHHHHHHHhCcC
Confidence 99999999999999999998764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.27 E-value=0.0009 Score=57.03 Aligned_cols=136 Identities=10% Similarity=0.053 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011652 95 HSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLS 174 (480)
Q Consensus 95 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 174 (480)
++..--..+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. .+..+|..+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 4444555566777788888888888876532 567777777888888877766543 25567777777
Q ss_pred HHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011652 175 ALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDIVTYGIMVDVLCKAG 249 (480)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 249 (480)
.+........+.-+ ......++.....++..|-..|.+++...+++..... -.++...++.++..|++.+
T Consensus 78 ~l~~~~e~~la~i~----~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLAQMC----GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHHHHT----TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHHHHH----HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 77766655443211 1122234445566777777777777777777766532 2345556677777777653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=4.5e-05 Score=58.80 Aligned_cols=132 Identities=8% Similarity=-0.084 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011652 306 AMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFC 385 (480)
Q Consensus 306 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (480)
..+......+.+.|++++|...|.+........... ...-......+ ...+|+.+..+|.
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~--------------~~~~~~~~~~~------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SNEEAQKAQAL------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CSHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc--------------chHHHhhhchh------HHHHHHHHHHHHH
Confidence 344455567777888888888887776531110000 00000111111 1235677888899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011652 386 QGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGR 459 (480)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 459 (480)
+.|++++|...++..+..+.. +...|..+..+|...|++++|...|+++.+... -+......+..+..+.+.
T Consensus 74 k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Confidence 999999999999998887633 788888899999999999999999999987542 245555555444444343
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=5.4e-05 Score=58.34 Aligned_cols=127 Identities=7% Similarity=-0.101 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011652 271 FIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGL 350 (480)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 350 (480)
..+......+.+.|++++|+..|.+......... +..+.-......+. ..+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~--------------~~~~~~~~~~~~~~-------~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--------------SFSNEEAQKAQALR-------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--------------CCCSHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--------------ccchHHHhhhchhH-------HHHHHHHHHHH
Confidence 3455566788999999999999998875311100 00001111111111 12566678888
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 351 IGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
.+.|++++|+..++.+....|.++.+|..+..+|...|++++|...|+++.+.++. +......+....
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 89999999999999999877888999999999999999999999999998886522 555554444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=0.0017 Score=55.35 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=31.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011652 415 LINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEK 469 (480)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (480)
++..+.+.++..-...+++...+.| +..+.+++.+.|...++++.-++..+.
T Consensus 254 ~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 254 AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 3444455556666666666655444 345677777788887776655555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=2.3e-05 Score=57.24 Aligned_cols=102 Identities=9% Similarity=0.105 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-----HHHHHHHHH
Q 011652 344 NIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFI-PS-----MHTFSVLIN 417 (480)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~-----~~~~~~l~~ 417 (480)
..+...+...|++++|+..|.++.+..|.+...+..+..+|.+.|++++|...++++++.... +. ..+|..+..
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 345566777788888888888888777777888888888888888888888888877653211 11 235666777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 011652 418 GLCDKGIVSDSCVLLEDMIEKGIRPSGETF 447 (480)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 447 (480)
.+...+++++|+..|++.+.. .++....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 777888888888888887753 3455443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.3e-05 Score=57.25 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 011652 376 TYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGI--RPS----GETFGK 449 (480)
Q Consensus 376 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 449 (480)
.+..+...+.+.|++++|...|.+.++.+.. +...+..+..+|.+.|++++|+..++++++... ... ..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3456778899999999999999999987643 788999999999999999999999999886321 111 246777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 450 LRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 450 l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
+...+...+++++|.+.+++.......
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 888889999999999999988776543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=8.2e-07 Score=82.24 Aligned_cols=115 Identities=10% Similarity=-0.086 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011652 269 TSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILN 348 (480)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 348 (480)
+...+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...+.+..+..+. +...|+.+..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHH
Confidence 34455556666666677777666665544321 1345556666777777777777777777765322 4567777777
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 011652 349 GLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQG 387 (480)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 387 (480)
.+...|+..+|...|.+.....+|.+.++..|...+.+.
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 777777777777777777776677777777777766543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.97 E-value=0.0005 Score=52.57 Aligned_cols=95 Identities=7% Similarity=-0.115 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011652 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLL 454 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 454 (480)
.+|..+..+|.+.|++++|+..++.....+. .+...|..+..++...|++++|...|+++++.. +.+......+..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3566778888889999999999998887653 377888888889999999999999999988754 23444455554444
Q ss_pred HhcCCH-HHHHHHHHHHH
Q 011652 455 IKEGRE-DVLKFLQEKMN 471 (480)
Q Consensus 455 ~~~g~~-~~a~~~~~~~~ 471 (480)
.+.+.. +...+++.+|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 444433 33445555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.96 E-value=0.0002 Score=55.40 Aligned_cols=123 Identities=11% Similarity=-0.000 Sum_probs=84.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 011652 312 IGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELE 391 (480)
Q Consensus 312 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (480)
.......|++++|...|.+..... ++... ......+-+...-..+. +.....+..+..++...|+++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~---~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALV---EDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHH---HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCch
Confidence 346778899999999999988751 11110 00000001111111111 112356778889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHHHH
Q 011652 392 KAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMI-----EKGIRPSGETFG 448 (480)
Q Consensus 392 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~ 448 (480)
+|...++.+...... +...|..++.+|.+.|+..+|++.|+++. +.|+.|+..+-.
T Consensus 85 ~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 85 AVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 999999999887643 88899999999999999999999999875 359999887643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=0.00012 Score=56.28 Aligned_cols=82 Identities=7% Similarity=-0.131 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011652 372 ADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLR 451 (480)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 451 (480)
.....|..+..++.+.|++++|+..++++.+... .+...|..+..++...|++++|+..|+++++.. +.+......+.
T Consensus 75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~ 152 (169)
T d1ihga1 75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3455677888999999999999999999988764 378889999999999999999999999999864 22445555554
Q ss_pred HHHH
Q 011652 452 KLLI 455 (480)
Q Consensus 452 ~~~~ 455 (480)
.+..
T Consensus 153 ~~~~ 156 (169)
T d1ihga1 153 KVKQ 156 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.95 E-value=0.00032 Score=52.71 Aligned_cols=64 Identities=8% Similarity=-0.063 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011652 375 DTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDMIEKG 439 (480)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (480)
.+|..+..+|.+.|++++|.+.++.+.+.+. .+..+|..+..++...|++++|...|++.++..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566677777777777777777777776552 266777777777777777777777777777643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.92 E-value=0.0002 Score=53.86 Aligned_cols=62 Identities=16% Similarity=-0.075 Sum_probs=37.6
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 168 AFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
+|+.+..+|.+.|++++|++.++......|.+..+|..+..++...|++++|...|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555556666666666666666665544555666666666666666666666666666553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=9.8e-06 Score=74.83 Aligned_cols=228 Identities=9% Similarity=-0.001 Sum_probs=127.8
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011652 184 KAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDTGCNPDI-VTYGIMVDVLCKAGRVDEALGIVKSMD 262 (480)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (480)
+|.+.|++...-.+.....+..+..++...+++++| |++++... |+. ..++. ....-...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~--e~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV--EQDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH--HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH--HHHHHHHHHHHHHHHHHHhc
Confidence 577888887664344566777778888888888766 66666432 221 11111 11111112445666666666
Q ss_pred hCCCCccHHHHHHHH--HHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCh
Q 011652 263 STVCRPTSFIYSVLV--HTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNS 340 (480)
Q Consensus 263 ~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 340 (480)
+....++..-..... ......+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+....... ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQ 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HH
Confidence 543333332222111 12223445555555554443321 2345566777778888899999888777665431 13
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLC 420 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (480)
..+..+...+...|++++|...++++.+..|.+...|+.+...+...|+..+|...|.+..... +|-..++..|...+.
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 4677788888999999999999999999888899999999999999999999999999998765 467888888888776
Q ss_pred hcC
Q 011652 421 DKG 423 (480)
Q Consensus 421 ~~g 423 (480)
+..
T Consensus 232 ~~~ 234 (497)
T d1ya0a1 232 KAL 234 (497)
T ss_dssp HHT
T ss_pred Hhh
Confidence 543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.89 E-value=1.3e-05 Score=66.66 Aligned_cols=125 Identities=15% Similarity=0.046 Sum_probs=82.2
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 011652 350 LIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSC 429 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 429 (480)
..+.|++++|+..+++..+..|.+...+..+...|+..|++++|.+.++...+.... +...+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 356788999999999988888888899999999999999999999999988876422 3444444444443333333322
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCC
Q 011652 430 VLLEDMIEKGIRPS-GETFGKLRKLLIKEGREDVLKFLQEKMNLLVKE 476 (480)
Q Consensus 430 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~l~~~ 476 (480)
.........+ .|+ ...+......+.+.|+.++|.+.++++.++.+.
T Consensus 85 ~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 85 QGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp TSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 2111111111 222 223334456677889999999999888887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.86 E-value=0.00014 Score=55.86 Aligned_cols=79 Identities=8% Similarity=-0.114 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011652 340 SRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGL 419 (480)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (480)
...+..+..++.+.|++++|+..++.+.+..+.++..|..+..+|...|++++|...|+.+.+.... +......+..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~ 155 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3456667788899999999999999999988889999999999999999999999999999886532 555555554443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.85 E-value=0.00057 Score=52.22 Aligned_cols=80 Identities=9% Similarity=-0.121 Sum_probs=64.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011652 342 TCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD 421 (480)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (480)
.|..+..+|.+.|++++|+..++.+.+..|.+..+|..+..++...|++++|...|+++....+ .+......+......
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4556777889999999999999999998889999999999999999999999999999998753 255555554444433
Q ss_pred c
Q 011652 422 K 422 (480)
Q Consensus 422 ~ 422 (480)
.
T Consensus 145 ~ 145 (168)
T d1kt1a1 145 A 145 (168)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.77 E-value=0.00059 Score=52.61 Aligned_cols=124 Identities=10% Similarity=0.041 Sum_probs=89.3
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 011652 276 LVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGE 355 (480)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 355 (480)
........|++++|...|.+....- ++.. +......+-+...-..+... ....+..+..++...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 3456788999999999999988642 1110 00001111111111122211 23467778889999999
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 011652 356 TDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKL-----KRFIPSMHTFS 413 (480)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 413 (480)
+++|+..++.+....+.+...|..++.+|.+.|+..+|.+.|+++.. .|+.|+..+-.
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 99999999999998899999999999999999999999999998753 58889876543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.68 E-value=0.00013 Score=54.40 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=45.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011652 108 AKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARV----------QKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALC 177 (480)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (480)
-+.+.+++|+..|+...+..|.++.++..+..++... +.+++|+..|++..+.+ |.+..+|..+..+|.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence 3455577777777777777777777777777666543 33456777777666654 455666666666665
Q ss_pred ccC
Q 011652 178 KSK 180 (480)
Q Consensus 178 ~~~ 180 (480)
..|
T Consensus 87 ~~g 89 (145)
T d1zu2a1 87 SFA 89 (145)
T ss_dssp HHH
T ss_pred Hcc
Confidence 443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.67 E-value=4.5e-05 Score=63.27 Aligned_cols=122 Identities=8% Similarity=-0.091 Sum_probs=81.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHH
Q 011652 107 LAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQ 186 (480)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 186 (480)
..+.|++++|+..+++..+..|.+...+..+...++..|++++|.+.|+...+.. +.+...+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence 4567999999999999999999999999999999999999999999999998764 334445554444443333322221
Q ss_pred HHHHHhhc-CCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHc
Q 011652 187 EIFDCMKD-RFIPDSKTYSILLEGWGKDPNLPRAREIFREMVDT 229 (480)
Q Consensus 187 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (480)
.-...... ..+++...+......+...|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11111000 11222333444556677788888888888887764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.55 E-value=0.00024 Score=52.77 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 011652 357 DEAYRVFRRMIKLCEADADTYTMMIKMFCQ 386 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (480)
++|+..|+++.+..|.+..+|..+..+|..
T Consensus 58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 58 QEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 445555555555444555555555554443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.41 E-value=0.0016 Score=48.82 Aligned_cols=26 Identities=15% Similarity=-0.169 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 011652 448 GKLRKLLIKEGREDVLKFLQEKMNLL 473 (480)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~~~~l 473 (480)
..+..+|...|++++|.+.+++..++
T Consensus 104 ~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 104 YSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.21 E-value=0.0048 Score=46.11 Aligned_cols=88 Identities=15% Similarity=0.071 Sum_probs=57.1
Q ss_pred HHhCCChHHHHHHHHHHHh--cCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC----
Q 011652 350 LIGRGETDEAYRVFRRMIK--LCEA----------DADTYTMMIKMFCQGGELEKAFKVWKYMKLK-----RFIPS---- 408 (480)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~--~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~---- 408 (480)
+...|++++|+..|++..+ ...| ....|+.+..+|...|++++|...+++.... ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 3344555555555555554 1111 1346777788888888888888877776532 11122
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011652 409 -MHTFSVLINGLCDKGIVSDSCVLLEDMIE 437 (480)
Q Consensus 409 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (480)
...+..+..+|...|++++|+..|+++++
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567778889999999999999998874
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.0017 Score=43.87 Aligned_cols=76 Identities=7% Similarity=-0.044 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHH
Q 011652 96 SVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRM-------LNVETFCIIMRKYARVQKVEEAVYTFNVMQKYGVTQNLAA 168 (480)
Q Consensus 96 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 168 (480)
++..+-.+...+.+.|+++.|+..|++..+..+ ....++..+..++.+.|++++|+..++++.+.. |.+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 445555666667777777777777766543211 124566667777777777777777777766654 334444
Q ss_pred HHHH
Q 011652 169 FNGL 172 (480)
Q Consensus 169 ~~~l 172 (480)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0024 Score=43.07 Aligned_cols=77 Identities=9% Similarity=-0.050 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhH
Q 011652 130 NVETFCIIMRKYARVQKVEEAVYTFNVMQKYG-----VTQ-NLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTY 203 (480)
Q Consensus 130 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 203 (480)
+...+..+...+.+.|++++|+..|++..+.. ..+ ...++..+..++.+.|++++|...++++.+..|.+..++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 44555666777777777777777777665431 011 134566666677777777777777777666444445444
Q ss_pred HHH
Q 011652 204 SIL 206 (480)
Q Consensus 204 ~~l 206 (480)
+.+
T Consensus 84 ~Nl 86 (95)
T d1tjca_ 84 GNL 86 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.64 E-value=0.05 Score=37.42 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011652 341 RTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405 (480)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 405 (480)
..+...+..+.++|.-+.-.++++.+.+..++++...-.+..+|.+.|...++.+++.++.+.|.
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34444455555556666666665555555555555556666666666666666666666555553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.28 E-value=0.1 Score=37.14 Aligned_cols=81 Identities=9% Similarity=0.052 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCh
Q 011652 354 GETDEAYRVFRRMIKLCEADADTYTMMIKMFCQ----GGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIV 425 (480)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 425 (480)
.+.++|.+++++..+. -++.....|...|.. ..+.++|.+.|++..+.| ++.....|...|.. ..+.
T Consensus 37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence 4455566666555542 233444444444443 345666666666666655 33444444444443 3456
Q ss_pred HHHHHHHHHHHHcC
Q 011652 426 SDSCVLLEDMIEKG 439 (480)
Q Consensus 426 ~~A~~~~~~~~~~~ 439 (480)
++|.++|++..+.|
T Consensus 112 ~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 112 KQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 66666666665555
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.13 E-value=0.13 Score=36.61 Aligned_cols=111 Identities=12% Similarity=-0.068 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 011652 355 ETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRFIPSMHTFSVLINGLCD----KGIVSDSCV 430 (480)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 430 (480)
+.++|.++|++..+...+.. ...|. .....+.++|.+.+++..+.| +......|...|.. ..+.++|.+
T Consensus 8 d~~~A~~~~~kaa~~g~~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFG--CLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTH--HHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhh--hhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHH
Confidence 45667777776665222222 22222 233468899999999999887 56666667766654 457899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhhC
Q 011652 431 LLEDMIEKGIRPSGETFGKLRKLLIK----EGREDVLKFLQEKMNLLVK 475 (480)
Q Consensus 431 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~l~~ 475 (480)
+|++..+.| ++.....|...|.. ..+.++|.+++++..++..
T Consensus 81 ~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 999999877 45556666666665 3579999999999877654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.90 E-value=0.19 Score=34.73 Aligned_cols=72 Identities=10% Similarity=0.011 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011652 371 EADADTYTMMIKMFCQGG---ELEKAFKVWKYMKLKRFIPSM-HTFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGE 445 (480)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 445 (480)
.++..+--....++++.. +.++++.+++++...+. .+. ..+..+.-+|.+.|++++|.++++.+++. .|+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence 355566666666666553 34567777777665431 132 45556666777777777777777777763 44443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=1.5 Score=38.51 Aligned_cols=204 Identities=9% Similarity=0.041 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHH---HHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 011652 249 GRVDEALGIVKSMDSTVCRPTSFI---YSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIGAFCKANKFKNVY 325 (480)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 325 (480)
.+.+.+..++.............. ...+...+...+..+.+...+......+ .+.......+......+++..+.
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHH
Confidence 577888888888765432222211 1222333445667788888888777654 34555555666667788999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011652 326 RVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMMIKMFCQGGELEKAFKVWKYMKLKRF 405 (480)
Q Consensus 326 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 405 (480)
..+..|... ..-...-.--+..++...|+.+.|...|..+.. .++ -|..| .+- +.|..-. +....+
T Consensus 306 ~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~--~~~--fYG~L-Aa~-~Lg~~~~-------~~~~~~ 371 (450)
T d1qsaa1 306 TWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRG--FYPMV-AAQ-RIGEEYE-------LKIDKA 371 (450)
T ss_dssp HHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCS--HHHHH-HHH-HTTCCCC-------CCCCCC
T ss_pred HHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc--CCC--hHHHH-HHH-HcCCCCC-------CCcCCC
Confidence 988887543 122334445567888899999999999998875 333 23322 221 2222100 000000
Q ss_pred C--CC-HH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011652 406 I--PS-MH---TFSVLINGLCDKGIVSDSCVLLEDMIEKGIRPSGETFGKLRKLLIKEGREDVLKFLQEKMN 471 (480)
Q Consensus 406 ~--p~-~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 471 (480)
+ +. .. .-..-+..+...|....|...+..+... .+......+.....+.|.++.|.....+..
T Consensus 372 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 0 00 00 0112345677889999999999888753 256677788888999999999988776654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.07 E-value=0.54 Score=32.23 Aligned_cols=139 Identities=18% Similarity=0.116 Sum_probs=67.3
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhcCCChhHHHH
Q 011652 142 ARVQKVEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGKDPNLPRARE 221 (480)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (480)
.-.|..++..+++.+..+. .+..-||-++--....-+-+...+.++.+-.-+..+ ..++......
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls------------~C~Nlk~vv~ 77 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------KCQNLKSVVE 77 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG------------GCSCTHHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch------------hhhcHHHHHH
Confidence 3456677777777666652 233444444444444444455555555554422111 1222222222
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCC
Q 011652 222 IFREMVDTGCNPDIVTYGIMVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGI 301 (480)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (480)
.+-.+- .+...+...++.....|+-++-.+++..+.+.+ .+++.....+..+|.+.|...++-+++.+.-+.|+
T Consensus 78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 221111 123334444555556666666666666554433 45555555556666666666666666666555554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.54 E-value=0.16 Score=33.03 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHH
Q 011652 147 VEEAVYTFNVMQKYGVTQNLAAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILL 207 (480)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 207 (480)
.=++.+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++.+..++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3345555566666666777777777777777777777777777776654433444554443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.24 E-value=0.8 Score=31.50 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011652 357 DEAYRVFRRMIKLCEADA-DTYTMMIKMFCQGGELEKAFKVWKYMKL 402 (480)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 402 (480)
++++.+++.+.+..+.+. ..+-.|.-+|.+.|++++|.+.++.+.+
T Consensus 55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344444444444333232 3344444445555555555555555444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.74 E-value=0.55 Score=30.43 Aligned_cols=60 Identities=8% Similarity=0.151 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 011652 321 FKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGETDEAYRVFRRMIKLCEADADTYTMM 380 (480)
Q Consensus 321 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 380 (480)
.-++.+-++.+......|++....+.+++|.+.+++..|.++++.+...+.++...|..+
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yi 81 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 81 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 334555555555666666666666666666666677767666666655333333344433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.69 E-value=3.8 Score=35.67 Aligned_cols=317 Identities=8% Similarity=-0.052 Sum_probs=174.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHH--HHHHHHHHHhcC----------
Q 011652 94 EHSVRAYHSMIESLAKIRQYQIMWDLVNAMRTKRMLNVETFCIIMRKYARVQKVEE--AVYTFNVMQKYG---------- 161 (480)
Q Consensus 94 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--a~~~~~~~~~~~---------- 161 (480)
+.+...-.....+....|+.+.|...+..+-..+...+.....+...+...|.+.. ..+-+..+...|
T Consensus 99 p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~ 178 (450)
T d1qsaa1 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAG 178 (450)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHh
Confidence 34666656677777788888888877777666655444444555554444433221 111122222111
Q ss_pred -CCCCH-HHHHHHHHHHHccCChhhHHHHHHHhhcCCCCChhhHHHHHHHhhc--CCChhHHHHHHHHHHHcCCCCChhh
Q 011652 162 -VTQNL-AAFNGLLSALCKSKNVRKAQEIFDCMKDRFIPDSKTYSILLEGWGK--DPNLPRAREIFREMVDTGCNPDIVT 237 (480)
Q Consensus 162 -~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (480)
++++. ......+.... +...+....... +++......+..++.+ ..+.+.+..++......... +...
T Consensus 179 ~l~~~~~~~~~a~~~l~~---~p~~~~~~~~~~----~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~ 250 (450)
T d1qsaa1 179 QMPADYQTIASAIISLAN---NPNTVLTFARTT----GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQ 250 (450)
T ss_dssp TCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHH
T ss_pred hCChhHHHHHHHHHHHHh---ChHhHHHHHhcC----CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHH
Confidence 11111 12222222221 122222222111 2233333333333332 35778888888887654322 2222
Q ss_pred HHH----HHHHHHhcCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011652 238 YGI----MVDVLCKAGRVDEALGIVKSMDSTVCRPTSFIYSVLVHTYGVENRIEDAVDTFLEMEKNGILADVAMYNALIG 313 (480)
Q Consensus 238 ~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 313 (480)
+.. +.......+..+.+...+......+ .+.......+......+++..+...+..+... ........-.+..
T Consensus 251 ~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gR 327 (450)
T d1qsaa1 251 IQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQAD 327 (450)
T ss_dssp HHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHH
Confidence 222 2223334566788888887776654 34444444555666789999999999888643 2224555567788
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCh-HHHHHHHHHHHhcCCCCHH---HHHHHHHHHHhcCC
Q 011652 314 AFCKANKFKNVYRVLKDMNSKGVAPNSRTCNIILNGLIGRGET-DEAYRVFRRMIKLCEADAD---TYTMMIKMFCQGGE 389 (480)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 389 (480)
++...|+.+.|...|...... ++ |-..+.+- +.|.. .-.. ... ........ .-...+..+...|.
T Consensus 328 a~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~~~~---~~~-~~~~~~~~~~~~~~~ra~~L~~~g~ 396 (450)
T d1qsaa1 328 LLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYELKI---DKA-PQNVDSALTQGPEMARVRELMYWNL 396 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCCCCC---CCC-CSCCCCHHHHSHHHHHHHHHHHTTC
T ss_pred HHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCCCCc---CCC-CccHHHhhhcChHHHHHHHHHHcCC
Confidence 999999999999999998753 32 43333322 12211 0000 000 00000000 11234566778899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011652 390 LEKAFKVWKYMKLKRFIPSMHTFSVLINGLCDKGIVSDSCVLLEDM 435 (480)
Q Consensus 390 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (480)
...|...|..+... .+......+.....+.|.++.|+....+.
T Consensus 397 ~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 397 DNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 99999999988764 25667777788888999999999877665
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