Citrus Sinensis ID: 011669

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
Protein Sequence
MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccHHHHccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEEEEccEEEEccccEEEEEcccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHcccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccEEEEccccccccccHHHcccHHHHHccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHccEEEccccccccEEEEcccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHccccccccEEEEEEcEEEEccccEEEEccHHHHcccccEccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHcccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEcccEcccccEcccccHHHHHHHHHHHHccEEEEEcccccccccccccHEEHcccccccEEEEccccccccccEEEEEcHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEcccccccEcHHHHHHHHHHHHHccEEEEEccccccEEEEccccEccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MQRFAARRVLsetnslrlpqrcffsQLAQKEESSLsehetflprmppfdyspppydgpsaDEILAKRKtflspslfhlyskplnvvdgkmqYLFDENGRRYLDAfggiatvccghchpyvvDSIVNQIKRIQHSTVLYLNHAIADFAEALaskmpgnlKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNayhgnaagtmgataqsnwKFNVVQTgvhhalnpdpyrgvfgadgemYAKDVQDLidfgtsghvagfLSESiqgvggiielapgylpAVYKSIKKAGGLCIADEVQAgfartgshfwgfeahgvvpDIVTMAKgigngiplgavvttpeiAEVLTRRNyfntfggnpvctaAGHAVLKVIQkdklqnnaHVVGSYLKERLTALKDkygiigdvrgrgfllgvefvtdrqlktpakAETLYIMDKMKEMGVLvgkggfygnvfritpplcftkedadYLVDVMDYSLSKM
Flexible Loop (DISEMBL)
mqrfaarrvlsetnslrlpqrcFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFhlyskplnvvdGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGvefvtdrqlktpakAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM
Low Complexity Region (SEG)
MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM
Disordered region (IsUnstruct)
*********************CF***************************************ILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY*****
Disordered Region (DISOPRED)
**************************L***************PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ*****NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM
Disordered Region (DISEMBL)
**********SETNSLRLPQRCFFSQL************TFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM
Disordered Region (DISPRO)
**************S*RLPQRCFFSQLAQKE**********LPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	480	2.2.26 [Sep-21-2011]
Q9SR86	481	Alanine--glyoxylate amino	yes	no	0.997	0.995	0.759	0.0
Q94AL9	477	Alanine--glyoxylate amino	no	no	0.993	1.0	0.747	0.0
Q940M2	476	Alanine--glyoxylate amino	no	no	0.912	0.920	0.659	0.0
Q17QF0	514	Alanine--glyoxylate amino	yes	no	0.979	0.914	0.404	1e-107
Q9BYV1	514	Alanine--glyoxylate amino	yes	no	0.910	0.850	0.417	1e-107
Q5RFA3	514	Alanine--glyoxylate amino	yes	no	0.910	0.850	0.419	1e-107
Q3UEG6	513	Alanine--glyoxylate amino	yes	no	0.902	0.844	0.425	1e-107
Q64565	512	Alanine--glyoxylate amino	yes	no	0.906	0.849	0.417	1e-105
Q6DEB1	509	Ethanolamine-phosphate ph	N/A	no	0.866	0.817	0.431	1e-93
Q8BWU8	499	Ethanolamine-phosphate ph	no	no	0.854	0.821	0.438	8e-93

>sp|Q9SR86|AGT23_ARATH Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/482 (75%), Positives = 426/482 (88%), Gaps = 3/482 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSL--SEHETFLPRMPPFDYSPPPYDGP 58
           M++  A   L + N+  LP R   SQ A +  SS+  +E ET LP+MPPF+YSPPPYDGP
Sbjct: 1   MRKLTAVNSLLKRNNYLLP-RHGSSQTAAQRTSSVRETETETKLPKMPPFNYSPPPYDGP 59

Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
           S  EI+AKR+ FLSP+LFH Y+ PLN+V+ KMQY+FDENGRRYLDAFGGIATV CGHCHP
Sbjct: 60  STAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYLDAFGGIATVSCGHCHP 119

Query: 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178
            VV+S+V Q+K I HST+LYLNH I+DFAEAL S +PG+LKVVFFTNSGTEANELA+MMA
Sbjct: 120 EVVNSVVKQLKLINHSTILYLNHTISDFAEALVSTLPGDLKVVFFTNSGTEANELAMMMA 179

Query: 179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM 238
           RLYTGCNDI+SLRN+YHGNAA TMGATAQSNWKFNVVQ+GVHHA+NPDPYRG+FG+DGE 
Sbjct: 180 RLYTGCNDIVSLRNSYHGNAAATMGATAQSNWKFNVVQSGVHHAINPDPYRGIFGSDGEK 239

Query: 239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298
           YA DV DLI FGTSG VAGF+ ESIQGVGGI+ELAPGYLPA Y  ++KAGG+CIADEVQ+
Sbjct: 240 YASDVHDLIQFGTSGQVAGFIGESIQGVGGIVELAPGYLPAAYDIVRKAGGVCIADEVQS 299

Query: 299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358
           GFARTG+HFWGF++HGV+PDIVTMAKGIGNGIPLGAVVTTPEIA VL+RR+YFNTFGGNP
Sbjct: 300 GFARTGTHFWGFQSHGVIPDIVTMAKGIGNGIPLGAVVTTPEIAGVLSRRSYFNTFGGNP 359

Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           +CTAAGHAVL+V+ ++KLQ NA++VGS+LK RLT LK+KY +IGDVRGRG +LGVEFV D
Sbjct: 360 MCTAAGHAVLRVLHEEKLQENANLVGSHLKRRLTLLKNKYELIGDVRGRGLMLGVEFVKD 419

Query: 419 RQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
           R LKTPAKAETL++MD+MKEMGVLVGKGGFYGNVFRITPPLCFT  DAD+LVDVMD+++S
Sbjct: 420 RDLKTPAKAETLHLMDQMKEMGVLVGKGGFYGNVFRITPPLCFTLSDADFLVDVMDHAMS 479

Query: 479 KM 480
           KM
Sbjct: 480 KM 481

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 4EC: 4

>sp|Q94AL9|AGT22_ARATH Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=AGT3 PE=2 SV=2

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/480 (74%), Positives = 418/480 (87%), Gaps = 3/480 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           MQRFAA+R +    S+ L +RC  S  +Q   +S+ + + F  R+PPF Y+PPPY GPSA
Sbjct: 1   MQRFAAKRSVQNI-SVSLWRRCI-SSTSQAATASVKDSDEFQARLPPFAYTPPPYTGPSA 58

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
           D IL+KRK FLSPS+F LY KPLN+VDGKMQYLFDE+GRRYLDAF GIA V CGHCHP V
Sbjct: 59  DVILSKRKEFLSPSMFCLYRKPLNIVDGKMQYLFDESGRRYLDAFAGIAVVNCGHCHPDV 118

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V+ ++NQIKR+QH TVLYLNHAIADF+EALASK+PG+LKVVFFTNSGTEANELA+MMA+L
Sbjct: 119 VEPVINQIKRLQHPTVLYLNHAIADFSEALASKLPGDLKVVFFTNSGTEANELALMMAKL 178

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTGC DI+++RN YHGNAA TMGAT QS WKFNVVQ  VHHALNPDPYRGVFG+DGE YA
Sbjct: 179 YTGCQDIVAVRNGYHGNAAATMGATGQSMWKFNVVQNSVHHALNPDPYRGVFGSDGEKYA 238

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           KD+QDLI +GT+GH+AGF+ E+IQGVGGI+ELAPGYL A Y ++KKAGGL IADEVQ+GF
Sbjct: 239 KDLQDLIQYGTTGHIAGFICEAIQGVGGIVELAPGYLSAAYDTVKKAGGLFIADEVQSGF 298

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           ARTG +FWGFEAH VVPDIVTMAKGIGNG PLGAVVTTPEIA VLTRR+YFNTFGGN V 
Sbjct: 299 ARTG-NFWGFEAHNVVPDIVTMAKGIGNGFPLGAVVTTPEIAGVLTRRSYFNTFGGNSVS 357

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           T AG AVL VI+K+KLQ NA +VGSYLKE+LT LK+K+ IIGDVRGRG +LGVE V+DR+
Sbjct: 358 TTAGLAVLNVIEKEKLQENAAMVGSYLKEKLTQLKEKHEIIGDVRGRGLMLGVELVSDRK 417

Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           LKTPA AETL+IMD+MKE+GVL+GKGG++GNVFRITPPLCFTK+DAD+LV+ MDYS+SKM
Sbjct: 418 LKTPATAETLHIMDQMKELGVLIGKGGYFGNVFRITPPLCFTKDDADFLVEAMDYSMSKM 477

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q940M2|AGT21_ARATH Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 289/438 (65%), Positives = 364/438 (83%)

Query: 43  PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYL 102
           P +PPF + P PY GPSADE+L KRK FL PSLFH Y KPLN+V+GKMQYL+DE+GRRYL
Sbjct: 39  PHIPPFVHQPRPYKGPSADEVLQKRKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGRRYL 98

Query: 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVF 162
           DAF GI TV CGHCHP ++++I  Q K +QH+T +YL+HAI DFAEALA+KMPGNLKVV+
Sbjct: 99  DAFAGIVTVSCGHCHPDILNAITEQSKLLQHATTIYLHHAIGDFAEALAAKMPGNLKVVY 158

Query: 163 FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA 222
           F NSG+EANELA+MMARLYTG  ++ISLRNAYHG ++ T+G TA + WK+ + Q  +HH 
Sbjct: 159 FVNSGSEANELAMMMARLYTGSLEMISLRNAYHGGSSNTIGLTALNTWKYPLPQGEIHHV 218

Query: 223 LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282
           +NPDPYRGVFG+DG +YAKDV D I++GTSG VAGF++E+IQGVGG +ELAPGYL +VY+
Sbjct: 219 VNPDPYRGVFGSDGSLYAKDVHDHIEYGTSGKVAGFIAETIQGVGGAVELAPGYLKSVYE 278

Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIA 342
            ++ AGG+CIADEVQ GF RTGSH+WGF+   VVPDIVTMAKGIGNG+PLGAVVTTPEIA
Sbjct: 279 IVRNAGGVCIADEVQTGFGRTGSHYWGFQTQDVVPDIVTMAKGIGNGLPLGAVVTTPEIA 338

Query: 343 EVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402
            VL  +  FNTFGGNPVC+A G AVL VI K+K Q +   VGS+L +RL  ++ ++ IIG
Sbjct: 339 SVLASKILFNTFGGNPVCSAGGLAVLNVIDKEKRQEHCAEVGSHLIQRLKDVQKRHDIIG 398

Query: 403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT 462
           DVRGRG ++G+E V+DR+ KTPAKAET  + ++++E+G+LVGKGG +GNVFRI PP+CFT
Sbjct: 399 DVRGRGLMVGIELVSDRKDKTPAKAETSVLFEQLRELGILVGKGGLHGNVFRIKPPMCFT 458

Query: 463 KEDADYLVDVMDYSLSKM 480
           K+DAD+LVD +DYS+S++
Sbjct: 459 KDDADFLVDALDYSISRL 476

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q17QF0|AGT2_BOVIN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Bos taurus GN=AGXT2 PE=2 SV=1

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/497 (40%), Positives = 300/497 (60%), Gaps = 27/497 (5%)

Query: 7   RRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFL-PRMPPFDYSPPPYDGPSADEILA 65
           R +  +T SL +P+ CF S  A+   +S++       P MPP D++P  Y   +   +L 
Sbjct: 10  RSLHLKTLSLWIPKTCF-SLKARAFWTSVTRCGLHTKPSMPPCDFTPERYQSLAYSRVLE 68

Query: 66  KRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIV 125
             K  LSP     + +PL +  G +++LFD  G RYLD F GI TV  GHCHP V  +  
Sbjct: 69  IHKQHLSPVHTAYFPEPLLLHQGHVEWLFDHEGNRYLDFFSGIVTVSVGHCHPKVNAAAQ 128

Query: 126 NQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN 185
            Q+ R+ H++ ++ +  I ++AE L++ +P  LKVVF  NSG+EAN+LA++MAR ++   
Sbjct: 129 RQLGRLWHTSSVFFHPLIHEYAEKLSALLPEPLKVVFLVNSGSEANDLAMLMARAHSNST 188

Query: 186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFGAD--------- 235
           DIIS R AYHG +  T+G T    +K ++    G    + PD + G +G           
Sbjct: 189 DIISFRGAYHGCSPYTLGLTNVGIYKMDLPHGMGCQPTMCPDIFHGPWGGSHCRDSPVQT 248

Query: 236 -------------GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282
                         + Y +  +D +    +  +AGF +E IQGV G+++   G+L   ++
Sbjct: 249 IRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFE 308

Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIA 342
            +++ GG+CIADEVQ GF R GSHFWGF+ H V+PDIVTMAKGIGNG P+ AVVTTP+IA
Sbjct: 309 LVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPDIA 368

Query: 343 EVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII 401
           + LT+R  +FNTFGGNP+  A G AVL+VI+++ LQ N+  VG+Y+  +L  L+D++ I+
Sbjct: 369 KSLTKRMLHFNTFGGNPMACAVGSAVLEVIKEENLQENSQEVGTYMLLKLAKLRDEFEIV 428

Query: 402 GDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLC 460
           GDVRG+G ++G+E V D++ + P  + E   I    K MG+L+G+GG +   FRI P +C
Sbjct: 429 GDVRGKGLMIGIEMVKDKESRQPLPREEVNQIHHDCKCMGLLIGRGGLFSQTFRIAPSMC 488

Query: 461 FTKEDADYLVDVMDYSL 477
            TK + D+ V+V   +L
Sbjct: 489 ITKPEVDFAVEVFRSAL 505

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q9BYV1|AGT2_HUMAN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/462 (41%), Positives = 279/462 (60%), Gaps = 25/462 (5%)

Query: 43  PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYL 102
           PRMPP D+ P  Y     + +L   K  LSP +   + KPL +  G M++LFD  G RYL
Sbjct: 46  PRMPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGSRYL 105

Query: 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVF 162
           D F GI TV  GHCHP V      Q+ R+ H++ ++ +  + ++AE LA+ +P  LKV+F
Sbjct: 106 DFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIF 165

Query: 163 FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHH 221
             NSG+EANELA++MAR ++   DIIS R AYHG +  T+G T    +K  +   TG   
Sbjct: 166 LVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQP 225

Query: 222 ALNPDPYRGVFGAD----------------------GEMYAKDVQDLIDFGTSGHVAGFL 259
            + PD +RG +G                         + Y +  +D +    +  +AGF 
Sbjct: 226 TMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFF 285

Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
           +E IQGV G+++   G+L   ++ ++  GG+CIADEVQ GF R GSHFWGF+ H V+PDI
Sbjct: 286 AEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDI 345

Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTR-RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378
           VTMAKGIGNG P+ AV+TTPEIA+ L +   +FNTFGGNP+  A G AVL+VI+++ LQ 
Sbjct: 346 VTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEENLQE 405

Query: 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKMK 437
           N+  VG+Y+  +   L+D++ I+GDVRG+G ++G+E V D+    P  + E   I +  K
Sbjct: 406 NSQEVGTYMLLKFAKLRDEFEIVGDVRGKGLMIGIEMVQDKISCRPLPREEVNQIHEDCK 465

Query: 438 EMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
            MG+LVG+G  +   FRI P +C TK + D+ V+V   +L++
Sbjct: 466 HMGLLVGRGSIFSQTFRIAPSMCITKPEVDFAVEVFRSALTQ 507

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q5RFA3|AGT2_PONAB Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii GN=AGXT2 PE=2 SV=1

 Score =  388 bits (996), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/462 (41%), Positives = 280/462 (60%), Gaps = 25/462 (5%)

Query: 43  PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYL 102
           PRMPP D+ P  Y     + +L   K  LSP +   + KPL +  G M++LFD  G RYL
Sbjct: 46  PRMPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGNRYL 105

Query: 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVF 162
           D F GI TV  GHCHP V      Q+ R+ H++ ++ +  + ++AE LA+ +P  LKV+F
Sbjct: 106 DFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIF 165

Query: 163 FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHH 221
             NSG+EANELA++MAR ++   DIIS R AYHG +  T+G T    +K  +   TG   
Sbjct: 166 LVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNIGTYKMELPGGTGCQP 225

Query: 222 ALNPDPYRGVFGAD----------------------GEMYAKDVQDLIDFGTSGHVAGFL 259
            + PD +RG +G                         + Y +  +D +    +  +AGF 
Sbjct: 226 TMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFF 285

Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
           +E IQGV G+++   G+L   ++ ++  GG+CIADEVQ GF R GSHF GF+ H V+PDI
Sbjct: 286 AEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFRGFQTHDVLPDI 345

Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378
           VTMAKGIGNG P+ AVVTTPEIA+ L +R  +FNTFGGNP+  A G AVL+VI+++ LQ 
Sbjct: 346 VTMAKGIGNGFPMAAVVTTPEIAKSLVKRLQHFNTFGGNPMACAIGSAVLEVIKEENLQE 405

Query: 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKMK 437
           N+  VG+Y+  +   L+D++ I+GDVRG+G ++G+E V D+  + P  + E   I +  K
Sbjct: 406 NSQEVGTYMLLQFAKLRDEFEIVGDVRGKGLMIGIEMVQDKISRRPLPREEVNQIHEDCK 465

Query: 438 EMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
            MG+LVG+G  +   FRI P +C TK + D+ V+V   +L++
Sbjct: 466 HMGLLVGRGSIFSQTFRIAPSMCITKPEVDFAVEVFRSALTQ 507

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q3UEG6|AGT2_MOUSE Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Mus musculus GN=Agxt2 PE=2 SV=1

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/458 (42%), Positives = 279/458 (60%), Gaps = 25/458 (5%)

Query: 45  MPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDA 104
           MPP D+SP  Y   +   +LA  K  LSP     + KPL +  G M++LFD  G RYLD 
Sbjct: 47  MPPCDFSPEKYQSLAYSRVLAIHKQHLSPVDTAYFRKPLLLHQGHMEWLFDSEGNRYLDF 106

Query: 105 FGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFT 164
           F GI TV  GHCHP V      QI R+ H++ ++ +  + ++AE L++ +P  LKV+F  
Sbjct: 107 FSGIVTVSVGHCHPKVSAVAKKQIDRLWHTSSVFFHSPMHEYAEKLSALLPEPLKVIFLV 166

Query: 165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHHAL 223
           NSG+EAN+LA++MAR ++   DIIS R AYHG +  T+G T    +K  V    G    +
Sbjct: 167 NSGSEANDLAMVMARAHSNHTDIISFRGAYHGCSPYTLGLTNVGIYKMEVPGGIGCQSTM 226

Query: 224 NPDPYRGVFGA----------------------DGEMYAKDVQDLIDFGTSGHVAGFLSE 261
            PD +RG +G                         E Y +  +D ++   +  +AGF +E
Sbjct: 227 CPDVFRGPWGGIHCRDSPVQTVRDCSCAPDCCQAKERYIEQFKDTLNTSVATSIAGFFAE 286

Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT 321
            IQGV G+++    +L   +  +++ GG+CIADEVQ GF R GSHFWGF+ H V+PDIVT
Sbjct: 287 PIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVT 346

Query: 322 MAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA 380
           MAKGIGNG P+ AVVTTPEIA+ L +R  +F+TFGGNP+  A G AVL+VI+++ LQ N+
Sbjct: 347 MAKGIGNGFPMAAVVTTPEIAKSLAKRLLHFSTFGGNPLACAIGSAVLEVIEEENLQRNS 406

Query: 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKMKEM 439
             VG+Y+  +   L+D++ I+GDVRG+G ++G+E V D+  + P  K E   I +  K+M
Sbjct: 407 QEVGTYMLLKFAKLRDEFDIVGDVRGKGLMVGIEMVQDKISRQPLPKTEVNQIHEDCKDM 466

Query: 440 GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
           G+LVG+GG +   FRI PP+C TK + D+  +V   +L
Sbjct: 467 GLLVGRGGNFSQTFRIVPPMCVTKMEVDFAYEVFRAAL 504

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q64565|AGT2_RAT Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Rattus norvegicus GN=Agxt2 PE=1 SV=2

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/460 (41%), Positives = 280/460 (60%), Gaps = 25/460 (5%)

Query: 45  MPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDA 104
           MPP D+SP  Y   + + +L   K  LSP     + KPL +  G M++LFD  G RYLD 
Sbjct: 46  MPPCDFSPEKYQSLAYNHVLEIHKQHLSPVNTAYFQKPLLLHQGHMEWLFDSEGNRYLDF 105

Query: 105 FGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFT 164
           F GI TV  GHCHP V      Q+ R+ H++ ++ +  + ++AE L++ +P  LKV+F  
Sbjct: 106 FSGIVTVGVGHCHPKVTAVAKKQMDRLWHTSSVFFHSPMHEYAERLSALLPEPLKVIFLV 165

Query: 165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT-GVHHAL 223
           NSG+EAN+LA++MAR Y+   DIIS R AYHG +  T+G T    +K  V  T      +
Sbjct: 166 NSGSEANDLAMVMARAYSNHTDIISFRGAYHGCSPYTLGLTNVGIYKMKVPSTIACQSTM 225

Query: 224 NPDPYRGVFGA------------------DG----EMYAKDVQDLIDFGTSGHVAGFLSE 261
            PD +RG +G                   DG    E Y +  +D ++   +  +AGF +E
Sbjct: 226 CPDVFRGPWGGSHCRDSPVQTVRKCSCAPDGCQAKERYIEQFKDTLNTSVATSIAGFFAE 285

Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT 321
            IQGV G+++    +L   +  +++ GG+CIADEVQ GF R GSHFWGF+ H  +PDIVT
Sbjct: 286 PIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDTMPDIVT 345

Query: 322 MAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA 380
           MAKGIGNG P+ AVVTTPEIA  L +  ++F+TFGG+P+  A G AVL+VI+++ LQ N+
Sbjct: 346 MAKGIGNGFPMAAVVTTPEIASSLAKHLHHFSTFGGSPLACAIGSAVLEVIEEENLQRNS 405

Query: 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKMKEM 439
             VG+Y+  +   L+D++ I+GDVRG+G ++G+E V D+  + P  K E   I +  K+M
Sbjct: 406 QEVGTYMLLKFAKLRDEFDIVGDVRGKGLMVGIEMVQDKISRQPLPKTEVNQIHEDCKDM 465

Query: 440 GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
           G+LVG+GG +   FRI PP+  TK + D+  +V   +L++
Sbjct: 466 GLLVGRGGNFSQTFRIAPPMRVTKLEVDFAFEVFRSALTQ 505

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q6DEB1|AT2L1_XENLA Ethanolamine-phosphate phospho-lyase OS=Xenopus laevis GN=agxt2l1 PE=2 SV=1

 Score =  343 bits (881), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 189/438 (43%), Positives = 263/438 (60%), Gaps = 22/438 (5%)

Query: 59  SADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           + ++I+  RK  + PS    ++  P+ +V  K QY+FDE G RYLD    +A V  GH H
Sbjct: 6   TKEKIMEIRKKHIGPSCKVFFANDPIKIVHAKGQYMFDEKGERYLDCINNVAHV--GHSH 63

Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P V  + + Q++ + ++   +L+  +  +AE L S +P  L V +F NSG+EAN+LA+ +
Sbjct: 64  PEVTKAALKQMELL-NTNSRFLHDNLVRYAECLISTLPEKLSVCYFVNSGSEANDLALRL 122

Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-----QTGVHHALNPDPYRGVF 232
           AR YTG  D+I+L +AYHG+    +     S +KF+ +     +  +H A +PD YRG +
Sbjct: 123 ARQYTGHQDVITLDHAYHGHVTSLIDI---SPYKFHQLGKDAQKEYIHVAPSPDTYRGKY 179

Query: 233 GAD----GEMYAKDVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286
             D       YAKDV+D+I         +A F++ES+Q  GG I    GY   V + + K
Sbjct: 180 REDHPDPASAYAKDVEDIIQKAHQNKRQIAAFIAESMQSCGGQIIPPAGYFQKVSEFVHK 239

Query: 287 AGGLCIADEVQAGFARTGSHFWGFEAHG--VVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           AGG+ IADEVQ GF R G HFW F+  G   +PDIVTM K IGNG P+  VVTT EIAE 
Sbjct: 240 AGGVFIADEVQVGFGRVGKHFWSFQLQGEDFLPDIVTMGKPIGNGHPMSCVVTTKEIAEA 299

Query: 345 L--TRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402
              T   YFNTFGGNPV  A G AVL +I+K+ L+ NA  VG+YL E L   K K+ +IG
Sbjct: 300 FGATGMEYFNTFGGNPVSCAIGLAVLDIIEKEDLRGNATTVGNYLTELLNEQKQKHPLIG 359

Query: 403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT 462
           D+RG G  +GV+ V DR  +TPA AE  +I+ K+KE  +L+   G Y NV +  PP+CF 
Sbjct: 360 DIRGVGLFVGVDLVKDRLFRTPATAEAQHIIYKLKEKRILLSADGPYRNVLKFKPPMCFN 419

Query: 463 KEDADYLVDVMDYSLSKM 480
           KEDA  +VD +D  L+ +
Sbjct: 420 KEDAKLVVDEIDQCLTAL 437

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BWU8|AT2L1_MOUSE Ethanolamine-phosphate phospho-lyase OS=Mus musculus GN=Agxt2l1 PE=2 SV=1

 Score =  341 bits (874), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 189/431 (43%), Positives = 268/431 (62%), Gaps = 21/431 (4%)

Query: 59  SADEILAKRKTFLSPSLFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           S  + LA R+  + PS    ++  P+ ++  + QY+FDE G RYLD    +A V  GHCH
Sbjct: 6   SKQDTLALRERHIGPSCKIFFAADPIKIMRAQGQYMFDEKGERYLDCINNVAHV--GHCH 63

Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P VV +   Q++ + ++   +L+  I +FA+ L + +P  L V +FTNSG+EAN+LA+ +
Sbjct: 64  PEVVKAAAKQMELL-NTNSRFLHDNIIEFAKRLTATLPQELSVCYFTNSGSEANDLALRL 122

Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF----NVVQTGVHHALNPDPYRGVFG 233
           AR + G  D+I+L +AYHG+ +  +     S +KF    +V +  VH A  PD YRG + 
Sbjct: 123 ARQFRGHQDVITLDHAYHGHLSSLIEI---SPYKFQKGKDVKRETVHVAPAPDTYRGKYR 179

Query: 234 ADGE----MYAKDVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287
            D E     YA +V+ +I+   S    +A F++ES+Q  GG I    GY   V + I KA
Sbjct: 180 EDHEDPSTAYADEVKKIIEEAHSSGRKIAAFIAESMQSCGGQIIPPAGYFQKVAEHIHKA 239

Query: 288 GGLCIADEVQAGFARTGSHFWGFEAHG--VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL 345
           GG+ IADEVQ GF R G +FW F+ +G   VPDIVTM K +GNG P+  VVTT EIAE  
Sbjct: 240 GGVFIADEVQVGFGRVGRYFWSFQMYGEDFVPDIVTMGKPMGNGHPISCVVTTKEIAEAF 299

Query: 346 TRR--NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD 403
           +     YFNT+GGNPV  A G AVL VI+K+ LQ NA  VG+YL E L+  K K+ +IGD
Sbjct: 300 SSSGMEYFNTYGGNPVSCAVGLAVLDVIEKENLQGNAVRVGTYLMELLSEQKAKHPLIGD 359

Query: 404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTK 463
           +RG G  +G++ V DR+ +TPA AE  +I+ +MK  GVL+   G + NV +I PP+CFT+
Sbjct: 360 IRGVGLFIGIDLVKDREKRTPATAEAQHIIYEMKGKGVLLSADGPHRNVLKIKPPMCFTE 419

Query: 464 EDADYLVDVMD 474
           +DA +LVD +D
Sbjct: 420 DDAKFLVDHLD 430

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
255580991	480	alanine-glyoxylate aminotransferase, put	0.997	0.997	0.841	0.0
224140569	479	predicted protein [Populus trichocarpa]	0.995	0.997	0.841	0.0
224091092	477	predicted protein [Populus trichocarpa]	0.993	1.0	0.835	0.0
225439615	477	PREDICTED: alanine--glyoxylate aminotran	0.993	1.0	0.825	0.0
452090844	477	putative beta-alanine-pyruvate aminotran	0.993	1.0	0.8	0.0
449464422	477	PREDICTED: alanine--glyoxylate aminotran	0.993	1.0	0.797	0.0
297735576	436	unnamed protein product [Vitis vinifera]	0.908	1.0	0.869	0.0
225434396	478	PREDICTED: alanine--glyoxylate aminotran	0.995	1.0	0.793	0.0
15231974	481	PYRIMIDINE 4 [Arabidopsis thaliana] gi|7	0.997	0.995	0.759	0.0
356496283	475	PREDICTED: alanine--glyoxylate aminotran	0.989	1.0	0.766	0.0

>gi|255580991|ref|XP_002531313.1| alanine-glyoxylate aminotransferase, putative [Ricinus communis] gi|223529081|gb|EEF31063.1| alanine-glyoxylate aminotransferase, putative [Ricinus communis]

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/481 (84%), Positives = 445/481 (92%), Gaps = 2/481 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESS-LSEHETFLPRMPPFDYSPPPYDGPS 59
           MQRF ARRVLSET S     RCFFSQLAQKE SS + E+E F+P+MPPFDYSPPPY GPS
Sbjct: 1   MQRFIARRVLSETKSFP-SSRCFFSQLAQKESSSSVHENEVFIPKMPPFDYSPPPYTGPS 59

Query: 60  ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPY 119
           A EI+AKRK FLSPS+FH Y KPLNVVDGKMQYLFDENGRRY+DAFGGIATVCCGHCHP 
Sbjct: 60  AAEIIAKRKEFLSPSIFHFYDKPLNVVDGKMQYLFDENGRRYVDAFGGIATVCCGHCHPE 119

Query: 120 VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR 179
           VVDSIV QI RIQHSTVLYLNHAI+DFAEALASKMPGNLKVVFFTNSGTEANELA+M+AR
Sbjct: 120 VVDSIVKQINRIQHSTVLYLNHAISDFAEALASKMPGNLKVVFFTNSGTEANELAMMIAR 179

Query: 180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY 239
           LYTGCNDIISLRNAYHGNA+GTMGATAQSNWKFNV+Q+G+HHALNPDPYRGVFG+DGE Y
Sbjct: 180 LYTGCNDIISLRNAYHGNASGTMGATAQSNWKFNVIQSGIHHALNPDPYRGVFGSDGEKY 239

Query: 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299
           A+DVQ++IDFGT+GHVAGF+SE+IQGVGGI+ELAPGYLPA Y SI+KAGG+CIADEVQ+G
Sbjct: 240 ARDVQEIIDFGTTGHVAGFISEAIQGVGGIVELAPGYLPAAYNSIRKAGGVCIADEVQSG 299

Query: 300 FARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPV 359
           FARTGSHFWGFE  GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR+YFNTFGGNPV
Sbjct: 300 FARTGSHFWGFETQGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRSYFNTFGGNPV 359

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
           CTAAG AVL+VI+K+ LQ NA +VGS+LK RL  LKDKY IIGDVRG+G +LGVE VTDR
Sbjct: 360 CTAAGLAVLRVIEKENLQENASIVGSHLKNRLNELKDKYEIIGDVRGKGLMLGVELVTDR 419

Query: 420 QLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
           Q KTPAKAETL+IMD+MKE+GVLVGKGGFYGNVFRITPPLCFTK+DAD+LVD MDY++SK
Sbjct: 420 QQKTPAKAETLHIMDQMKEIGVLVGKGGFYGNVFRITPPLCFTKQDADFLVDAMDYTMSK 479

Query: 480 M 480
           M
Sbjct: 480 M 480

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140569|ref|XP_002323655.1| predicted protein [Populus trichocarpa] gi|222868285|gb|EEF05416.1| predicted protein [Populus trichocarpa]

 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/481 (84%), Positives = 443/481 (92%), Gaps = 3/481 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEES-SLSEHETFLPRMPPFDYSPPPYDGPS 59
           MQRF A+RVLS TNSLR   RCF SQLAQK+ S ++ +++  +P++PPFDYSPPPY GPS
Sbjct: 1   MQRFIAKRVLSSTNSLR-SHRCF-SQLAQKQTSFAVHDNDIPVPKLPPFDYSPPPYTGPS 58

Query: 60  ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPY 119
           AD ILAKRK +LSPSLFH +SKPLNVVDGKMQYLFDENGRRYLD FGGIATVCCGHCHP 
Sbjct: 59  ADLILAKRKQYLSPSLFHFFSKPLNVVDGKMQYLFDENGRRYLDGFGGIATVCCGHCHPD 118

Query: 120 VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR 179
           VVD+IV Q+ RIQHSTVLYLNH IADFAEALASKMPGNLKVVFFTNSGTEANELA+M+AR
Sbjct: 119 VVDAIVKQVNRIQHSTVLYLNHVIADFAEALASKMPGNLKVVFFTNSGTEANELALMIAR 178

Query: 180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY 239
           LYTGC DIISLRN YHGNAAGTMGATAQS WKFNV+Q+GVHHALNPDPYRGVFG+DGEMY
Sbjct: 179 LYTGCQDIISLRNGYHGNAAGTMGATAQSLWKFNVIQSGVHHALNPDPYRGVFGSDGEMY 238

Query: 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299
           AKDVQD+IDFGTSGHVAGF+SE+IQGVGGIIELAP YLPA YKSIKKAGGLCIADEVQAG
Sbjct: 239 AKDVQDIIDFGTSGHVAGFISEAIQGVGGIIELAPDYLPAAYKSIKKAGGLCIADEVQAG 298

Query: 300 FARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPV 359
           F RTGSHFWGFEA GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR YFNTFGGNP+
Sbjct: 299 FGRTGSHFWGFEAQGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRCYFNTFGGNPL 358

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
           CTAAG AVLKVI+K+ LQ NA VVGS+LK+RLT LKDKY IIGDVRG+G +LGVE VTDR
Sbjct: 359 CTAAGLAVLKVIEKENLQENALVVGSHLKKRLTELKDKYEIIGDVRGKGLMLGVELVTDR 418

Query: 420 QLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
           Q KTPAKAETL++M++MKE+GVL+GKGGFYGNVFRITPPLCFTKEDAD+LVD MDY++SK
Sbjct: 419 QQKTPAKAETLHVMEQMKELGVLIGKGGFYGNVFRITPPLCFTKEDADFLVDAMDYTMSK 478

Query: 480 M 480
           M
Sbjct: 479 M 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091092|ref|XP_002309175.1| predicted protein [Populus trichocarpa] gi|222855151|gb|EEE92698.1| predicted protein [Populus trichocarpa]

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/480 (83%), Positives = 442/480 (92%), Gaps = 3/480 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           M+RF  +RVLS TNSLR P RCF SQ AQK+ + L E+E  +P++PPFDYSPPPY GPSA
Sbjct: 1   MKRFITKRVLSSTNSLRSP-RCF-SQHAQKQ-TPLPENEIPVPKLPPFDYSPPPYTGPSA 57

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
           +EILAKRK +LSPSLFH +SKPLNVVDGKMQYLFDENGRRYLD FGGIATVCCGHCHP V
Sbjct: 58  EEILAKRKEYLSPSLFHFFSKPLNVVDGKMQYLFDENGRRYLDGFGGIATVCCGHCHPDV 117

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           VD+IV QI RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA+M+ARL
Sbjct: 118 VDAIVKQINRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAMMIARL 177

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTGC DIISLRNAYHGNAA TMGATAQS WKFNV+Q+GVHHALNPDPYRGVFG+DGE YA
Sbjct: 178 YTGCQDIISLRNAYHGNAAATMGATAQSVWKFNVIQSGVHHALNPDPYRGVFGSDGEKYA 237

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           KDVQD+IDFGT+GHVAGF+SE+IQGVGGIIELAPGYLPA Y S++KAGGLCI+DEVQAGF
Sbjct: 238 KDVQDIIDFGTTGHVAGFISEAIQGVGGIIELAPGYLPAAYGSVRKAGGLCISDEVQAGF 297

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
            RTG+HFWGFE  GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR+YFNTFGGNP+C
Sbjct: 298 GRTGNHFWGFETQGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRSYFNTFGGNPLC 357

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TAAG AVLKV++K+ LQ NA VVGSYLK+RLT LKDKY IIGDVRG+G +LGVE VTDRQ
Sbjct: 358 TAAGLAVLKVMEKENLQENALVVGSYLKKRLTELKDKYEIIGDVRGKGLMLGVELVTDRQ 417

Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
            KTPAKAETL++M++MKE+GVL+GKGGFYGNVFRITPPLCFTKEDAD+LVD MDYS+SKM
Sbjct: 418 QKTPAKAETLHVMEQMKELGVLIGKGGFYGNVFRITPPLCFTKEDADFLVDAMDYSISKM 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439615|ref|XP_002267787.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [Vitis vinifera]

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/480 (82%), Positives = 434/480 (90%), Gaps = 3/480 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           MQRF   RV  E + L+   R   SQL Q + + L E++  LP+MPPFDYSPPPY+GPSA
Sbjct: 1   MQRFVVGRVSQEKHFLQW--RRNLSQLVQNK-APLQENDLLLPKMPPFDYSPPPYNGPSA 57

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
            +IL KRK +LSPS+F  Y++P+N+VDGKMQYLFDE GRRYLDAFGGIATV CGHCHP V
Sbjct: 58  ADILQKRKQYLSPSIFCFYNQPVNIVDGKMQYLFDEKGRRYLDAFGGIATVNCGHCHPDV 117

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           VD IV QI R+QHSTVLYLNHAIADFAEALASKMPG+LKVVFFTNSGTEANELA+MMARL
Sbjct: 118 VDVIVKQINRLQHSTVLYLNHAIADFAEALASKMPGDLKVVFFTNSGTEANELAMMMARL 177

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTGCNDIISLRNAYHGNAAGTMGATAQ  WKFNVVQTGVHHALNPDPYRG+FG+DGE YA
Sbjct: 178 YTGCNDIISLRNAYHGNAAGTMGATAQRVWKFNVVQTGVHHALNPDPYRGMFGSDGEKYA 237

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           +DVQDLIDFGTSGHVAGF+SE+IQGVGGI+ELAPGYLPAVY S+KKAGGL IADEVQ+GF
Sbjct: 238 RDVQDLIDFGTSGHVAGFISEAIQGVGGIVELAPGYLPAVYSSVKKAGGLFIADEVQSGF 297

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           ARTGSHFWGFE+ GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC
Sbjct: 298 ARTGSHFWGFESQGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 357

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           T AGHAVLKVI+K+KLQ NA+VVGSYLKERL +LKDKY IIGDVRGRG +LGVEFVTDR+
Sbjct: 358 TTAGHAVLKVIEKEKLQENAYVVGSYLKERLLSLKDKYEIIGDVRGRGLMLGVEFVTDRK 417

Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           LKTPA  E L+IMD+MKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD+ VDVMDY++SKM
Sbjct: 418 LKTPANVEILHIMDQMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADFFVDVMDYAMSKM 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|452090844|gb|AGF95093.1| putative beta-alanine-pyruvate aminotransferase [Prunus persica]

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/480 (80%), Positives = 432/480 (90%), Gaps = 3/480 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           MQ    RRVLS T    L QRCF SQ+AQ E   L ++    P+MP FDY+PPPY GP+A
Sbjct: 1   MQGLIGRRVLSGTAQSLLRQRCF-SQVAQSE--VLPDNGVATPKMPLFDYTPPPYTGPTA 57

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
           DEILA+RK +LSPS+F+ Y+KPLN+VDGK QYLFDE+GRRYLD FGGIATV CGHCHP V
Sbjct: 58  DEILAQRKEYLSPSMFYFYNKPLNIVDGKRQYLFDESGRRYLDGFGGIATVSCGHCHPDV 117

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V++IVNQ KRIQHST+LYLNHAI DFA+ALASK+P NLKVVFFTNSGTEANELA+++ARL
Sbjct: 118 VEAIVNQTKRIQHSTILYLNHAIGDFAQALASKLPANLKVVFFTNSGTEANELAMLIARL 177

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTG +DIISLRNAYHGNAAGTMGATAQ NWKFNV+Q+GVHHA+NPDPYRGVFGADGE YA
Sbjct: 178 YTGSHDIISLRNAYHGNAAGTMGATAQGNWKFNVIQSGVHHAVNPDPYRGVFGADGEKYA 237

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
            DVQDLIDFGTSGHVAGF+ E+IQGVGGI+ELA GYLPAVY S+KKAGGL IADEVQ GF
Sbjct: 238 NDVQDLIDFGTSGHVAGFMCEAIQGVGGIVELAQGYLPAVYNSVKKAGGLFIADEVQCGF 297

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           ARTGS+FWGFE HGVVPDIVTMAKGIGNGIPLGAVVTTPE+AEVLTRRNYFNTFGGNPVC
Sbjct: 298 ARTGSNFWGFEGHGVVPDIVTMAKGIGNGIPLGAVVTTPEVAEVLTRRNYFNTFGGNPVC 357

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TAAG AVLKVI+K+KLQ+NA VVGSYLKERL ALKDKY +IGDVRGRG +LGVE VTDR+
Sbjct: 358 TAAGLAVLKVIEKEKLQDNAFVVGSYLKERLNALKDKYELIGDVRGRGLMLGVELVTDRE 417

Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           LKTPAKAET++IM+KMK++GVL+GKGGFYGNVFRITPPLCFTK+DAD+LVD MDY++SK+
Sbjct: 418 LKTPAKAETVHIMEKMKDLGVLIGKGGFYGNVFRITPPLCFTKDDADFLVDAMDYTISKI 477

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464422|ref|XP_004149928.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Cucumis sativus]

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/480 (79%), Positives = 434/480 (90%), Gaps = 3/480 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           MQR   RR+ S +N+  L +  +FSQ A  + S    ++  LP +PPFDYSPPPY+GPSA
Sbjct: 1   MQRLIRRRLFSPSNT-SLSRLRYFSQPAHNQPSL--HNDVPLPSIPPFDYSPPPYNGPSA 57

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
           DEIL+KRK FLSP++ H Y  PL VVDGK QYLFD+ GRRYLDAFGGIATVCCGHCHP V
Sbjct: 58  DEILSKRKEFLSPAISHYYRNPLLVVDGKRQYLFDDKGRRYLDAFGGIATVCCGHCHPDV 117

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V++I+NQ KR+QHSTVLYLN +I+DFAEALASK+PG+LKVVFFTNSGTEANELAIMMARL
Sbjct: 118 VEAILNQTKRLQHSTVLYLNQSISDFAEALASKLPGDLKVVFFTNSGTEANELAIMMARL 177

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTGC+DIISLRNAYHGNAAGTMGATAQS WKFNV+Q+GVHHALNPDPYRGVFGADGEMYA
Sbjct: 178 YTGCHDIISLRNAYHGNAAGTMGATAQSIWKFNVIQSGVHHALNPDPYRGVFGADGEMYA 237

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           KDVQ+LI+FGTSGHV  F+SE+IQGVGGI+ELAPGYLPAVYKSIKKAGGLCIADEVQAGF
Sbjct: 238 KDVQNLIEFGTSGHVGAFISEAIQGVGGIVELAPGYLPAVYKSIKKAGGLCIADEVQAGF 297

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           ARTGS FWGFE+ GVVPDIVT+AKGIGNG PLGAVVTTPEIA+VLTR +YFNTFGGNPVC
Sbjct: 298 ARTGSSFWGFESQGVVPDIVTLAKGIGNGTPLGAVVTTPEIAKVLTRSSYFNTFGGNPVC 357

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TAAG AVLKVI+K+KLQ NAH+VGS+LK+RLTALKDK+ IIGDVRGRG +LGVE VTDR+
Sbjct: 358 TAAGLAVLKVIEKEKLQENAHIVGSHLKDRLTALKDKHHIIGDVRGRGLMLGVELVTDRE 417

Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           LKTPAKAETL++MD+MKE+GVL+GKGG+YGNVFRITPPLCFTK+DAD+LVD MDY +SKM
Sbjct: 418 LKTPAKAETLHVMDQMKELGVLIGKGGYYGNVFRITPPLCFTKQDADFLVDAMDYIMSKM 477

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735576|emb|CBI18070.3| unnamed protein product [Vitis vinifera]

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/436 (86%), Positives = 410/436 (94%)

Query: 45  MPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDA 104
           MPPFDYSPPPY+GPSA +IL KRK +LSPS+F  Y++P+N+VDGKMQYLFDE GRRYLDA
Sbjct: 1   MPPFDYSPPPYNGPSAADILQKRKQYLSPSIFCFYNQPVNIVDGKMQYLFDEKGRRYLDA 60

Query: 105 FGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFT 164
           FGGIATV CGHCHP VVD IV QI R+QHSTVLYLNHAIADFAEALASKMPG+LKVVFFT
Sbjct: 61  FGGIATVNCGHCHPDVVDVIVKQINRLQHSTVLYLNHAIADFAEALASKMPGDLKVVFFT 120

Query: 165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN 224
           NSGTEANELA+MMARLYTGCNDIISLRNAYHGNAAGTMGATAQ  WKFNVVQTGVHHALN
Sbjct: 121 NSGTEANELAMMMARLYTGCNDIISLRNAYHGNAAGTMGATAQRVWKFNVVQTGVHHALN 180

Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
           PDPYRG+FG+DGE YA+DVQDLIDFGTSGHVAGF+SE+IQGVGGI+ELAPGYLPAVY S+
Sbjct: 181 PDPYRGMFGSDGEKYARDVQDLIDFGTSGHVAGFISEAIQGVGGIVELAPGYLPAVYSSV 240

Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           KKAGGL IADEVQ+GFARTGSHFWGFE+ GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV
Sbjct: 241 KKAGGLFIADEVQSGFARTGSHFWGFESQGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 300

Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
           LTRRNYFNTFGGNPVCT AGHAVLKVI+K+KLQ NA+VVGSYLKERL +LKDKY IIGDV
Sbjct: 301 LTRRNYFNTFGGNPVCTTAGHAVLKVIEKEKLQENAYVVGSYLKERLLSLKDKYEIIGDV 360

Query: 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE 464
           RGRG +LGVEFVTDR+LKTPA  E L+IMD+MKEMGVLVGKGGFYGNVFRITPPLCFTKE
Sbjct: 361 RGRGLMLGVEFVTDRKLKTPANVEILHIMDQMKEMGVLVGKGGFYGNVFRITPPLCFTKE 420

Query: 465 DADYLVDVMDYSLSKM 480
           DAD+ VDVMDY++SKM
Sbjct: 421 DADFFVDVMDYAMSKM 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434396|ref|XP_002270785.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Vitis vinifera]

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/480 (79%), Positives = 432/480 (90%), Gaps = 2/480 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           MQR +        + L+L +R   S+LAQ +  +L + +  LP+MPPFDYSPPPY GPSA
Sbjct: 1   MQRISKISGALSGSYLQLCRRSL-SRLAQTQ-PALVDDDAVLPKMPPFDYSPPPYTGPSA 58

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
            EIL KR+ +LSPSLFH YS PLN+VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP V
Sbjct: 59  AEILKKRQEYLSPSLFHFYSNPLNLVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPDV 118

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V++IV+Q +R+QHSTVLYLNHAIA+FAEALASKMPG+LKVVFFTNSGTEANELA+M+ARL
Sbjct: 119 VEAIVSQTQRLQHSTVLYLNHAIAEFAEALASKMPGDLKVVFFTNSGTEANELAMMIARL 178

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTG +DIISLRNAYHGNAA TM ATAQ N+KFNVVQTGVHHALNPD YRGVFG+DG  YA
Sbjct: 179 YTGFHDIISLRNAYHGNAAATMSATAQCNYKFNVVQTGVHHALNPDQYRGVFGSDGLKYA 238

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           KDVQDLID+GT G+VAGFL+E+IQGVGGI+ELAPGYL AVY +IKKAGGLCIADEVQ+GF
Sbjct: 239 KDVQDLIDYGTCGNVAGFLAEAIQGVGGILELAPGYLAAVYGTIKKAGGLCIADEVQSGF 298

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           ARTGSHFWGFEAHGVVPDIVTMAKGIGNG+P+GAVVTTPEIA+VLT R YFNTFGGNPV 
Sbjct: 299 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGVPIGAVVTTPEIAKVLTYRTYFNTFGGNPVS 358

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TA+G AVL+VI+K+KLQ NAHVVGSYLK+RLT+LK+K+ IIGDVRGRG +LGVE VTDRQ
Sbjct: 359 TASGLAVLRVIEKEKLQENAHVVGSYLKDRLTSLKEKHEIIGDVRGRGLMLGVELVTDRQ 418

Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           LKTPAK ETL++MDKMKEMGVL+GKGGFYGNVFRITPPLCFTKEDAD+LVDVMDY++S+M
Sbjct: 419 LKTPAKVETLHVMDKMKEMGVLIGKGGFYGNVFRITPPLCFTKEDADFLVDVMDYTMSRM 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231974|ref|NP_187498.1| PYRIMIDINE 4 [Arabidopsis thaliana] gi|75313797|sp|Q9SR86.1|AGT23_ARATH RecName: Full=Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial; AltName: Full=Beta-alanine-pyruvate aminotransferase 3; Flags: Precursor gi|6403506|gb|AAF07846.1|AC010871_22 putative aminotransferase [Arabidopsis thaliana] gi|20466700|gb|AAM20667.1| putative aminotransferase [Arabidopsis thaliana] gi|110740902|dbj|BAE98547.1| aminotransferase like protein [Arabidopsis thaliana] gi|332641167|gb|AEE74688.1| PYRIMIDINE 4 [Arabidopsis thaliana]

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/482 (75%), Positives = 426/482 (88%), Gaps = 3/482 (0%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSL--SEHETFLPRMPPFDYSPPPYDGP 58
           M++  A   L + N+  LP R   SQ A +  SS+  +E ET LP+MPPF+YSPPPYDGP
Sbjct: 1   MRKLTAVNSLLKRNNYLLP-RHGSSQTAAQRTSSVRETETETKLPKMPPFNYSPPPYDGP 59

Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
           S  EI+AKR+ FLSP+LFH Y+ PLN+V+ KMQY+FDENGRRYLDAFGGIATV CGHCHP
Sbjct: 60  STAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYLDAFGGIATVSCGHCHP 119

Query: 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178
            VV+S+V Q+K I HST+LYLNH I+DFAEAL S +PG+LKVVFFTNSGTEANELA+MMA
Sbjct: 120 EVVNSVVKQLKLINHSTILYLNHTISDFAEALVSTLPGDLKVVFFTNSGTEANELAMMMA 179

Query: 179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM 238
           RLYTGCNDI+SLRN+YHGNAA TMGATAQSNWKFNVVQ+GVHHA+NPDPYRG+FG+DGE 
Sbjct: 180 RLYTGCNDIVSLRNSYHGNAAATMGATAQSNWKFNVVQSGVHHAINPDPYRGIFGSDGEK 239

Query: 239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298
           YA DV DLI FGTSG VAGF+ ESIQGVGGI+ELAPGYLPA Y  ++KAGG+CIADEVQ+
Sbjct: 240 YASDVHDLIQFGTSGQVAGFIGESIQGVGGIVELAPGYLPAAYDIVRKAGGVCIADEVQS 299

Query: 299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358
           GFARTG+HFWGF++HGV+PDIVTMAKGIGNGIPLGAVVTTPEIA VL+RR+YFNTFGGNP
Sbjct: 300 GFARTGTHFWGFQSHGVIPDIVTMAKGIGNGIPLGAVVTTPEIAGVLSRRSYFNTFGGNP 359

Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           +CTAAGHAVL+V+ ++KLQ NA++VGS+LK RLT LK+KY +IGDVRGRG +LGVEFV D
Sbjct: 360 MCTAAGHAVLRVLHEEKLQENANLVGSHLKRRLTLLKNKYELIGDVRGRGLMLGVEFVKD 419

Query: 419 RQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
           R LKTPAKAETL++MD+MKEMGVLVGKGGFYGNVFRITPPLCFT  DAD+LVDVMD+++S
Sbjct: 420 RDLKTPAKAETLHLMDQMKEMGVLVGKGGFYGNVFRITPPLCFTLSDADFLVDVMDHAMS 479

Query: 479 KM 480
           KM
Sbjct: 480 KM 481

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496283|ref|XP_003516998.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [Glycine max]

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/480 (76%), Positives = 425/480 (88%), Gaps = 5/480 (1%)

Query: 1   MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLPRMPPFDYSPPPYDGPSA 60
           M  F A R++   +   L +R F     + E+ +++     +P +P FDYSPPPY GP+A
Sbjct: 1   MTVFLATRLVLRRSPPLLWRRSFSRAAVEAEKDTVA-----VPSLPLFDYSPPPYAGPTA 55

Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
           DEILAKR+ +LSPS+ H Y  P+N+V+GK QYLFDE GRRY+DAFGGIATVCCGHCHP V
Sbjct: 56  DEILAKRREYLSPSILHFYKNPVNIVEGKKQYLFDEKGRRYVDAFGGIATVCCGHCHPDV 115

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V++IVNQ K++QHSTVLYLN+AIADFA+AL SK+PGNLKVVFFTNSGTEANELAI++ARL
Sbjct: 116 VEAIVNQTKKLQHSTVLYLNNAIADFAQALTSKLPGNLKVVFFTNSGTEANELAILIARL 175

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           YTGC+DIISLRNAYHGNAAGTMGATAQS WKFNVVQ+GVHHA+NPDPYRG+FG+DGE YA
Sbjct: 176 YTGCHDIISLRNAYHGNAAGTMGATAQSIWKFNVVQSGVHHAVNPDPYRGIFGSDGEKYA 235

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           +DVQD+I+FGTSG+VA F+SE+IQGVGGIIELAPGYLPAVY +IKK GGL IADEVQAGF
Sbjct: 236 RDVQDIINFGTSGNVAAFISEAIQGVGGIIELAPGYLPAVYNTIKKTGGLFIADEVQAGF 295

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
            RTGSHFWGFEAH VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR+YFNTFGGNPVC
Sbjct: 296 GRTGSHFWGFEAHNVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRSYFNTFGGNPVC 355

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TAAG AVLKVI+K++LQ NA VVGSYLKERLTALKDKY +IGDVRGRG +LGVE VTDR+
Sbjct: 356 TAAGLAVLKVIEKEQLQQNAFVVGSYLKERLTALKDKYELIGDVRGRGLMLGVELVTDRE 415

Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           LKTPAK ETL++MD+MKE+GVL+GKGG+YGNVFRITPPLCFTKEDAD++ D MD +LS+M
Sbjct: 416 LKTPAKGETLHVMDQMKELGVLIGKGGYYGNVFRITPPLCFTKEDADFVADAMDLTLSRM 475

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
TAIR|locus:2097623	481	PYD4 "PYRIMIDINE 4" [Arabidops	0.997	0.995	0.759	6.9e-205
TAIR|locus:2135237	476	AGT2 "alanine:glyoxylate amino	0.912	0.920	0.659	2e-166
FB|FBgn0037186	518	CG11241 [Drosophila melanogast	0.497	0.461	0.493	3.8e-114
ZFIN|ZDB-GENE-050913-100	517	agxt2 "alanine-glyoxylate amin	0.502	0.466	0.516	7.8e-114
UNIPROTKB|F1NQJ1	479	AGXT2 "Uncharacterized protein	0.518	0.519	0.486	3.9e-108
WB|WBGene00020382	444	T09B4.8 [Caenorhabditis elegan	0.5	0.540	0.522	9.4e-105
UNIPROTKB|E2QZD7	514	AGXT2 "Uncharacterized protein	0.502	0.468	0.477	1.2e-104
UNIPROTKB|Q17QF0	514	AGXT2 "Alanine--glyoxylate ami	0.502	0.468	0.473	9.6e-101
UNIPROTKB|F1MLG7	514	AGXT2 "Alanine--glyoxylate ami	0.502	0.468	0.473	2e-100
UNIPROTKB|Q9BYV1	514	AGXT2 "Alanine--glyoxylate ami	0.506	0.472	0.457	5.3e-100

TAIR|locus:2097623 PYD4 "PYRIMIDINE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1982 (702.8 bits), Expect = 6.9e-205, P = 6.9e-205
 Identities = 366/482 (75%), Positives = 426/482 (88%)

Query:     1 MQRFAARRVLSETNSLRLPQRCFFSQLAQKEESSL--SEHETFLPRMPPFDYSPPPYDGP 58
             M++  A   L + N+  LP R   SQ A +  SS+  +E ET LP+MPPF+YSPPPYDGP
Sbjct:     1 MRKLTAVNSLLKRNNYLLP-RHGSSQTAAQRTSSVRETETETKLPKMPPFNYSPPPYDGP 59

Query:    59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
             S  EI+AKR+ FLSP+LFH Y+ PLN+V+ KMQY+FDENGRRYLDAFGGIATV CGHCHP
Sbjct:    60 STAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYLDAFGGIATVSCGHCHP 119

Query:   119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178
              VV+S+V Q+K I HST+LYLNH I+DFAEAL S +PG+LKVVFFTNSGTEANELA+MMA
Sbjct:   120 EVVNSVVKQLKLINHSTILYLNHTISDFAEALVSTLPGDLKVVFFTNSGTEANELAMMMA 179

Query:   179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM 238
             RLYTGCNDI+SLRN+YHGNAA TMGATAQSNWKFNVVQ+GVHHA+NPDPYRG+FG+DGE 
Sbjct:   180 RLYTGCNDIVSLRNSYHGNAAATMGATAQSNWKFNVVQSGVHHAINPDPYRGIFGSDGEK 239

Query:   239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298
             YA DV DLI FGTSG VAGF+ ESIQGVGGI+ELAPGYLPA Y  ++KAGG+CIADEVQ+
Sbjct:   240 YASDVHDLIQFGTSGQVAGFIGESIQGVGGIVELAPGYLPAAYDIVRKAGGVCIADEVQS 299

Query:   299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358
             GFARTG+HFWGF++HGV+PDIVTMAKGIGNGIPLGAVVTTPEIA VL+RR+YFNTFGGNP
Sbjct:   300 GFARTGTHFWGFQSHGVIPDIVTMAKGIGNGIPLGAVVTTPEIAGVLSRRSYFNTFGGNP 359

Query:   359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
             +CTAAGHAVL+V+ ++KLQ NA++VGS+LK RLT LK+KY +IGDVRGRG +LGVEFV D
Sbjct:   360 MCTAAGHAVLRVLHEEKLQENANLVGSHLKRRLTLLKNKYELIGDVRGRGLMLGVEFVKD 419

Query:   419 RQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
             R LKTPAKAETL++MD+MKEMGVLVGKGGFYGNVFRITPPLCFT  DAD+LVDVMD+++S
Sbjct:   420 RDLKTPAKAETLHLMDQMKEMGVLVGKGGFYGNVFRITPPLCFTLSDADFLVDVMDHAMS 479

Query:   479 KM 480
             KM
Sbjct:   480 KM 481

GO:0003824 "catalytic activity" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0007568 "aging" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2135237 AGT2 "alanine:glyoxylate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1619 (575.0 bits), Expect = 2.0e-166, P = 2.0e-166
 Identities = 289/438 (65%), Positives = 364/438 (83%)

Query:    43 PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYL 102
             P +PPF + P PY GPSADE+L KRK FL PSLFH Y KPLN+V+GKMQYL+DE+GRRYL
Sbjct:    39 PHIPPFVHQPRPYKGPSADEVLQKRKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGRRYL 98

Query:   103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVF 162
             DAF GI TV CGHCHP ++++I  Q K +QH+T +YL+HAI DFAEALA+KMPGNLKVV+
Sbjct:    99 DAFAGIVTVSCGHCHPDILNAITEQSKLLQHATTIYLHHAIGDFAEALAAKMPGNLKVVY 158

Query:   163 FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA 222
             F NSG+EANELA+MMARLYTG  ++ISLRNAYHG ++ T+G TA + WK+ + Q  +HH 
Sbjct:   159 FVNSGSEANELAMMMARLYTGSLEMISLRNAYHGGSSNTIGLTALNTWKYPLPQGEIHHV 218

Query:   223 LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282
             +NPDPYRGVFG+DG +YAKDV D I++GTSG VAGF++E+IQGVGG +ELAPGYL +VY+
Sbjct:   219 VNPDPYRGVFGSDGSLYAKDVHDHIEYGTSGKVAGFIAETIQGVGGAVELAPGYLKSVYE 278

Query:   283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIA 342
              ++ AGG+CIADEVQ GF RTGSH+WGF+   VVPDIVTMAKGIGNG+PLGAVVTTPEIA
Sbjct:   279 IVRNAGGVCIADEVQTGFGRTGSHYWGFQTQDVVPDIVTMAKGIGNGLPLGAVVTTPEIA 338

Query:   343 EVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402
              VL  +  FNTFGGNPVC+A G AVL VI K+K Q +   VGS+L +RL  ++ ++ IIG
Sbjct:   339 SVLASKILFNTFGGNPVCSAGGLAVLNVIDKEKRQEHCAEVGSHLIQRLKDVQKRHDIIG 398

Query:   403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT 462
             DVRGRG ++G+E V+DR+ KTPAKAET  + ++++E+G+LVGKGG +GNVFRI PP+CFT
Sbjct:   399 DVRGRGLMVGIELVSDRKDKTPAKAETSVLFEQLRELGILVGKGGLHGNVFRIKPPMCFT 458

Query:   463 KEDADYLVDVMDYSLSKM 480
             K+DAD+LVD +DYS+S++
Sbjct:   459 KDDADFLVDALDYSISRL 476

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS;IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019544 "arginine catabolic process to glutamate" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

FB|FBgn0037186 CG11241 [Drosophila melanogaster (taxid:7227)]

 Score = 630 (226.8 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
 Identities = 119/241 (49%), Positives = 166/241 (68%)

Query:   236 GEMYAKDVQDLIDFGTS-GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294
             G+ Y  ++++   +    G VA   +ESIQGVGG ++   GYL      ++  GGL +AD
Sbjct:   257 GDAYYNELEETFKYSLPRGKVAAMFAESIQGVGGTVQFPKGYLKRAAALVRANGGLFVAD 316

Query:   295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTF 354
             EVQ GF RTG HFWGFE+H  VPDIVTMAKGIGNG PL AVVTTPEIA  L++  +FNT+
Sbjct:   317 EVQTGFGRTGEHFWGFESHDYVPDIVTMAKGIGNGFPLAAVVTTPEIAASLSQALHFNTY 376

Query:   355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
             GGNP+ +A G AVL VI++++LQ N+  VG+Y  + L  L+ ++ IIGDVRG+G ++GVE
Sbjct:   377 GGNPMASAVGIAVLDVIEEEQLQRNSLEVGTYFLKGLAELQQRFEIIGDVRGKGLMIGVE 436

Query:   415 FVTDRQLKTP-AKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
              V +R+ +TP A    L I +K K+ GVL+G+GG +GNV  + PPLC   ED ++ ++ +
Sbjct:   437 LVGNREKRTPLATPHVLDIWEKCKDQGVLLGRGGLHGNVLSMRPPLCLCAEDVEFALETL 496

Query:   474 D 474
             +
Sbjct:   497 E 497

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

ZFIN|ZDB-GENE-050913-100 agxt2 "alanine-glyoxylate aminotransferase 2" [Danio rerio (taxid:7955)]

 Score = 687 (246.9 bits), Expect = 7.8e-114, Sum P(2) = 7.8e-114
 Identities = 125/242 (51%), Positives = 168/242 (69%)

Query:   237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
             +MY K+++++ D      +A F +E IQGVGG ++    YL   Y+ +++ GG+CIADEV
Sbjct:   269 DMYIKELKEVFDTTVPSRIAAFFTEPIQGVGGAVQYPKNYLKETYQLVREKGGICIADEV 328

Query:   297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGG 356
             Q GF RTGSHFWGFE H V+PD+VTMAKGI NGIP+GAVVTT EIA    +  +FNTFGG
Sbjct:   329 QTGFGRTGSHFWGFEGHNVIPDMVTMAKGIANGIPMGAVVTTAEIARSFAKGVHFNTFGG 388

Query:   357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
             NP+  A   +VL  I++DK+Q N+  +G+YL   L  L+DKY IIGDVRG+G  +GVE V
Sbjct:   389 NPLACAIASSVLDTIKEDKMQENSAELGTYLLTELAKLRDKYEIIGDVRGKGLQIGVEMV 448

Query:   417 TDRQLKTPAKAETLY-IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY 475
              D+  +TP   E +  I +  K+MGVL+GKGG YG  FRI PP+C TK DAD+ + V + 
Sbjct:   449 KDKASRTPLPQEAMNEIFEDTKDMGVLIGKGGLYGQTFRIKPPMCITKADADFFLSVFNQ 508

Query:   476 SL 477
             ++
Sbjct:   509 AV 510

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NQJ1 AGXT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 674 (242.3 bits), Expect = 3.9e-108, Sum P(2) = 3.9e-108
 Identities = 122/251 (48%), Positives = 173/251 (68%)

Query:   230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG 289
             GV  A+ E Y +  +D ++      +AGF++E IQG+ G ++   G+L   Y+ +++ GG
Sbjct:   224 GVCHAN-EQYIEQFKDTLNTSVPKTIAGFIAEPIQGINGAVQYPKGFLKEAYRLVRERGG 282

Query:   290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN 349
             +CIADEVQ GF RTGSHFWGF+ H VVPDI+T+AKGIGNG P+ AVVTT EIA  L +  
Sbjct:   283 VCIADEVQTGFGRTGSHFWGFQTHDVVPDIITLAKGIGNGFPMAAVVTTKEIANSLAQNL 342

Query:   350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF 409
             +FNTFGGNP+    G AVL  I++D LQ N+  VG+Y+   L  L+DK+ I+GDVRG+G 
Sbjct:   343 HFNTFGGNPMACVVGSAVLDAIEEDSLQKNSKDVGTYMLLELAKLRDKFEIVGDVRGKGL 402

Query:   410 LLGVEFVTDRQLKTPAKAETL-YIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADY 468
             ++G+E VTD+  + P  AE +  I +  K+MGVL+G+GG Y   FRI PP+C T++D D+
Sbjct:   403 MIGIEMVTDKDSRHPLPAEEINQIWEDCKDMGVLIGRGGLYNQTFRIKPPMCITRKDVDF 462

Query:   469 LVDVMDYSLSK 479
              V+V+  +L +
Sbjct:   463 AVEVIHTALER 473

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

WB|WBGene00020382 T09B4.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 661 (237.7 bits), Expect = 9.4e-105, Sum P(2) = 9.4e-105
 Identities = 128/245 (52%), Positives = 170/245 (69%)

Query:   237 EMYAKDVQDLI--DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294
             + Y +   D++  DF  S   A FL ESIQGVGG ++   GYL   Y+S++K GGL IAD
Sbjct:   201 DKYIEQFDDMLLHDFSHSSGPAAFLIESIQGVGGTVQYPHGYLKKSYESVQKRGGLAIAD 260

Query:   295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTF 354
             EVQ GF R GSHFWGFE+   +PD+VTMAKGIGNG PLGAVVT+ EIA+   +  YFNT+
Sbjct:   261 EVQTGFGRLGSHFWGFESQDALPDMVTMAKGIGNGFPLGAVVTSKEIADSFNKSLYFNTY 320

Query:   355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
             GGNP+ +  G AVL+VI+++KLQ N+ VVG Y  ++L A+ D    IGDVRG+G ++GVE
Sbjct:   321 GGNPLASVVGKAVLEVIEEEKLQENSAVVGDYFLKQLAAIDD--ATIGDVRGKGLMIGVE 378

Query:   415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD 474
              + D Q K  A A+T  I +  K  G+L+GKGG +GNV RI PP+C TK+D D+ VD++ 
Sbjct:   379 LI-DEQGKPLAAAKTAAIFEDTKNQGLLIGKGGIHGNVLRIKPPMCITKKDVDFAVDIIA 437

Query:   475 YSLSK 479
              S+ +
Sbjct:   438 KSIKQ 442

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|E2QZD7 AGXT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 649 (233.5 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
 Identities = 116/243 (47%), Positives = 167/243 (68%)

Query:   237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
             + Y +  +D ++   +  +AGF +E IQGV G+++   G+L   ++ +++ GGLCIADEV
Sbjct:   263 DQYIEQFKDTLNSSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGLCIADEV 322

Query:   297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-YFNTFG 355
             Q GF R GSHFWGF+ HG++PDIVTMAKGIGNG P+ AVVTTPEIA  L +   +FNTFG
Sbjct:   323 QTGFGRLGSHFWGFQTHGILPDIVTMAKGIGNGFPMAAVVTTPEIANSLAKSVLHFNTFG 382

Query:   356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
             GNP+  A G AVL+VI+++ LQ N+  VG+Y+ ++   L+D++ I+GDVRG+G ++G+E 
Sbjct:   383 GNPIACAIGSAVLEVIKEENLQENSQEVGTYMLQKFAELRDEFEIVGDVRGKGLMIGIEM 442

Query:   416 VTDRQLKTPAKAETLY-IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD 474
             V D+  + P   E +  I D  K MG+L+GKGG +   FRI P +C TK D  + V+V  
Sbjct:   443 VKDKMSRQPLPREEVNEIHDNCKRMGLLIGKGGIFAQTFRIAPSMCITKPDVKFAVEVFR 502

Query:   475 YSL 477
              +L
Sbjct:   503 SAL 505

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q17QF0 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 638 (229.6 bits), Expect = 9.6e-101, Sum P(2) = 9.6e-101
 Identities = 115/243 (47%), Positives = 169/243 (69%)

Query:   237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
             + Y +  +D +    +  +AGF +E IQGV G+++   G+L   ++ +++ GG+CIADEV
Sbjct:   263 DQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEV 322

Query:   297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-YFNTFG 355
             Q GF R GSHFWGF+ H V+PDIVTMAKGIGNG P+ AVVTTP+IA+ LT+R  +FNTFG
Sbjct:   323 QTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPDIAKSLTKRMLHFNTFG 382

Query:   356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
             GNP+  A G AVL+VI+++ LQ N+  VG+Y+  +L  L+D++ I+GDVRG+G ++G+E 
Sbjct:   383 GNPMACAVGSAVLEVIKEENLQENSQEVGTYMLLKLAKLRDEFEIVGDVRGKGLMIGIEM 442

Query:   416 VTDRQLKTPAKAETL-YIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD 474
             V D++ + P   E +  I    K MG+L+G+GG +   FRI P +C TK + D+ V+V  
Sbjct:   443 VKDKESRQPLPREEVNQIHHDCKCMGLLIGRGGLFSQTFRIAPSMCITKPEVDFAVEVFR 502

Query:   475 YSL 477
              +L
Sbjct:   503 SAL 505

GO:0005739 "mitochondrion" evidence=IEA

GO:0047305 "(R)-3-amino-2-methylpropionate-pyruvate transaminase activity" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1MLG7 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 635 (228.6 bits), Expect = 2.0e-100, Sum P(2) = 2.0e-100
 Identities = 115/243 (47%), Positives = 168/243 (69%)

Query:   237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
             + Y +  +D +    +  +AGF +E IQGV G+++   G+L   ++ +++ GG+CIADEV
Sbjct:   263 DQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEV 322

Query:   297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-YFNTFG 355
             Q GF R GSHFWGF+ H V+PDIVTMAKGIGNG P+ AVVTTP+IA+ LT+R  +FNTFG
Sbjct:   323 QTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPDIAKSLTKRMLHFNTFG 382

Query:   356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
             GNP+  A G AVL+VI+++ LQ N+  VG+Y+  +L  L+D++ I+GDVRG+G ++G+E 
Sbjct:   383 GNPMACAVGSAVLEVIKEENLQENSQEVGTYMLLKLAKLRDEFEIVGDVRGKGLMIGIEM 442

Query:   416 VTDRQLKTPAKAETL-YIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD 474
             V D++   P   E +  I    K MG+L+G+GG +   FRI P +C TK + D+ V+V  
Sbjct:   443 VKDKESHQPLPREEVNQIHHDCKCMGLLIGRGGLFSQTFRIAPSMCITKPEVDFAVEVFR 502

Query:   475 YSL 477
              +L
Sbjct:   503 SAL 505

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q9BYV1 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 617 (222.3 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
 Identities = 112/245 (45%), Positives = 165/245 (67%)

Query:   237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
             + Y +  +D +    +  +AGF +E IQGV G+++   G+L   ++ ++  GG+CIADEV
Sbjct:   263 DQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEV 322

Query:   297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-RNYFNTFG 355
             Q GF R GSHFWGF+ H V+PDIVTMAKGIGNG P+ AV+TTPEIA+ L +   +FNTFG
Sbjct:   323 QTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFG 382

Query:   356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
             GNP+  A G AVL+VI+++ LQ N+  VG+Y+  +   L+D++ I+GDVRG+G ++G+E 
Sbjct:   383 GNPMACAIGSAVLEVIKEENLQENSQEVGTYMLLKFAKLRDEFEIVGDVRGKGLMIGIEM 442

Query:   416 VTDRQLKTPAKAETL-YIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD 474
             V D+    P   E +  I +  K MG+LVG+G  +   FRI P +C TK + D+ V+V  
Sbjct:   443 VQDKISCRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFRIAPSMCITKPEVDFAVEVFR 502

Query:   475 YSLSK 479
              +L++
Sbjct:   503 SALTQ 507

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0047305 "(R)-3-amino-2-methylpropionate-pyruvate transaminase activity" evidence=IEA

GO:0016223 "beta-alanine-pyruvate transaminase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IDA;TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046135 "pyrimidine nucleoside catabolic process" evidence=TAS

GO:0046487 "glyoxylate metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IDA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IDA

GO:0009436 "glyoxylate catabolic process" evidence=IDA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SR86	AGT23_ARATH	2, ., 6, ., 1, ., 4, 4	0.7593	0.9979	0.9958	yes	no
Q3UEG6	AGT2_MOUSE	2, ., 6, ., 1, ., 4, 0	0.4257	0.9020	0.8440	yes	no
Q5RFA3	AGT2_PONAB	2, ., 6, ., 1, ., 4, 0	0.4199	0.9104	0.8501	yes	no
P33189	YHXA_BACSU	2, ., 6, ., -, ., -	0.3496	0.8041	0.8577	yes	no
Q64565	AGT2_RAT	2, ., 6, ., 1, ., 4, 0	0.4173	0.9062	0.8496	yes	no
Q9BYV1	AGT2_HUMAN	2, ., 6, ., 1, ., 4, 0	0.4177	0.9104	0.8501	yes	no
P44951	DAT_HAEIN	2, ., 6, ., 1, ., 7, 6	0.3280	0.8583	0.9074	yes	no
P30268	Y2045_BACPE	2, ., 6, ., -, ., -	0.3364	0.8541	0.9213	yes	no
Q9US34	YFZ7_SCHPO	2, ., 6, ., -, ., -	0.3333	0.8166	0.875	yes	no
Q94AL9	AGT22_ARATH	2, ., 6, ., 1, ., 4, 4	0.7479	0.9937	1.0	no	no
O27392	ARGD_METTH	2, ., 6, ., 1, ., 1, 1	0.3466	0.8020	0.9871	yes	no
Q17QF0	AGT2_BOVIN	2, ., 6, ., 1, ., 4, 0	0.4044	0.9791	0.9143	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.983
4th Layer	2.6.1.44	0.979
4th Layer	2.6.1.40	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XVI0476	hypothetical protein (479 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_I1607	serine--glyoxylate transaminase (EC-2.6.1.45) (401 aa)						•	•		0.905
	estExt_Genewise1_v1.C_LG_IX3694	serine--glyoxylate transaminase (EC-2.6.1.45) (401 aa)						•	•		0.905
	gdcP1	precursor of carboxylase p-protein 1, glycine decarboxylase complex (EC-1.4.4.2) (1061 aa)				•		•			0.902
	SHMT2	precursor of transferase serine hydroxymethyltransferase 2 (EC-2.1.2.1); Interconversion of ser [...] (518 aa)						•			0.899
	SHMT3	precursor of transferase serine hydroxymethyltransferase 3 (EC-2.1.2.1); Interconversion of ser [...] (516 aa)						•			0.899
	SHMT5	serine hydroxymethyltransferase 5 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (552 aa)						•			0.899
	SHMT4	serine hydroxymethyltransferase 4 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (555 aa)						•			0.899
	SHMT7	precursor of transferase serine hydroxymethyltransferase 7 (EC-2.1.2.1); Interconversion of ser [...] (521 aa)						•			0.899
	SHMT1	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)						•			0.899
	SHMT6	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	480
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	1e-164
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	1e-153
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	1e-148
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	1e-128
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	1e-119
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	1e-114
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	1e-104
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	1e-102
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	1e-101
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	1e-93
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	4e-91
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	7e-84
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	2e-81
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	2e-81
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	3e-81
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	4e-80
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	3e-79
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	8e-77
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	8e-77
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	2e-76
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	1e-73
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	9e-73
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	1e-71
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	6e-71
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	5e-69
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	3e-68
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	2e-67
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	1e-65
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	2e-64
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	1e-63
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	2e-63
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	3e-62
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	2e-61
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	8e-61
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	1e-60
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	2e-60
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	2e-60
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	4e-60
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	7e-60
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	7e-60
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	3e-59
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	2e-58
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	3e-58
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	4e-58
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	1e-57
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	2e-57
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	4e-56
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	5e-56
PRK04013	364	PRK04013, argD, acetylornithine/acetyl-lysine amin	4e-55
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	3e-54
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	5e-53
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	1e-51
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	6e-51
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	9e-51
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	2e-50
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	2e-49
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	1e-48
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	7e-48
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	9e-45
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	1e-44
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	6e-44
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	5e-41
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	2e-39
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	2e-37
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	3e-36
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	1e-33
PRK12389	428	PRK12389, PRK12389, glutamate-1-semialdehyde amino	3e-32
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	1e-31
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	2e-29
PRK00062	426	PRK00062, PRK00062, glutamate-1-semialdehyde amino	5e-28
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	1e-27
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	1e-26
PRK06943	453	PRK06943, PRK06943, adenosylmethionine--8-amino-7-	5e-26
PRK07986	428	PRK07986, PRK07986, adenosylmethionine--8-amino-7-	5e-25
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	8e-23
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	2e-21
PRK00615	433	PRK00615, PRK00615, glutamate-1-semialdehyde amino	3e-20
PLN02482	474	PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a	9e-19
PRK06209	431	PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a	3e-12
PLN02974	817	PLN02974, PLN02974, adenosylmethionine-8-amino-7-o	3e-09
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	4e-09
PRK07046	453	PRK07046, PRK07046, aminotransferase; Validated	4e-07
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	2e-05
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	2e-04

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  470 bits (1211), Expect = e-164
 Identities = 175/433 (40%), Positives = 242/433 (55%), Gaps = 14/433 (3%)

Query: 56  DGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
            GP A E++ +R+  L+ S +  +  PL +V  +  YL+D +G  YLD   GIA +  GH
Sbjct: 14  PGPKALELIERREEALARS-YGRFRFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGH 72

Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGN-LKVVFFTNSGTEANEL 173
            HP VV+++  Q+ ++ H+    L +    + AE L +  PG+ LK VFF NSG EA E 
Sbjct: 73  NHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEA 132

Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK---FNVVQTGVHHALNPDPYRG 230
           AI +AR YTG   +I+   A+HG   G +  T         F  +  GV+H   P+PYR 
Sbjct: 133 AIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRC 192

Query: 231 VFGADGEMYAKDVQDLI-----DFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
            FG  GE    D  + I     D       VA  + E IQG GGII    G+L A+ K  
Sbjct: 193 PFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLC 252

Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           ++ G L IADEVQ GF RTG   + FE  GV PDIVT+AK +G G+PL AVV   EI + 
Sbjct: 253 REHGILLIADEVQTGFGRTG-KMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMDW 311

Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                +  TFGGNPV  AA  AVL VI+++ L   A  +G YL++RL  L++K+ +IGDV
Sbjct: 312 PPGG-HGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDV 370

Query: 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE 464
           RG G ++GVE V DR  K P       I+ +  E G+L+   G +GNV RI PPL  + E
Sbjct: 371 RGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDE 430

Query: 465 DADYLVDVMDYSL 477
           + D  +D+++ +L
Sbjct: 431 ELDEGLDILEEAL 443

Length = 447

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  462 bits (1190), Expect = e-153
 Identities = 203/437 (46%), Positives = 256/437 (58%), Gaps = 22/437 (5%)

Query: 55   YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG 114
              G    EIL +RK  L P+L   YS P+  V G   +L D  GR YLD F  +  V  G
Sbjct: 580  QSGRDKAEILRERKEHLLPNLSISYSDPIKFVRGWGVWLIDNRGRAYLDCFNNVCHV--G 637

Query: 115  HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA 174
            H HP VV +   Q  R+  +T  YL+ AI  +AE L + +P  L V FF NSG+EAN LA
Sbjct: 638  HAHPRVVAAAARQAARLNTNT-RYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLA 696

Query: 175  IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG-------VHHALNPDP 227
            + +AR +TG  D I L +AYHG    T      S +KFN  + G       V  A  PD 
Sbjct: 697  LRLARAHTGQRDAIVLDHAYHGT---TTELIDLSPYKFN--RKGGKGRPDHVEVAEVPDS 751

Query: 228  YRGVFG----ADGEMYAKDVQDLID-FGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVY 281
            YRG         G  +A+ V + I      G   A F++ESI  V G I L  GYL  VY
Sbjct: 752  YRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVY 811

Query: 282  KSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEI 341
              ++ AGG+CIADEVQ GF R GSH+W FE  GVVPDIVTM K IGNG P+GAVVTT EI
Sbjct: 812  AMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREI 871

Query: 342  AEVLTR-RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI 400
            A+       YFNTFGGNPV  A G AVL +I+ + LQ NA  +G+YL   L  L+D++ I
Sbjct: 872  ADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDI 931

Query: 401  IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLC 460
            IGDVRG G  LG+E VTDR+ K PA A   Y+ +  +E G+L+G  G + NV +I PPL 
Sbjct: 932  IGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLI 991

Query: 461  FTKEDADYLVDVMDYSL 477
            F++ DAD+L++V+D  L
Sbjct: 992  FSRADADHLLEVLDDVL 1008

Length = 1013

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score =  429 bits (1105), Expect = e-148
 Identities = 164/411 (39%), Positives = 226/411 (54%), Gaps = 9/411 (2%)

Query: 67  RKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVN 126
           RK          Y  PL +V  +  YL+D +G RYLD   GI  +  GH HP VV+++  
Sbjct: 6   RKVLWHGYTVRPY--PLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKE 63

Query: 127 QIKRIQHSTVLYLNHAIAD-FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN 185
           Q+ ++ H ++ +  +  A   AE L +  P  L  VFF NSGTEA E A+ +AR YTG  
Sbjct: 64  QLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRK 123

Query: 186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245
            IIS   AYHG   G +  T    ++             P PYR    A+     + +++
Sbjct: 124 KIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEE 183

Query: 246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS 305
            ++      VA  + E IQG GG+I   PGYL A+ +  +K G L IADEVQ GF RTG 
Sbjct: 184 ALEEH-PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK 242

Query: 306 HFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAA 363
            F  FE  GV PDIVT+ KG+G G+PLGAV+   EI +        +  TFGGNP+  AA
Sbjct: 243 MFA-FEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAA 301

Query: 364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT 423
             AVL+V++++ L  NA  +G YL+ERL  L +K+ ++GDVRGRG ++G+E V DR  K 
Sbjct: 302 ALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKP 361

Query: 424 PAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD 474
           P K     I+    E G+L+   G  GNV R+ PPL  T+E+ D  +D +D
Sbjct: 362 PDKELAAKIIKAALERGLLLRPSG--GNVIRLLPPLIITEEEIDEGLDALD 410

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score =  395 bits (1017), Expect = e-128
 Identities = 190/448 (42%), Positives = 256/448 (57%), Gaps = 32/448 (7%)

Query: 48  FDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGG 107
                PP   P A  +LA+R    +    H Y+ P  +  G   +LFD  GR YLD    
Sbjct: 537 LPCDAPP---PDAAALLARRDASFARVQKHYYADPPQIERGWRHHLFDMAGRSYLDMVNN 593

Query: 108 IATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNS 166
           +  +  GH HP +  +   Q   +  +S   Y   A+A+F+E LA+  P  L  VF  NS
Sbjct: 594 VTVL--GHGHPRLAAAAARQWSLLNTNSRFHY--AAVAEFSERLAALAPDGLDTVFLVNS 649

Query: 167 GTEANELAIMMARLYTGCNDIISLRNAYHG-----NAAGTMGA------TAQSNWKFNVV 215
           G+EAN+LAI +A   +G  D++S+  AYHG     +A  T  A        + +W     
Sbjct: 650 GSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDW----- 704

Query: 216 QTGVHHALNPDPYRGVF-GAD-GEMYAKDV-QDLIDFGTSGH-VAGFLSESIQGVGGIIE 271
              VH   +P+ YRG F GAD    Y +DV   L +   SG  +AGF+ E + G  G I 
Sbjct: 705 ---VHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIA 761

Query: 272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIP 331
           L PGYL  VY +++  GG+CIADEVQ G+ R G +FWGFE  GVVPDI+TMAKG+GNG P
Sbjct: 762 LPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHP 821

Query: 332 LGAVVTTPEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKER 390
           LGAV+T  EIAE L    Y F++ GG+PV    G AVL V++++KLQ NA  VG +LK R
Sbjct: 822 LGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKAR 881

Query: 391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG 450
           L AL D++ +IG V G G  LGVE V DRQ   PA  ET  I D++ E+GV++   G + 
Sbjct: 882 LEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHL 941

Query: 451 NVFRITPPLCFTKEDADYLVDVMDYSLS 478
           N+ +I PPLC  +E AD+ VD++D  L+
Sbjct: 942 NILKIKPPLCLDRESADFFVDMLDRVLT 969

Length = 972

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score =  354 bits (911), Expect = e-119
 Identities = 150/412 (36%), Positives = 223/412 (54%), Gaps = 35/412 (8%)

Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
           L   Y + P+ +V G+  Y++D+ GR YLD   GIA    GHCHP +V+++  Q +++ H
Sbjct: 17  LMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH 76

Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC---NDIISL 190
            + L+ N   A+ AE L    P     VFF NSG EANE A+ +AR YTG    + II+ 
Sbjct: 77  VSNLFYNEPQAELAEKLVELSPF-ADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAF 135

Query: 191 RNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248
            N++HG   G + AT Q  ++  F  +  G  H     P+      D E     ++  ID
Sbjct: 136 ENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHV----PF-----NDIE----ALEAAID 182

Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
                  A  + E IQG GG+I   P +L A+ +   + G L I DEVQ G  RTG   +
Sbjct: 183 ----EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG-KLF 237

Query: 309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
            +E +GV PDI+T+AK +G G P+GA++ T EIA   T  ++ +TFGGNP+  A   AVL
Sbjct: 238 AYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVL 297

Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAE 428
           +V+ ++ L  N    G YL +RL  LK +Y ++ +VRGRG ++G+E     + +      
Sbjct: 298 EVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRAR------ 351

Query: 429 TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
              I+  ++E GVLV   G   NV R  PPL  T+E+ D  +D ++ +L+  
Sbjct: 352 --DIVRALREEGVLVLPAG--PNVIRFLPPLVITEEEIDEALDALERALAAA 399

Length = 404

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score =  342 bits (879), Expect = e-114
 Identities = 147/417 (35%), Positives = 221/417 (52%), Gaps = 40/417 (9%)

Query: 72  SPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130
              L + Y + P+  V G+   L+D++G+ YLD   GIA    GHCHP +V++I  Q  +
Sbjct: 11  KKYLMNTYGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAK 70

Query: 131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND---- 186
           + H++ LY      + AE L       +  VFF NSG EANE AI +AR Y         
Sbjct: 71  LIHTSNLYYIEPQEELAEKLVEL--SGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKP 128

Query: 187 -IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK--DV 243
            II+  N++HG    T+ AT Q        Q G       +P       +G +Y    D+
Sbjct: 129 EIITAENSFHGRTLATLSATGQPK-----YQEGF------EPL-----VEGFIYVPFNDI 172

Query: 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART 303
           + L     +   A  + E IQG GG+      YL A+ +   + G L I DEVQ G  RT
Sbjct: 173 EALKA-AITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRT 231

Query: 304 GSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA 363
           G   + ++ +G+ PDI+T+AKG+G G+P+GAV+   ++A+V T  ++ +TFGGNP+  AA
Sbjct: 232 GK-LFAYQHYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAA 290

Query: 364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT 423
             AV+++I+++ L  NA  VG YL+ +L  L +KY  I +VRG G ++G+E      L  
Sbjct: 291 ALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIE------LDR 344

Query: 424 PAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           PA      I+ K  E G+L+   G   NV R+ PPL  +KE+ D  VD ++  L ++
Sbjct: 345 PAA----EIVKKALEKGLLINVTG--DNVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395

Length = 396

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score =  317 bits (814), Expect = e-104
 Identities = 167/455 (36%), Positives = 235/455 (51%), Gaps = 32/455 (7%)

Query: 41  FLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRR 100
            +PR P      P   GP A EI+ + + +L+ S    Y  PL +  G+  ++ D +G  
Sbjct: 1   DMPRRPRIVVELP---GPKAREIIERDEKYLAQSTRRWY--PLVIERGEGVWVEDVDGNV 55

Query: 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLNHAIADFAEALASKMPGNL- 158
           YLD   GIA    GH HP VV ++  Q ++  H S   +      + AE L    PG   
Sbjct: 56  YLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFE 115

Query: 159 KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK----FNV 214
           K VFFTNSGTE+NE AI +AR +TG   II+   A+HG   G++  TA S       F  
Sbjct: 116 KKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTA-SKPVQRKGFFP 174

Query: 215 VQTGVHHALNPDPYRGVFGA-DGEMYAKDVQDLIDFGTSGH------VAGFLSESIQGVG 267
           +  GV H   P+PYR  +G  + E     V D I+            VA  + E IQG G
Sbjct: 175 LMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEG 234

Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
           G +     +   + K   K G L I DEVQ G  RTG   +  E  GV PDI+T+AK I 
Sbjct: 235 GYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEHFGVEPDIITLAKAIA 293

Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            G+PLGAV+   E+   L   ++ NTFGGNPV  AA  A L+ + ++ L  NA  +G YL
Sbjct: 294 GGLPLGAVIGRAELMF-LPPGSHANTFGGNPVAAAAALATLEEL-EEGLLENAQKLGEYL 351

Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLV---G 444
           ++ L  LK+KY  IGDVRG G ++GVE V DR  K P       ++ +  + G+L+   G
Sbjct: 352 RKELKELKEKYEFIGDVRGLGLMIGVELVKDR--KEPDPKLRDKVLYEAFKRGLLLLGAG 409

Query: 445 KGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
           K     +  RI PPL  T+E+AD  +++++ ++ +
Sbjct: 410 K-----SAIRIIPPLIITEEEADIGLEILEEAIKE 439

Length = 441

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score =  311 bits (800), Expect = e-102
 Identities = 143/429 (33%), Positives = 213/429 (49%), Gaps = 34/429 (7%)

Query: 75  LFHLYS-------KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQ 127
           L+H ++       +P  +V  +  YL D +GRRYLD   G+  V  GH  P + ++I  Q
Sbjct: 13  LWHPFTQMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQ 72

Query: 128 IKRIQHSTVLYL-NHAIADFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLY---- 181
           + ++ H       +    + AE LA   P G L  VFFT+SG+EA E A+ MA  Y    
Sbjct: 73  LDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRAR 132

Query: 182 --TGCNDIISLRNAYHGNAAGTMGATAQSNWK---FNVVQTGVHHALNPDPYRGVFGADG 236
                   IS RN YHG+  G M        +   ++ +   V H   P  YR  F  +G
Sbjct: 133 GQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEG 192

Query: 237 EM----YAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLC 291
           +      A +++ LI       +A F+ E +  G GG++   PGYL  V +   K G L 
Sbjct: 193 DEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILL 252

Query: 292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNY 350
           IADEV  GF RTG  F   E  G+VPDI+ +AKG+  G +PL AV+T+  I E  +  + 
Sbjct: 253 IADEVATGFGRTGKMF-ACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDA 311

Query: 351 -----FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR 405
                 +T+ GNP+  AA  A L +++++ L      +G+YL+  L A    + ++GDVR
Sbjct: 312 GAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVR 371

Query: 406 GRGFLLGVEFVTDRQLKTPAKAETLY-IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE 464
           G G +  +E V D+  KTP +A     +     E G+L+      G+V  + PPL  T+E
Sbjct: 372 GLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL---GDVIYLMPPLIITRE 428

Query: 465 DADYLVDVM 473
           + D LVD +
Sbjct: 429 EIDELVDAL 437

Length = 449

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score =  310 bits (796), Expect = e-101
 Identities = 158/429 (36%), Positives = 227/429 (52%), Gaps = 15/429 (3%)

Query: 62  EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVV 121
           +++ +    L+P+L       L VV G+  Y +  +G+ YLD   GIA    GH HP VV
Sbjct: 7   DLVERYPQLLAPAL-AKDHPNLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVV 65

Query: 122 DSIVNQIKRIQH-STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
            +I  Q  ++ H  + +    +I   AE LA   PG L   FF+NSG EA E A+ +A+ 
Sbjct: 66  QAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKH 125

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKF----NVVQTGVHHALNPDPYRGVFGADG 236
            T    IIS    +HG   G +  T  S  K+      +   V+ A  P   R   G D 
Sbjct: 126 VTKRPYIISFTGCFHGRTLGALSVTT-SKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDP 184

Query: 237 EMYA----KDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC 291
           E+      +D++ L     +   VA  + E + G GG I     +L  + +   + G L 
Sbjct: 185 EVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILL 244

Query: 292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF 351
           I DEVQ GF RTG  F   +  GVVPDI+T+AKGI +G+PL AVV + E+ E     ++ 
Sbjct: 245 IFDEVQTGFGRTGEWFAA-QTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHG 303

Query: 352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL 411
            TFGGNPV  AA  A L+VI+++KL +NA+ +G+Y  ERL  LK+K+ +IGDVRG G ++
Sbjct: 304 TTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMI 363

Query: 412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD 471
           G+E V       P       I+DK  E G+L    G  GNV R+ PPL  TKE+ D  +D
Sbjct: 364 GIEIV--DPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLD 421

Query: 472 VMDYSLSKM 480
           ++D +L++ 
Sbjct: 422 ILDEALTEY 430

Length = 433

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score =  287 bits (736), Expect = 1e-93
 Identities = 135/342 (39%), Positives = 183/342 (53%), Gaps = 14/342 (4%)

Query: 84  NVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLNHA 142
            +   K  +L+D +GRRYLD   GIA V  GHCHP +V ++  Q  ++ H S   +    
Sbjct: 1   FITKAKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEP 60

Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHG 196
               AE LA   PG L  VFF NSG+EANE AI +AR Y      TG   II+    +HG
Sbjct: 61  ALQLAEKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHG 120

Query: 197 NAAGTMGATAQSNWKFNVVQT--GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
              G +  T  S +K     +  GV+    PD             A     LI      +
Sbjct: 121 RTLGALSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEA---LRLIKAVHDDN 177

Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
           +A  + E IQG GG++   PG+L  + +  KK G L IADEVQ GF RTG   +  E +G
Sbjct: 178 IAAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGK-LFACEHYG 236

Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD 374
           V PDI+T+AK +  G+PL AV+ T EI +     ++  TFGGNP+  AA  AVL +I+ +
Sbjct: 237 VTPDIMTLAKALTGGLPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDE 296

Query: 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
            L  NA   G YL++ L AL+DK  +IGDVRG+G ++ +E V
Sbjct: 297 NLLQNAQEKGDYLRKGLLALQDK-PVIGDVRGKGLMIAIEIV 337

Length = 338

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score =  281 bits (722), Expect = 4e-91
 Identities = 146/404 (36%), Positives = 210/404 (51%), Gaps = 40/404 (9%)

Query: 78  LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL 137
               P+ +V GK  Y++D NG+ YLD   GIA    GH HP +V+++  Q++++ H + L
Sbjct: 6   YGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNL 65

Query: 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND-----IISLRN 192
           Y      + AE L          VFF NSG EANE A+ +AR YTG        II+  N
Sbjct: 66  YYTEPQEELAEKLVEHS--GADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFEN 123

Query: 193 AYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
           ++HG   G + AT Q  ++  F  +  G  +A    PY  +         + ++  ID  
Sbjct: 124 SFHGRTMGALSATGQPKYQKGFEPLVPGFSYA----PYNDI---------ESLKKAID-- 168

Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310
                A  + E IQG GG+   +  +L A+ +  K    L I DEVQ G  RTG  F+ +
Sbjct: 169 --DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAY 225

Query: 311 EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV 370
           E +G+ PDI+T+AKG+G G+P+GA +   E+AE  T  ++ +TFGGNP+  AA  AVL+V
Sbjct: 226 EHYGIEPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEV 285

Query: 371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETL 430
           I+K++L  N    G Y KERL  L   Y    +VRG+G +LG+E           +A   
Sbjct: 286 IEKERLLENVKEKGDYFKERLEELGKNY-PNKEVRGKGLMLGIEL----------EAPCK 334

Query: 431 YIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD 474
            I+ K  E G+LV   G    V R  PPL  TKE+ D  V  ++
Sbjct: 335 DIVKKALEKGLLVNCAG--PKVLRFLPPLIITKEEIDEAVSALE 376

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score =  265 bits (679), Expect = 7e-84
 Identities = 144/432 (33%), Positives = 214/432 (49%), Gaps = 18/432 (4%)

Query: 58  PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
               EI+ +    +SP+   +   PL  V  +   ++D  G  Y+D     A    GH +
Sbjct: 1   MKPLEIIERYSKVISPAN-RVTYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNN 59

Query: 118 PYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176
           P VV +I  Q  ++ H T +Y         AE L    PG+   V F  SG++AN+ AI 
Sbjct: 60  PRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIK 119

Query: 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-----TGVHHALNPDPYRGV 231
            AR YT    I+S   +Y+G+  G M  T      F V       + VH+   PD YR  
Sbjct: 120 FARAYTKRRKILSYLRSYYGSTYGAMSLTGLD---FPVRALVGELSDVHYIPYPDCYRCP 176

Query: 232 FGADGEMYAKDVQDLID--FGTSGH---VAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286
           FG +      +  + I   F    +   VA   +E IQG  G+I     Y   + K + +
Sbjct: 177 FGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDE 236

Query: 287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLT 346
            G L + DEVQ+G  RTG  F   E  GV PDI+T+ K +G G+P+ A +   EI + L 
Sbjct: 237 HGILLVVDEVQSGLGRTGKWF-AIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLP 295

Query: 347 RRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG 406
              +  T  GNPV +AA  AV++ I++  L   A  +G+Y K+RL  +K K+ +IGDVRG
Sbjct: 296 PLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRG 355

Query: 407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDA 466
            G ++GV+ V DR+ K  A  E   ++ +  E+G++V    F GNV RI PPL   KE  
Sbjct: 356 IGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTF--FSGNVLRIQPPLTIEKEVL 413

Query: 467 DYLVDVMDYSLS 478
           D  +D+++ ++ 
Sbjct: 414 DEGLDILEEAIE 425

Length = 443

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score =  257 bits (659), Expect = 2e-81
 Identities = 140/397 (35%), Positives = 191/397 (48%), Gaps = 43/397 (10%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +V G+   ++D +G+ YLD  GGIA    GH HP VV+++  Q+  + H + L+   
Sbjct: 26  PLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATE 85

Query: 142 AIADFAEALASKM--PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
                AE L   +  P   + VFF NSG EANE A  +ARL TG   I++    +HG   
Sbjct: 86  PQIALAERLVELLGAPEGGR-VFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGR-- 141

Query: 200 GTMGA---TAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
            TMGA   T Q   +  F  +  GV H     PY      D +  A  V D         
Sbjct: 142 -TMGALALTGQPAKRAPFEPLPGGVEHV----PY-----GDVDALAAAVDD--------D 183

Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
            A    E IQG  G++    GYL A  +   + G L + DEVQ G  RTG  ++  +  G
Sbjct: 184 TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG-AWFAHQHDG 242

Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD 374
           V PD+VT+AKG+G G+P+GA +     A++LT   + +TFGGNPV  AA  AVL  I  +
Sbjct: 243 VTPDVVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASE 302

Query: 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMD 434
            L  NA  +G  L+  + AL     ++  VRGRG LLG+       L  P       +  
Sbjct: 303 GLLENAERLGEQLRAGIEALGHP--LVDHVRGRGLLLGIV------LTAPVAKA---VEA 351

Query: 435 KMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD 471
             +E G LV       +V R+ PPL  T    D  V 
Sbjct: 352 AAREAGFLVNAVA--PDVIRLAPPLIITDAQVDAFVA 386

Length = 398

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score =  259 bits (663), Expect = 2e-81
 Identities = 138/424 (32%), Positives = 218/424 (51%), Gaps = 30/424 (7%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
            + V   +  ++ D  G RYLD   G+  V  G+    + ++   Q+K + +   L  +H
Sbjct: 30  TMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSY-FPLTQSH 88

Query: 142 --AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNA 193
             AI   AE L ++  G   V+FF+NSG+EANE A  +AR Y            IS   A
Sbjct: 89  EPAIK-LAEKL-NEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRA 146

Query: 194 YHGNAAGTMGATAQSN--WKFNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLI 247
           YHGN+ G + AT Q+   +K+  +  G  H   PD YR       ++Y     K++  ++
Sbjct: 147 YHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVM 206

Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
            +  S  +A  + E I   GG++     Y+ AV +  +K G L I+DEV  GF RTG  F
Sbjct: 207 TWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAF 266

Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN---YF---NTFGGNPVC 360
            GF  +GV PDI+TMAKGI +  +PL A     EI E    +    +F   NTFGGNP  
Sbjct: 267 -GFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAA 325

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A     L++++ + L   +  +G  L E+L     ++ ++GD+RG+G L+G+E V D++
Sbjct: 326 CALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKE 385

Query: 421 LKTPAKAETL-YIMDKMKEMGVLVGKGGF----YGNVFRITPPLCFTKEDADYLVDVMDY 475
            K PA  + +  ++   KE G+++GK G     Y NV  ++PPL  + E+  ++V  +  
Sbjct: 386 TKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKT 445

Query: 476 SLSK 479
           +L +
Sbjct: 446 ALER 449

Length = 451

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score =  256 bits (657), Expect = 3e-81
 Identities = 142/408 (34%), Positives = 203/408 (49%), Gaps = 46/408 (11%)

Query: 72  SPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130
              L  +Y++  L    G+  +L DE+G RYLD   GIA    GH HP++V+++  Q ++
Sbjct: 3   ISPLLPVYNRADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEK 62

Query: 131 IQHSTVLYLNHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLY-TGC--- 184
           + H + LY    I +  E LA ++  N     VFFTNSG EA E AI  AR Y  G    
Sbjct: 63  LWHVSNLY---RIPE-QERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHP 118

Query: 185 --NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNP--DPYRGVFGADGEMYA 240
               II+   A+HG    T+ A  Q   K+            P    +  V   D E   
Sbjct: 119 ERYRIITFEGAFHGRTLATIAAGGQE--KY-------LEGFGPLVPGFDQVPFGDIEA-- 167

Query: 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
             ++  I   T    A  L E IQG GGI      +L  + +   + G L I DEVQ G 
Sbjct: 168 --LKAAITPNT----AAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGM 221

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
            RTG   +  E  GV PDI+ +AKGIG G PLGA + T E A+ +T   + +T+GGNP+ 
Sbjct: 222 GRTGK-LFAHEWAGVTPDIMAVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLA 280

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTDR 419
            A G+AVL VI      +N   +G YLK++L  L D++  +I +VRG+G LLG+      
Sbjct: 281 MAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGL------ 334

Query: 420 QLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD 467
           +   P +     ++  +++ G+L    G   NV R+ PPL  T+E+ D
Sbjct: 335 KCVVPNRD----LVQALRDEGLLTVGAG--DNVVRLLPPLIITEEEID 376

Length = 389

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score =  253 bits (648), Expect = 4e-80
 Identities = 143/402 (35%), Positives = 207/402 (51%), Gaps = 37/402 (9%)

Query: 74  SLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVC-CGHCHPYVVDSIVNQIKRI 131
            LF  Y + P+++V GK   + D NG+ YLD   GIA VC  GHCHP V  ++  Q+  I
Sbjct: 3   HLFPTYGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIA-VCNLGHCHPTVTKAVQEQLDDI 61

Query: 132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR 191
            H + L+ N    + A  LA    G+L  VFF NSG EANE A+ +AR +TG + I++  
Sbjct: 62  WHVSNLFTNSLQEEVASLLAENSAGDL--VFFCNSGAEANEAALKLARKHTGKSKIVTFE 119

Query: 192 NAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
            ++HG   GTM AT Q   K  F  +  G  H     P+  +      M           
Sbjct: 120 QSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHV----PFNDIKALKEVM----------- 164

Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
             +  VA  + E +QG GG+I   P +L  V    KK G L I DEVQ G  RTG+ F  
Sbjct: 165 --NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF-A 221

Query: 310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369
           +E  G+ PDIVT+AKG+GNGIP+GA++   E+       ++ +TFGGNP+  AA   VL+
Sbjct: 222 YEQFGLDPDIVTVAKGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQ 281

Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAET 429
           VI++          G Y  ++L    +    + ++RG+G ++G+E               
Sbjct: 282 VIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIE------CTEEVAP-- 333

Query: 430 LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD 471
             ++++++E G+LV   G   NV R+ PPL  TKE+ D  V 
Sbjct: 334 --VIEQLREEGLLVLSAG--PNVIRLLPPLVVTKEELDQAVY 371

Length = 377

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score =  253 bits (648), Expect = 3e-79
 Identities = 136/422 (32%), Positives = 205/422 (48%), Gaps = 21/422 (4%)

Query: 76  FHLYS-----KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130
           FH +S      P+ +   +  Y++D  GRRYLD    +     GH HP VV +I  Q  R
Sbjct: 25  FHSWSAQGKINPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAAR 84

Query: 131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL 190
           +      + N A ++ A  +A + PG+L  VFFTN G +ANE A+ MARL+TG   ++S 
Sbjct: 85  LCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSA 144

Query: 191 RNAYHGNAAGTMGATAQSNWKFNVVQT-GVHHALNPDPYRGVFGA-----DGEMYAKDVQ 244
             +YHG     +  T       N     GV H   P  YR  F A     + E     ++
Sbjct: 145 YRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLE 204

Query: 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG 304
            +I+      +A  L ES+ G  GI+   PGYL  V +   + G + IADEV AGF RTG
Sbjct: 205 RVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG 264

Query: 305 SHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN--TFGGNPVCT 361
             F   E  GVVPD++T AKG+ +G +PLG V  +  IA     R Y    T+ G+P+  
Sbjct: 265 KWF-AIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLAC 323

Query: 362 AAGHAVLKVIQKDKLQNNAHVVGS-YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           AA  A +  ++++ +  NA  +G+  L   L  L +++  +G+VRG G    +E V DR+
Sbjct: 324 AAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRE 383

Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYS 476
            + P  A        M  +     + G      GN   + PP   T+++    + ++D +
Sbjct: 384 TREPL-APYGASSAAMAAVKAACKERGLLPFVNGNRIHVVPPCTVTEDEVREGLAILDAA 442

Query: 477 LS 478
           L+
Sbjct: 443 LA 444

Length = 451

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score =  247 bits (633), Expect = 8e-77
 Identities = 134/445 (30%), Positives = 219/445 (49%), Gaps = 38/445 (8%)

Query: 65  AKRKTFLSPSLFHLYSK-----PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPY 119
           A ++  L P  +H +S       L +V+ +  Y+ D +GRRYLD  GG+  V  G+    
Sbjct: 14  ADKRHLLHP--WHDFSSLGKEGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREE 71

Query: 120 VVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           + D+I +Q +R+ + T      N   A+ A  LA   PG+L  VF T  G+ A + A+  
Sbjct: 72  MADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRF 131

Query: 178 ARLYTGC------NDIISLRNAYHGNAAGTM--GATAQSNWKFNVVQTGVHHALNPDPYR 229
              Y           II+  +AYHG+   T      A    +F+     VHH  +P+PYR
Sbjct: 132 VHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYR 191

Query: 230 GVFGADGEMY----AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK 285
              G     +      + +D I    + ++A F++E I G GG+I   PGY   + +  +
Sbjct: 192 RPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICR 251

Query: 286 KAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAE 343
           +   L I+DEV  GF R G HF+  EA  G+ PDI+T AKG+ +G  PLGAV+ +  + +
Sbjct: 252 RYDILYISDEVVTGFGRLG-HFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLD 310

Query: 344 VLTRRN----YFN---TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD 396
           V++  N     F    T+ G+PV  AA    +++++++ L  +   VG Y +ERL +L++
Sbjct: 311 VISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRE 370

Query: 397 KYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAE---TLYIMDKMKEMGVLVGKGGFYGNVF 453
              ++GDVRG   +  VE V D+  K     +      I    +E G+LV       ++ 
Sbjct: 371 -LPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRP---LEHLC 426

Query: 454 RITPPLCFTKEDADYLVDVMDYSLS 478
            ++PPL  T+   D +V ++  ++ 
Sbjct: 427 VLSPPLIITRAQIDEIVAILRAAIE 451

Length = 466

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score =  247 bits (632), Expect = 8e-77
 Identities = 139/429 (32%), Positives = 214/429 (49%), Gaps = 37/429 (8%)

Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYL 139
            P+ +V G   Y++D +G++ LD  GG+  V  GH    V ++IV Q+  ++ +ST    
Sbjct: 24  PPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGT 83

Query: 140 NHAIADFAEALASKM-----PGNLKVVFFTNSGTEANELAIMMARLY---TGCND---II 188
            H     A  L+ ++     P  ++ VFF++ G+++ E A+ +AR Y    G  +    I
Sbjct: 84  TH---PRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFI 140

Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNV--VQTGVHHALNPDPYRGVFGAD-----GEMYAK 241
           SL+  YHG   G       + ++ N   +  G  H   P  YR  F          + A+
Sbjct: 141 SLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICAR 200

Query: 242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
            ++  I F     +A F++E +QG GG+I     + P V +   + G L IADEV  GF 
Sbjct: 201 LLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFG 260

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYF-------NT 353
           RTGS F G    GV PDI+ +AKGI +G +PLGA +    IA+       F        T
Sbjct: 261 RTGSWF-GSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYT 319

Query: 354 FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV 413
           + G+PV  AA  A L ++ ++ L  NA   G+YL E L  LK+++ ++GDVRG+G +L +
Sbjct: 320 YSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLAL 379

Query: 414 EFVTDRQLKTPAKAETLY---IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLV 470
           + V D+  + P      Y   + D  +E GVLV      G    ++PPL   +ED D +V
Sbjct: 380 DLVADKATREPIDPSKGYANAVADVARENGVLVRPS---GTKIILSPPLVIQREDVDRIV 436

Query: 471 DVMDYSLSK 479
           D +D  LS 
Sbjct: 437 DALDAGLSA 445

Length = 449

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score =  246 bits (629), Expect = 2e-76
 Identities = 132/407 (32%), Positives = 202/407 (49%), Gaps = 14/407 (3%)

Query: 85  VVD-GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA- 142
           V+D G    L D +G+ Y+D     ++   GH  P VV++I  Q  +  H T  Y+ H  
Sbjct: 27  VIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEP 86

Query: 143 IADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201
           +   A+ L    PG+  K V F  SG++AN+  I  AR YTG   IIS  NAYHG+  G+
Sbjct: 87  LVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGS 146

Query: 202 MGATAQS---NWKFNVVQTGVHHALNPDPYRGVFGADG-----EMYAKDVQDLIDFGTSG 253
           +  +  S     K+  +  G  H   PD YRG++         E  A   +    +  + 
Sbjct: 147 LSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPAD 206

Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313
            VA  + E+IQG GG++E  PGY  A+YK  ++ G L   D++Q G  RTG  +      
Sbjct: 207 EVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK-WSSISHF 265

Query: 314 GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK 373
            + PD+++  K +  G+P+ A+V   EI E L    +  T G NPV  AA  A + +I+ 
Sbjct: 266 NITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIED 325

Query: 374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM 433
           + L   +   G Y ++R      KY  +GDVRG G  +G++ V+D++LKT      L I 
Sbjct: 326 ESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKIC 385

Query: 434 DKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           +   E GV++      GNV R  PPL  T E  D  ++ ++ + + +
Sbjct: 386 NYCFEHGVVI--IAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTAL 430

Length = 445

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score =  238 bits (610), Expect = 1e-73
 Identities = 146/415 (35%), Positives = 207/415 (49%), Gaps = 20/415 (4%)

Query: 57  GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           GP +  +  +R   ++  +    + P+ V       + D +G R +D   GIA    G+ 
Sbjct: 16  GPKSQALAERRAAAVAAGVGS--TLPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNS 73

Query: 117 HPYVVDSIVNQIKRIQHSTVL---YLNHAIADFAEALASKMPGN--LKVVFFTNSGTEAN 171
            P VV+++  Q+ R  H+  +   Y        AE L    PG+   +   F NSG EA 
Sbjct: 74  APRVVEAVREQVARFTHTCFMVTPY--EGYVAVAEQLNRLTPGDHEKRSALF-NSGAEAV 130

Query: 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-WK--FNVVQTGVHHALNPDPY 228
           E A+ +AR YTG   ++   +AYHG    TM  TA+S  +K  F      V+ A    PY
Sbjct: 131 ENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPY 190

Query: 229 RGVFGA--DGEMYAKDVQDLID--FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
           R   G   DGE  A     +I+   G   ++A  + E IQG GG I  A G+LPA+ +  
Sbjct: 191 RDPKGLATDGEEAAARAITVIEKQVGA-DNLAAVIIEPIQGEGGFIVPAEGFLPALLEWC 249

Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           ++ G + IADEVQ GFARTG+ F   E  G+VPD++T AKGI  G+PL AV    EI + 
Sbjct: 250 RENGVVFIADEVQTGFARTGAWF-ACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDA 308

Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   T+GGNPV  AA  A ++ I++D L   A  + + + +RL AL  +   IGDV
Sbjct: 309 PHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDV 368

Query: 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPL 459
           RGRG ++ +E V       P    T  +       GV+V   G YGNV R+ PPL
Sbjct: 369 RGRGAMIAIELVKPGT-TEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPL 422

Length = 443

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score =  236 bits (605), Expect = 9e-73
 Identities = 134/405 (33%), Positives = 193/405 (47%), Gaps = 33/405 (8%)

Query: 87  DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQHSTVLYLNHAIAD 145
            G +  L D  G+ ++D  GG      GH +P VV ++ NQ+ +   HS  L L+   A 
Sbjct: 70  AGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAM 128

Query: 146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT---GCNDIISLRNAYHGNAAGTM 202
            A+ LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G +
Sbjct: 129 LAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGAL 188

Query: 203 GATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS 260
            ATA+S ++  F  +  G  H     P+      + E     + +    G    VA  + 
Sbjct: 189 SATAKSTFRKPFMPLLPGFRHV----PF-----GNIEAMRTALSECKKTGDD--VAAVIL 237

Query: 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV 320
           E IQG GG+I    GYL AV K   + G L I DEVQ G  RTG   +  E   V PDI+
Sbjct: 238 EPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHENVQPDIL 296

Query: 321 TMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN--TFGGNPVCTAAGHAVLKVIQKDKLQ 377
            +AK +G G+ P+GA + T E+  VL    + +  TFGGNP+  AA  A + V+ +  L 
Sbjct: 297 CLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLP 356

Query: 378 NNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK- 435
             A   G YL +    L  +Y  ++ + RG+G L+ +EFV +         E  Y     
Sbjct: 357 AQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN---------EIGYNFASE 407

Query: 436 MKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           M    VLV          RI PPL  T E  + ++     +L+ M
Sbjct: 408 MFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAAM 452

Length = 459

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score =  232 bits (594), Expect = 1e-71
 Identities = 135/398 (33%), Positives = 200/398 (50%), Gaps = 25/398 (6%)

Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS---TVLYLNHAIADFAEA 149
           ++D+ GRRY+D   GIA V  GH HP V+ ++  Q+ R  H+    V Y N+     AE 
Sbjct: 34  IWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVR--LAER 91

Query: 150 LASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 207
           L + +PG+   K +F T +G EA E A+ +AR  TG + +I+    +HG     M  T +
Sbjct: 92  LNALVPGDFAKKTIFVT-TGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGK 150

Query: 208 -SNWK--FNVVQTGVHHALNPDPYRGV-----FGADGEMYAKDVQDLIDFGTSGHVAGFL 259
              +K  F  +   V+H   P    GV       A  +++  DV           VA  +
Sbjct: 151 VVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVD-------PQRVAAII 203

Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
            E +QG GG       ++ A+ +   + G L IADEVQ GFARTG  F   E H V  D+
Sbjct: 204 IEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF-AMEHHEVAADL 262

Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN 379
            TMAKG+  G PL AV    EI +         T+GGNP+  AA HAVL VI+++ L   
Sbjct: 263 TTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCER 322

Query: 380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM 439
           A+ +G+ LK+RL +L++    I D+RG GF+  VEF  D     P+      +  K  E 
Sbjct: 323 ANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEF-NDADSGLPSAEFANRVRLKALEK 381

Query: 440 GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
           G+++   G +GNV R   P+    +     +D+++ S+
Sbjct: 382 GLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASI 419

Length = 425

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score =  230 bits (589), Expect = 6e-71
 Identities = 134/407 (32%), Positives = 191/407 (46%), Gaps = 13/407 (3%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+     +   L D +G R +D   GIA +  GH HP VVD++  Q+    H+  +   +
Sbjct: 16  PVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPY 75

Query: 142 -AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198
                 AE L    PG+   K VFF NSG EA E A+ +AR YTG   +++  + +HG  
Sbjct: 76  EGYVALAEKLNRIAPGSGPKKSVFF-NSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRT 134

Query: 199 AGTMGATAQS---NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG-- 253
             TM  TA+       F      V+ A  P PYR            ++            
Sbjct: 135 NMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVG 194

Query: 254 --HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
             +VA  + E +QG GG I  A G++PA+    ++ G + IADEVQ GFARTG+ F   E
Sbjct: 195 ANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMF-ACE 253

Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371
             G  PD++T AK + +G+PL  V    EI +         T+ GNP+  AA  AVL +I
Sbjct: 254 HEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAII 313

Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLY 431
           + + L   A  +G  + +RLT LK     IGDVRG G ++ VE V D     P       
Sbjct: 314 ESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELV-DPGTTEPDAGLAER 372

Query: 432 IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
           I       G+L+   G +GN+ R  PPL    E     +D++   L+
Sbjct: 373 IATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAILA 419

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score =  227 bits (579), Expect = 5e-69
 Identities = 139/420 (33%), Positives = 208/420 (49%), Gaps = 17/420 (4%)

Query: 57  GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           GP A  +L +R+  +   +      P          + D +G +Y+D  G I T+  GH 
Sbjct: 14  GPKAASLLERRQNIVPKGV--SNGIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHS 71

Query: 117 HPYVVDSIVNQIKRIQH---STVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANE 172
           HP V +++  Q+ +  H   + ++Y      + AE LA+  PG+  K V F NSG EA E
Sbjct: 72  HPKVKEALHKQVDQYIHTGFNVMMY--EPYIELAEKLAALAPGSFDKKVLFLNSGAEAVE 129

Query: 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN---WKFNVVQTGVHHALNPDPYR 229
            A+ +AR YT    IIS    +HG    TM  T++     + F      V+ A  P  YR
Sbjct: 130 NAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYR 189

Query: 230 GVFGADGEMYAKDV-QDLIDFGTSG----HVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
              G   E Y   + ++  +F  S      +A  + E +QG GG I  +  ++  V    
Sbjct: 190 RPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNIC 249

Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
            + G L +ADE+Q GFARTG +F   E   VVPD++T++K +G G+P+  V+   EI + 
Sbjct: 250 SEHGILFVADEIQTGFARTGKYF-AIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDE 308

Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   T+ G+P+  AA  AVL +I+K+ L + A  +G  +  R   +K+KY  IGDV
Sbjct: 309 SAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDV 368

Query: 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE 464
           RG G +   E V DR+ K P K  T  I  +  + G+L+   G YGNV R+  PL  T E
Sbjct: 369 RGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDE 428

Length = 451

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score =  223 bits (572), Expect = 3e-68
 Identities = 127/411 (30%), Positives = 191/411 (46%), Gaps = 29/411 (7%)

Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
            PL +   +  YL+DE+GR Y+D          GH HP +  +I  Q+ +++H     L 
Sbjct: 13  PPLPIERAEGVYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDKLEHVMFGGLT 72

Query: 141 HAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNA 193
           H  A + AE L    P  L+ VFF++SG+ A E+A+ MA  Y       G    ++ RN 
Sbjct: 73  HEPAIELAERLVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGRPGKTRFLAFRNG 132

Query: 194 YHGNAAGTMGATAQS--NWKFNVVQTGVHHALNPDPYRGVFGADGEM-YAKDVQDLIDFG 250
           YHG+  G M        +  F  +   V     P  YR     D E      ++ L++  
Sbjct: 133 YHGDTFGAMSVGDVGGFHALFEPLLFEVVFIPAPPCYRCWDPDDCEAECLAALEALLEE- 191

Query: 251 TSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
            +  +A F+ E + QG GG+    P YL  + +   + G L IADE+  GF RTG  F  
Sbjct: 192 HADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTGKLF-A 250

Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYFN--TFGGNPVCTA 362
            E  GV PDI+ ++KG+  G +PL A +TT EI E        + + +  T+ GNP+  A
Sbjct: 251 CEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTYTGNPLACA 310

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
           A  A L +++++        + + L+  L  L+D  G + DVR  G +  VE V D +  
Sbjct: 311 AALASLDLLEEEDWLEQVARIEAQLRAGLAPLRDHPG-VADVRVLGAIGAVELVRDVEPY 369

Query: 423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
             AK     I     E GVL+      GNV  + PP   T E+ + L   +
Sbjct: 370 IGAK-----IQQFFLERGVLLRP---LGNVIYLMPPYIITDEELEKLTAAI 412

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score =  222 bits (567), Expect = 2e-67
 Identities = 133/431 (30%), Positives = 204/431 (47%), Gaps = 44/431 (10%)

Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA 144
           +  GK  YL+D+NG +Y D   G  T   GH    + D+I  Q + +   + +Y +   +
Sbjct: 17  ISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEV---SFVYRSQFTS 73

Query: 145 DFAEALASKM----PGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAY 194
           + AE LA K+    PG+L   FF NSG+EANE A+ +A  +       G + I+S   +Y
Sbjct: 74  EPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSY 133

Query: 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALN-------PDPYRGVFGADGEM----YAKDV 243
           HG    TMGA + S     + +      L        P  YR              A ++
Sbjct: 134 HGI---TMGALSMSG--HPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATEL 188

Query: 244 QDLIDFGTSGHVAGFLSESIQGV-GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
           +  I+   + H+A F++E I G  G  +    GY   + +       L IADEV  G  R
Sbjct: 189 ETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGR 248

Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYF----NTFGGN 357
           TG+ F   E  GV PDI+T+ KG+G G  P+ A V +  + E + R +      +T   N
Sbjct: 249 TGAMF-AMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSAN 307

Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT 417
           P+  A   AVL+ ++K  L   A   G YL + L  ++ +  IIGDVRG+G L+GVEFV 
Sbjct: 308 PLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVA 367

Query: 418 DRQLKTPAKAE---TLYIMDKMKEMGVLV-----GKGGFYGNVFRITPPLCFTKEDADYL 469
           D++ K P          ++    + G+L+     G+ G  G+   I PP+  T  + D L
Sbjct: 368 DKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDEL 427

Query: 470 VDVMDYSLSKM 480
           + +   S+ +M
Sbjct: 428 LSIFAKSVEEM 438

Length = 447

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score =  218 bits (556), Expect = 1e-65
 Identities = 147/443 (33%), Positives = 232/443 (52%), Gaps = 29/443 (6%)

Query: 53  PPYDGPSADEILAKRKTFLSPSL-FHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATV 111
           PP  GP A E++ + K  LSP +   L+  PL    G    + D +G  ++D   G A  
Sbjct: 10  PP--GPKAKELIEREKRVLSPGIGVKLF--PLVPKRGFGALIEDVDGNVFIDFLAGAAAA 65

Query: 112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEA 170
             G+ HP +V ++  Q+  IQHS + Y +   A   AE LA   P     V F  SG++A
Sbjct: 66  STGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDA 125

Query: 171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATA----QSNWK--FNVVQTGVHHALN 224
            ++AI +++  T    I++   AYHG    T+GAT+    QS+ K  F+ +   V     
Sbjct: 126 VDMAIKVSKFSTRRPWILAFIGAYHGQ---TLGATSVAAFQSSQKRGFSPLMPNVVWIPY 182

Query: 225 PDPYRGVFGADG-----EMYAKDVQDLIDFGTS-----GHVAGFLSESIQGVGGIIELAP 274
           P+PYR  +G +G     E+  + +  L ++  S       VA   +E IQG  GI+    
Sbjct: 183 PNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPE 242

Query: 275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGA 334
            +   + K + + G L + DEVQ G  RTG  F   E   V PD++   KG+ +G+ L  
Sbjct: 243 NFFKELKKLLDEHGILLVMDEVQTGIGRTGKWF-ASEWFEVKPDLIIFGKGVASGMGLSG 301

Query: 335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL 394
           V+   E+ + LT  +   T   NPV +AA  A L++I+++ L  NA  VG ++K+RL  +
Sbjct: 302 VIGRKELMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEM 360

Query: 395 KDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFR 454
           K+ + +IGDVRG+G ++GVE V  ++   P    T  I  +  E+G+++   G +GNV R
Sbjct: 361 KESFEVIGDVRGKGLMIGVEIV--KENGKPDPELTGKICWRAFELGLILPSYGMFGNVIR 418

Query: 455 ITPPLCFTKEDADYLVDVMDYSL 477
           ITPPL  TKE A+  +++M+ ++
Sbjct: 419 ITPPLVITKEIAEKGLEIMERAI 441

Length = 457

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score =  213 bits (543), Expect = 2e-64
 Identities = 119/411 (28%), Positives = 187/411 (45%), Gaps = 43/411 (10%)

Query: 77  HLYSKPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS 134
           H Y  PL VV   GK  +++D  G++Y D     + V  GHCHP ++ +++NQ +++  +
Sbjct: 8   HNYH-PLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLT 66

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY----TGCND---- 186
           +  + N  +    + +   + G  KV    NSG EA E A+  AR +     G  +    
Sbjct: 67  SRAFYNDVLGLAEKYITD-LFGYDKV-LPMNSGAEAGETALKFARKWGYEVKGIPENQAK 124

Query: 187 IISLRNAYHGNAAGTMGATAQSNW--KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ 244
           II     + G   G   A+        F     G         Y      D E   K +Q
Sbjct: 125 IIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELV----DYN-----DVEALEKLLQ 175

Query: 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG 304
           D        +VA F+ E IQG  G+I    GYL  VY+  KK   L I DE+Q G  RTG
Sbjct: 176 D-------PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG 228

Query: 305 SHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA 363
                 +  GV PDIV + K +  G+ P+ AV+   ++  V+    + +T+GGNP+  A 
Sbjct: 229 -KLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAV 287

Query: 364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT 423
               L+V++++KL  NA  +G   ++ L  L  K   + ++RG+G L  + F        
Sbjct: 288 AVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVF-------D 340

Query: 424 PAKAETLY-IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
            +     + +  K+KE G+L        N+ R  PPL  TKE  D  ++++
Sbjct: 341 HSDGVNAWDLCLKLKENGLLAKPTH--DNIIRFAPPLVITKEQLDQALEII 389

Length = 400

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  212 bits (542), Expect = 1e-63
 Identities = 154/450 (34%), Positives = 223/450 (49%), Gaps = 29/450 (6%)

Query: 54  PYDGPSADEILAKRKTFLS-----PSLFHLYSKPLNVVDGKMQ--YLFDENGRRYLDAFG 106
             D   A    A  +T+L+      S    Y + L +   K Q  ++ D  G +YLD   
Sbjct: 6   RIDLLGAQATNATNETYLARQAEFESNVRSYPRKLPLAIAKAQGVWVTDVEGNQYLDCLA 65

Query: 107 GIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIAD-FAEALASKMPGNLK--VVFF 163
           G  T+  GH HP V+ SI + +        L L   + D F+E L S +PG  K   + F
Sbjct: 66  GAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQF 125

Query: 164 TN-SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT---GV 219
           T  SG +A E AI +A+ YTG +++IS    YHG   G +  T   + K N V     GV
Sbjct: 126 TGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPK-NAVNGLMPGV 184

Query: 220 HHALNPDPYRGVFGADGEMYAKDV----QDLIDFGTSGHV--AGFLSESIQGVGGIIELA 273
                P  YR   G  GE   K +    ++ I+   SG    A  + E+IQG GG+    
Sbjct: 185 QFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAP 244

Query: 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLG 333
             +L  + +  +K G L I DEVQAGFARTG  F  FE  G+ PDI+ M+K +G G+PL 
Sbjct: 245 VEWLQKIREVTQKHGILLIVDEVQAGFARTGKMF-AFEHAGIEPDIIVMSKAVGGGLPL- 302

Query: 334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTA 393
           AV+   +  +      +  TF GN +  A G   LK+++++ L  NA   G +LK +L  
Sbjct: 303 AVLGIKKEFDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAE 362

Query: 394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKT-----PAKAE-TLYIMDKMKEMGVLVGKGG 447
           L+ +Y  IG+VRGRG ++G+E V +RQ        PA  E    I     E G+L+ +GG
Sbjct: 363 LQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGG 422

Query: 448 FYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
             GNV R+ PPL  T+ + +  +D  + +L
Sbjct: 423 RNGNVVRLLPPLLITQAECEEFIDRFEQAL 452

Length = 459

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score =  212 bits (541), Expect = 2e-63
 Identities = 141/429 (32%), Positives = 201/429 (46%), Gaps = 41/429 (9%)

Query: 77  HLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV 136
              +     V G+  YL D  G+RYLDA GG A  C GH HP V+ +I  QI R+ ++  
Sbjct: 8   SPRATLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHT 67

Query: 137 LYLNHAIAD-FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIIS 189
            +     A+  A+ L +  P  L+ V+F + G+EA E A+ +AR Y            I+
Sbjct: 68  SFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIA 127

Query: 190 LRNAYHGNAAGTMGATAQSN--WK---FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ 244
            R +YHGN   T+GA A     W+   F  +    HH      YR      GE      Q
Sbjct: 128 RRQSYHGN---TLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYRE--QRAGESDEAYGQ 182

Query: 245 DLID--------FGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
            L D         G    VA F++E++ G   G +   PGY   + +   + G L I DE
Sbjct: 183 RLADELEAKILELG-PDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDE 241

Query: 296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYF--- 351
           V  G  RTG   +  E  GV PD+VT+AKG+G G  P+GAV+ +  I + +   + F   
Sbjct: 242 VMCGMGRTG-TLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQH 300

Query: 352 -NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
            +T+ G+    AA  AV +VI +D L  N    G  L+ RL     ++  +GD+RGRG  
Sbjct: 301 GHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLF 360

Query: 411 LGVEFVTDRQLKTP-AKAETLYIMDKMKEM--GVLV--GKG---GFYGNVFRITPPLCFT 462
           +GVE V DR  K P   A  L+   K + M  G++V    G   G  G+   + PP   T
Sbjct: 361 VGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIIT 420

Query: 463 KEDADYLVD 471
               D +V+
Sbjct: 421 AAQIDEIVE 429

Length = 443

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score =  209 bits (534), Expect = 3e-62
 Identities = 125/424 (29%), Positives = 199/424 (46%), Gaps = 35/424 (8%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL 139
           PL +  G+  Y++D+ G+RY++   G+ +V  G     +V++   Q+K++   H+     
Sbjct: 31  PLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKS 90

Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNA 193
           +  + D AE L +  P  +  VFFTNSG+EAN+  + +   Y           IIS +  
Sbjct: 91  HGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRG 150

Query: 194 YHGN--AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQ 244
           YHG   A+ ++     ++  F++    + H   P  YR  FG  GE         A +++
Sbjct: 151 YHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYR--FGLPGESEEAFATRLANELE 208

Query: 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG 304
            LI       +A F+ E + G GG+I     Y   +   ++K   L +ADEV  GF RTG
Sbjct: 209 ALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG 268

Query: 305 SHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNY-FNTFG------G 356
           + F G E  G+ PDI+ M+K + +   PL AV+   ++ + +   +    TFG      G
Sbjct: 269 NMF-GCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASG 327

Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
           +PV  A     L +I++  L  NA   G+ L+ RL AL D + ++G+VRG G +  VE V
Sbjct: 328 HPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALAD-HPLVGEVRGVGLIAAVELV 386

Query: 417 TDRQLKTPAKAE---TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
            D+  KTP +              E GV+       G+     PPL  T    D +VD  
Sbjct: 387 ADKATKTPFEPPGKVGARANAAAHEHGVISRA---MGDTLAFCPPLIITAAQVDEMVDRF 443

Query: 474 DYSL 477
             +L
Sbjct: 444 GRAL 447

Length = 460

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score =  205 bits (523), Expect = 2e-61
 Identities = 119/394 (30%), Positives = 184/394 (46%), Gaps = 36/394 (9%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P   V G+   ++D+ G+ Y+D  GGIA    GH HP +V +++ Q  ++ H    Y N 
Sbjct: 18  PFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNE 77

Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYH 195
            +   A+ L      +   VFF NSG EANE A+ +AR Y         ++I++ +N++H
Sbjct: 78  PVLRLAKKLVDATFADK--VFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFH 135

Query: 196 GNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
           G    T+    Q  +   F  +  G+ HA    PY  +  A         + LI   T  
Sbjct: 136 GRTLFTVSVGGQPKYSQGFAPLPGGIKHA----PYNDLAAA---------KALISDKT-- 180

Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313
                + E IQG GG++   P +L  + +   +   L I DEVQ G  RTG   + +  +
Sbjct: 181 --CAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHY 237

Query: 314 GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK 373
           GV PDI+T AK +G G P+GA++TT EIA  L    +  T+GGNP+  A    VL ++  
Sbjct: 238 GVTPDILTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNT 297

Query: 374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM 433
            +L            + L  +  +Y +  ++RG+G L+G       Q     KA+    +
Sbjct: 298 PELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQ----GKAKQ--FV 351

Query: 434 DKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD 467
           +   E GV+    G   NV R  P L  + +D D
Sbjct: 352 NAAAEEGVIALIAG--PNVVRFAPSLVISDDDID 383

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score =  203 bits (517), Expect = 8e-61
 Identities = 130/398 (32%), Positives = 200/398 (50%), Gaps = 41/398 (10%)

Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
           LF  Y +  +  V  +  YL D +G++YLD   GI     G  HP V  ++  Q   I H
Sbjct: 4   LFQNYKRAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWH 62

Query: 134 STVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRN 192
           S  LYLN       E +A K+ G+   + FF NSG EANE AI +AR  TG  +II+ +N
Sbjct: 63  SPNLYLN----SLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQN 118

Query: 193 AYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
           ++HG   G+M AT Q   K  F        +A+  D                V+ L    
Sbjct: 119 SFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFND-------------LNSVKAL---- 161

Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310
            + + A  + E +QG  G++     ++ A+    ++ G L I DEVQ G  RTG  +  F
Sbjct: 162 VNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLY-AF 220

Query: 311 EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV 370
           E +G+ PDI T+AKG+ NG+P+GA++    +       ++ +TFGGN +  AA  A L +
Sbjct: 221 EHYGIEPDIFTLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDI 280

Query: 371 IQKDKLQNNAHVVGSYLKERLT-ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAET 429
           +        A   G+YL+E+L  AL+DK  +   VRG G+++G+E   D      ++   
Sbjct: 281 MLTAGFLEQALENGNYLQEQLQKALQDKETVT-TVRGLGYMIGIETTAD-----LSQ--- 331

Query: 430 LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD 467
             +++  ++ G++V   G   NV R+ PPL  TKE+ +
Sbjct: 332 --LVEAARDKGLIVLTAG--TNVIRLLPPLTLTKEEIE 365

Length = 375

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score =  203 bits (518), Expect = 1e-60
 Identities = 121/392 (30%), Positives = 182/392 (46%), Gaps = 40/392 (10%)

Query: 86  VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIAD 145
           V G+   ++D+ G+ Y+D  GGIA    GHCHP +V ++  Q +++ H + ++ N     
Sbjct: 27  VRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEP--- 83

Query: 146 FAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGN 197
            A  LA K+      + VFF NSG EANE A  +AR Y          +II+  N++HG 
Sbjct: 84  -ALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGR 142

Query: 198 AAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255
              T+    Q  +   F      + H     P+  +           V+ +ID     H 
Sbjct: 143 TLFTVSVGGQPKYSDGFGPKPADITHV----PFNDL---------AAVKAVID----DHT 185

Query: 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV 315
              + E IQG GG+I   P +L  + +   +   L I DEVQ G  RTG   + +  +GV
Sbjct: 186 CAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG-DLFAYMHYGV 244

Query: 316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK 375
            PDI+T AK +G G P+GA++TT EIA       + +T+GGNP+  A   AV  +I   +
Sbjct: 245 TPDILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPE 304

Query: 376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK 435
           +            + L  +  KYG+  ++RG G L+G E      LK   K      ++ 
Sbjct: 305 VLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAE------LKPQYKGRARDFLNA 358

Query: 436 MKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD 467
             E GV+V   G   +V R  P L   + D D
Sbjct: 359 AAEEGVMVLVAG--PDVLRFAPSLVIEEADID 388

Length = 403

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score =  204 bits (521), Expect = 2e-60
 Identities = 119/420 (28%), Positives = 210/420 (50%), Gaps = 23/420 (5%)

Query: 70  FLSPSLFHLYSKP-LNVVDG-KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQ 127
           FL  ++    S P L+V+   +  Y+ D +G++Y+D F G      G+ HP+V++ +  Q
Sbjct: 45  FLHQAM----STPCLDVLASAEGIYIEDVDGKKYMD-FHGNNVHQLGYGHPHVIEKVKEQ 99

Query: 128 IKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDI 187
           + ++  S   + N    + AE L     G L  V F   GT A  +A+ +AR  TG   +
Sbjct: 100 MAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKV 159

Query: 188 ISLRNAYHGNAAGTMGATAQSNWKFNV--VQTGVHHALNPDPYRGVFG---ADGEMYAKD 242
           +SL +++HG +   +    ++ ++  +  +  GV        YRG F         YA  
Sbjct: 160 VSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADY 219

Query: 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
           ++ +I+    G +  F++E+++     +  +  Y   V +   K   L I DE+  G  R
Sbjct: 220 LEYVIE--KEGGIGAFIAEAVRNTDVQVP-SKAYWKRVREICDKHNVLLIIDEIPNGMGR 276

Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTP--EIAEVLTRRNYFNTFGGNPV 359
           TG  F   +A+G+ PDI+ + KG+G G +P+ A++T      A  ++  +Y  T   +P+
Sbjct: 277 TGEWF-THQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGHY--THEKSPL 333

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
             AA  A ++VI+++ L         +++ERL  +K KY +IGDVRG G L GVE VTDR
Sbjct: 334 GCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDR 393

Query: 420 QLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
             K  A  E   ++ +    G+        GNV +++PPL  T+E+    + +++ +++K
Sbjct: 394 HTKERAYDEAEAVLYRCLNNGLSFKVSQ--GNVIQLSPPLIITREELTQALAILEEAIAK 451

Length = 459

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score =  204 bits (521), Expect = 2e-60
 Identities = 123/421 (29%), Positives = 195/421 (46%), Gaps = 52/421 (12%)

Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI---------QHSTVLYLNHA 142
           YL+D  G + LD   G+  V  G+    + D+   Q++ +          H   + L   
Sbjct: 43  YLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIEL--- 99

Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHG 196
               A  LA   P     VFFTNSG+EAN+  + M R Y           IIS +N YHG
Sbjct: 100 ----AAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHG 155

Query: 197 N--AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLIDFG 250
           +  A  ++G     + + ++   G+ H   P  +        E +    A+ ++  I   
Sbjct: 156 STVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL 215

Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310
            + +VA F+ E IQG GG+I     Y P + +  +K   L +ADEV  GF RTG  ++G 
Sbjct: 216 GADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG-EWFGS 274

Query: 311 EAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN-YFN---TFGGNPVCTAAGH 365
           +  G+ PD++T+AKG+ +G IP+GAV     +AEVL      FN   T+ G+PV  A   
Sbjct: 275 QHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVAL 334

Query: 366 AVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
           A L++++ + +        G YL++RL  L D + ++G+VRG G +  +E V D+  +  
Sbjct: 335 ANLRILRDEGIVERVRDDTGPYLQKRLRELAD-HPLVGEVRGVGLVGAIELVKDKATRER 393

Query: 425 AKAETLYIMDKMKEMGVLVGKGGFYGN-VFR-------ITPPLCFTKEDADYLVDVMDYS 476
            +A           +G +     F    + R       I+PPL  T  + D LV+    +
Sbjct: 394 FEAGG--------GVGTICRDHCFANGLIMRAVGDRMIISPPLVITHAEIDELVEKARKA 445

Query: 477 L 477
           L
Sbjct: 446 L 446

Length = 456

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score =  202 bits (516), Expect = 4e-60
 Identities = 126/385 (32%), Positives = 191/385 (49%), Gaps = 22/385 (5%)

Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALA 151
           ++D  GR YLD  GGIA +  GH HP VV ++  Q+K++ H+    L +    +  E + 
Sbjct: 35  VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMN 94

Query: 152 SKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN 209
            K+PG+   K +  T +G+EA E A+ +AR  T  + +I+   AYHG    T+  T + N
Sbjct: 95  QKVPGDFAKKTLLVT-TGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVN 153

Query: 210 ---WKFNVVQTGVHHALNPDPYRGVFGADG-----EMYAKDVQDLIDFGTSGHVAGFLSE 261
                  ++   V+ AL P P  GV   D       ++  D            +A  + E
Sbjct: 154 PYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAA-------PEDIAAIIIE 206

Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT 321
            +QG GG    +P ++  +     + G + IADEVQ G  RTG+  +  E  GV  D+ T
Sbjct: 207 PVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMGVAADLTT 265

Query: 322 MAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAH 381
            AK I  G PL  V    E+ + +       T+ GNP+  AA  AVLKV +++ L   A+
Sbjct: 266 FAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKAN 325

Query: 382 VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGV 441
            +G  LK+ L A+ +K+  IGDVRG G ++ +E   D     P    T  I+ + ++ G+
Sbjct: 326 ALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGL 385

Query: 442 LVGKGGFYGNVFRITPPLCFTKEDA 466
           ++   G Y NV RI  PL  T EDA
Sbjct: 386 ILLSCGPYYNVLRILVPL--TIEDA 408

Length = 425

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score =  201 bits (512), Expect = 7e-60
 Identities = 130/416 (31%), Positives = 193/416 (46%), Gaps = 57/416 (13%)

Query: 86  VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIAD 145
           V GK   L+D  G+ YLD   GIA    GH  P  V ++  Q   + H + +Y      +
Sbjct: 2   VSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVE 61

Query: 146 FAEAL-----ASKMPGNLKVVFFTNSGTEANELAIMMARLY-------------TGCNDI 187
            A+ L     A +       VFF NSGTEANE AI  AR Y             +   + 
Sbjct: 62  LAKRLVASSFADR-------VFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEF 114

Query: 188 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245
           +S  N++HG   G +  T++  ++  F  +  GV        Y      + E   K +Q 
Sbjct: 115 VSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFV----EY-----GNLEAARKLIQ- 164

Query: 246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS 305
                  G  A    E +QG GGI      +L  +     +AG L + DEVQ G  RTG 
Sbjct: 165 ------KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG- 217

Query: 306 HFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP-VCTAAG 364
           + W  EA+GV PDI+T+AK +  G+P+GAV+ T ++A  +   ++ +TF G P VC AA 
Sbjct: 218 YLWAHEAYGVEPDIMTLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAA- 276

Query: 365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
            AVL  I K     +    G YL+E L         + +VRG G L+G+      QL  P
Sbjct: 277 LAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLLVGI------QLDVP 330

Query: 425 AKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           A      ++D  ++ G+LV   G  G+V R+ PPL  ++ + +  V+++   L  +
Sbjct: 331 AGP----LVDACRDSGLLVLTAG-KGDVVRLVPPLVISEAELEQAVEILADCLPAL 381

Length = 382

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score =  201 bits (514), Expect = 7e-60
 Identities = 135/380 (35%), Positives = 187/380 (49%), Gaps = 25/380 (6%)

Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST---VLYLNHAIADFAEA 149
           L+D  GR Y+D   GIA +  GH HP VV ++  Q+ +  H+    V Y ++     AE 
Sbjct: 34  LWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYV--TLAER 91

Query: 150 LASKMP--GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM---GA 204
           + +  P  G  K  FFT +G EA E A+ +AR YTG   +I+   A+HG    TM   G 
Sbjct: 92  INALAPIDGPAKTAFFT-TGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGK 150

Query: 205 TAQSNWKFNVVQTGVHHALNPDPYRGVFGADG-----EMYAKDVQDLIDFGTSGHVAGFL 259
            A     F      + HAL P+   GV   +       ++  D+           VA  L
Sbjct: 151 VAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADI-------APDQVAAIL 203

Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
            E IQG GG     P ++ A+     + G L IADEVQ GFARTG  F   E + V PD+
Sbjct: 204 LEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLF-AMEYYDVKPDL 262

Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN 379
           +TMAK +G G+P+ AVV   E+ +         T+ GNP+  AA  AVL VI ++KL   
Sbjct: 263 ITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQR 322

Query: 380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM 439
           A ++G++L E L   K     I D+R RG ++ VEF  D Q   P+   T     +  E 
Sbjct: 323 ALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEF-NDPQTGKPSPEFTRQYQRQALEE 381

Query: 440 GVLVGKGGFYGNVFRITPPL 459
           G+L+   G +GNV R   PL
Sbjct: 382 GLLLLSCGVHGNVIRFLYPL 401

Length = 421

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  201 bits (513), Expect = 3e-59
 Identities = 133/407 (32%), Positives = 202/407 (49%), Gaps = 25/407 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSI--VNQIKRIQHSTVLYL 139
           PL +   +  Y+ D  GR+++D   G  T+  GH HP V+++I  V   +   H+  L L
Sbjct: 46  PLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHT--LDL 103

Query: 140 NHAIAD-FAEALASKMPGNL----KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
              + D F + L + +P       K+ F   +GT+A E A+ + +  TG + ++S +  Y
Sbjct: 104 TTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGY 163

Query: 195 HGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGADGE----MYAKDVQDLID 248
           HG + G +        K  +     GV     P  YR  FG  GE         +++L+D
Sbjct: 164 HGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLD 223

Query: 249 FGTSGHV--AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306
              SG V  A  + E +QG GG+I     +L  + +  ++AG   I DE+Q+GF RTG  
Sbjct: 224 DPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK- 282

Query: 307 FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA 366
            + FE  G++PD+V ++K IG  +PL AVV   E  +      +  TF GN +  AAG A
Sbjct: 283 MFAFEHAGIIPDVVVLSKAIGGSLPL-AVVVYREWLDTWQPGAHAGTFRGNQMAMAAGSA 341

Query: 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV-----TDRQL 421
            L+ I++ +L  +A  +G  L+E L  L+  Y  +GDVRGRG +LGVE V      D   
Sbjct: 342 TLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALG 401

Query: 422 KTPAKAE-TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD 467
             PA  E    I  +    G+++  GG +G+V R  PPL  T E  D
Sbjct: 402 HPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQID 448

Length = 464

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score =  197 bits (503), Expect = 2e-58
 Identities = 133/420 (31%), Positives = 200/420 (47%), Gaps = 48/420 (11%)

Query: 74  SLFHLYSKPLNV-VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132
           SL ++ ++P  V   GK  +L+D NG+RYLD   G A  C GHC+P +V+++  Q +++ 
Sbjct: 10  SLMYITNRPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLI 69

Query: 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCNDI 187
           + +  + N  +A  A  L          VFF NSG EANE AI +AR +      G  +I
Sbjct: 70  NPSPAFYNEPMAKLAGLLTQH--SCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEI 127

Query: 188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK------ 241
           I+  +++HG    TM A+ +  W               D    +F      + K      
Sbjct: 128 ITFDHSFHGRTLATMSASGKPGW---------------DT---IFAPQVPGFPKAELNDI 169

Query: 242 -DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
             V+ LI   T   VA  L E +QG GG+I     ++  +    K+ G L I DEVQ G 
Sbjct: 170 ASVEKLITDKT---VAVML-EPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGC 225

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
            RTG+ F  +E  G+ PDI+T+ KGIG G+PL A++   E+A V    +   T+ GNP+ 
Sbjct: 226 GRTGTLF-AYELSGIEPDIMTLGKGIGGGVPLAALLAKAEVA-VFEAGDQGGTYNGNPLM 283

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
           TA G AV+  +            G YLKE+L  L ++ G+ G  RG G L  +    D  
Sbjct: 284 TAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERGLEG-ERGEGLLRALLLGKDIG 342

Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
            +   KA        M+  G+L+       N+ R  P L  T E+ D ++ ++   L K+
Sbjct: 343 PQIVEKAR------DMQPDGLLLNAP--RPNLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394

Length = 395

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score =  198 bits (504), Expect = 3e-58
 Identities = 123/402 (30%), Positives = 185/402 (46%), Gaps = 20/402 (4%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P      +  ++ D  G+ YLD   G  T+  GH HP +   I++ ++       L L  
Sbjct: 22  PTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTT 81

Query: 142 AIAD-FAEALASKMPG---NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 197
            + D F EAL + +P    + K+ F   SG +A E AI +A+ YTG  ++IS    +HG 
Sbjct: 82  PLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGM 141

Query: 198 AAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDV----QDLIDFGT 251
             G +  T     K    ++  GV     P  YR  FG  GE  +       ++ I+   
Sbjct: 142 TIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVE 201

Query: 252 SGHV--AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
           SG    A  + E+IQG GG++     +L  + +  +K     I DEVQAGF R+G+ F  
Sbjct: 202 SGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMF-A 260

Query: 310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369
           FE  G+ PD V M+K +G G+PL  ++  PE  +      +  TF GN +    G   L 
Sbjct: 261 FEHAGIEPDFVVMSKAVGGGLPLAVLLIAPEF-DAWQPAGHTGTFRGNQLAMVTGTEALN 319

Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAET 429
             + D L  NA   G  +   L  +  ++  IG+VRGRG + G+  V +RQ K    A  
Sbjct: 320 YWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYP 379

Query: 430 LY------IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKED 465
                   I     E G+L+  GG  G VFR+  P+   +E+
Sbjct: 380 RDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEE 421

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score =  198 bits (505), Expect = 4e-58
 Identities = 138/448 (30%), Positives = 217/448 (48%), Gaps = 42/448 (9%)

Query: 61  DEILAK-RKTFLSPSLFHLY------SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCC 113
           DE+LA  R  F  PS  HL            V  G+   + D  GRRY+DAF G+  V  
Sbjct: 6   DELLAWDRDHFFHPST-HLGDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNV 64

Query: 114 GHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN 171
           G+    V ++I  Q K +   H+ V +   A    ++ +  + P  +  V++  SG++AN
Sbjct: 65  GYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDAN 124

Query: 172 ELAIMMARLYTGC------NDIISLRNAYHGN--AAGTMGATAQSNWKFNVVQTGVHHAL 223
           E  I +   Y           IIS    YHG+    G++   +  +  F++    V H  
Sbjct: 125 ETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTE 184

Query: 224 NPDPYRGVFGADGEMY--------AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPG 275
            P  YR    AD  M         A ++++LI       +A F++E + G GGI+    G
Sbjct: 185 APHYYRR---ADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAG 241

Query: 276 YLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGA 334
           Y PA+   +KK   L IADEV  GF R GS F G + +G+ PD++T+AKG+ +   PL  
Sbjct: 242 YWPAIQAVLKKYDILLIADEVVTGFGRLGSMF-GSDHYGIEPDLITVAKGLTSAYAPLSG 300

Query: 335 VVTTPEIAEVLTRRNYFN-------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            +   ++ +VL + +  +       T+ G+P+C AA  A L +++++ L  NA  VG+Y 
Sbjct: 301 SIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYF 360

Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT---PAKAETLYIMDKMKEMGVLVG 444
           + RL A    + ++G+VRG G L  VEFV DR  +T   PA      +     E GV + 
Sbjct: 361 RARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGV-IA 419

Query: 445 KGGFYGNVFRITPPLCFTKEDADYLVDV 472
           +   +G++    PPL  T+ +AD +V +
Sbjct: 420 RAMPHGDILGFAPPLVLTRAEADEIVAI 447

Length = 461

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score =  195 bits (498), Expect = 1e-57
 Identities = 128/418 (30%), Positives = 204/418 (48%), Gaps = 48/418 (11%)

Query: 77  HLYSKPLNVVDGKMQ--YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS 134
           H Y  PL VV  K +  +++D  G+RYLD     + V  GHCHP +V ++  Q +++  S
Sbjct: 14  HNY-HPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLS 72

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCND 186
           +  + N    +FAE + +K+ G  KV+   N+G EA E AI +AR +             
Sbjct: 73  SRAFYNDVFGEFAEYV-TKLFGYDKVLP-MNTGAEAVETAIKLARKWGYKVKGIPENQAI 130

Query: 187 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK----D 242
           I+S +  +HG    T+GA + S               +PD     FG     + K    +
Sbjct: 131 IVSAKGNFHGR---TLGAISMST--------------DPDSRTN-FGPYVPGFKKIPYNN 172

Query: 243 VQDLID-FGTSG-HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           ++ L +     G +V  F+ E IQG  G++    GYL  V +   K   L IADE+Q G 
Sbjct: 173 LEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGL 232

Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPV 359
            RTG      +   V PDIV + K +  G+ P+ AV+   ++   +    + +T+GGNP+
Sbjct: 233 GRTGK-LLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPL 291

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
             A   A L+V++++KL  NA  +G   +++L  L     II +VRGRG L  +      
Sbjct: 292 ACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLPK--PIITEVRGRGLLNAIVI---D 346

Query: 420 QLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
           + KT   A  L +  K+KE G+L      +GN+ R+ PPL  T+E  D  ++++   +
Sbjct: 347 ESKTGRTAWDLCL--KLKEKGLLAKPT--HGNIIRLAPPLVITEEQLDEGLEIIKKVI 400

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score =  194 bits (496), Expect = 2e-57
 Identities = 121/396 (30%), Positives = 188/396 (47%), Gaps = 46/396 (11%)

Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA 144
            V G+   L+D+ G+ Y+D  GGIA    GH HP + +++  Q  +  H+   Y N  + 
Sbjct: 25  PVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVL 84

Query: 145 DFAEAL-----ASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNA 193
             A+ L     A +       VFF NSG EANE A+ +AR Y      +  + I++ +NA
Sbjct: 85  RLAKKLIDATFADR-------VFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNA 137

Query: 194 YHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251
           +HG    T+ A  Q  +   F  +   + HA     Y  +  A           LID  T
Sbjct: 138 FHGRTLFTVSAGGQPKYSQDFAPLPPDIRHA----AYNDLNSA---------SALIDDQT 184

Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
                  + E IQG GG+I     +L  + +   +   L I DEVQ G  RTG   + + 
Sbjct: 185 ----CAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYM 239

Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371
            +GV PD++T AK +G G P+GA++TT + A V+T   +  T+GGNP+ +A    VL++I
Sbjct: 240 HYGVTPDVLTTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELI 299

Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLY 431
              ++ N       +  ERL  +  +YG+  ++RG G L+G     +       KA+   
Sbjct: 300 NTPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYA----GKAKQ-- 353

Query: 432 IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD 467
           I  +  + GV+V   G   NV R  P L  ++E+  
Sbjct: 354 ISQEAAKAGVMVLIAG--PNVVRFAPALNISEEEIT 387

Length = 406

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score =  192 bits (491), Expect = 4e-56
 Identities = 133/428 (31%), Positives = 197/428 (46%), Gaps = 41/428 (9%)

Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA 144
           +V G+  Y++D+ G+RYLD   G+  V  GH    + ++   Q   +    +    H  A
Sbjct: 38  IVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPA 97

Query: 145 -DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGN 197
            + AE LA+  PG+L  VFFT  G+EA E A  +A+ Y       G + +IS   AYHG 
Sbjct: 98  IELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGT 157

Query: 198 AAGTMGATAQSNWK--FNVVQTGVHHALNPDPYR-GVFGADGEMY----AKDVQDLIDFG 250
             G +  T    +K  F  +  G     N + YR    G D E +    A  +++ I+F 
Sbjct: 158 TQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFE 217

Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310
               VA    E +Q  GG     PGY   V +   +   L ++DEV   F R G  F G 
Sbjct: 218 GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMF-GC 276

Query: 311 EAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAE-VLTRRNYF---NTFGGNPVCTAAGH 365
           E  G VPDI+T AKGI +G  PLGA++ +  + E  L     F    TFGG+PV  A   
Sbjct: 277 ERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVAL 336

Query: 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK--- 422
           A L + +++ L ++        +  L  L D   I+GDVRG G+  G+E V D+  K   
Sbjct: 337 ANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIVGDVRGDGYFYGIELVKDKATKETF 395

Query: 423 TPAKAETLYIMDKMKEMGVLVGK---GGFY------GN-VFRITPPLCFTKEDADYLVDV 472
           T  ++E L         G L       G Y      G+ V ++ PPL   +E+ D +  +
Sbjct: 396 TDDESERLL-------RGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQI 448

Query: 473 MDYSLSKM 480
           +   L++ 
Sbjct: 449 LRSVLTEA 456

Length = 460

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score =  191 bits (486), Expect = 5e-56
 Identities = 131/410 (31%), Positives = 194/410 (47%), Gaps = 48/410 (11%)

Query: 74  SLFHLY---SKPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI 128
           SL H Y    +P  VV   G+   ++D+ GR YLD   GIA    GH  P +V ++  Q 
Sbjct: 10  SLAHYYLPVYRPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQA 69

Query: 129 KRIQHSTVLYLNHAIADFAEAL--ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND 186
            ++ H++ ++ +      AE L  AS+     + VF  NSGTEANE AI + R +     
Sbjct: 70  GKLWHTSNVFYSAPPLKLAEELVTASRFA---EKVFLCNSGTEANEAAIKLVRKWASSQG 126

Query: 187 -------IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY 239
                  I++ R ++HG     + ATAQ  +     Q G       +P  G F      Y
Sbjct: 127 RPADKRVIVTFRGSFHGRTLAAVTATAQPKY-----QEGY------EPLPGGF-----RY 170

Query: 240 A--KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ 297
               DV+ L      G VA  + E IQG GG++  APG+L  V     +   L + DE+Q
Sbjct: 171 VDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQ 230

Query: 298 AGFARTGSHF--WGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFG 355
            G  RTG+ F  W  +   V PDIVT+AK +G G P+GA++  P++AE +    +  TFG
Sbjct: 231 CGMGRTGTLFAHWQEQ---VTPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGAHGTTFG 287

Query: 356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           GNP+  A     L+ +   ++  N     + L+  L AL  ++G+   VRGRG +LG   
Sbjct: 288 GNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVL 347

Query: 416 VTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKED 465
                 +  A      I+D   E G+L+ + G   +V R  P L  T  +
Sbjct: 348 APAHAGQAGA------ILDLAAEHGLLLLQAG--PDVLRFVPALNLTDAE 389

Length = 408

>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional

 Score =  187 bits (477), Expect = 4e-55
 Identities = 123/389 (31%), Positives = 193/389 (49%), Gaps = 48/389 (12%)

Query: 78  LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL 137
           LY K L +V G+  Y++D  GRRYLD   GI     GH HP  V+ +  Q++++  +  +
Sbjct: 3   LYRKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPM 62

Query: 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 197
           + +    +  E L+  +  N + V+  NSGTEA E A+  ARLYTG  +II++ NA+HG 
Sbjct: 63  FEHEEKEEMLEELSKWV--NYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGR 120

Query: 198 AAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255
             G + AT +  ++  F  +  G  H     P+  V  A   +             +   
Sbjct: 121 TMGALSATWKPKYREDFEPLVPGFKHI----PFNDVEAAKEAI-------------TKET 163

Query: 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV 315
           A  + E IQG GGI+     ++  +    +  G L IADEVQ+G  RTG  F   E + V
Sbjct: 164 AAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYKV 221

Query: 316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK 375
            PDIVTM KGIGNG+P+   +T  ++     R  + +TFGGNP+   A    L+++++++
Sbjct: 222 EPDIVTMGKGIGNGVPVSLTLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRER 277

Query: 376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK 435
           L   A        E+   +K +  +    RGRG ++G+       LK P        +++
Sbjct: 278 LVEKA-------GEKFIEIKGERVVT--TRGRGLMIGI------VLKKPVGK----YVEE 318

Query: 436 MKEMGVLVGKGGFYGNVFRITPPLCFTKE 464
           ++  G LV   G    V R+ PPL  +K+
Sbjct: 319 LQNRGYLVHTAG--QRVIRLLPPLIISKD 345

Length = 364

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score =  187 bits (477), Expect = 3e-54
 Identities = 129/387 (33%), Positives = 184/387 (47%), Gaps = 31/387 (8%)

Query: 88  GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFA 147
           G +  L D  G  ++D  GG      GH +P V+ ++ NQ+ +    +   L+   A  A
Sbjct: 64  GGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLA 123

Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYT---GCNDIISLRNAYHGNAAGTMGA 204
           + LA+  PG LK  FF NSGTE+ E A+ +A+ Y    G    I+   A+HG + G + A
Sbjct: 124 KTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSA 183

Query: 205 TAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES 262
           TA+  ++  F  +  G HH          FG D E   K + +    G    VA  + E 
Sbjct: 184 TAKPAFRKPFMPLLPGFHHV--------AFG-DIEAMLKALNECKKTGDD--VAAIILEP 232

Query: 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM 322
           IQG GG+I    GYLPAV     + G L I DEVQ G  RTG  F   E  GV PDI+ +
Sbjct: 233 IQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF-ACEHEGVQPDILCL 291

Query: 323 AKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN--TFGGNPVCTAAGHAVLKVIQKDKLQNN 379
           AK +G G+ P+GA + T  +  VL    + +  TFGGNP+  AA  A +  + +  L   
Sbjct: 292 AKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQ 351

Query: 380 AHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK-MK 437
           A + G +L +    L  +Y  +I + RG+G L+ +EF            E  Y   K + 
Sbjct: 352 AAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFR---------DNEIGYAFAKELF 402

Query: 438 EMGVLVGKGGFYGNVFRITPPLCFTKE 464
           +  +LV          RI PPL  T E
Sbjct: 403 QQNILVAGTLNNAKSIRIEPPLTITIE 429

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  184 bits (470), Expect = 5e-53
 Identities = 124/416 (29%), Positives = 198/416 (47%), Gaps = 29/416 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-N 140
           PL +  G+ + L+D NG  Y D    I     GH  P + ++I  Q+ +I HST+L L N
Sbjct: 39  PLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLAN 98

Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA------RLYTGCNDIISLRNAY 194
                 AE L   +P  LK VF+++SG  A E+AI MA      +        ++L+NAY
Sbjct: 99  VPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAY 158

Query: 195 HGNAAGTM--GATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD-GEMYAKDVQDLIDFGT 251
           HG+  G +  GA    +  ++ +         P  YR  +G D  E+  K +++L +   
Sbjct: 159 HGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLK 218

Query: 252 SGH--VAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
             H  +A  + E  +QG GG+I +  GYL  +     K   L I DEV  GF RTG  F 
Sbjct: 219 EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF- 277

Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-----TRRNYF--NTFGGNPVC 360
             E   V PDI+T  KG+  G +P+   VTT EI          ++ +F  +++ GNP+ 
Sbjct: 278 ACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLG 337

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A   A L++ +K  L         Y+  +L  L      +GD+R  G ++G+E V +++
Sbjct: 338 CAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-LKHVGDIRQLGLMVGIELVKNKE 396

Query: 421 LKTPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
            K P +      + +  + +E+G+L       GN     PPL  T ++ D ++ ++
Sbjct: 397 TKEPFEWTERVGVQVCKRSRELGMLTRP---LGNTIVFMPPLASTIDELDEMLRIL 449

Length = 460

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score =  181 bits (461), Expect = 1e-51
 Identities = 127/434 (29%), Positives = 203/434 (46%), Gaps = 66/434 (15%)

Query: 77  HLYSKPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS 134
           H Y  P+ VV    K   ++D  G++YLD     + V  GHCHP ++ ++  Q +++  S
Sbjct: 52  HNYH-PIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLS 110

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCND 186
           +  + N    +FAE L + M G   V+   N+G E  E AI +AR +             
Sbjct: 111 SRAFYNDKFPEFAEYL-TSMFGYDMVLPM-NTGAEGVETAIKLARKWGYEKKGIPKNEAI 168

Query: 187 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246
           I+S    +HG    T+ A + S               + +  RG FG     + K     
Sbjct: 169 IVSCCGCFHGR---TLAAISMSC--------------DNEATRG-FGPLLPGHLK----- 205

Query: 247 IDFGTSG-----------HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
           +DFG               +A FL E IQG  G++    GYL AV +   K   L IADE
Sbjct: 206 VDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADE 265

Query: 296 VQAGFARTGSHF---WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYF 351
           +Q G ARTG      W      V PD+V + K +G G IP+ AV+   ++   +    + 
Sbjct: 266 IQTGLARTGKMLACDW----EEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHG 321

Query: 352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFL 410
           +TFGGNP+ +A   A L+V+Q +KL   +  +G  L+++L  ++ ++  +I +VRGRG L
Sbjct: 322 STFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLL 381

Query: 411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD--- 467
             V    +     P  A  + +  K+KE G+L      +  + R+ PPL  ++++     
Sbjct: 382 NAVVL--NSPKLGPVSAYDVCL--KLKERGLLAKPT--HDTIIRLAPPLSISEDELQECS 435

Query: 468 -YLVDVMDYSLSKM 480
             L DV+++ L K+
Sbjct: 436 KALSDVLEHDLPKL 449

Length = 474

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  178 bits (453), Expect = 6e-51
 Identities = 119/420 (28%), Positives = 189/420 (45%), Gaps = 54/420 (12%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY--L 139
           P+ +V  +  YL+  +GR  +DA         GH HPY+  +I  Q+ R+ H  V++   
Sbjct: 25  PIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDH--VIFAGF 82

Query: 140 NH-AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRN 192
            H      A+ L +  PG L  VFF++SG+ A E+A+ MA  Y       G +  +SLR 
Sbjct: 83  THEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRG 142

Query: 193 AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF----------GADGEMYAKD 242
            YHG+  GTM          +V   G  HAL    Y  +               +     
Sbjct: 143 GYHGDTIGTM----------SVGDRGGMHAL----YTPLLFEQVTAPFPPDGYEQATLDA 188

Query: 243 VQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
           ++ L++   +G +A F+ E  +QG GG++   P YL  + +   + G L I DE+  GF 
Sbjct: 189 LEALLE-KHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFG 247

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT----RRNYFN--TF 354
           RTG+ F   E  GV PDI+ ++KG+  G +PL A + T EI E        + + +  ++
Sbjct: 248 RTGTLF-ACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSY 306

Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
             NP+  AA +A L + + + +      + + L E L   +D  G + DVR  G +  VE
Sbjct: 307 TANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRDLPG-VADVRVLGAIGAVE 365

Query: 415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD 474
                      + +   +     E GVL+      GN   + PP   T E+ D + D + 
Sbjct: 366 LDR-----PVLERDGPALRAFALERGVLLRP---LGNTIYLMPPYIITAEELDRITDAIV 417

Length = 423

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score =  177 bits (451), Expect = 9e-51
 Identities = 127/388 (32%), Positives = 184/388 (47%), Gaps = 25/388 (6%)

Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST---VLYLNH-AIADFAE 148
           L D  G  Y+D   GIA +  GH HP +V ++  Q+++  H+    V Y ++  +A+   
Sbjct: 34  LKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKIN 93

Query: 149 ALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM---GAT 205
           ALA  + G  K  FFT +G EA E A+ +AR +TG   +I+    +HG    TM   G  
Sbjct: 94  ALAP-VSGQAKTAFFT-TGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKV 151

Query: 206 AQSNWKFNVVQTGVHHALNPDPYRGVFGADG-----EMYAKDVQDLIDFGTSGHVAGFLS 260
           A     F      V+H   P    G+   D       ++  D++       +  VA  + 
Sbjct: 152 APYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIE-------AKQVAAIIF 204

Query: 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV 320
           E +QG GG        + A+ +   + G + IADEVQ+GFARTG  F   + +   PD++
Sbjct: 205 EPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLF-AMDHYADKPDLM 263

Query: 321 TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA 380
           TMAK +  G+PL  VV    I +         T+ GNP+  AA HAVL +I K+ L   A
Sbjct: 264 TMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERA 323

Query: 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMG 440
           + +G  LK  L   K+    I  VRG G ++  EF  D Q   P+ A    I  +    G
Sbjct: 324 NQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEF-NDPQTGEPSAAIAQKIQQRALAQG 382

Query: 441 VLVGKGGFYGNVFRITPPLCFTKEDADY 468
           +L+   G YGNV R   PL  T  DA +
Sbjct: 383 LLLLTCGAYGNVIRFLYPL--TIPDAQF 408

Length = 421

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score =  177 bits (451), Expect = 2e-50
 Identities = 131/412 (31%), Positives = 199/412 (48%), Gaps = 37/412 (8%)

Query: 88  GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-----A 142
            K   L D +G + LDAF G+  V  G+    +V++   Q++ + ++T  +  H     A
Sbjct: 35  AKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYF--HFGSEPA 92

Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHG 196
           I   A  LA + PG+L  V+FT  G++A + A+   R Y            ISL   YHG
Sbjct: 93  I-RLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHG 151

Query: 197 NAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGE-MYAKDVQDLID----F 249
           +++   G TA   +   F++     H   +P PYR   G D + + A  V  L       
Sbjct: 152 SSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL 211

Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
           G   +VA F  E IQG GG+I    G+L A+ ++ ++ G L +ADEV  GF RTG  F  
Sbjct: 212 GAD-NVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLF-A 269

Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-------TRRNYFNTFGGNPVCT 361
            EA GVVPD++T+AKG+ +G +P+GAV+ +  + + +           +  T+  +PV  
Sbjct: 270 CEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSA 329

Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL 421
           A G  VL++  +  L  N    G      L AL+  + ++GDVRGRG L  +E V D+  
Sbjct: 330 AVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRA-HPLVGDVRGRGLLGALELVADKAT 388

Query: 422 KTPAKAE---TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLV 470
           KTP  A       I D+    G++     F   V    P LC T+ + D + 
Sbjct: 389 KTPFDAALDPADRIFDRAYANGLVF--RAFGDGVLGFAPALCCTEGEFDLIF 438

Length = 459

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score =  173 bits (441), Expect = 2e-49
 Identities = 123/419 (29%), Positives = 194/419 (46%), Gaps = 58/419 (13%)

Query: 81  KPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY 138
           KPL+VV   G+  +++D +G RYLD     + V  GHCHP ++ ++V Q  R+  ++  +
Sbjct: 21  KPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAF 80

Query: 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISL 190
            N  +A   E LA+ + G+ KV+   NSG EA E AI   R +         G  +II  
Sbjct: 81  RNDQLAPLYEELAA-LTGSHKVLPM-NSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVC 138

Query: 191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
            + +HG     +G +                  +PD   G FG     +    + ++ FG
Sbjct: 139 ADNFHGRTLSIVGFST-----------------DPDARGG-FGP----FTPGFR-VVPFG 175

Query: 251 ---------TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
                    T   VA FL E IQG  G+I    GY   V +         I DE+Q G  
Sbjct: 176 DAEALEAAITPNTVA-FLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLG 234

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           RTG      E  G+  D+  + K +  G  P+ AV++  E+  VL    + +TFGGNP+ 
Sbjct: 235 RTGK-LLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLA 293

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A   A LKV+ ++ +  NA  +G+Y  E L +++    I+ +VRGRG +L VE   +  
Sbjct: 294 CAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIRS--NIVREVRGRGLMLAVELEPE-- 349

Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
               A+       + +KE G+L      + +  R+ PPL  T+E  D+ ++ +   L+ 
Sbjct: 350 -AGGARQ----YCEALKERGLLAKDT--HDHTIRLAPPLVITREQVDWALEQIAKVLAH 401

Length = 401

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score =  171 bits (435), Expect = 1e-48
 Identities = 122/418 (29%), Positives = 194/418 (46%), Gaps = 63/418 (15%)

Query: 82  PLNVVDGKMQ--YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL 139
           PL +V  + +  ++ D  G RY+D     + V  GH HP ++ ++ +Q  ++  ++  + 
Sbjct: 21  PLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAFH 80

Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--------GCNDIISLR 191
           +  +  + E +A K+ G   V+   N+G EA E AI  AR +            +II+  
Sbjct: 81  SDQLGPWYEKVA-KLTGKDMVLPM-NTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACE 138

Query: 192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGA--DGEMYAKDVQDLIDF 249
             +HG    TM A + S+                +  RG FG    G          I +
Sbjct: 139 GNFHGR---TMAAVSLSS--------------EEEYKRG-FGPMLPG-------IKKIPY 173

Query: 250 G--------TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
           G         + + A FL E IQG  GI     G+L A  +  K+   L IADE+Q G  
Sbjct: 174 GDLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLG 233

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           RTG  F   +   V PD+  + K +G G+ P+  V    +I  V T  ++ +TFGGNP+ 
Sbjct: 234 RTGKLF-ACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLA 292

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A   A L+V++++KL   +  +G Y KE+L  + +   +I +VRGRG  +GVE      
Sbjct: 293 CAVSIAALEVLEEEKLPERSLELGEYFKEQLKEIDNP--MIKEVRGRGLFIGVE------ 344

Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
           L  PA+       + +KE G+L  +   +  V R  PPL  TKE+ D+  + +   LS
Sbjct: 345 LNEPARP----YCEALKEEGLLCKET--HETVIRFAPPLVITKEELDWAFEKIKAVLS 396

Length = 396

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score =  170 bits (433), Expect = 7e-48
 Identities = 125/420 (29%), Positives = 188/420 (44%), Gaps = 42/420 (10%)

Query: 80  SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL 139
           + P  +V  +  Y  D +GR+ LD   G+     GH  P +V+++  Q   + ++    +
Sbjct: 30  AAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQM 89

Query: 140 NHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRN 192
            H +A + AE LA   PG L  VFFTNSG+E+ + A+ +A  Y           +I    
Sbjct: 90  GHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRER 149

Query: 193 AYHG-NAAGT----MGATAQSNWK-FNVVQTGV-H--HALNPDPYRGVFG--ADGEMYAK 241
            YHG    G     +      N K F  +  GV H  H L+        G    G   A 
Sbjct: 150 GYHGVGFGGISVGGIVN----NRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELAD 205

Query: 242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
           D++ L+    +  +A  + E + G  G++    GYL  + +   K G L I DEV  GF 
Sbjct: 206 DLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFG 265

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR---------RNYF 351
           R G+ F   E  GV PDI+T AKG+ NG IP+GAV+ + EI +   +           Y 
Sbjct: 266 RLGAAF-AAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGY- 323

Query: 352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL 411
            T+  +PV  AAG A L + +++ L   A  +  Y ++ + +LK    +I D+R  G + 
Sbjct: 324 -TYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVI-DIRNIGLVA 381

Query: 412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD 471
           G+E            A       K  E G+LV      G+   ++PPL   K   D LVD
Sbjct: 382 GIEL---APRPGAPGARGYEAFMKCFEKGLLVRYT---GDTIALSPPLIIEKAQIDELVD 435

Length = 445

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score =  161 bits (409), Expect = 9e-45
 Identities = 117/414 (28%), Positives = 191/414 (46%), Gaps = 29/414 (7%)

Query: 79  YSKPLNVV--DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR--IQHS 134
           Y +    V    K   L+DE+G+ Y+D F G   +  GH +P +  ++++ +    I HS
Sbjct: 13  YCRSFPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHS 72

Query: 135 TVLYLNHAIADFAEALASKM--PGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISL 190
             +    A  +F E     +  P  L  KV F   +GT A E A+ +AR  TG ++++S 
Sbjct: 73  LDMA-TEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSF 131

Query: 191 RNAYHGNAAGTMGATAQSNWKFNVVQTGV-HHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
            NA+HG   G++  T      F     GV    ++  PY G  G D +      + L++ 
Sbjct: 132 TNAFHGMTLGSLSVTGNR---FKRQGAGVPLSNVSRMPYDGYLGGDVD-TIAYFEKLLED 187

Query: 250 GTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
            +SG    A  + E++QG GGI   +  +L  + K  ++   L I D++QAG  RTG  F
Sbjct: 188 SSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG-TF 246

Query: 308 WGFEAHGVVPDIVTMAKGI-GNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA 366
           + FE  G+ PDIV ++K I G G+PL   +  PE+ +V     +  TF GN +      A
Sbjct: 247 FSFEPAGIEPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATA 305

Query: 367 VLKVI-QKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTP 424
            L+     D  +         ++ERL  +  +Y  +I  VRGRG + G+E          
Sbjct: 306 ALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECG------DG 359

Query: 425 AKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
             A    I     E G+++   G    V ++ PPL   +E     +D+++ ++ 
Sbjct: 360 DLAG--KIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVE 411

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score =  162 bits (411), Expect = 1e-44
 Identities = 119/412 (28%), Positives = 193/412 (46%), Gaps = 30/412 (7%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P  +V  K  Y    +GRR LD   G+  V  GH  P +V+++  Q   + ++    + H
Sbjct: 29  PRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGH 88

Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND------IISLRNAY 194
             A + A  +A   PG L  VFFTNSG+E+ + A+ +A  Y           +I     Y
Sbjct: 89  PKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGY 148

Query: 195 HG-NAAGT-MGATAQSNWKFNVVQTGVHHALNP-DPYRGVFG----ADGEMYAKDVQDLI 247
           HG    G  +G    +   F  +  GV H  +  D  R  F       G   A +++ L+
Sbjct: 149 HGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLV 208

Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
               +  +A  + E + G  G++    GYL  + +   K G L I DEV  GF R G+ F
Sbjct: 209 TLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPF 268

Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFN--TFGGNPV 359
              +  GV PD++T AKG+ NG IP+GAV  + EI +   +       +F+  T+ G+P+
Sbjct: 269 -AAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPL 327

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
             AA  A L + +++ L   A  +  Y ++ L +L+D   +I D+R  G +  VE    R
Sbjct: 328 ACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVI-DIRNLGLVGAVEL-APR 385

Query: 420 QLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD 471
             K   +A  +++  K  E G+++    + G++  ++PPL   +   D L D
Sbjct: 386 DGKPGKRAYEVFL--KCFEKGLMI---RYTGDILALSPPLIIEEAQIDELFD 432

Length = 442

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score =  159 bits (405), Expect = 6e-44
 Identities = 119/401 (29%), Positives = 187/401 (46%), Gaps = 51/401 (12%)

Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR--IQHS----TVLYLNHA 142
           K  +L+DE+G+ Y+D F G   +  GH +P +  ++++ ++R  I H     T      A
Sbjct: 29  KGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTT-----A 83

Query: 143 IADFAEALASK--MPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198
             +F E        P  L  KV F   +GT A E A+ +AR  TG  +I++  N +HG  
Sbjct: 84  KREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMT 143

Query: 199 AGTMGATAQSNWKF----NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG- 253
            G++  T   N        V    V       PY G FG D +     ++ L++  +SG 
Sbjct: 144 LGSLAVTG--NSHKRQGAGVPLNNVTRM----PYDGYFGGDVD-TLAYLEKLLEDSSSGV 196

Query: 254 -HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
              A  + E++QG GGI   +  +L  + K  +K   L I D++QAG  RTG+ F+ FE 
Sbjct: 197 DLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT-FFSFER 255

Query: 313 HGVVPDIVTMAKGI-GNGIPLGAVVTTPEI-----AEVLTRRNYFNTF-GGNPVCTAAGH 365
            G+ PDIVT++K I G G+P+  V+  PE+      E      +  TF G N     A  
Sbjct: 256 AGITPDIVTLSKSISGYGLPMALVLIKPELDVWKPGE------HNGTFRGNNLAFVTATA 309

Query: 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTDRQLKTP 424
           A+ +    D  +      G  ++ERL  +  KY G+  +VRGRG + G++F         
Sbjct: 310 ALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDF------GDG 363

Query: 425 AKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKED 465
             A    I  +  E G+++   G    V ++ PPL   +E+
Sbjct: 364 ELAGK--IAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEE 402

Length = 425

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score =  153 bits (388), Expect = 5e-41
 Identities = 124/426 (29%), Positives = 203/426 (47%), Gaps = 52/426 (12%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL 139
           PL +   +  Y++D NG++YLDA  G+     G   P +V +   Q+ ++   HS   + 
Sbjct: 72  PLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHS---FW 128

Query: 140 NHAIA---DFAEAL-----ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------N 185
           N       D A+ L     A KM      VFFTNSG+EAN+  + +   Y          
Sbjct: 129 NRTTKPSLDLAKELLEMFTARKMGK----VFFTNSGSEANDTQVKLVWYYNNALGRPNKK 184

Query: 186 DIISLRNAYHGN---AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM---- 238
             I+   +YHG+   +A   G  A    KF++    V H   P  +R  F   GE     
Sbjct: 185 KFIARSKSYHGSTLISASLSGLPALHQ-KFDLPAPFVLHTDCPHYWR--FHLPGETEEEF 241

Query: 239 ---YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
               A ++++LI       +A F++E + G GG+I     Y   +   +KK   L IADE
Sbjct: 242 STRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADE 301

Query: 296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-TRRNYFNT 353
           V   F R G+ F G + + + PD+V++AK + +  +P+GAV+ +PEI++V+ ++ N   +
Sbjct: 302 VICAFGRLGTMF-GCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGS 360

Query: 354 FG------GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR 407
           F       G+PV  A     LK+ ++  +  + + +    ++ + A      IIG++RG 
Sbjct: 361 FAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGS-PIIGEIRGT 419

Query: 408 GFLLGVEFVTDRQLKTPAKAE---TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE 464
           G +LG EFV ++    P  AE     Y   + K+ G+LV      G+   ++PPL  T E
Sbjct: 420 GLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLV---RVAGDNIMMSPPLIITPE 476

Query: 465 DADYLV 470
           + D L+
Sbjct: 477 EVDELI 482

Length = 504

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score =  147 bits (374), Expect = 2e-39
 Identities = 111/415 (26%), Positives = 182/415 (43%), Gaps = 37/415 (8%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+ +  GK  YL D +G  Y+D   G   +  GH HP VV+++  Q++R           
Sbjct: 36  PIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLER---GLSFGAPT 92

Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
            +  + AE L  ++P +++ V F NSGTEA   AI +AR YTG + II     YHG++  
Sbjct: 93  ELEVELAELLIERVP-SIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDS 151

Query: 201 TM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID-FGTSGH-VAG 257
            +  A + +    +    GV   +        +         D++ L + F   G  +A 
Sbjct: 152 LLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN--------DLEALEEAFEEYGDDIAA 203

Query: 258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGV 315
            + E + G  G++   PG+L  + +  ++ G L I DEV  GF  A  G+       +GV
Sbjct: 204 VIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGA----QGYYGV 259

Query: 316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQ 372
            PD+ T+ K IG G+P+GA     EI E L          T  GNP+  AAG A L+ + 
Sbjct: 260 EPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELM 319

Query: 373 KDKLQNNAHVV--GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD--RQLKTPAKAE 428
            ++      +   G  L E L A  +++GI   V   G + G+ F  +  R      +++
Sbjct: 320 TEE-GVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSD 378

Query: 429 TLYIMDKMKEM---GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
                     +   GV +    F      ++     T+ED D  ++  D +  ++
Sbjct: 379 VERFAKFFHHLLNRGVYLAPSQFEAGF--LSTAH--TEEDIDRTLEAADEAFKEL 429

Length = 432

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score =  142 bits (359), Expect = 2e-37
 Identities = 107/364 (29%), Positives = 177/364 (48%), Gaps = 34/364 (9%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY--L 139
           P  +V G+  +L+D +G+RYLD   G+     G+    +  +   Q++++ +  + +   
Sbjct: 37  PRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTT 96

Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNA 193
           + A+ + +E L S +PG+     +TNSG+EANE+ I   R Y           +I   N 
Sbjct: 97  HPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNG 156

Query: 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD------PYRGVFGAD------GEMYAK 241
           YHG+   T+ ATA    KF     G    L PD      PY    G +      G   A 
Sbjct: 157 YHGS---TLAATALGGMKFMHEMGG----LIPDVAHIDEPYWYANGGELTPAEFGRRAAL 209

Query: 242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
            +++ I    + +VAGF++E  QG GG+I     Y P + +  ++   L  ADEV  GF 
Sbjct: 210 QLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFG 269

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN----YFNTFGG 356
           RTG  F   E  G  PD +++AKG+ +G +P+G +V +  IAE L  +     +  T+ G
Sbjct: 270 RTGEWF-AHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSG 328

Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHV-VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           +PV  A   A LK ++ + +        G YL+  L  +   + ++G+V+G G +  ++F
Sbjct: 329 HPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQF 388

Query: 416 VTDR 419
             D+
Sbjct: 389 AEDK 392

Length = 460

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  139 bits (351), Expect = 3e-36
 Identities = 113/412 (27%), Positives = 184/412 (44%), Gaps = 33/412 (8%)

Query: 88  GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADF 146
           G+  +L D  G+RYLDA         GH +P +   I +Q+ +++H  +   +H  + + 
Sbjct: 36  GEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIEL 95

Query: 147 AEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAG 200
           +E L    P  L   F+ ++G+ A E+A+ M+  Y            ++L N+YHG    
Sbjct: 96  SERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLA 155

Query: 201 TM--GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGE-----MYAKDVQDLIDFGTSG 253
            M  G  A     +  +        +PD Y    G   E     M+A   Q L +     
Sbjct: 156 AMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDE- 214

Query: 254 HVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
            +A  + E  IQG GG+    P YL  + ++  + G   I DE+  GF RTG+ F   E 
Sbjct: 215 -IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF-ACEQ 272

Query: 313 HGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-----TRRNYF--NTFGGNPVCTAAG 364
            G+ PD + ++K +  G +PL AV+TT  + +       T R +   +++ GNP+  AA 
Sbjct: 273 AGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAA 332

Query: 365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
            A L + ++D +  N   +   + E    L D +  + +VR  G +L +E V D+  KTP
Sbjct: 333 LATLDIFEQDNVIENNRALARRMAEATAHLAD-HPHVAEVRQTGMILAIEMVQDKASKTP 391

Query: 425 ---AKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
               +   L +     E G L+      G+V    PP   T E  D+L +V 
Sbjct: 392 YPWQERRGLKVYQHALERGALLRP---LGSVVYFLPPYVITPEQIDFLAEVA 440

Length = 466

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score =  131 bits (331), Expect = 1e-33
 Identities = 104/359 (28%), Positives = 157/359 (43%), Gaps = 55/359 (15%)

Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQH 133
            P  V  GK  YL+D +G  Y+D       +  GH HP VV+++   ++R        + 
Sbjct: 30  TPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPTEA 89

Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA 193
             +L         A+ + S++P  +++V F NSGTEA   A+ +AR YTG + II     
Sbjct: 90  EILL---------AKEIISRVPS-VEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGC 139

Query: 194 YHGNA------AGTMGATAQSNWKFNVVQTGVHHALNPD----PYRGVFGADGEMYAKDV 243
           YHG+       AG+  AT            GV           PY             D+
Sbjct: 140 YHGHHDALLVKAGSGAATL-----GLPTSPGVPEDFAKLTLVLPY------------NDL 182

Query: 244 QDLID-FGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF- 300
           + L + F   G  +AG + E + G  G++   P +L  +    ++ G L I DEV  GF 
Sbjct: 183 EALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFR 242

Query: 301 -ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFN--TFGG 356
            A  G+     E  GV PD+ T+ K IG G+P+GA     EI E L      +   T  G
Sbjct: 243 VALGGAQ----EYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSG 298

Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           NP+  AAG A LK++ ++ +      +   L E L+ + +  GI   V   G +  + F
Sbjct: 299 NPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFF 357

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  127 bits (321), Expect = 3e-32
 Identities = 108/340 (31%), Positives = 154/340 (45%), Gaps = 49/340 (14%)

Query: 82  PLNVVDGKMQYLFDENGRRYLD---AFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY 138
           P+ +  GK  Y +D +G +Y+D   A+G I T   GH HP+    I   I     + VLY
Sbjct: 36  PVVMERGKGAYFYDVDGNKYIDYLAAYGPIIT---GHAHPH----ITKAITEAAENGVLY 88

Query: 139 ---LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH 195
                  I +FA+ L   +P +L+ V F NSGTEA    I +AR YTG   II     YH
Sbjct: 89  GTPTELEI-EFAKMLKEAIP-SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYH 146

Query: 196 GN------AAG----TMGATAQSNWKFNVVQTGVHHALN-PDPYRGVFGADGEMYAKDVQ 244
           G+      AAG    T+G    +    ++ Q  +    N  +  +      G+       
Sbjct: 147 GHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGD------- 199

Query: 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG 304
                     VA  L E I G  GI+E  PG+L AV +   +AG L I DEV   F    
Sbjct: 200 ---------EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFR--- 247

Query: 305 SHFWGFEAH-GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV---LTRRNYFNTFGGNPVC 360
             + G +   GV PD+  + K IG G+P+GA     +I E    L       T  GNP  
Sbjct: 248 FMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPAS 307

Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI 400
            AAG A L+V+Q++ +      +G+ L+E +    +K+GI
Sbjct: 308 MAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGI 347

Length = 428

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  126 bits (317), Expect = 1e-31
 Identities = 113/432 (26%), Positives = 180/432 (41%), Gaps = 34/432 (7%)

Query: 77  HLYSKPL-NVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST 135
           H ++ PL  +  G+  +L   +GRRYLDA     T   GH  P +  +I  Q   ++   
Sbjct: 41  HPHTLPLVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVM 100

Query: 136 VLYLNHAIA-DFAE---ALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND--- 186
           +    H  A   AE   A+A +  G   L  VF+ ++G+   E+A+ MA  Y        
Sbjct: 101 LAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHR 160

Query: 187 ---IISLRNAYHGNAAGTM--GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK 241
               I+L N YHG   G +  G        +  +      A +PD Y    G   E YA 
Sbjct: 161 RTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYAL 220

Query: 242 D----VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ 297
                +Q L +       A  L   +Q  GG+    P YL    +     G   IADE+ 
Sbjct: 221 QAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIA 280

Query: 298 AGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL---TRRNYF-- 351
            GF RTG+ F   E  GV+PD++ ++KG+  G +PL AV+ T ++ +     +R   F  
Sbjct: 281 TGFGRTGTLF-ACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLH 339

Query: 352 -NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
            +++ GNP+  AA  A L +   D +        + + + L A   ++  + DVR  G +
Sbjct: 340 SHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQ-LAAQIGEHPHVADVRQAGMV 398

Query: 411 LGVEFVTDRQLKTPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD 467
           +  E       +TP        L+        GV++      G+V    PP C  +    
Sbjct: 399 VAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRP---LGDVLYWMPPYCVDEAQLA 455

Query: 468 YLVDVMDYSLSK 479
            L D   +++ +
Sbjct: 456 LLADTTRHAIDE 467

Length = 472

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  119 bits (299), Expect = 2e-29
 Identities = 104/396 (26%), Positives = 164/396 (41%), Gaps = 40/396 (10%)

Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEAL 150
           +L  E+G   +DA     +   GH HP +  +   QI  + H     L H  A      L
Sbjct: 33  FLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKL 92

Query: 151 ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHGNAAGTMGA 204
            +     L  VF+++SG+ + E+AI MA  Y+          +++ R+ YHG+    M  
Sbjct: 93  LNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSV 152

Query: 205 T-----AQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL 259
                   S WK  + +     A  P P RG    +   Y + ++ LID      VA  +
Sbjct: 153 CDPEGGMHSLWKGTLPEQIF--APAP-PVRGSSPQEISEYLRSLELLID----ETVAAII 205

Query: 260 SESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318
            E I QG GG+       +  V     K   L IADE+  GF RTG  F    A GV PD
Sbjct: 206 IEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF-ATLAAGVTPD 264

Query: 319 IVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN------YFNTFGGNPVCTAAGHAVLKVI 371
           I+ + K +  G +   A + T ++A++++  N      +  TF  NP+  A  HA L++I
Sbjct: 265 IMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEII 324

Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLY 431
           +    +     + + L   L+ L    G + DVR  G +  VE      ++   +A    
Sbjct: 325 ETGMWRKQVKRIEAELIAGLSPLAHLPG-VADVRVLGAIGVVEMEQPVDMEEATQAAV-- 381

Query: 432 IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD 467
                 + GV +     +G +  + PP   T E   
Sbjct: 382 ------DHGVWLRP---FGRLVYVMPPYITTSEQIA 408

Length = 422

>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  115 bits (290), Expect = 5e-28
 Identities = 106/359 (29%), Positives = 156/359 (43%), Gaps = 54/359 (15%)

Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHSTVLYLNHAIA 144
           YL+D +G  Y+D  G    +  GH HP VV++++   ++        +    L       
Sbjct: 43  YLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVEL------- 95

Query: 145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGA 204
             AE +   +P ++++V   NSGTEA   AI +AR YTG + II     YHG+A   +  
Sbjct: 96  --AELVIELVP-SIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLL-V 151

Query: 205 TAQSNWKFNVVQTGVHHALNPD-PYRGVFGADGEMYAKD-----------VQDLID-FGT 251
            A S         G      PD P  GV       +AK            V++L + +G 
Sbjct: 152 KAGS---------GAATLGLPDSP--GVPED----FAKHTLTAPYNDLEAVEELFEEYG- 195

Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
              +A  + E + G  G++   PG+L  + +   + G L I DEV  GF R         
Sbjct: 196 -DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGA-QG 252

Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFN--TFGGNPVCTAAGHAVL 368
            +GV PD+ T+ K IG G+P+GA     EI E L      +   T  GNP+  AAG A L
Sbjct: 253 YYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATL 312

Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA 427
           K++++         +   L E L     K GI   V   G + G+ F TD  +   A A
Sbjct: 313 KLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGL-FFTDEPVTNYADA 370

Length = 426

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score =  114 bits (288), Expect = 1e-27
 Identities = 117/446 (26%), Positives = 173/446 (38%), Gaps = 97/446 (21%)

Query: 92  YLFDEN-GRRYLDAFGGIATVCCGHCHPYVVDS----------IVNQIKRIQHSTVLYLN 140
           YL D   GRRYLD F   A+   G  HP + D            +N+       TV    
Sbjct: 37  YLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEM-- 94

Query: 141 HAIADFAEALAS-KMPGNLKVVFFTNSGTEANELAIMMA-------RLYTGCND-----I 187
              A F +  A       L  +FF + G  A E A+ +A           G +      +
Sbjct: 95  ---ARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKV 151

Query: 188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP----YRGVFG---------- 233
           + LR A+HG +  T+  T                  N DP        F           
Sbjct: 152 LHLRGAFHGRSGYTLSLT------------------NTDPRKTARFPKFDWPRIDNPKLR 193

Query: 234 ------ADGEMYAKDVQDLID----FGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYK 282
                    E+ A + + L      F    H +A F++E IQG GG     P +  A+ +
Sbjct: 194 FPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRE 253

Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIA 342
              +   L I DEVQ G   TG+  W ++  GV PDIV   K       +  ++    + 
Sbjct: 254 LCDEHDALLIFDEVQTGVGLTGT-AWAYQQLGVRPDIVAFGKKT----QVCGIMAGRRVD 308

Query: 343 EVLTRRNYF-------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK 395
           EV    N F       +T+GGN V       +L+VI++D L  NA   G YL  RL  L 
Sbjct: 309 EV--EDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELA 366

Query: 396 DKY-GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFR 454
            ++  ++ +VRGRG +   +         P  A+   ++ ++ E GVLV   G     FR
Sbjct: 367 AEFPAVVSNVRGRGLMCAFDL--------PTTADRDEVIRRLWEEGVLVLPCGERSIRFR 418

Query: 455 ITPPLCFTKEDADYLVDVMDYSLSKM 480
             P L  T E+ D  +D +  +L ++
Sbjct: 419 --PALTVTTEEIDAAIDALRRALPEV 442

Length = 443

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score =  111 bits (279), Expect = 1e-26
 Identities = 113/421 (26%), Positives = 177/421 (42%), Gaps = 59/421 (14%)

Query: 92  YLFDEN-GRRYLDAFGGIATVCCGHCHPYVVDSIVNQ-------IKRIQHSTVLYLNHAI 143
            L D   GRRYLD F   A++  G  HP +VD +  +       + +  +S V     A+
Sbjct: 30  VLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVY--TVAM 87

Query: 144 ADFAEALAS-KMPGNLKVVFFTNSGTEANELAIMMA------------RLYTGCNDIISL 190
           A F +  A       L  +FF   G  A E A+  A                    ++ L
Sbjct: 88  ARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHL 147

Query: 191 RNAYHGNAAGTMGATAQS----------NWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240
           R A+HG +  T+  T             +W   +    +   L+      V   + E   
Sbjct: 148 RQAFHGRSGYTLSLTNTDPRKTARFPKFDWP-RIDNPKLTFPLDAPNLDQVIALEEEALR 206

Query: 241 KDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299
              Q    F    H +A F++E IQG GG     P +L A+     +   L I DEVQ G
Sbjct: 207 ---QARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTG 263

Query: 300 FARTGSHFWGFEAHGVVPDIVTMAK-----GIGNGIPLGAVVTTPEIAEVLTRRNYFNTF 354
              TG+  W ++  GV PDIV   K     GI  G  +  V     +  V +R N  +T+
Sbjct: 264 VGLTGT-AWAYQQLGVQPDIVAFGKKTQVCGIMAGRRVDEVAD--NVFAVPSRLN--STW 318

Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGV 413
           GGN V       +L++I++++L +NA V G++L  RL  L  ++  ++ + RGRG +   
Sbjct: 319 GGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAF 378

Query: 414 EFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
           +         P+ A+   ++ ++   GVL+   G     FR  PPL  T+E+ D  +D +
Sbjct: 379 DL--------PSTADRDEVIRQLYREGVLLLGCGERSIRFR--PPLTVTREEIDAAIDAI 428

Query: 474 D 474
            
Sbjct: 429 R 429

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  109 bits (275), Expect = 5e-26
 Identities = 106/414 (25%), Positives = 177/414 (42%), Gaps = 36/414 (8%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
            L V  G+  +L+D +GRRYLDA         GH +P +  ++ +Q+  ++H+ +    H
Sbjct: 37  LLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTH 96

Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMA------RLYTGCNDIISLRNAY 194
             A + AE LA+   G L   FF + G  A E+A+ M+      R      + + L N Y
Sbjct: 97  EPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGY 156

Query: 195 HGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAK-------DVQD 245
           HG   G +G T  + +K  ++ +    H   +PD  RG     GE  A        DV+ 
Sbjct: 157 HGETIGALGVTDVALFKDAYDPLIRHAHVVASPDA-RG--ARPGETAADVAARALADVRR 213

Query: 246 LIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG 304
           L     +G +A  + E  +Q   G+    P YL  +     + G   IADE+  G  RTG
Sbjct: 214 LFA-ERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG 272

Query: 305 SHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYF--NTFGGN 357
           + F+  E  GV PD + ++KGI  G +PL  V++   I          R +   +++ GN
Sbjct: 273 T-FFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGN 331

Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT 417
           P+   A  A L +  +D +        + L+  L  L   +  +  +R RG +   +   
Sbjct: 332 PLACRAALATLDLFAEDDVLARNARKSARLRAALAPL-AAHPQVRHLRQRGTIFAFDVAL 390

Query: 418 DRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD 471
           D      A+  +    +   E  +L+      G    + PP     ++  +L +
Sbjct: 391 DGD---AARTFSRRFFEAALERELLLRP---IGTTVYLMPPYVLDDDEIAWLAE 438

Length = 453

>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

 Score =  106 bits (267), Expect = 5e-25
 Identities = 96/333 (28%), Positives = 150/333 (45%), Gaps = 27/333 (8%)

Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEAL 150
            L   +GRR +D          G+ HP +  ++ +QI  + H     + H  A +    L
Sbjct: 36  ELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKL 95

Query: 151 ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC-----NDIISLRNAYHGNAAGTMGAT 205
            +  P  L+ VF  +SG+ A E+A+ MA  Y           ++LR+ YHG+  G M   
Sbjct: 96  VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVC 155

Query: 206 AQSNWKFNVVQTGV-HHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-----SGHVAGFL 259
              N   ++ +  +  +   P P       DGE    D +D+  F          +A  +
Sbjct: 156 DPDNSMHSLYKGYLPENLFAPAPQSRF---DGEW---DERDIAPFARLMAAHRHEIAAVI 209

Query: 260 SESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318
            E I QG GG+    P +L  V K   + G L IADE+  GF RTG  F   E  G+ PD
Sbjct: 210 LEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLF-ACEHAGIAPD 268

Query: 319 IVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQ 372
           I+ + K +  G + L A +TT E+AE ++        +  TF GNP+  A  +A L +++
Sbjct: 269 ILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLE 328

Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR 405
               Q     + + L+E L  L+D   ++ DVR
Sbjct: 329 SGDWQQQVAAIEAQLREELAPLRD-APMVADVR 360

Length = 428

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  100 bits (250), Expect = 8e-23
 Identities = 111/429 (25%), Positives = 179/429 (41%), Gaps = 53/429 (12%)

Query: 75  LFHLYSK-----PLNVV---DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVN 126
           ++H YS      P+  V   DG M  L  ++GRR +D          G+ HP +  +  N
Sbjct: 14  IWHPYSSVTDPIPVYPVERADGVMITL--KDGRRLIDGMSSWWAALHGYNHPRLNAAATN 71

Query: 127 QIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---- 181
           Q+ ++ H       H  A + A+ L   +P +L  +FF +SG+ A E+A+ MA  Y    
Sbjct: 72  QLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAK 131

Query: 182 --TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN---------PDPYRG 230
                    ++R+ YHG+    M              TG+H   N         P P   
Sbjct: 132 GEVQRTKFATIRSGYHGDTWHAMSVCDPV--------TGMHGLFNHSLPVQYFLPQPSIK 183

Query: 231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL 290
                 +   + +QDL++       A  L   +QG GG+   +P YL    +   + G L
Sbjct: 184 FGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVL 243

Query: 291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN 349
            I DE+  GF RTG  F   E  GVVPDI+ + K +  G + L A +TT  IA+ +    
Sbjct: 244 LIFDEIATGFGRTGKLF-ALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGE 302

Query: 350 -----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                +  TF  NP+  A     ++++ +   Q N   + + LK+ L     ++  + +V
Sbjct: 303 AKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELAPAA-EFDSVAEV 361

Query: 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE 464
           R  G +  VE      +K P    TL    +  E G+ V     +G +  I PP   + +
Sbjct: 362 RVLGAIGVVE------MKEPVNMATL--QPRFVEHGIWVRP---FGKLVYIMPPFIISPD 410

Query: 465 DADYLVDVM 473
           +   L   +
Sbjct: 411 ELSQLTSGL 419

Length = 429

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score = 96.4 bits (240), Expect = 2e-21
 Identities = 111/480 (23%), Positives = 187/480 (38%), Gaps = 69/480 (14%)

Query: 47  PFDYSPPPYD----GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYL 102
           P + + P       GP +   + +          H      +    +  YL D +G R L
Sbjct: 5   PNEPTGPLMKTEIPGPKSKAAMKQLNEVFDARAVHF---LADYEKSRGNYLVDVDGNRLL 61

Query: 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAI-----ADFAEALASKM--- 154
           D +  I+++  G+ +P    +++   +  + +T L    A+      D+A+ L   +   
Sbjct: 62  DLYSQISSIPIGYNNP----ALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKV 117

Query: 155 -PGNLKVVFFTNSGTEANELAIMMARLY-------------------------TGCND-- 186
            P     V+   SG++ANELA   A +Y                          G  D  
Sbjct: 118 APKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLS 177

Query: 187 IISLRNAYHGNAAGTMGAT-AQSNWKFNVVQTGVHHALNPD---PYRGVFGADGEMYAKD 242
           I+S + A+HG   G++  T ++   K ++       A  P    P       + +   + 
Sbjct: 178 ILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRC 237

Query: 243 VQDLIDFGTSGH--VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
           ++++ D     H  VA  + E IQ  GG    +P +   +    KK     I DEVQ G 
Sbjct: 238 LEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGV 297

Query: 301 ARTGSHFWGFEAHGV--VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358
             TG  FW  E   +   PD+VT +K        G     P        R  FNT+ G+P
Sbjct: 298 GATGK-FWAHEHWNLDDPPDMVTFSKKFQTA---GYFFHDPAFRPNKPYR-QFNTWMGDP 352

Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVT 417
                   +++ I++  L  N   VG YL   L  L+ KY   I ++RG+G    + +  
Sbjct: 353 SRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAW-- 410

Query: 418 DRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
                TP +A+   ++ K +  GV +G  G      R+ P L F K  AD  ++++   +
Sbjct: 411 ----DTPDEAKRDKLLKKARNNGVNIGGCGV--KAIRLRPMLVFQKHHADIFLEIISKII 464

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 92.6 bits (230), Expect = 3e-20
 Identities = 84/296 (28%), Positives = 129/296 (43%), Gaps = 26/296 (8%)

Query: 95  DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM 154
           D  G+ ++D  G   ++  GH HP + D+I    +R   S  L     I  FAE L S +
Sbjct: 49  DSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAER-GTSYGLTSEQEIL-FAEELFSYL 106

Query: 155 PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV 214
                 + F +SGTEA   A+ +AR  TG + II     YHG+A   +   + S      
Sbjct: 107 GLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSE---TS 163

Query: 215 VQTGVHHALNPDPYRG---VFGADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGII 270
           + T + H ++ D           +     + V + +     GH VAG + E I    G++
Sbjct: 164 LDT-LTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSL-----GHRVAGVIFEPICANMGVV 217

Query: 271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA-HGVVPDIVTMAKGIGNG 329
              PG++  + ++ ++ G L I DEV  GF R      G  A + V PDI    K +G G
Sbjct: 218 LPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVA--QGGAAAIYHVKPDITVYGKILGGG 274

Query: 330 IPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQK----DKLQN 378
           +P  AVV    I + L          T  GNP+  AAG A + + ++     +L  
Sbjct: 275 LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLST 330

Length = 433

>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase

 Score = 88.3 bits (219), Expect = 9e-19
 Identities = 84/298 (28%), Positives = 129/298 (43%), Gaps = 31/298 (10%)

Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQHSTVLYLNHAIADFA 147
           K  Y +D +G  Y+D  G       GH    V+ ++   +K+         L + +A   
Sbjct: 89  KGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLA--- 145

Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGT 201
           E +   +P ++++V F NSGTEA    + +AR YTG   II     YHG+A      AG+
Sbjct: 146 EMVIDAVP-SVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGS 204

Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
             AT        V +      L   PY  +  A  +++  +          G +A  + E
Sbjct: 205 GVATLGLPDSPGVPKAATSATLTA-PYNDL-EAVKKLFEAN---------KGEIAAVILE 253

Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDI 319
            + G  G I     +L  + +  K+ G L + DEV  GF  A  G+     E  G+ PD+
Sbjct: 254 PVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQ----EYFGITPDL 309

Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKD 374
            T+ K IG G+P+GA     EI E++          T  GNP+   AG   LK +Q+ 
Sbjct: 310 TTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQP 367

Length = 474

>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 88/400 (22%), Positives = 150/400 (37%), Gaps = 73/400 (18%)

Query: 77  HLYSK-----PLN----VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQ 127
           H Y+K     P      +  G   +++D +G  Y++   G+  V  GH +P VV+++   
Sbjct: 17  HTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREA 76

Query: 128 IKR---IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG- 183
           ++        + + L     D AE+    + G   +V F  +G++A   A+ +AR YTG 
Sbjct: 77  LQDGCNFTRPSAIEL-----DAAESFLELIDG-ADMVKFCKNGSDATSAAVRLARAYTGR 130

Query: 184 -----CND--IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG 236
                C D    S  + + G    + G  A      +V    V    N            
Sbjct: 131 DLVARCADHPFFSTDDWFIGTTPMSAGIPA------SVSALTVTFRYN------------ 172

Query: 237 EMYAKDVQDLIDFGTS--GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294
                D+  L        G +A  + E         E   G+L  V +   + G L I D
Sbjct: 173 -----DIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILD 223

Query: 295 EVQAGF---ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV--LTR-- 347
           E+  GF    R     +G     +VPD+    K +GNG  + A+    E  E+  L    
Sbjct: 224 EMITGFRWHMRGAQKLYG-----IVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTD 278

Query: 348 --RNYF--NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD 403
             R +    T G      AA  A + + + + +    H  G+ L   +     ++G+   
Sbjct: 279 RERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDH 338

Query: 404 VRGRGFLLGVEFVT-DRQLKTPAKAETLYIMDKMKEMGVL 442
           VR  G    + + T D   +      TL++ + ++  GVL
Sbjct: 339 VRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRR-GVL 377

Length = 431

>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 65/287 (22%), Positives = 101/287 (35%), Gaps = 93/287 (32%)

Query: 161 VFFTNSGTEANELAIMMA-RLYTGCND--------------------IISLRNAYHGNAA 199
           VFF+++G+ A E+A+ MA R +    D                    +++L  +YHG+  
Sbjct: 430 VFFSDNGSTAIEVALKMAFRKF--IVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTL 487

Query: 200 GTMGATA--------QSNW------------------KFNVVQTGVHHALNPDPYRG--- 230
           G M A A        Q  W                  ++N+       +           
Sbjct: 488 GAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWES 547

Query: 231 ---VFGA--DGEMYAKDVQDLID--------FGTSGHVAGFLSES-IQGVGGIIELAPGY 276
              VF    D    AK  +  I+           +GH+A  + E  + G GG++ + P +
Sbjct: 548 RDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLF 607

Query: 277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAV 335
             A+ +  +      I DEV  G  R G     +E  G  PDI   AK +  G+ PL A 
Sbjct: 608 QRALVQVCRSRKIPVIFDEVFTGLWRLG-VESAWELLGCKPDIACYAKLLTGGLVPLAAT 666

Query: 336 VTTPEIAEVLTRRNYFNTFGG---------------NPV-CTAAGHA 366
           + T E+         F  F G               +P+ C AA  A
Sbjct: 667 LATEEV---------FEAFRGPSKLDALLHGHSYTAHPMGCAAAAKA 704

Length = 817

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 44/197 (22%), Positives = 64/197 (32%), Gaps = 31/197 (15%)

Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM 202
           + +  E LA  +        F  SGT ANE A++        +++I   N +        
Sbjct: 2   LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL--GPGDEVIVDANGHGSR----- 54

Query: 203 GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES 262
                  W              P P       D      DV  L +     +VA  +   
Sbjct: 55  ------YWV-----AAELAGAKPVPVP---VDDAGYGGLDVAILEELKAKPNVALIVITP 100

Query: 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM 322
               GG+  L P  L  + K  K+ G L + D   AG A         E      D+VT 
Sbjct: 101 NTTSGGV--LVP--LKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGG---ADVVTF 153

Query: 323 A--KGIGNGIPLGAVVT 337
           +  K +G G   G V+ 
Sbjct: 154 SLHKNLG-GEGGGVVIV 169

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 65/274 (23%), Positives = 98/274 (35%), Gaps = 39/274 (14%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL V + +     D +G RY D   G      GH    V  ++  Q +R    T +  + 
Sbjct: 58  PLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARR--GLTTMLPSE 115

Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201
             A   E LA +    L       + T+AN   +  AR  TG   I+     YHG     
Sbjct: 116 DAAWVGEELARRF--GLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDV 173

Query: 202 M-----GATAQSNWKFNVVQTGVHHALNPDPYRGV-FGADGEMYAKDVQDLIDFGTSGHV 255
                 G   Q   +  ++             R V F         D+  L      G V
Sbjct: 174 FVDLVDGRPVQ---RPGLLGQVHDLTATT---RVVEF--------NDLAALEAALADGDV 219

Query: 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ------AGFARTGSHFWG 309
           A  L+E      G++   PG+  A+ +  ++ G L + DE         G+ R       
Sbjct: 220 AAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTR------- 272

Query: 310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAE 343
             AHG+ PD + + K I  G+P      + E+AE
Sbjct: 273 --AHGLEPDFLVVGKPIAGGVPCAVYGFSAELAE 304

Length = 453

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 67/381 (17%), Positives = 114/381 (29%), Gaps = 67/381 (17%)

Query: 119 YVVDSIVNQIKRI--QHSTVLYLN-HAIADFAEALASKMPGNLKV-------VFFTNSGT 168
             + ++    K      +  LY     + +  EALA  +  +  +       V F +   
Sbjct: 16  GTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAG 75

Query: 169 EANELAIMMARLYTGCNDIISLRN-AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP 227
              E  I + RL  G   ++       +       G                        
Sbjct: 76  ANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGE-------------------VVR 116

Query: 228 YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287
           Y      D  +    ++  +   T G+    L  S     G +      L  +    K+ 
Sbjct: 117 YPLYSSNDFHLDFDALEAALKEATEGNK-VVLHTSPHNPTGTV-ATLEELEKLLDLAKEH 174

Query: 288 GGLCIADEVQAGFARTGSHFWG---FEAHGVVPDIV--TMAKGIG-NGIPLGAVVTTPEI 341
             L + DE  AGF              A G    +V  + +K  G  G  +G ++    +
Sbjct: 175 NILLLVDEAYAGFVFGSLDAVATRALLAEG-PNLLVVGSFSKAFGLAGWRVGYILGNAAV 233

Query: 342 AEVLT---RRNYFNTFGGNPVCTAAGHAVLKVIQ-----KDKLQNNAHVVGSYLKERLTA 393
              L    R  Y +T        AA    L V       + +++        YL++ L A
Sbjct: 234 ISQLRKLARPFYSSTHLQ-AAAAAALSDPLLVASELEEMRQRIKERRD----YLRDGLEA 288

Query: 394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNV- 452
                 +       GF L             A A+ L      +E+GV V  G  +G   
Sbjct: 289 A-GLSVLPSQ---AGFFLLTGL---DPEAALALAQVLL-----EEVGVYVTPGSSFGGPG 336

Query: 453 -FRITPPLCFTKEDADYLVDV 472
             RIT     T+E+ + L++ 
Sbjct: 337 WLRITVAGG-TEEELEELLEA 356

Length = 357

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 58/223 (26%), Positives = 82/223 (36%), Gaps = 52/223 (23%)

Query: 277 LPAVYKSIKKAGGLCIADEVQA----GFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G 329
           LP +    KK G +   DE  +    G    G   +G     V  DI+  T+ K  G  G
Sbjct: 151 LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDV--DIIMGTLGKAFGAVG 208

Query: 330 IPLGAVVTTPEIAEVLTRRNYFNTF----GGNPVCTAAGHAVLKVIQKD-----KLQNNA 380
              G +  + E+ + L  R+Y   F       P   AA  A L+V+Q       +LQ N 
Sbjct: 209 ---GYIAGSKELIDYL--RSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENV 263

Query: 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF---VTDRQLKTPAKAETLYIMDKMK 437
                YL+  L  L             GF +G      +       PAKA      D + 
Sbjct: 264 ----RYLRRGLKEL-------------GFPVGGSPSHIIPPLIGDDPAKAVAFS--DALL 304

Query: 438 EMGVLVGKGGFYGNV------FRITPPLCFTKEDADYLVDVMD 474
           E G+ V +   Y  V       RI+     TKED D L++ + 
Sbjct: 305 ERGIYV-QAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALK 346

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	480
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	100.0
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
PRK05965	459	hypothetical protein; Provisional	100.0
PRK07678	451	aminotransferase; Validated	100.0
PRK07482	461	hypothetical protein; Provisional	100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK06062	451	hypothetical protein; Provisional	100.0
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07481	449	hypothetical protein; Provisional	100.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07483	443	hypothetical protein; Provisional	100.0
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	100.0
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06148	1013	hypothetical protein; Provisional	100.0
PRK07036	466	hypothetical protein; Provisional	100.0
PRK07480	456	putative aminotransferase; Validated	100.0
PRK06105	460	aminotransferase; Provisional	100.0
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	100.0
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	100.0
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	100.0
PRK06541	460	hypothetical protein; Provisional	100.0
PRK06917	447	hypothetical protein; Provisional	100.0
PRK12403	460	putative aminotransferase; Provisional	100.0
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	100.0
PLN02760	504	4-aminobutyrate:pyruvate transaminase	100.0
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	100.0
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	100.0
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	100.0
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	100.0
PRK06149	972	hypothetical protein; Provisional	100.0
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	100.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	100.0
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	100.0
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	100.0
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK04612	408	argD acetylornithine transaminase protein; Provisi	100.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	100.0
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	100.0
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	100.0
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	100.0
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PLN00144	382	acetylornithine transaminase	100.0
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	100.0
PRK08297	443	L-lysine aminotransferase; Provisional	100.0
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	100.0
PRK03715	395	argD acetylornithine transaminase protein; Provisi	100.0
PRK07046	453	aminotransferase; Validated	100.0
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	100.0
PLN02624	474	ornithine-delta-aminotransferase	100.0
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	100.0
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	100.0
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	100.0
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	100.0
PRK08088	425	4-aminobutyrate aminotransferase; Validated	100.0
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	100.0
PRK01278	389	argD acetylornithine transaminase protein; Provisi	100.0
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	100.0
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	100.0
PRK03244	398	argD acetylornithine aminotransferase; Provisional	100.0
PRK02936	377	argD acetylornithine aminotransferase; Provisional	100.0
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	100.0
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	100.0
PRK02627	396	acetylornithine aminotransferase; Provisional	100.0
PTZ00125	400	ornithine aminotransferase-like protein; Provision	100.0
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	100.0
PRK04260	375	acetylornithine aminotransferase; Provisional	100.0
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	100.0
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	100.0
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	100.0
PRK07505	402	hypothetical protein; Provisional	100.0
PLN02822	481	serine palmitoyltransferase	100.0
PRK13393	406	5-aminolevulinate synthase; Provisional	100.0
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	100.0
PRK09064	407	5-aminolevulinate synthase; Validated	100.0
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	100.0
PRK07179	407	hypothetical protein; Provisional	100.0
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	100.0
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	100.0
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.97
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.97
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.97
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.97
PRK13392	410	5-aminolevulinate synthase; Provisional	99.97
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.96
PRK06225	380	aspartate aminotransferase; Provisional	99.96
PRK07324	373	transaminase; Validated	99.96
PRK07682	378	hypothetical protein; Validated	99.96
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.96
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.96
PLN02955	476	8-amino-7-oxononanoate synthase	99.96
PRK07681	399	aspartate aminotransferase; Provisional	99.96
PLN00175	413	aminotransferase family protein; Provisional	99.96
PRK06108	382	aspartate aminotransferase; Provisional	99.96
PRK06207	405	aspartate aminotransferase; Provisional	99.96
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.96
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.96
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.96
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.96
PRK06290	410	aspartate aminotransferase; Provisional	99.95
PRK08636	403	aspartate aminotransferase; Provisional	99.95
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.95
PRK05764	393	aspartate aminotransferase; Provisional	99.95
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.95
PRK08361	391	aspartate aminotransferase; Provisional	99.95
PRK08960	387	hypothetical protein; Provisional	99.95
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.95
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.95
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.95
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.95
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.95
PLN02187	462	rooty/superroot1	99.95
PRK06348	384	aspartate aminotransferase; Provisional	99.95
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.95
PLN02483	489	serine palmitoyltransferase	99.95
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.95
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.95
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.95
PTZ00433	412	tyrosine aminotransferase; Provisional	99.95
PRK08068	389	transaminase; Reviewed	99.95
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.94
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.94
PRK09148	405	aminotransferase; Validated	99.94
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.94
PLN02656	409	tyrosine transaminase	99.94
PRK12414	384	putative aminotransferase; Provisional	99.94
PRK06107	402	aspartate aminotransferase; Provisional	99.94
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.94
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.94
PRK09082	386	methionine aminotransferase; Validated	99.94
PRK05942	394	aspartate aminotransferase; Provisional	99.94
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.94
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.94
PRK05839	374	hypothetical protein; Provisional	99.94
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.94
PRK07777	387	aminotransferase; Validated	99.94
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.94
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.94
PRK07683	387	aminotransferase A; Validated	99.94
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.94
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.94
PRK05957	389	aspartate aminotransferase; Provisional	99.94
PRK08363	398	alanine aminotransferase; Validated	99.94
PRK08912	387	hypothetical protein; Provisional	99.94
PRK07550	386	hypothetical protein; Provisional	99.94
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.94
PRK08175	395	aminotransferase; Validated	99.94
PRK06855	433	aminotransferase; Validated	99.94
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.94
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.94
PRK07568	397	aspartate aminotransferase; Provisional	99.94
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.93
PTZ00377	481	alanine aminotransferase; Provisional	99.93
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.93
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.93
PRK09105	370	putative aminotransferase; Provisional	99.93
PRK07337	388	aminotransferase; Validated	99.93
PRK03321	352	putative aminotransferase; Provisional	99.93
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.93
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.93
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.93
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.93
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.93
PRK09265	404	aminotransferase AlaT; Validated	99.93
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.93
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.93
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.92
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.92
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.92
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.92
PLN02672	1082	methionine S-methyltransferase	99.92
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.92
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.92
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.92
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.92
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.92
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.91
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.91
PRK06836	394	aspartate aminotransferase; Provisional	99.91
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.91
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.91
PLN02721	353	threonine aldolase	99.91
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.91
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.91
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.91
PRK07908	349	hypothetical protein; Provisional	99.91
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.91
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.91
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.91
PLN02231	534	alanine transaminase	99.91
PRK08354	311	putative aminotransferase; Provisional	99.91
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.91
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.9
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.9
PTZ00376	404	aspartate aminotransferase; Provisional	99.9
PRK09275	527	aspartate aminotransferase; Provisional	99.9
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.9
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.9
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.9
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.89
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.89
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.89
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.89
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.89
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.89
PRK02948	381	cysteine desulfurase; Provisional	99.89
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.88
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.88
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.88
PLN02397	423	aspartate transaminase	99.88
PRK08637	388	hypothetical protein; Provisional	99.88
PRK10534	333	L-threonine aldolase; Provisional	99.87
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.87
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.87
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.87
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.87
PLN02409	401	serine--glyoxylate aminotransaminase	99.87
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.87
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.87
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.86
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.86
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.86
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.86
PLN02368	407	alanine transaminase	99.85
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.85
PLN02651	364	cysteine desulfurase	99.84
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.84
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.83
PRK14012	404	cysteine desulfurase; Provisional	99.82
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.82
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.81
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.79
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.79
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.79
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.79
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.78
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.78
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.78
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.77
PLN02242	418	methionine gamma-lyase	99.77
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.76
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.76
PRK07049	427	methionine gamma-lyase; Validated	99.74
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.74
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.74
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.73
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.72
PRK06767	386	methionine gamma-lyase; Provisional	99.72
PRK07582	366	cystathionine gamma-lyase; Validated	99.72
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.71
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.71
PRK06460	376	hypothetical protein; Provisional	99.7
PRK06234	400	methionine gamma-lyase; Provisional	99.7
PRK08249	398	cystathionine gamma-synthase; Provisional	99.7
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.69
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.69
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.69
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.69
PRK07050	394	cystathionine beta-lyase; Provisional	99.69
PRK08045	386	cystathionine gamma-synthase; Provisional	99.69
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.69
PRK05968	389	hypothetical protein; Provisional	99.68
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.68
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.68
PRK03080	378	phosphoserine aminotransferase; Provisional	99.67
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.67
PRK02769	380	histidine decarboxylase; Provisional	99.67
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.66
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.66
PRK08776	405	cystathionine gamma-synthase; Provisional	99.65
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.65
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.65
PRK07503	403	methionine gamma-lyase; Provisional	99.64
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.64
PRK07811	388	cystathionine gamma-synthase; Provisional	99.63
PRK08574	385	cystathionine gamma-synthase; Provisional	99.63
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.63
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.63
PRK08861	388	cystathionine gamma-synthase; Provisional	99.63
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.62
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.62
PLN03032	374	serine decarboxylase; Provisional	99.62
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.62
PLN02724	805	Molybdenum cofactor sulfurase	99.61
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.61
PRK09028	394	cystathionine beta-lyase; Provisional	99.61
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.6
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.6
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.59
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.59
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.58
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.58
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.58
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.57
PRK08064	390	cystathionine beta-lyase; Provisional	99.56
PRK05967	395	cystathionine beta-lyase; Provisional	99.55
PRK05939	397	hypothetical protein; Provisional	99.55
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.55
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.54
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.54
PLN02509	464	cystathionine beta-lyase	99.54
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.53
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.53
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.52
PRK07671	377	cystathionine beta-lyase; Provisional	99.52
PRK08114	395	cystathionine beta-lyase; Provisional	99.52
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.51
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.5
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.49
PLN02880	490	tyrosine decarboxylase	99.48
PRK04311	464	selenocysteine synthase; Provisional	99.48
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.48
PRK05367	954	glycine dehydrogenase; Provisional	99.47
PRK13237	460	tyrosine phenol-lyase; Provisional	99.47
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.47
PLN02590	539	probable tyrosine decarboxylase	99.47
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.46
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.46
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.45
PRK12566	954	glycine dehydrogenase; Provisional	99.45
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.42
PLN02263	470	serine decarboxylase	99.42
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.42
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.41
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.38
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.38
PRK06434	384	cystathionine gamma-lyase; Validated	99.37
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.34
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.32
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.31
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.28
PLN02452	365	phosphoserine transaminase	99.26
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.26
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.24
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.22
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.21
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.19
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.18
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.17
PRK12462	364	phosphoserine aminotransferase; Provisional	99.13
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.1
PLN02271	586	serine hydroxymethyltransferase	99.07
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.04
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.94
PRK15029	755	arginine decarboxylase; Provisional	98.89
PRK05367	954	glycine dehydrogenase; Provisional	98.89
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	98.88
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.85
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.79
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	98.74
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.72
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.62
PRK13578	720	ornithine decarboxylase; Provisional	98.57
PRK15399	713	lysine decarboxylase LdcC; Provisional	98.53
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.47
PRK15400	714	lysine decarboxylase CadA; Provisional	98.46
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.45
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.45
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.44
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.35
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.31
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.29
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.25
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	98.2
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	98.15
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.13
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	97.98
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.96
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	97.95
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	97.89
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	97.77
PRK12566	954	glycine dehydrogenase; Provisional	97.62
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	97.44
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	97.41
COG4100	416	Cystathionine beta-lyase family protein involved i	96.13
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	95.94
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	91.23
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	85.58

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=100.00  E-value=5.6e-98  Score=704.32  Aligned_cols=422  Identities=64%  Similarity=1.076  Sum_probs=404.2

Q ss_pred             CCCCCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHh
Q 011669           51 SPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (480)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~  130 (480)
                      .|++|.++.+++.+..++++++|.+..++.+|++|++|+|+||+|.+|++|||+++|++++++|||||+|++|+.+|+.+
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~ls~~~~~~~~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~   81 (442)
T KOG1404|consen    2 MPPPYTGPSTDQVLQKRRAFLSPGLTSYYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKK   81 (442)
T ss_pred             CCCccCCcchhhHHHHhhhcCCcceeccccCCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhh
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCc
Q 011669          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (480)
Q Consensus       131 ~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  210 (480)
                      ++|++..|.++...+||++|++.+|.+++.++|+||||||||+||++||.|+++.+||+++++|||.+..++++++.+.|
T Consensus        82 l~H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~  161 (442)
T KOG1404|consen   82 LYHTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPW  161 (442)
T ss_pred             hEEeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccC--CCeeEecCCCCcCCCCCCC-----hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHH
Q 011669          211 KFNVVQ--TGVHHALNPDPYRGVFGAD-----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (480)
Q Consensus       211 ~~~~~~--~g~~~~~~p~~~~~~~~~d-----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  283 (480)
                      +.+++.  +++.+.++|++||++|+++     .+.+.+++++.+....++.+|++|+|+|||.||++.+|++||++++++
T Consensus       162 k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~  241 (442)
T KOG1404|consen  162 KQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKV  241 (442)
T ss_pred             cccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHH
Confidence            998886  4999999999999999876     567889999999887788899999999999999999999999999999


Q ss_pred             HHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCC-ccccCCCcHHHHH
Q 011669          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-YFNTFGGNPVCTA  362 (480)
Q Consensus       284 ~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~-~~~t~~~~~~~~a  362 (480)
                      |+|+|+++|+|||||||||+| ++|+++.+|+.|||+||+|++|+|+|+|+|++++|+++.+.+.. +++||++||++|+
T Consensus       242 v~k~Ggl~IaDEVqtGfGRtG-~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~a  320 (442)
T KOG1404|consen  242 VRKRGGLFIADEVQTGFGRTG-HMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACA  320 (442)
T ss_pred             HHHcCCEEEehhhhhcccccc-ccccccccCCCccHHHHHhhccCCCcceeeecCHHHHHHHHhccccccccCCCchhHH
Confidence            999999999999999999999 99999999999999999999999999999999999999999877 9999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCC-CcCCCCHHHHHHHHHHHHHcCc
Q 011669          363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR-QLKTPAKAETLYIMDKMKEMGV  441 (480)
Q Consensus       363 aa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~Gv  441 (480)
                      +++++|+++++++++++.++++.+|+++|.++.+++++++++||+|+|+++|+++++ ..+.|.......+.+.|+++|+
T Consensus       321 vg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gv  400 (442)
T KOG1404|consen  321 VGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGV  400 (442)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCe
Confidence            999999999999999999999999999999999999999999999999999999998 4555666678889999999999


Q ss_pred             eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                      +++.++.+++++||+||+|+|++|||.+++..
T Consensus       401 lvg~g~i~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  401 LVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             eeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence            99999999999999999999999998888855

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-91  Score=697.23  Aligned_cols=422  Identities=40%  Similarity=0.628  Sum_probs=388.0

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 011669           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (480)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~  134 (480)
                      .++++..++++++.+++..+.... ..|+.+++++|+||||+|||+||||.+|+++.++||+||+|++|+.+|++++.|+
T Consensus        13 ~~~~~~~~~~~r~~~~~~r~~~~~-~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~   91 (447)
T COG0160          13 APGPKALELIERREEALARSYGRF-RFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHT   91 (447)
T ss_pred             CCCcchHHHHHHHHHHhccccccc-cCcceEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcc
Confidence            456788889999999888875542 5699999999999999999999999999999999999999999999999999988


Q ss_pred             ccccCC-hHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcc-
Q 011669          135 TVLYLN-HAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK-  211 (480)
Q Consensus       135 ~~~~~~-~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~-  211 (480)
                      ...+.+ +...+++|+|.+.+|. .++.++|+|||+||||+|||+||.+|++..||+|.++|||+|.+++++|+....+ 
T Consensus        92 ~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~  171 (447)
T COG0160          92 HTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYK  171 (447)
T ss_pred             cCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccc
Confidence            776665 9999999999999997 6899999999999999999999999999999999999999999999999865433 


Q ss_pred             cccc--CCCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHc--cCCCceEEEEEcccCCCCcceeCCCChHHHHHHH
Q 011669          212 FNVV--QTGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (480)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  283 (480)
                      ..+.  ..++.++|+|++||++|..+.    ....+.+++.+..  ..+.++|+||+||+||+||.+++|++||++|+++
T Consensus       172 ~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~  251 (447)
T COG0160         172 AGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKL  251 (447)
T ss_pred             cCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHH
Confidence            2223  256999999999999987432    2334556665543  2356899999999999999999999999999999


Q ss_pred             HHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHH
Q 011669          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA  363 (480)
Q Consensus       284 ~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa  363 (480)
                      |+|||++||+||||+|||||| ++|+++++|+.|||+||||++|+|+|+|+|++++++++ .....+.+||+|||++|++
T Consensus       252 ~~~~gillI~DEVQtG~GRTG-~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNpva~Aa  329 (447)
T COG0160         252 CREHGILLIADEVQTGFGRTG-KMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMD-WPPGGHGGTFGGNPVACAA  329 (447)
T ss_pred             HHHcCCEEEEeccccCCCccc-cchhhhhcCCCCCEEEecccccCCCceeEEeccHHhcc-cCCcccCCCCCcCHHHHHH
Confidence            999999999999999999999 99999999999999999999999999999999999999 7778899999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCcee
Q 011669          364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLV  443 (480)
Q Consensus       364 a~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v  443 (480)
                      ++|+|++++++++.+++.+++++++++|.++.++|+.+++|||.|+|+++++++++.++.|+......+.+.|+++|+++
T Consensus       330 a~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil  409 (447)
T COG0160         330 ALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLL  409 (447)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             eccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          444 GKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       444 ~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..+|.++++|||.||+++|++++|+++++|++++++
T Consensus       410 ~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~  445 (447)
T COG0160         410 LTCGPHGNVLRILPPLTISDEELDEGLDILEEALKE  445 (447)
T ss_pred             eccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999875

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-90  Score=666.04  Aligned_cols=389  Identities=38%  Similarity=0.643  Sum_probs=361.3

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 011669           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~  138 (480)
                      .++...+...+|+.+.   |.+.|+.+++|+|+|+||.+||+||||.+|+++++||||||++++|+++|+++++|.++.|
T Consensus         5 ~~~~~~~~~~~~~~~~---Y~~~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~   81 (404)
T COG4992           5 LTAATIELFMKYLMPT---YGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLF   81 (404)
T ss_pred             cHHHHHHHHHHhhhcc---cCcCceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhccccc
Confidence            4556677777777665   5567899999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcC---CceEEEEcCCcccccccccccccCCCcccccc
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG---CNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      .++...+|+++|++..| ..++|||+|||+||||+|||+||++++   +.+||.|.++|||+|++++++++++.|+..+.
T Consensus        82 ~~~~~~~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~  160 (404)
T COG4992          82 YNEPQAELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFG  160 (404)
T ss_pred             CChHHHHHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCC
Confidence            99999999999999998 789999999999999999999999987   77999999999999999999999998876653


Q ss_pred             C--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          216 Q--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       216 ~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                      +  +|+.++|+.         |    ++.++++++    +++++||+|||||+||+++++++||+++++||++||++||+
T Consensus       161 Pl~~g~~~vpfn---------D----i~al~~ai~----~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~  223 (404)
T COG4992         161 PLLPGFRHVPFN---------D----IEALEAAID----EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLIL  223 (404)
T ss_pred             CCCCCceecCCC---------C----HHHHHHHhc----cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEE
Confidence            3  678777653         4    688999986    38999999999999999999999999999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK  373 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~  373 (480)
                      ||||||+|||| ++|+++++++.|||+|++|++|||+|+|++++++++++.+....|++||+|||++|+++.++|+++.+
T Consensus       224 DEVQtG~GRTG-k~fA~e~~gV~PDI~tlaK~LgGG~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~  302 (404)
T COG4992         224 DEVQTGLGRTG-KLFAYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLE  302 (404)
T ss_pred             eccccCCCccc-hHHHHHHhCCCCCEEEeeccccCCccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc
Confidence            99999999999 89999999999999999999999999999999988888899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEE
Q 011669          374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVF  453 (480)
Q Consensus       374 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  453 (480)
                      +++.+++++++++++++|+++..+++.+.++||+|+|+++++..+.        ....+.+.|.++||++.+.+  .+++
T Consensus       303 e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~--------~a~~~~~~~~~~gvL~~~a~--~~Vi  372 (404)
T COG4992         303 EGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY--------RARDIVRALREEGVLVLPAG--PNVI  372 (404)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcc--------cHHHHHHHHHHCCeEEecCC--CCeE
Confidence            9999999999999999999999999999999999999999996532        25678999999999998876  6799


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          454 RITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||.||+++|++|||+++++|+++++.
T Consensus       373 R~~PpL~i~~eei~~~~~~l~~~l~~  398 (404)
T COG4992         373 RFLPPLVITEEEIDEALDALERALAA  398 (404)
T ss_pred             EecCCccCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999874

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=2.5e-78  Score=597.96  Aligned_cols=411  Identities=35%  Similarity=0.543  Sum_probs=362.9

Q ss_pred             HHHhhhcCCccccc--c-CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCC
Q 011669           65 AKRKTFLSPSLFHL--Y-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLN  140 (480)
Q Consensus        65 ~~~~~~~~~~~~~~--~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~  140 (480)
                      +.+.+|+++.....  + ..|++|++|+|.||||.|||+|||.++|+|+++.||+||++.+|+++|++++.|... .+.+
T Consensus         7 ~~d~~~~whP~t~~~~~~~~~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~   86 (449)
T COG0161           7 AADLSHLWHPFTQMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTH   86 (449)
T ss_pred             hhhhhheeccccccccccccceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCC
Confidence            33667776544322  2 228999999999999999999999999999999999999999999999999988744 4557


Q ss_pred             hHHHHHHHHHHHhCC-CCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCcc-c
Q 011669          141 HAIADFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWK-F  212 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~-~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~-~  212 (480)
                      ....+|+++|++..| +++++|||++|||||||.|||+++.|      ++|.++|+.+++|||.+.+++++++..... .
T Consensus        87 ~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~  166 (449)
T COG0161          87 EPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHA  166 (449)
T ss_pred             chHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhh
Confidence            779999999999999 66999999999999999999999987      246679999999999999999999843322 2


Q ss_pred             c--ccCCCeeEecCCCCcCCCCCCC-hH---HHHHHHHHHHHccCCCceEEEEEcccCCC-CcceeCCCChHHHHHHHHH
Q 011669          213 N--VVQTGVHHALNPDPYRGVFGAD-GE---MYAKDVQDLIDFGTSGHVAGFLSESIQGV-GGIIELAPGYLPAVYKSIK  285 (480)
Q Consensus       213 ~--~~~~g~~~~~~p~~~~~~~~~d-~~---~~~~~le~~i~~~~~~~~a~vi~epi~~~-~G~~~~~~~~l~~l~~l~~  285 (480)
                      .  ....++.+++.|..|+.+...+ .+   .++++||++|..++++++||||+||+++. ||+++||++||++++++|+
T Consensus       167 ~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~  246 (449)
T COG0161         167 FYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICD  246 (449)
T ss_pred             hccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHH
Confidence            2  2346788899998887766332 22   66889999999887789999999997777 9999999999999999999


Q ss_pred             HhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-----CccccCCCcHH
Q 011669          286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFNTFGGNPV  359 (480)
Q Consensus       286 ~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-----~~~~t~~~~~~  359 (480)
                      ||||+||+|||.||||||| ++|+++++|+.|||+|+||++++| +|+|++++++++.+.+...     .|+.||++||+
T Consensus       247 ky~ILlI~DEV~tGFGRTG-~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPl  325 (449)
T COG0161         247 KYGILLIADEVATGFGRTG-KMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPL  325 (449)
T ss_pred             HcCcEEEeecceeCCCcCc-hhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHH
Confidence            9999999999999999999 899999999999999999999999 7999999999999988664     48899999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHH-HHHHHHHHHHH
Q 011669          360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA-ETLYIMDKMKE  438 (480)
Q Consensus       360 ~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~  438 (480)
                      +|++|+++|++++++++.+++++++.+|.++|+++...+|.++++|+.|++.++|++.+..++.|... ....+.+.+++
T Consensus       326 acAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e  405 (449)
T COG0161         326 ACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALE  405 (449)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999997667799999999999999999999887766533 34678888999


Q ss_pred             cCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          439 MGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       439 ~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +|++++|.   ++.+-++||+++|++|||++++++.+++++
T Consensus       406 ~Gl~iRp~---g~~i~~~PPliit~~eid~l~~~l~~al~~  443 (449)
T COG0161         406 RGLLIRPL---GDVIYLMPPLIITREEIDELVDALREALDE  443 (449)
T ss_pred             CCeEEeec---CCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence            99999987   478999999999999999999999998864

>PRK05965 hypothetical protein; Provisional

Probab=100.00  E-value=6.3e-77  Score=612.63  Aligned_cols=415  Identities=30%  Similarity=0.478  Sum_probs=355.9

Q ss_pred             HHHHHHHhhhcCCccccc--c--CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 011669           61 DEILAKRKTFLSPSLFHL--Y--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~--~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~  136 (480)
                      .+++++.+++.......+  .  ..|+++++|+|+||||+|||+||||.+|++++++||+||+|++|+++|++++.+...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~   83 (459)
T PRK05965          4 NSLIELDRAHLIHPVASYRGHEARGVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATG   83 (459)
T ss_pred             HHHHHhhhhccccccccccccccCCCceEEeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCccc
Confidence            345665555544332211  1  247899999999999999999999999999999999999999999999999876544


Q ss_pred             --ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCC
Q 011669          137 --LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQS  208 (480)
Q Consensus       137 --~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~  208 (480)
                        .+.++...+|+++|++.+|.++++|+|++|||||||.|||+||.|      ++|.+||+++++|||++.+++++++.+
T Consensus        84 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~  163 (459)
T PRK05965         84 YFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALP  163 (459)
T ss_pred             ccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCc
Confidence              356888999999999999877899999999999999999999998      457899999999999999999998866


Q ss_pred             Ccccccc--CCCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHH
Q 011669          209 NWKFNVV--QTGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (480)
Q Consensus       209 ~~~~~~~--~~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  282 (480)
                      .++....  ..++..++.|.++++++++|.    ..++++++++++...++++++||+||+|+++|.+++|++||++|++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~  243 (459)
T PRK05965        164 AFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMRE  243 (459)
T ss_pred             hhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHH
Confidence            5544322  245667777877887776553    2345678888875545689999999999999999999999999999


Q ss_pred             HHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC-------CCccccC
Q 011669          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTF  354 (480)
Q Consensus       283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~-------~~~~~t~  354 (480)
                      +|++||++||+|||||||||+| ++|+++++|+.|||+|+||+++|| +|+|++++++++++.+..       ..|++||
T Consensus       244 lc~~~gillI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~  322 (459)
T PRK05965        244 ACRELGILFVADEVITGFGRTG-PLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTY  322 (459)
T ss_pred             HHHHcCCEEEEechhccCccCc-hhhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCC
Confidence            9999999999999999999999 899999999999999999999999 599999999999988753       2478999


Q ss_pred             CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCC---CHHHHHH
Q 011669          355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP---AKAETLY  431 (480)
Q Consensus       355 ~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~---~~~~~~~  431 (480)
                      ++||++|++++++|++++++++.+++++++++++++|+++. +++.+.++||.|+|++++++.+..++.+   .......
T Consensus       323 ~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~  401 (459)
T PRK05965        323 SAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALR-AHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADR  401 (459)
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-cCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHH
Confidence            99999999999999999999999999999999999999985 5899999999999999999865433333   1224567


Q ss_pred             HHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          432 IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       432 ~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.+.|+++||++.+.+  .+++|+.||+++|++||++++++|++++++
T Consensus       402 i~~~~~~~Gll~~~~g--~~~i~~~PpL~it~~ei~~~~~~l~~~l~~  447 (459)
T PRK05965        402 IFDRAYANGLVFRAFG--DGVLGFAPALCCTEGEFDLIFERTRKTLDD  447 (459)
T ss_pred             HHHHHHhCCeEEEecC--CcEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence            8889999999998754  478999999999999999999999999875

>PRK07678 aminotransferase; Validated

Probab=100.00  E-value=9.9e-77  Score=610.43  Aligned_cols=420  Identities=32%  Similarity=0.537  Sum_probs=363.0

Q ss_pred             CHHHHHHHHhhhcCCcccccc-CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 011669           59 SADEILAKRKTFLSPSLFHLY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~  137 (480)
                      +++++++++++++.+....+. ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~   85 (451)
T PRK07678          6 QTDELLAKDEQYVWHGMKPYNPNATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPLT   85 (451)
T ss_pred             CHHHHHHHhhcccCCCccccccCCCeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCccccc
Confidence            567788877777655433233 2489999999999999999999999999999999999999999999999998765555


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCCCcc
Q 011669          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  211 (480)
                      +.++...+|+++|++.+|.. ++|+|+||||||||.|||+||.++      +|.+||.++++|||++.+++++++.+.++
T Consensus        86 ~~~~~~~~lae~l~~~~~~~-~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~  164 (451)
T PRK07678         86 QSHEPAIKLAEKLNEWLGGE-YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRK  164 (451)
T ss_pred             cCCHHHHHHHHHHHHhCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccc
Confidence            67889999999999999864 689999999999999999999986      57899999999999999999998876554


Q ss_pred             cccc--CCCeeEecCCCCcCCCCCCC----hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHH
Q 011669          212 FNVV--QTGVHHALNPDPYRGVFGAD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK  285 (480)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~~d----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~  285 (480)
                      ..+.  .+++..++.|+.++.+|+.+    ...+++.++++++...++++||||+||+|+++|.++|+++||++|+++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~  244 (451)
T PRK07678        165 YKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQ  244 (451)
T ss_pred             cccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence            4332  26888888888888776422    12345667888864345689999999999999999999999999999999


Q ss_pred             HhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC------CccccCCCcH
Q 011669          286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR------NYFNTFGGNP  358 (480)
Q Consensus       286 ~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~------~~~~t~~~~~  358 (480)
                      +||++||+|||||||||+| ++|+++++|+.|||+|+||+++|| +|+|++++++++++.+...      .|++||++||
T Consensus       245 ~~g~llI~DEV~tGfGRtG-~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp  323 (451)
T PRK07678        245 KHGALLISDEVICGFGRTG-KAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNP  323 (451)
T ss_pred             HcCCEEEEeehhhcCCcCc-hhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCH
Confidence            9999999999999999999 799999999999999999999999 6999999999999888642      4789999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCC-CHHHHHHHHHHHH
Q 011669          359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKMK  437 (480)
Q Consensus       359 ~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~-~~~~~~~~~~~l~  437 (480)
                      ++|++++++|++++++++.+++++++++|+++|+++.++++.+.+++|.|+|++++++.+.....| +......++..|+
T Consensus       324 ~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~  403 (451)
T PRK07678        324 AACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACK  403 (451)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888999999999999999999865433333 3345677889999


Q ss_pred             HcCceeeccCc----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          438 EMGVLVGKGGF----YGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       438 ~~Gv~v~~~~~----~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ++||++.+.+.    .++.+||+||+++|++|||+++++|+++++++
T Consensus       404 ~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        404 EKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             HCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence            99999976432    24789999999999999999999999998764

>PRK07482 hypothetical protein; Provisional

Probab=100.00  E-value=4.3e-76  Score=606.77  Aligned_cols=420  Identities=30%  Similarity=0.465  Sum_probs=357.9

Q ss_pred             CCHHHHHHHHhhhcCCcccc---cc---CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhc
Q 011669           58 PSADEILAKRKTFLSPSLFH---LY---SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI  131 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~---~~---~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~  131 (480)
                      .+++++.++.++++++....   +.   ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~   82 (461)
T PRK07482          3 QKIDELLAWDRDHFFHPSTHLGDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKEL   82 (461)
T ss_pred             ccHHHHHHhhhhhccCCcccccccccccCCCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhc
Confidence            45677777666665443321   11   2389999999999999999999999999999999999999999999999998


Q ss_pred             cccc--cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccc
Q 011669          132 QHST--VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMG  203 (480)
Q Consensus       132 ~~~~--~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~  203 (480)
                      .|..  ..+.++...+|+++|++..|.++++|+|+||||||||.|||+||.++      +|.+||+++++|||++.++++
T Consensus        83 ~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s  162 (461)
T PRK07482         83 AYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGS  162 (461)
T ss_pred             CccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhh
Confidence            6543  24678999999999999998778999999999999999999999773      578999999999999999999


Q ss_pred             cccCCCcccccc--CCCeeEecCCCCcCCCCCC-Ch----HHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCCh
Q 011669          204 ATAQSNWKFNVV--QTGVHHALNPDPYRGVFGA-DG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY  276 (480)
Q Consensus       204 ~~~~~~~~~~~~--~~g~~~~~~p~~~~~~~~~-d~----~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  276 (480)
                      +++.+.++..+.  ..++.+++.|..+++++.. ..    ..+++.+++++++..+++++|||+||+||++|+++++++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~y  242 (461)
T PRK07482        163 LTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGY  242 (461)
T ss_pred             ccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHH
Confidence            998765554432  3577777777776655421 11    2246778888864445689999999999999999999999


Q ss_pred             HHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCc-cccccccCHHHHHhhcC-------C
Q 011669          277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTR-------R  348 (480)
Q Consensus       277 l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~-pig~v~~~~~~~~~l~~-------~  348 (480)
                      +++|+++|++||++||+|||||||||+| .+|+++++|+.||++|+||+++||+ |+|++++++++++.+..       .
T Consensus       243 l~~lr~lc~~~giLlI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~  321 (461)
T PRK07482        243 WPAIQAVLKKYDILLIADEVVTGFGRLG-SMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAI  321 (461)
T ss_pred             HHHHHHHHHHhCCEEEEeccccCCCcCc-chhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCcc
Confidence            9999999999999999999999999999 8999999999999999999999995 99999999999987752       2


Q ss_pred             CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCH--
Q 011669          349 NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK--  426 (480)
Q Consensus       349 ~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~--  426 (480)
                      .|++||++||++|++++++|++++++++.+++++++++++++|+++.++++.+.++||.|+|++++++.+...+.|..  
T Consensus       322 ~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~  401 (461)
T PRK07482        322 GHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPA  401 (461)
T ss_pred             ccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChh
Confidence            477999999999999999999999999999999999999999999999999999999999999999986543333311  


Q ss_pred             -HHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          427 -AETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       427 -~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       .....+...|+++||++.+.. .++.+||.||+++|++|||+++++|++++++
T Consensus       402 ~~~~~~i~~~~~~~Gvl~~~~~-~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  454 (461)
T PRK07482        402 LKIGPQVSAAALERGVIARAMP-HGDILGFAPPLVLTRAEADEIVAIAKDAVDE  454 (461)
T ss_pred             hHHHHHHHHHHHHCCcEEecCC-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence             234678889999999986532 2578999999999999999999999999864

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=2.1e-75  Score=600.87  Aligned_cols=418  Identities=29%  Similarity=0.481  Sum_probs=354.3

Q ss_pred             CHHHHHHHHhhhcCCccccc-cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-cccc
Q 011669           59 SADEILAKRKTFLSPSLFHL-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTV  136 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~  136 (480)
                      +..+++++..++..... .+ ...|+++++|+|+||||.|||+||||++|++++++||+||+|++|+++|+++.. +...
T Consensus        23 ~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~  101 (464)
T PRK06938         23 SNSPLLERQSRRESNAR-SYPRRIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTL  101 (464)
T ss_pred             cHHHHHHHHHhhhhhcc-ccccCCCceEEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhccccc
Confidence            44577777665532211 11 245899999999999999999999999999999999999999999999997643 3233


Q ss_pred             ccCChHHHHHHHHHHHhCCCCC---CEEEEe-CCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          137 LYLNHAIADFAEALASKMPGNL---KVVFFT-NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       137 ~~~~~~~~~l~e~L~~~~~~~~---~~v~f~-~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      .+.++...+|+++|.+.+|.++   ++++|+ ||||||||.|||+||.+++|.+||+++++|||++.+++++++...++.
T Consensus       102 ~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~  181 (464)
T PRK06938        102 DLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKK  181 (464)
T ss_pred             ccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccc
Confidence            4678999999999999998654   367665 899999999999999999999999999999999999999987654443


Q ss_pred             ccc--CCCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHH
Q 011669          213 NVV--QTGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI  284 (480)
Q Consensus       213 ~~~--~~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~  284 (480)
                      ...  .+++..+++|+.++++++...    ..+++.++++++..  ..+++++||+||+|+++|.++||++||++|+++|
T Consensus       182 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc  261 (464)
T PRK06938        182 PLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRIT  261 (464)
T ss_pred             cCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence            322  246778888887777765332    22466788888642  1247999999999999999999999999999999


Q ss_pred             HHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHH
Q 011669          285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAG  364 (480)
Q Consensus       285 ~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa  364 (480)
                      ++||+++|+|||||||||+| .+|+++++|+.|||+|+||+++||+|+|++++++++ +.+....+++||++||++|+++
T Consensus       262 ~~~giLlI~DEV~tGfGRtG-~~~a~e~~gv~PDiv~~gKglggG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa  339 (464)
T PRK06938        262 EEAGIPLIVDEIQSGFGRTG-KMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAG  339 (464)
T ss_pred             HHcCCEEEEeccccCCCcCc-HHHHHHhcCCCCCEEEeeccccCCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHH
Confidence            99999999999999999999 899999999999999999999999999999999885 6666566889999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcC-----CC-CHHHHHHHHHHHHH
Q 011669          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK-----TP-AKAETLYIMDKMKE  438 (480)
Q Consensus       365 ~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~-----~~-~~~~~~~~~~~l~~  438 (480)
                      +++|++++++++.+++++++++++++|+++.++++.+.++||.|+|++++++.+..+.     .+ .......+.+.|++
T Consensus       340 ~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (464)
T PRK06938        340 SATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLR  419 (464)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999997653221     11 22345678889999


Q ss_pred             cCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          439 MGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       439 ~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +|+++.+++..++++||.||+++|++|+|+++++|++++.+
T Consensus       420 ~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  460 (464)
T PRK06938        420 RGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAA  460 (464)
T ss_pred             CCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            99999876655789999999999999999999999999865

>PRK06062 hypothetical protein; Provisional

Probab=100.00  E-value=8.1e-76  Score=603.11  Aligned_cols=416  Identities=32%  Similarity=0.512  Sum_probs=359.3

Q ss_pred             HHHHHHHHhhhcCCccccc-cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 011669           60 ADEILAKRKTFLSPSLFHL-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (480)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~  138 (480)
                      +.+.++...+++.+..... ...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.|....+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~   92 (451)
T PRK06062         13 GARAYALDRAHVFHSWSAQGKINPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAH   92 (451)
T ss_pred             hHHHHHhhhhhccccccccccCCCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCcc
Confidence            4456666556654443321 235899999999999999999999999999999999999999999999999987766667


Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc-CC
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QT  217 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-~~  217 (480)
                      .++...+|+++|++..|.++++|+|+||||||||.|||+||.+++|.+||+++++|||++.+++++++.+.++...+ ..
T Consensus        93 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~  172 (451)
T PRK06062         93 ANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRA  172 (451)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCC
Confidence            89999999999999998778999999999999999999999999999999999999999999999987654332222 25


Q ss_pred             CeeEecCCCCcCCCCC--CCh---HHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          218 GVHHALNPDPYRGVFG--ADG---EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       218 g~~~~~~p~~~~~~~~--~d~---~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                      ++..++.|++++++|.  +|.   ..++++++++++...++++++||+||+|+++|.++|+++||++|+++|++||++||
T Consensus       173 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI  252 (451)
T PRK06062        173 GVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLI  252 (451)
T ss_pred             CCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            7788888888887774  232   22467788888654446899999999999999999999999999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeeccccccCc-cccccccCHHHHHhhcCC--CccccCCCcHHHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~-pig~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      +|||||||||+| .+|+++++|+.||++||||+++||+ |+|++++++++++.+...  .+++||++||++|++++++|+
T Consensus       253 ~DEV~tGfGRtG-~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~  331 (451)
T PRK06062        253 ADEVMAGFGRTG-KWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATIN  331 (451)
T ss_pred             eeccccCCCcCc-HHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            999999999999 7899999999999999999999995 999999999999988643  477899999999999999999


Q ss_pred             HhhhhHHHHHHHHHH-HHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC------HHHHHHHHHHHHHcCce
Q 011669          370 VIQKDKLQNNAHVVG-SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA------KAETLYIMDKMKEMGVL  442 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~-~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~------~~~~~~~~~~l~~~Gv~  442 (480)
                      +++++++.+++++++ ++++++|+++.++++.+.+++|.|+|+++++..+..++.|.      ......+.+.|+++||+
T Consensus       332 ~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl  411 (451)
T PRK06062        332 AMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLL  411 (451)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcE
Confidence            999999999999999 69999999999889999999999999999997543322221      12356788899999999


Q ss_pred             eeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          443 VGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       443 v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.+.   ++.+||+||+++|++|||+++++|++++++
T Consensus       412 ~~~~---~~~lrl~ppl~~t~~eid~~~~~l~~~l~~  445 (451)
T PRK06062        412 PFVN---GNRIHVVPPCTVTEDEVREGLAILDAALAV  445 (451)
T ss_pred             Eeec---CCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            8753   478999999999999999999999999875

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3.5e-75  Score=599.14  Aligned_cols=419  Identities=34%  Similarity=0.523  Sum_probs=357.1

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 011669           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (480)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~  134 (480)
                      ++.+++.+++++..+++.+....  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.|.
T Consensus        14 ~~~~~s~~~~~~~~~~~~~~~~~--~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~   91 (443)
T PRK06058         14 IPGPKSQALAERRAAAVAAGVGS--TLPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHT   91 (443)
T ss_pred             CCCccHHHHHHHHHHhhcccccc--CCCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCc
Confidence            44567778888777776554322  3489999999999999999999999999999999999999999999999987654


Q ss_pred             cc-ccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Ccc
Q 011669          135 TV-LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWK  211 (480)
Q Consensus       135 ~~-~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~  211 (480)
                      .. .+.++...+++++|++.+|.. .++++|++||||||+.|+|+||.++++++||+++++|||++.+++++++.. .++
T Consensus        92 ~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~  171 (443)
T PRK06058         92 CFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYK  171 (443)
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccc
Confidence            43 346788999999999999854 468999999999999999999999999999999999999999999988642 233


Q ss_pred             cccc--CCCeeEecCCCCcCCCCC--CChHH----HHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHH
Q 011669          212 FNVV--QTGVHHALNPDPYRGVFG--ADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (480)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~--~d~~~----~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  283 (480)
                      ..+.  ..++..+++|.+++.+..  .+.+.    +.+.+++.+   .++++++||+||+|+++|.++|+++||++|+++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~l  248 (443)
T PRK06058        172 SGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQV---GADNLAAVIIEPIQGEGGFIVPAEGFLPALLEW  248 (443)
T ss_pred             cccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhh---CCCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence            3221  245666666666654321  11112    122333333   246899999999999999999999999999999


Q ss_pred             HHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHH
Q 011669          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA  363 (480)
Q Consensus       284 ~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa  363 (480)
                      |++||+++|+|||||||||+| .+|+++++|+.||++|+||+++||+|+|++++++++++.+....+++||++||++|++
T Consensus       249 c~~~gillI~DEV~tGfgRtG-~~fa~~~~gv~PDiv~~gK~l~~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aa  327 (443)
T PRK06058        249 CRENGVVFIADEVQTGFARTG-AWFACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAA  327 (443)
T ss_pred             HHHcCCEEEEeccccCCCcCh-hhhHHHhcCCCCCEEEEcccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999 7889999999999999999999999999999999999988877788999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCcee
Q 011669          364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLV  443 (480)
Q Consensus       364 a~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v  443 (480)
                      ++++|+.++++++.+++++++++++++|+++.++++.+.+++|.|+|++++++.+. +..++......+.+.|+++||++
T Consensus       328 a~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~Gv~~  406 (443)
T PRK06058        328 ALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPG-TTEPDAELTKALAAAAHAAGVIV  406 (443)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCC-CCCCcHHHHHHHHHHHHHCCeEE
Confidence            99999999999999999999999999999998889999999999999999998653 22344455677888999999999


Q ss_pred             eccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          444 GKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       444 ~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      .+++.+++++||.||+++|+++||+++++|+++++++
T Consensus       407 ~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~  443 (443)
T PRK06058        407 LTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALADL  443 (443)
T ss_pred             eccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence            9877667899999999999999999999999999764

>PRK07481 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-75  Score=599.73  Aligned_cols=396  Identities=33%  Similarity=0.586  Sum_probs=348.2

Q ss_pred             CCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc--ccCChHHHHHHHHHHHhCC-CC
Q 011669           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV--LYLNHAIADFAEALASKMP-GN  157 (480)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~--~~~~~~~~~l~e~L~~~~~-~~  157 (480)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.|...  .+.++...+++++|++.+| .+
T Consensus        24 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~  103 (449)
T PRK07481         24 PPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEG  103 (449)
T ss_pred             CCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCC
Confidence            58999999999999999999999999999999999999999999999999876543  3578999999999999984 55


Q ss_pred             CCEEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCCCcccccc--CCCeeEecCCCCcC
Q 011669          158 LKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYR  229 (480)
Q Consensus       158 ~~~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~g~~~~~~p~~~~  229 (480)
                      +++|+|++|||||||.|||+||.++      +|.+||.++++|||++.+++++++.+.++..+.  .+++..++.|+.++
T Consensus       104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (449)
T PRK07481        104 MRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYR  183 (449)
T ss_pred             CCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccc
Confidence            7899999999999999999999985      678999999999999999999987665543322  26788888888888


Q ss_pred             CCCC-CChH----HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC
Q 011669          230 GVFG-ADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG  304 (480)
Q Consensus       230 ~~~~-~d~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G  304 (480)
                      ++|+ .|.+    .+.+.+|+++....+++++|||+||+|+++|.++++++|+++|+++|++||+++|+|||||||||+|
T Consensus       184 ~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG  263 (449)
T PRK07481        184 NPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG  263 (449)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc
Confidence            8886 2432    2345567777644456899999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-------CccccCCCcHHHHHHHHHHHHHhhhhHH
Q 011669          305 SHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNTFGGNPVCTAAGHAVLKVIQKDKL  376 (480)
Q Consensus       305 ~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-------~~~~t~~~~~~~~aaa~a~L~~i~~~~~  376 (480)
                       .+|+++++++.|||+|+||+++|| +|+|++++++++++.+...       .|++||++||++|++++++|++++++++
T Consensus       264 -~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l  342 (449)
T PRK07481        264 -SWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDL  342 (449)
T ss_pred             -hhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence             899999999999999999999999 5999999999999988532       4789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC---HHHHHHHHHHHHHcCceeeccCcCCCEE
Q 011669          377 QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLYIMDKMKEMGVLVGKGGFYGNVF  453 (480)
Q Consensus       377 ~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  453 (480)
                      .+++++++++++++|+++.++++.+.++||.|+|++++++.+..++.+.   ......+.+.|+++||++.+.+   +.+
T Consensus       343 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g---~~i  419 (449)
T PRK07481        343 PANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSG---TKI  419 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecC---CEE
Confidence            9999999999999999999889999999999999999997654333332   2345678889999999998764   569


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          454 RITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ||+||+++|++|||+++++|+++++++
T Consensus       420 ~l~Ppl~it~~eid~~~~~l~~~l~~~  446 (449)
T PRK07481        420 ILSPPLVIQREDVDRIVDALDAGLSAV  446 (449)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998763

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.4e-75  Score=597.45  Aligned_cols=419  Identities=32%  Similarity=0.504  Sum_probs=359.9

Q ss_pred             CCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc
Q 011669           56 DGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST  135 (480)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~  135 (480)
                      +++++.+++++..+++.+... ....|+++++|+|+||||.|||+||||.+|+++.++||+||+|.+|+++|++++.|..
T Consensus        11 ~~~~s~~~~~~~~~~~~~~~~-~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~   89 (457)
T PRK05639         11 PGPKAKELIEREKRVLSPGIG-VKLFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSM   89 (457)
T ss_pred             CCCCHHHHHHHHHHhhccccC-cCCCCceEEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccc
Confidence            456778888877777655432 1234899999999999999999999999999999999999999999999999986654


Q ss_pred             cc-cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Ccccc
Q 011669          136 VL-YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFN  213 (480)
Q Consensus       136 ~~-~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~  213 (480)
                      .. +.++...+|+++|++.+|.+.++|+|+||||||||.|||+||.++++.+||.++++|||++.+++++++.. .++..
T Consensus        90 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~  169 (457)
T PRK05639         90 IGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRG  169 (457)
T ss_pred             cCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccC
Confidence            43 34688899999999999877789999999999999999999999999999999999999999999887642 23332


Q ss_pred             cc--CCCeeEecCCCCcCCCCCC----ChH----HHHHHHHHHHHc--cCCCceEEEEEcccCCCCcceeCCCChHHHHH
Q 011669          214 VV--QTGVHHALNPDPYRGVFGA----DGE----MYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVY  281 (480)
Q Consensus       214 ~~--~~g~~~~~~p~~~~~~~~~----d~~----~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~  281 (480)
                      +.  .+++..+++|+.++.+|..    +.+    .+++.+++++..  ..++++|+||+||+|+++|.++||++|+++|+
T Consensus       170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~  249 (457)
T PRK05639        170 FSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELK  249 (457)
T ss_pred             CCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHH
Confidence            22  2577888888888766642    222    234556666532  13568999999999999999999999999999


Q ss_pred             HHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHH
Q 011669          282 KSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCT  361 (480)
Q Consensus       282 ~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~  361 (480)
                      ++|++||+++|+|||||||||+| .+|+++++|+.||+++|||+++||+|+|++++++++++ +....+.+|+++||++|
T Consensus       250 ~lc~~~g~llI~DEv~tG~GrtG-~~~a~~~~gv~PDiv~~gK~l~gG~pi~av~~~~~i~~-~~~~~~~~T~~g~p~~~  327 (457)
T PRK05639        250 KLLDEHGILLVMDEVQTGIGRTG-KWFASEWFEVKPDLIIFGKGVASGMGLSGVIGRKELMD-LTSGSALLTPAANPVIS  327 (457)
T ss_pred             HHHHHcCCEEEEechhhccCcCc-hHHHHHhcCCCCCEEEechhhcCCCcceeEEehHHHHh-hcCCCcccCCCcCHHHH
Confidence            99999999999999999999999 78899999999999999999999999999999999998 43445678999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCc
Q 011669          362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGV  441 (480)
Q Consensus       362 aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  441 (480)
                      ++++++|++++++++.+++++++++|+++|+++.++++.+.++||.|+|+++++..+..  .++......+.+.|+++|+
T Consensus       328 aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~--~~~~~~~~~~~~~~~~~Gv  405 (457)
T PRK05639        328 AAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENG--KPDPELTGKICWRAFELGL  405 (457)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCC--CCCHHHHHHHHHHHHhCCe
Confidence            99999999999999999999999999999999998999999999999999999975432  2344456778899999999


Q ss_pred             eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++.+.+..++.+||.||+++|++|+|+++++|++++++
T Consensus       406 ~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~  443 (457)
T PRK05639        406 ILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKD  443 (457)
T ss_pred             EEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence            99876555689999999999999999999999998864

>PRK07483 hypothetical protein; Provisional

Probab=100.00  E-value=4.7e-75  Score=596.13  Aligned_cols=399  Identities=32%  Similarity=0.520  Sum_probs=346.1

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNL  158 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~~  158 (480)
                      ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.+... .+.++...+|+++|++.+|.++
T Consensus        11 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~   90 (443)
T PRK07483         11 ATLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGL   90 (443)
T ss_pred             CCCceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            458999999999999999999999999999999999999999999999998865433 3668999999999999998778


Q ss_pred             CEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCcccccc--CCCeeEecCCCCcCC
Q 011669          159 KVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRG  230 (480)
Q Consensus       159 ~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~g~~~~~~p~~~~~  230 (480)
                      ++|+|+||||||||.|||+||.+      ++|.+||.|+++|||++.+++++++.+.++....  .+++.+++.|..|++
T Consensus        91 ~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~  170 (443)
T PRK07483         91 EHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYRE  170 (443)
T ss_pred             CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccc
Confidence            89999999999999999999998      6788999999999999999999988654443322  246677777766766


Q ss_pred             CCCC-C----hHHHHHHHHHHHHccCCCceEEEEEcccCC-CCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC
Q 011669          231 VFGA-D----GEMYAKDVQDLIDFGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG  304 (480)
Q Consensus       231 ~~~~-d----~~~~~~~le~~i~~~~~~~~a~vi~epi~~-~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G  304 (480)
                      .+.. +    ...+++++++++....++++++||+||+|+ .+|.++++++||++|+++|+|||+++|+|||||||||+|
T Consensus       171 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG  250 (443)
T PRK07483        171 QRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG  250 (443)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc
Confidence            5321 1    122456777766544456899999999998 589999999999999999999999999999999999999


Q ss_pred             CCcccccccCCCcceeeeccccccCc-cccccccCHHHHHhhcCC----CccccCCCcHHHHHHHHHHHHHhhhhHHHHH
Q 011669          305 SHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN  379 (480)
Q Consensus       305 ~~~~~~~~~~~~pDivt~sK~~g~G~-pig~v~~~~~~~~~l~~~----~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~  379 (480)
                       ++|+++++++.|||+|+||+++||+ |+|++++++++++.+...    .|++||++||++|++++++|++++++++.++
T Consensus       251 -~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~  329 (443)
T PRK07483        251 -TLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLAN  329 (443)
T ss_pred             -HHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence             8999999999999999999999996 999999999999888643    4779999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC---HHHHHHHHHHHHHcCceeeccC-----cCCC
Q 011669          380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLYIMDKMKEMGVLVGKGG-----FYGN  451 (480)
Q Consensus       380 ~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~~-----~~~~  451 (480)
                      +++++++|+++|+++.++++.+.++||.|+|++++++.+..++.|.   ......+.+.|+++||++.+.+     ..++
T Consensus       330 ~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~  409 (443)
T PRK07483        330 VRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGD  409 (443)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCC
Confidence            9999999999999998889999999999999999998654333331   2235678899999999997653     2357


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          452 VFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       452 ~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++||.||+++|++|||+++++|+++|++
T Consensus       410 ~l~~~PpL~it~~eid~~~~~l~~~l~~  437 (443)
T PRK07483        410 HVLLAPPFIITAAQIDEIVERLGDAIDA  437 (443)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999875

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=7.3e-75  Score=596.69  Aligned_cols=418  Identities=33%  Similarity=0.530  Sum_probs=352.8

Q ss_pred             CHHHHHHHHhhhcCCccccc-cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-ccc
Q 011669           59 SADEILAKRKTFLSPSLFHL-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STV  136 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~  136 (480)
                      +..+++++..++... ...+ .+.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|+.+..+ .+.
T Consensus        18 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~   96 (459)
T PRK06931         18 TNETYLARQAEFESN-VRSYPRKLPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTL   96 (459)
T ss_pred             chHHHHHHHHhhhhh-ccccccCCCceEEeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhcccccc
Confidence            344677766655322 1112 1458999999999999999999999999999999999999999999999987432 223


Q ss_pred             ccCChHHHHHHHHHHHhCCCCC---CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          137 LYLNHAIADFAEALASKMPGNL---KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       137 ~~~~~~~~~l~e~L~~~~~~~~---~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      .+.++...+|+++|++.+|...   ..+||+||||||||.|||+||.+++|.+||.++++|||++.+++++++...++..
T Consensus        97 ~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~  176 (459)
T PRK06931         97 DLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNA  176 (459)
T ss_pred             ccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccC
Confidence            4668889999999999998532   3557779999999999999999999999999999999999999999876655433


Q ss_pred             cc--CCCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHc--cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHH
Q 011669          214 VV--QTGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK  285 (480)
Q Consensus       214 ~~--~~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~  285 (480)
                      +.  .+++..+++|+.++++|+...    +.+.+.+++.++.  ...+++++||+||+|+++|+++++++||++|+++|+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~  256 (459)
T PRK06931        177 VNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQ  256 (459)
T ss_pred             CCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence            32  368888999999998886322    2222334555542  124579999999999999999999999999999999


Q ss_pred             HhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHH
Q 011669          286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (480)
Q Consensus       286 ~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~  365 (480)
                      +||+++|+|||||||||+| .+|+++++|+.|||+|+||+++||+|+|++++++++ +.+....+++||++||++|++++
T Consensus       257 ~~g~LlI~DEV~tGfGRtG-~~~a~~~~gv~PDivt~gK~l~gG~Pi~av~~~~~~-~~~~~~~~~~T~~gnpla~aaal  334 (459)
T PRK06931        257 KHGILLIVDEVQAGFARTG-KMFAFEHAGIEPDIIVMSKAVGGGLPLAVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGL  334 (459)
T ss_pred             HcCCEEEEecchhcCCcCc-hHHHhhhcCCCCCEEEecccccCCcceeeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHH
Confidence            9999999999999999999 899999999999999999999999999999988775 76766678899999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcC-----CC-CHHHHHHHHHHHHHc
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK-----TP-AKAETLYIMDKMKEM  439 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~-----~~-~~~~~~~~~~~l~~~  439 (480)
                      ++|++++++++.+++++++++++++|+++.++++.+.++||.|+|+++++++++.++     .+ +......+.+.|+++
T Consensus       335 a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (459)
T PRK06931        335 TTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFEN  414 (459)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999999999999997653221     11 233456788899999


Q ss_pred             CceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          440 GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       440 Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||++.+.+..++++||.||+++|++|||+++++|++++++
T Consensus       415 Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  454 (459)
T PRK06931        415 GLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLA  454 (459)
T ss_pred             CcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence            9999876655789999999999999999999999999865

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=3.1e-74  Score=592.09  Aligned_cols=416  Identities=25%  Similarity=0.409  Sum_probs=354.4

Q ss_pred             CCHHHHHHHHhhhcCCcccc---cc-C-CCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc
Q 011669           58 PSADEILAKRKTFLSPSLFH---LY-S-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~---~~-~-~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~  132 (480)
                      ++++++.+...++++.....   ++ . .|+.+++|+|+||||.|||+||||++|++++++||+||+|.+|+.+|++++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~   97 (472)
T PRK08742         18 QTAEHWRQRDLAVLWHPCTQMREHPHTLPLVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELE   97 (472)
T ss_pred             CcHHHHHHhhhcccccCCcccccccccCCCeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCC
Confidence            45667777766665433222   11 1 2578999999999999999999999999999999999999999999999876


Q ss_pred             cccc-ccCChHHHHHHHHHHHhCCC-----CCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCccccccc
Q 011669          133 HSTV-LYLNHAIADFAEALASKMPG-----NLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAG  200 (480)
Q Consensus       133 ~~~~-~~~~~~~~~l~e~L~~~~~~-----~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~  200 (480)
                      |... .+.++...+|+++|++.+|.     ++++|+|+||||||||.|||+||.+      ++|.+||+++++|||++.+
T Consensus        98 ~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~g  177 (472)
T PRK08742         98 QVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIG  177 (472)
T ss_pred             CccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchh
Confidence            6543 46788999999999999875     4679999999999999999999998      5688999999999999999


Q ss_pred             ccccccCCCccccccC--CCeeEecCCCCcCCCCCCChH----HHHHHHHHHHHccCCCceEEEEEcc-cCCCCcceeCC
Q 011669          201 TMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELA  273 (480)
Q Consensus       201 ~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~  273 (480)
                      ++++++.+.++..+.+  .++.++++|+.++++++...+    .+++.++++++.. ++++++||+|| +||++|++++|
T Consensus       178 als~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~iAAvI~EPviqg~gG~~~~p  256 (472)
T PRK08742        178 ALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQS-PGEICALILEPRLQCAGGMRMHH  256 (472)
T ss_pred             hhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhC-CCceEEEEEccccccCCCcccCC
Confidence            9999886655543322  567888888888776654322    2456777777643 46899999999 69999999999


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCc-cccccccCHHHHHhhcC-----
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTR-----  347 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~-pig~v~~~~~~~~~l~~-----  347 (480)
                      ++|+++|+++|++||++||+|||||||||+| .+|+++++|+.|||+|+||+++||+ |+|++++++++++.+..     
T Consensus       257 ~~fl~~lr~lc~~~gillI~DEV~TGfGRtG-~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~  335 (472)
T PRK08742        257 PAYLRRARELCDAHGAFLIADEIATGFGRTG-TLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRER  335 (472)
T ss_pred             HHHHHHHHHHHHHcCCEEEEechhhCCCCCc-cchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccC
Confidence            9999999999999999999999999999999 8999999999999999999999995 99999999999987742     


Q ss_pred             -CCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC-
Q 011669          348 -RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA-  425 (480)
Q Consensus       348 -~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~-  425 (480)
                       ..|++||++||++|++++++|++++++++.++++++++++++.++.+ ++++.+.++||.|+|++++++.+..++.|. 
T Consensus       336 ~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~-~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~  414 (472)
T PRK08742        336 AFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQI-GEHPHVADVRQAGMVVAFELTRGGNKRTPFP  414 (472)
T ss_pred             ccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-hcCCCeeeEeccceEEEEEeccCccccccCC
Confidence             24789999999999999999999999999999999999999877765 568999999999999999998765443331 


Q ss_pred             --HHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          426 --KAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       426 --~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                        ......+.+.|+++||++.+.+   ++|||.||+++|++|||+++++|++++++
T Consensus       415 ~~~~~~~~~~~~~~~~Gll~~~~g---~vi~~~PpL~it~~ei~~~~~~l~~~l~~  467 (472)
T PRK08742        415 PAARVGLHAYRAALARGVVLRPLG---DVLYWMPPYCVDEAQLALLADTTRHAIDE  467 (472)
T ss_pred             chhHHHHHHHHHHHHCCeEEEecC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence              1234668888999999998753   79999999999999999999999999875

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=100.00  E-value=5.4e-75  Score=592.42  Aligned_cols=395  Identities=32%  Similarity=0.530  Sum_probs=340.2

Q ss_pred             HHHHHHHHhhhcCCccccccCC---------CeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHh
Q 011669           60 ADEILAKRKTFLSPSLFHLYSK---------PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (480)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~---------p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~  130 (480)
                      ..++++++++++.+.. .++..         ++++++++|+||||.|||+||||.+|++++++||+||+|++|+.+|+++
T Consensus        28 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~  106 (442)
T TIGR03372        28 NQEVIECFKEHVNPGF-LEYRKSVTAGGDYGAVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAK  106 (442)
T ss_pred             cHHHHHHHhhccCHHH-HHHHHhhhccCCCCeeEEEeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHh
Confidence            3466777666665543 11211         3345777789999999999999999999999999999999999999999


Q ss_pred             ccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc---CCceEEEEcCCcccccccccccccC
Q 011669          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT---GCNDIISLRNAYHGNAAGTMGATAQ  207 (480)
Q Consensus       131 ~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~---~~~~ii~~~~~yhG~~~~~~~~~~~  207 (480)
                      +.+.+..+.++...+|+|+|++.+|.++++++|+||||||||.|+|+||.++   ++.+||+++++|||++.+++++++.
T Consensus       107 l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~  186 (442)
T TIGR03372       107 QPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAK  186 (442)
T ss_pred             CCCcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCC
Confidence            8776655668999999999999999878899999999999999999999996   7889999999999999999999886


Q ss_pred             CCcccccc--CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc--cCCCceEEEEEcccCCCCcceeCCCChHHHHHHH
Q 011669          208 SNWKFNVV--QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (480)
Q Consensus       208 ~~~~~~~~--~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  283 (480)
                      +.++....  .+++.++++|+             .+.+++.++.  ...+++++||+||+|+++|.++||++||++|+++
T Consensus       187 ~~~~~~~~p~~~~~~~~p~~d-------------~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~l  253 (442)
T TIGR03372       187 PAFRKPFMPLLPGFHHVAFGD-------------IEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRAL  253 (442)
T ss_pred             cccCCCCCCCCCCCEEeCCCC-------------HHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHH
Confidence            65543322  24666666543             2344444432  1245899999999999999999999999999999


Q ss_pred             HHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC--CCccccCCCcHHH
Q 011669          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR--RNYFNTFGGNPVC  360 (480)
Q Consensus       284 ~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~--~~~~~t~~~~~~~  360 (480)
                      |++||+++|+|||||||||+| .+|+++++|+.|||+||||++||| +|+|++++++++++.+..  ..+++||++||++
T Consensus       254 c~~~g~llI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~  332 (442)
T TIGR03372       254 CDEFGALLILDEVQTGMGRTG-KMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLA  332 (442)
T ss_pred             HHHcCCEEEEeecccCCCccc-cchhhhhcCCCCCeeeehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHH
Confidence            999999999999999999999 799999999999999999999999 699999999999988843  3578999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC-ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc
Q 011669          361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM  439 (480)
Q Consensus       361 ~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~  439 (480)
                      |++++++|++++++++.+++++++++++++|+++..+++ .+.++||.|+|+++++.++        .....+.+.|+++
T Consensus       333 ~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~--------~~~~~i~~~l~~~  404 (442)
T TIGR03372       333 CAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDN--------EIGYAFAKELFQQ  404 (442)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCCh--------HHHHHHHHHHHHC
Confidence            999999999999999999999999999999999998897 7899999999999999653        2346788999999


Q ss_pred             CceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          440 GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       440 Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      ||++.+.+..++.+||.||+++|++|+|+++++|++++
T Consensus       405 Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       405 NILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             CcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            99998765456899999999999999999999999864

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=6.7e-74  Score=588.62  Aligned_cols=410  Identities=25%  Similarity=0.391  Sum_probs=350.1

Q ss_pred             HHHHHHHhhhcCCcccc---cc-CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 011669           61 DEILAKRKTFLSPSLFH---LY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~---~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~  136 (480)
                      +++.+..++++++....   +. ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.|...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~   91 (453)
T PRK06943         12 DDWVARSLRAVWHPCTQMKHHERLPLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAML   91 (453)
T ss_pred             hhHHHHhhcccccCCcCccccccCCCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccc
Confidence            45666656664333221   12 248999999999999999999999999999999999999999999999999876544


Q ss_pred             -ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCC
Q 011669          137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       137 -~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                       .+.++...+|+++|++..|..+++|+|+||||||||.|||+||.+      ++|.+||+++++|||++.+++++++...
T Consensus        92 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~  171 (453)
T PRK06943         92 AGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVAL  171 (453)
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChh
Confidence             467899999999999999876789999999999999999999765      4688999999999999999999998765


Q ss_pred             ccccccC--CCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHH
Q 011669          210 WKFNVVQ--TGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYK  282 (480)
Q Consensus       210 ~~~~~~~--~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~  282 (480)
                      ++..+.+  .++..+++|+.++.++....    ..++++++++++.. ++++++||+|| +||++|++++|++||++|++
T Consensus       172 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~  250 (453)
T PRK06943        172 FKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAER-AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRA  250 (453)
T ss_pred             hhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhC-CCceEEEEEeccccccCCcccCCHHHHHHHHH
Confidence            5544332  46667777776665554321    22456778788643 56899999999 59999999999999999999


Q ss_pred             HHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC------CCccccCC
Q 011669          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR------RNYFNTFG  355 (480)
Q Consensus       283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~------~~~~~t~~  355 (480)
                      +|++||++||+|||||||||+| .+|+++++|+.|||+|+||+++|| +|+|++++++++++.+..      ..+++||+
T Consensus       251 lc~~~gillI~DEV~TG~GRtG-~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~  329 (453)
T PRK06943        251 LCDRYGVHLIADEIAVGCGRTG-TFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYT  329 (453)
T ss_pred             HHHHcCCEEEeechhhCCCCCc-chhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCC
Confidence            9999999999999999999999 899999999999999999999999 599999999999988753      13789999


Q ss_pred             CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHH
Q 011669          356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK  435 (480)
Q Consensus       356 ~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  435 (480)
                      +||++|++++++|++++++++.+++++++++++++|+++. +++.+.++||.|+|++++++.+.   .+.......+.+.
T Consensus       330 gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gvel~~~~---~~~~~~~~~i~~~  405 (453)
T PRK06943        330 GNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLA-AHPQVRHLRQRGTIFAFDVALDG---DAARTFSRRFFEA  405 (453)
T ss_pred             CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-cCCCEEeEeccccEEEEEEccCC---CcchHHHHHHHHH
Confidence            9999999999999999999999999999999999999985 57888999999999999997542   1222345678889


Q ss_pred             HHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          436 MKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       436 l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |+++||++.+.+   +.+||+||+++|++|||+++++|++++++
T Consensus       406 ~~~~Gll~~~~g---~~l~~~Ppl~it~~eid~~~~~l~~al~~  446 (453)
T PRK06943        406 ALERELLLRPIG---TTVYLMPPYVLDDDEIAWLAERTRATLDA  446 (453)
T ss_pred             HHHCCcEEEecC---CEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence            999999998754   67999999999999999999999999875

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=9e-74  Score=589.36  Aligned_cols=417  Identities=29%  Similarity=0.474  Sum_probs=358.7

Q ss_pred             CCHHHHHHHHhhhcCCccc--ccc--CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc
Q 011669           58 PSADEILAKRKTFLSPSLF--HLY--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH  133 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~--~~~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~  133 (480)
                      -++.++.++++++++....  ..+  ..|+++++|+|+||||.|||+||||++|++++++||+||+|++|+.+|++++.|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~   90 (460)
T PRK06916         11 YTYEELSEKNKAYVWHPFTQMKDYLEEDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAH   90 (460)
T ss_pred             CChHHHHHHHhhccccccccccccccCCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCC
Confidence            3456788877777654332  112  458999999999999999999999999999999999999999999999999876


Q ss_pred             ccc-ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCccccccccccccc
Q 011669          134 STV-LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATA  206 (480)
Q Consensus       134 ~~~-~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~  206 (480)
                      ... .+.++...+|+++|++.+|.++++|+|+||||||||.|||+||.+      ++|.+||.++++|||++.+++++++
T Consensus        91 ~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~  170 (460)
T PRK06916         91 STLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGA  170 (460)
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccC
Confidence            544 467899999999999999877789999999999999999999985      6789999999999999999999998


Q ss_pred             CCCccccccC--CCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHccCCCceEEEEEcc-cCCCCcceeCCCChHHH
Q 011669          207 QSNWKFNVVQ--TGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPA  279 (480)
Q Consensus       207 ~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~  279 (480)
                      .+.++..+.+  .++..+++|+.++++++.+.    +.+++.++++++.. ++++++||+|| +|+++|+++++++||++
T Consensus       171 ~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~iAAvi~EP~iqg~gG~~~~~~~fl~~  249 (460)
T PRK06916        171 IDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEK-HEEIAAIIVEPLVQGAGGMITMPKGYLKG  249 (460)
T ss_pred             CcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhC-CCcEEEEEEeccccCCCCcccCCHHHHHH
Confidence            6655543322  56777888887877665432    23456778888643 46899999999 79999999999999999


Q ss_pred             HHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC-------CCcc
Q 011669          280 VYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYF  351 (480)
Q Consensus       280 l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~-------~~~~  351 (480)
                      |+++|++||+++|+|||||||||+| .+|+++++|+.|||+|+||+++|| +|+|++++++++++.+..       ..++
T Consensus       250 lr~lc~~~g~llI~DEV~TG~GRtG-~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~  328 (460)
T PRK06916        250 LRNLCTKYNVLFITDEVATGFGRTG-KMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHG  328 (460)
T ss_pred             HHHHHHHcCCEEEeechhhCCCcCc-hhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccC
Confidence            9999999999999999999999999 899999999999999999999999 599999999999987742       2467


Q ss_pred             ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCH---HH
Q 011669          352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK---AE  428 (480)
Q Consensus       352 ~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~---~~  428 (480)
                      +||++||++|++++++|++++++++.++++++++++++.|+++.+ ++.+.++||.|+|++++++.+..++.+..   ..
T Consensus       329 ~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~-~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~  407 (460)
T PRK06916        329 HSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-LKHVGDIRQLGLMVGIELVKNKETKEPFEWTERV  407 (460)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEeecCCceeeEEeecccccccCCCchhhH
Confidence            899999999999999999999999999999999999999999964 88899999999999999987654443321   23


Q ss_pred             HHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          429 TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       429 ~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ...+.+.|+++||++.+.+   +.+||.||+++|++|||+++++|+++++++
T Consensus       408 ~~~i~~~~~~~Gvl~~~~g---~~l~~~Ppl~it~~~id~~~~~l~~~l~~~  456 (460)
T PRK06916        408 GVQVCKRSRELGMLTRPLG---NTIVFMPPLASTIDELDEMLRILYKAISDV  456 (460)
T ss_pred             HHHHHHHHHHCCeEEEecC---CEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            4578889999999998753   789999999999999999999999998753

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=9.1e-74  Score=589.04  Aligned_cols=392  Identities=26%  Similarity=0.436  Sum_probs=344.3

Q ss_pred             CeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCCCCE
Q 011669           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNLKV  160 (480)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~~~~  160 (480)
                      |+.+++|+|+||||.|||+||||.+|+++.++||+||+|.+|+++|++++.|... .+.++...+|+++|++.+|.++++
T Consensus        30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~  109 (466)
T PRK07030         30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSR  109 (466)
T ss_pred             CceEEeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCE
Confidence            4789999999999999999999999999999999999999999999999876554 567899999999999999877889


Q ss_pred             EEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCCCC
Q 011669          161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVF  232 (480)
Q Consensus       161 v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~~  232 (480)
                      |+|+||||||||.|||+||.+      +++.+||+++++|||++.+++++++.+.++..+.+  .++..+++|+.+++++
T Consensus       110 v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~  189 (466)
T PRK07030        110 CFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPE  189 (466)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCcccccc
Confidence            999999999999999999987      56889999999999999999999886655443322  4677788888777766


Q ss_pred             CCChH----HHHHHHHHHHHccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCc
Q 011669          233 GADGE----MYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF  307 (480)
Q Consensus       233 ~~d~~----~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~  307 (480)
                      +....    .++++++++++.. ++++++||+|| +|+++|.++++++|+++|+++|++||+++|+|||||||||+| .+
T Consensus       190 ~~~~~~~~~~~l~~le~~~~~~-~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG-~~  267 (466)
T PRK07030        190 GMSWEEHSRRMFAHMEQTLAEH-HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG-TM  267 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-CCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccc-cc
Confidence            54322    2356678888643 56899999999 799999999999999999999999999999999999999999 89


Q ss_pred             ccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC-------CCccccCCCcHHHHHHHHHHHHHhhhhHHHHH
Q 011669          308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN  379 (480)
Q Consensus       308 ~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~-------~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~  379 (480)
                      |+++++|+.|||+||||+++|| +|+|++++++++++.+..       ..|++||++||++|++++++|++++++++.++
T Consensus       268 ~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~  347 (466)
T PRK07030        268 FACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIEN  347 (466)
T ss_pred             hHHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999999999999999999999 599999999999988742       24789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC---HHHHHHHHHHHHHcCceeeccCcCCCEEEEe
Q 011669          380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLYIMDKMKEMGVLVGKGGFYGNVFRIT  456 (480)
Q Consensus       380 ~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~  456 (480)
                      +++++++++++|+++. +++.+.++||.|+|++++++.+..++.|.   ......+.+.|+++||++.+.+   +.+||.
T Consensus       348 ~~~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g---~~i~~~  423 (466)
T PRK07030        348 NRALARRMAEATAHLA-DHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLG---SVVYFL  423 (466)
T ss_pred             HHHHHHHHHHHHHHHh-cCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecC---CEEEEE
Confidence            9999999999999985 68899999999999999998654433332   1224568889999999998753   689999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhh
Q 011669          457 PPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       457 p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||+++|++||++++++|++++++
T Consensus       424 Ppl~it~~eid~~~~~l~~al~~  446 (466)
T PRK07030        424 PPYVITPEQIDFLAEVASEGIDI  446 (466)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-73  Score=586.62  Aligned_cols=416  Identities=26%  Similarity=0.457  Sum_probs=354.3

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 011669           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (480)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~  134 (480)
                      +++|+++++++...++....... .+.|+++++|+|+||||.|||+||||+ |.+++++||+||+|++|+.+|++++.+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~a~G~~l~D~dG~~ylD~~-g~~~~~lGh~~p~v~~Ai~~ql~~~~~~  106 (459)
T PRK06082         29 MNDERTQALLKRDSEVFLHQAMS-TPCLDVLASAEGIYIEDVDGKKYMDFH-GNNVHQLGYGHPHVIEKVKEQMAKLPFS  106 (459)
T ss_pred             CCCcchHHHHHHHHHHhcccccC-CCCCceEEeeeeeEEEECCCCEEEEcc-cHhhcccCCCCHHHHHHHHHHHHhCCCc
Confidence            34455666665444443222111 234799999999999999999999997 4588999999999999999999998776


Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ...+.++...+|+++|++.+|..+++++|++||+||||.|+|+||.++++.+||+++++|||++.+++++++.+.++..+
T Consensus       107 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~  186 (459)
T PRK06082        107 PRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGM  186 (459)
T ss_pred             cCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCC
Confidence            55677999999999999999876789999999999999999999999999999999999999999999998866555333


Q ss_pred             c--CCCeeEecCCCCcCCCCCCCh---HHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669          215 V--QTGVHHALNPDPYRGVFGADG---EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       215 ~--~~g~~~~~~p~~~~~~~~~d~---~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                      .  .+++..++.|+.++++|++..   ..+++.++++++.  .+++++||+||+||++ .++++++||++|+++|++||+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~~~g~  263 (459)
T PRK06082        187 GPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK--EGGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNV  263 (459)
T ss_pred             CCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc--CCCEEEEEECCccCCC-CcCCCHHHHHHHHHHHHHcCC
Confidence            2  267888888888888775321   2345678888864  3489999999999985 667899999999999999999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-CccccCCCcHHHHHHHHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-NYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-~~~~t~~~~~~~~aaa~a~  367 (480)
                      ++|+|||||||||+| .+|+++++|+.||++|+||+++|| +|+|++++++++++.+... .+ +||++||++|++++++
T Consensus       264 llI~DEV~tG~GRtG-~~fa~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~~~~-~T~~gnpl~~aaa~a~  341 (459)
T PRK06082        264 LLIIDEIPNGMGRTG-EWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGH-YTHEKSPLGCAAALAT  341 (459)
T ss_pred             EEEEechhhCCCccc-hhhHhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhccCCCCC-CCCCcCHHHHHHHHHH
Confidence            999999999999999 899999999999999999999999 5999999999988655322 24 7999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG  447 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  447 (480)
                      |++++++++.+++++++++|+++|+++.++++.+.++||.|+|++++++.+..++.+.......+...|+++||++.+.+
T Consensus       342 L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~  421 (459)
T PRK06082        342 IEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQ  421 (459)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecC
Confidence            99999889999999999999999999999999999999999999999986544444444456678889999999998753


Q ss_pred             cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          448 FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       448 ~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                        ++++||+||+++|++|||+++++|++++.+
T Consensus       422 --~~~i~~~Ppl~it~~eid~~~~~l~~~l~~  451 (459)
T PRK06082        422 --GNVIQLSPPLIITREELTQALAILEEAIAK  451 (459)
T ss_pred             --CCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence              589999999999999999999999999865

>PRK06148 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-73  Score=634.10  Aligned_cols=417  Identities=46%  Similarity=0.747  Sum_probs=366.7

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 011669           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~  138 (480)
                      +..++++++++++.+....+|+.|+++++|+|+||||+|||+||||.+|+  .++||+||+|++|+.+|++++.+ ...+
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~-~~~~  660 (1013)
T PRK06148        584 DKAEILRERKEHLLPNLSISYSDPIKFVRGWGVWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQAARLNT-NTRY  660 (1013)
T ss_pred             CHHHHHHHHHHhcCcccccccCCCceEEEeeecEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHHhhcCC-cCCc
Confidence            34566777888888877666788999999999999999999999999985  78999999999999999998733 2357


Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc-c--
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV-V--  215 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~-~--  215 (480)
                      .++...+|+++|++.+|.++++|+|+||||||||+|||+||.+||+.+||+++++|||++.+++++++.. ++... +  
T Consensus       661 ~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~-~~~~~~~~~  739 (1013)
T PRK06148        661 LHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYK-FNRKGGKGR  739 (1013)
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchh-hcccCCCCC
Confidence            7999999999999999977899999999999999999999999999999999999999999999987632 22221 1  


Q ss_pred             CCCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHc--cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669          216 QTGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                      ..++..++.|+.++++|+.+.    ..+.++++++++.  ..++++|+||+||+||++|.+++|++||++|+++|++||+
T Consensus       740 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~  819 (1013)
T PRK06148        740 PDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGG  819 (1013)
T ss_pred             CCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCC
Confidence            245667778888888886321    2345567766652  2246899999999999999999999999999999999999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCC-ccccCCCcHHHHHHHHHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-YFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~-~~~t~~~~~~~~aaa~a~L  368 (480)
                      ++|+|||||||||+|..+|+++++|+.|||+||||++|||+|+|++++++++++.+.... +++||++||++|++++++|
T Consensus       820 llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lggG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L  899 (1013)
T PRK06148        820 VCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVL  899 (1013)
T ss_pred             EEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccCCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHH
Confidence            999999999999999448999999999999999999999999999999999999887653 7899999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF  448 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  448 (480)
                      ++++++++.+++++++++|+++|+++.++++.+++++|.|+|++++++.+..++.|+......+.+.|+++||++.+.+.
T Consensus       900 ~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~  979 (1013)
T PRK06148        900 DIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGP  979 (1013)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCC
Confidence            99999999999999999999999999999999999999999999999876655556656677899999999999998776


Q ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          449 YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       449 ~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .++++||.||+++|+++||+++++|++++++
T Consensus       980 ~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148        980 HDNVLKIRPPLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred             CCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            7799999999999999999999999999875

>PRK07036 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-73  Score=587.75  Aligned_cols=413  Identities=31%  Similarity=0.501  Sum_probs=352.1

Q ss_pred             HHHHHHhhhcCCccccc--c--CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 011669           62 EILAKRKTFLSPSLFHL--Y--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~~--~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~  137 (480)
                      ++++..++++++.....  +  ..|+++++|+|+||||+|||+||||++|++++++||+||+|++|+.+|++++.|.+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~   89 (466)
T PRK07036         10 ALAQADKRHLLHPWHDFSSLGKEGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPF   89 (466)
T ss_pred             HHHHHhhcccccCccCccccccCCCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccc
Confidence            44455556654443221  1  2489999999999999999999999999999999999999999999999997665432


Q ss_pred             --cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCC
Q 011669          138 --YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       138 --~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                        +.++...+|+++|++..|.++++|+|+||||||||.|||+||.+      ++|.+||.++++|||++.+++++++.+.
T Consensus        90 ~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~  169 (466)
T PRK07036         90 GDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAA  169 (466)
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCc
Confidence              57899999999999999887899999999999999999999988      4578999999999999999999988665


Q ss_pred             cccccc--CCCeeEecCCCCcCCCCCCChH----HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHH
Q 011669          210 WKFNVV--QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (480)
Q Consensus       210 ~~~~~~--~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  283 (480)
                      ++..+.  ..++.+++.|+.++++++....    .+.+.+++.+....++++|+||+||+|+++|.++|+++|+++|+++
T Consensus       170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~l  249 (466)
T PRK07036        170 DRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREI  249 (466)
T ss_pred             ccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHH
Confidence            544332  2467778888887776653322    2345677777654467899999999999999999999999999999


Q ss_pred             HHHhCCEEEEcccccCccccCCCccccc-ccCCCcceeeeccccccC-ccccccccCHHHHHhhcC-------CCccccC
Q 011669          284 IKKAGGLCIADEVQAGFARTGSHFWGFE-AHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTF  354 (480)
Q Consensus       284 ~~~~gillI~DEv~tgfgr~G~~~~~~~-~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~-------~~~~~t~  354 (480)
                      |+|||+++|+|||||||||+| ++|+++ ++|+.|||+|+||+++|| +|+|++++++++++.+..       ..+++||
T Consensus       250 c~~~g~llI~DEV~tGfGRtG-~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~  328 (466)
T PRK07036        250 CRRYDILYISDEVVTGFGRLG-HFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTY  328 (466)
T ss_pred             HHHcCCEEEEeechhCCCcCc-hhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCC
Confidence            999999999999999999999 789988 789999999999999999 599999999999998753       2467899


Q ss_pred             CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC---HHHHHH
Q 011669          355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLY  431 (480)
Q Consensus       355 ~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~  431 (480)
                      ++||++|++++++|++++++++.+++++++++|+++|+++ ++++.+.++||.|+|++++|+.+..++.+.   ......
T Consensus       329 ~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~  407 (466)
T PRK07036        329 SGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASL-RELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQR  407 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-ccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHH
Confidence            9999999999999999999999999999999999999987 568999999999999999998654333332   234567


Q ss_pred             HHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          432 IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       432 ~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.+.|+++||++.+.+   +.+||+||+++|++|||+++++|++++++
T Consensus       408 ~~~~~~~~Gvl~~~~~---~~~~l~Ppl~it~~~id~~~~~l~~al~~  452 (466)
T PRK07036        408 IDRHCQERGLLVRPLE---HLCVLSPPLIITRAQIDEIVAILRAAIEE  452 (466)
T ss_pred             HHHHHHHCCcEEeecC---CEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence            8889999999998653   68999999999999999999999998864

>PRK07480 putative aminotransferase; Validated

Probab=100.00  E-value=1.4e-73  Score=586.67  Aligned_cols=414  Identities=29%  Similarity=0.420  Sum_probs=349.2

Q ss_pred             HHHHHHHhhhcCCcccc---cc-CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 011669           61 DEILAKRKTFLSPSLFH---LY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~---~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~  136 (480)
                      .++++...+++.+....   +. ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.|...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~   87 (456)
T PRK07480          8 AELQALDAAHHLHPFSDMKALNEKGSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNT   87 (456)
T ss_pred             HHHHhhhhcccccCcccccccccCCCceEEeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccc
Confidence            45565555554332221   11 247899999999999999999999999999999999999999999999999866433


Q ss_pred             --ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCC
Q 011669          137 --LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQS  208 (480)
Q Consensus       137 --~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~  208 (480)
                        .+.++...+|+++|++.+|.++++|+|++|||||||.|||+||.+      ++|.+||.++++|||++.+++++++..
T Consensus        88 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~  167 (456)
T PRK07480         88 FFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMK  167 (456)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCCh
Confidence              367899999999999999877889999999999999999999998      467899999999999999999998765


Q ss_pred             Ccccccc--CCCeeEecCCCCcCCCCCCChHH----HHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHH
Q 011669          209 NWKFNVV--QTGVHHALNPDPYRGVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (480)
Q Consensus       209 ~~~~~~~--~~g~~~~~~p~~~~~~~~~d~~~----~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  282 (480)
                      .++...+  .+++.+++.|..++++++.+...    +.+.+++.+....++++++||+||+|+++|++++|++||++|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~  247 (456)
T PRK07480        168 YMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQR  247 (456)
T ss_pred             hhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHH
Confidence            4443322  35777788888787766433222    24566655544445689999999999999999999999999999


Q ss_pred             HHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCc-cccccccCHHHHHhhc--C--CCccccCCCc
Q 011669          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLT--R--RNYFNTFGGN  357 (480)
Q Consensus       283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~-pig~v~~~~~~~~~l~--~--~~~~~t~~~~  357 (480)
                      +|++||++||+|||||||||+| .+|+++++|+.|||+||||+++||+ |+|++++++++++.+.  .  ..+++||++|
T Consensus       248 lc~~~g~llI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gn  326 (456)
T PRK07480        248 ICRKYDILLVADEVICGFGRTG-EWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGH  326 (456)
T ss_pred             HHHHcCCEEEEechhhCCCcCc-chhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcC
Confidence            9999999999999999999999 8999999999999999999999995 9999999999999883  2  2478999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC--H-HHHHHHH
Q 011669          358 PVCTAAGHAVLKVIQKDKLQNNA-HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA--K-AETLYIM  433 (480)
Q Consensus       358 ~~~~aaa~a~L~~i~~~~~~~~~-~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~--~-~~~~~~~  433 (480)
                      |++|++++++|++++++++.+++ ++++++++++|+++ ++++.+.++||.|+|++++++++...+.+.  . .....+.
T Consensus       327 pl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l-~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~  405 (456)
T PRK07480        327 PVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLREL-ADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICR  405 (456)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-hcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHH
Confidence            99999999999999999999999 69999999999996 578999999999999999998654333221  1 1235677


Q ss_pred             HHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          434 DKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       434 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.|+++||++.+.   ++.+||+||+++|++|||+++++|++++.+
T Consensus       406 ~~~~~~Gll~~~~---~~~l~~~Ppl~it~~eid~~~~~l~~al~~  448 (456)
T PRK07480        406 DHCFANGLIMRAV---GDRMIISPPLVITHAEIDELVEKARKALDA  448 (456)
T ss_pred             HHHHHCCcEEeec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            8899999999764   478999999999999999999999999865

>PRK06105 aminotransferase; Provisional

Probab=100.00  E-value=3.2e-73  Score=585.31  Aligned_cols=414  Identities=28%  Similarity=0.448  Sum_probs=351.3

Q ss_pred             HHHHHHHhhhcCCcccc---cc-CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 011669           61 DEILAKRKTFLSPSLFH---LY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~---~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~  136 (480)
                      .++++++.+++++....   +. ..|+++++|+|+|+||+|||+||||++|++++++||+||+|++|+.+|++++.+...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~   85 (460)
T PRK06105          6 NSLEARDIAYHLHPYTNARRHEEEGPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHT   85 (460)
T ss_pred             HHHHHhhhhhcccCCcccccccccCCceEEeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeec
Confidence            34666666665433321   11 358999999999999999999999999999999999999999999999999765322


Q ss_pred             --ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCC
Q 011669          137 --LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQS  208 (480)
Q Consensus       137 --~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~  208 (480)
                        .+.++...+|+++|++.+|.++++|+|+||||||||+|||+||.+      +++.+||.++++|||++.+++++++.+
T Consensus        86 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~  165 (460)
T PRK06105         86 FSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLP  165 (460)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCc
Confidence              467899999999999999877889999999999999999999876      468899999999999999999998765


Q ss_pred             Cccccc--cCCCeeEecCCCCcCCCCC-CC----hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHH
Q 011669          209 NWKFNV--VQTGVHHALNPDPYRGVFG-AD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVY  281 (480)
Q Consensus       209 ~~~~~~--~~~g~~~~~~p~~~~~~~~-~d----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~  281 (480)
                      .++..+  ...++.++++|+.+++... ..    ...+.+++++++....++++++||+||+|+++|.++++++||++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr  245 (460)
T PRK06105        166 NNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQ  245 (460)
T ss_pred             ccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHH
Confidence            444332  2357778888876654211 11    1224577888886444568999999999999999999999999999


Q ss_pred             HHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-------Ccccc
Q 011669          282 KSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNT  353 (480)
Q Consensus       282 ~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-------~~~~t  353 (480)
                      ++|++||+++|+|||||||||+| ++|+++++++.|||+|+||+++|| +|+|++++++++++.+...       .|.+|
T Consensus       246 ~lc~~~~~llI~DEv~tG~GRtG-~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T  324 (460)
T PRK06105        246 AVLRKYDILLVADEVICGFGRTG-NMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFT  324 (460)
T ss_pred             HHHHHcCCeEEEeccccCCCcCc-hhhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCC
Confidence            99999999999999999999999 799999999999999999999998 6999999999999887531       36799


Q ss_pred             CCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC---HHHHH
Q 011669          354 FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETL  430 (480)
Q Consensus       354 ~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~  430 (480)
                      |++||++|++++++|++++++++.+++++++++|+++|+++ ++++.+.++||.|+|++++++.+..++.+.   .....
T Consensus       325 ~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~  403 (460)
T PRK06105        325 ASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL-ADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGA  403 (460)
T ss_pred             CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHH
Confidence            99999999999999999999999999999999999999999 789999999999999999998654333331   22346


Q ss_pred             HHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          431 YIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       431 ~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+.+.|+++||++.+.   ++++||+||+++|++|||+++++|++++++
T Consensus       404 ~i~~~~~~~Gvl~~~~---g~~i~l~Ppl~it~~eid~~~~~l~~~l~~  449 (460)
T PRK06105        404 RANAAAHEHGVISRAM---GDTLAFCPPLIITAAQVDEMVDRFGRALDD  449 (460)
T ss_pred             HHHHHHHHCCeEEEec---CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            7888899999999875   379999999999999999999999999865

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-73  Score=585.64  Aligned_cols=397  Identities=32%  Similarity=0.503  Sum_probs=344.1

Q ss_pred             HHHHHHHhhhcCCccccc-------cCCCeEEEeeec-cEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc
Q 011669           61 DEILAKRKTFLSPSLFHL-------YSKPLNVVDGKM-QYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~-------~~~p~~~~~g~G-~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~  132 (480)
                      .+.++.++.++.|....+       ...|+++.+|+| +||||.|||+||||.+|+++.++||+||+|++|+.+|++++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~  115 (459)
T PRK11522         36 REVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQP  115 (459)
T ss_pred             HHHHHHHHhhcCHHHHHhhhcccccCCCCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCc
Confidence            456676777776543111       134679999999 999999999999999999999999999999999999999987


Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcC---CceEEEEcCCcccccccccccccCCC
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG---CNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~---~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      +.+..+.++...+|+++|++.+|.++++|+|+||||||||.|||+||.+++   |.+||.++++|||++.+++++++...
T Consensus       116 ~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~  195 (459)
T PRK11522        116 LHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKST  195 (459)
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcc
Confidence            766566789999999999999998788999999999999999999999985   67899999999999999999988665


Q ss_pred             ccccccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc--cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHH
Q 011669          210 WKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK  285 (480)
Q Consensus       210 ~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~  285 (480)
                      ++.+..+  +++..++++         |    .+++++.++.  ..++++++||+||+|+++|.++||++||++|+++|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~---------d----~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~  262 (459)
T PRK11522        196 FRKPFMPLLPGFRHVPFG---------N----IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCD  262 (459)
T ss_pred             cccCCCCCCCCCcccCCC---------C----HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHH
Confidence            5543221  344444332         3    3556666642  123579999999999999999999999999999999


Q ss_pred             HhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC--CCccccCCCcHHHHH
Q 011669          286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR--RNYFNTFGGNPVCTA  362 (480)
Q Consensus       286 ~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~--~~~~~t~~~~~~~~a  362 (480)
                      +||+++|+|||||||||+| .+|+++++|+.||++||||++||| +|+|++++++++++.+..  ..+++||++||++|+
T Consensus       263 ~~g~llI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~A  341 (459)
T PRK11522        263 EFGALLILDEVQTGMGRTG-KMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACA  341 (459)
T ss_pred             HcCCEEEeccceecCCccc-hhhhhhccCCCCCEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHH
Confidence            9999999999999999999 799999999999999999999999 699999999999987743  357899999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC-ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCc
Q 011669          363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGV  441 (480)
Q Consensus       363 aa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  441 (480)
                      +++++|++++++++.+++++++++|+++|+++.++++ .+.++||.|+|+++++..+        .....+.+.|+++||
T Consensus       342 aala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~--------~~~~~i~~~l~~~Gv  413 (459)
T PRK11522        342 AALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN--------EIGYNFASEMFRQRV  413 (459)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCc--------hHHHHHHHHHHHCCe
Confidence            9999999999999999999999999999999998897 7899999999999999643        225668899999999


Q ss_pred             eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++.+.+...+++||.||+++|++|||+++++|++++++
T Consensus       414 l~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~  451 (459)
T PRK11522        414 LVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAA  451 (459)
T ss_pred             EEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            99876545689999999999999999999999998864

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=6.9e-73  Score=577.74  Aligned_cols=411  Identities=31%  Similarity=0.478  Sum_probs=354.8

Q ss_pred             HHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCC
Q 011669           62 EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLN  140 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~  140 (480)
                      .+++....++.++...  ..|+++++|+|+||||+|||+||||++|++++++||+||+|++|+++|++++.|... .+.+
T Consensus         5 ~~~~~~~~~~~~~~~~--~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~   82 (425)
T PRK07495          5 SLTDRRNAAISRGVGM--TTQIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPY   82 (425)
T ss_pred             HHHHHHHhhhccccCc--CCCeeEEeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCC
Confidence            4555554554443221  238999999999999999999999999999999999999999999999999876543 5678


Q ss_pred             hHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccC-CCccccccC--
Q 011669          141 HAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNWKFNVVQ--  216 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~~--  216 (480)
                      +...+|+++|++.+|.+ .++|+|+||||||||.|||+||.++++.+||+++++|||++.+++++++. ..++..+.+  
T Consensus        83 ~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~  162 (425)
T PRK07495         83 ENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMM  162 (425)
T ss_pred             HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCC
Confidence            89999999999999865 37999999999999999999999999999999999999999999988774 234433332  


Q ss_pred             CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc-cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      .++.++++|+.+++   .+.+.++++++++++. ..++++++||+||+|+++|.+++|++|+++|+++|++||+++|+||
T Consensus       163 ~~~~~~~~~~~~~g---~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DE  239 (425)
T PRK07495        163 PDVYHVPFPVELHG---VSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADE  239 (425)
T ss_pred             CCeEEecCCccccc---ccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            57777887766543   1233446677877763 2346899999999999999888999999999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhH
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK  375 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~  375 (480)
                      ||+||||+| .+|+++++++.||++||||++++|+|+|++++++++++.+....+.+||++||++|++++++|+++++++
T Consensus       240 v~tG~gr~G-~~~a~~~~gv~pDi~tlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~  318 (425)
T PRK07495        240 VQTGFARTG-KLFAMEHHEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEED  318 (425)
T ss_pred             hhhcCCcCC-CceeecccCCCCCEEeehhhhcCCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhch
Confidence            999999999 6888999999999999999999999999999999999988877788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEE
Q 011669          376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRI  455 (480)
Q Consensus       376 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi  455 (480)
                      +.+++++++++++++|+++.++++.+.+++|.|+|+|+++..+. ...|+......+.+.|+++|+++.+.+..++++||
T Consensus       319 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~-~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~  397 (425)
T PRK07495        319 LCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDAD-SGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRF  397 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEecCC-CCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEE
Confidence            99999999999999999999889999999999999999997543 23344445677889999999999876655789999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          456 TPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .||+++|++++|+++++|++++++
T Consensus       398 ~Ppl~it~~~id~~~~~l~~~l~~  421 (425)
T PRK07495        398 LAPITIQDDVFAEALDILEASILE  421 (425)
T ss_pred             eCCCccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999875

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=5.5e-73  Score=581.71  Aligned_cols=417  Identities=31%  Similarity=0.532  Sum_probs=359.6

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-c
Q 011669           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-L  137 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~  137 (480)
                      ++.+++++.++++.+.... ...|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.|... .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~   81 (445)
T PRK08593          3 KAHQLIQEDEHYFAKSGRI-KYYPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAY   81 (445)
T ss_pred             hHHHHHHHHHHhhcccccc-CCCCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccccc
Confidence            4457777777776554321 2248999999999999999999999999999999999999999999999999876544 3


Q ss_pred             cCChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC-ccccc-
Q 011669          138 YLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-WKFNV-  214 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~-~~~~~-  214 (480)
                      +.++...+|+++|++.+|... ++|+|+||||||||.|||+||.++++.+||.++++|||++.+++++++... ++... 
T Consensus        82 ~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~  161 (445)
T PRK08593         82 MYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYG  161 (445)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCC
Confidence            578999999999999998653 689999999999999999999999999999999999999999999987432 22222 


Q ss_pred             -cCCCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHcc-CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669          215 -VQTGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (480)
Q Consensus       215 -~~~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  288 (480)
                       ..+++..+++|+.+++++....    ..++++++++++.. .++++++||+||+|+++|.++++++||++|+++|++||
T Consensus       162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g  241 (445)
T PRK08593        162 PLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHG  241 (445)
T ss_pred             CCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence             2367888898888877664322    22345666666532 24689999999999999999999999999999999999


Q ss_pred             CEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHH
Q 011669          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L  368 (480)
                      +++|+||||+||||+| .+|+++++++.||++|+||++++|+|+|++++++++++.+....+.+|+++||++|++++++|
T Consensus       242 ~llI~DEv~tg~GrtG-~~~a~~~~gv~pDi~t~gK~l~~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l  320 (445)
T PRK08593        242 ILFAVDDIQQGLGRTG-KWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATI  320 (445)
T ss_pred             CEEEEechhhCCCcCc-hHHHHHhcCCCCCEeeecccccCCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999 788889999999999999999999999999999999998876667789999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF  448 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  448 (480)
                      +.++++++.+++++++++++++|+++.++++.+.++||.|+|+++++..+.....++......+.+.|+++||++.+.+ 
T Consensus       321 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~-  399 (445)
T PRK08593        321 DMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVA-  399 (445)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccC-
Confidence            9999999999999999999999999998999999999999999999976543344445556778999999999997643 


Q ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          449 YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       449 ~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       ++.+||.||+++|++|||+++++|++++++
T Consensus       400 -~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  429 (445)
T PRK08593        400 -GNVLRFQPPLVITYEQLDTALNTIEQAFTA  429 (445)
T ss_pred             -CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence             579999999999999999999999998865

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=100.00  E-value=1.8e-73  Score=585.80  Aligned_cols=397  Identities=29%  Similarity=0.473  Sum_probs=342.3

Q ss_pred             CCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCC--
Q 011669           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGN--  157 (480)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~--  157 (480)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|+.++.+... .+.++...+|+++|++.+|..  
T Consensus        21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~  100 (442)
T TIGR00709        21 LPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKM  100 (442)
T ss_pred             CCceEEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCC
Confidence            48999999999999999999999999999999999999999999999998654433 356889999999999999853  


Q ss_pred             -CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc--cCCCeeEecCCCCcCCCCCC
Q 011669          158 -LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV--VQTGVHHALNPDPYRGVFGA  234 (480)
Q Consensus       158 -~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~--~~~g~~~~~~p~~~~~~~~~  234 (480)
                       .+.+||+||||||||.|||+||.+++|.+||+++++|||++.+++++++...++...  ..+++..+++|+.++++|+.
T Consensus       101 ~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (442)
T TIGR00709       101 DYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGI  180 (442)
T ss_pred             CccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccC
Confidence             355667799999999999999999999999999999999999999998754443222  23577788888888887764


Q ss_pred             ChH----HHHHHHHHHHHc--cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcc
Q 011669          235 DGE----MYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW  308 (480)
Q Consensus       235 d~~----~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~  308 (480)
                      +.+    .+.+.+++.++.  ...+++++||+||+||++|.+++|++|+++|+++|++||+++|+|||||||||+| .+|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG-~~~  259 (442)
T TIGR00709       181 GGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG-TMF  259 (442)
T ss_pred             CchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC-chh
Confidence            322    222334555532  1235899999999999999999999999999999999999999999999999999 799


Q ss_pred             cccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 011669          309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLK  388 (480)
Q Consensus       309 ~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~  388 (480)
                      +++++++.||++|+||++++|+|+|+++++++ ++.+....+.+||++||++|++++++|+.++++++.+++++++++++
T Consensus       260 a~~~~gv~PDiv~~gK~l~~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~  338 (442)
T TIGR00709       260 AFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERIT  338 (442)
T ss_pred             HHHHcCCCCcEEEEcccccCCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998 46665556789999999999999999999999999999999999999


Q ss_pred             HHHHHhHHhcCceeeEeccceeEEEEEecCCCcCC------CCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCC
Q 011669          389 ERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT------PAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT  462 (480)
Q Consensus       389 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~------~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t  462 (480)
                      ++|+++.++++.+.++||.|+|++++++++..++.      ++......+...|+++||++.+.+..++++||.||+++|
T Consensus       339 ~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it  418 (442)
T TIGR00709       339 SFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITID  418 (442)
T ss_pred             HHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCC
Confidence            99999999999999999999999999986533221      122345678889999999998766667899999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011669          463 KEDADYLVDVMDYSLSK  479 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~~  479 (480)
                      ++|+|+++++|++++.+
T Consensus       419 ~~ei~~~~~~l~~~l~~  435 (442)
T TIGR00709       419 QEECEEGISRFKQAVEE  435 (442)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998864

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK06541 hypothetical protein; Provisional

Probab=100.00  E-value=2e-72  Score=578.81  Aligned_cols=419  Identities=31%  Similarity=0.491  Sum_probs=358.0

Q ss_pred             CHHHHHHHHhhhcCCccccc--c-C-CCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 011669           59 SADEILAKRKTFLSPSLFHL--Y-S-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~--~-~-~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~  134 (480)
                      ++.++.+..+++++......  + . .|+++++|+|+||||.|||+||||++|++++++||+||+|++|+.+|++++.|.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~   87 (460)
T PRK06541          8 SDTDLQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFF   87 (460)
T ss_pred             cHHHHHHHhhcccccCccCccccccCCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCc
Confidence            45667777677776544332  2 2 478999999999999999999999999999999999999999999999998765


Q ss_pred             cc-ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh---c---CCceEEEEcCCcccccccccccccC
Q 011669          135 TV-LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---T---GCNDIISLRNAYHGNAAGTMGATAQ  207 (480)
Q Consensus       135 ~~-~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~---~---~~~~ii~~~~~yhG~~~~~~~~~~~  207 (480)
                      .. .+.++...+++++|++..|.++++|+|+||||||||.|||+||.+   +   ++.+||.++++|||++.+++++++.
T Consensus        88 ~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~  167 (460)
T PRK06541         88 PLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGL  167 (460)
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCC
Confidence            43 467899999999999999877889999999999999999999998   3   4789999999999999999999886


Q ss_pred             CCcccccc--CCCeeEecCCCCcCCC-CCCChH----HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHH
Q 011669          208 SNWKFNVV--QTGVHHALNPDPYRGV-FGADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAV  280 (480)
Q Consensus       208 ~~~~~~~~--~~g~~~~~~p~~~~~~-~~~d~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l  280 (480)
                      +.++..+.  .+|+..++.|+.++++ |+++.+    .+++.++++++...++++++||+||+|+++|.+++|++||++|
T Consensus       168 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l  247 (460)
T PRK06541        168 PAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERV  247 (460)
T ss_pred             hhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence            65543322  3688888888888776 655432    2356788888654456899999999999999999999999999


Q ss_pred             HHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCc-cccccccCHHHHHhhcCC----CccccCC
Q 011669          281 YKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRR----NYFNTFG  355 (480)
Q Consensus       281 ~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~-pig~v~~~~~~~~~l~~~----~~~~t~~  355 (480)
                      +++|++||+++|+|||||||||+| .+|+++++++.||++||||++++|+ |+|++++++++++.+...    .+.+||+
T Consensus       248 ~~lc~~~g~llI~DEV~tGfGR~G-~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~  326 (460)
T PRK06541        248 REICDRYDVLLVSDEVICAFGRLG-EMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFG  326 (460)
T ss_pred             HHHHHHcCCEEEEechhhCCCcCc-hhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCC
Confidence            999999999999999999999999 7888999999999999999999997 999999999999877532    3568999


Q ss_pred             CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCH------HHH
Q 011669          356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK------AET  429 (480)
Q Consensus       356 ~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~------~~~  429 (480)
                      +||+++++++++|+.++++++.+++++++++++++|+++.+ ++.+.+++|.|+|++++|+.+..++.|..      ...
T Consensus       327 gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~  405 (460)
T PRK06541        327 GHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLR  405 (460)
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHH
Confidence            99999999999999999889999999999999999999875 88889999999999999986543333311      112


Q ss_pred             HHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          430 LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       430 ~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..+.+.|+++||++.+.+...+.+||+||+++|++|||+++++|++++++
T Consensus       406 ~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~  455 (460)
T PRK06541        406 GFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTE  455 (460)
T ss_pred             HHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            35778899999999875333478999999999999999999999999865

>PRK06917 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-72  Score=578.61  Aligned_cols=396  Identities=31%  Similarity=0.489  Sum_probs=343.5

Q ss_pred             CeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCCCCE
Q 011669           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNLKV  160 (480)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~~~~  160 (480)
                      | ++++|+|+||||+|||+||||++|++++++||+||+|.+|+.+|++++.+... .+.++...+|+++|++.+|..+++
T Consensus        15 p-~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~   93 (447)
T PRK06917         15 P-VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNW   93 (447)
T ss_pred             C-eEEeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCCE
Confidence            5 59999999999999999999999999999999999999999999998765433 367899999999999999977789


Q ss_pred             EEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCcccccc--CCCeeEecCCCCcCCCC
Q 011669          161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGVF  232 (480)
Q Consensus       161 v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~g~~~~~~p~~~~~~~  232 (480)
                      ++|+||||||||.|||+||.+      ++|.+||.++++|||++.+++++++...++..+.  ..++..++.|..+++++
T Consensus        94 v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  173 (447)
T PRK06917         94 SFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPV  173 (447)
T ss_pred             EEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCccccccc
Confidence            999999999999999999876      6788999999999999999999887654443322  14566677777777666


Q ss_pred             CCChH----HHHHHHHHHHHccCCCceEEEEEcccCCC-CcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCc
Q 011669          233 GADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGV-GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF  307 (480)
Q Consensus       233 ~~d~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~-~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~  307 (480)
                      +.+..    .+.+.++++++....+++++||+||+|++ ||+++++++|+++|+++|++||+++|+|||||||||+| .+
T Consensus       174 ~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG-~~  252 (447)
T PRK06917        174 QKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG-AM  252 (447)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCccc-ch
Confidence            54322    24567788887554468999999999985 67999999999999999999999999999999999999 79


Q ss_pred             ccccccCCCcceeeeccccccCc-cccccccCHHHHHhhcCC----CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011669          308 WGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHV  382 (480)
Q Consensus       308 ~~~~~~~~~pDivt~sK~~g~G~-pig~v~~~~~~~~~l~~~----~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~  382 (480)
                      |+++++++.||++||||+++||+ |+|++++++++++.+...    .+++||++||++|++++++|++++++++.+++++
T Consensus       253 ~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~  332 (447)
T PRK06917        253 FAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAE  332 (447)
T ss_pred             hhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            99999999999999999999996 999999999999987542    3568999999999999999999998999999999


Q ss_pred             HHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC---HHHHHHHHHHHHHcCceeeccC-----cCCCEEE
Q 011669          383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLYIMDKMKEMGVLVGKGG-----FYGNVFR  454 (480)
Q Consensus       383 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iR  454 (480)
                      ++++|++.|+++.++++.+.++||.|+|++++|+.+...+.+.   ......+.+.|+++||++.+.+     .+++.+|
T Consensus       333 ~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~  412 (447)
T PRK06917        333 KGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVI  412 (447)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEE
Confidence            9999999999999889999999999999999998654433332   2346778889999999998752     2368999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          455 ITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       455 i~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |+||+++|++|||+++++|++++++
T Consensus       413 l~Ppl~it~~eid~~~~~l~~~l~~  437 (447)
T PRK06917        413 IAPPMTITYSELDELLSIFAKSVEE  437 (447)
T ss_pred             EECCCcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999875

>PRK12403 putative aminotransferase; Provisional

Probab=100.00  E-value=2.7e-72  Score=578.41  Aligned_cols=416  Identities=26%  Similarity=0.377  Sum_probs=348.4

Q ss_pred             HHHHHHHHhhhcCCcccc--cc--CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc
Q 011669           60 ADEILAKRKTFLSPSLFH--LY--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST  135 (480)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~--~~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~  135 (480)
                      .+++++...++.++....  .+  ..|+++++|+|+||||.|||+||||.+|+++.+|||+||+|++|+++|++++.+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~   90 (460)
T PRK12403         11 TRDYQAADAAHHIHAFLDQKALNAEGPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYN   90 (460)
T ss_pred             hHHHHHhhhcccccccccccccccCCCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCee
Confidence            355666555554333221  11  24899999999999999999999999999999999999999999999999987654


Q ss_pred             cc--cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc---C---CceEEEEcCCcccccccccccccC
Q 011669          136 VL--YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT---G---CNDIISLRNAYHGNAAGTMGATAQ  207 (480)
Q Consensus       136 ~~--~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~---~---~~~ii~~~~~yhG~~~~~~~~~~~  207 (480)
                      ..  +.++...+|+++|++.+|.++++++|+|||||||+.|||+||.++   +   +..|+.+.++|||++.+++++++.
T Consensus        91 ~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~  170 (460)
T PRK12403         91 MFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGM  170 (460)
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCC
Confidence            32  457889999999999998777899999999999999999999883   3   456889999999999999999886


Q ss_pred             CCcccccc-CCCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHH
Q 011669          208 SNWKFNVV-QTGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (480)
Q Consensus       208 ~~~~~~~~-~~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  282 (480)
                      ..++...+ .+++.+++.|+.|+++++...    +.+++++++.+....++++++||+||+|+++|.+.++++||++|++
T Consensus       171 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~  250 (460)
T PRK12403        171 KFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQR  250 (460)
T ss_pred             ccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHH
Confidence            54443222 256778888887776654322    2234567666644335689999999999999999999999999999


Q ss_pred             HHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCc-cccccccCHHHHHhhcC----CCccccCCCc
Q 011669          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTR----RNYFNTFGGN  357 (480)
Q Consensus       283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~-pig~v~~~~~~~~~l~~----~~~~~t~~~~  357 (480)
                      +|++||++||+||||+||||+| .+|+++++|+.|||+|+||+++||+ |+|++++++++++.+..    ..|++||++|
T Consensus       251 lc~~~g~lLI~DEV~tGfGRtG-~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gn  329 (460)
T PRK12403        251 ICRQYDVLLCADEVIGGFGRTG-EWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGH  329 (460)
T ss_pred             HHHHcCCEEEEeccccCCCcCc-hhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCC
Confidence            9999999999999999999999 8999999999999999999999995 99999999999988753    1367899999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCH---HHHHHHH
Q 011669          358 PVCTAAGHAVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK---AETLYIM  433 (480)
Q Consensus       358 ~~~~aaa~a~L~~i~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~---~~~~~~~  433 (480)
                      |++|++++++|++++++++.++++ ++++++++.|+++.++++.+.++||.|+|++++|+.+..++.+..   .....+.
T Consensus       330 Pl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~  409 (460)
T PRK12403        330 PVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCR  409 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHH
Confidence            999999999999999999999996 999999999999999999999999999999999986543333321   2234566


Q ss_pred             HHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          434 DKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       434 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.|+++|+++.+.+   +.+||+||+++|++|+|+++++|++++++
T Consensus       410 ~~~~~~Gll~~~~~---~~~~l~Ppl~it~~eid~~~~~l~~al~~  452 (460)
T PRK12403        410 TIGFEEGVIIRSTL---GRMIMAPALVAGRAEIDELVDKTRIAVDR  452 (460)
T ss_pred             HHHHhCCEEEEecC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            77899999998643   57999999999999999999999999865

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.5e-73  Score=523.74  Aligned_cols=393  Identities=29%  Similarity=0.514  Sum_probs=345.6

Q ss_pred             CCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 011669           58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~  137 (480)
                      ..+++++++..+|-.++   |.+.|+++++++|+++||.+|++|+||.+++++++.|||||.|.+|+++|.+++..++..
T Consensus        21 ~aS~~~~~~E~k~~ahn---yhpLpvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssra   97 (427)
T KOG1402|consen   21 TASQQIMERENKYGAHN---YHPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRA   97 (427)
T ss_pred             cchhhhhchhhhccccc---CCcCceEEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHH
Confidence            34566777666765544   667899999999999999999999999999999999999999999999999998777777


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc--------CCceEEEEcCCcccccccccccccCCC
Q 011669          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--------GCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~--------~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      +.+....++++.+.++++  .+.|+-+|+|.||+|.|+|+||.+.        .+.+|++..++|||++.+++++++.+.
T Consensus        98 fYnd~~~~f~~~vt~lf~--~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~d  175 (427)
T KOG1402|consen   98 FYNDVLGEFAEYVTKLFG--YDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPD  175 (427)
T ss_pred             HhhhhHHHHHHHHHHhcC--cceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcc
Confidence            889999999999999995  5789999999999999999999542        234688899999999999999998662


Q ss_pred             -cc-ccccCCC-eeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH
Q 011669          210 -WK-FNVVQTG-VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK  286 (480)
Q Consensus       210 -~~-~~~~~~g-~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~  286 (480)
                       |. +....++ +..+++.         |    +++|+.+++.   +++++||+|||||++|+++||++||+++++||+|
T Consensus       176 s~~~fgp~~P~~~~~v~Y~---------d----~eale~~l~~---~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtk  239 (427)
T KOG1402|consen  176 SWDGFGPFLPGVVDKVPYG---------D----AEALEVALKS---PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTK  239 (427)
T ss_pred             hhhccCCCCCCcceeeccC---------C----HHHHHHHhcC---CCeeEEEeeccccccceEeCCchhHHHHHHHHHh
Confidence             22 2222245 4444432         3    6889998874   6999999999999999999999999999999999


Q ss_pred             hCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHH
Q 011669          287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (480)
Q Consensus       287 ~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~  365 (480)
                      |++++|.||||||+|||| ++|++++.++.||++.++|+++|| +|+++++.++++|..+.++.|++||++||++|+++.
T Consensus       240 ynvl~I~DEvQTGl~RTG-k~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vai  318 (427)
T KOG1402|consen  240 YNVLLIADEVQTGLARTG-KLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAI  318 (427)
T ss_pred             hcEEEEehhhhhcccccC-cEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHH
Confidence            999999999999999999 899999999999999999999999 799999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC-ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG  444 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~  444 (480)
                      |+|+++.++++.++.+.+|..++.+|.++..++| .+..|||+|++.++++...+.    ....+..++-.|+++|++..
T Consensus       319 Aalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~----~~~~aw~~cl~lk~~g~LAk  394 (427)
T KOG1402|consen  319 AALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKT----SGQDAWDVCLALKENGLLAK  394 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEeccccc----cchhHHHHHHcccccccccC
Confidence            9999999999999999999999999999988885 578999999999999965432    12345667888899999988


Q ss_pred             ccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          445 KGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       445 ~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      |.  +++.|||.||++++++|+++.+++|++++.
T Consensus       395 pt--H~~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  395 PT--HGNIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             CC--CCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence            75  378999999999999999999999998864

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=100.00  E-value=1.7e-72  Score=582.93  Aligned_cols=394  Identities=27%  Similarity=0.480  Sum_probs=340.0

Q ss_pred             CCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc--ccCChHHHHHHHHHHHhC-CCC
Q 011669           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV--LYLNHAIADFAEALASKM-PGN  157 (480)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~--~~~~~~~~~l~e~L~~~~-~~~  157 (480)
                      .|+++++|+|+|+||+|||+||||.+|+++.+|||+||+|++|+++|++++.+...  .+.++...+|+++|.+.+ +.+
T Consensus        71 ~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~  150 (504)
T PLN02760         71 EPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARK  150 (504)
T ss_pred             CCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCC
Confidence            58999999999999999999999999999999999999999999999999765433  356888999999999985 455


Q ss_pred             CCEEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCCCcccc--ccCCCeeEecCCCCcC
Q 011669          158 LKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFN--VVQTGVHHALNPDPYR  229 (480)
Q Consensus       158 ~~~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~--~~~~g~~~~~~p~~~~  229 (480)
                      +++|+|+|||+|||+.|||+||.|+      ++.+||.++++|||++.+++++++.+.++..  .+..++.++++|+.++
T Consensus       151 ~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~  230 (504)
T PLN02760        151 MGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWR  230 (504)
T ss_pred             CCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccc
Confidence            7899999999999999999999763      4789999999999999999998886654333  2335677888887776


Q ss_pred             CCCCC-Ch----HHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC
Q 011669          230 GVFGA-DG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG  304 (480)
Q Consensus       230 ~~~~~-d~----~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G  304 (480)
                      +++.. +.    ..+.+++++++....++++++||+||+|+++|+++||++|+++|+++|++||++||+|||||||||+|
T Consensus       231 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG  310 (504)
T PLN02760        231 FHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLG  310 (504)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccc
Confidence            53221 11    22346788877543356899999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC-------CCccccCCCcHHHHHHHHHHHHHhhhhHH
Q 011669          305 SHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTFGGNPVCTAAGHAVLKVIQKDKL  376 (480)
Q Consensus       305 ~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~-------~~~~~t~~~~~~~~aaa~a~L~~i~~~~~  376 (480)
                       .+|+++++|+.|||+||||+++|| +|+|++++++++++.+..       ..|++||++||++|++++++|++++++++
T Consensus       311 -~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l  389 (504)
T PLN02760        311 -TMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNI  389 (504)
T ss_pred             -hhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCH
Confidence             799999999999999999999999 599999999999998753       24789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC---HHHHHHHHHHHHHcCceeeccCcCCCEE
Q 011669          377 QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLYIMDKMKEMGVLVGKGGFYGNVF  453 (480)
Q Consensus       377 ~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  453 (480)
                      .+++++++++|+++|+++ .+++++.++||.|+|+++++.++.....+.   ......+.+.|+++||++.+.+   +.+
T Consensus       390 ~~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g---~~l  465 (504)
T PLN02760        390 PEHVNKIAPRFQDGIKAF-SGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG---DNI  465 (504)
T ss_pred             HHHHHHHHHHHHHHHHHH-hcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC---CEE
Confidence            999999999999999998 678999999999999999998754333322   2235678889999999998753   689


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          454 RITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||+||+++|++|||+++++|++++++
T Consensus       466 rl~Ppl~it~eeid~~~~~l~~al~~  491 (504)
T PLN02760        466 MMSPPLIITPEEVDELISIYGKALKA  491 (504)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998864

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=8.3e-72  Score=572.37  Aligned_cols=416  Identities=37%  Similarity=0.589  Sum_probs=358.8

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 011669           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (480)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~  134 (480)
                      ++.++++++++..++++.+...  ...|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.|.
T Consensus        12 ~~~~~s~~l~~~~~~~~~~~~~--~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~   89 (441)
T PRK05769         12 LPGPKAREIIERDEKYLAQSTR--RWYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHY   89 (441)
T ss_pred             CCCccHHHHHHHHHHhhCcccc--cCCCeeEEecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCc
Confidence            4567888888877777765422  23589999999999999999999999999999999999999999999999998765


Q ss_pred             cc-ccCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Ccc
Q 011669          135 TV-LYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWK  211 (480)
Q Consensus       135 ~~-~~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~  211 (480)
                      .. .+.++...+|+++|++..|. .+++|+|+||||||||.|||+||.++++.+||.++++|||++.+++++++.. .++
T Consensus        90 ~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~  169 (441)
T PRK05769         90 SLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQR  169 (441)
T ss_pred             cCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccc
Confidence            43 46688999999999999975 3689999999999999999999999999999999999999999999987642 233


Q ss_pred             ccc--cCCCeeEecCCCCcCCCCC-CCh----HHHHHHHHH-HHHc-cCCCceEEEEEcccCCCCcceeCCCChHHHHHH
Q 011669          212 FNV--VQTGVHHALNPDPYRGVFG-ADG----EMYAKDVQD-LIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (480)
Q Consensus       212 ~~~--~~~g~~~~~~p~~~~~~~~-~d~----~~~~~~le~-~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  282 (480)
                      ..+  ...++..+++|+.++++|+ ++.    +.+++.+++ +++. ..++++++||+||+++++|.++++++||++|++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~  249 (441)
T PRK05769        170 KGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRK  249 (441)
T ss_pred             cCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHH
Confidence            222  2368888999988888876 332    223455776 3432 234689999999999999999999999999999


Q ss_pred             HHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHH
Q 011669          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA  362 (480)
Q Consensus       283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~a  362 (480)
                      +|++||+++|+||||+||||+| .+|+++++++.||+++|||++++|+|+|++++++++++.+ ...+.+||++||++|+
T Consensus       250 l~~~~g~lli~DEv~tG~gr~G-~~~a~~~~gv~pDivt~~K~l~~G~p~gav~~~~~i~~~~-~~~~~~T~~g~p~~~a  327 (441)
T PRK05769        250 LADKYGILLIDDEVQTGMGRTG-KMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFLP-PGSHANTFGGNPVAAA  327 (441)
T ss_pred             HHHHcCCEEEEechhhCCCccc-ceehhhccCCCCCEEEEcccccCCcccEEEEEehhhhhcC-CCCCCCCCCcCHHHHH
Confidence            9999999999999999999999 7888899999999999999999999999999999998643 3467899999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCce
Q 011669          363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL  442 (480)
Q Consensus       363 aa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~  442 (480)
                      +++++|+++++ ++.+++++++++|+++|+++.++++.+.+++|.|+|++++++.+.  ..++......+.+.|+++||+
T Consensus       328 aa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~Gil  404 (441)
T PRK05769        328 AALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDR--KEPDPKLRDKVLYEAFKRGLL  404 (441)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCC--ccccHHHHHHHHHHHHhCCcE
Confidence            99999999988 999999999999999999999889999999999999999997643  223444567788899999999


Q ss_pred             eeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          443 VGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       443 v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.+.+  .+.+||+||+++|++|||+++++|++++++
T Consensus       405 ~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  439 (441)
T PRK05769        405 LLGAG--KSAIRIIPPLIITEEEADIGLEILEEAIKE  439 (441)
T ss_pred             EecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            97654  478999999999999999999999999875

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=100.00  E-value=5.9e-72  Score=576.97  Aligned_cols=422  Identities=32%  Similarity=0.531  Sum_probs=363.7

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc
Q 011669           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS  134 (480)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~  134 (480)
                      ++.+++.+++++..+++.++...  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.|.
T Consensus        12 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~   89 (451)
T PRK06918         12 IPGPKAASLLERRQNIVPKGVSN--GIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHT   89 (451)
T ss_pred             CCCCCHHHHHHHHHHhhcccccc--CCCceEEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCc
Confidence            44578889999888887655332  2378999999999999999999999999999999999999999999999998765


Q ss_pred             cc-ccCChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccC-CCcc
Q 011669          135 TV-LYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNWK  211 (480)
Q Consensus       135 ~~-~~~~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~  211 (480)
                      .. .+.++...+|+++|++.+|... ++|+|+||||||||.|||+||.+++|.+||+++++|||++.+++++++. ..++
T Consensus        90 ~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~  169 (451)
T PRK06918         90 GFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYK  169 (451)
T ss_pred             cccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCcccc
Confidence            43 4568999999999999998655 6999999999999999999999999999999999999999999998874 2233


Q ss_pred             cccc--CCCeeEecCCCCcCCCCCCChH----HHHHHHHHHHHc-cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHH
Q 011669          212 FNVV--QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI  284 (480)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~  284 (480)
                      ..+.  .+++..+++|+.++++.+...+    .+.+.+++++.. ..++++++||+||+|+++|.++++++|+++|+++|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~  249 (451)
T PRK06918        170 FGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNIC  249 (451)
T ss_pred             ccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHH
Confidence            3222  2567778888777665432211    223456665532 23568999999999999999999999999999999


Q ss_pred             HHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHH
Q 011669          285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAG  364 (480)
Q Consensus       285 ~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa  364 (480)
                      ++||+++|+||||+||||+| .+++++.+++.||+++|||++++|+|+||+++++++++.+....+++||++||++|+++
T Consensus       250 ~~~gillI~DEV~tg~gr~g-~~~a~~~~~v~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa  328 (451)
T PRK06918        250 SEHGILFVADEIQTGFARTG-KYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAA  328 (451)
T ss_pred             HHcCCEEEEeccccCcCccC-ceehhHhcCCCCCEEeeehhhcCCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHH
Confidence            99999999999999999999 68888889999999999999999999999999999999887777889999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee
Q 011669          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG  444 (480)
Q Consensus       365 ~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~  444 (480)
                      +++|+.++++++.+++++++++++++|+++.++++.+.+++|.|+|+++++..+..+..|+......+.+.|+++||++.
T Consensus       329 ~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~  408 (451)
T PRK06918        329 LAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLL  408 (451)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEe
Confidence            99999998889999999999999999999988888889999999999999975443334555567788889999999999


Q ss_pred             ccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          445 KGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       445 ~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++.+++++||+||+++|+++|++++++|++++++
T Consensus       409 ~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~  443 (451)
T PRK06918        409 SAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQA  443 (451)
T ss_pred             ecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            88767789999999999999999999999999865

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=100.00  E-value=1.3e-73  Score=520.17  Aligned_cols=413  Identities=44%  Similarity=0.752  Sum_probs=374.3

Q ss_pred             CHHHHHHHHhhhcCCcccccc-CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 011669           59 SADEILAKRKTFLSPSLFHLY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~  137 (480)
                      +..+.+.++++++.+....|| ..|+.|+|++|+|++|.+|++|||+.++..-+  |||||+|++|...|+... .++.+
T Consensus         6 SK~etlklRk~hIG~~Cq~Fy~sDP~kivRaq~QYmfDE~g~~yLDCInNVaHv--ghchp~VV~A~~kQmat~-~tN~R   82 (452)
T KOG1403|consen    6 SKTETLKLRKQHIGQACQLFYRSDPLKIVRAQGQYMFDEEGTRYLDCINNVAHV--GHCHPEVVRAGAKQMATI-STNNR   82 (452)
T ss_pred             hhHHHHhHHHhccCcceeEEecCCchhhehhccceeeccCcccHHHHhhhhhhc--ccCCHHHHHHHHHHHhHh-cccch
Confidence            346789999999998876555 56999999999999999999999999887655  999999999999999876 34567


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC-
Q 011669          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-  216 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~-  216 (480)
                      +.+..+.+.++.|...+|. ++.++|+|||||||++||++||.++++.++|..+.+|||.....+-+   ++|++..+. 
T Consensus        83 Flhd~lv~cA~~l~stlPe-Lsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~---SPYKF~~g~~  158 (452)
T KOG1403|consen   83 FLHDELVQCARTLTSTLPE-LSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEV---SPYKFNQGGG  158 (452)
T ss_pred             hhHHHHHHHHHHHhhcCCC-ceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeec---cceeccCCCC
Confidence            8899999999999999997 99999999999999999999999999999999999999998888766   456666543 


Q ss_pred             ---CC-eeEecCCCCcCCCCCCC-------hHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHH
Q 011669          217 ---TG-VHHALNPDPYRGVFGAD-------GEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (480)
Q Consensus       217 ---~g-~~~~~~p~~~~~~~~~d-------~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  283 (480)
                         ++ ++..|.|+.||+.|..+       +..|.++++++++..  ....+|++|.|..|+.||.+.||.+|++.+++.
T Consensus       159 v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~  238 (452)
T KOG1403|consen  159 VAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADA  238 (452)
T ss_pred             cCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHH
Confidence               44 45678999999988642       235778888888642  234799999999999999999999999999999


Q ss_pred             HHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC--CCccccCCCcHHHH
Q 011669          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR--RNYFNTFGGNPVCT  361 (480)
Q Consensus       284 ~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~--~~~~~t~~~~~~~~  361 (480)
                      .+.+|.++|.||||.||||.|+++|+++.++..|||+||+|.+|+|.|+++|++++++++.+..  ..+++||+|||++|
T Consensus       239 Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsC  318 (452)
T KOG1403|consen  239 VRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSC  318 (452)
T ss_pred             HhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccHHHHHHhccccceehhccCCCchhH
Confidence            9999999999999999999999999999999999999999999999999999999999999876  34789999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cC
Q 011669          362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MG  440 (480)
Q Consensus       362 aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~G  440 (480)
                      |+++++++++++|+++++..+++.+|...|+++..+++.++++||.|+|++++++++..++.|+...+..+...|++ .|
T Consensus       319 Av~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~  398 (452)
T KOG1403|consen  319 AVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYR  398 (452)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999989889999986 47


Q ss_pred             ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      |++...|+..|.+.|.||+|++++++++++..|+++|.
T Consensus       399 VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT  436 (452)
T KOG1403|consen  399 VLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILT  436 (452)
T ss_pred             EEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence            99999888899999999999999999999999999875

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=5.5e-71  Score=566.09  Aligned_cols=417  Identities=33%  Similarity=0.485  Sum_probs=359.2

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc-
Q 011669           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL-  137 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~-  137 (480)
                      ++.++++++++++.+.... ...|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.|.... 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~   80 (443)
T PRK08360          2 KPLEIIERYSKVISPANRV-TYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIY   80 (443)
T ss_pred             CHHHHHHHHHHhccccccc-ccCCceEEecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccccc
Confidence            3456777777786665321 13489999999999999999999999999999999999999999999999998775543 


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Ccccccc-
Q 011669          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV-  215 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~-  215 (480)
                      +.++...+|+++|++..|...++|+|+||||||||.|||+||.+++|.+|+.+.++|||++.+++++++.. .++..+. 
T Consensus        81 ~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~  160 (443)
T PRK08360         81 GFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGE  160 (443)
T ss_pred             cCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCC
Confidence            45788999999999999877789999999999999999999999999999999999999999999887642 2222211 


Q ss_pred             CCCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHcc-CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669          216 QTGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  290 (480)
                      .+++.++++|+.++.++..+.    ..+.+.++++++.. ..+++++||+||+||++|.+.++++|+++|+++|++||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~l  240 (443)
T PRK08360        161 LSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGIL  240 (443)
T ss_pred             CCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence            357778888887777664321    12345567777542 2468999999999999999998999999999999999999


Q ss_pred             EEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH
Q 011669          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (480)
Q Consensus       291 lI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~  370 (480)
                      +|+||||+||||+| .+|+++++++.||++|+||++++|+|+||+++++++++.+....+.+|+++||+++++++++|+.
T Consensus       241 lI~DEv~~g~gr~G-~~~a~~~~~~~pDiitlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~  319 (443)
T PRK08360        241 LVVDEVQSGLGRTG-KWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEE  319 (443)
T ss_pred             EEEeccccCCCcCc-cchhhhhcCCCCCEEEecccccCCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999 67788888999999999999999999999999999999987766889999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCC
Q 011669          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG  450 (480)
Q Consensus       371 i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~  450 (480)
                      ++++++.+++++++++++++|+++.++++.+.+++|.|+|++++|+.+..++.++...+..+...|+++|+++.+.+  +
T Consensus       320 l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~  397 (443)
T PRK08360        320 IEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFS--G  397 (443)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecC--C
Confidence            98889999999999999999999988899999999999999999987654444544556778899999999987543  5


Q ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          451 NVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       451 ~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.+||+||+++|++|||+++++|++++++
T Consensus       398 ~~lr~~P~l~~t~~~id~~~~~l~~~l~~  426 (443)
T PRK08360        398 NVLRIQPPLTIEKEVLDEGLDILEEAIED  426 (443)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999998864

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=6.5e-71  Score=563.94  Aligned_cols=411  Identities=32%  Similarity=0.453  Sum_probs=352.2

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccC
Q 011669           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYL  139 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~  139 (480)
                      .+++++..+++......+  .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.|... .+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~--~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~   81 (421)
T PRK06777          4 SELNQRRLEATPRGVGVM--CDFYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVP   81 (421)
T ss_pred             HHHHHHHHHhcccccCcC--CCeeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccC
Confidence            456666666664443322  38999999999999999999999999999999999999999999999999876533 356


Q ss_pred             ChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Cccccc-c-
Q 011669          140 NHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNV-V-  215 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~-~-  215 (480)
                      ++...+|+++|++..|. +.++++|+||||||||.|||+||.+++|.+||.++++|||++.+++++++.. .++... + 
T Consensus        82 ~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~  161 (421)
T PRK06777         82 YASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPF  161 (421)
T ss_pred             ChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCC
Confidence            88899999999999873 4679999999999999999999999999999999999999999999988752 243332 1 


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc-cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ..++.++++|+.+++.   ....+++.++++++. ..++++++||+||+|+++|..+++++|+++|+++|++||+++|+|
T Consensus       162 ~~~~~~~~~p~~~~~~---~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~D  238 (421)
T PRK06777        162 PGSIFHALYPNELHGV---SVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIAD  238 (421)
T ss_pred             CCCcEEcCCCccccCc---CHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence            2456667776544321   223345677887763 235689999999999999998999999999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD  374 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~  374 (480)
                      |||+||||+| .+|+++++++.||++|+||++++|+|+||+++++++++.+....+.+||++||++|++++++|+.++++
T Consensus       239 Ev~tg~gr~g-~~~~~~~~~~~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~  317 (421)
T PRK06777        239 EVQTGFARTG-KLFAMEYYDVKPDLITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEE  317 (421)
T ss_pred             chhhCCccCC-chhhhhhcCCCCCEEeeehhhcCCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence            9999999999 788888899999999999999999999999999999998887778899999999999999999999889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEE
Q 011669          375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFR  454 (480)
Q Consensus       375 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR  454 (480)
                      ++.+++++++++++++|+++..+++.+.+++|.|+|+++++..+. +..+.......+.+.|+++||++.+++.+++++|
T Consensus       318 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr  396 (421)
T PRK06777        318 KLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQ-TGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIR  396 (421)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCc-cCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEE
Confidence            999999999999999999998888999999999999999986532 1223344566778888999999999877778999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          455 ITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       455 i~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      |.||+++|++++++++++|++++.
T Consensus       397 ~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        397 FLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999875

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=5.7e-71  Score=567.93  Aligned_cols=417  Identities=38%  Similarity=0.560  Sum_probs=358.4

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-cc
Q 011669           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VL  137 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~  137 (480)
                      .+.+++++..+++.+....++ .|+++++++|+|+||.|||+||||++|+++++|||+||+|.+|+.+|++++.+.. ..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~   82 (433)
T PRK08117          4 TWSDLVERYPQLLAPALAKDH-PNLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGV   82 (433)
T ss_pred             CHHHHHHHHHHHhhhhccccC-CCceEEeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc
Confidence            345677777776655432222 2489999999999999999999999999999999999999999999999987654 34


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccC-CCcccc-cc
Q 011669          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNWKFN-VV  215 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~-~~  215 (480)
                      +.++...+|+++|++.+|...++|+|+|||+|||+.|||+||.++++.+||+++++|||++.+++++++. ..++.. .+
T Consensus        83 ~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~  162 (433)
T PRK08117         83 IYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQP  162 (433)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCC
Confidence            6788999999999999977788999999999999999999999999999999999999999999988763 223222 22


Q ss_pred             -CCCeeEecCCCCcCCCCCCChH----HHHHHHHHHHHc-cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669          216 -QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       216 -~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                       ..++..+++|+.++++++.+..    .+.+++++++++ ..++++++||+||+|+++|.+.++++||++|+++|+|||+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~  242 (433)
T PRK08117        163 LLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGI  242 (433)
T ss_pred             CCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCC
Confidence             3678888888877766543221    245677777764 2246899999999999999999999999999999999999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      ++|+||||+||||+| .+|+++++++.||++||||++++|+|+|++++++++++.+....+++||++||+++++++++|+
T Consensus       243 llI~DEv~tG~gr~G-~~~~~~~~gv~pDi~t~sK~lg~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~  321 (433)
T PRK08117        243 LLIFDEVQTGFGRTG-EWFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLE  321 (433)
T ss_pred             EEEEecchhccCccc-cchhHhhcCCCCCEeehhhhccCCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence            999999999999999 7777788899999999999999999999999999999988776788999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY  449 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~  449 (480)
                      .++++++.+++++++++++++|+++..+++.+.++++.|+|+++++..+.  ..++......+.+.|+++||++.+.+..
T Consensus       322 ~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~--~~~~~~~~~~~~~~l~~~Gv~~~~~g~~  399 (433)
T PRK08117        322 VIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPD--GEPDGDAVEKILDKCLEKGLLFYLCGNA  399 (433)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCC--CCcchHHHHHHHHHHHHCCCEEeecCCC
Confidence            99888999999999999999999998888988999999999999997643  2234445677889999999999876555


Q ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          450 GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       450 ~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++++||+||+++|+++|++++++|++++++
T Consensus       400 ~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~  429 (433)
T PRK08117        400 GNVLRMIPPLTVTKEEIDEGLDILDEALTE  429 (433)
T ss_pred             CCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999865

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=100.00  E-value=5.5e-71  Score=565.48  Aligned_cols=397  Identities=33%  Similarity=0.483  Sum_probs=347.1

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCC-C
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPG-N  157 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~-~  157 (480)
                      +.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.|... .+.++...+++++|++..|. +
T Consensus        14 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~   93 (420)
T TIGR00700        14 TLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSG   93 (420)
T ss_pred             CCCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCC
Confidence            458999999999999999999999999999999999999999999999999876543 35678899999999999984 4


Q ss_pred             CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Ccccccc--CCCeeEecCCCCcCCCCCC
Q 011669          158 LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV--QTGVHHALNPDPYRGVFGA  234 (480)
Q Consensus       158 ~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~--~~g~~~~~~p~~~~~~~~~  234 (480)
                      .++|+|++|||||||.|||+||.+++|.+||+++++|||++.+++++++.. .++..+.  .+++..+++|++++.++..
T Consensus        94 ~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (420)
T TIGR00700        94 PKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLD  173 (420)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccc
Confidence            679999999999999999999999999999999999999999999988752 2332221  2567778888777654321


Q ss_pred             C---hHHHHHHHHHHHH-ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc
Q 011669          235 D---GEMYAKDVQDLID-FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF  310 (480)
Q Consensus       235 d---~~~~~~~le~~i~-~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~  310 (480)
                      .   ...+++.+++++. ...++++++||+||+|+++|.++++++|+++|+++|++||+++|+||||+||||+| .+|++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g-~~~a~  252 (420)
T TIGR00700       174 KQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG-AMFAC  252 (420)
T ss_pred             cchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc-hhHHH
Confidence            1   1223556777764 22356899999999999999999999999999999999999999999999999999 78888


Q ss_pred             cccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 011669          311 EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKER  390 (480)
Q Consensus       311 ~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~  390 (480)
                      +++++.||+++|||++++|+|+||+++++++++.+....+.+||++||++|++++++|+.++++++.+++++++++++++
T Consensus       253 ~~~~~~pDi~~lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~  332 (420)
T TIGR00700       253 EHEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDR  332 (420)
T ss_pred             hhcCCCCCEEEeeccccCCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999988777788999999999999999999999999999999999999999


Q ss_pred             HHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHH
Q 011669          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       391 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l  470 (480)
                      |+++.++++.+..+++.|+|+++++.++ ....|+......+.+.|+++||++.+++.+++++||+||++++++++++++
T Consensus       333 L~~l~~~~~~~~~vrg~G~~~~i~~~~~-~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~  411 (420)
T TIGR00700       333 LTTLKAVDPRIGDVRGLGAMIAVELVDP-GTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGL  411 (420)
T ss_pred             HHHHHhhCCCEEEeeccceEEEEEEecC-CCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHH
Confidence            9999888898999999999999999743 223345555677888899999999998777789999999999999999999


Q ss_pred             HHHHHHHh
Q 011669          471 DVMDYSLS  478 (480)
Q Consensus       471 ~~l~~~l~  478 (480)
                      ++|+++++
T Consensus       412 ~~l~~~l~  419 (420)
T TIGR00700       412 DILCAILA  419 (420)
T ss_pred             HHHHHHhh
Confidence            99999875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06149 hypothetical protein; Provisional

Probab=100.00  E-value=7.7e-71  Score=612.46  Aligned_cols=420  Identities=42%  Similarity=0.701  Sum_probs=365.8

Q ss_pred             CCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 011669           57 GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (480)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~  136 (480)
                      .+++.++++++++++.+....+++.|+.+++|+|+|+||.|||+||||++|+  .++||+||+|++|+.+|+.++.+. .
T Consensus       543 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~~~--~~lGh~hp~v~~Ai~~q~~~l~~~-~  619 (972)
T PRK06149        543 PPDAAALLARRDASFARVQKHYYADPPQIERGWRHHLFDMAGRSYLDMVNNV--TVLGHGHPRLAAAAARQWSLLNTN-S  619 (972)
T ss_pred             CCCHHHHHHHHHHhhccchhhcccCCCeEEEeeeeEEEeCCCCEEEECCCCc--cccCCCCHHHHHHHHHHHHhcccc-c
Confidence            3677899999988887766566778899999999999999999999999886  479999999999999999987553 3


Q ss_pred             ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc---
Q 011669          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN---  213 (480)
Q Consensus       137 ~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~---  213 (480)
                      .+.++...+|+++|++.+|.++++|+|+|||||||+.|||+||.++++.+||+++++|||++.+++++++.......   
T Consensus       620 ~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~  699 (972)
T PRK06149        620 RFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALE  699 (972)
T ss_pred             cccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccC
Confidence            45678899999999999997789999999999999999999999999999999999999999999887653211111   


Q ss_pred             ccCCCeeEecCCCCcCCCCCCC--hHHHHHHHHHHHHc--cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669          214 VVQTGVHHALNPDPYRGVFGAD--GEMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d--~~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                      ....++..++.|+.++++|+.+  ...+.+++++.++.  ...+++++||+||+||++|.+++|++||++|+++|++||+
T Consensus       700 ~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~  779 (972)
T PRK06149        700 TRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGG  779 (972)
T ss_pred             CCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCC
Confidence            1123677788888888888532  23445565555542  1246899999999999999999999999999999999999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC-CCccccCCCcHHHHHHHHHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-RNYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~-~~~~~t~~~~~~~~aaa~a~L  368 (480)
                      ++|+|||||||||+|..+|+++++|+.|||+||||++|||+|+|++++++++++.+.. ..+++|+++||++|++++++|
T Consensus       780 llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L  859 (972)
T PRK06149        780 VCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVL  859 (972)
T ss_pred             EEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHH
Confidence            9999999999999994478999999999999999999999999999999999998864 345688999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF  448 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  448 (480)
                      ++++++++.+++++++++++++|+++.++++.+.++||.|+|++++++.+..++.|+......+++.|+++||++.+.+.
T Consensus       860 ~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~  939 (972)
T PRK06149        860 DVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGD  939 (972)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCC
Confidence            99999999999999999999999999999999999999999999999876555556556677899999999999998876


Q ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          449 YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       449 ~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..+++||.||+++|+++||+++++|++++.+
T Consensus       940 ~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        940 HLNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            6789999999999999999999999999875

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=100.00  E-value=7.9e-71  Score=564.78  Aligned_cols=393  Identities=27%  Similarity=0.440  Sum_probs=339.7

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNL  158 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~~  158 (480)
                      +.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.|... .+.++...+++++|++.+|.++
T Consensus        27 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~  106 (442)
T PRK13360         27 KAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGL  106 (442)
T ss_pred             CCCceEEeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCC
Confidence            357999999999999999999999999999999999999999999999998866544 3568999999999999998778


Q ss_pred             CEEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCCCcccccc--CCCeeEecCCC-CcC
Q 011669          159 KVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPD-PYR  229 (480)
Q Consensus       159 ~~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~g~~~~~~p~-~~~  229 (480)
                      ++|+|+||||||||.|+|+||.++      +|.+||+|+++|||++.+++++++...++..+.  ..++.+++.+. .++
T Consensus       107 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~  186 (442)
T PRK13360        107 NHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLAR  186 (442)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhc
Confidence            899999999999999999999985      577999999999999999999998665544332  24566666663 355


Q ss_pred             CCCCCCh----HHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC
Q 011669          230 GVFGADG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS  305 (480)
Q Consensus       230 ~~~~~d~----~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~  305 (480)
                      ++|..+.    ..+.++++++++...++++++||+||+|+++|.+.++++||++|+++|++||+++|+|||||||||+| 
T Consensus       187 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG-  265 (442)
T PRK13360        187 NAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLG-  265 (442)
T ss_pred             cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc-
Confidence            5554321    23466788888754456899999999999999999999999999999999999999999999999999 


Q ss_pred             CcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-------CccccCCCcHHHHHHHHHHHHHhhhhHHH
Q 011669          306 HFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQ  377 (480)
Q Consensus       306 ~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-------~~~~t~~~~~~~~aaa~a~L~~i~~~~~~  377 (480)
                      .+|+++++++.||++||||+++|| +|+|++++++++++.+...       .+.+||++||++|++++++|++++++++.
T Consensus       266 ~~~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~  345 (442)
T PRK13360        266 APFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLL  345 (442)
T ss_pred             cchhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHH
Confidence            788899999999999999999988 7999999999999877532       36689999999999999999999989999


Q ss_pred             HHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeC
Q 011669          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITP  457 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p  457 (480)
                      ++++++++++++.|+++. +++.+.++||.|++++++++.....  + ......+.+.|+++||++.+.   ++.+||+|
T Consensus       346 ~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~~~~l~~~~~~--~-~~~~~~~~~~l~~~Gvl~~~~---~~~lr~~P  418 (442)
T PRK13360        346 TRAARLAPYWEDALHSLR-DAPHVIDIRNLGLVGAVELAPRDGK--P-GKRAYEVFLKCFEKGLMIRYT---GDILALSP  418 (442)
T ss_pred             HHHHHHHHHHHHHHHHhh-cCCCeeeeeccceEEEEEEecCCCC--c-chhHHHHHHHHHHCCcEEEec---CCEEEEeC
Confidence            999999999999999884 4788899999999999999753211  1 123456788899999999765   36899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhC
Q 011669          458 PLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      |+++|++|||+++++|+++++++
T Consensus       419 pl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        419 PLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998764

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=100.00  E-value=3.1e-70  Score=558.90  Aligned_cols=410  Identities=29%  Similarity=0.424  Sum_probs=350.0

Q ss_pred             HHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCC
Q 011669           62 EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLN  140 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~  140 (480)
                      ++++....+..+....  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+.+|++++.|... .+.+
T Consensus         5 ~~~~~~~~~~~~~~~~--~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~   82 (421)
T PRK09792          5 EFHQRRLSATPRGVGV--MCNFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPY   82 (421)
T ss_pred             HHHHHHHhhccccccc--CCCeeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCC
Confidence            4555444444333222  237899999999999999999999999999999999999999999999999866533 3568


Q ss_pred             hHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Ccccccc--C
Q 011669          141 HAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV--Q  216 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~--~  216 (480)
                      +...+|+++|++..|. +.++++|++|||||||.|||+||.++++.+||+++++|||++.+++++++.. .++..+.  .
T Consensus        83 ~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~  162 (421)
T PRK09792         83 ESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFP  162 (421)
T ss_pred             HHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCC
Confidence            8899999999999874 3578999999999999999999999999999999999999999999987742 3333322  2


Q ss_pred             CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc-CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      .++..+++|+.+++.   +...+++.++++++.. .++++++||+||+|+++|..++|++|+++|+++|++||+++|+||
T Consensus       163 ~~~~~v~~p~~~~~~---~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DE  239 (421)
T PRK09792        163 GSVYHVPYPSDLHGI---STQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADE  239 (421)
T ss_pred             CCcEEcCCCcccccc---cHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            466777777654321   2233467788888642 245899999999999999998999999999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhH
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK  375 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~  375 (480)
                      ||+||||+| .+|+++++++.||++||||++++|+|+||+++++++++.+....+.+||++||++|++++++|+++++++
T Consensus       240 v~tg~gr~G-~~~a~~~~~~~pDi~t~gK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~  318 (421)
T PRK09792        240 VQSGFARTG-KLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKES  318 (421)
T ss_pred             cccCCCCCC-chhHHHhcCCCCcEEEeehhhcCCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            999999999 7888888999999999999999999999999999999988877788999999999999999999999889


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEE
Q 011669          376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRI  455 (480)
Q Consensus       376 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi  455 (480)
                      +.++++++++++++.|+++.++++.+..++|.|+|+|+++.++. ...++......+.+.|+++||++.+.+..++.|||
T Consensus       319 ~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~-~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl  397 (421)
T PRK09792        319 LCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQ-TGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRF  397 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEecCCc-cCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEE
Confidence            99999999999999999999999999999999999999997432 22333345677899999999999765555789999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHh
Q 011669          456 TPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .||++++++||++++++|+++++
T Consensus       398 ~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        398 LYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             eCCCcCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999885

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.9e-70  Score=558.74  Aligned_cols=381  Identities=24%  Similarity=0.325  Sum_probs=328.8

Q ss_pred             CCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCCCC
Q 011669           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      .|+++++|+|+||||.|||+||||.+|+++.++||+||+|++|+++|++++.|... .+.++...+|+++|++..|.+++
T Consensus        22 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~  101 (422)
T PRK05630         22 RNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLD  101 (422)
T ss_pred             CCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcC
Confidence            58999999999999999999999999999999999999999999999999876544 35688899999999999987788


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCC-Ccccccc--CCCeeEecCCCCcCC
Q 011669          160 VVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV--QTGVHHALNPDPYRG  230 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~--~~g~~~~~~p~~~~~  230 (480)
                      +|+|++|||||||.|||+||.++      +|.+||+++++|||.+.+++++++.. .++..+.  ..++..++.|.....
T Consensus       102 ~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  181 (422)
T PRK05630        102 HVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGS  181 (422)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCC
Confidence            99999999999999999999985      57889999999999999999998642 2222211  134555655532211


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCceEEEEEccc-CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc
Q 011669          231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (480)
Q Consensus       231 ~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~  309 (480)
                      .+ ++.+.+.+.+++++.    +++++||+||+ |+.+|+++++++|+++|+++|++||+++|+|||||||||+| .+|+
T Consensus       182 ~~-~~~~~~~~~~~~~~~----~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG-~~~a  255 (422)
T PRK05630        182 SP-QEISEYLRSLELLID----ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG-ELFA  255 (422)
T ss_pred             Ch-HHHHHHHHHHHHHHh----hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc-hhhH
Confidence            11 233445566777664    48999999996 99999999999999999999999999999999999999999 8999


Q ss_pred             ccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC------CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011669          310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHV  382 (480)
Q Consensus       310 ~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~------~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~  382 (480)
                      ++++++.|||+||||+++|| +|+|++++++++++.+...      .|++||++||++|++++++|++++++++.+++++
T Consensus       256 ~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~  335 (422)
T PRK05630        256 TLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKR  335 (422)
T ss_pred             HHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            99999999999999999999 5999999999999987532      4689999999999999999999999899999999


Q ss_pred             HHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCC
Q 011669          383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT  462 (480)
Q Consensus       383 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t  462 (480)
                      +++++++.|+.+. +++.+.++||.|+|+++++..+.        ....+.+.|+++|+++.+.+   +++||.||+++|
T Consensus       336 ~g~~l~~~L~~l~-~~~~v~~vRg~Gl~~~ie~~~~~--------~~~~~~~~~~~~Gl~~~~~g---~~l~~~PpL~it  403 (422)
T PRK05630        336 IEAELIAGLSPLA-HLPGVADVRVLGAIGVVEMEQPV--------DMEEATQAAVDHGVWLRPFG---RLVYVMPPYITT  403 (422)
T ss_pred             HHHHHHHHHHHhh-cCCCeeeeeccccEEEEEECCcc--------cHHHHHHHHHHCCeEEEecC---CEEEEECCccCC
Confidence            9999999999875 47889999999999999995421        13467888999999998753   799999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011669          463 KEDADYLVDVMDYSLSK  479 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~~  479 (480)
                      ++|||+++++|+++++.
T Consensus       404 ~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        404 SEQIAQICAALAAAVKA  420 (422)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999999864

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=100.00  E-value=3.5e-70  Score=560.45  Aligned_cols=393  Identities=30%  Similarity=0.461  Sum_probs=339.2

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNL  158 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~~  158 (480)
                      +.|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+++|++++.|.+. .+.++...+|+++|++.+|.++
T Consensus        30 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~  109 (445)
T PRK09221         30 AAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGL  109 (445)
T ss_pred             CCCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            358999999999999999999999999999999999999999999999999876554 3668999999999999998778


Q ss_pred             CEEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCCCcccccc--CCCeeEecCCC-CcC
Q 011669          159 KVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPD-PYR  229 (480)
Q Consensus       159 ~~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~g~~~~~~p~-~~~  229 (480)
                      ++|+|+||||||||.|+|+||.++      ++.+||+++++|||++.+++++++.+.++..+.  ..++..+++|. .++
T Consensus       110 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (445)
T PRK09221        110 DHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPE  189 (445)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccc
Confidence            899999999999999999999885      467899999999999999999988655443322  24566677665 455


Q ss_pred             CCCCCCh----HHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC
Q 011669          230 GVFGADG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS  305 (480)
Q Consensus       230 ~~~~~d~----~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~  305 (480)
                      ++|....    ..+.++++++++....+++++||+||+|+++|.+.++++||++|+++|++||+++|+|||||||||+| 
T Consensus       190 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG-  268 (445)
T PRK09221        190 NAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLG-  268 (445)
T ss_pred             cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCc-
Confidence            5554321    22456788888754446899999999999999999999999999999999999999999999999999 


Q ss_pred             CcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-------CccccCCCcHHHHHHHHHHHHHhhhhHHH
Q 011669          306 HFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQ  377 (480)
Q Consensus       306 ~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-------~~~~t~~~~~~~~aaa~a~L~~i~~~~~~  377 (480)
                      .+|+++++++.||++|+||+++|| +|+|++++++++++.+...       .+.+||++||+++++++++|++++++++.
T Consensus       269 ~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~  348 (445)
T PRK09221        269 AAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLF  348 (445)
T ss_pred             hhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHH
Confidence            788999999999999999999998 7999999999999887531       36689999999999999999999989999


Q ss_pred             HHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeC
Q 011669          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITP  457 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p  457 (480)
                      +++++++++++++|+++. +++.+.++||.|+|+++++......  + ......+.+.|+++||++.++   ++.+||+|
T Consensus       349 ~~~~~~g~~l~~~l~~l~-~~~~v~~vrg~Gl~~~v~~~~~~~~--~-~~~~~~~~~~~~~~Gv~~~~~---~~~lr~~P  421 (445)
T PRK09221        349 ERAAELAPYFEDAVHSLK-GLPHVIDIRNIGLVAGIELAPRPGA--P-GARGYEAFMKCFEKGLLVRYT---GDTIALSP  421 (445)
T ss_pred             HHHHHHHHHHHHHHHhhc-cCCCEEEEecCceEEEEEEeccccc--c-cchHHHHHHHHHHCCeEEeec---CCEEEEEC
Confidence            999999999999999984 5788899999999999999753211  1 123456888999999999765   47899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhC
Q 011669          458 PLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      |+++|++|||+++++|++++.++
T Consensus       422 pl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        422 PLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998763

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=100.00  E-value=6.4e-70  Score=555.61  Aligned_cols=405  Identities=25%  Similarity=0.381  Sum_probs=333.7

Q ss_pred             CCCCCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHH--H
Q 011669           51 SPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQ--I  128 (480)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~--~  128 (480)
                      -+.+.++|++.+++++..+++...   .+..|+.+++|+|+||||.|||+||||++|++++++||+||+|++|+.+|  .
T Consensus        13 ~~~~~~~~~s~~l~~~~~~~~~~~---~~~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~   89 (464)
T TIGR00699        13 MKTEIPGPKSKAAMKQLNEVFDAR---AVHFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMA   89 (464)
T ss_pred             cccCCCCccHHHHHHHHHhhhccc---CcccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHH
Confidence            334566789999999988775332   12458999999999999999999999999999999999999999999985  4


Q ss_pred             HhccccccccCChHHHHHHHHHHH----hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcC---------------------
Q 011669          129 KRIQHSTVLYLNHAIADFAEALAS----KMPGNLKVVFFTNSGTEANELAIMMARLYTG---------------------  183 (480)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l~e~L~~----~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~---------------------  183 (480)
                      ..+.+.. .+.++...+++++|.+    .+|.++++|+|+||||||||.|||+||.|++                     
T Consensus        90 ~~l~~~~-~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~  168 (464)
T TIGR00699        90 TTLINRP-ALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDN  168 (464)
T ss_pred             Hhhcccc-cCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccc
Confidence            4444433 3667788889999854    6777788999999999999999999998732                     


Q ss_pred             ------CceEEEEcCCcccccccccccccCCCccc-cccCCCeeEecCCCCcCCCCCC-----C--hHHHHHHHHHHHHc
Q 011669          184 ------CNDIISLRNAYHGNAAGTMGATAQSNWKF-NVVQTGVHHALNPDPYRGVFGA-----D--GEMYAKDVQDLIDF  249 (480)
Q Consensus       184 ------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~-~~~~~g~~~~~~p~~~~~~~~~-----d--~~~~~~~le~~i~~  249 (480)
                            +.+||+|.++|||++.+++++++.+.++. ..+..++.++++|+ +++++..     +  ...+++.++++++.
T Consensus       169 ~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~l~~l~~~l~~  247 (464)
T TIGR00699       169 QAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPS-LKYPLEEHVKENAKEEQRCLEEVEDLIKK  247 (464)
T ss_pred             cccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCC-cccccccccccchhHHHHHHHHHHHHHHh
Confidence                  23899999999999999999988654332 22234566777765 3433321     1  22356778888874


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCC--cceeeeccccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV--PDIVTMAKGIG  327 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~--pDivt~sK~~g  327 (480)
                      . .+++++||+||+|+++|.++++++||++|+++|++||++||+|||||||||+| .+|+++++|+.  |||+|+||+++
T Consensus       248 ~-~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG-~~fa~e~~gv~~~PDi~t~gK~lg  325 (464)
T TIGR00699       248 W-HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATG-KFWAHEHWNLDDPPDMVTFSKKFQ  325 (464)
T ss_pred             c-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCc-chhHHHhcCCCCCCCEEEehhhhc
Confidence            3 45799999999999999999999999999999999999999999999999999 89999999997  99999999996


Q ss_pred             -cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC-ceeeEe
Q 011669          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVR  405 (480)
Q Consensus       328 -~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~  405 (480)
                       +|+.    +.++ .+.......+++||++||++|++++++|+.++++++.+++++++++++++|+++.++++ .+.++|
T Consensus       326 ~gG~~----~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vR  400 (464)
T TIGR00699       326 TAGYF----FHDP-AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLR  400 (464)
T ss_pred             cCCcc----ccch-hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Confidence             6753    2332 22212234578999999999999999999999999999999999999999999988898 789999


Q ss_pred             --ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          406 --GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       406 --g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                        |.|+|+++++.        +......+.+.|+++|+++.+.+  .+.|||.||+++|++|||+++++|++++
T Consensus       401 g~G~Glm~gie~~--------~~~~~~~i~~~~~~~Gvl~~~~g--~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       401 GKGRGTFIAWDTP--------DEAKRDKLLKKARNNGVNIGGCG--VKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             ccCeEEEEEEecC--------CHHHHHHHHHHHHHCCcEEecCC--CCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence              99999999982        22335778899999999998754  4799999999999999999999999864

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=5.1e-70  Score=556.21  Aligned_cols=401  Identities=24%  Similarity=0.374  Sum_probs=337.8

Q ss_pred             HHHHHHhhhcCCccccc-cCCC-eEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-cc
Q 011669           62 EILAKRKTFLSPSLFHL-YSKP-LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LY  138 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~~-~~~p-~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~  138 (480)
                      ++++...+++++..... ...| +.+++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.|... .+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~   84 (429)
T PRK06173          5 ELLELDRQHIWHPYSSVTDPIPVYPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGF   84 (429)
T ss_pred             HHhhhhhcccccccccccccCCCceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCcccccc
Confidence            45555556654432221 1234 469999999999999999999999999999999999999999999999876544 46


Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCC-Ccc
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQS-NWK  211 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~  211 (480)
                      .++...+|+++|++.+|.++++|+|++|||||||.|||+||.+      ++|.+||+++++|||.+.+++++++.. .++
T Consensus        85 ~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~  164 (429)
T PRK06173         85 THEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMH  164 (429)
T ss_pred             CCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhh
Confidence            7899999999999999877899999999999999999999988      468899999999999999999987642 233


Q ss_pred             cccc--CCCeeEecCCCCcCCCCCCC-hHHHHHHHHHHHHccCCCceEEEEEccc-CCCCcceeCCCChHHHHHHHHHHh
Q 011669          212 FNVV--QTGVHHALNPDPYRGVFGAD-GEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKA  287 (480)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~~d-~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~  287 (480)
                      ..+.  ..++..++.|+.+   ++.+ .+.+++.++++++.. ++++++||+||+ ||++|.+++|++|+++|+++|++|
T Consensus       165 ~~~~~~~~~~~~~~~p~~~---~~~~~~~~~l~~l~~~i~~~-~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~  240 (429)
T PRK06173        165 GLFNHSLPVQYFLPQPSIK---FGEEWNDEAIEPLQDLLEQK-GDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY  240 (429)
T ss_pred             hcccccCCCCeEeCCCCcc---cchhHHHHHHHHHHHHHHhC-CCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc
Confidence            2222  2355566665432   1111 123466778888643 468999999997 999999999999999999999999


Q ss_pred             CCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC-----CCccccCCCcHHHH
Q 011669          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-----RNYFNTFGGNPVCT  361 (480)
Q Consensus       288 gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~-----~~~~~t~~~~~~~~  361 (480)
                      |+++|+||||+||||+| .+|+++++|+.|||+||||+++|| +|++++++++++++.+..     ..+++||++||++|
T Consensus       241 g~llI~DEv~tG~GrtG-~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~  319 (429)
T PRK06173        241 GVLLIFDEIATGFGRTG-KLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLAC  319 (429)
T ss_pred             CCeEEecchhcCCCcCC-cchHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHH
Confidence            99999999999999999 788899999999999999999999 599999999999998753     24778999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCc
Q 011669          362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGV  441 (480)
Q Consensus       362 aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  441 (480)
                      ++++++|++++++++.+++++++++|+++|+++ .+++.+.++|+.|+|+++++....        ....+.+.|+++||
T Consensus       320 aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~-~~~~~v~~vRg~Gl~~~iel~~~~--------~~~~i~~~l~e~Gi  390 (429)
T PRK06173        320 AIAAESIRLLLESPWQQNIQRIEAQLKQELAPA-AEFDSVAEVRVLGAIGVVEMKEPV--------NMATLQPRFVEHGI  390 (429)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-hcCCCeeeeeccceEEEEEeCCcc--------cHHHHHHHHHHCCe
Confidence            999999999999899999999999999999987 457888899999999999995321        14568889999999


Q ss_pred             eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++.+.+   +++||.||+++|++|+|+++++|++++.+
T Consensus       391 ~v~~~g---~~l~~~Ppl~it~~ei~~~~~~l~~~l~~  425 (429)
T PRK06173        391 WVRPFG---KLVYIMPPFIISPDELSQLTSGLLRVLKQ  425 (429)
T ss_pred             EEEecC---CEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            998754   79999999999999999999999999864

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=100.00  E-value=1.2e-69  Score=552.79  Aligned_cols=381  Identities=26%  Similarity=0.380  Sum_probs=330.1

Q ss_pred             CeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCCCCE
Q 011669           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNLKV  160 (480)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~~~~  160 (480)
                      |+.+++|+|+|+||.|||+||||.+|++++++||+||+|++|+++|++++.|... .+.++...+|+++|++..|.++++
T Consensus        26 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~  105 (428)
T PRK07986         26 VYPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLEC  105 (428)
T ss_pred             CeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCE
Confidence            4789999999999999999999999999999999999999999999999876544 357899999999999999877889


Q ss_pred             EEEeCCHHHHHHHHHHHHHhh-----cCCceEEEEcCCcccccccccccccCC-Ccccccc--CCCeeEecCCCCcCC-C
Q 011669          161 VFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV--QTGVHHALNPDPYRG-V  231 (480)
Q Consensus       161 v~f~~sGseA~~~Alk~ar~~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~--~~g~~~~~~p~~~~~-~  231 (480)
                      |+|+||||||||.|||+||.+     +++.+||+++++|||.+.+++++++.. .++..+.  .+++..++.|+.+.. .
T Consensus       106 v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  185 (428)
T PRK07986        106 VFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGE  185 (428)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchh
Confidence            999999999999999999998     578899999999999999999987632 2222221  245556665543211 0


Q ss_pred             CCCChHHHHHHHHHHHHccCCCceEEEEEccc-CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc
Q 011669          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF  310 (480)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~  310 (480)
                      |.   ...+++++++++.. ++++++||+||+ |+.+|+++++++||++|+++|++||+++|+||||+||||+| .+|++
T Consensus       186 ~~---~~d~~~l~~~l~~~-~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG-~~fa~  260 (428)
T PRK07986        186 WD---ERDIAPFARLMAAH-RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG-KLFAC  260 (428)
T ss_pred             hH---HHHHHHHHHHHHhC-CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC-Ceeee
Confidence            10   12256778778643 458999999996 99999999999999999999999999999999999999999 78899


Q ss_pred             cccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-----CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011669          311 EAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVG  384 (480)
Q Consensus       311 ~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-----~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~  384 (480)
                      +++|+.||++|+||+++|| +|+|++++++++++.+...     .+++||++||++|++++++|++++++++.+++++++
T Consensus       261 ~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g  340 (428)
T PRK07986        261 EHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIE  340 (428)
T ss_pred             cccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999999999 6999999999999988653     377899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHH
Q 011669          385 SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE  464 (480)
Q Consensus       385 ~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~  464 (480)
                      ++++++|+++. +++.+.++||.|+|+++++..+.        ....+.+.|+++||++.+.+   +++||.||+++|++
T Consensus       341 ~~l~~~l~~l~-~~~~i~~vRg~Gl~~~ve~~~~~--------~~~~~~~~l~~~Gl~~~~~g---~~i~~~Ppl~it~~  408 (428)
T PRK07986        341 AQLREELAPLR-DAPMVADVRVLGAIGVVETTRPV--------NMAALQRFFVEQGVWIRPFG---KLIYLMPPYIILPE  408 (428)
T ss_pred             HHHHHHHHHHh-cCCCEEeEeccceEEEEEeCCcc--------cHHHHHHHHHHCCcEEEecC---CEEEEeCCCCCCHH
Confidence            99999999986 48889999999999999985421        14568889999999998754   79999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 011669          465 DADYLVDVMDYSLSK  479 (480)
Q Consensus       465 ~id~~l~~l~~~l~~  479 (480)
                      ||++++++|++++++
T Consensus       409 ei~~~~~~l~~~l~~  423 (428)
T PRK07986        409 QLQRLTAAVNRAVQD  423 (428)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999864

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=7.6e-69  Score=545.15  Aligned_cols=374  Identities=30%  Similarity=0.522  Sum_probs=330.9

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      +.|+++.+|+|+||||+|||+||||.+|++++++||+||+|.+|+.+|++++.|....+.++...+|+++|++..|. .+
T Consensus        21 ~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~-~~   99 (408)
T PRK04612         21 PRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRF-AE   99 (408)
T ss_pred             CCCceEEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCC-CC
Confidence            45799999999999999999999999999999999999999999999999987766556788899999999999875 37


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhc---C----CceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCC
Q 011669          160 VVFFTNSGTEANELAIMMARLYT---G----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRG  230 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~---~----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~  230 (480)
                      +|+|++|||||||.|||+||.++   +    +.+||.|+++|||++.+++++++.+.++..+..  .++..++++     
T Consensus       100 ~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----  174 (408)
T PRK04612        100 KVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFN-----  174 (408)
T ss_pred             EEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCC-----
Confidence            99999999999999999999984   3    567999999999999999999886655433321  344444332     


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc
Q 011669          231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF  310 (480)
Q Consensus       231 ~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~  310 (480)
                          |    .+.++++++   .+++++||+||+|++||++.++++|+++|+++|++||+++|+||||+||||+| .+|+.
T Consensus       175 ----d----~~~l~~~~~---~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~~~a~  242 (408)
T PRK04612        175 ----D----VEALEAAMA---GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG-TLFAH  242 (408)
T ss_pred             ----C----HHHHHHhhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC-chhhh
Confidence                2    467777774   35899999999999999998889999999999999999999999999999999 78887


Q ss_pred             cccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 011669          311 EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKER  390 (480)
Q Consensus       311 ~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~  390 (480)
                      +.+++.||++||||++++|+|+|++++++++++.+....+.+||++||++|++++++|+.++++++.+++++++++++++
T Consensus       243 ~~~~~~pdi~t~~K~l~~G~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~  322 (408)
T PRK04612        243 WQEQVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAG  322 (408)
T ss_pred             hhcCCCCCEEEEcchhcCCCceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            77899999999999999999999999999999888777788999999999999999999999999999999999999999


Q ss_pred             HHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHH
Q 011669          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       391 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l  470 (480)
                      |+++.++++.+.+++|.|+|+++++..+.      ......+.+.|+++||++.+.+  .+.+||.||+++|++||++++
T Consensus       323 l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~------~~~a~~i~~~l~~~Gvlv~~~g--~~~lRl~Ppl~it~eeid~~l  394 (408)
T PRK04612        323 LEALNAEFGVFAQVRGRGLMLGAVLAPAH------AGQAGAILDLAAEHGLLLLQAG--PDVLRFVPALNLTDAELADGL  394 (408)
T ss_pred             HHHHHhhCCCeeeeeccceEEEEEecCch------hhHHHHHHHHHHHCCeEEeeCC--CCEEEEcCCccCCHHHHHHHH
Confidence            99999999999999999999999996421      1235678889999999998764  489999999999999999999


Q ss_pred             HHHHHHHhh
Q 011669          471 DVMDYSLSK  479 (480)
Q Consensus       471 ~~l~~~l~~  479 (480)
                      ++|++++.+
T Consensus       395 ~~l~~~l~~  403 (408)
T PRK04612        395 ARLRLALAD  403 (408)
T ss_pred             HHHHHHHHH
Confidence            999998864

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=100.00  E-value=8.6e-69  Score=546.80  Aligned_cols=384  Identities=26%  Similarity=0.418  Sum_probs=330.4

Q ss_pred             CCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhC--CCC
Q 011669           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKM--PGN  157 (480)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~--~~~  157 (480)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|+++..+... .+.++...+|+++|++..  |.+
T Consensus        17 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~   96 (412)
T TIGR02407        17 FPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRG   96 (412)
T ss_pred             CCceEEecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccC
Confidence            48999999999999999999999999999999999999999999999987654433 345888999999999985  322


Q ss_pred             C-CEEEE-eCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc--cCCCeeEecCCCCcCCCCC
Q 011669          158 L-KVVFF-TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV--VQTGVHHALNPDPYRGVFG  233 (480)
Q Consensus       158 ~-~~v~f-~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~--~~~g~~~~~~p~~~~~~~~  233 (480)
                      . ++++| +||||||||.|||+||.+++|.+||+++++|||++.+++++++.+.++...  +..++..+++|+...    
T Consensus        97 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~----  172 (412)
T TIGR02407        97 LDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLG----  172 (412)
T ss_pred             CCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccc----
Confidence            3 24656 599999999999999999999999999999999999999998765444333  224666666654221    


Q ss_pred             CChHHHHHHHHHHHHccC--CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc
Q 011669          234 ADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (480)
Q Consensus       234 ~d~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~  311 (480)
                       +...+++.+++++++..  .+++++||+||+|+++|.+++|++||++|+++|++||+++|+||||+||||+| .+|+++
T Consensus       173 -~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG-~~~a~~  250 (412)
T TIGR02407       173 -GDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG-TFFSFE  250 (412)
T ss_pred             -cchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-hhHHhc
Confidence             11123567888886432  25789999999999999999999999999999999999999999999999999 788999


Q ss_pred             ccCCCcceeeecccccc-CccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHH
Q 011669          312 AHGVVPDIVTMAKGIGN-GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-IQKDKLQNNAHVVGSYLKE  389 (480)
Q Consensus       312 ~~~~~pDivt~sK~~g~-G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~-i~~~~~~~~~~~~~~~l~~  389 (480)
                      ++++.||++++||++++ |+|+|++++++++ +.+....+.+||++||++|+++.++|+. ++++++.++++++++++++
T Consensus       251 ~~~v~PDi~~~~K~lg~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~  329 (412)
T TIGR02407       251 PAGIEPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQE  329 (412)
T ss_pred             ccCCCCCEEEechhccCCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99999999999999998 9999999999987 6666566889999999999999999995 8888899999999999999


Q ss_pred             HHHHhHHhcC-ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHH
Q 011669          390 RLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADY  468 (480)
Q Consensus       390 ~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~  468 (480)
                      +|+++.++++ .+.++++.|+|+|+++..        ......+.+.|+++||++.+.+.+++.|||+||+++|++|+++
T Consensus       330 ~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~--------~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~  401 (412)
T TIGR02407       330 RLDRIVAEYPELIKQVRGRGLMQGIECGD--------GDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQ  401 (412)
T ss_pred             HHHHHHhhCCCceEeeecceeEEEEEecC--------hHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHH
Confidence            9999998887 678999999999999943        2345678899999999998776666899999999999999999


Q ss_pred             HHHHHHHHHhh
Q 011669          469 LVDVMDYSLSK  479 (480)
Q Consensus       469 ~l~~l~~~l~~  479 (480)
                      ++++|++++++
T Consensus       402 ~~~~l~~~l~~  412 (412)
T TIGR02407       402 GLDILEQAVEE  412 (412)
T ss_pred             HHHHHHHHHhC
Confidence            99999999864

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=100.00  E-value=5.8e-69  Score=536.03  Aligned_cols=356  Identities=33%  Similarity=0.577  Sum_probs=313.4

Q ss_pred             ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC
Q 011669           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN  157 (480)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~  157 (480)
                      .|+.|+.+++|+|+|+||.|||+||||.+|+++.++||+||+|++|+++|++++.+....+.++...+++++|++..  +
T Consensus         3 ~~~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~--~   80 (364)
T PRK04013          3 LYRKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWV--N   80 (364)
T ss_pred             CcCCCccEEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhc--C
Confidence            35778999999999999999999999999999999999999999999999999877666678999999999999997  3


Q ss_pred             CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCCCCCCC
Q 011669          158 LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGAD  235 (480)
Q Consensus       158 ~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d  235 (480)
                      .++++|+||||||++.|+|+||.++++++||+++++|||++.+++++++.+.++....+  .++..++++         |
T Consensus        81 ~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~---------d  151 (364)
T PRK04013         81 YEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFN---------D  151 (364)
T ss_pred             CCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCC---------C
Confidence            57899999999999999999999999999999999999999999999886655443322  344444432         2


Q ss_pred             hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC
Q 011669          236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV  315 (480)
Q Consensus       236 ~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~  315 (480)
                          .+.+++.+.    +++++||+||+|+++|.++++++|+++|+++|++||+++|+||||+|| |+| ++|+++++++
T Consensus       152 ----~~~l~~~i~----~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG-~~~a~~~~gv  221 (364)
T PRK04013        152 ----VEAAKEAIT----KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTG-KFLAIEHYKV  221 (364)
T ss_pred             ----HHHHHHHhc----CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCC-chhHHHhcCC
Confidence                456777774    489999999999999999999999999999999999999999999999 999 7999999999


Q ss_pred             CcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Q 011669          316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK  395 (480)
Q Consensus       316 ~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~  395 (480)
                      .||++|+||+++||+|+|+++.++++    ....+++||++||++|++++++|++++++++.+++++.       |.++.
T Consensus       222 ~PDiv~~gK~lggG~P~~a~~~~~~~----~~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l~~l~  290 (364)
T PRK04013        222 EPDIVTMGKGIGNGVPVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------FIEIK  290 (364)
T ss_pred             CCCEEEecccccCCceeEEEEecccc----cCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------HHHhc
Confidence            99999999999999999999998876    23458899999999999999999999999999988774       33332


Q ss_pred             HhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          396 DKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       396 ~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                        .+.+.++||.|+|+++++..      +    ...+.+.|+++|+++.+.+  .+++||.||+++|++|+++++++|++
T Consensus       291 --~~~v~~vRG~Gl~~gve~~~------~----~~~i~~~~~~~Gll~~~~g--~~vlr~~Ppl~it~~~i~~~~~~l~~  356 (364)
T PRK04013        291 --GERVVTTRGRGLMIGIVLKK------P----VGKYVEELQNRGYLVHTAG--QRVIRLLPPLIISKDTMEEAKSAIEG  356 (364)
T ss_pred             --cCcceeeeeCcEEEEEEeCC------c----HHHHHHHHHhCCcEEeeCC--CCEEEEeCCcccCHHHHHHHHHHHHH
Confidence              26789999999999999953      1    3568888999999998764  48999999999999999999999999


Q ss_pred             HHhh
Q 011669          476 SLSK  479 (480)
Q Consensus       476 ~l~~  479 (480)
                      ++++
T Consensus       357 ~l~~  360 (364)
T PRK04013        357 VIND  360 (364)
T ss_pred             HHHH
Confidence            9875

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=3.6e-68  Score=544.84  Aligned_cols=407  Identities=27%  Similarity=0.390  Sum_probs=340.3

Q ss_pred             CCHHHHHHHHhhhcCCcccc---cc-----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 011669           58 PSADEILAKRKTFLSPSLFH---LY-----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~---~~-----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~  129 (480)
                      +++.+++++.+++++.+...   ++     +.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++
T Consensus         4 ~~s~~~~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~   83 (428)
T PRK12389          4 TKSEALHQEALEHIVGGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAE   83 (428)
T ss_pred             hhhHHHHHHHHhhCCCCCCCccccccccCCCCCeEEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHH
Confidence            57889999999998765422   22     35899999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC
Q 011669          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      ++.+  ..+.++...+++++|++.+| +.++|+|+||||||||.|+|+||.++++.+||.|+++|||++.++++.++...
T Consensus        84 ~~~~--~~~~~~~~~~la~~l~~~~p-~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~  160 (428)
T PRK12389         84 NGVL--YGTPTELEIEFAKMLKEAIP-SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGP  160 (428)
T ss_pred             hCCc--cCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcc
Confidence            8754  23578899999999999988 47899999999999999999999999999999999999999999999887543


Q ss_pred             ccccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669          210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (480)
Q Consensus       210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  288 (480)
                      ++...+. .++.....++.++.+++ |    .+.++++++.. .+++++||+||+|+++|.++|+++||++|+++|++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~-d----~~~l~~~l~~~-~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g  234 (428)
T PRK12389        161 STLGTPDSAGVPKSIAQEVITVPFN-D----IEALKEALDKW-GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAG  234 (428)
T ss_pred             cccCCCCCCCCCCcccCceEEcCCC-C----HHHHHHHHHhc-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            3221111 12221122233333443 3    56788888643 3589999999999999999999999999999999999


Q ss_pred             CEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---CCccccCCCcHHHHHHHH
Q 011669          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAGH  365 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa~  365 (480)
                      +++|+||||||| |+| ..++++++|+.||++|+||+++||+|+|++++++++++.+..   ..+++||++||++|++++
T Consensus       235 ~llI~DEV~tG~-Rt~-~~~a~~~~gv~PDivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaal  312 (428)
T PRK12389        235 ALVIYDEVITAF-RFM-YGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGI  312 (428)
T ss_pred             CEEEEEcccccc-ccC-cchhhHHhCCCCCeeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHH
Confidence            999999999999 998 566778899999999999999999999999999999998853   347799999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-eccceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHc
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEM  439 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~  439 (480)
                      ++|++++++++.+++++++++++++|+++.++++.+.++ ++.| ++++++..+...     ..++......+.+.|+++
T Consensus       313 a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  391 (428)
T PRK12389        313 ACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQ  391 (428)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHC
Confidence            999999988999999999999999999998889887777 7777 778998754321     111333456788899999


Q ss_pred             CceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          440 GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       440 Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ||++.+.+  .+.  +.||+++|++||++++++|+++++++
T Consensus       392 Gv~~~~~~--~~~--~~~~l~~t~e~id~~~~~l~~~l~~~  428 (428)
T PRK12389        392 GINLAPSK--YEA--WFLTTAHTEEDIEETLEAVDRAFAQL  428 (428)
T ss_pred             CcEeecCC--CCC--eeecCCCCHHHHHHHHHHHHHHHHhC
Confidence            99998754  222  35889999999999999999999764

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=100.00  E-value=6.2e-68  Score=544.43  Aligned_cols=409  Identities=25%  Similarity=0.342  Sum_probs=332.4

Q ss_pred             CCCHHHHHHHHhhhcCCcccc---cc----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 011669           57 GPSADEILAKRKTFLSPSLFH---LY----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (480)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~---~~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~  129 (480)
                      .+++.+++++.+++++.+...   ++    ..|+++.+|+|+||||+|||+||||.+|++++++||+||+|.+|+.+|++
T Consensus        50 ~~~S~~l~~ra~~~~pgGv~~~~r~~~~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~  129 (474)
T PLN02482         50 TTKSEEIFKAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMK  129 (474)
T ss_pred             ChHHHHHHHHHHhhCCCCCCCcchhhcccCCCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHh
Confidence            368899999999998654422   12    34899999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC
Q 011669          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      ++.+.  ..+++...+|+|+|++.+|. +++|+|+||||||++.|||+||.+|+|.+||.|+++|||++...........
T Consensus       130 ~~~~~--~~~~~~~~~lAe~l~~~~p~-~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~  206 (474)
T PLN02482        130 KGTSF--GAPCLLENVLAEMVIDAVPS-VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGV  206 (474)
T ss_pred             hCCCC--CCCCHHHHHHHHHHHHhCCC-CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCc
Confidence            87542  34678899999999999986 7899999999999999999999999999999999999998866543322111


Q ss_pred             cccccc-CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669          210 WKFNVV-QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (480)
Q Consensus       210 ~~~~~~-~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  288 (480)
                      .....+ ..+++....++.+..+|+ |    .+.++++++.. ++++++||+||+++++|.++|+++||++|+++|++||
T Consensus       207 ~~~~~~~~~g~~~~~~~~~~~~~~n-d----~~~l~~~l~~~-~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g  280 (474)
T PLN02482        207 ATLGLPDSPGVPKAATSATLTAPYN-D----LEAVKKLFEAN-KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENG  280 (474)
T ss_pred             cccCCCCCCCCCCCCCCCeEEecCC-C----hHHHHHHHHhC-CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            111111 123322222233344553 4    56788888653 4689999999999999999999999999999999999


Q ss_pred             CEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---CCccccCCCcHHHHHHHH
Q 011669          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAGH  365 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa~  365 (480)
                      +++|+|||++|| |+| .+++++++|+.||++||||++|||+|+|++++++++++.+..   ..+++||++||+++++++
T Consensus       281 ~lLI~DEV~tGf-R~g-~~ga~~~~gv~PDi~t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAal  358 (474)
T PLN02482        281 ALLVFDEVMTGF-RIA-YGGAQEYFGITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGI  358 (474)
T ss_pred             CEEEEeccccCe-ecC-cchHhHHhCCCCCEEEecchhhCCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHH
Confidence            999999999999 999 678888899999999999999999999999999999998863   246789999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCC-----cCCCCHHHHHHHHHHHHHcC
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKEMG  440 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~G  440 (480)
                      ++|++++++++.+++++++++++++|+++..+++....+.+.+.|++++|..+..     ...++......+.+.|+++|
T Consensus       359 a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~G  438 (474)
T PLN02482        359 HTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEG  438 (474)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCC
Confidence            9999998889999999999999999999987764332222323388888875421     11233445667889999999


Q ss_pred             ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      |++.+.+...   + .||+++|++|||+++++++++++++
T Consensus       439 v~~~~~~~~~---~-~psl~ht~~dId~~l~al~~~l~~~  474 (474)
T PLN02482        439 VYLAPSQFEA---G-FTSLAHTEEDIDFTIAAAERVLARI  474 (474)
T ss_pred             eEEeccCCCC---C-cCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            9998754211   2 3899999999999999999998764

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=100.00  E-value=3e-68  Score=545.37  Aligned_cols=384  Identities=28%  Similarity=0.464  Sum_probs=329.5

Q ss_pred             CCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhC--CCC
Q 011669           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKM--PGN  157 (480)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~--~~~  157 (480)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|.+|+++|+++..+... .+.++...+|+++|++.+  |.+
T Consensus        21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~  100 (425)
T PRK09264         21 FPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRG  100 (425)
T ss_pred             CCccEEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcC
Confidence            58999999999999999999999999999999999999999999999997654433 346788899999999975  333


Q ss_pred             CC-EEEE-eCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc--cCCCeeEecCCCCcCCCCC
Q 011669          158 LK-VVFF-TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV--VQTGVHHALNPDPYRGVFG  233 (480)
Q Consensus       158 ~~-~v~f-~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~--~~~g~~~~~~p~~~~~~~~  233 (480)
                      .+ +++| +||||||||.|||+||.+++|.+||+++++|||++.+++++++++.++...  +..++.++++|+.+++.  
T Consensus       101 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--  178 (425)
T PRK09264        101 LDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGD--  178 (425)
T ss_pred             CCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccc--
Confidence            43 5666 589999999999999999999999999999999999999998866554332  22467777776543221  


Q ss_pred             CChHHHHHHHHHHHHccC--CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc
Q 011669          234 ADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (480)
Q Consensus       234 ~d~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~  311 (480)
                         ...++++++++++..  .+++++||+||+|+++|+++++++||++|+++|++||+++|+||||+||||+| .+|+++
T Consensus       179 ---~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG-~~~~~~  254 (425)
T PRK09264        179 ---VDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG-TFFSFE  254 (425)
T ss_pred             ---hhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc-HHHHHh
Confidence               112567888886432  24799999999999999999999999999999999999999999999999999 788889


Q ss_pred             ccCCCcceeeecccccc-CccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHH
Q 011669          312 AHGVVPDIVTMAKGIGN-GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL-KVIQKDKLQNNAHVVGSYLKE  389 (480)
Q Consensus       312 ~~~~~pDivt~sK~~g~-G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L-~~i~~~~~~~~~~~~~~~l~~  389 (480)
                      ++++.||++|+||++++ |+|+|++++++++. .+....+.+||++||+++++++++| ++++++++.++++++++++++
T Consensus       255 ~~~v~PDi~t~~K~l~~~G~pigav~~~~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~  333 (425)
T PRK09264        255 RAGITPDIVTLSKSISGYGLPMALVLIKPELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRE  333 (425)
T ss_pred             hcCCCCCEEEeccccCCCccceEEEEEchhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            99999999999999998 99999999999974 5555567889999999999999999 666777899999999999999


Q ss_pred             HHHHhHHhcCc-eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHH
Q 011669          390 RLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADY  468 (480)
Q Consensus       390 ~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~  468 (480)
                      +|+++.++++. +.+++|.|+|+++++..        ......+.+.|+++||++.+.+.+.+.|||+||+++|+++|++
T Consensus       334 ~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~--------~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~  405 (425)
T PRK09264        334 RLEEIAAKYPGLGAEVRGRGMMQGIDFGD--------GELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEE  405 (425)
T ss_pred             HHHHHHHhCCCceecceecccEEEEEecC--------hHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHH
Confidence            99999888874 48899999999999942        2345678899999999998876666899999999999999999


Q ss_pred             HHHHHHHHHhh
Q 011669          469 LVDVMDYSLSK  479 (480)
Q Consensus       469 ~l~~l~~~l~~  479 (480)
                      ++++|++++++
T Consensus       406 ~~~~l~~~l~~  416 (425)
T PRK09264        406 GLDILEEAVAE  416 (425)
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=9.8e-68  Score=516.02  Aligned_cols=409  Identities=27%  Similarity=0.411  Sum_probs=339.9

Q ss_pred             CCCHHHHHHHHhhhcCCccc----cccC---CCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 011669           57 GPSADEILAKRKTFLSPSLF----HLYS---KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (480)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~----~~~~---~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~  129 (480)
                      .++++++.++.+++++.++.    .+..   .|+++.+|+|+||||+|||+|||++++++.+.|||+||.|++|+.+|++
T Consensus         4 ~~~S~~l~~~A~~~~pGGvnspvra~~~v~~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~   83 (432)
T COG0001           4 FPKSEALFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLE   83 (432)
T ss_pred             ccchHHHHHHHhhhCCCCCCccccccCCCCCCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHH
Confidence            36788999999999865442    1223   6999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC
Q 011669          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      +...  ..-+++...+++|.|.+++|. .++|.|+||||||+..|||+||.+|+|++||.|+|+|||+.+..+.-.+...
T Consensus        84 ~G~~--fg~Pte~Ei~~Aell~~~~p~-~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~  160 (432)
T COG0001          84 RGLS--FGAPTELEVELAELLIERVPS-IEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGA  160 (432)
T ss_pred             hcCC--CCCCCHHHHHHHHHHHHhcCc-ccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCc
Confidence            9733  334688999999999999985 6899999999999999999999999999999999999999999987655333


Q ss_pred             ccccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669          210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (480)
Q Consensus       210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  288 (480)
                      -....|. +|++.....+..-.+|+ |    ++.+++++++. .+++|+||+||++++.|.++|.++||++|++||++||
T Consensus       161 ~t~g~p~s~Gvp~~~a~~ti~~~yN-D----~~al~~~~~~~-g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G  234 (432)
T COG0001         161 ATLGSPSSPGVPADVAKHTLVLPYN-D----LEALEEAFEEY-GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHG  234 (432)
T ss_pred             ccCCCCCCCCCChhhhccEEEecCC-C----HHHHHHHHHHc-CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            2222232 34433322233333443 5    67888888864 4699999999999999999999999999999999999


Q ss_pred             CEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCC---ccccCCCcHHHHHHHH
Q 011669          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN---YFNTFGGNPVCTAAGH  365 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~---~~~t~~~~~~~~aaa~  365 (480)
                      ++||+|||.||| |.. ...+.+.+|+.||+.||+|.+|||+|+|++.+++++|+.+.+..   +.+|+++||++++|+.
T Consensus       235 ~lLI~DEViTGF-R~~-~gGaq~~~gi~PDlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~  312 (432)
T COG0001         235 ALLIFDEVITGF-RVA-LGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGL  312 (432)
T ss_pred             cEEEEecchhhc-ccC-CcccccccCcCcchhhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHH
Confidence            999999999999 433 22346789999999999999999999999999999999887643   5699999999999999


Q ss_pred             HHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHc
Q 011669          366 AVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEM  439 (480)
Q Consensus       366 a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~  439 (480)
                      ++|+.+.+ +..++++.+.+++|+++|+++.+++++...+...|.|+.+.|......     ...+......+.+.|+++
T Consensus       313 atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~  392 (432)
T COG0001         313 ATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR  392 (432)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC
Confidence            99999987 458999999999999999999999999999999999999998764311     111223345667799999


Q ss_pred             CceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          440 GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       440 Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ||++.|... +..+ ++  ..+|+++||+.+++++++++++
T Consensus       393 GV~l~ps~~-ea~f-lS--~ahte~di~~~~~a~~~~~~~~  429 (432)
T COG0001         393 GVYLAPSQF-EAGF-LS--TAHTEEDIDRTLEAADEAFKEL  429 (432)
T ss_pred             CcccCCccc-ccee-ee--cccCHHHHHHHHHHHHHHHHHh
Confidence            999988642 2222 44  6899999999999999988753

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.7e-67  Score=540.61  Aligned_cols=384  Identities=29%  Similarity=0.468  Sum_probs=332.6

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNL  158 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~~  158 (480)
                      ..|+++.+|+|+||||.|||+||||.+|++++++||+||+|.+|+++|++++.+... .+.++...+|+++|++.+|.++
T Consensus        23 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~  102 (423)
T PRK05964         23 PPPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGL  102 (423)
T ss_pred             CCCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            358999999999999999999999999999999999999999999999999866543 4678889999999999998778


Q ss_pred             CEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCC
Q 011669          159 KVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRG  230 (480)
Q Consensus       159 ~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~  230 (480)
                      ++|+|++|||||||.|+|+||.+      ++|.+||+++++|||++.+++++++.+.++.....  .++..+++|..   
T Consensus       103 ~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~---  179 (423)
T PRK05964        103 DHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPD---  179 (423)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcc---
Confidence            89999999999999999999998      67899999999999999999998876544332221  34555555431   


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc
Q 011669          231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (480)
Q Consensus       231 ~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~  309 (480)
                         +....+++.++++++.. ++++++||+|| +|+++|+.+++++||++|+++|++||+++|+||||+||||+| .+|+
T Consensus       180 ---d~~~~~~~~l~~~l~~~-~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G-~~~a  254 (423)
T PRK05964        180 ---GYEQATLDALEALLEKH-AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG-TLFA  254 (423)
T ss_pred             ---hhHHHHHHHHHHHHHhC-CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc-chhH
Confidence               11234467788888643 46899999999 799999999999999999999999999999999999999999 7888


Q ss_pred             ccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC------CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011669          310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHV  382 (480)
Q Consensus       310 ~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~------~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~  382 (480)
                      ++.+++.||++++||+++|| +|+|++++++++++.+...      .+++||++||+++++++++|++++++++.+++++
T Consensus       255 ~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~  334 (423)
T PRK05964        255 CEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAA  334 (423)
T ss_pred             HHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            89999999999999999988 8999999999999987532      3678999999999999999999998899999999


Q ss_pred             HHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCC
Q 011669          383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT  462 (480)
Q Consensus       383 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t  462 (480)
                      +++++++.|+++. +++.+.++++.|+|+++++..+..     ......+.+.|.++||++.+.   ++.+||+||+++|
T Consensus       335 ~g~~l~~~l~~l~-~~~~i~~vrg~Gl~~~i~l~~~~~-----~~~~~~l~~~l~~~Gv~v~~~---~~~lR~~p~l~~t  405 (423)
T PRK05964        335 LSAGLAEGLEPFR-DLPGVADVRVLGAIGAVELDRPVL-----ERDGPALRAFALERGVLLRPL---GNTIYLMPPYIIT  405 (423)
T ss_pred             HHHHHHHHHHhhc-cCCCeEEeecccEEEEEEeccCcc-----hhHHHHHHHHHHHCCeEEEec---CCEEEEeCCcccC
Confidence            9999999999884 477788899999999999964321     123567888999999999875   3689999999999


Q ss_pred             HHHHHHHHHHHHHHHhhC
Q 011669          463 KEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~~~  480 (480)
                      ++|||+++++|+++++++
T Consensus       406 ~edId~~v~~l~~al~~~  423 (423)
T PRK05964        406 AEELDRITDAIVEVADEL  423 (423)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999999875

>PLN00144 acetylornithine transaminase

Probab=100.00  E-value=2e-67  Score=532.00  Aligned_cols=366  Identities=33%  Similarity=0.547  Sum_probs=325.2

Q ss_pred             EEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEe
Q 011669           85 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFT  164 (480)
Q Consensus        85 ~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~  164 (480)
                      +++|+|+|+||.|||+||||.+|++++++||+||+|++|+.+|++++.+....+.++...+|+++|++..+  .++|+|+
T Consensus         1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~f~   78 (382)
T PLN00144          1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSF--ADRVFFC   78 (382)
T ss_pred             CeeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCC--CCeEEEe
Confidence            46899999999999999999999999999999999999999999998776655668899999999999874  5799999


Q ss_pred             CCHHHHHHHHHHHHHhhcC-------------CceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcC
Q 011669          165 NSGTEANELAIMMARLYTG-------------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYR  229 (480)
Q Consensus       165 ~sGseA~~~Alk~ar~~~~-------------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~  229 (480)
                      +|||||||.|||+||.+++             +.+||+++++|||++.+++++++...++..+..  +++.+++++    
T Consensus        79 ~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~----  154 (382)
T PLN00144         79 NSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYG----  154 (382)
T ss_pred             CCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCC----
Confidence            9999999999999999875             468999999999999999999886655433221  455555432    


Q ss_pred             CCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc
Q 011669          230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (480)
Q Consensus       230 ~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~  309 (480)
                           |    .+.+++++.   .+++++||+||+||++|.+.++++|+++|+++|++||+++|+||||+||||+| .+|+
T Consensus       155 -----d----~~~l~~~~~---~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g-~~~~  221 (382)
T PLN00144        155 -----N----LEAARKLIQ---KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG-YLWA  221 (382)
T ss_pred             -----C----HHHHHHhcC---CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-hHhh
Confidence                 2    567777774   35899999999999999998899999999999999999999999999999999 6888


Q ss_pred             ccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011669          310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE  389 (480)
Q Consensus       310 ~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~  389 (480)
                      ++.+++.||++||||++++|+|+|++++++++++.+....+.+||++||++|++++++|++++++++.++++++++++++
T Consensus       222 ~~~~~~~PDi~t~sK~l~~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~  301 (382)
T PLN00144        222 HEAYGVEPDIMTLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRE  301 (382)
T ss_pred             hhhcCCCCCEEEecccccCCcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999887778899999999999999999999999999999999999999


Q ss_pred             HHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHH
Q 011669          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       390 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~  469 (480)
                      .|+++.++++.+.++++.|+|+|+++..      +    ...+.+.++++||++.+++. ++.|||+||+++|+++++++
T Consensus       302 ~l~~~~~~~~~~~~vrg~G~~~~l~l~~------~----~~~~~~~~~~~Gv~i~~~~~-~~~lrl~p~~~~~~~~i~~~  370 (382)
T PLN00144        302 LLRRKLGGNPHVKEVRGVGLLVGIQLDV------P----AGPLVDACRDSGLLVLTAGK-GDVVRLVPPLVISEAELEQA  370 (382)
T ss_pred             HHHHHHhhCCCceeeecCceEEEEEecC------c----cHHHHHHHHHCCeEEeecCC-CCEEEEeCCCccCHHHHHHH
Confidence            9999988888889999999999999921      1    25688899999999988753 48999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 011669          470 VDVMDYSLSKM  480 (480)
Q Consensus       470 l~~l~~~l~~~  480 (480)
                      +++|++++.++
T Consensus       371 ~~~l~~~l~~~  381 (382)
T PLN00144        371 VEILADCLPAL  381 (382)
T ss_pred             HHHHHHHHHhc
Confidence            99999998753

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=100.00  E-value=1.1e-66  Score=530.62  Aligned_cols=372  Identities=30%  Similarity=0.536  Sum_probs=328.7

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      +.|+++.+|+|+|+||.|||+||||.+|+++.+|||+||+|.+|+.+|++++.+....+.++...+|+++|++..+  .+
T Consensus        16 ~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~~--~~   93 (397)
T TIGR03246        16 PAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATF--AD   93 (397)
T ss_pred             CCCceEEEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCC--CC
Confidence            4589999999999999999999999999999999999999999999999987555445678889999999999985  46


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCCCcccccc--CCCeeEecCCCCcCCC
Q 011669          160 VVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGV  231 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~g~~~~~~p~~~~~~  231 (480)
                      +++|+|||+|||+.|||+||.++      ++.+||+++++|||++.+++++++.+.++....  ..++..++++      
T Consensus        94 ~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  167 (397)
T TIGR03246        94 KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN------  167 (397)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCC------
Confidence            89999999999999999999985      788999999999999999999887654433222  2355555433      


Q ss_pred             CCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc
Q 011669          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (480)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~  311 (480)
                         |    .++++++++    +++++||+||+|+++|.++++++||++|+++|++||+++|+||||+||||+| .+|+++
T Consensus       168 ---d----~~~l~~~l~----~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G-~~~a~~  235 (397)
T TIGR03246       168 ---D----LAAAKALIS----DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYM  235 (397)
T ss_pred             ---C----HHHHHHHhc----cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccc-cchhhh
Confidence               3    577888774    3799999999999999999999999999999999999999999999999999 788888


Q ss_pred             ccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011669          312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (480)
Q Consensus       312 ~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L  391 (480)
                      ++++.||++|+||++++|+|+||+++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++++++|
T Consensus       236 ~~gv~pDi~t~~K~lggG~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L  315 (397)
T TIGR03246       236 HYGVTPDILTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGL  315 (397)
T ss_pred             hcCCCCCEEEeehhhhCCcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999987767789999999999999999999988889999999999999999


Q ss_pred             HHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHH
Q 011669          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       392 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~  471 (480)
                      +++..+++.+.++++.|+++++++..+      .......+++.|+++|+++.+.+  .+++||+||+++|++||+++++
T Consensus       316 ~~l~~~~~~~~~vrg~G~~~~i~~~~~------~~~~~~~~~~~l~~~Gv~~~~~g--~~~lR~~p~~~~t~~~i~~~~~  387 (397)
T TIGR03246       316 EKINARYNVFSEIRGKGLLIGAVLTEA------YQGKAKQFVNAAAEEGVIALIAG--PNVVRFAPSLVISDDDIDEGLA  387 (397)
T ss_pred             HHHHhcCCCeEeeecCceEEEEEEcCc------hhhHHHHHHHHHHHCCeEEeecC--CCEEEEeCCCCCCHHHHHHHHH
Confidence            999877888899999999999998542      11235678899999999998754  4789999999999999999999


Q ss_pred             HHHHHHhh
Q 011669          472 VMDYSLSK  479 (480)
Q Consensus       472 ~l~~~l~~  479 (480)
                      +|++++.+
T Consensus       388 ~l~~~l~~  395 (397)
T TIGR03246       388 RFERAIEQ  395 (397)
T ss_pred             HHHHHHHH
Confidence            99999875

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=100.00  E-value=2.2e-66  Score=532.09  Aligned_cols=382  Identities=28%  Similarity=0.421  Sum_probs=315.4

Q ss_pred             CeEEEeeeccEEEeC-CCCEEEeccCCcccccCCCCCHHHHH--HHHHHHHhccc--cc-cccCChHHHHHHHHHHHhC-
Q 011669           82 PLNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVD--SIVNQIKRIQH--ST-VLYLNHAIADFAEALASKM-  154 (480)
Q Consensus        82 p~~~~~g~G~~l~d~-dG~~ylD~~~g~~~~~lGh~~p~v~~--A~~~~~~~~~~--~~-~~~~~~~~~~l~e~L~~~~-  154 (480)
                      ++.+++|+|+||||. |||+||||.+|++++++||+||+|++  |+++|+.++.+  .. ..+.++...+++++|++.. 
T Consensus        27 ~~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~  106 (443)
T PRK08297         27 VLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLG  106 (443)
T ss_pred             ceEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcC
Confidence            355899999999996 99999999999999999999999999  99999998653  22 2467889999999999998 


Q ss_pred             CCCCCEEEEeCCHHHHHHHHHHHHHhhc------------CCceEEEEcCCcccccccccccccCCCccc-cccCCCeeE
Q 011669          155 PGNLKVVFFTNSGTEANELAIMMARLYT------------GCNDIISLRNAYHGNAAGTMGATAQSNWKF-NVVQTGVHH  221 (480)
Q Consensus       155 ~~~~~~v~f~~sGseA~~~Alk~ar~~~------------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~-~~~~~g~~~  221 (480)
                      |.++++|+|+||||||||.|||+||.|+            +|.+||+++++|||++.+++++++...++. ..+..+...
T Consensus       107 p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~  186 (443)
T PRK08297        107 DPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPR  186 (443)
T ss_pred             CCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccc
Confidence            6667899999999999999999999873            257899999999999999999987533221 112112222


Q ss_pred             ecCCCCcCCCCC-CC-------hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          222 ALNPDPYRGVFG-AD-------GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       222 ~~~p~~~~~~~~-~d-------~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                      ++.|.. ..++. .+       ...++++++++++.. ++++++||+||+|+++|.++||++||++|+++|++||+++|+
T Consensus       187 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~  264 (443)
T PRK08297        187 IDNPKL-RFPLPGEDLEEVEALEAEALAQARAAFERH-PHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIF  264 (443)
T ss_pred             cCCCCC-CCCCcccccchhhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence            222221 11110 01       112356677777653 568999999999999999999999999999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhh----c-CCCccccCCCcHHHHHHHHHHH
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL----T-RRNYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l----~-~~~~~~t~~~~~~~~aaa~a~L  368 (480)
                      |||||||||+| .+|+++++++.||++||||++    |+|+++..+++.+..    . ...+++||++||++|++++++|
T Consensus       265 DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gK~l----~~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L  339 (443)
T PRK08297        265 DEVQTGVGLTG-TAWAYQQLGVRPDIVAFGKKT----QVCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRIL  339 (443)
T ss_pred             echhhccCccc-hHHHHHhcCCCCCEEEecccc----cccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHH
Confidence            99999999999 899999999999999999997    456666666654322    1 2347899999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee-eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG  447 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  447 (480)
                      ++++++++.+++++++++++++|+++.++++.+. +++|.|+|+++++.+        ......+.+.|+++||++.+.+
T Consensus       340 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~--------~~~~~~~~~~l~~~Gvl~~~~~  411 (443)
T PRK08297        340 EVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPT--------TADRDEVIRRLWEEGVLVLPCG  411 (443)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecC--------HHHHHHHHHHHHHCCEEEecCC
Confidence            9999999999999999999999999998898665 999999999999942        2235678889999999998765


Q ss_pred             cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          448 FYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       448 ~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                        .+.+||+||+++|++|||+++++|+++++++
T Consensus       412 --~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        412 --ERSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             --CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence              4689999999999999999999999998764

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.5e-67  Score=498.69  Aligned_cols=378  Identities=33%  Similarity=0.508  Sum_probs=324.4

Q ss_pred             ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC-C
Q 011669           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP-G  156 (480)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~-~  156 (480)
                      +-+.|+++++++|+.+||.||++||||++++++..+||+||+|.+|+.+|+.++.|+.+.+......++++.|.+... .
T Consensus        35 ~a~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~eav~l~~~l~~~~~~~  114 (433)
T KOG1401|consen   35 YARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLEAVELEEVLSAVLGKG  114 (433)
T ss_pred             cCCCceeeecceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHHHHHHHHHHHhcccCC
Confidence            445689999999999999999999999999999999999999999999999999998887776668999999999874 3


Q ss_pred             CCCEEEEeCCHHHHHHHHHHHHHhhcCCce------EEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCc
Q 011669          157 NLKVVFFTNSGTEANELAIMMARLYTGCND------IISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPY  228 (480)
Q Consensus       157 ~~~~v~f~~sGseA~~~Alk~ar~~~~~~~------ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~  228 (480)
                      ..++|+|+||||||||.|||+||+++..+.      +|.|+++|||.+++++++++++.|+.+..+  +++....+    
T Consensus       115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~y----  190 (433)
T KOG1401|consen  115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEY----  190 (433)
T ss_pred             CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeeccc----
Confidence            578999999999999999999999876544      999999999999999999988887765433  44444332    


Q ss_pred             CCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcc
Q 011669          229 RGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW  308 (480)
Q Consensus       229 ~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~  308 (480)
                           +|    ..+++++++.+ .++++|||+||+||+||.+++.++|+..|+++|+++|++||.|||||||||+| ..|
T Consensus       191 -----nd----~t~l~k~~~~h-~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g-~~~  259 (433)
T KOG1401|consen  191 -----ND----STALEKLFESH-KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG-YGW  259 (433)
T ss_pred             -----CC----HHHHHHHHHhC-CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccc-hHH
Confidence                 23    57889999865 45799999999999999999999999999999999999999999999999999 899


Q ss_pred             cccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCc---cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 011669          309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY---FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS  385 (480)
Q Consensus       309 ~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~---~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~  385 (480)
                      ++++++++|||.|++|.++||+|+|++++++++++.+....+   ++||++||++|.++..+|+.+.+.++.+++.+.++
T Consensus       260 a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k  339 (433)
T KOG1401|consen  260 AQEYFGVTPDITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGK  339 (433)
T ss_pred             HHHHhCcCCcceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988765   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHhcCceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeC--CCC
Q 011669          386 YLKERLTALKDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITP--PLC  460 (480)
Q Consensus       386 ~l~~~L~~l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p--~~~  460 (480)
                      .|+++|.+...+.+.... .+++|+++++++..+          ...+.+...+.|.++.+.+.  -...+||.|  .++
T Consensus       340 ~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p----------~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~  409 (433)
T KOG1401|consen  340 ELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGP----------VYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLT  409 (433)
T ss_pred             HHHHHHHHHhccCCCceeeeeeeEEEEEEEEeec----------hhhhhhhhhhhhHHHHHHhcccccceEEEecccccc
Confidence            999999998888765433 389999999988643          22334444445555544321  113478887  445


Q ss_pred             C--CHHHHHHHHHHHHHHHhhC
Q 011669          461 F--TKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       461 ~--t~~~id~~l~~l~~~l~~~  480 (480)
                      +  ++|.++++++++.+.+.++
T Consensus       410 ~~~~~E~i~~~l~i~~~~l~~~  431 (433)
T KOG1401|consen  410 VEHTPEVIQRLLTILEKVLSAL  431 (433)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHh
Confidence            4  4899999999999988753

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=2.7e-66  Score=525.25  Aligned_cols=368  Identities=33%  Similarity=0.588  Sum_probs=317.1

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      +.|+++++++|+|+||.|||+||||++|+++.++||+||+|.+|+.+|++++.+.+..+.++...+|+++|.+..  +.+
T Consensus        17 ~~~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~--~~~   94 (395)
T PRK03715         17 RPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHS--CFD   94 (395)
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhcc--CCC
Confidence            457899999999999999999999999999999999999999999999998877655567888999999999875  357


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhc-----CCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCCCC
Q 011669          160 VVFFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVF  232 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~~  232 (480)
                      +++|++||+|||+.|+|++|.++     ++.+||+++++|||++.+++++++.+.++....+  .++.+.++        
T Consensus        95 ~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~--------  166 (395)
T PRK03715         95 KVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAEL--------  166 (395)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCC--------
Confidence            89999999999999999999873     5688999999999999999999876544432211  23333221        


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA  312 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~  312 (480)
                       +|    .+++++.++    +++++||+||+|+++|.++++++|+++|+++|++||+++|+||||+||||+| .+|++++
T Consensus       167 -~d----~~~l~~~l~----~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG-~~~a~~~  236 (395)
T PRK03715        167 -ND----IASVEKLIT----DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG-TLFAYEL  236 (395)
T ss_pred             -ch----HHHHHHHcC----CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc-chhhHhh
Confidence             12    567777774    3799999999999999999999999999999999999999999999999999 8889999


Q ss_pred             cCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011669          313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       313 ~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~  392 (480)
                      +++.||++|+||++++|+|+|+++++++++. +....+++||++||++|++++++|++++++++.+++++++++++++|+
T Consensus       237 ~gv~PDi~t~gK~lg~G~p~~av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~  315 (395)
T PRK03715        237 SGIEPDIMTLGKGIGGGVPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLL  315 (395)
T ss_pred             cCCCCceeeehhhhhCCcceEEEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999863 444457899999999999999999999988999999999999999999


Q ss_pred             HhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc---CceeeccCcCCCEEEEeCCCCCCHHHHHHH
Q 011669          393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM---GVLVGKGGFYGNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       393 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~---Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~  469 (480)
                      ++..+++ +.+++|.|+|+++++..+         ....+.+.+.+.   |+++.+..  .+.+||+||+++|++|||++
T Consensus       316 ~l~~~~~-i~~vrG~Glm~~i~l~~~---------~~~~~~~~~~~~~~~Gi~~~~~~--~~~lR~~p~l~~t~~ei~~~  383 (395)
T PRK03715        316 ELSEERG-LEGERGEGLLRALLLGKD---------IGPQIVEKARDMQPDGLLLNAPR--PNLLRFMPALNVTTEEIDQM  383 (395)
T ss_pred             HHhhcCC-cCeEEcceeEEEEEecCc---------hHHHHHHHHHhccCCCEEEeecC--CCEEEEeCCcccCHHHHHHH
Confidence            9988777 677999999999999542         123445555555   99987543  57899999999999999999


Q ss_pred             HHHHHHHHhhC
Q 011669          470 VDVMDYSLSKM  480 (480)
Q Consensus       470 l~~l~~~l~~~  480 (480)
                      +++|+++++++
T Consensus       384 ~~~l~~~l~~~  394 (395)
T PRK03715        384 IAMLRSVLDKL  394 (395)
T ss_pred             HHHHHHHHHhh
Confidence            99999998753

>PRK07046 aminotransferase; Validated

Probab=100.00  E-value=1.3e-65  Score=526.84  Aligned_cols=401  Identities=22%  Similarity=0.285  Sum_probs=327.6

Q ss_pred             CCHHHHHHHHhhhcCCcc-cc---cc--CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhc
Q 011669           58 PSADEILAKRKTFLSPSL-FH---LY--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI  131 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~~---~~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~  131 (480)
                      ++|.+++++.+++++.+. ..   .+  ..|+++++|+|+|+||+|||+||||.+|++++++||+||+|.+|+.+|++++
T Consensus        28 ~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~  107 (453)
T PRK07046         28 PRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRG  107 (453)
T ss_pred             hhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHhC
Confidence            578899999999987654 22   12  4589999999999999999999999999999999999999999999999987


Q ss_pred             cccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccc--cCCC
Q 011669          132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGAT--AQSN  209 (480)
Q Consensus       132 ~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~--~~~~  209 (480)
                      .+  ..+.++...+|+|+|++..+  .++|+|+||||||++.|+|+||.+|+|++||.|+++|||++++++...  +...
T Consensus       108 ~~--~~~~~~~~~~lAe~l~~~~~--~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~  183 (453)
T PRK07046        108 LT--TMLPSEDAAWVGEELARRFG--LPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPV  183 (453)
T ss_pred             CC--CCCCCHHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCC
Confidence            44  34578999999999999984  689999999999999999999999999999999999999987776542  2111


Q ss_pred             ccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669          210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       210 ~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                      ++...  .++.....++....+|+ |    .+.+++++.   .+++++||+||+|+++|.++|+++||++|+++|+|||+
T Consensus       184 ~~~~~--~g~~~~~~~~~~~~~~n-d----~~~l~~~l~---~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~  253 (453)
T PRK07046        184 QRPGL--LGQVHDLTATTRVVEFN-D----LAALEAALA---DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGT  253 (453)
T ss_pred             CCCCC--CCCCccccCceEeeCCC-C----HHHHHHHhC---CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCC
Confidence            11111  11111001112223443 4    567887774   35899999999999999999999999999999999999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---------CCccccCCCcHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---------RNYFNTFGGNPVC  360 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---------~~~~~t~~~~~~~  360 (480)
                      ++|+|||+| | |.| .....+++|+.||++||||++|||+|+|++++++++++.+..         ..+.+||++||++
T Consensus       254 llI~DEV~t-f-r~g-~Gg~~~~~gv~PDi~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~  330 (453)
T PRK07046        254 LLVIDETHT-I-SSG-PGGYTRAHGLEPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALA  330 (453)
T ss_pred             EEEEEcccc-C-ccC-CcchhHHhCCCccceeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHH
Confidence            999999998 4 343 111245679999999999999999999999999999998752         1366899999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcC-----CC-CHHHHHHHHH
Q 011669          361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK-----TP-AKAETLYIMD  434 (480)
Q Consensus       361 ~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~-----~~-~~~~~~~~~~  434 (480)
                      |++++++|++++++++.+++++++++|+++|+++.++++.+..++|.|+++.+.+.++....     .+ +......++.
T Consensus       331 ~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (453)
T PRK07046        331 MAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHL  410 (453)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHH
Confidence            99999999999888999999999999999999999999989999999999999886432100     01 2334566788


Q ss_pred             HHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          435 KMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       435 ~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      .|+++||++.+.   ++.++++|+  +|++|||+++++++++++++
T Consensus       411 ~~~~~Gv~~~~~---~~~~~~~p~--~t~~did~~~~~~~~~l~~~  451 (453)
T PRK07046        411 YLLNRGVLITPF---HNMMLVCPA--TTAADVDRLVAAFDACLGEL  451 (453)
T ss_pred             HHHHCCCEEecc---cCcEEEeCC--CCHHHHHHHHHHHHHHHHHH
Confidence            899999999864   356889975  89999999999999998753

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=100.00  E-value=1.5e-65  Score=523.64  Aligned_cols=372  Identities=31%  Similarity=0.539  Sum_probs=326.7

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      +.|+++++|+|+||||.|||+||||.+|+++++|||+||+|++|+.+|+.++.+....+.++...+|+++|++..+  .+
T Consensus        20 ~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~   97 (406)
T PRK12381         20 PAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--AD   97 (406)
T ss_pred             CCCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCC--CC
Confidence            4578999999999999999999999999999999999999999999999987665555678889999999999874  46


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCCC
Q 011669          160 VVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGV  231 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~  231 (480)
                      +|+|++||+|||+.|+|+||.++      ++.+|+.++++|||++.+++++++.+.++.....  .++..++++      
T Consensus        98 ~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  171 (406)
T PRK12381         98 RVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYN------  171 (406)
T ss_pred             eEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCC------
Confidence            99999999999999999999985      6889999999999999999999886655432211  233333322      


Q ss_pred             CCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc
Q 011669          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (480)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~  311 (480)
                         |    .++++++++    +++++||+||+|+++|+++++++|+++|+++|++||+++|+||||+||||+| .+|+++
T Consensus       172 ---d----~~~l~~~l~----~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G-~~~~~~  239 (406)
T PRK12381        172 ---D----LNSASALID----DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYM  239 (406)
T ss_pred             ---C----HHHHHHhcc----CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc-chhhhH
Confidence               3    567777774    4799999999999999998899999999999999999999999999999999 677778


Q ss_pred             ccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011669          312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (480)
Q Consensus       312 ~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L  391 (480)
                      .+++.||++||||++++|+|+||+++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++++++|
T Consensus       240 ~~~v~pDi~t~sK~l~gG~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L  319 (406)
T PRK12381        240 HYGVTPDVLTTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL  319 (406)
T ss_pred             hhCCCCCEEEehhhhhCCCceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999988777889999999999999999999988889999999999999999


Q ss_pred             HHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHH
Q 011669          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       392 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~  471 (480)
                      +++..+++.+..+++.|+|+++++..+.      ......+.+.|+++||++.+.+  .+.+||+||+++|+++|+++++
T Consensus       320 ~~l~~~~~~~~~vrg~Gl~~~~~l~~~~------~~~~~~~~~~l~~~Gv~v~~~g--~~~lRl~p~~~~t~~~i~~~~~  391 (406)
T PRK12381        320 NTINARYGLFSEIRGLGLLIGCVLNAEY------AGKAKQISQEAAKAGVMVLIAG--PNVVRFAPALNISEEEITTGLD  391 (406)
T ss_pred             HHHHhhCCCEEEEecCeEEEEEEecCch------hhHHHHHHHHHHHCCcEEeeCC--CCEEEEeCCccCCHHHHHHHHH
Confidence            9997778888899999999999985421      1235678889999999997654  4789999999999999999999


Q ss_pred             HHHHHHhh
Q 011669          472 VMDYSLSK  479 (480)
Q Consensus       472 ~l~~~l~~  479 (480)
                      +|++++++
T Consensus       392 ~l~~~l~~  399 (406)
T PRK12381        392 RFARACER  399 (406)
T ss_pred             HHHHHHHH
Confidence            99998864

>PLN02624 ornithine-delta-aminotransferase

Probab=100.00  E-value=6.5e-65  Score=525.97  Aligned_cols=395  Identities=27%  Similarity=0.469  Sum_probs=339.9

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 011669           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~  138 (480)
                      .+.++++..+++..+.   +++.|+++.+++|+|+||.||++||||++|++++++||+||+|++|+++|++++.+.+..+
T Consensus        38 ~~~~~~~~~~~~~~~~---~~~~p~~~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~  114 (474)
T PLN02624         38 SSAHLIELEEKYSAHN---YHPIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAF  114 (474)
T ss_pred             chHHHHHHHHHhhccc---cCCCCceEEeeeeCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCccccc
Confidence            4567888877775553   4466899999999999999999999999999999999999999999999999987766567


Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc--------CCceEEEEcCCcccccccccccccCCCc
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--------GCNDIISLRNAYHGNAAGTMGATAQSNW  210 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~--------~~~~ii~~~~~yhG~~~~~~~~~~~~~~  210 (480)
                      .++...+|+++|++.++  .++++|+|||+||||.|||+||.++        ++..||.+.++|||++.+++++++.+.+
T Consensus       115 ~~~~~~~la~~L~~~~~--~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~  192 (474)
T PLN02624        115 YNDKFPEFAEYLTSMFG--YDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEA  192 (474)
T ss_pred             CCHHHHHHHHHHHhhcC--CCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccc
Confidence            78999999999999984  5789999999999999999999863        2457999999999999999999876544


Q ss_pred             ccccc--CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669          211 KFNVV--QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (480)
Q Consensus       211 ~~~~~--~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  288 (480)
                      +..+.  .+++..+++.         |    .+.++++++.. .+++++||+||+|+++|.+.++++||++|+++|++||
T Consensus       193 ~~~~~~~~~~~~~~~~~---------d----~~~l~~~l~~~-~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~g  258 (474)
T PLN02624        193 TRGFGPLLPGHLKVDFG---------D----LDALEKIFEED-GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHN  258 (474)
T ss_pred             cccCCCCCCCceEeCCC---------C----HHHHHHHHHhC-CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            43321  1344444332         3    46788888643 4589999999999999999999999999999999999


Q ss_pred             CEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHH
Q 011669          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~  367 (480)
                      +++|+||||+||||+| .+++++++++.||+++|||++++| +|+|++++++++++.+.+..++.||++||++++++.++
T Consensus       259 illI~DEv~tG~GrtG-~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aa  337 (474)
T PLN02624        259 VLMIADEIQTGLARTG-KMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAA  337 (474)
T ss_pred             CEEEEeccccCcCcCc-chhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHH
Confidence            9999999999999999 788888889999999999999977 89999999999998887777889999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC-ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG  446 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  446 (480)
                      |+.++++++.+++.+++++++++|+++.++++ .+.++++.|+|+++++..+.    +.......+++.|+++||++.++
T Consensus       338 Le~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~----~~~~~a~~~~~~L~e~GV~v~p~  413 (474)
T PLN02624        338 LQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPK----LGPVSAYDVCLKLKERGLLAKPT  413 (474)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCC----cChHHHHHHHHHHHhCCeEEecC
Confidence            99998888999999999999999999988887 47789999999999884321    11234567888899999999886


Q ss_pred             CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          447 GFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       447 ~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +  ++++||+||+++|+++|++++++|++++++
T Consensus       414 ~--~~~lR~~p~l~~t~e~id~~l~~L~~~l~~  444 (474)
T PLN02624        414 H--DTIIRLAPPLSISEDELQECSKALSDVLEH  444 (474)
T ss_pred             C--CCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            5  578999999999999999999999998764

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=6e-65  Score=518.41  Aligned_cols=405  Identities=23%  Similarity=0.301  Sum_probs=330.2

Q ss_pred             CCHHHHHHHHhhhcCCcccc---cc----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHh
Q 011669           58 PSADEILAKRKTFLSPSLFH---LY----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~---~~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~  130 (480)
                      +++.+++++.+++++.+...   ++    ..|+++.+|+|+||||.|||+||||.+|++++++||+||+|++|+.+|+++
T Consensus         5 ~~s~~l~~~a~~~~p~g~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~   84 (433)
T PRK00615          5 QEMTHTFSEACQYFPGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAER   84 (433)
T ss_pred             HHHHHHHHHHHhhCCCCcCCCcccccccCCCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHHh
Confidence            57888999999988665422   23    368999999999999999999999999999999999999999999999998


Q ss_pred             ccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccc---ccccccccC
Q 011669          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA---AGTMGATAQ  207 (480)
Q Consensus       131 ~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~---~~~~~~~~~  207 (480)
                      +.+  ..+.++...+|+++|.+.+|...++|+|++|||||++.|||+||.+|+|.+||.++++|||++   .++++.++.
T Consensus        85 ~~~--~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~  162 (433)
T PRK00615         85 GTS--YGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSET  162 (433)
T ss_pred             CCC--CCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCC
Confidence            643  345688999999999999986667999999999999999999999999999999999999998   555555542


Q ss_pred             CCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh
Q 011669          208 SNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (480)
Q Consensus       208 ~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  287 (480)
                      ........ .+ .....+.....++ +|    .++++++++.. .+++++||+||+++++|.++|+++|+++|+++|++|
T Consensus       163 ~~~~~~~~-~~-~~~~~~~~~~~~~-~d----~~~l~~~l~~~-~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~  234 (433)
T PRK00615        163 SLDTLTHL-VD-TDLAHPLTLSLPY-ND----FQIFQTVMNSL-GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRT  234 (433)
T ss_pred             CcCcCCCC-CC-CCCCCCCeEeCCC-CC----HHHHHHHHHhc-CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHc
Confidence            21110000 00 0000111111123 23    56788888654 358999999999999999999999999999999999


Q ss_pred             CCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCC---CccccCCCcHHHHHHH
Q 011669          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAG  364 (480)
Q Consensus       288 gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~---~~~~t~~~~~~~~aaa  364 (480)
                      |+++|+||||+|| |+| .+++++++++.||++||||++|||+|+|++++++++++.+...   .+++||++||++|+++
T Consensus       235 g~llI~DEv~tG~-R~G-~~ga~~~~gv~PDi~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~  312 (433)
T PRK00615        235 GSLSIMDEVVTGF-RVA-QGGAAAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAG  312 (433)
T ss_pred             CCEEEEEcccccc-ccc-HhHHHHhcCCCCCeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHH
Confidence            9999999999999 899 6888889999999999999999999999999999999988532   3668999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCc-eeeEeccceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHH
Q 011669          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKE  438 (480)
Q Consensus       365 ~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~  438 (480)
                      +++|++++++++.+++++++++++++|+++..+++. +..++ .|+|++++|..+..+     ...+......+.+.|.+
T Consensus       313 la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  391 (433)
T PRK00615        313 KASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFS  391 (433)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHH
Confidence            999999998899999999999999999998877432 66777 899999999865321     01123345678999999


Q ss_pred             cCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          439 MGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       439 ~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +||++.+......    ..+..+|++|||++++++++++++
T Consensus       392 ~Gv~~~~~~~~~~----~ls~~ht~~did~~~~a~~~~~~~  428 (433)
T PRK00615        392 KGVYLSPSPFEAS----FLSSAHSMENLDYAQNVLIDSLEK  428 (433)
T ss_pred             CCeeecCcccccc----ceecCCCHHHHHHHHHHHHHHHHH
Confidence            9999987542222    234789999999999999999875

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=1.9e-64  Score=542.19  Aligned_cols=414  Identities=20%  Similarity=0.228  Sum_probs=334.1

Q ss_pred             CHHHHHHHHhhhcCCccccc--c--CCCeEEEeeecc----EEEeCCCC----EEEeccCCcccccCC-CCCHHHHHHHH
Q 011669           59 SADEILAKRKTFLSPSLFHL--Y--SKPLNVVDGKMQ----YLFDENGR----RYLDAFGGIATVCCG-HCHPYVVDSIV  125 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~--~--~~p~~~~~g~G~----~l~d~dG~----~ylD~~~g~~~~~lG-h~~p~v~~A~~  125 (480)
                      +.+++.++.+++++....+.  +  ..|.+|.+++|.    |++|.||+    +|||+++|++++++| |+||+|++|+.
T Consensus       313 ~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~  392 (817)
T PLN02974        313 RLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVA  392 (817)
T ss_pred             HHHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHH
Confidence            44566677777876544332  1  247889999998    99999998    999999999999999 68999999999


Q ss_pred             HHHHhcccccc-ccCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHh-hc------------------CC
Q 011669          126 NQIKRIQHSTV-LYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARL-YT------------------GC  184 (480)
Q Consensus       126 ~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~-~~------------------~~  184 (480)
                      +|++++.|... .+.++...+|+|+|.+..+. .+++|||++|||||||.|||+|+. +.                  ++
T Consensus       393 ~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r  472 (817)
T PLN02974        393 YAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIE  472 (817)
T ss_pred             HHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCC
Confidence            99999988755 45789999999999996542 378999999999999999999953 52                  36


Q ss_pred             ceEEEEcCCcccccccccccccCCCccccc--c--CCCeeEec--------------CCCCcCCC-------CCC-----
Q 011669          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNV--V--QTGVHHAL--------------NPDPYRGV-------FGA-----  234 (480)
Q Consensus       185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~--~--~~g~~~~~--------------~p~~~~~~-------~~~-----  234 (480)
                      .+||.++++|||.+.+++++++.+.+...+  +  .....+++              +|..+++.       |.+     
T Consensus       473 ~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f  552 (817)
T PLN02974        473 LKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVF  552 (817)
T ss_pred             CEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccc
Confidence            789999999999999999999754433211  1  11112222              22222221       110     


Q ss_pred             ----C----hHHHHHHHHHHHHc----cCCCceEEEEEccc-CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcc
Q 011669          235 ----D----GEMYAKDVQDLIDF----GTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA  301 (480)
Q Consensus       235 ----d----~~~~~~~le~~i~~----~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg  301 (480)
                          +    ...+.+.+++.|+.    ..++++++||+||+ ||.||+++++++|+++|+++|++||++||+|||+||||
T Consensus       553 ~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfG  632 (817)
T PLN02974        553 DKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLW  632 (817)
T ss_pred             cccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCC
Confidence                0    12345677777763    23568999999995 99999999999999999999999999999999999999


Q ss_pred             ccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC------CCccccCCCcHHHHHHHHHHHHHhhhh
Q 011669          302 RTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR------RNYFNTFGGNPVCTAAGHAVLKVIQKD  374 (480)
Q Consensus       302 r~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aaa~a~L~~i~~~  374 (480)
                      |+| .+|+++++|+.|||+|++|+++|| +|+|++++++++++.+..      ..|++||++||++|++++++|++++++
T Consensus       633 RtG-~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~  711 (817)
T PLN02974        633 RLG-VESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDP  711 (817)
T ss_pred             ccc-chhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcc
Confidence            999 899999999999999999999999 699999999999998852      248899999999999999999999887


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCC-CHHHHHHHHHHHH-HcCceeeccCc
Q 011669          375 ----KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKMK-EMGVLVGKGGF  448 (480)
Q Consensus       375 ----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~-~~~~~~~~~~~l~-~~Gv~v~~~~~  448 (480)
                          ++.++.+++++++.+.|.+...+++.+.++||.|+|++++++.+... .+ .......+.+.|+ ++||++++.  
T Consensus       712 ~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~-~~~~~~~a~~v~~~~~~~~Gl~~r~~--  788 (817)
T PLN02974        712 STNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSG-SGYSSLYARSVVRRLRREDGIYARPL--  788 (817)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcc-cccchHHHHHHHHHHHHhCCEEEEec--
Confidence                45555666667777777444466899999999999999999875432 12 2234567888888 999999875  


Q ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          449 YGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       449 ~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                       +++||+.||++++++++++++++|++.|
T Consensus       789 -Gnvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        789 -GNVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             -CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence             4899999999999999999999999876

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=100.00  E-value=1.9e-64  Score=517.40  Aligned_cols=395  Identities=26%  Similarity=0.399  Sum_probs=317.3

Q ss_pred             HHHHHHhhhcCCccccccCCCeEEEeeeccEEEeC-CCCEEEeccCCcccccCCCCCHHHH--HHHHHHHHhccc---cc
Q 011669           62 EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVV--DSIVNQIKRIQH---ST  135 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~-dG~~ylD~~~g~~~~~lGh~~p~v~--~A~~~~~~~~~~---~~  135 (480)
                      .+++...+|....   -++.++.+++|+|+||||. |||+||||.+|++++++||+||+|+  +|+.+|+.++.+   ..
T Consensus         3 ~~~~~~~~~~~~~---~~p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~   79 (431)
T TIGR03251         3 RVHEVLSRHMLTD---GFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSN   79 (431)
T ss_pred             hHHHHHHHHhhcc---CCceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhccccc
Confidence            3455555554332   1222345799999999996 9999999999999999999999999  999999998743   22


Q ss_pred             cccCChHHHHHHHHHHHhC-CCCCCEEEEeCCHHHHHHHHHHHHHhhcC------------CceEEEEcCCccccccccc
Q 011669          136 VLYLNHAIADFAEALASKM-PGNLKVVFFTNSGTEANELAIMMARLYTG------------CNDIISLRNAYHGNAAGTM  202 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~-~~~~~~v~f~~sGseA~~~Alk~ar~~~~------------~~~ii~~~~~yhG~~~~~~  202 (480)
                      ..+.++...+++++|++.. +.++++|+|+||||||||.|||+||.|++            +.+||.|+++|||++.+++
T Consensus        80 ~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~al  159 (431)
T TIGR03251        80 SDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTL  159 (431)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhh
Confidence            2456888899999999986 55688999999999999999999998863            4689999999999999999


Q ss_pred             ccccCCCcccc-ccCCCeeEecCCCCcCCCCCC---C-----hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          203 GATAQSNWKFN-VVQTGVHHALNPDPYRGVFGA---D-----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       203 ~~~~~~~~~~~-~~~~g~~~~~~p~~~~~~~~~---d-----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      ++++...++.. .+..+...++.|.. +.++..   +     ...+++++++.++.. ++++++||+||+|+++|.++++
T Consensus       160 s~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~iAavivEPv~g~~G~~~~~  237 (431)
T TIGR03251       160 SLTNTDPRKTARFPKFDWPRIDNPKL-TFPLDAPNLDQVIALEEEALRQARAAFAER-PHDIACFIAEPIQGEGGDNHFR  237 (431)
T ss_pred             hccCCccccccCCCCCCCccCCCCcc-cCCccccccchhhHHHHHHHHHHHHHHHhC-CCcEEEEEEeccccCCCCcCCC
Confidence            99875433322 11112222333322 112111   1     123456677777643 5689999999999999999999


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHh----hc-CC
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV----LT-RR  348 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~----l~-~~  348 (480)
                      ++||++|+++|++||++||+||||+||||+| .+|+++++++.||++++||++    ++++++..+++.+.    +. ..
T Consensus       238 ~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG-~~~a~~~~gv~PDi~~~gK~~----~~~g~~~~~~i~~~~~~~~~~~~  312 (431)
T TIGR03251       238 PEFLRAMRALCDEHDALLIFDEVQTGVGLTG-TAWAYQQLGVQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPS  312 (431)
T ss_pred             HHHHHHHHHHHHHcCCEEEEecchhccCccc-hHHHHHhcCCCCCEEEecccC----ccceEEecchHHHhhhhcccCcc
Confidence            9999999999999999999999999999999 788999999999999999997    55556666544222    21 23


Q ss_pred             CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC-ceeeEeccceeEEEEEecCCCcCCCCHH
Q 011669          349 NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKA  427 (480)
Q Consensus       349 ~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~  427 (480)
                      .+.+||++||+++++++++|++++++++.+++++++++++++|+++.++++ .+.+++|.|+|+++++..        ..
T Consensus       313 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~--------~~  384 (431)
T TIGR03251       313 RLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPS--------TA  384 (431)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCC--------HH
Confidence            477999999999999999999999889999999999999999999988888 889999999999999932        22


Q ss_pred             HHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          428 ETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       428 ~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ....+.+.|+++||++.+.+  .+.+||+||+++|++|||+++++|+++
T Consensus       385 ~~~~~~~~l~~~Gvl~~~~g--~~~lr~~P~l~~t~~eid~~l~~l~~~  431 (431)
T TIGR03251       385 DRDEVIRQLYREGVLLLGCG--ERSIRFRPPLTVTREEIDAAIDAIRRV  431 (431)
T ss_pred             HHHHHHHHHHhCCeEEecCC--CCeEEEECCccCCHHHHHHHHHHHHhC
Confidence            35678889999999998754  478999999999999999999999863

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=6.2e-64  Score=512.54  Aligned_cols=405  Identities=27%  Similarity=0.392  Sum_probs=334.5

Q ss_pred             CCHHHHHHHHhhhcCCccccc-cC-CCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc
Q 011669           58 PSADEILAKRKTFLSPSLFHL-YS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST  135 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~-~~-~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~  135 (480)
                      |+.+++++...+++++..... .. .++.+++++|.|+||.|||+||||++|++++++||+||+|++|+.+|++++.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~   81 (427)
T TIGR00508         2 PDTASLLAFDQRHIWHPYTSMSSPLPVYPVESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVM   81 (427)
T ss_pred             CChHHHHhccccccccCccCccccCCCceEEeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcc
Confidence            344556665545543321111 12 2467899999999999999999999999999999999999999999999876543


Q ss_pred             c-ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCC
Q 011669          136 V-LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQS  208 (480)
Q Consensus       136 ~-~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~  208 (480)
                      . .+.++...+++++|++..|.++++|+|++||+||++.|+|+||.++      ++.+||+|+++|||.+.+++++++..
T Consensus        82 ~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~  161 (427)
T TIGR00508        82 FGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPE  161 (427)
T ss_pred             ccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCc
Confidence            3 3568889999999999998878999999999999999999999884      57899999999999999999987742


Q ss_pred             C-cccccc--CCCeeEecCCCC-cCCCCCCChHHHHHHHHHHHHccCCCceEEEEEccc-CCCCcceeCCCChHHHHHHH
Q 011669          209 N-WKFNVV--QTGVHHALNPDP-YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKS  283 (480)
Q Consensus       209 ~-~~~~~~--~~g~~~~~~p~~-~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l  283 (480)
                      . ++....  .+++..++.|.. +.++|+   ..++++++++++.. .+++++||+||+ |++||.++++++||++|+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~l~~~l~~~-~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~l  237 (427)
T TIGR00508       162 NSMHSLYKGYLPEQIFAPAPQNRFDEEWN---EEAITPLAKLMELH-SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQAL  237 (427)
T ss_pred             ccccccccccCCCCeEcCCCCccccchhH---HHHHHHHHHHHHhc-CCcEEEEEEechhcCcCCcccCCHHHHHHHHHH
Confidence            2 221111  134445544432 122221   12356777777643 457999999997 99999999999999999999


Q ss_pred             HHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-----CccccCCCc
Q 011669          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFNTFGGN  357 (480)
Q Consensus       284 ~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-----~~~~t~~~~  357 (480)
                      |++||+++|+||||+||||+| .+|+++++++.||++++||+++|| +|++++++++++++.+...     .+..||++|
T Consensus       238 c~~~~~llI~DEv~tG~Gr~G-~~~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~  316 (427)
T TIGR00508       238 CKQYDILLIADEIATGFGRTG-KLFACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGN  316 (427)
T ss_pred             HHHcCCEEEEeccccCCCcCC-ccchhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcC
Confidence            999999999999999999999 788899999999999999999999 4999999999999988642     267899999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH
Q 011669          358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK  437 (480)
Q Consensus       358 ~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  437 (480)
                      |+++++++++|++++++++.+++++++++++++|+++. .++.+..++|.|+++++++..+.        ....+.+.|+
T Consensus       317 p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~-~~~~i~~vrg~G~~~~i~~~~~~--------~~~~~~~~l~  387 (427)
T TIGR00508       317 PLACAVAEASLAILLEGEWQKQVSAIENQLKRELSPLR-KNPVVKDVRVLGAIGVVEMYKPV--------NVEELQKKFV  387 (427)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh-cCCCEEeEeccccEEEEEECCcc--------CHHHHHHHHH
Confidence            99999999999999988999999999999999999985 46667899999999999995321        1356888999


Q ss_pred             HcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          438 EMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       438 ~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++||++.+.+   +.+|++||+++|++|||+++++|++++++
T Consensus       388 ~~Gv~~~~~~---~~l~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       388 EQGVWIRPFG---KLIYVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             HCCeEEEecC---CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999997653   68999999999999999999999999875

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=100.00  E-value=6.7e-64  Score=510.66  Aligned_cols=382  Identities=28%  Similarity=0.491  Sum_probs=328.9

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 011669           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~  138 (480)
                      ++++++++..++..+.   +.+.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+....+
T Consensus         3 ~~~~~~~~~~~~~~~~---~~~~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~   79 (396)
T PRK04073          3 KSEKIIELTNHYGAHN---YHPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAF   79 (396)
T ss_pred             hHHHHHHHHHHhcccc---cCCCCceEEeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhcccccccc
Confidence            5667888777775443   3456899999999999999999999999999999999999999999999999987665556


Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh--------cCCceEEEEcCCcccccccccccccCCCc
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  210 (480)
                      .++...+|+++|++..+  .++++|++||+|||+.|||+||.+        +++++||+++++|||++.+++++++.+.+
T Consensus        80 ~~~~~~~l~~~l~~~~~--~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~  157 (396)
T PRK04073         80 HSDQLGPWYEKVAKLTG--KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEY  157 (396)
T ss_pred             CCHHHHHHHHHHHhcCC--CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCccc
Confidence            78888999999999875  468999999999999999999987        57789999999999999999998876544


Q ss_pred             cccccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669          211 KFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (480)
Q Consensus       211 ~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  288 (480)
                      +.....  +++..++++         |    .+++++.++    +++++||+||++|++|.+.++++|+++|+++|++||
T Consensus       158 ~~~~~~~~~~~~~~~~~---------d----~~~l~~~i~----~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g  220 (396)
T PRK04073        158 KRGFGPMLPGIKKIPYG---------D----LEALKAAIT----PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEEN  220 (396)
T ss_pred             ccCCCCCCCCceEeCCC---------C----HHHHHHhcc----cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence            332211  344444332         2    467777764    368999999999999999888899999999999999


Q ss_pred             CEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHH
Q 011669          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~  367 (480)
                      +++|+||+|+||||+| .+++++..++.||+++|||++|+| +|+||+++++++++.+....+..||++||+++++++++
T Consensus       221 ~lli~DEv~~g~g~~g-~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aa  299 (396)
T PRK04073        221 VLFIADEIQTGLGRTG-KLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAA  299 (396)
T ss_pred             CEEEEecchhCCCcCc-HHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999 677777889999999999999975 99999999999999887767789999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG  447 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  447 (480)
                      |+.++++++.++.+++++++++.|+++  .++.+..+++.|+|+++++..          ....+.+.|+++||++.+.+
T Consensus       300 L~~~~~~~l~~~~~~~~~~l~~~L~~l--~~~~i~~~~~~g~~~~~~~~~----------~~~~~~~~l~~~Gv~~~~~~  367 (396)
T PRK04073        300 LEVLEEEKLPERSLELGEYFKEQLKEI--DNPMIKEVRGRGLFIGVELNE----------PARPYCEALKEEGLLCKETH  367 (396)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHhh--cCCcccceecceEEEEEEecc----------hHHHHHHHHHHCCeEEecCC
Confidence            999888889999999999999999987  345677889999999998842          14568888999999998653


Q ss_pred             cCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          448 FYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       448 ~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                        +++|||+||+++|++++++++++|++++
T Consensus       368 --~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        368 --ETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             --CCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence              4799999999999999999999999876

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=100.00  E-value=3.6e-63  Score=508.85  Aligned_cols=414  Identities=29%  Similarity=0.488  Sum_probs=352.7

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccC
Q 011669           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYL  139 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~  139 (480)
                      +++.++.+++..++...  ..|+++++++|+||||+||++||||.+|++++++||+||+|.+++.+|++++.|... .+.
T Consensus         5 ~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~   82 (425)
T PRK08088          5 KSLMQRRSAAVPRGVGQ--IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA   82 (425)
T ss_pred             HHHHHHHHHhhccccCC--CCCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccC
Confidence            45666665665444322  348999999999999999999999999999999999999999999999998766443 244


Q ss_pred             ChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Cccccc--c
Q 011669          140 NHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNV--V  215 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~--~  215 (480)
                      ++...+++++|++..|.+. ++++|++||+||+|.|||+||.++++.+||.++++|||++.+++++++.. .+....  .
T Consensus        83 ~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~  162 (425)
T PRK08088         83 YEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLM  162 (425)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCC
Confidence            7788899999999887554 58999999999999999999999999999999999999999999987642 233222  1


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc-cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ..++..+++|..+++   .+.+.++++++++++. ..++++++||+||+++++|.+.++++|+++|+++|++||+++|+|
T Consensus       163 ~~~~~~~~~p~~~~~---~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~D  239 (425)
T PRK08088        163 PGHVYRALYPCPLHG---VSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIAD  239 (425)
T ss_pred             CCCcEEcCCCccccC---ccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            245566666654432   1223346678888863 224689999999999999999999999999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD  374 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~  374 (480)
                      |+|+||||+| .+++++..++.||+++|||++++|+|+||+++++++++.+....+..|+++||+.++++.++|+.+..+
T Consensus       240 ev~~g~g~~g-~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~  318 (425)
T PRK08088        240 EVQTGAGRTG-TLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQE  318 (425)
T ss_pred             ccccCCCcCc-chhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence            9999999999 677777889999999999999999999999999999999987778899999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEE
Q 011669          375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFR  454 (480)
Q Consensus       375 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR  454 (480)
                      ++.+++++.++++++.|.++..+++.+..++|.|+|+|+++..+..++.|.......+.+.|.++||++.+++.+.+.+|
T Consensus       319 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iR  398 (425)
T PRK08088        319 NLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLR  398 (425)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEE
Confidence            99999999999999999999888888889999999999999765544445556678899999999999988766678999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          455 ITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       455 i~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      |+||+.+|+++|++++++|++++.++
T Consensus       399 l~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        399 ILVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             EECCCCcCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998753

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=100.00  E-value=2.4e-65  Score=508.32  Aligned_cols=329  Identities=37%  Similarity=0.638  Sum_probs=289.3

Q ss_pred             EEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-cccCChHHHHHHHHHHHhCCCCCCEEE
Q 011669           84 NVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VLYLNHAIADFAEALASKMPGNLKVVF  162 (480)
Q Consensus        84 ~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~l~e~L~~~~~~~~~~v~  162 (480)
                      +|++++|+||||.|||+||||++|++++++||+||+|.+|+++|+.++.+.. ..+.++...+|+++|.+.+|..+++|+
T Consensus         1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~   80 (339)
T PF00202_consen    1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVF   80 (339)
T ss_dssp             EEEEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEE
T ss_pred             CeEEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceee
Confidence            5899999999999999999999999999999999999999999999987755 456789999999999999988889999


Q ss_pred             EeCCHHHHHHHHHHHHH------hhcCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCCCCCC
Q 011669          163 FTNSGTEANELAIMMAR------LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGA  234 (480)
Q Consensus       163 f~~sGseA~~~Alk~ar------~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~  234 (480)
                      |++||+||||.|||+||      ..+++.+|+.|+++|||++.+++++++.+.++.....  .++..+|+|+..+   ..
T Consensus        81 f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~  157 (339)
T PF00202_consen   81 FANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAA---DE  157 (339)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHH---HH
T ss_pred             eccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccch---hh
Confidence            99999999999999999      7789999999999999999999999877655544333  5667787776432   00


Q ss_pred             ChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC
Q 011669          235 DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG  314 (480)
Q Consensus       235 d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~  314 (480)
                      .......++++.+.....+++++||+||+|+++|.+.++++|+++|+++|+|||+++|+|||||||||+| ++|++++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG-~~~a~~~~g  236 (339)
T PF00202_consen  158 EEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTG-KFFASEHYG  236 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTS-SSSGHHHHT
T ss_pred             hHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccC-Cccceeccc
Confidence            0112234455555433356899999999999999999999999999999999999999999999999999 899999999


Q ss_pred             CCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 011669          315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       315 ~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l  394 (480)
                      +.||++|+||+++||+|+|++++++++++.+....+.+||++||++|++++++|+.++++++.+++++.+++++++|+++
T Consensus       237 v~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l  316 (339)
T PF00202_consen  237 VDPDIVTFGKGLGGGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLREL  316 (339)
T ss_dssp             SSSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcccccccchhhhhhcccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998878999999999999999999999999999999999999999999999


Q ss_pred             HHhcCceeeEeccceeEEEEEe
Q 011669          395 KDKYGIIGDVRGRGFLLGVEFV  416 (480)
Q Consensus       395 ~~~~~~~~~v~g~g~~~~i~~~  416 (480)
                      .++++.+..++|.|+|++++++
T Consensus       317 ~~~~~~i~~vrg~Gl~~~ie~~  338 (339)
T PF00202_consen  317 AARYPLIGEVRGIGLMIGIELV  338 (339)
T ss_dssp             HHHTTTEEEEEEETTEEEEEES
T ss_pred             HHhCCCeEEEeeeCeEEEEEEE
Confidence            9999999999999999999985

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=5.3e-63  Score=503.42  Aligned_cols=369  Identities=36%  Similarity=0.564  Sum_probs=324.5

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      +.|+.+++|+|+|+||.|||+||||.+|++++++||+||+|++|+.+|++++.+....+.++...+++++|++..+  .+
T Consensus        12 ~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~   89 (389)
T PRK01278         12 RADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENSF--AD   89 (389)
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhCC--CC
Confidence            4589999999999999999999999999999999999999999999999987665555678899999999999874  46


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCcccccc--CCCeeEecCCCCcCCC
Q 011669          160 VVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGV  231 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~g~~~~~~p~~~~~~  231 (480)
                      +|+|++||+|||+.|+|++|.+      +++++||+++++|||++.+++.+++.+.+.....  ..++..++++      
T Consensus        90 ~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  163 (389)
T PRK01278         90 KVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFG------  163 (389)
T ss_pred             EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCC------
Confidence            8999999999999999999987      5677999999999999999998887654432221  1233333322      


Q ss_pred             CCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc
Q 011669          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (480)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~  311 (480)
                         |    .++++++++    +++++|++||+||++|.+.++++++++|+++|++||+++|+||||+||||+| .+++++
T Consensus       164 ---d----~~~l~~~l~----~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g-~~~~~~  231 (389)
T PRK01278        164 ---D----IEALKAAIT----PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTG-KLFAHE  231 (389)
T ss_pred             ---C----HHHHHHhhC----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC-cceeec
Confidence               2    567887774    3799999999999999888999999999999999999999999999999999 677777


Q ss_pred             ccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011669          312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (480)
Q Consensus       312 ~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L  391 (480)
                      .+++.||++||||++++|+|+||+++++++++.+....+..||++||+++++++++|+.++++++.+++++++++++++|
T Consensus       232 ~~~~~pdi~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l  311 (389)
T PRK01278        232 WAGVTPDIMAVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKL  311 (389)
T ss_pred             ccCCCCCEEEEehhccCCcceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999888777889999999999999999999988888999999999999999


Q ss_pred             HHhHHhcC-ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHH
Q 011669          392 TALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       392 ~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l  470 (480)
                      +++.++++ .+..+++.|+++++++..+          ...+++.|+++||++.|++  .+++||+||++++++++++++
T Consensus       312 ~~l~~~~~~~~~~v~g~G~~~~i~~~~~----------~~~~~~~l~~~GV~~~p~~--~~~lR~~p~~~~~~~~i~~~l  379 (389)
T PRK01278        312 EGLVDRFPDVIEEVRGKGLLLGLKCVVP----------NRDLVQALRDEGLLTVGAG--DNVVRLLPPLIITEEEIDEAL  379 (389)
T ss_pred             HHHHhhCCCceeeEecccEEEEEEEecC----------HHHHHHHHHHCCeEEeecC--CCEEEEeCCcccCHHHHHHHH
Confidence            99877776 7888999999999988431          4678889999999999875  578999999999999999999


Q ss_pred             HHHHHHHhhC
Q 011669          471 DVMDYSLSKM  480 (480)
Q Consensus       471 ~~l~~~l~~~  480 (480)
                      ++|+++++++
T Consensus       380 ~~l~~~l~~~  389 (389)
T PRK01278        380 ERLERAAESL  389 (389)
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=100.00  E-value=1.1e-62  Score=506.13  Aligned_cols=407  Identities=25%  Similarity=0.389  Sum_probs=333.7

Q ss_pred             CHHHHHHHHhhhcCCcccc---cc----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhc
Q 011669           59 SADEILAKRKTFLSPSLFH---LY----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI  131 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~---~~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~  131 (480)
                      ++.+++++.+++++.+...   ++    +.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++
T Consensus         1 ~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~   80 (423)
T TIGR00713         1 KSENLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERG   80 (423)
T ss_pred             CcHHHHHHHHhhCCCCCCCcccccccCCCCCeeEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhC
Confidence            3567888888888655421   12    4589999999999999999999999999999999999999999999999986


Q ss_pred             cccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcc
Q 011669          132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (480)
Q Consensus       132 ~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  211 (480)
                      .+  ..++++...+|+++|++.++.. ++|+|++||+||++.|+|+||.++++++||+++++|||++...+..++.....
T Consensus        81 ~~--~~~~~~~~~~lae~l~~~~~~~-~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~  157 (423)
T TIGR00713        81 TS--YGAPTEAEILLAKEIISRVPSV-EMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAAT  157 (423)
T ss_pred             Cc--CCCCCHHHHHHHHHHHHhCCcc-cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccc
Confidence            43  2356788999999999999753 78999999999999999999999999999999999999988777765432111


Q ss_pred             ccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669          212 FNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (480)
Q Consensus       212 ~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  290 (480)
                      ...+. +++.....++.++.+++ |    .++++++++.. ++++++||+||+++++|.+.++++|+++|+++|++||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~-d----~~~l~~~i~~~-~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~l  231 (423)
T TIGR00713       158 LGLPTSPGVPEDFAKLTLVLPYN-D----LEALEEVFEEY-GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSL  231 (423)
T ss_pred             cCCCCCCCCCcccccceEEeCCC-C----HHHHHHHHHHc-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCE
Confidence            11111 11111111222233332 3    57788888643 358999999999999998888889999999999999999


Q ss_pred             EEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---CCccccCCCcHHHHHHHHHH
Q 011669          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       291 lI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa~a~  367 (480)
                      +|+||||+|| |+| ..++++++++.||++||||++++|+|+||+++++++++.+..   ..+++||++||++|++++++
T Consensus       232 lI~DEv~~g~-r~g-~~~~~~~~~~~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~  309 (423)
T TIGR00713       232 LIFDEVMTGF-RVA-LGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLAT  309 (423)
T ss_pred             EEEEcccccc-ccC-cchhHHHhCCCcchhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHH
Confidence            9999999999 888 566677889999999999999999999999999999998864   23678999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHcCce
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEMGVL  442 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~  442 (480)
                      |+.++++++.++++++++++++.|.++.++++.+..+++.|+|+++++..+...     ..++......+.+.|+++||+
T Consensus       310 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~  389 (423)
T TIGR00713       310 LKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVF  389 (423)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeE
Confidence            999988889999999999999999999888988889999999999998653211     112233455788899999999


Q ss_pred             eeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          443 VGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       443 v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      +.+++  .+.+||+|+  +|+++|++++++|+++++++
T Consensus       390 v~~~~--~~~~~l~~~--~t~~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       390 LPPSQ--FEACFLSAA--HTEEDIENTIEAAEEVFAEL  423 (423)
T ss_pred             EecCC--ccceeeECC--CCHHHHHHHHHHHHHHHhhC
Confidence            87653  246899976  79999999999999999764

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=1.7e-61  Score=495.98  Aligned_cols=408  Identities=25%  Similarity=0.391  Sum_probs=335.0

Q ss_pred             CCHHHHHHHHhhhcCCcccc-------ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHh
Q 011669           58 PSADEILAKRKTFLSPSLFH-------LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~  130 (480)
                      +++++++++.++++..+...       +...|+.+++++|+|+||.|||+||||.+|+++.++||+||+|++|+.+|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~   81 (426)
T PRK00062          2 SKSEELFERAKKLIPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK   81 (426)
T ss_pred             chhHHHHHHHHHhCCCCcCCcccccCCCCCCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh
Confidence            57889999998887644311       12347899999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCc
Q 011669          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (480)
Q Consensus       131 ~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  210 (480)
                      ..  ...+.++...+|+++|++.++. .++|+|++||+|||+.|+|+++.++++++||+++++|||++.++...++....
T Consensus        82 ~~--~~~~~~~~~~~la~~L~~~~~~-~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~  158 (426)
T PRK00062         82 GL--SFGAPTELEVELAELVIELVPS-IEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAA  158 (426)
T ss_pred             CC--cCCCCCHHHHHHHHHHHHhCCC-CCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCcccc
Confidence            53  2345688889999999999874 67899999999999999999999999999999999999999887776543221


Q ss_pred             cccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669          211 KFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       211 ~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                      ....+. .++.....+..++.+++ |    .+++++.++.. .+++++||+||+++++|.+.++++||++|+++|++||+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~-d----~~~l~~~i~~~-~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~  232 (426)
T PRK00062        159 TLGLPDSPGVPEDFAKHTLTAPYN-D----LEAVEELFEEY-GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGA  232 (426)
T ss_pred             ccCCCCCCCCCcccccceEEcCCC-C----HHHHHHHHHhC-CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence            111111 11111001112222332 3    56788777643 45899999999999999999899999999999999999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---CCccccCCCcHHHHHHHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAGHA  366 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa~a  366 (480)
                      ++|+||||+|| |+| .++..+++++.||+++|||++++|+|+|++++++++++.+..   ..+++|+++||++++++++
T Consensus       233 llI~DEv~~G~-r~g-~~~~~~~~~~~pDi~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a  310 (426)
T PRK00062        233 LLIFDEVMTGF-RVA-LGGAQGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLA  310 (426)
T ss_pred             EEEEeechhcc-ccC-CccHHHHhCCCcchHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHH
Confidence            99999999999 888 577777889999999999999999999999999999998853   2356899999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHcCc
Q 011669          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEMGV  441 (480)
Q Consensus       367 ~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv  441 (480)
                      +|+.++++++.+++++++++++++|+++.++++.+.++++.|+|+++++..+...     +.++......+.+.|+++||
T Consensus       311 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv  390 (426)
T PRK00062        311 TLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGV  390 (426)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCe
Confidence            9999988889999999999999999999888998899999999999999754211     12333445778999999999


Q ss_pred             eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ++.+.+  .+.++++  +++|++||++++++|+++++++
T Consensus       391 ~v~~~~--~~~~~~~--~~~t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        391 YLAPSQ--FEAGFVS--AAHTDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             EeecCC--cCceeee--ccCCHHHHHHHHHHHHHHHHhh
Confidence            998754  2456664  8999999999999999998753

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=100.00  E-value=1.3e-60  Score=487.57  Aligned_cols=372  Identities=31%  Similarity=0.542  Sum_probs=320.9

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      +.|+++.+++|+|+||.||++||||++|+++.+|||+||+|.+|+.+++++..+....+.++...+++++|++..+  .+
T Consensus        21 ~~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~   98 (403)
T PRK05093         21 PAEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATF--AE   98 (403)
T ss_pred             CCCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCC--CC
Confidence            5589999999999999999999999999999999999999999999999986554444567788899999999874  46


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCCC
Q 011669          160 VVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGV  231 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~  231 (480)
                      +++|++||+|||+.|+|++|.++      ++.+||+++++|||++.+++++++.+.+......  .++.++++       
T Consensus        99 ~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  171 (403)
T PRK05093         99 RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------  171 (403)
T ss_pred             EEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------
Confidence            89999999999999999999885      6789999999999999998888765433322211  23333332       


Q ss_pred             CCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc
Q 011669          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (480)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~  311 (480)
                        +|    .+++++.+.    +++++|++||+|+++|.+.++++|+++|+++|++||+++|+||||+|||++| .+++++
T Consensus       172 --~d----~~~l~~~l~----~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g-~~~~~~  240 (403)
T PRK05093        172 --ND----LAAVKAVID----DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG-DLFAYM  240 (403)
T ss_pred             --CC----HHHHHHHhc----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc-cchhhh
Confidence              23    567777774    3799999999999999998899999999999999999999999999999999 666677


Q ss_pred             ccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011669          312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (480)
Q Consensus       312 ~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L  391 (480)
                      .+++.||+++|||++++|+|+||+++++++++.+....+..|++++|+.+++++++|+.+.++++.++++++++++++.|
T Consensus       241 ~~~~~pdi~s~sK~l~~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L  320 (403)
T PRK05093        241 HYGVTPDILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL  320 (403)
T ss_pred             hcCCCCCEEEecccccCCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999988767778999999999999999999887888999999999999999


Q ss_pred             HHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHH
Q 011669          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       392 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~  471 (480)
                      +++..+++.+..+++.|+++|+++....      ......+++.|+++||++.+++  .+++||+|++++++++|+++++
T Consensus       321 ~~~~~~~~~~~~~~~~G~~~~~~l~~~~------~~~~~~~~~~l~~~Gv~v~~~g--~~~lRl~~~~~~~~~~i~~~~~  392 (403)
T PRK05093        321 QKINQKYGVFSEIRGMGLLIGAELKPQY------KGRARDFLNAAAEEGVMVLVAG--PDVLRFAPSLVIEEADIDEGLA  392 (403)
T ss_pred             HHHHhhCCCeEeEeeCceEEEEEecCcc------hhHHHHHHHHHHHCCeEEecCC--CCEEEEeCCCCCCHHHHHHHHH
Confidence            9987667777889999999999985320      1235678899999999998754  4789999999999999999999


Q ss_pred             HHHHHHhh
Q 011669          472 VMDYSLSK  479 (480)
Q Consensus       472 ~l~~~l~~  479 (480)
                      +|++++.+
T Consensus       393 ~l~~~l~~  400 (403)
T PRK05093        393 RFEKAVAK  400 (403)
T ss_pred             HHHHHHHH
Confidence            99998865

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=8.1e-60  Score=481.59  Aligned_cols=384  Identities=34%  Similarity=0.564  Sum_probs=327.0

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC
Q 011669           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN  140 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~  140 (480)
                      .+.++...+++.+.   +...|+++.+++|.|+||.|||+||||.+|+++++|||+||+|.+|+.+++++..+....|.+
T Consensus         8 ~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~   84 (398)
T PRK03244          8 AELLQRWQAVMMNN---YGTPPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFAT   84 (398)
T ss_pred             HHHHHHHHHHhhhh---ccCCCceEEEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCC
Confidence            34555545555443   224579999999999999999999999999999999999999999999999987665556778


Q ss_pred             hHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC--C
Q 011669          141 HAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--T  217 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~  217 (480)
                      +...+|+++|++.++.. .++++|++||+||++.|+++++. +++++||.++++|||++..++.+++...+......  .
T Consensus        85 ~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  163 (398)
T PRK03244         85 EPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPG  163 (398)
T ss_pred             HHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCC
Confidence            88899999999998743 47899999999999999999987 57889999999999999999888764433222211  2


Q ss_pred             CeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc
Q 011669          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ  297 (480)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~  297 (480)
                      ++..++++         |    .+++++++.    +++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|
T Consensus       164 ~~~~~~~~---------d----~~~l~~~~~----~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~  226 (398)
T PRK03244        164 GVEHVPYG---------D----VDALAAAVD----DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQ  226 (398)
T ss_pred             CceEeCCC---------C----HHHHHHhhc----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence            23333221         2    567777763    479999999999999999999999999999999999999999999


Q ss_pred             cCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHH
Q 011669          298 AGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ  377 (480)
Q Consensus       298 tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~  377 (480)
                      +||||+| .+++++.+++.||++||||++++|+|+||+++++++++.+....+..||++||+++++++++|+.++++++.
T Consensus       227 ~g~gr~g-~~~~~~~~~~~pDi~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~  305 (398)
T PRK03244        227 TGIGRTG-AWFAHQHDGVTPDVVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLL  305 (398)
T ss_pred             cCCcccc-hHHhhhhhCCCCCEEEEchhhhCCcccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence            9999999 677778889999999999999999999999999999998877668899999999999999999998888899


Q ss_pred             HHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeC
Q 011669          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITP  457 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p  457 (480)
                      ++++++++++++.|+++  .++.+..+++.|+++++++..+         ....+.+.|+++||++.+.+  .+++||+|
T Consensus       306 ~~~~~~~~~l~~~L~~~--~~~~~~~v~g~g~~~~i~~~~~---------~~~~~~~~l~~~Gv~~~~~~--~~~iR~~p  372 (398)
T PRK03244        306 ENAERLGEQLRAGIEAL--GHPLVDHVRGRGLLLGIVLTAP---------VAKAVEAAAREAGFLVNAVA--PDVIRLAP  372 (398)
T ss_pred             HHHHHHHHHHHHHHHhc--CCCceeeEeeccEEEEEEEecc---------HHHHHHHHHHHCCeEEeecC--CCEEEEEC
Confidence            99999999999999887  4677788999999999998421         24678899999999998754  48899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Q 011669          458 PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++.+|++||++++++|++++++
T Consensus       373 ~~~~t~~~i~~~~~~l~~~l~~  394 (398)
T PRK03244        373 PLIITDAQVDAFVAALPAILDA  394 (398)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999875

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1.2e-59  Score=477.07  Aligned_cols=366  Identities=37%  Similarity=0.624  Sum_probs=317.1

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      +.|+.+++++|.|+||+|||+||||.+|+++.+|||+||+|++|+.+++++..+.+..+.++...+++++|.+..+  .+
T Consensus        10 ~~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~   87 (377)
T PRK02936         10 RFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSA--GD   87 (377)
T ss_pred             CCCceEEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCC--CC
Confidence            4578999999999999999999999999999999999999999999999987555555667888999999998875  36


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCCCCCCChH
Q 011669          160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGADGE  237 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~  237 (480)
                      .++|++||+|||+.|+++++.++++++||+++++|||++...+.+++...++.....  .++..++.+         |  
T Consensus        88 ~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------d--  156 (377)
T PRK02936         88 LVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFN---------D--  156 (377)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCC---------C--
Confidence            899999999999999999999999999999999999999999988765433222211  222333221         3  


Q ss_pred             HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCc
Q 011669          238 MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP  317 (480)
Q Consensus       238 ~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~p  317 (480)
                        .+++++.+.    +++++|++||+++++|.++++++|+++|+++|++||+++|+||||+|||++| .+++++.+++.|
T Consensus       157 --~~~l~~~~~----~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g-~~~~~~~~~~~~  229 (377)
T PRK02936        157 --IKALKEVMN----EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG-TLFAYEQFGLDP  229 (377)
T ss_pred             --HHHHHHhcc----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc-hhhHHHhhCCCC
Confidence              467777774    3689999999999999998899999999999999999999999999999999 676777788999


Q ss_pred             ceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHh
Q 011669          318 DIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK  397 (480)
Q Consensus       318 Divt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~  397 (480)
                      |++||||++++|+|+||+++++++++.+....+..|+++||++++++.++|+.+..+++.++++++++++++.|+++..+
T Consensus       230 di~t~sK~l~~G~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  309 (377)
T PRK02936        230 DIVTVAKGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEH  309 (377)
T ss_pred             cEEEEcccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999988777788999999999999999999877788999999999999999997667


Q ss_pred             cCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          398 YGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       398 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      ++.+..+++.|+++++++..+          ...+.+.|+++||++.+++  .+++||+||+.++++++++++++|++++
T Consensus       310 ~~~~~~v~~~g~~~~i~~~~~----------~~~~~~~l~~~gv~v~~~g--~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        310 LECVKNIRGKGLMIGIECTEE----------VAPVIEQLREEGLLVLSAG--PNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             CCcEEeEeecceEEEEEecch----------HHHHHHHHHHCCeEEecCC--CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            788888899999999998431          4568888999999998865  4789999999999999999999998764

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=100.00  E-value=6.7e-59  Score=474.85  Aligned_cols=389  Identities=28%  Similarity=0.485  Sum_probs=327.3

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC
Q 011669           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN  140 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~  140 (480)
                      ++++++..+|....   +.+.|+.+.+++|+|+||.||++||||.+|+++.++||+||+|++|+.++++++.+....+.+
T Consensus         2 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~   78 (401)
T TIGR01885         2 EEAIERENKYGAHN---YHPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYN   78 (401)
T ss_pred             hhHHHHHHHhhhcc---cCCCCceEEeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCC
Confidence            35666666664332   335578899999999999999999999999999999999999999999999987665555568


Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh--------cCCceEEEEcCCcccccccccccccCCCccc
Q 011669          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +...+++++|++.++  .++++|++||+|||+.||+++|.+        +++..|++++++|||++.+++++++.+.++.
T Consensus        79 ~~~~~l~~~l~~~~~--~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~  156 (401)
T TIGR01885        79 DVFGEFAEYVTKLFG--YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRT  156 (401)
T ss_pred             HHHHHHHHHHHhhcC--CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccc
Confidence            889999999999985  478999999999999999999886        3578899999999999999999876543332


Q ss_pred             cccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669          213 NVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (480)
Q Consensus       213 ~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  290 (480)
                      .+..  .++..++.+         |    .++++++++.. ++++++|++||+++++|.+.++++||++|+++|++||++
T Consensus       157 ~~~~~~~~~~~~~~~---------d----~~~le~~l~~~-~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~l  222 (401)
T TIGR01885       157 NFGPYVPGFKKIPYN---------N----LEALEEALEDH-GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVL  222 (401)
T ss_pred             ccCCCCCCceEeCCC---------C----HHHHHHHHHhc-CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence            2211  233333322         3    57788888653 357999999999999999998889999999999999999


Q ss_pred             EEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       291 lI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      +|+||||+||||+| .+++++..++.||++++||++++| +|+|++++++++++.+....+..||++||++++++.++|+
T Consensus       223 li~DEv~~g~g~~G-~~~~~~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~  301 (401)
T TIGR01885       223 LIADEIQTGLGRTG-KLLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALE  301 (401)
T ss_pred             EEEechhhCCCccc-hhhHHhhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999 677777788999999999999976 8999999999999988765677899999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY  449 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~  449 (480)
                      .++++++.++++++++++++.|+++  .++.+..+++.|+|+.+++..+..     ......+.+.|.++||++.+.+  
T Consensus       302 ~i~~~~l~~~~~~~~~~~~~~L~~l--~~~~~~~~~g~g~~~~i~~~~~~~-----~~~~~~l~~~l~~~Gv~v~~~~--  372 (401)
T TIGR01885       302 VLEEEKLAENAEKLGEIFRDQLKKL--PKPIITEVRGRGLLNAIVIDESKT-----GRTAWDLCLKLKEKGLLAKPTH--  372 (401)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHhc--cCCceeEEeecCeeEEEEeccCcc-----hhHHHHHHHHHHhCCEEEEecC--
Confidence            9988788899999999999999988  346677889999999998843210     1245778899999999998765  


Q ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          450 GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       450 ~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+.+||+||+.+|+++|++++++|++++.
T Consensus       373 ~~~lRi~p~l~~t~~~i~~~l~~l~~~l~  401 (401)
T TIGR01885       373 GNIIRLAPPLVITEEQLDEGLEIIKKVID  401 (401)
T ss_pred             CCEEEEeCCccCCHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999998763

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=100.00  E-value=8.5e-58  Score=467.14  Aligned_cols=385  Identities=29%  Similarity=0.492  Sum_probs=324.0

Q ss_pred             HHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC
Q 011669           60 ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL  139 (480)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~  139 (480)
                      ++++++....+....   +++.|+.+.+++|+|+||+||++||||++|++++++||+||+|.+|+.+|++++.+....+.
T Consensus         5 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~   81 (401)
T PRK00854          5 SEDLIATEQRLGAHN---YKPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFR   81 (401)
T ss_pred             CHHHHHHHhhhhhcc---cCCCCceEEeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccC
Confidence            456776555443222   34568899999999999999999999999999999999999999999999999877655566


Q ss_pred             ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh--------cCCceEEEEcCCcccccccccccccCCCcc
Q 011669          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  211 (480)
                      ++...+|+++|++..+.  ++++|++||+|||+.||+++|.+        +++++||++.++|||++..+++++..+.++
T Consensus        82 ~~~~~~l~~~l~~~~~~--~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~  159 (401)
T PRK00854         82 NDQLAPLYEELAALTGS--HKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDAR  159 (401)
T ss_pred             CHHHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccc
Confidence            88899999999999864  68999999999999999999876        356799999999999999888777654433


Q ss_pred             cccc--CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669          212 FNVV--QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       212 ~~~~--~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                      ....  ..++..++.+         |    .+++++.+.    +++++|++||++|++|.+.++++||++|+++|++||+
T Consensus       160 ~~~~~~~~~~~~~~~~---------d----~~~le~~i~----~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi  222 (401)
T PRK00854        160 GGFGPFTPGFRVVPFG---------D----AEALEAAIT----PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNV  222 (401)
T ss_pred             ccCCCCCCCeEEeCCC---------C----HHHHHHHhC----CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence            2222  1345444432         2    567887774    3789999999999999999889999999999999999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L  368 (480)
                      ++|+||+|+|||++| .+++.+..++.||++++||++++| +|+|++++++++++.+....+..||++||+++++++++|
T Consensus       223 ~lI~DEv~~g~g~~g-~~~~~~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L  301 (401)
T PRK00854        223 TLILDEIQTGLGRTG-KLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAAL  301 (401)
T ss_pred             EEEEechhhCCCCCc-hHhHHhhcCCCCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHH
Confidence            999999999999999 566667788999999999999988 699999999999998876667789999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF  448 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  448 (480)
                      +.++++++.++++++++++++.|+++.  ...+..+++.|.|+.+++..+.       .....+.+.|+++||++.+.+ 
T Consensus       302 ~~l~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~g~g~~~~i~~~~~~-------~~~~~~~~~L~~~GV~v~~~~-  371 (401)
T PRK00854        302 KVLTEEGMIENAAEMGAYFLEGLRSIR--SNIVREVRGRGLMLAVELEPEA-------GGARQYCEALKERGLLAKDTH-  371 (401)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHhhc--cCceEEEeccceEEEEEEecCc-------hhHHHHHHHHHHCCeEEecCC-
Confidence            998877789999999999999998873  3445678899999998885431       135678899999999997643 


Q ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          449 YGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       449 ~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                       .+++||+|++.+|+++|++++++|++++.
T Consensus       372 -~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        372 -DHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             -CCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence             47999999999999999999999999874

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1.4e-57  Score=464.99  Aligned_cols=385  Identities=37%  Similarity=0.614  Sum_probs=329.3

Q ss_pred             HHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC
Q 011669           60 ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL  139 (480)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~  139 (480)
                      +.++.+..+.++...   +.+.|+++++++|+++||.|||+||||.+|++++++||+||+|.+|+.+++++..+....|.
T Consensus         3 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~   79 (396)
T PRK02627          3 SEAIIELEKKYLMNT---YGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYY   79 (396)
T ss_pred             HHHHHHHHHHhhccc---ccCCCceEEeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccC
Confidence            456666666665443   23558999999999999999999999999999999999999999999999988766555677


Q ss_pred             ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCC-----ceEEEEcCCcccccccccccccCCCccccc
Q 011669          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~-----~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ++...+++++|++..  +.++++|++||+||++.|+++++.++++     ++|++++++|||++..++..++...++...
T Consensus        80 ~~~~~~la~~l~~~~--~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  157 (396)
T PRK02627         80 IEPQEELAEKLVELS--GMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGF  157 (396)
T ss_pred             CHHHHHHHHHHHhhc--CCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccC
Confidence            899999999999986  4589999999999999999999988776     789999999999999998887654332221


Q ss_pred             cC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          215 VQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       215 ~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                      ..  .++..++.         +|    .+++++++.    +++++|++||+++++|..+++++++++|+++|++||+++|
T Consensus       158 ~~~~~~~~~~~~---------~d----~~~l~~~i~----~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI  220 (396)
T PRK02627        158 EPLVEGFIYVPF---------ND----IEALKAAIT----DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLI  220 (396)
T ss_pred             CCCCCCceEeCC---------CC----HHHHHHhcC----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            11  23332222         13    567777773    4799999999999999888899999999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~  372 (480)
                      +||+|+|||++| .+++++..++.||+++|||++++|+|+||+++++++++.+....+..||++|+++++++.++|+.++
T Consensus       221 ~DE~~~g~g~~g-~~~~~~~~~~~pdi~t~sK~~~~G~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~  299 (396)
T PRK02627        221 LDEVQTGMGRTG-KLFAYQHYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIE  299 (396)
T ss_pred             EechhcCCCccC-ceeeehhcCCCCCEEEEcchhhCCcccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999 6777777899999999999999999999999999999988776678999999999999999999988


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCE
Q 011669          373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNV  452 (480)
Q Consensus       373 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~  452 (480)
                      ++++.+++++++++++++|.++..+++.+..+++.|+++++++..          ....+++.|+++||++.+++  .++
T Consensus       300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~~~--~~~  367 (396)
T PRK02627        300 EEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDR----------PAAEIVKKALEKGLLINVTG--DNV  367 (396)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEecC----------cHHHHHHHHHHCCeEEeecC--CCE
Confidence            888999999999999999999887777777889999999998821          14678889999999998865  478


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          453 FRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       453 iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +||+|++.++++++++++++|++++++
T Consensus       368 lRi~~~~~~~~~~i~~~~~~l~~~l~~  394 (396)
T PRK02627        368 LRLLPPLIISKEEIDEAVDRLEEVLKE  394 (396)
T ss_pred             EEEECCcccCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999875

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=100.00  E-value=1.6e-57  Score=465.22  Aligned_cols=374  Identities=29%  Similarity=0.498  Sum_probs=317.5

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL  158 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~  158 (480)
                      .+.|+++.+++|+|+||.|||+||||++|++++++||+||+|.+|+.++++++.+.+..+.++...++++.|++..+  .
T Consensus        11 ~~~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~   88 (400)
T PTZ00125         11 HPLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLFG--Y   88 (400)
T ss_pred             CCCCccEEeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCCC--C
Confidence            34578999999999999999999999999999999999999999999999988776555557777788888887763  5


Q ss_pred             CEEEEeCCHHHHHHHHHHHHHhh--------cCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCc
Q 011669          159 KVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPY  228 (480)
Q Consensus       159 ~~v~f~~sGseA~~~Alk~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~  228 (480)
                      ++++|++||+|||+.||++++.+        +++++||+++++|||.+.+.+..++...+......  .++..+++    
T Consensus        89 ~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  164 (400)
T PTZ00125         89 DKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY----  164 (400)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC----
Confidence            78999999999999999999854        14678999999999999999988764332211111  23333322    


Q ss_pred             CCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcc
Q 011669          229 RGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW  308 (480)
Q Consensus       229 ~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~  308 (480)
                           +|    +++++++++   .+++++|++||+++++|.+.++++|+++|+++|++||+++|+||||+|||++| .++
T Consensus       165 -----~d----~~~le~~l~---~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G-~~~  231 (400)
T PTZ00125        165 -----ND----VEALEKLLQ---DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG-KLL  231 (400)
T ss_pred             -----CC----HHHHHHHhC---CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhh
Confidence                 13    578888885   24799999999999999998889999999999999999999999999999999 666


Q ss_pred             cccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 011669          309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL  387 (480)
Q Consensus       309 ~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l  387 (480)
                      ..+.+++.||++++||++++| +|+||+++++++++.+....+..|++++|+.++++.++|+.+.++++.++++++++++
T Consensus       232 ~~~~~~~~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l  311 (400)
T PTZ00125        232 AHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVF  311 (400)
T ss_pred             HHHhcCCCCCEEEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            677788999999999999988 5999999999999988766677899999999999999999988888899999999999


Q ss_pred             HHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHH
Q 011669          388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD  467 (480)
Q Consensus       388 ~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id  467 (480)
                      +++|+++...++.+..+++.|+++++++..+      .......+.+.|+++||++.+++  ++++||+|++++++++++
T Consensus       312 ~~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~------~~~~~~~~~~~l~~~Gv~v~~~~--~~~lRi~~~~~~~~~~i~  383 (400)
T PTZ00125        312 RDGLKELLKKSPWVKEIRGKGLLNAIVFDHS------DGVNAWDLCLKLKENGLLAKPTH--DNIIRFAPPLVITKEQLD  383 (400)
T ss_pred             HHHHHHHHhcCCCeEEEecccEEEEEEEccC------cchHHHHHHHHHHHCCeEEeecC--CCEEEEECCccCCHHHHH
Confidence            9999998767777778899999999988431      12245678889999999998864  579999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 011669          468 YLVDVMDYSLSK  479 (480)
Q Consensus       468 ~~l~~l~~~l~~  479 (480)
                      +++++|++++++
T Consensus       384 ~~l~~l~~~l~~  395 (400)
T PTZ00125        384 QALEIIKKVLKS  395 (400)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=100.00  E-value=1.7e-57  Score=466.09  Aligned_cols=387  Identities=21%  Similarity=0.286  Sum_probs=306.2

Q ss_pred             HHHHHHHhhhcCCccccc---c-----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc
Q 011669           61 DEILAKRKTFLSPSLFHL---Y-----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~---~-----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~  132 (480)
                      .++.++..++++.+...+   +     ..|+++++|+|+|+||.|||+||||.+|++++++||+||+|++|+.+|++++.
T Consensus         2 ~~l~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~   81 (431)
T PRK06209          2 QLLQSRLHALIPGGAHTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGC   81 (431)
T ss_pred             HHHHHHHHhhCCCCCCCCccccccCCCCCCeEEEeccCCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCc
Confidence            467778888876554321   1     24789999999999999999999999999999999999999999999999875


Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEE-cCCcccccccccccccCCCcc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL-RNAYHGNAAGTMGATAQSNWK  211 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~-~~~yhG~~~~~~~~~~~~~~~  211 (480)
                      +  ....+....+|+++|++.+|. .++|+|+||||||||.|+|+||.++++.+|+.+ .++|||+..+....+....  
T Consensus        82 ~--~~~~~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~--  156 (431)
T PRK06209         82 N--FTRPSAIELDAAESFLELIDG-ADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSA--  156 (431)
T ss_pred             C--CCCCCHHHHHHHHHHHHhCCc-cceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCC--
Confidence            3  223455566899999999874 578999999999999999999999999999999 7888875433322111000  


Q ss_pred             ccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEE
Q 011669          212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (480)
Q Consensus       212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  291 (480)
                       ..+. ....    .....++ +|    +++++++++.. ++++++||+||++++    .++++||++|+++|++||+++
T Consensus       157 -~~~~-~~~~----~~~~~~~-~d----~~~l~~~l~~~-~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lL  220 (431)
T PRK06209        157 -GIPA-SVSA----LTVTFRY-ND----IASLEALFEDH-PGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALF  220 (431)
T ss_pred             -CCCh-hHhc----cccccCC-CC----HHHHHHHHHhC-CCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEE
Confidence             0000 0000    0111122 23    57788888643 458999999999876    678999999999999999999


Q ss_pred             EEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHh--hc----CC--CccccCCCcHHHHHH
Q 011669          292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV--LT----RR--NYFNTFGGNPVCTAA  363 (480)
Q Consensus       292 I~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~--l~----~~--~~~~t~~~~~~~~aa  363 (480)
                      |+||||+||++++  .+..+++++.||++|+||++|+|+|+|++++++++++.  +.    ..  .+.+|+++||++|++
T Consensus       221 I~DEv~tG~~~~~--~g~~~~~gv~PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aa  298 (431)
T PRK06209        221 ILDEMITGFRWHM--RGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAA  298 (431)
T ss_pred             EEEcccccCCcCc--chhhHHhCCCcceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHH
Confidence            9999999997754  22233579999999999999999999999999999986  31    11  267899999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCcee
Q 011669          364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLV  443 (480)
Q Consensus       364 a~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v  443 (480)
                      ++++|++++++++.++++++++++++.|+++..+++.+.++++.|.++.+.++.......+.......+.+.|+++|+++
T Consensus       299 a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~  378 (431)
T PRK06209        299 AIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLM  378 (431)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccc
Confidence            99999999999999999999999999999998889988899999999988887543222343444457888899999987


Q ss_pred             eccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          444 GKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       444 ~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .       .++|+  ..+|++||++++++|++++++
T Consensus       379 p-------~l~is--~~ht~~dId~~l~~l~~~l~~  405 (431)
T PRK06209        379 P-------SLVVS--YAHGDADIERTIDAVHGALGV  405 (431)
T ss_pred             c-------ccccc--ccCCHHHHHHHHHHHHHHHHH
Confidence            2       14454  688999999999999998864

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1.9e-56  Score=452.93  Aligned_cols=364  Identities=33%  Similarity=0.555  Sum_probs=308.9

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      +.|+++++++|+||||.||++||||.+|++.+++|| ||+|.+|+.++++++.+....+.++...++++.|...   ...
T Consensus        10 ~~~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~---~~~   85 (375)
T PRK04260         10 RAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD---KDY   85 (375)
T ss_pred             CCCceEEEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcC---cCC
Confidence            347899999999999999999999999999999999 9999999999998865544445566667777766542   124


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCCCCCCChH
Q 011669          160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGADGE  237 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~  237 (480)
                      .++|++||+|||+.|++++|.++++++||+++++|||++..+++.++...+......  ..+...+        + +|  
T Consensus        86 ~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~d--  154 (375)
T PRK04260         86 LAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAI--------F-ND--  154 (375)
T ss_pred             EEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeC--------C-CC--
Confidence            679999999999999999999999999999999999999999888764433221111  1111111        1 23  


Q ss_pred             HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCc
Q 011669          238 MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP  317 (480)
Q Consensus       238 ~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~p  317 (480)
                        .+++++.++    +++++|++||+++++|.+.++++||++++++|+++|+++|+||+|+|||++| .++.++.+++.|
T Consensus       155 --l~~l~~~l~----~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g-~~~~~~~~~~~p  227 (375)
T PRK04260        155 --LNSVKALVN----KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG-KLYAFEHYGIEP  227 (375)
T ss_pred             --HHHHHHhcC----CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-chhhhHhhCCCC
Confidence              567777663    3789999999999999999899999999999999999999999999999999 676777789999


Q ss_pred             ceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHh
Q 011669          318 DIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK  397 (480)
Q Consensus       318 Divt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~  397 (480)
                      |++||||++++|+|+||+++++++++.+....+.+||++||++++++.++|+.++.+++.+++++.++++++.|.++..+
T Consensus       228 di~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  307 (375)
T PRK04260        228 DIFTLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQD  307 (375)
T ss_pred             CEEEecccccCCcceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999887767889999999999999999999988899999999999999999998888


Q ss_pred             cCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          398 YGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       398 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      ++.+..+++.|+++|+++..+          ...+.+.|+++||++.+.+  .+.+||+||+.+|++|+++++++|++++
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~Gi~v~~~~--~~~lR~~~~~~~t~~~i~~~l~~l~~~~  375 (375)
T PRK04260        308 KETVTTVRGLGYMIGIETTAD----------LSQLVEAARDKGLIVLTAG--TNVIRLLPPLTLTKEEIEQGIAILSEVF  375 (375)
T ss_pred             CCCeeEEeccceEEEEEecCc----------HHHHHHHHHhCCCEEecCC--CCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence            877788999999999998321          4568899999999998764  4789999999999999999999998763

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=100.00  E-value=6.1e-56  Score=455.51  Aligned_cols=392  Identities=42%  Similarity=0.677  Sum_probs=326.5

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc-cCChHHHHHHHHHHHhCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL-YLNHAIADFAEALASKMPGNL  158 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~-~~~~~~~~l~e~L~~~~~~~~  158 (480)
                      +.|+++.+++|.++||.||++||||.+|++.+++||+||+|.+|+.+++.+..+.... +.++...+++++|++.++.+.
T Consensus        17 ~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~   96 (413)
T cd00610          17 PYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGL   96 (413)
T ss_pred             CCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCC
Confidence            4689999999999999999999999999999999999999999999999876543322 257889999999999998667


Q ss_pred             CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCCCCCCCh
Q 011669          159 KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGADG  236 (480)
Q Consensus       159 ~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d~  236 (480)
                      ++++|++||+||++.|+++++.++++++|++++++|||++...+..++...+......  ..+..++.+...+..  .+.
T Consensus        97 ~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  174 (413)
T cd00610          97 DKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPP--AEL  174 (413)
T ss_pred             CEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccch--hhH
Confidence            8999999999999999999998899999999999999999999888764423222111  233444433211100  112


Q ss_pred             HHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCC
Q 011669          237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV  316 (480)
Q Consensus       237 ~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~  316 (480)
                      ...+++++++++.. ++++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+||||+| ..+.++.+++.
T Consensus       175 ~~d~~~l~~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g-~~~~~~~~~~~  252 (413)
T cd00610         175 ADDLEALEEALEEH-PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTG-KMFAFEHFGVE  252 (413)
T ss_pred             HHHHHHHHHHHhcC-CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc-chhhHhhcCCC
Confidence            22366777777643 35799999999999999988899999999999999999999999999999998 56667778899


Q ss_pred             cceeeeccccccCccccccccCHHHHHhh--cCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 011669          317 PDIVTMAKGIGNGIPLGAVVTTPEIAEVL--TRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       317 pDivt~sK~~g~G~pig~v~~~~~~~~~l--~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l  394 (480)
                      ||++|+||++++|+|+||+++++++++.+  ....+.+|+++||++++++.++|+.++++++.+++++++++++++|+++
T Consensus       253 ~d~~t~sK~l~~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~  332 (413)
T cd00610         253 PDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLREL  332 (413)
T ss_pred             CCeEEEcccccCccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999986  4455678999999999999999999988889999999999999999998


Q ss_pred             HHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          395 KDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       395 ~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      ...++.+..+++.|.++++.+..+..+..++......+.+.|.++||++.+++  ++.+|++|++.+|++++++++++|+
T Consensus       333 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~--~~~lR~~~~~~~t~~~i~~~~~~l~  410 (413)
T cd00610         333 AEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG--GNVIRLLPPLIITEEEIDEGLDALD  410 (413)
T ss_pred             HhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC--CCEEEEECCCcCCHHHHHHHHHHHH
Confidence            76667777788999999999865432222333456778899999999999875  5789999999999999999999998


Q ss_pred             HHH
Q 011669          475 YSL  477 (480)
Q Consensus       475 ~~l  477 (480)
                      +++
T Consensus       411 ~~l  413 (413)
T cd00610         411 EAL  413 (413)
T ss_pred             HhC
Confidence            764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-54  Score=404.21  Aligned_cols=421  Identities=26%  Similarity=0.381  Sum_probs=345.4

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCC
Q 011669           37 EHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC  116 (480)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~  116 (480)
                      ......|+-|.+.+.  .+|||+++++.++..++..-...+|+   +..++.-|.|++|+|||++||.++.+.++++|++
T Consensus        19 ~~~n~ep~gP~ikTe--sIPGPks~~l~kel~~v~~t~~v~F~---~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn   93 (484)
T KOG1405|consen   19 VDVNFEPDGPSIKTE--SIPGPKSQELKKELDKVQDTEAVHFF---VDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYN   93 (484)
T ss_pred             cccccCCCCCccccc--cCCCchhHHHHHHHhHhhcccceEEe---hhhhhhcCceEEecCCCeeehhhhhhcccccCCC
Confidence            455567888877653  68999999999988888765544443   6678899999999999999999999999999999


Q ss_pred             CHHHHHHHHH-HHHh-ccc--cccccCC-hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc---------
Q 011669          117 HPYVVDSIVN-QIKR-IQH--STVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT---------  182 (480)
Q Consensus       117 ~p~v~~A~~~-~~~~-~~~--~~~~~~~-~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~---------  182 (480)
                      ||.+++++.+ ++.+ +..  ....|+. +....+.+.|....|.+.+.|++.-|||.|||.|+|.+..+-         
T Consensus        94 ~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~  173 (484)
T KOG1405|consen   94 NPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAG  173 (484)
T ss_pred             CHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHHHhhcCCCCC
Confidence            9999998764 2222 211  1223443 334455555777778889999999999999999999885431         


Q ss_pred             -----------------CCceEEEEcCCcccccccccccccCC-CccccccCCCeeEecCCCCcCCCCCC-------ChH
Q 011669          183 -----------------GCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGA-------DGE  237 (480)
Q Consensus       183 -----------------~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~~~g~~~~~~p~~~~~~~~~-------d~~  237 (480)
                                       +.-.|++|.++|||++.+.++.|... ..+...|...|++.++|. |+.|.+.       ..+
T Consensus       174 ~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaFdWPiA~fP~-ykYPLdenv~~N~ked~  252 (484)
T KOG1405|consen  174 FSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAPFPR-YKYPLDENVAENKKEDQ  252 (484)
T ss_pred             CCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCccccccCCCCCCCCCCCCcc-ccCChhhhhhhhhhhhh
Confidence                             12349999999999999999999754 456778888898888874 5555542       235


Q ss_pred             HHHHHHHHHHHccC--CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC
Q 011669          238 MYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV  315 (480)
Q Consensus       238 ~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~  315 (480)
                      .|++++|++|....  ...++++|+||+|++||....+++|+++|+++|+|||+.+|+||||||-|-|| ++|+++++++
T Consensus       253 ~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG-k~WaHehw~l  331 (484)
T KOG1405|consen  253 GCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG-KFWAHEHWNL  331 (484)
T ss_pred             hHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC-ceeeehhcCC
Confidence            58999999998643  24799999999999999999999999999999999999999999999999999 8999999987


Q ss_pred             --Ccceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011669          316 --VPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       316 --~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~  392 (480)
                        .||+|||||-+- ||+     .-.++++. -....+++||.|.|.-.....+++++|+++++.+++...|+.|..+|.
T Consensus       332 ~~PpD~vTFSKK~q~gGf-----fh~~~frp-n~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~  405 (484)
T KOG1405|consen  332 DSPPDVVTFSKKFQTGGF-----FHDEEFRP-NEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLL  405 (484)
T ss_pred             CCCccceehhhhhhcCcc-----ccCcccCC-CchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence              689999999887 553     23333321 112347899999999999999999999999999999999999999999


Q ss_pred             HhHHhcC-ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHH
Q 011669          393 ALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       393 ~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~  471 (480)
                      +|.+++| .+..+||+|.|+.+++        |.....+.+...++-+|+.++.||  ...|||.|+++..+.+.+-+++
T Consensus       406 ~Lq~~~p~~~~~~RGrGTF~a~d~--------ps~~~Rdk~i~~~~~nGv~~GGCg--~~siRfRPsLvf~~~Ha~i~l~  475 (484)
T KOG1405|consen  406 ELQAKYPGKINNLRGRGTFIAWDC--------PSGSIRDKLILIARLNGVNLGGCG--DKSIRFRPSLVFRKHHADIFLD  475 (484)
T ss_pred             HHHHhCchhhhcccccceEEEEeC--------CChHHHHHHHHHHHHcCceecccc--cceeeeccceeehhhhHHHHHH
Confidence            9999996 5778999999999998        444556788999999999998877  5789999999999999999999


Q ss_pred             HHHHHHhhC
Q 011669          472 VMDYSLSKM  480 (480)
Q Consensus       472 ~l~~~l~~~  480 (480)
                      +|+++++.+
T Consensus       476 ~~~k~l~~l  484 (484)
T KOG1405|consen  476 IFDKILAGL  484 (484)
T ss_pred             HHHHHhccC
Confidence            999998753

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=100.00  E-value=5e-50  Score=407.06  Aligned_cols=365  Identities=39%  Similarity=0.669  Sum_probs=306.1

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      +.|+++++++|.++||.||++||||.+|++.+++||+||.|.+++.+++.+..+....|.++...+|+++|+++++  .+
T Consensus         8 ~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~   85 (379)
T TIGR00707         8 RLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSG--AD   85 (379)
T ss_pred             CCCccEEEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCC--CC
Confidence            5689999999999999999999999999999999999999999999999987655556778899999999999995  46


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhcC-----CceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCCCC
Q 011669          160 VVFFTNSGTEANELAIMMARLYTG-----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVF  232 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~~-----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~~  232 (480)
                      ++++++||+||++.|+++++.+++     +++|++++++|||+...+...++...+......  ..+...+        +
T Consensus        86 ~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  157 (379)
T TIGR00707        86 RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAP--------Y  157 (379)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeC--------C
Confidence            899999999999999999887665     689999999999999998877764432211100  1111111        1


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA  312 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~  312 (480)
                       +|    .+++++.++    +++++|++||+++++|..+++.+++++|.++|++||+++|+||+|++||++| ..+.++.
T Consensus       158 -~d----~~~l~~~~~----~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g-~~~~~~~  227 (379)
T TIGR00707       158 -ND----IESLKKAID----DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG-KFFAYEH  227 (379)
T ss_pred             -CC----HHHHHHHhh----hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhhhHHh
Confidence             13    567777775    2678999999999999877889999999999999999999999999999988 4555556


Q ss_pred             cCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011669          313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       313 ~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~  392 (480)
                      .++.||+++|||++++|+|+||+++++++++.+....+..+|+.|+++++++.++|+.++.+++.+++++++++++++|+
T Consensus       228 ~~~~~d~~t~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~  307 (379)
T TIGR00707       228 YGIEPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLE  307 (379)
T ss_pred             cCCCCCEEEEcccccCCcccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            68889999999999999999999999999998887666788999999999999999988777788999999999999999


Q ss_pred             HhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHH
Q 011669          393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV  472 (480)
Q Consensus       393 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~  472 (480)
                      ++....+. ..+++.|.++++++..+          ...+.+.|+++||++.+.+  .+++||+|++.+|++++++++++
T Consensus       308 ~~~~~~~~-~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~Gv~v~~~~--~~~lRi~~~~~~t~~~i~~~~~~  374 (379)
T TIGR00707       308 ELGKNYPN-KEVRGKGLMLGIELEAP----------CKDIVKKALEKGLLVNCAG--PKVLRFLPPLIITKEEIDEAVSA  374 (379)
T ss_pred             HHHhhCCC-CccccCceEEEEEecCc----------HHHHHHHHHHCCcEEeeCC--CCEEEEECCCcCCHHHHHHHHHH
Confidence            87554443 44667789999987421          3578888999999999865  47899999999999999999999


Q ss_pred             HHHHH
Q 011669          473 MDYSL  477 (480)
Q Consensus       473 l~~~l  477 (480)
                      |++++
T Consensus       375 l~~~~  379 (379)
T TIGR00707       375 LEEAI  379 (379)
T ss_pred             HHHhC
Confidence            98763

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK07505 hypothetical protein; Provisional

Probab=100.00  E-value=3.5e-39  Score=329.65  Aligned_cols=349  Identities=15%  Similarity=0.202  Sum_probs=248.8

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCC-CCCHHHHHHHHHHHHhcc--c-ccc--ccCChHHHHHHHHHHHh
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQ--H-STV--LYLNHAIADFAEALASK  153 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~--~-~~~--~~~~~~~~~l~e~L~~~  153 (480)
                      +.++.+++|+|+++||.||++||||.+.   ..+| |+||+|++|+.+|+++.+  + ...  .+.++...+++++|++.
T Consensus        27 ~~~~~~~~~~G~~~~d~~g~~~ld~~s~---~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~  103 (402)
T PRK07505         27 LNGLTVGEREGILITLADGHTFVNFVSC---SYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSEL  103 (402)
T ss_pred             cccceeeccCCccEEecCCceEEEeecC---CccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHH
Confidence            3457899999999999999999999873   5678 999999999999998753  2 111  23467889999999999


Q ss_pred             CCCCCCEEEEeCCHHHHHHHHHHHHHh--hc-CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCC
Q 011669          154 MPGNLKVVFFTNSGTEANELAIMMARL--YT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG  230 (480)
Q Consensus       154 ~~~~~~~v~f~~sGseA~~~Alk~ar~--~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~  230 (480)
                      ++.   ++++++||++|++.++++++.  ++ ++.++|+++++|||........      ...  ..++..++.+     
T Consensus       104 ~~~---~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~------~~~--~~~v~~~~~~-----  167 (402)
T PRK07505        104 FGA---SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGI------CAD--ETEVETIDHN-----  167 (402)
T ss_pred             hCC---CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhh------hhc--CCeEEEeCCC-----
Confidence            864   467888999999999998763  23 4667999999999843211111      000  1133333322     


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc--cCccccCCCcc
Q 011669          231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ--AGFARTGSHFW  308 (480)
Q Consensus       231 ~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~--tgfgr~G~~~~  308 (480)
                          |    .++++++++.   +..+++++||+|++|+ +.+    +++|+++|++||++||+||+|  ++||++| ..+
T Consensus       168 ----d----~~~l~~~~~~---~~~~~vl~~p~~~~G~-~~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g-~~~  230 (402)
T PRK07505        168 ----D----LDALEDICKT---NKTVAYVADGVYSMGG-IAP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNG-EGY  230 (402)
T ss_pred             ----C----HHHHHHHHhc---CCCEEEEEecccccCC-cCC----HHHHHHHHHHcCCEEEEECcccccCcCCCC-Cch
Confidence                3    5677777753   3578999999987755 444    899999999999999999998  6789988 555


Q ss_pred             cccccCC-Cccee----eeccccccCccccccc-cCHHHHHhhcCCCccccCCCc--HHHHHHHHHHHHHhhhhHHHHHH
Q 011669          309 GFEAHGV-VPDIV----TMAKGIGNGIPLGAVV-TTPEIAEVLTRRNYFNTFGGN--PVCTAAGHAVLKVIQKDKLQNNA  380 (480)
Q Consensus       309 ~~~~~~~-~pDiv----t~sK~~g~G~pig~v~-~~~~~~~~l~~~~~~~t~~~~--~~~~aaa~a~L~~i~~~~~~~~~  380 (480)
                      ..+..+. .||.+    |+||+++++  .|+++ .++++++.+....+..||+++  +++++++.++++.+.++.+.+. 
T Consensus       231 ~~~~~~~~~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~-  307 (402)
T PRK07505        231 VRSELDYRLNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQL-  307 (402)
T ss_pred             HHHHcCCCCCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHH-
Confidence            5666776 67744    799999853  26665 478888888765666777655  5899999999987655544332 


Q ss_pred             HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEE
Q 011669          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRI  455 (480)
Q Consensus       381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi  455 (480)
                         .+++++.+..+...  ....+++.++++......       .......+.+.|+++||++.+...     ..++|||
T Consensus       308 ---~~~l~~~~~~~~~~--~~~~~~g~~~~i~~~~~~-------~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi  375 (402)
T PRK07505        308 ---QQKLQNNIALFDSL--IPTEQSGSFLPIRLIYIG-------DEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRI  375 (402)
T ss_pred             ---HHHHHHHHHHHHHH--HHhcCCCCCCCEEEEEeC-------CHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEE
Confidence               23333333322111  112235555554322211       112356788999999999987521     1268999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          456 TPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +|++.+|++|+++++++|++++++
T Consensus       376 ~~~~~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        376 MFRASHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             ecCccCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998864

>PLN02822 serine palmitoyltransferase

Probab=100.00  E-value=1.1e-35  Score=308.40  Aligned_cols=354  Identities=13%  Similarity=0.080  Sum_probs=260.4

Q ss_pred             eEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-----cccCChHHHHHHHHHHHhCCCC
Q 011669           83 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-----VLYLNHAIADFAEALASKMPGN  157 (480)
Q Consensus        83 ~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-----~~~~~~~~~~l~e~L~~~~~~~  157 (480)
                      .++.+++|.+++ .||++||||.++.+....  +||+|.+|+.+++++.++.+     ..++++...+|+++|+++++. 
T Consensus        94 ~~~~~~~G~~i~-~~G~~~id~~s~~~lgl~--~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~-  169 (481)
T PLN02822         94 PVLESAAGPHTI-INGKDVVNFASANYLGLI--GNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT-  169 (481)
T ss_pred             CceecCCCCeEE-ECCceEEEeECCCcCCCC--CCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC-
Confidence            478889999999 899999999988665433  48999999999999864421     134578899999999999985 


Q ss_pred             CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChH
Q 011669          158 LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGE  237 (480)
Q Consensus       158 ~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~  237 (480)
                      .+.|+|++|++ ++..+++.   ++++.++|++++.||+.....+.+.+..          +..++.         +|. 
T Consensus       170 ~~~i~~s~G~~-a~~sai~a---~~~~gd~Ii~d~~~H~s~~~~~~ls~~~----------~~~~~~---------nd~-  225 (481)
T PLN02822        170 PDSILYSYGLS-TIFSVIPA---FCKKGDIIVADEGVHWGIQNGLYLSRST----------IVYFKH---------NDM-  225 (481)
T ss_pred             CCEEEECCHHH-HHHHHHHH---hCCCCCEEEEeCCccHHHHHHHHHcCCe----------EEEECC---------CCH-
Confidence            36787776655 78887773   4567778889999998876666655421          112211         232 


Q ss_pred             HHHHHHHHHHHccC-----CCce-EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc--CccccCCCccc
Q 011669          238 MYAKDVQDLIDFGT-----SGHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA--GFARTGSHFWG  309 (480)
Q Consensus       238 ~~~~~le~~i~~~~-----~~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t--gfgr~G~~~~~  309 (480)
                         ++++..+++..     .+++ ++|++|++++++|.+.+    +++|+++|++||+++|+||+|+  .+|++| .. .
T Consensus       226 ---~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G-~G-~  296 (481)
T PLN02822        226 ---ESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSG-RG-L  296 (481)
T ss_pred             ---HHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCC-CC-h
Confidence               33333333210     1234 89999999999999987    9999999999999999999998  346666 33 3


Q ss_pred             ccccCC---Ccceee--eccccc-cCccccccccCHHHHHhhcCCCccccCCCc--HHHHHHHHHHHHHhhh-hHHHHHH
Q 011669          310 FEAHGV---VPDIVT--MAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGN--PVCTAAGHAVLKVIQK-DKLQNNA  380 (480)
Q Consensus       310 ~~~~~~---~pDivt--~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~--~~~~aaa~a~L~~i~~-~~~~~~~  380 (480)
                      .+++++   .+|+++  |||++| .|   ||+++++++++.+....+..+|+++  |..+++++++|+.+++ ++..+++
T Consensus       297 ~e~~~v~~~~~dii~~s~sKalg~~G---G~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l  373 (481)
T PLN02822        297 SEHFGVPIEKIDIITAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKL  373 (481)
T ss_pred             HHHcCCCCCCCeEEEecchhhhhhCC---eEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            567776   688876  889998 24   7899999999988876777888876  8889999999998766 5788899


Q ss_pred             HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCc--C-----CCE
Q 011669          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGF--Y-----GNV  452 (480)
Q Consensus       381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~--~-----~~~  452 (480)
                      +++++++++.|+++.   ++.....+.+.++++.+.........+......+++.|+ ++||++.++..  +     ...
T Consensus       374 ~~~~~~l~~~L~~~~---g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~  450 (481)
T PLN02822        374 KENIALLHKGLSDIP---GLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVG  450 (481)
T ss_pred             HHHHHHHHHHHHhcC---CcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCc
Confidence            999999999998752   211122345666677763211111111223567888887 88999987521  1     246


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          453 FRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       453 iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +||+.+..+|++||++++++|++++.+
T Consensus       451 lRi~is~~~t~edI~~~~~~l~~~~~~  477 (481)
T PLN02822        451 IRLFVSAGHTESDILKASESLKRVAAS  477 (481)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            999988999999999999999998765

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=100.00  E-value=6.9e-34  Score=290.95  Aligned_cols=331  Identities=18%  Similarity=0.170  Sum_probs=245.5

Q ss_pred             CCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhccccc---c--ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST---V--LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~---~--~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA  170 (480)
                      +|+++|+|+++.+   ||. +||+|++|+.++++++++..   .  .+.++...+|+++|++.++.  +.++|++||++|
T Consensus        43 ~~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--~~~~~~~SG~~A  117 (406)
T PRK13393         43 GPREVTVWCSNDY---LGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK--EAALLFTSGYVS  117 (406)
T ss_pred             CCccEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC--CcEEEeCCcHHH
Confidence            4689999987744   466 69999999999999876432   1  23356789999999999964  678899999999


Q ss_pred             HHHHHH-HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          171 NELAIM-MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       171 ~~~Alk-~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      |+.|++ +++.+  ++++|+++..||+.....+...+..          +..++.         +|    .++++++++.
T Consensus       118 n~~ai~~l~~~~--~g~~I~~~~~~H~s~~~~~~~~g~~----------~~~~~~---------~d----~~~l~~~l~~  172 (406)
T PRK13393        118 NWAALSTLGSRL--PGCVILSDELNHASMIEGIRHSRAE----------KRIFRH---------ND----PADLERKLSD  172 (406)
T ss_pred             HHHHHHHhhcCC--CCCEEEEccchhHHHHHHHHHcCCe----------EEEeCC---------CC----HHHHHHHHHh
Confidence            999999 45433  3468888999999888776554321          111111         23    4567777754


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-Cc-cccCCCcccccccCCC--ccee--eec
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFWGFEAHGVV--PDIV--TMA  323 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gf-gr~G~~~~~~~~~~~~--pDiv--t~s  323 (480)
                      ..++++++|++|++++++|.+.+    +++|.++|++||+++|+||+|+ |+ |++| ..+ .++.++.  +|++  |||
T Consensus       173 ~~~~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G-~g~-~~~~~~~~~~~i~~~tls  246 (406)
T PRK13393        173 LDPHRPKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRG-GGI-AEREGLADRLTIIEGTLA  246 (406)
T ss_pred             ccCCCCEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCC-Cch-hhhcCCCCCCeEEEEeCc
Confidence            32346789999999999999987    9999999999999999999997 66 7777 333 2455554  5776  999


Q ss_pred             ccccc-CccccccccCHHHHHhhcCCCc--cccCCCcHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          324 KGIGN-GIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQKDK-LQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       324 K~~g~-G~pig~v~~~~~~~~~l~~~~~--~~t~~~~~~~~aaa~a~L~~i~~~~-~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      |++|. |   ||+++++++++.+.....  ..+.+.+|.+++++.++|+.+++.. ..++.+++++++++.|+++  .++
T Consensus       247 Ka~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  321 (406)
T PRK13393        247 KAFGVMG---GYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA--GIP  321 (406)
T ss_pred             hhhcccC---ceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc--CCC
Confidence            99983 4   778899998888765432  2466788999999999999876543 2355567788888888764  222


Q ss_pred             ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCc-----CCCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGF-----YGNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       400 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~-----~~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                         .+++.|.++.+.+..        ......+.+.|++ +||++.+...     ..+.+||+|++.+|++|+|+++++|
T Consensus       322 ---~~~~~~~i~~v~~~~--------~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l  390 (406)
T PRK13393        322 ---HLPNPSHIVPVMVGD--------PVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQAL  390 (406)
T ss_pred             ---cCCCCCCeEEEEeCC--------HHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence               246678887775421        1235678888887 5999976421     2368999999999999999999999


Q ss_pred             HHHHhh
Q 011669          474 DYSLSK  479 (480)
Q Consensus       474 ~~~l~~  479 (480)
                      ++++++
T Consensus       391 ~~~~~~  396 (406)
T PRK13393        391 SEIWAR  396 (406)
T ss_pred             HHHHHh
Confidence            998764

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=100.00  E-value=2.6e-32  Score=279.17  Aligned_cols=334  Identities=18%  Similarity=0.195  Sum_probs=242.3

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA  170 (480)
                      .+|+++++|+++.+. .|+ +||+|++|+.+++++.++...     .+.++...+|+++|+++++.  +.+++++||++|
T Consensus        42 ~~~~~~~~~~sn~yl-gl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~--~~~l~~~sG~~a  117 (402)
T TIGR01821        42 DGAKDVTVWCSNDYL-GMG-QHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK--ESALVFTSGYVA  117 (402)
T ss_pred             CCCeeEEEeEccCcC-CCC-CCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC--CeEEEECchHHH
Confidence            356999999877553 243 589999999999998754321     23467889999999999963  567899999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      |+.+++++... .++.+++.+..||+.....+...+.+.          ...+.         +|    .++++++++..
T Consensus       118 n~~ai~~l~~~-~~~~~v~~~~~~h~s~~~~~~~~g~~~----------~~~~~---------~d----~~~l~~~l~~~  173 (402)
T TIGR01821       118 NDATLATLAKI-IPGCVIFSDELNHASMIEGIRHSGAEK----------FIFRH---------ND----VAHLEKLLQSV  173 (402)
T ss_pred             HHHHHHHhhCC-CCCCEEEEcchHhHHHHHHHHHcCCeE----------EEECC---------CC----HHHHHHHHHhc
Confidence            99999987643 235677778889988766655443211          11111         23    46777777643


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-C-ccccCCCcccccccCC--Cccee--eecc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-G-FARTGSHFWGFEAHGV--VPDIV--TMAK  324 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-g-fgr~G~~~~~~~~~~~--~pDiv--t~sK  324 (480)
                      .++++++|++|++++++|.+.+    +++|+++|++||+++|+||+|+ | +|..| ... .+..++  .+|++  ||||
T Consensus       174 ~~~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g-~g~-~~~~~~~~~~div~~t~sK  247 (402)
T TIGR01821       174 DPNRPKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRG-GGI-AERDGLMHRIDIIEGTLAK  247 (402)
T ss_pred             cCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCC-Ccc-chhccCCCCCeEEEEechh
Confidence            3346789999999999999877    9999999999999999999998 4 24444 211 234454  46777  8999


Q ss_pred             cccc-CccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          325 GIGN-GIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKD-KLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       325 ~~g~-G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      ++|. |   ||+++++++++.+....  +..+.+.+|.++++++++|+.+++. .+.++..++++++++.|+++  .++.
T Consensus       248 a~g~~G---G~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~  322 (402)
T TIGR01821       248 AFGVVG---GYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL--GIPV  322 (402)
T ss_pred             hhccCC---ceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc--CCCc
Confidence            9983 4   77889999988876422  2346678999999999999988754 34556677888888888765  2322


Q ss_pred             eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCc-----CCCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGF-----YGNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       401 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~-----~~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                         +.+.+.++.+.+.        .......+.+.|++ +||++.+...     ..+++||+|++.+|++||++++++|+
T Consensus       323 ---~~~~~~i~~i~~~--------~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~  391 (402)
T TIGR01821       323 ---IPNPSHIVPVIIG--------DAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALL  391 (402)
T ss_pred             ---CCCCCCEEEEEeC--------CHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence               2345667666541        11235668888865 5999976421     23689999999999999999999999


Q ss_pred             HHHhh
Q 011669          475 YSLSK  479 (480)
Q Consensus       475 ~~l~~  479 (480)
                      +++++
T Consensus       392 ~~~~~  396 (402)
T TIGR01821       392 LVWDR  396 (402)
T ss_pred             HHHHH
Confidence            98875

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=100.00  E-value=2.6e-32  Score=279.67  Aligned_cols=331  Identities=19%  Similarity=0.220  Sum_probs=241.1

Q ss_pred             CCEEEeccCCcccccCCCC-CHHHHHHHHHHHHhccccc----cc-cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQHST----VL-YLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~----~~-~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~  171 (480)
                      |++++||+++..   ||++ ||+|++|+.+++++.++..    .. +.++...+|+++|+++++.  +..++++||++||
T Consensus        45 ~~~~~~~~s~dy---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~--~~~~~~~sG~~an  119 (407)
T PRK09064         45 EREVTVWCSNDY---LGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGK--EAALVFTSGYVSN  119 (407)
T ss_pred             CceEEEEECCCC---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCC--CcEEEECcHHHHH
Confidence            699999987643   5676 8999999999998875432    12 3577889999999999863  5567889999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      +.++++++... ++.+++.+..+|+.....+...+.+          +...+.         +|    .++++++++...
T Consensus       120 ~~ai~~l~~~~-~~~~i~~~~~~h~s~~~~~~~~~~~----------~~~~~~---------~d----~~~le~~l~~~~  175 (407)
T PRK09064        120 DATLSTLAKLI-PDCVIFSDELNHASMIEGIRRSRCE----------KHIFRH---------ND----VAHLEELLAAAD  175 (407)
T ss_pred             HHHHHHHhCCC-CCCEEEEeCcchHHHHHHHHHcCCc----------EEEECC---------CC----HHHHHHHHHhcc
Confidence            99999876432 3466666666677655444333211          111111         23    467888776432


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-C-ccccCCCcccccccCC--Cccee--eeccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-G-FARTGSHFWGFEAHGV--VPDIV--TMAKG  325 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-g-fgr~G~~~~~~~~~~~--~pDiv--t~sK~  325 (480)
                      ++++++|++|++++++|.+.+    +++|+++|++||+++|+||+|+ | ||++| ..+ .++.++  .+|++  ||||+
T Consensus       176 ~~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g-~g~-~~~~~~~~~~div~~t~sKa  249 (407)
T PRK09064        176 PDRPKLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRG-GGI-AERDGLMDRIDIIEGTLAKA  249 (407)
T ss_pred             CCCCeEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCC-CCh-HHhcCCCCCCeEEEEecchh
Confidence            346889999999999998887    9999999999999999999997 5 57777 333 344454  46887  99999


Q ss_pred             ccc-CccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669          326 IGN-GIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKDK-LQNNAHVVGSYLKERLTALKDKYGII  401 (480)
Q Consensus       326 ~g~-G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~~~-~~~~~~~~~~~l~~~L~~l~~~~~~~  401 (480)
                      +|. |   ||+++++++++.+....  +..+.+.+|.++++++++|+.+++.+ ..++++++++++++.|+++  .++. 
T Consensus       250 ~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~-  323 (407)
T PRK09064        250 FGVMG---GYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA--GIPV-  323 (407)
T ss_pred             hhccC---ceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCCC-
Confidence            983 4   78899999888775432  23466788999999999999887643 4577888888998888775  2322 


Q ss_pred             eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCc-----CCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGF-----YGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       402 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~-----~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                        +.+.+.++.+.+.        .......+.+.|++ +||++.+...     ..+++||+|++.+|++|+++++++|++
T Consensus       324 --~~~~~~iv~i~~~--------~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~  393 (407)
T PRK09064        324 --MPNESHIVPVMVG--------DPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVE  393 (407)
T ss_pred             --CCCCCCEEEEEeC--------CHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence              2234566666542        11235678888864 6999976421     136899999999999999999999999


Q ss_pred             HHhh
Q 011669          476 SLSK  479 (480)
Q Consensus       476 ~l~~  479 (480)
                      ++++
T Consensus       394 ~~~~  397 (407)
T PRK09064        394 VWAR  397 (407)
T ss_pred             HHHH
Confidence            8765

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=100.00  E-value=1e-31  Score=273.17  Aligned_cols=347  Identities=19%  Similarity=0.225  Sum_probs=246.2

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhccccc-----cccCChHHHHHHHHHHH
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST-----VLYLNHAIADFAEALAS  152 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~-----~~~~~~~~~~l~e~L~~  152 (480)
                      |+.-..+++++|.|+|+ +|++||||.++.   ++|| ++|+|++++.+++.+..+..     ..+..+...++++++++
T Consensus        20 ~~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~   95 (385)
T PRK05958         20 YRSLRPREGGAGRWLVV-DGRRMLNFASND---YLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAE   95 (385)
T ss_pred             CccccccccCCCceeEe-CCceEEEeeCCC---cccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHH
Confidence            33435789999999997 999999999874   4787 78999999999998753211     12346778899999999


Q ss_pred             hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                      +++.  ++++++++|++++..+++...  .+++.|++.+ .+|+.........+            .....++.      
T Consensus        96 ~~~~--~~~i~~~~g~~~~~~~l~~~~--~~gd~V~~~~-~~~~~~~~~~~~~g------------~~~~~~~~------  152 (385)
T PRK05958         96 WFGA--ERALLFSSGYAANLAVLTALA--GKGDLIVSDK-LNHASLIDGARLSR------------ARVRRYPH------  152 (385)
T ss_pred             HhCC--CcEEEECcHHHHHHHHHHHhC--CCCCEEEEeC-ccCHHHHHHHHhcC------------CceEEeCC------
Confidence            9863  456788899999998876542  2455666554 55665554444332            21222221      


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC--ccccCCCcccc
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGF  310 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg--fgr~G~~~~~~  310 (480)
                       .|    .++++++++.. ++++++++++++++++|...+    +++|.++|++||+++|+||+|+.  ++++|..+...
T Consensus       153 -~d----~~~l~~~i~~~-~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~  222 (385)
T PRK05958        153 -ND----VDALEALLAKW-RAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAE  222 (385)
T ss_pred             -CC----HHHHHHHHHhc-cCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHh
Confidence             12    46788877642 225788999999998887765    99999999999999999999952  34444211111


Q ss_pred             cccCCCcc---eeeeccccccCccccccccCHHHHHhhcCC--CccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHH
Q 011669          311 EAHGVVPD---IVTMAKGIGNGIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVG  384 (480)
Q Consensus       311 ~~~~~~pD---ivt~sK~~g~G~pig~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~  384 (480)
                      ......+|   +.++||+++.  +.||+++++++++.+...  .+..+.+.+++.++++.++|+.+++ +++.+++.+++
T Consensus       223 ~~~~~~~~~i~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~  300 (385)
T PRK05958        223 AGLAGEPDVILVGTLGKALGS--SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALI  300 (385)
T ss_pred             hCCCCCCceEEEEechhhccc--CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            11223455   5589999974  228899999988776432  2334556788888889899988765 36778888888


Q ss_pred             HHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCC
Q 011669          385 SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPL  459 (480)
Q Consensus       385 ~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~  459 (480)
                      +++.+.|+++  .+.   .+.+.|.++++.+.        ......++.+.|+++||.+.++..     ..+++||+|+.
T Consensus       301 ~~l~~~L~~~--~~~---~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~  367 (385)
T PRK05958        301 ARLRAGLRAL--GFQ---LMDSQSAIQPLIVG--------DNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTA  367 (385)
T ss_pred             HHHHHHHHHc--CCC---cCCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecC
Confidence            8888888875  122   23456778887762        123456788999999999986421     13689999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 011669          460 CFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       460 ~~t~~~id~~l~~l~~~l  477 (480)
                      .++++++++++++|++++
T Consensus       368 ~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        368 AHTEADIDRLLEALAEAL  385 (385)
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence            999999999999998763

>PRK07179 hypothetical protein; Provisional

Probab=100.00  E-value=3.5e-31  Score=271.21  Aligned_cols=337  Identities=18%  Similarity=0.194  Sum_probs=239.9

Q ss_pred             ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc---ccccccC--ChHHHHHHHHHHH
Q 011669           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYL--NHAIADFAEALAS  152 (480)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~~~~~--~~~~~~l~e~L~~  152 (480)
                      +.+.|++..++.|.+++|.+||+||||.          +||+|++++.+++++.+   +.+..+.  .+...+|+++|++
T Consensus        41 ~~~~~~~~~~~~g~~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~  110 (407)
T PRK07179         41 WNGKHLVLGKTPGPDAIILQSNDYLNLS----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAA  110 (407)
T ss_pred             cCCceEEeecCCCCcEEEeecCCccCCC----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHH
Confidence            3467899999999999999999999986          68999999999998752   2233333  3577899999999


Q ss_pred             hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                      .++.  +.++|++||++||+.+++.+..  +++.|++. ...|..........            ++...+++.      
T Consensus       111 ~~g~--~~~~~~~sG~~An~~~l~~l~~--~g~~v~~~-~~~h~s~~~~~~~~------------g~~~~~~~~------  167 (407)
T PRK07179        111 FTGF--ESCLLCQSGWAANVGLLQTIAD--PNTPVYID-FFAHMSLWEGVRAA------------GAQAHPFRH------  167 (407)
T ss_pred             HhCC--CcEEEECCHHHHHHHHHHHhCC--CCCEEEEE-CCcCHHHHHHHHHC------------CCeEEEecC------
Confidence            9864  5678999999999999997653  34555554 33343222221111            222222211      


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC--ccccCCCcccc
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGF  310 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg--fgr~G~~~~~~  310 (480)
                       +|    .++++++++.   .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.  +|++| ..+ +
T Consensus       168 -~d----~~~l~~~l~~---~~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g-~g~-~  233 (407)
T PRK07179        168 -ND----VDHLRRQIER---HGPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQG-AGL-V  233 (407)
T ss_pred             -CC----HHHHHHHHHh---cCCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCC-Cch-H
Confidence             23    5778888863   24689999999999999987    99999999999999999999973  23444 211 3


Q ss_pred             cccCCC--ccee--eeccccccCccccccccCHHHHHhhcCCC----ccccCCCcHHHHHHHHHHHHHhhhh-HHHHHHH
Q 011669          311 EAHGVV--PDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKD-KLQNNAH  381 (480)
Q Consensus       311 ~~~~~~--pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~----~~~t~~~~~~~~aaa~a~L~~i~~~-~~~~~~~  381 (480)
                      ..+++.  +|++  |++|++++  |+|++++++++++.+....    +.+|+  ++..++++.++++.+.+. ...++++
T Consensus       234 ~~~~~~~~vdi~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~l~  309 (407)
T PRK07179        234 AELGLTSRVHFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAIFSSTL--LPHEIAGLEATLEVIESADDRRARLH  309 (407)
T ss_pred             HhcCCCCCCCEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            344543  4775  57899974  6899999999887765322    22333  345555666778877554 4778889


Q ss_pred             HHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee----ccCc-CCCEEEEe
Q 011669          382 VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG----KGGF-YGNVFRIT  456 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~~-~~~~iRi~  456 (480)
                      ++.+++++.|+++  .+    .+++.+.++++.+..        ......+.+.|.++||++.    +... ..+.+||+
T Consensus       310 ~~~~~l~~~L~~~--g~----~v~~~~~i~~l~~~~--------~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis  375 (407)
T PRK07179        310 ANARFLREGLSEL--GY----NIRSESQIIALETGS--------ERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLS  375 (407)
T ss_pred             HHHHHHHHHHHHc--CC----CCCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEE
Confidence            9999999988875  22    233567788887521        1235667888999999743    2211 24789999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhh
Q 011669          457 PPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       457 p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++..+|++||++++++|++++++
T Consensus       376 ~~~~~t~edi~~~~~~l~~~~~~  398 (407)
T PRK07179        376 LNADLTASDLDRVLEVCREARDE  398 (407)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998764

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=100.00  E-value=5.8e-31  Score=267.80  Aligned_cols=348  Identities=16%  Similarity=0.172  Sum_probs=240.7

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhccccc-----cccCChHHHHHHHHHHH
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST-----VLYLNHAIADFAEALAS  152 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~-----~~~~~~~~~~l~e~L~~  152 (480)
                      |..|..+.+++|.||| .||++||||.++   ..+|| ++|.+.+++.+++.+..+..     ..+..+...++++++++
T Consensus        14 ~~~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~   89 (385)
T TIGR01825        14 YISIRVLESAQGPRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAK   89 (385)
T ss_pred             cccccccccCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHH
Confidence            3457899999999999 999999999875   33688 89999999999988653321     12346778899999999


Q ss_pred             hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                      .++.  +..++.+||++|+..+++.+.  .+++.|++.+ .+|+.....+...+.            ....++.      
T Consensus        90 ~~g~--~~~i~~~sG~~a~~~a~~~~~--~~gd~vi~~~-~~~~~~~~~~~~~g~------------~~~~~~~------  146 (385)
T TIGR01825        90 FKKT--EAALVFQSGFNTNQGVLSALL--RKGDIVLSDE-LNHASIIDGLRLTKA------------TKKIYKH------  146 (385)
T ss_pred             HhCC--CcEEEECcHHHHHHHHHHHhC--CCCCEEEEEc-cccHHHHHHHHhcCC------------ceEEeCC------
Confidence            8864  345677888999999888654  3556666555 455544433333221            1111110      


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC--ccccCCCcccc
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGF  310 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg--fgr~G~~~~~~  310 (480)
                       .|    .+++++.++.....++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.  ++++| . ...
T Consensus       147 -~d----~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~-~-~~~  215 (385)
T TIGR01825       147 -AD----MDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAG-R-GTV  215 (385)
T ss_pred             -CC----HHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCC-C-ccH
Confidence             12    456777665432346889999999999998776    99999999999999999999964  34444 1 112


Q ss_pred             cccCCCcc----eeeeccccccCccccccccCHHHHHhhcCCCc--cccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHH
Q 011669          311 EAHGVVPD----IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVV  383 (480)
Q Consensus       311 ~~~~~~pD----ivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~--~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~  383 (480)
                      ..+++.+|    +.+|||+++.  +.||+++++++++.+.....  ..+...++..++++.++|+.+.+ .+..+++.++
T Consensus       216 ~~~~~~~~~~i~~~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~  293 (385)
T TIGR01825       216 HHFGLEDKVDIQVGTLSKAIGV--VGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDN  293 (385)
T ss_pred             hhcCCCcCCcEEEEeccHHhhc--CCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            22333333    4689999963  34889999998888754322  12223567888888898887643 4577888888


Q ss_pred             HHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCC
Q 011669          384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPP  458 (480)
Q Consensus       384 ~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~  458 (480)
                      ++++.+.|.++  .++.   ....+.++++.+.        .......+.+.|+++||++...+.     ..+++|++|+
T Consensus       294 ~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~--------~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~  360 (385)
T TIGR01825       294 TRFFKAGLGKL--GYDT---GGSETPITPVVIG--------DEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPT  360 (385)
T ss_pred             HHHHHHHHHHc--CCCC---CCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEc
Confidence            88888888775  2222   1233445555431        112346688889999999853211     2368999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhh
Q 011669          459 LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.++++++++++++|++++++
T Consensus       361 ~~~~~e~i~~~~~~l~~~~~~  381 (385)
T TIGR01825       361 AEHTKDDLDQALDAYEKVGKE  381 (385)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999998865

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=100.00  E-value=5.3e-30  Score=261.72  Aligned_cols=348  Identities=19%  Similarity=0.194  Sum_probs=240.7

Q ss_pred             CeEEEeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhcccccc-----ccCChHHHHHHHHHHHhCC
Q 011669           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMP  155 (480)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~-----~~~~~~~~~l~e~L~~~~~  155 (480)
                      +..+++++|.++||.+|+.||||.+|.   .+|| ++|++.+++.+++.+..+...     .+..+...++++.+++.++
T Consensus        25 ~~~~~~~~~~~~~~~~g~~~i~l~~~~---~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g  101 (397)
T PRK06939         25 ERVITSPQGADITVADGKEVINFCANN---YLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG  101 (397)
T ss_pred             cccccCCCCceEEecCCCeEEEeeccC---ccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhC
Confidence            457789999999999999999998763   3577 689999999999877533211     2345677889999999986


Q ss_pred             CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCC
Q 011669          156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD  235 (480)
Q Consensus       156 ~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d  235 (480)
                      .+ +. +++++|++++..+++...  .+++.|++.++.|.+........ +            ...+.++.       .|
T Consensus       102 ~~-~~-i~~tsG~~a~~~~~~~l~--~~gd~vi~~~~~~~~~~~~~~~~-~------------~~~~~~~~-------~d  157 (397)
T PRK06939        102 TE-DA-ILYSSCFDANGGLFETLL--GKEDAIISDALNHASIIDGVRLC-K------------AKRYRYAN-------ND  157 (397)
T ss_pred             CC-cE-EEEcChHHHHHHHHHHhC--CCCCEEEEEhhhhHHHHHHHHhc-C------------CceEEeCC-------CC
Confidence            43 44 566667999999987653  36788999888887654433222 1            11111111       13


Q ss_pred             hHHHHHHHHHHHHccC--CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-Cc-cccCCCccccc
Q 011669          236 GEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFWGFE  311 (480)
Q Consensus       236 ~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gf-gr~G~~~~~~~  311 (480)
                          .+++++.++...  ..++++|+++++++++|...+    +++|.++|++||+++|+||+|. |+ ++.| .. ...
T Consensus       158 ----~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~-~~-~~~  227 (397)
T PRK06939        158 ----MADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENG-RG-TVE  227 (397)
T ss_pred             ----HHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCC-CC-HHH
Confidence                456666665321  226788999999998887554    9999999999999999999995 33 3333 11 122


Q ss_pred             ccCC--Cccee--eeccccccCccccccccCHHHHHhhcCCCccccC--CCcHHHHHHHHHHHHHhhh-hHHHHHHHHHH
Q 011669          312 AHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTF--GGNPVCTAAGHAVLKVIQK-DKLQNNAHVVG  384 (480)
Q Consensus       312 ~~~~--~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~--~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~  384 (480)
                      ..++  .+|++  ++||++++ +|+||+++++++++.+........+  ..++..++++.++++.+.+ +++.++++++.
T Consensus       228 ~~~~~~~~~i~~~S~sK~~~g-~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~  306 (397)
T PRK06939        228 HFGVMDRVDIITGTLGKALGG-ASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENA  306 (397)
T ss_pred             HcCCCCCCcEEEEECHHHhCc-cCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            2333  35666  89999964 5999999999998887653222222  2346667778888887654 35667777888


Q ss_pred             HHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCC
Q 011669          385 SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPL  459 (480)
Q Consensus       385 ~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~  459 (480)
                      +++++.|+++  .+.   ...+.+.++.+.+.        ......++.+.|+++||.+.+...     ..+++|+++++
T Consensus       307 ~~l~~~L~~~--~~~---~~~~~~~~~~~~~~--------~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~  373 (397)
T PRK06939        307 RYFREGMTAA--GFT---LGPGEHPIIPVMLG--------DAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSA  373 (397)
T ss_pred             HHHHHHHHHc--CCC---cCCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECC
Confidence            8888877665  121   12344555544431        122356788999999999875321     13589999998


Q ss_pred             CCCHHHHHHHHHHHHHHHhhC
Q 011669          460 CFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       460 ~~t~~~id~~l~~l~~~l~~~  480 (480)
                      .++++++++++++|+++++++
T Consensus       374 ~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        374 AHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh
Confidence            899999999999999988753

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.97  E-value=2.9e-29  Score=256.04  Aligned_cols=351  Identities=17%  Similarity=0.183  Sum_probs=242.5

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCC-CHHHHHHHHHHHHhccc--cccc---cCChHHHHHHHHHHH
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQH--STVL---YLNHAIADFAEALAS  152 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~--~~~~---~~~~~~~~l~e~L~~  152 (480)
                      ++.|..+.++.|.++++.+|++||||.+|.   .+|++ +|+|++++.+++.+...  ....   +..+...+++++|++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~---~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~   94 (393)
T TIGR01822        18 FKSERIITSPQGADIRVADGREVLNFCANN---YLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAA   94 (393)
T ss_pred             CCcccccccCCCceEEecCCceEEEeeCCC---ccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHH
Confidence            345677888999999999999999999884   35666 89999999999987422  2222   225567899999999


Q ss_pred             hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                      +++.  +.+++++||++|+..++....  .+++.|++.++.|++...+. ...+..         ++   .++       
T Consensus        95 ~~g~--~~~ii~~~~~~a~~~~~~~l~--~~gd~vi~~~~~~~s~~~~~-~~~~~~---------~~---~~~-------  150 (393)
T TIGR01822        95 FLGT--EDTILYASCFDANGGLFETLL--GAEDAIISDALNHASIIDGV-RLCKAK---------RY---RYA-------  150 (393)
T ss_pred             HhCC--CcEEEECchHHHHHHHHHHhC--CCCCEEEEeccccHHHHHHH-HhcCCc---------eE---EeC-------
Confidence            9965  456777999999998776542  36678888877776544332 221111         11   111       


Q ss_pred             CCChHHHHHHHHHHHHccC--CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCc-cc
Q 011669          233 GADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF-WG  309 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~-~~  309 (480)
                      ..|    .+++++.++...  ..++++|+++++++++|.+.+    +++|.++|++||+++|+||+|. +|..|... ..
T Consensus       151 ~~d----~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~-~g~~~~~~~~~  221 (393)
T TIGR01822       151 NND----MADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHA-TGFLGPTGRGS  221 (393)
T ss_pred             CCC----HHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCcc-ccCcCCCCCch
Confidence            023    466777776421  126789999999999998876    9999999999999999999994 44332110 11


Q ss_pred             ccccCC--Cccee--eeccccccCccccccccCHHHHHhhcCCCccccCC--CcHHHHHHHHHHHHHhhh-hHHHHHHHH
Q 011669          310 FEAHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGHAVLKVIQK-DKLQNNAHV  382 (480)
Q Consensus       310 ~~~~~~--~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~--~~~~~~aaa~a~L~~i~~-~~~~~~~~~  382 (480)
                      .+..++  .+|++  ++||+++ |+|+||+++++++++.+........++  .++..+++++++|+.++. ++..+++++
T Consensus       222 ~~~~~~~~~~di~~~s~sK~l~-g~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~  300 (393)
T TIGR01822       222 HELCGVMGRVDIITGTLGKALG-GASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWA  300 (393)
T ss_pred             HHhcCCCCCCeEEEEEChHHhh-CCCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            122333  35666  7899986 479999999999988776532222232  356667778888887644 456788888


Q ss_pred             HHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeC
Q 011669          383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITP  457 (480)
Q Consensus       383 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p  457 (480)
                      +.+++++.|+++  .+..   ..+.+.++.+.+.        .......+.+.|.++||++.....     ....+||++
T Consensus       301 ~~~~l~~~L~~~--g~~~---~~~~~~~~~i~~~--------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~  367 (393)
T TIGR01822       301 NTRYFRERMEAA--GFDI---KPADHPIIPVMLY--------DAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQI  367 (393)
T ss_pred             HHHHHHHHHHHc--CCCC---CCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEE
Confidence            888888888764  2221   1223445555442        122356788889999999863211     124699999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Q 011669          458 PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++.+|++||++++++|++++++
T Consensus       368 ~~~~t~edi~~~~~~l~~~~~~  389 (393)
T TIGR01822       368 SAAHTEEQLDRAVEAFTRIGRE  389 (393)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=6.9e-30  Score=257.94  Aligned_cols=344  Identities=17%  Similarity=0.165  Sum_probs=237.1

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-c-cccccCChHHHHHHHHHHHhCC--CCCC-EEEEeCCHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-H-STVLYLNHAIADFAEALASKMP--GNLK-VVFFTNSGTEANEL  173 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~-~~~~~~~~~~~~l~e~L~~~~~--~~~~-~v~f~~sGseA~~~  173 (480)
                      ..+||+..|.+..   ..++.+.+++.+++.... + +...+..+.+..+++++.+..+  .+.+ +|++|+|++||+..
T Consensus        28 ~~vi~l~iG~Pd~---~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~  104 (393)
T COG0436          28 EDVIDLSIGEPDF---PTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL  104 (393)
T ss_pred             CCEEEeCCCCCCC---CCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence            4789998888866   567889999999988763 2 2222333444444444444543  2233 49999999999999


Q ss_pred             HHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC-CCCCCChHHHHHHHHHHHHccCC
Q 011669          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGADGEMYAKDVQDLIDFGTS  252 (480)
Q Consensus       174 Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~d~~~~~~~le~~i~~~~~  252 (480)
                      ++.....  ++++||+++|+|..+........+             ..+.++.... ..|..|    .+++++.++   +
T Consensus       105 ~~~a~~~--pGDeVlip~P~Y~~y~~~~~~~gg-------------~~v~v~l~~~~~~f~~d----~~~l~~~i~---~  162 (393)
T COG0436         105 AFLALLN--PGDEVLIPDPGYPSYEAAVKLAGG-------------KPVPVPLDEEENGFKPD----LEDLEAAIT---P  162 (393)
T ss_pred             HHHHhcC--CCCEEEEeCCCCcCHHHHHHhcCC-------------EEEEEeCCcCccCCcCC----HHHHHhhcC---c
Confidence            9987665  788899999999776665555543             2222221111 244444    677888775   2


Q ss_pred             CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccC---CCcceeeeccccc-
Q 011669          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHG---VVPDIVTMAKGIG-  327 (480)
Q Consensus       253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~---~~pDivt~sK~~g-  327 (480)
                       ++++++++..+|++|.+ ++++++++|.++|++||+++|+||+|.+|.++|..+.. .+..+   ...-+.+|||.++ 
T Consensus       163 -ktk~i~ln~P~NPTGav-~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~m  240 (393)
T COG0436         163 -KTKAIILNSPNNPTGAV-YSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGM  240 (393)
T ss_pred             -cceEEEEeCCCCCcCcC-CCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccc
Confidence             78888888888888876 59999999999999999999999999999888731211 22222   2334558999999 


Q ss_pred             cCccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe-
Q 011669          328 NGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-  405 (480)
Q Consensus       328 ~G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-  405 (480)
                      .|||+||++++ +++++.+.......+++.+.++|.++.++|+.-++..+.+..++.-+..++.+.+...+.+.+.... 
T Consensus       241 tGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~  320 (393)
T COG0436         241 TGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKP  320 (393)
T ss_pred             cccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccC
Confidence            79999999999 8888887755566788999999999999998532222333333333333333333333344344444 


Q ss_pred             ccceeE-EEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcCC-----CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          406 GRGFLL-GVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFYG-----NVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       406 g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~-----~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ..|.|+ ++.+...        .....++..|+ +.||++.||..|+     +++||+  ++.+++++++++++|.+.++
T Consensus       321 p~Ga~Y~~~~i~~~--------~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis--~~~~~~~l~~a~~rl~~~~~  390 (393)
T COG0436         321 PEGAFYLFPKIPEL--------LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLS--LATSEETLEEALRRLARFLA  390 (393)
T ss_pred             CCeeEEEEeecCCC--------CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEE--EecCHHHHHHHHHHHHHHHH
Confidence            545554 5554321        12455666665 5689999986554     479999  78888999999999999876


Q ss_pred             h
Q 011669          479 K  479 (480)
Q Consensus       479 ~  479 (480)
                      .
T Consensus       391 ~  391 (393)
T COG0436         391 E  391 (393)
T ss_pred             h
Confidence            4

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.97  E-value=4.1e-29  Score=253.59  Aligned_cols=328  Identities=15%  Similarity=0.146  Sum_probs=230.0

Q ss_pred             CCHHHHHHHHHHHHhcccc---cc-cc-CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEE
Q 011669          116 CHPYVVDSIVNQIKRIQHS---TV-LY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL  190 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~---~~-~~-~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~  190 (480)
                      .||++++++.+++++.+..   +. .| ......+|+++++++++.  +..++++||+.|+..++...  ..+++.|++.
T Consensus        13 ~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~--e~al~~~sG~~a~~~~i~~l--~~~GD~Vl~~   88 (392)
T PLN03227         13 SSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT--ESAILYSDGASTTSSTVAAF--AKRGDLLVVD   88 (392)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHHHHh--CCCCCEEEEe
Confidence            5899999999999874321   11 12 256778999999999965  35678899988998888764  3366778877


Q ss_pred             cCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc----------CCCceEEEEE
Q 011669          191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG----------TSGHVAGFLS  260 (480)
Q Consensus       191 ~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~----------~~~~~a~vi~  260 (480)
                      ++.|.+. ...+.+...          .+..+..         +|    .+++++.++..          ...++..|++
T Consensus        89 ~~~h~s~-~~~~~l~~~----------~~~~~~~---------~d----~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~  144 (392)
T PLN03227         89 RGVNEAL-LVGVSLSRA----------NVRWFRH---------ND----MKDLRRVLEQVRAQDVALKRKPTDQRRFLVV  144 (392)
T ss_pred             ccccHHH-HHHHHHcCC----------eEEEeCC---------CC----HHHHHHHHHHhhhhccccccccCCCcEEEEE
Confidence            7776543 222222211          1111111         12    22333322211          1135789999


Q ss_pred             cccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc--CccccCCCcccccccCCCc----ceeeeccccccCccccc
Q 011669          261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA--GFARTGSHFWGFEAHGVVP----DIVTMAKGIGNGIPLGA  334 (480)
Q Consensus       261 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t--gfgr~G~~~~~~~~~~~~p----Divt~sK~~g~G~pig~  334 (480)
                      ||+++++|.+.+    +++|+++|++||+++|+||+|+  .+|++| . +..+++|+.|    |++++|++-+.|.+.|+
T Consensus       145 E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G-~-g~~~~~g~~p~~~~Div~~slsk~~g~~gg~  218 (392)
T PLN03227        145 EGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSG-R-GSLEHAGLKPMVHAEIVTFSLENAFGSVGGM  218 (392)
T ss_pred             cCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCC-C-cHHHHcCCCCCCCceEEEeechhhhhccCcE
Confidence            999999999987    9999999999999999999997  334555 2 4678889988    99987744444556678


Q ss_pred             cccCHHHHHhhcCCCccccCCCc--HHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc----
Q 011669          335 VVTTPEIAEVLTRRNYFNTFGGN--PVCTAAGHAVLKV-IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR----  407 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~~~t~~~~--~~~~aaa~a~L~~-i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~----  407 (480)
                      +++++++++.+....+..+|+++  |+.+++++++++. ++++++.+++++++++++++|++  ..++.+.++|+.    
T Consensus       219 v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~--~~~~~~~~~rg~~~~~  296 (392)
T PLN03227        219 TVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN--SSHPYALKLRNRLVIT  296 (392)
T ss_pred             EecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh--cCCccccccccccccC
Confidence            88999998877655566788876  8778888877754 45668899999999999999987  356777777763    


Q ss_pred             ----ceeEEEEEecCCCcCCC-CHHHHHHHHHHHHHcCceeeccCc---------CCCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          408 ----GFLLGVEFVTDRQLKTP-AKAETLYIMDKMKEMGVLVGKGGF---------YGNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       408 ----g~~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~Gv~v~~~~~---------~~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                          |+++++++.+++.+..+ .......+.+.|+++|+++.+.+.         ....+|++....+|++|||+++++|
T Consensus       297 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l  376 (392)
T PLN03227        297 SDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVL  376 (392)
T ss_pred             CCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence                55788888432211100 011235788999999999864321         1246788888889999999999999


Q ss_pred             HHHHhh
Q 011669          474 DYSLSK  479 (480)
Q Consensus       474 ~~~l~~  479 (480)
                      ++++++
T Consensus       377 ~~~~~~  382 (392)
T PLN03227        377 GEAVEA  382 (392)
T ss_pred             HHHHHH
Confidence            998865

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.97  E-value=1.3e-28  Score=247.97  Aligned_cols=338  Identities=18%  Similarity=0.189  Sum_probs=232.3

Q ss_pred             EEeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhcccccc-----ccCChHHHHHHHHHHHhCCCCC
Q 011669           85 VVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNL  158 (480)
Q Consensus        85 ~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~-----~~~~~~~~~l~e~L~~~~~~~~  158 (480)
                      +.++.|.++. .+|++||||.+|   .++|| +||+|++++.+++.+..+...     ....+...++++.|+++++.  
T Consensus         3 ~~~~~~~~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~--   76 (360)
T TIGR00858         3 LDRGPGPEVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT--   76 (360)
T ss_pred             cccCCCCeEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC--
Confidence            3577899996 899999999998   36895 789999999999987432211     12346788899999999863  


Q ss_pred             CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHH
Q 011669          159 KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM  238 (480)
Q Consensus       159 ~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~  238 (480)
                      +..+++++|++++..+++.+.  .+++.|++.++.|... .......+            .....++.       .|   
T Consensus        77 ~~~i~~~~G~~~~~~~l~~~~--~~gd~v~~~~~~~~~~-~~~~~~~g------------~~~~~~~~-------~d---  131 (360)
T TIGR00858        77 EAALLFSSGYLANVGVISALV--GKGDLILSDALNHASL-IDGCRLSG------------ARVRRYRH-------ND---  131 (360)
T ss_pred             CCEEEECchHHHHHHHHHHhC--CCCCEEEEEccccHHH-HHHHHhcC------------CceEEecC-------CC---
Confidence            335666778999988877543  3566777776665433 32222221            11111111       12   


Q ss_pred             HHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC-cccccccCCCc
Q 011669          239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-FWGFEAHGVVP  317 (480)
Q Consensus       239 ~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~-~~~~~~~~~~p  317 (480)
                       .+++++.++.....++++++++++++++|...+    +++|.++|++||+++|+||+|+ +|..+.. .......++.+
T Consensus       132 -~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~  205 (360)
T TIGR00858       132 -VEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKP  205 (360)
T ss_pred             -HHHHHHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCc
Confidence             467777776432135789999999988887766    9999999999999999999997 3332211 11122334433


Q ss_pred             c-----eeeeccccccCccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Q 011669          318 D-----IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKE  389 (480)
Q Consensus       318 D-----ivt~sK~~g~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~  389 (480)
                      +     +.+|||++++  +.||+++++++++.+....  +..+.+.++..++++.++++.+.. ++..++++++.+++.+
T Consensus       206 ~~~~i~i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~  283 (360)
T TIGR00858       206 EPVDIQVGTLSKALGS--YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRA  283 (360)
T ss_pred             cCCcEEEEechhhhhc--cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            3     5589999985  2389999999888775322  223344667778888888987654 3567788888888888


Q ss_pred             HHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCCCCCHH
Q 011669          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPLCFTKE  464 (480)
Q Consensus       390 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~~  464 (480)
                      .|+++    +. ......|.++++.+..        ......+.+.|+++||++.++..     ..+++||+++..++++
T Consensus       284 ~L~~~----~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~  350 (360)
T TIGR00858       284 GLEAL----GF-TLMPSCTPIVPVIIGD--------NASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPG  350 (360)
T ss_pred             HHHHc----CC-ccCCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHH
Confidence            88764    21 1223457788877621        22356788999999999976422     1358999999999999


Q ss_pred             HHHHHHHHHH
Q 011669          465 DADYLVDVMD  474 (480)
Q Consensus       465 ~id~~l~~l~  474 (480)
                      |+++++++|+
T Consensus       351 ~i~~~l~~l~  360 (360)
T TIGR00858       351 DIDRLAEALK  360 (360)
T ss_pred             HHHHHHHhhC
Confidence            9999999874

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.97  E-value=3.5e-28  Score=249.24  Aligned_cols=333  Identities=19%  Similarity=0.196  Sum_probs=229.0

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc----ccc-CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST----VLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~----~~~-~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~  171 (480)
                      +|+++++|.++.. +.|| +||+|++|+.+++++..+..    ..+ .++...+|+++|+++++.  +..++++||++||
T Consensus        44 ~~~~~~~~~sn~y-l~l~-~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~--~~~i~~~sG~~a~  119 (410)
T PRK13392         44 GPRRVTIWCSNDY-LGMG-QHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK--ESALLFTSGYVSN  119 (410)
T ss_pred             CCceEEEEECCCc-cCCC-CCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC--CCEEEECcHHHHH
Confidence            5788999887544 3344 58999999999998864321    122 234678999999999974  4567888899999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      +.+|+......++ ++|+.+..+|+.....+...+..          +..+  +.       +|    .+++++.++...
T Consensus       120 ~~~i~~l~~~~~g-~~vi~~~~~h~s~~~~~~~~g~~----------~~~~--~~-------~d----~~~l~~~l~~~~  175 (410)
T PRK13392        120 DAALSTLGKLLPG-CVILSDALNHASMIEGIRRSGAE----------KQVF--RH-------ND----LADLEEQLASVD  175 (410)
T ss_pred             HHHHHHHhcCCCC-CEEEEehhhhHHHHHHHHHcCCe----------EEEE--eC-------CC----HHHHHHHHHhcc
Confidence            9999854221233 45666667888765544433321          1111  11       22    345556665433


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-Cc-cccCCCcccccccCC--Cccee--eeccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFWGFEAHGV--VPDIV--TMAKG  325 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gf-gr~G~~~~~~~~~~~--~pDiv--t~sK~  325 (480)
                      .+++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ |+ |..| ..+ .+..++  .+|++  ||||+
T Consensus       176 ~~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g-~g~-~~~~~~~~~~div~~tlsK~  249 (410)
T PRK13392        176 PDRPKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARG-GGI-AERDGLMDRIDMIQGTLAKA  249 (410)
T ss_pred             CCCCEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCC-Cch-hhhccCCCCCcEEEEEChHh
Confidence            347889999999999998876    9999999999999999999998 43 5554 222 233333  35666  89999


Q ss_pred             ccc-CccccccccCHHHHHhhcCCCc--cccCCCcHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669          326 IGN-GIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQKD-KLQNNAHVVGSYLKERLTALKDKYGII  401 (480)
Q Consensus       326 ~g~-G~pig~v~~~~~~~~~l~~~~~--~~t~~~~~~~~aaa~a~L~~i~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~  401 (480)
                      +|. |   ||+++++++++.+.....  ..+.+.+|++++++.++|+.++.. ...+++++..+++++.|+++  .+.  
T Consensus       250 ~g~~G---G~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~--  322 (410)
T PRK13392        250 FGCLG---GYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN--GIP--  322 (410)
T ss_pred             hhccc---chhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCC--
Confidence            983 4   789999999887654332  235556788899999999877543 33455667777777777664  222  


Q ss_pred             eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCc-----CCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGF-----YGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       402 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-----~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                       ...+.+.++.+.+.        ......++.+.|+ ++||++.+...     ...++||++++.+|++|+|.++++|++
T Consensus       323 -~~~~~~~~~~i~~~--------~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~  393 (410)
T PRK13392        323 -VMPSPSHIVPVMVG--------DPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVA  393 (410)
T ss_pred             -CCCCCCCEEEEEeC--------CHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence             12345555555441        1223567888886 68999986421     236899999999999999999999999


Q ss_pred             HHhh
Q 011669          476 SLSK  479 (480)
Q Consensus       476 ~l~~  479 (480)
                      ++++
T Consensus       394 ~~~~  397 (410)
T PRK13392        394 IWDR  397 (410)
T ss_pred             HHHH
Confidence            8765

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=1.6e-27  Score=240.99  Aligned_cols=326  Identities=18%  Similarity=0.188  Sum_probs=222.6

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC------CCCCCEEEEeCCHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM------PGNLKVVFFTNSGTEANEL  173 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~------~~~~~~v~f~~sGseA~~~  173 (480)
                      ..+|+..|....   ..+|.+.+++.+.+.........|+.....+|++.+++++      +.+.++|++|+|++|++..
T Consensus        27 ~~i~l~~~~~~~---~~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~  103 (368)
T PRK03317         27 VPVRLNTNENPY---PPSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ  103 (368)
T ss_pred             ceeEecCCCCCC---CCCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence            468888776543   3678999999988764322223455555667777777776      4456789999999999999


Q ss_pred             HHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       174 Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      +++....  +++.|++..++|+++...+...             |+..++++.  ...|+.|    .++++++++.   .
T Consensus       104 ~~~~~~~--~gd~v~v~~P~y~~~~~~~~~~-------------g~~~~~~~~--~~~~~~d----~~~l~~~~~~---~  159 (368)
T PRK03317        104 LLQAFGG--PGRTALGFVPSYSMHPIIARGT-------------HTEWVEGPR--AADFTLD----VDAAVAAIAE---H  159 (368)
T ss_pred             HHHHhcC--CCCEEEEeCCChHHHHHHHHhc-------------CCeeEEccc--CCCCCCC----HHHHHHHHhc---c
Confidence            9987643  6788999999998866543321             333333322  1123333    5677777753   2


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee---eeccccc-cC
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NG  329 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv---t~sK~~g-~G  329 (480)
                      +++++++...+|++|.+.+    .+++.++|+.+++++|+||+|++|++.| ........+..|+++   ||||.+| +|
T Consensus       160 ~~~~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~-~~~~~~~~~~~~~~i~~~SfSK~~g~~G  234 (368)
T PRK03317        160 RPDVVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSG-TPSALTLLPEYPRLVVSRTMSKAFAFAG  234 (368)
T ss_pred             CCCEEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccC-CcCHHHHHHhCCCEEEEEechhhhccch
Confidence            4455555666788888876    7778888888899999999999997766 333333334456666   8999998 79


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccce
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF  409 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  409 (480)
                      +|+||+++++++++.+....  .+++.++++++++.++|+..  +.+.++.+++.+ .++.+.+...+++. ....+.|.
T Consensus       235 lRiG~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~--~~~~~~~~~~~~-~~~~l~~~L~~~g~-~~~~~~~~  308 (368)
T PRK03317        235 GRLGYLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHA--DELLASVAALRA-ERDRVVAWLRELGL-RVAPSDAN  308 (368)
T ss_pred             hhhhhhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCH--HHHHHHHHHHHH-HHHHHHHHHHHCCC-EeCCCCCc
Confidence            99999999999998887543  46788999999999988742  334444433322 23333333333442 22344455


Q ss_pred             eEEE-EEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          410 LLGV-EFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       410 ~~~i-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ++.+ .+ .          ....+.+.|+++||++.+.+. .+++||+.   .+.++++.++++|+++++
T Consensus       309 ~~~~~~~-~----------~~~~~~~~l~~~Gv~v~~~~~-~~~iRi~~---~~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        309 FVLFGRF-A----------DRHAVWQGLLDRGVLIRDVGI-PGWLRVTI---GTPEENDAFLAALAEVLA  363 (368)
T ss_pred             EEEEecc-C----------CHHHHHHHHHHCCEEEEeCCC-CCeEEEec---CCHHHHHHHHHHHHHHHH
Confidence            4433 32 1          145688889999999987643 57899993   478899999999998875

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2.1e-27  Score=241.22  Aligned_cols=340  Identities=14%  Similarity=0.132  Sum_probs=230.6

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Al  175 (480)
                      .+..+||+..+...  + +.+|.+.+++.+.+....  ...|. .....+++++++++++.+.++|++++|+++|+..++
T Consensus        26 ~~~~~i~l~~~~~~--~-~~~~~~~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~  100 (380)
T PRK06225         26 KDKEMIWMGQNTNH--L-GPHEEVREAMIRCIEEGE--YCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVM  100 (380)
T ss_pred             hcCCeEEccCCCCC--C-CCCHHHHHHHHHHHhcCC--CCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHH
Confidence            34568888776543  3 468999999999887532  12233 335788999999999877788999999999999999


Q ss_pred             HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC-cCCCCCCChHHHHHHHHHHHHccCCCc
Q 011669          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFGADGEMYAKDVQDLIDFGTSGH  254 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (480)
                      +.+..  +++.|++.+++|+....... ..            |...+++|.. ..+.|..|    .+++++.+.    ++
T Consensus       101 ~~~~~--~gd~vl~~~p~y~~~~~~~~-~~------------g~~~~~v~~~~~~~~~~~d----~~~l~~~~~----~~  157 (380)
T PRK06225        101 RAFLS--PGDNAVTPDPGYLIIDNFAS-RF------------GAEVIEVPIYSEECNYKLT----PELVKENMD----EN  157 (380)
T ss_pred             HHhcC--CCCEEEEcCCCCcchHHHHH-Hh------------CceEEeeccccccCCccCC----HHHHHhhcC----CC
Confidence            87543  56789999999875432221 11            2333333311 11122223    456666664    24


Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc-cCCCcceeeeccccc-cCccc
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA-HGVVPDIVTMAKGIG-NGIPL  332 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~-~~~~pDivt~sK~~g-~G~pi  332 (480)
                      ++++++...++++|.+. +.+.+++|.++|++||+++|+||+|.+|.. + ....... .+...++.+|||.+| +|+|+
T Consensus       158 ~~~v~l~~p~NptG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~-~~~~~~~~~~~~i~~~s~SK~~g~~G~Ri  234 (380)
T PRK06225        158 TRLIYLIDPLNPLGSSY-TEEEIKEFAEIARDNDAFLLHDCTYRDFAR-E-HTLAAEYAPEHTVTSYSFSKIFGMAGLRI  234 (380)
T ss_pred             ceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHCCcEEEEehhHHHHhc-c-CCchhhcCCCCEEEEeechhhcCCcccee
Confidence            66665444466777664 778899999999999999999999987743 2 1111111 123445668999998 79999


Q ss_pred             cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCc--eeeEecccee
Q 011669          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI--IGDVRGRGFL  410 (480)
Q Consensus       333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~--~~~v~g~g~~  410 (480)
                      ||+++++++++.+.... ..+++.|.++++++.++|+.  .+.+.+++++..+..++.+.+..++++.  +...+..|.+
T Consensus       235 G~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  311 (380)
T PRK06225        235 GAVVATPDLIEVVKSIV-INDLGTNVIAQEAAIAGLKV--KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNM  311 (380)
T ss_pred             EEEecCHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeE
Confidence            99999999988776532 35677888998888888763  2445556655555555555554444322  2234556888


Q ss_pred             EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +|+++....       .....+.+.|.++||.+.++..     ..+++|++  +..+++++++++++|++++++
T Consensus       312 ~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s--~~~~~e~l~~~~~~l~~~~~~  376 (380)
T PRK06225        312 MVIDISEAG-------IDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVS--FSIPREQVEVFCEEFPDVVET  376 (380)
T ss_pred             EEEEccccc-------CCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEE--eCCCHHHHHHHHHHHHHHHHH
Confidence            888874321       1245688888899999988632     23589999  456899999999999998865

>PRK07324 transaminase; Validated

Probab=99.96  E-value=1.8e-27  Score=240.78  Aligned_cols=343  Identities=15%  Similarity=0.112  Sum_probs=232.0

Q ss_pred             EeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC-CCCCEEEEeCCHHHHHH
Q 011669           94 FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP-GNLKVVFFTNSGTEANE  172 (480)
Q Consensus        94 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~-~~~~~v~f~~sGseA~~  172 (480)
                      ++..|..++++..|-...   -.++.+ +|+.+++.....  .........+|++.+++++. .+.++|++|+|+++|+.
T Consensus        21 ~~~~~~~~~~~~~~e~~~---~~~~~~-~~~~~~~~~~~~--~Y~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~   94 (373)
T PRK07324         21 YDIAESCIDSLTLEELLA---LAGKNP-EAFYQELGQKKL--TYGWIEGSPEFKEAVASLYQNVKPENILQTNGATGANF   94 (373)
T ss_pred             cccccCCCCCCcHHHHHh---ccCcch-HHHHHHHhcCCc--cCCCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHH
Confidence            466677777777665543   245567 888877765322  11123456788888888774 35678999999999999


Q ss_pred             HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (480)
Q Consensus       173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (480)
                      .++.....  +++.|++..++|..........             |+..+.+|......|..|    .+++++.+.    
T Consensus        95 ~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~~~d----~~~l~~~~~----  151 (373)
T PRK07324         95 LVLYALVE--PGDHVISVYPTYQQLYDIPESL-------------GAEVDYWQLKEENGWLPD----LDELRRLVR----  151 (373)
T ss_pred             HHHHHhCC--CCCEEEEcCCCchhHHHHHHHc-------------CCEEEEEecccccCCCCC----HHHHHHhCC----
Confidence            99986643  6788999999987654332222             233333332221223223    466666653    


Q ss_pred             CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccCCCcceeeeccccc-cCc
Q 011669          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGI  330 (480)
Q Consensus       253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~~~pDivt~sK~~g-~G~  330 (480)
                      .++++|++...+|++|.+. +++.+++|.++|++||+++|+||+|.++...+ ..... +..+....+.+|||.+| .|+
T Consensus       152 ~~~kli~i~~p~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~-~~~s~~~~~~~~I~~~s~SK~~~~~G~  229 (373)
T PRK07324        152 PNTKLICINNANNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG-STPSIADLYEKGISTNSMSKTYSLPGI  229 (373)
T ss_pred             CCCcEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCC-CCCChhhccCCEEEEecchhhcCCccc
Confidence            2567777777778888764 88889999999999999999999999886654 22211 12222233458999999 799


Q ss_pred             cccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccc-e
Q 011669          331 PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG-F  409 (480)
Q Consensus       331 pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g-~  409 (480)
                      |+||+++++++++.+.......+++.+++++.++..+|+.  .+.+.++.++..+..++.+.+..++++.+..+.+.| .
T Consensus       230 RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~--~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~  307 (373)
T PRK07324        230 RVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEH--RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVS  307 (373)
T ss_pred             eeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceE
Confidence            9999999999998887766667788888998888887752  234455555544444555555555555444455554 4


Q ss_pred             eEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          410 LLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.++.+...        ....++++.| .+.||++.||..|  .+++||+  +..+++.+.+++++|.+++++
T Consensus       308 ~~~i~~~~~--------~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis--~~~~~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        308 TSFVKLDVD--------MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG--YCCDTETLKKGLKKLSEFLRE  370 (373)
T ss_pred             EEEEEeCCC--------CCHHHHHHHHHHhcCEEEECccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence            556665321        1135567765 4779999998654  3689999  556899999999999998864

>PRK07682 hypothetical protein; Validated

Probab=99.96  E-value=5.2e-27  Score=238.14  Aligned_cols=338  Identities=12%  Similarity=0.112  Sum_probs=216.9

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccCChHHHHHHHHHHHhCC--CCCC-EEEEeCCHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMP--GNLK-VVFFTNSGTEANELA  174 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~l~e~L~~~~~--~~~~-~v~f~~sGseA~~~A  174 (480)
                      ..|+|..|.+..  + .++.+.+++.+.+....  +....+..+...++++.+.+.++  .+.+ +|++|+|+++|++.+
T Consensus        21 ~~i~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~   97 (378)
T PRK07682         21 GVISLGVGEPDF--V-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVA   97 (378)
T ss_pred             CeEEeCCCCCCC--C-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence            368887777653  3 46678888888776421  11112223444555555554433  2333 799999999999999


Q ss_pred             HHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCc
Q 011669          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (480)
Q Consensus       175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (480)
                      ++....  +++.|++.+++|+++........             ...+.++......|+.|    .+++++++.    ++
T Consensus        98 ~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~~~----~~  154 (378)
T PRK07682         98 MRAIIN--PGDEVLIVEPSFVSYAPLVTLAG-------------GVPVPVATTLENEFKVQ----PAQIEAAIT----AK  154 (378)
T ss_pred             HHHhCC--CCCEEEEeCCCchhhHHHHHHcC-------------CEEEEeecCCccCCCCC----HHHHHhhcC----cc
Confidence            886643  67899999999986554333222             22222221111122223    567777664    24


Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccC---CCcceeeeccccc-cC
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHG---VVPDIVTMAKGIG-NG  329 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~---~~pDivt~sK~~g-~G  329 (480)
                      ++++++...+|++|.+ .+++.+++|.++|++||+++|+||+|.+|.+.+ .+.++ ...+   ....+.+|||.++ .|
T Consensus       155 ~~~v~~~~p~NPtG~~-~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~~~~G  232 (378)
T PRK07682        155 TKAILLCSPNNPTGAV-LNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE-AYTSFASIKGMRERTILISGFSKGFAMTG  232 (378)
T ss_pred             cEEEEEECCCCCcCcC-cCHHHHHHHHHHHHHcCcEEEEehhhhhcccCC-CCCChhhcccccCCEEEEecCcccccChh
Confidence            5666555557778875 478889999999999999999999999887655 22221 1112   2223558999999 79


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec-
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG-  406 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-  406 (480)
                      +|+||+++++++++.+.......+++.+++++.++.++|+....  +...+++++..+.+.+.|++    ++. ....+ 
T Consensus       233 lR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~-~~~~p~  307 (378)
T PRK07682        233 WRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNE----IGL-TCHVPG  307 (378)
T ss_pred             hhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----CCC-ccCCCC
Confidence            99999999999998886544445667888999888888863211  12233344444444444444    332 22233 


Q ss_pred             cceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       407 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .|+++|+.+....       .....+.+.|+ ++||.+.+|..+    .+++||+.  ..+++++++++++|++++++
T Consensus       308 g~~~~~~~~~~~~-------~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~--~~~~~~l~~~l~~l~~~l~~  376 (378)
T PRK07682        308 GAFYAFPSISSTG-------LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSY--ATSLEQLQEAMKRMKRFVEN  376 (378)
T ss_pred             eeEEEEEeccCCC-------CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHhh
Confidence            3556676653211       11355777765 789999987433    47899995  45799999999999999875

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.96  E-value=1.5e-26  Score=229.19  Aligned_cols=338  Identities=20%  Similarity=0.269  Sum_probs=249.8

Q ss_pred             EeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhccccc-----cccCChHHHHHHHHHHHhCCCCCC
Q 011669           86 VDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST-----VLYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        86 ~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~-----~~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      .+..+.++ -.+|++++||+++.+   ||- .||++++|+.+++++.+...     ..+.++...+|.++|+++++  .+
T Consensus        27 ~~~~~~~~-~~~~~~~~nf~SNdY---LGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g--~e  100 (388)
T COG0156          27 DRRQGLAI-RADGRKVLNFCSNDY---LGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG--AE  100 (388)
T ss_pred             cccCCcce-ecCCceeEeeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC--CC
Confidence            33334444 355999999998875   344 48999999999999853221     14567889999999999994  56


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHH
Q 011669          160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY  239 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~  239 (480)
                      ..++.+||..||..++-...   +++++|+.+--.|........++......+.+                   +|    
T Consensus       101 ~al~f~SGy~AN~~~i~~l~---~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------------------nD----  154 (388)
T COG0156         101 AALLFSSGFVANLGLLSALL---KKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------------------ND----  154 (388)
T ss_pred             cEEEEcccchhHHHHHHHhc---CCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------------------CC----
Confidence            78899999999999998544   56889999999999888777776654433332                   35    


Q ss_pred             HHHHHHHHHccCCC--ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccCCC
Q 011669          240 AKDVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVV  316 (480)
Q Consensus       240 ~~~le~~i~~~~~~--~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~~~  316 (480)
                      +++||+.++.....  +...|++|.+.++.|.+.|    |++|.+||+|||+++++||+|+ +|-.|+..-+ .++.|+.
T Consensus       155 ~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~G~~GrG~~e~~g~~  229 (388)
T COG0156         155 LDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVLGPNGRGLAEHFGLE  229 (388)
T ss_pred             HHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-ccccCCCCccHHHHhCCC
Confidence            67888888752111  5789999999999999998    9999999999999999999996 6555532222 3566665


Q ss_pred             cc---e--eeecccccc-CccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHH
Q 011669          317 PD---I--VTMAKGIGN-GIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKD-KLQNNAHVVGSYL  387 (480)
Q Consensus       317 pD---i--vt~sK~~g~-G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~~-~~~~~~~~~~~~l  387 (480)
                      ++   |  .||||++|+ |   |++.++..+.+.+....  +..+-+.+|..++++.++|+++++. +..++++++..++
T Consensus       230 ~~~vdi~~gTlsKAlGs~G---g~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~  306 (388)
T COG0156         230 PEEVDIIVGTLGKALGSSG---GYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFF  306 (388)
T ss_pred             CccceEEEEEchhhhcccC---ceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            33   3  389999993 5   67999999999887643  3355567788889999999998864 6778888888888


Q ss_pred             HHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCCCCC
Q 011669          388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPLCFT  462 (480)
Q Consensus       388 ~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t  462 (480)
                      ++.+...    ++.. ......++.+.+.        +...+..+...|+++||++.+..+     ....+|++++..+|
T Consensus       307 ~~~~~~~----~~~~-~~s~s~I~pv~~g--------d~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht  373 (388)
T COG0156         307 RSLLKAL----GLVL-LPSESPIIPVILG--------DEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHT  373 (388)
T ss_pred             HHHHHhc----CCcc-CCCCCCeeeeEeC--------CHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCC
Confidence            8555443    1111 1222223334332        234577888899999999975421     23689999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 011669          463 KEDADYLVDVMDYS  476 (480)
Q Consensus       463 ~~~id~~l~~l~~~  476 (480)
                      ++||+.++++|.++
T Consensus       374 ~~~I~~l~~~l~~~  387 (388)
T COG0156         374 EEDIDRLAEALSEV  387 (388)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999875

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=5.1e-27  Score=236.55  Aligned_cols=323  Identities=15%  Similarity=0.130  Sum_probs=221.1

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar  179 (480)
                      .++||.+|...  +| .+|.|.+++.+++....    .|+.....++++.+++++..+.++|++++|+++++..+++...
T Consensus        30 ~~i~l~~n~~~--~~-~~~~v~~a~~~~~~~~~----~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~  102 (359)
T PRK03158         30 KIVKLASNENP--YG-PSPKVKEAIAAHLDELA----LYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL  102 (359)
T ss_pred             ceEEecCCCCC--CC-CCHHHHHHHHHHHHHhh----cCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh
Confidence            68999888765  56 47899999998876542    3445567889999999987667889999999999998877553


Q ss_pred             hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEE
Q 011669          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (480)
Q Consensus       180 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi  259 (480)
                      .  +++.|++.+++|+++...+...             |.....+|..   .++.|    .+++++.++    +++++++
T Consensus       103 ~--~gd~v~~~~p~y~~~~~~~~~~-------------g~~~~~~~~~---~~~~d----~~~l~~~~~----~~~~~v~  156 (359)
T PRK03158        103 N--PGTNTVMAEPTFSQYRHNAIIE-------------GAEVREVPLK---DGGHD----LEAMLKAID----EQTKIVW  156 (359)
T ss_pred             C--CCCEEEEcCCCHHHHHHHHHHc-------------CCeEEEEecC---CCCcC----HHHHHHhcC----CCCCEEE
Confidence            3  6788999999998765443222             2222222221   12223    456666553    2566677


Q ss_pred             EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc---ccccCCCcceeeeccccc-cCcccccc
Q 011669          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG---FEAHGVVPDIVTMAKGIG-NGIPLGAV  335 (480)
Q Consensus       260 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~---~~~~~~~pDivt~sK~~g-~G~pig~v  335 (480)
                      +...+|++|.+.+ .+.+.++.+.|+ +|+++|+||+|..|...+.....   .+..+...-+.||||.+| .|+|+||+
T Consensus       157 i~~p~NPtG~~~~-~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~  234 (359)
T PRK03158        157 ICNPNNPTGTYVN-HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYG  234 (359)
T ss_pred             EeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehh
Confidence            6666888898865 334444444442 69999999999877443311111   111222223348999999 79999999


Q ss_pred             ccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEE
Q 011669          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF  415 (480)
Q Consensus       336 ~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~  415 (480)
                      ++++++++.+....  .+++.|++++.++.++|+   +.++.+++++..+..++.+.+..++++ +...++.|+++|+++
T Consensus       235 v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~g~~i~~~~  308 (359)
T PRK03158        235 IASEELIEKLNIAR--PPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCKEYG-LFYYPSQTNFIFVDT  308 (359)
T ss_pred             cCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeCCCcCcEEEEEC
Confidence            99999998876543  357889999999998885   344555555544455555555444543 334566788888876


Q ss_pred             ecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          416 VTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ..          ....+.+.|+++||++.++..+  .+++||+   ..+.+++++++++|+++
T Consensus       309 ~~----------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~  358 (359)
T PRK03158        309 GR----------DANELFEALLKKGYIVRSGAALGFPTGVRIT---IGLKEQNDKIIELLKEL  358 (359)
T ss_pred             CC----------CHHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHHHHHHh
Confidence            21          1356888888999999997544  4789999   34899999999999875

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.96  E-value=2.4e-26  Score=232.65  Aligned_cols=332  Identities=15%  Similarity=0.075  Sum_probs=231.6

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~  171 (480)
                      .++++|||+++.+.. |+ .||+|++++.+.+++.+....     .+.+....+|.++|+++++  .+.+++++||..||
T Consensus       100 ~~r~~l~FsSndYLG-L~-~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g--~e~all~sSGy~AN  175 (476)
T PLN02955        100 RFKKLLLFSGNDYLG-LS-SHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK--KEDCLVCPTGFAAN  175 (476)
T ss_pred             CCceEEEeeccCccC-CC-CCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC--CCcEEEECChHHHH
Confidence            457899998775532 32 589999999999998754321     2345677889999999994  46789999999999


Q ss_pred             HHHHHHHHh-----------hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHH
Q 011669          172 ELAIMMARL-----------YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA  240 (480)
Q Consensus       172 ~~Alk~ar~-----------~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~  240 (480)
                      ..+|.....           ..+++.+|+.+...|......+.+....        .++....++.       +|    +
T Consensus       176 ~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~--------~~a~~~~f~H-------ND----~  236 (476)
T PLN02955        176 MAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQ--------GNVEVFVYRH-------CD----M  236 (476)
T ss_pred             HHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhcccc--------CCceEEEeCC-------CC----H
Confidence            999986421           0245668888999998877776554210        0111221111       45    6


Q ss_pred             HHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC-cccccccCCCcce
Q 011669          241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-FWGFEAHGVVPDI  319 (480)
Q Consensus       241 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~-~~~~~~~~~~pDi  319 (480)
                      ++|+++++... ++.++|++|++.++.|.+.|    |++|.++|++||++||+||+|+ +|..|.. ....+++++.+|+
T Consensus       237 ~~Le~~L~~~~-~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e~~g~~~di  310 (476)
T PLN02955        237 YHLNSLLSSCK-MKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHG-TFVCGENGGGVAEEFNCEADV  310 (476)
T ss_pred             HHHHHHHHhCC-CCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEccccc-CceecCCCCcHHHHhCCCCCC
Confidence            78888887543 35689999999999999887    9999999999999999999997 4344421 1224566776665


Q ss_pred             ----eeeccccccCccccccccCHHHHHhhcCCCccccC--CCcHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH
Q 011669          320 ----VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTF--GGNPVCTAAGHAVLKVIQKD-KLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       320 ----vt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~--~~~~~~~aaa~a~L~~i~~~-~~~~~~~~~~~~l~~~L~  392 (480)
                          .||||++|.  +-|++++++++++.+........|  +.+|..+++++++++++..+ ...++++++.+++++.+ 
T Consensus       311 ~ii~~TLsKA~G~--~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~~-  387 (476)
T PLN02955        311 DLCVGTLSKAAGC--HGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKALS-  387 (476)
T ss_pred             cEEEEeCccchhc--cCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-
Confidence                589999982  125689999888888753322222  44566777788899887544 44566666666666521 


Q ss_pred             HhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCCCCCHHHHH
Q 011669          393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPLCFTKEDAD  467 (480)
Q Consensus       393 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~~~id  467 (480)
                          .++.      ...++.+.+        .+...+..+.+.|+++|+++.+..+     ....+||+.+..+|++||+
T Consensus       388 ----G~~~------~sPI~pI~i--------g~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId  449 (476)
T PLN02955        388 ----GVDI------SSPIISLVV--------GNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVK  449 (476)
T ss_pred             ----CCCC------CCCEEEEEe--------CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHH
Confidence                1111      123334444        2334567789999999999975321     2357999999999999999


Q ss_pred             HHHHHHHHHHh
Q 011669          468 YLVDVMDYSLS  478 (480)
Q Consensus       468 ~~l~~l~~~l~  478 (480)
                      .++++|.++..
T Consensus       450 ~lv~~L~~~~~  460 (476)
T PLN02955        450 KLITALSSCLD  460 (476)
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.96  E-value=3.9e-27  Score=240.66  Aligned_cols=337  Identities=17%  Similarity=0.137  Sum_probs=218.9

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC----C--CCC-CEEEEeCCHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM----P--GNL-KVVFFTNSGTEA  170 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~----~--~~~-~~v~f~~sGseA  170 (480)
                      |..++||..|.+..  + .++.+.+++.+.+.+...  ..|......+|++.|++++    +  .+. ++|++|+|+++|
T Consensus        31 ~~~~i~l~~g~p~~--~-~~~~~~~~~~~~~~~~~~--~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a  105 (399)
T PRK07681         31 GHKMIDLSIGNPDM--P-PADFVREEMVHTANQKES--YGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDG  105 (399)
T ss_pred             CCCeEEeCCCCCCC--C-CCHHHHHHHHHHHhcccc--CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHH
Confidence            56789998887653  3 468888888887654211  1122233444555555443    2  355 689999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +..+++....  +++.|++.+++|.++...+...             |+..+++|....+.|..|    .+++++.+.  
T Consensus       106 l~~~~~~~~~--~Gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~~~~~~~~~~d----~~~l~~~~~--  164 (399)
T PRK07681        106 LVHLPMVYAN--PGDIILVPDPGYTAYETGIQMA-------------GATSYYMPLKKENDFLPD----LELIPEEIA--  164 (399)
T ss_pred             HHHHHHHhCC--CCCEEEECCCCccchHHHHHhc-------------CCEEEEEecCCCCCCcCC----HHHHHHhcc--
Confidence            9998876543  6788999999997765544332             333344333212223223    456665553  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cc---cCCCcceeeecccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EA---HGVVPDIVTMAKGI  326 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~---~~~~pDivt~sK~~  326 (480)
                        .++++|++...+|++|.+. +++.+++|.++|++||+++|+||+|.+|...+.....+ ..   .+....+.+|||.+
T Consensus       165 --~~~k~v~l~~P~NPTG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  241 (399)
T PRK07681        165 --DKAKMMILNFPGNPVPAMA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSY  241 (399)
T ss_pred             --ccceEEEEeCCCCCcCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeeccccc
Confidence              2566666664477788764 88889999999999999999999999885444111111 11   12233355899999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                      + .|+|+||+++++++++.+........++.+.+.+.++.++|+..  +.+.++.++..+..++.+.+..+++++.....
T Consensus       242 ~~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p  319 (399)
T PRK07681        242 SLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNG--AAFCEKNRGIYQERRDTLVDGFRTFGWNVDKP  319 (399)
T ss_pred             CCccceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence            8 89999999999999988876544456778888888888887631  23333333333333333433333444221123


Q ss_pred             ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      ..|+++|+++...        ....++.+.|++ +||.+.++..+    .+++||+.  ..+++++++++++|.+
T Consensus       320 ~~g~f~~~~l~~~--------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~--~~~~~~~~~~l~~l~~  384 (399)
T PRK07681        320 AGSMFVWAEIPKG--------WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIAL--VQDEEVLQQAVENIRN  384 (399)
T ss_pred             CeeeEEEEECCCC--------CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEe--cCCHHHHHHHHHHHHH
Confidence            4578888887421        113567777776 89999987543    35899994  4688999999999987

>PLN00175 aminotransferase family protein; Provisional

Probab=99.96  E-value=1.4e-26  Score=237.17  Aligned_cols=340  Identities=16%  Similarity=0.145  Sum_probs=219.9

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccCChHHHHHHHHHHHhCC--CCCC-EEEEeCCHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMP--GNLK-VVFFTNSGTEANELA  174 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~l~e~L~~~~~--~~~~-~v~f~~sGseA~~~A  174 (480)
                      ..|||..|.+..   ..++.+.+++.+.+.+..  +....+..+....+++.+.+..+  .+.+ +|++|+|+++|+..+
T Consensus        55 ~~i~l~~G~P~~---~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~  131 (413)
T PLN00175         55 GAINLGQGFPNF---DGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAAT  131 (413)
T ss_pred             CeEecCCCCCCC---CCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHH
Confidence            579999888764   247889999988877521  11111222333444444444333  2344 699999999999998


Q ss_pred             HHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCc
Q 011669          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (480)
Q Consensus       175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (480)
                      +....  .+++.|++.+++|..+.......             |...+.++... ..|..|    .+++++.+.    .+
T Consensus       132 ~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~-~~~~~~----~~~l~~~~~----~~  187 (413)
T PLN00175        132 ILGLI--NPGDEVILFAPFYDSYEATLSMA-------------GAKIKTVTLRP-PDFAVP----EDELKAAFT----SK  187 (413)
T ss_pred             HHHhC--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEEECCc-ccCCCC----HHHHHHhcC----cC
Confidence            88543  36789999999997665443322             22222222110 013333    567777764    25


Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccC---CCcceeeeccccc-cC
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHG---VVPDIVTMAKGIG-NG  329 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~---~~pDivt~sK~~g-~G  329 (480)
                      +++|++.+.+|++|.+ .+++.+++|.++|++||+++|+||+|..|.+.+ ....+ +..+   ...-+.+|||.++ .|
T Consensus       188 ~k~i~i~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~s~~~~~~~~~~vi~i~SfSK~~~~~G  265 (413)
T PLN00175        188 TRAILINTPHNPTGKM-FTREELELIASLCKENDVLAFTDEVYDKLAFEG-DHISMASLPGMYERTVTMNSLGKTFSLTG  265 (413)
T ss_pred             ceEEEecCCCCCCCcC-CCHHHHHHHHHHHHHcCcEEEEecccCccccCC-cccChhhCCCCcCcEEEEecchhhccCcc
Confidence            6778887778888876 488899999999999999999999999875544 22111 1112   2223447999999 89


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec-cc
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG-RG  408 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-~g  408 (480)
                      +|+||+++++++++.+.......+++.+++.+.++.++|+..  +.+.++.++.-+..++.+.+..++++. ....+ .|
T Consensus       266 ~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~p~g~  342 (413)
T PLN00175        266 WKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAP--ESYYEELKRDYSAKKDILVEGLKEVGF-KVYPSSGT  342 (413)
T ss_pred             hheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCC-eecCCCee
Confidence            999999999999988876555567888999999998888632  233333333333333333333333332 22233 35


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY-------GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~-------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++|+.+...+.      .....+++.|+ ++||.+.|+..|       .+++||+.  +.+++++++++++|.+.+++
T Consensus       343 ~f~~~~~~~~~~------~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~--~~~~e~l~~~~~rL~~~~~~  413 (413)
T PLN00175        343 YFVMVDHTPFGF------ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAF--CKDEETLRAAVERMKTKLKR  413 (413)
T ss_pred             EEEEEeccccCC------CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHhC
Confidence            567877632110      01346777765 679999987433       35899995  56899999999999998864

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.1e-26  Score=236.04  Aligned_cols=339  Identities=15%  Similarity=0.133  Sum_probs=221.0

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANELAI  175 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~~~Al  175 (480)
                      .+++|..|.+..   ..++.+.+++.+.+....  +....+..+....+++.+.+.++  .+.++|++++|+++|+..++
T Consensus        25 ~~i~l~~g~~~~---~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~  101 (382)
T PRK06108         25 GVLPLWFGESDL---PTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA  101 (382)
T ss_pred             CeEEecCCCCCC---CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence            468888887753   247899999988776532  11112233445556665555544  45678999999999999999


Q ss_pred             HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC-CCCCCChHHHHHHHHHHHHccCCCc
Q 011669          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGADGEMYAKDVQDLIDFGTSGH  254 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~d~~~~~~~le~~i~~~~~~~  254 (480)
                      +....  +++.|++.+++|..........             |+..+.+|.... ..|..|    .+++++.++    .+
T Consensus       102 ~~l~~--~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~~d----~~~l~~~~~----~~  158 (382)
T PRK06108        102 QALVG--PGDEVVAVTPLWPNLVAAPKIL-------------GARVVCVPLDFGGGGWTLD----LDRLLAAIT----PR  158 (382)
T ss_pred             HHhcC--CCCEEEEeCCCccchHHHHHHC-------------CCEEEEeeCCCCCCCccCC----HHHHHHhcC----cc
Confidence            86643  5678999999987654332211             333333332111 122223    566776664    25


Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcccc-CCCccc-ccccCCCcc---eeeeccccc-c
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART-GSHFWG-FEAHGVVPD---IVTMAKGIG-N  328 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~-G~~~~~-~~~~~~~pD---ivt~sK~~g-~  328 (480)
                      ++++++...+|++|.+ .+.+.+++|.++|++||+++|+||+|.+|... +..... ....+....   +.+|||.++ +
T Consensus       159 ~~~i~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~  237 (382)
T PRK06108        159 TRALFINSPNNPTGWT-ASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMT  237 (382)
T ss_pred             ceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCc
Confidence            6667676667888876 48889999999999999999999999988543 211111 111111122   347999998 7


Q ss_pred             CccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec
Q 011669          329 GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG  406 (480)
Q Consensus       329 G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  406 (480)
                      |+|+||+++++++++.+.......+++.+++.+.++.++|+...+  ++..+++++..+++.+.|++    ++.+....+
T Consensus       238 G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p  313 (382)
T PRK06108        238 GWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRA----LPGVEVAKP  313 (382)
T ss_pred             ccceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh----CCCCcccCC
Confidence            999999999999988876544445677888999888888863211  22334444444444444433    332333333


Q ss_pred             c-ceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          407 R-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       407 ~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      . |+++|+.+...        .....+++.|+ ++||.+.++..+    .+++||++..  +++++++++++|.+++++
T Consensus       314 ~~g~~~~~~l~~~--------~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~  382 (382)
T PRK06108        314 DGAMYAFFRIPGV--------TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLAR  382 (382)
T ss_pred             CeeEEEEEeCCCC--------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHhC
Confidence            3 55667776321        11356777764 679999887433    4689999765  899999999999998753

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.8e-26  Score=235.85  Aligned_cols=344  Identities=13%  Similarity=0.072  Sum_probs=220.8

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc---ccccccCChHHHHHHHHHHHhCC--CCC-CEEEEeCCHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMP--GNL-KVVFFTNSGTEANE  172 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~l~e~L~~~~~--~~~-~~v~f~~sGseA~~  172 (480)
                      +..+||..|... .+ ..+|.+.+++.+.+....   +....+..+....+++.+++.++  .+. ++|++|+|+++|+.
T Consensus        39 ~~~i~l~~g~~~-~~-~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~  116 (405)
T PRK06207         39 GRPVDFSHGDVD-AH-EPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF  116 (405)
T ss_pred             CCceecCCcCCC-CC-CCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence            456688777654 23 356788998888776421   11122233455666667766655  344 78999999999999


Q ss_pred             HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC---cCCCCCCChHHHHHHHHHHHHc
Q 011669          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP---YRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~---~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      .+++...  .+++.|++.+++|.+........             |...++++..   ....|+.|    .++++++++.
T Consensus       117 ~~~~~l~--~~Gd~Vlv~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~~~~~~d----~~~l~~~~~~  177 (405)
T PRK06207        117 LAVAATV--ARGDKVAIVQPDYFANRKLVEFF-------------EGEMVPVQLDYLSADKRAGLD----LDQLEEAFKA  177 (405)
T ss_pred             HHHHHhc--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEEeccccCcccCCCcC----HHHHHHhhhh
Confidence            9998654  36789999999998765443322             2222222211   01123333    5677777753


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc----CCCcceeeeccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTMAKG  325 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~----~~~pDivt~sK~  325 (480)
                          ++++|++...+|++|.+. +.+.+++|.++|++||+++|+||+|..|...|...-.+...    +...-+.+|||.
T Consensus       178 ----~~k~v~l~~P~NPTG~~~-s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~  252 (405)
T PRK06207        178 ----GVRVFLFSNPNNPAGVVY-SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKT  252 (405)
T ss_pred             ----cCeEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhh
Confidence                355555444467777764 78889999999999999999999999886555211111111    112233479999


Q ss_pred             cc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       326 ~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                      ++ .|+|+||+++++++++.+........++.+.+.+.++.++|+.  .+.+.++..+.....++.+.+..++++.+...
T Consensus       253 ~~lpGlRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~  330 (405)
T PRK06207        253 ESLSGYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSE--PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVR  330 (405)
T ss_pred             ccCcccceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence            99 8999999999999988887644444556677788888777752  12222222222222334443333344333333


Q ss_pred             -eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          405 -RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       405 -~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                       ...|+++|+++....       .....+.+.|+ ++||.+.||..|    .+++||+..  .+++++++++++|.++++
T Consensus       331 ~p~gg~fl~~~l~~~~-------~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~l~  401 (405)
T PRK06207        331 APQAGSYLFPRLPRLA-------VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQLIE  401 (405)
T ss_pred             CCCeeEEEEEeCcccC-------CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence             334788899874211       11356777776 689999998543    468999954  589999999999999886


Q ss_pred             h
Q 011669          479 K  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       402 ~  402 (405)
T PRK06207        402 R  402 (405)
T ss_pred             H
Confidence            5

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=2e-26  Score=232.95  Aligned_cols=329  Identities=19%  Similarity=0.230  Sum_probs=223.5

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      ++++++||.++...  +| .+|.+.+++.+.+...    ..|+.....++++.++++++.+.++|++++|+++++..++.
T Consensus        30 ~~~~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~----~~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~  102 (367)
T PRK02731         30 GIADIIKLASNENP--LG-PSPKAIEAIRAAADEL----HRYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLAR  102 (367)
T ss_pred             CCCceEEecCCCCC--CC-CCHHHHHHHHHHHHhh----cCCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence            57789999987644  45 5788999999877653    23444445789999999997767789999999999988776


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      ...  .+++.|++.+++|.++.......             |.....+|.   ..+..|    .+++++.++    ++++
T Consensus       103 ~l~--~~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~---~~~~~~----~~~l~~~~~----~~~~  156 (367)
T PRK02731        103 AYL--GPGDEVIYSEHGFAVYPIAAQAV-------------GAKPVEVPA---KDYGHD----LDAMLAAVT----PRTR  156 (367)
T ss_pred             Hhc--CCCCEEEEecCCHHHHHHHHHHc-------------CCeEEEecc---cCCCCC----HHHHHHHhC----CCCc
Confidence            542  35688999999997654433221             233333322   112233    566777664    2566


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCccee---eeccccc-cCc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGI  330 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv---t~sK~~g-~G~  330 (480)
                      +|++..+++++|.+.+    ++++.++|+.  +|+++|+||+|..+.+.+....++...+..++++   +|||.+| +|+
T Consensus       157 ~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~  232 (367)
T PRK02731        157 LVFIANPNNPTGTYLP----AEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGL  232 (367)
T ss_pred             EEEEeCCCCCCCcCCC----HHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCccc
Confidence            7777777888888865    4555555554  4999999999987765431121222222234444   7999998 799


Q ss_pred             cccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecccee
Q 011669          331 PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (480)
Q Consensus       331 pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~  410 (480)
                      |+||+++++++++.+....  .+++.+++++.++.+.|+   .+++.++.++....+++.+.+..++++. ....+.|.+
T Consensus       233 RiG~l~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~g~~  306 (367)
T PRK02731        233 RVGYGIAPPEIIDALNRVR--QPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMAWLTEFLAELGL-EYIPSVGNF  306 (367)
T ss_pred             ceeeeeCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCCceE
Confidence            9999999999988876543  356678888888887775   3444444544444445555544444442 223456888


Q ss_pred             EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCC--CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG--NVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~--~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +|+.+...        ....++.+.|.++||++.++..++  +++||++   .+.++++.++++|+++++.
T Consensus       307 ~~i~~~~~--------~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~---~~~~e~~~l~~aL~~~~~~  366 (367)
T PRK02731        307 ILVDFDDG--------KDAAEAYQALLKRGVIVRPVAGYGLPNALRITI---GTEEENRRFLAALKEFLAA  366 (367)
T ss_pred             EEEECCCC--------CCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHhc
Confidence            89887221        124678888999999999875543  6899995   3789999999999998763

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=6.2e-27  Score=235.92  Aligned_cols=324  Identities=14%  Similarity=0.135  Sum_probs=230.7

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      +++..||+..|...  +| .+|.+.+++.+.+...    ..|+.....+|++.|+++++.+.++|++++|++|++..+++
T Consensus        27 ~~~~~i~l~~nen~--~~-~~~~v~~a~~~~~~~~----~~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~   99 (366)
T PRK01533         27 GDHSFVKLASNENP--FG-CSPRVLDELQKSWLDH----ALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISR   99 (366)
T ss_pred             CCCceEEeCCCCCC--CC-CCHHHHHHHHHHHHhc----CcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            35678998887654  44 6789999998876553    24666677889999999998788899999999999999988


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      ....  +++.|++.+++|.++...+...             |+..+.+|..   .+..|    .+++++.++.    +++
T Consensus       100 ~l~~--~gd~vlv~~P~y~~~~~~~~~~-------------g~~v~~v~~~---~~~~d----~~~l~~~~~~----~~~  153 (366)
T PRK01533        100 AVLK--AGDNIVTAGATFPQYRHHAIIE-------------GCEVKEVALN---NGVYD----LDEISSVVDN----DTK  153 (366)
T ss_pred             HhcC--CCCEEEEcCCcHHHHHHHHHHc-------------CCEEEEeecC---CCCcC----HHHHHHHhCc----CCc
Confidence            6543  6678999999998766544322             3333333321   11123    5677776642    445


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc---ccccCCCcceeeeccccc-cCccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG---FEAHGVVPDIVTMAKGIG-NGIPL  332 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~---~~~~~~~pDivt~sK~~g-~G~pi  332 (480)
                      ++++...+|++|.+. +.+.+++|.++|++++ ++|+||+|..|...+...-.   .+..+...-+-||||.+| +|+|+
T Consensus       154 ~v~i~~P~NPTG~~~-~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRi  231 (366)
T PRK01533        154 IVWICNPNNPTGTYV-NDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRV  231 (366)
T ss_pred             EEEEeCCCCCCCCCc-CHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHH
Confidence            555555577788775 7778888999998876 57779999877533211001   111122223347999999 89999


Q ss_pred             cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (480)
Q Consensus       333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  412 (480)
                      ||+++++++++.+....  .+++.|.+++.++.++|+   ++++.+++++.....++.+.++.+.++ +....+.|.|+|
T Consensus       232 G~~i~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~~~g-~~~~~~~~nf~~  305 (366)
T PRK01533        232 GYAVGHEELIEKLNVVR--LPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCKENE-IPFYQSQTNFIF  305 (366)
T ss_pred             hHHhCCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCcCcEEE
Confidence            99999999998886543  457889999999998885   455666666665666666666665554 334456788999


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +.+..           ...+.+.|+++||++++.   .+++||+   ..+.++++.++++|+++++
T Consensus       306 ~~~~~-----------~~~~~~~l~~~GI~Vr~~---~~~iRis---~~~~~~~~~l~~al~~~~~  354 (366)
T PRK01533        306 LPVEN-----------GGEIYEACAHAGFIIRPF---PNGVRIT---VGTREQNEGVISVLQQHFE  354 (366)
T ss_pred             EeCCC-----------HHHHHHHHHHCCcEEccC---CCceEEe---CCCHHHHHHHHHHHHHHHH
Confidence            98621           356888999999999973   5789999   6689999999999998875

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.96  E-value=1.2e-26  Score=236.20  Aligned_cols=342  Identities=13%  Similarity=0.091  Sum_probs=214.9

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC----C--CCCC-EEEEeCCHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNLK-VVFFTNSGT  168 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~----~--~~~~-~v~f~~sGs  168 (480)
                      +|+.++||..|....  + .++.+.+++.+.+....  ...|. .....+|++++++++    +  .+.+ +|++|+|++
T Consensus        28 ~~~~~i~l~~~~~~~--~-~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~  102 (388)
T PRK07366         28 AGKELIDLSLGSSDL--P-APAHALEAIAQSLHDPS--THGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQ  102 (388)
T ss_pred             cCCCeEEeCCCCCCC--C-CCHHHHHHHHHHHhCcc--cCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcH
Confidence            466788988876543  3 47899999988775421  11232 233455666666554    3  3455 699999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +|+..++++...  +++.|++.+++|.++...+...             |...+++|....+.|..|    .+++++.+.
T Consensus       103 ~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~~~  163 (388)
T PRK07366        103 EGTAHLPLAVLN--PGDFALLLDPGYPSHAGGVYLA-------------GGQIYPMPLRAENDFLPV----FADIPTEVL  163 (388)
T ss_pred             HHHHHHHHHhCC--CCCEEEEcCCCCcchHHHHHhc-------------CCEEEEEECCCccCCCCC----HHHHHHhhc
Confidence            999998886543  6788999999998766544433             333333332211223223    344544442


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC-cccc---ccc-CCCcceeeec
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-FWGF---EAH-GVVPDIVTMA  323 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~-~~~~---~~~-~~~pDivt~s  323 (480)
                          .+++++++.+.+|++|.+. +.+.+++|.++|++||++||+||+|..|...+.. ...+   +.. ....-+-+||
T Consensus       164 ----~~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfS  238 (388)
T PRK07366        164 ----AQARLMVLSYPHNPTTAIA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLS  238 (388)
T ss_pred             ----ccceEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecc
Confidence                2456667667778888764 8889999999999999999999999988554411 1111   111 1112234899


Q ss_pred             cccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (480)
Q Consensus       324 K~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  402 (480)
                      |.+| .|+|+||+++++++++.+........++..+..+.++.++|.  ..+++.++.++.-+..++.+.+..+++++..
T Consensus       239 K~~g~~GlRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~--~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~  316 (388)
T PRK07366        239 KSYNMGGFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALT--GPQATVQQTVQIFRQRRDAFINALHQIGWPV  316 (388)
T ss_pred             cccCCcchhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence            9998 899999999999999887654433334443333445555553  2234444444443334444444444444322


Q ss_pred             eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       403 ~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      .....|+++|+++....      .....++++.| .++||.+.++..|    .+++||+.  +.+++++++++++|.+++
T Consensus       317 ~~p~~g~f~~~~~~~~~------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~l~rl~~~l  388 (388)
T PRK07366        317 PLPEATMYVWAKLPEPW------QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFAL--VHDPDILEEAVERIAAFL  388 (388)
T ss_pred             cCCCeeEEEEEECCccc------CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEe--cCCHHHHHHHHHHHHHhC
Confidence            33556888899874210      00134566665 5779999997433    36899994  568999999999998753

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=1.4e-26  Score=233.19  Aligned_cols=326  Identities=20%  Similarity=0.184  Sum_probs=220.4

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      +|..++||..|....   ..+|.+.+++.+.+...    ..|+.....+|++.++++++.+.++|++|+|+++++..+++
T Consensus        28 ~~~~~i~l~~~~~~~---~~~~~~~~~~~~~~~~~----~~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~  100 (357)
T PRK14809         28 DPDDLVKLSSNENPH---GPSPAAVEAIREAAERV----HSYPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLAR  100 (357)
T ss_pred             CccceeEecCCCCCC---CCCHHHHHHHHHHHhhh----hcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            456799998876543   35788999998876542    23455557789999999998788899999999999999988


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      ....  +++.|++.+++|..+....... +.          ++..++.+.  ...|..+    .+++++..+     +++
T Consensus       101 ~~~~--~gd~V~v~~P~y~~~~~~~~~~-g~----------~~~~~~l~~--~~~~~~~----~~~~~~~~~-----~~k  156 (357)
T PRK14809        101 AMLD--PGDTVLVPDPGFAYYGMSARYH-HG----------EVREYPVSK--ADDFEQT----ADTVLDAYD-----GER  156 (357)
T ss_pred             HhcC--CCCEEEEeCCChHHHHHHHHHc-CC----------eEEEEeccc--CcCCCcC----HHHHHHhhc-----CCc
Confidence            6543  6788999999986444322111 10          222222221  1123222    233433321     345


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCcccccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAV  335 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v  335 (480)
                      ++++.+.+|++|.+. +.+.+++|.++|++ ++++|+||+|..|...++.....+..+....+.||||.++ .|+|+||+
T Consensus       157 ~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~  234 (357)
T PRK14809        157 IVYLTSPHNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYA  234 (357)
T ss_pred             EEEEeCCCCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheee
Confidence            666667778888775 66677788887765 7899999999988654411111222233344558999998 89999999


Q ss_pred             ccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEE
Q 011669          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF  415 (480)
Q Consensus       336 ~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~  415 (480)
                      ++++++++.+....  .+++.+++++.+++++|+   ++++.++.++..+..++.+.+.....    ..+..|+++|+++
T Consensus       235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~g~f~~~~~  305 (357)
T PRK14809        235 VVPEEWADAYARVN--TPFAASELACRAGLAALD---DDEHVERTVETARWAREYIREELDAP----TWESAGNFVLAEV  305 (357)
T ss_pred             ecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcCc----cCCCCCCEEEEEC
Confidence            99999988887543  467788888888888774   34444444444444444444433222    1246788888876


Q ss_pred             ecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          416 VTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+           ..++.+.|.++||.+.++..+  .+++||+.   .+++++++++++|+++++
T Consensus       306 ~~-----------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~---~~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        306 GD-----------ASAVAEAAQERGVIVRDCTSFGLPECIRITC---GTREETERAVEVLNEVLA  356 (357)
T ss_pred             CC-----------HHHHHHHHHHCCEEEEECccCCCCCeEEEec---CCHHHHHHHHHHHHHHhc
Confidence            21           356778888999999998655  36899993   368999999999999875

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.95  E-value=3.8e-26  Score=233.44  Aligned_cols=350  Identities=15%  Similarity=0.086  Sum_probs=218.9

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC----C---CCCC-EEEEeCCHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM----P---GNLK-VVFFTNSGT  168 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~----~---~~~~-~v~f~~sGs  168 (480)
                      .|+.++|+..|....  + .+|.+.+++.+.+....  ...|+.....+|++.+++.+    +   .+.+ +|++|+|++
T Consensus        42 ~~~~~i~L~~g~p~~--~-~~~~~~~~l~~~~~~~~--~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~  116 (410)
T PRK06290         42 PDMELIDMGVGEPDE--M-ADESVVEVLCEEAKKPE--NRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSK  116 (410)
T ss_pred             CCCCeEEcCCCCCCC--C-CCHHHHHHHHHHHhCCC--CCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHH
Confidence            566789998887643  4 46788888887664321  12233334455555555553    3   2344 799999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +++..++.....  +++.|++.+++|.++...+...             |...+.+|....+.|..|    .+++++.+.
T Consensus       117 ~al~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~~~d----~~~l~~~~~  177 (410)
T PRK06290        117 PALAMLPSCFIN--PGDVTLMTVPGYPVTGTHTKYY-------------GGEVYNLPLLEENNFLPD----LDSIPKDIK  177 (410)
T ss_pred             HHHHHHHHHhCC--CCCEEEEeCCCCccHHHHHHHc-------------CCEEEEEecCCCcCCcCC----HHHHHHhhc
Confidence            999998876543  6788999999998765443322             333333332212223223    456666654


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--Cccccc-ccCCCcceeeeccc
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFE-AHGVVPDIVTMAKG  325 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~~~~~~-~~~~~pDivt~sK~  325 (480)
                          .++++|++...+|++|.+. +.+.+++|.++|++||++||+||+|..+...+.  .+.... ..+...-+.+|||.
T Consensus       178 ----~~~k~i~l~nP~NPTG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~  252 (410)
T PRK06290        178 ----EKAKLLYLNYPNNPTGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKA  252 (410)
T ss_pred             ----ccceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhh
Confidence                2566777665578888775 888999999999999999999999998744331  111111 11222334589999


Q ss_pred             cc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       326 ~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                      ++ .|+|+||+++++++++.+.........+.+.+++.++.++|+.   .++.++.++..+..++.+.+..+++++ ...
T Consensus       253 ~g~~GlRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~  328 (410)
T PRK06290        253 YNMTGWRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDH---PEITEKIREKYSRRLDKLVKILNEVGF-KAE  328 (410)
T ss_pred             cCCchhheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhC---cHHHHHHHHHHHHHHHHHHHHHHhCCC-eec
Confidence            97 7999999999999998877544444555556778877777752   233333333333333333333333442 222


Q ss_pred             ec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcC-ceeeccCcCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHhhC
Q 011669          405 RG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMG-VLVGKGGFYGNVFRITPP-LCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       405 ~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~~~~~~~iRi~p~-~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ++ .|+++|+.+....... -......++++.|+++| +++.|+..+++++||+.. ...++++.++++++|++.|.++
T Consensus       329 ~p~g~f~l~v~lp~~~~~~-~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~  406 (410)
T PRK06290        329 MPGGTFYLYVKAPKGTKSG-IKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV  406 (410)
T ss_pred             CCCeeeEEEEECCCccccC-CCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence            33 3556677764321000 00012457888888875 555676556789999943 1258899999999999998754

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.95  E-value=8.6e-26  Score=230.99  Aligned_cols=354  Identities=13%  Similarity=0.062  Sum_probs=221.8

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhc---cccccccCChHHHHHHHHHHHhCC--CCCC-EEEEeCCHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI---QHSTVLYLNHAIADFAEALASKMP--GNLK-VVFFTNSGTEA  170 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~---~~~~~~~~~~~~~~l~e~L~~~~~--~~~~-~v~f~~sGseA  170 (480)
                      .|..++||..|.+..   ..++.+.+++.+.+...   .+....+.......+++.+.+..+  .+.+ +|++|+|+++|
T Consensus        31 ~~~~~~~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a  107 (403)
T PRK08636         31 AGEDIIDFSMGNPDG---PTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG  107 (403)
T ss_pred             cCCCEEEcCCcCCCC---CCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence            456789998876543   34566777777655432   111112222344455555544433  3455 79999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +..+++....  +++.|++.+++|.+........             |...+++|..+...|+-|.+...+.++++++..
T Consensus       108 l~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  172 (403)
T PRK08636        108 YVHLVQAITN--PGDVAIVPDPAYPIHSQAFILA-------------GGNVHKMPLEYNEDFELDEDQFFENLEKALRES  172 (403)
T ss_pred             HHHHHHHhCC--CCCEEEEcCCCCcchHHHHHhc-------------CCEEEEEeccccccCccChhhhhhHHHHHHhhc
Confidence            9999986543  6789999999998765544332             333333332222234445444445677777643


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCc---cccccc-CCCcceeeecccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF---WGFEAH-GVVPDIVTMAKGI  326 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~---~~~~~~-~~~pDivt~sK~~  326 (480)
                      . .+++++++...+|++|.+ .+.+.+++|.++|++|++++|+||+|..|-..+...   ...+.. +....+.+|||.+
T Consensus       173 ~-~~~~~i~~~~P~NPTG~~-~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  250 (403)
T PRK08636        173 S-PKPKYVVVNFPHNPTTAT-VEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSY  250 (403)
T ss_pred             c-CCceEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEeccccc
Confidence            2 246666666556777766 488889999999999999999999999875444111   112111 2222334799999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                      | .|+|+||+++++++++.+........++.+.+.+.++..+++.  .+.+.+++++.....++.+.+...++++.....
T Consensus       251 ~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p  328 (403)
T PRK08636        251 NMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRDVLIESFANAGWELQKP  328 (403)
T ss_pred             CCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence            7 8999999999999988876544334456666677766655531  233444444433333444433333333221233


Q ss_pred             ccceeEEEEEecCCCcCCCCHHHHHHHHHH-HHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDK-MKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..|+++|+.+.....     ......+.+. ++++||.+.|+..|    .+++||+.  ..+++++++++++|.++++.
T Consensus       329 ~~g~~~~~~l~~~~~-----~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~~~rl~~~l~~  400 (403)
T PRK08636        329 RASMFVWAKIPEPAR-----HLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIAL--IENENRIRQAARNIKKFLKE  400 (403)
T ss_pred             CcceEEEEECCCccC-----CCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHh
Confidence            468888998742110     0013456655 45789999997433    36899995  46899999999999998864

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.95  E-value=5.1e-26  Score=234.71  Aligned_cols=333  Identities=14%  Similarity=0.076  Sum_probs=214.6

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhCC---CCCCEEEEeCCHHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMP---GNLKVVFFTNSGTEANELAI  175 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~~---~~~~~v~f~~sGseA~~~Al  175 (480)
                      ..+||..|.+..   ...|.+.+++.+.+...    ..|.. ....+|++.+++++.   ...++|++|+|+++|+..++
T Consensus        86 ~~i~L~~g~p~~---~~~p~~~~~~~~~~~~~----~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~  158 (431)
T PRK15481         86 PLHDLAGGNPDP---QRLPDLSRYFARLSRTP----RLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLL  158 (431)
T ss_pred             hhhhhhcCCCCh---hHhHHHHHHHHHhhhhh----hhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHH
Confidence            456766654322   12366777776654432    12332 234556666666653   12358999999999999999


Q ss_pred             HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (480)
                      +....  +++.|++.+|+|.+....+...             |...+++|... ..+  |    .++++++++.    ++
T Consensus       159 ~~l~~--pgd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~-~g~--~----~~~l~~~~~~----~~  212 (431)
T PRK15481        159 CAHLL--PGDSVAVEDPCFLSSINMLRYA-------------GFSASPVSVDA-EGM--Q----PEKLERALAQ----GA  212 (431)
T ss_pred             HHhCC--CCCEEEEeCCCcHHHHHHHHHc-------------CCeEEeeccCC-CCC--C----HHHHHHHHhc----CC
Confidence            86554  6789999999998776554433             22223332210 011  2    5678877752    45


Q ss_pred             EEEEEcc-cCCCCcceeCCCChHHHHHHHHHHh-CCEEEEcccccCccccCCCcccccc-cCCCcceeeeccccccCccc
Q 011669          256 AGFLSES-IQGVGGIIELAPGYLPAVYKSIKKA-GGLCIADEVQAGFARTGSHFWGFEA-HGVVPDIVTMAKGIGNGIPL  332 (480)
Q Consensus       256 a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~tgfgr~G~~~~~~~~-~~~~pDivt~sK~~g~G~pi  332 (480)
                      +++++.| .||++|.+. +.+.+++|.++|++| ++++|+||+|..|...+ ..-.... .+...-+-||||.++.|+|+
T Consensus       213 k~i~~~p~p~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~-~~~~~~~~~~~vi~~~SfSK~~~~GlRi  290 (431)
T PRK15481        213 RAVILTPRAHNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSSSP-YHSVIPQTTQRWALIRSVSKALGPDLRL  290 (431)
T ss_pred             CEEEECCCCCCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhccCC-CCCCCcCCCCCEEEEeeeccccCCCcee
Confidence            6666663 667777764 888899999999999 99999999999885433 1111111 11122234899999999999


Q ss_pred             cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (480)
Q Consensus       333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  412 (480)
                      ||+++++++++.+.......+++.+.+++.++.++|+.-.-+.+.+.+++.-+..++.+.+..++++.....+..|+++|
T Consensus       291 G~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~  370 (431)
T PRK15481        291 AFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLW  370 (431)
T ss_pred             EEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEE
Confidence            99999999988886543334566788999999888863111122222222222233333333333333222455688889


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +.+..+          ...+.+.|.++||.+.+|..|     ++++||+... .+++++++++++|.+++.
T Consensus       371 ~~l~~~----------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        371 LPLDTD----------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEINRLAADLHQALN  430 (431)
T ss_pred             EECCCC----------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence            887321          356778888999999997544     2579999653 578999999999999875

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.95  E-value=7.2e-26  Score=231.00  Aligned_cols=346  Identities=14%  Similarity=0.128  Sum_probs=220.8

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC------CCCCCEEEEeCCHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM------PGNLKVVFFTNSGTEAN  171 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~------~~~~~~v~f~~sGseA~  171 (480)
                      +..++||..|....   ..+|++.+++.+.+.....  .........+|++.|++++      ..+.+++++++|+++|+
T Consensus        30 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~  104 (393)
T PRK05764         30 GRDVISLGAGEPDF---DTPEHIKEAAIEALDDGKT--KYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQAL  104 (393)
T ss_pred             cCCEEEeCCCCCCC---CCCHHHHHHHHHHHhcCCC--CcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHH
Confidence            34578888888654   3578999999887764311  1112333455666666554      23456899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ..++..+..  .++.|++.+++|.++...+...             |...+.++......|..|    .+++++.++   
T Consensus       105 ~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~---  162 (393)
T PRK05764        105 YNAFMALLD--PGDEVIIPAPYWVSYPEMVKLA-------------GGVPVFVPTGEENGFKLT----VEQLEAAIT---  162 (393)
T ss_pred             HHHHHHhcC--CCCEEEecCCCCcchHHHHHHc-------------CCEEEEEecCcccCCcCC----HHHHHHhhC---
Confidence            998886543  6778999999987654433222             233333322211223223    466777664   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc-----ccCCCcceeeecccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE-----AHGVVPDIVTMAKGI  326 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~-----~~~~~pDivt~sK~~  326 (480)
                       +++++|++...+|++|.+. +.+.+++|.++|++||+++|+||+|..+...+..+....     ..+....+.+|||.+
T Consensus       163 -~~~~~v~~~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~  240 (393)
T PRK05764        163 -PKTKALILNSPSNPTGAVY-SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAY  240 (393)
T ss_pred             -ccceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccc
Confidence             2455555555567778764 677899999999999999999999987754442111211     112222334799999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                      + .|+|+||+++++++++.+.......+.+.+++++.++.+.|+.  .+++.++.++..+..++.+.+..++++.+....
T Consensus       241 ~~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  318 (393)
T PRK05764        241 AMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG--PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPK  318 (393)
T ss_pred             cCccceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC
Confidence            9 8999999999999988876544345567788888888888752  223333333333333444444444442233333


Q ss_pred             cc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcCC--CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          406 GR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFYG--NVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       406 g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~--~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +. |.++|+.+.....   .......++.+.|. ++||.+.++..++  +++||+  +..+++++++++++|.+++++
T Consensus       319 ~~g~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~~~~~i~~l~~~~~~  391 (393)
T PRK05764        319 PEGAFYVFPNVSKLLG---KSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLEDLEEGLERIERFLES  391 (393)
T ss_pred             CCcceEEEEecccccc---cccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence            44 4567777643211   00001355666664 6799999876554  799999  557899999999999998865

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.95  E-value=1.8e-25  Score=228.18  Aligned_cols=341  Identities=12%  Similarity=0.045  Sum_probs=214.9

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-cccccCChHHHHHHHHHHHhCC---CCC-CEEEEeCCHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLNHAIADFAEALASKMP---GNL-KVVFFTNSGTEAN  171 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~l~e~L~~~~~---~~~-~~v~f~~sGseA~  171 (480)
                      .|+.+|||..|.+..  + .++.+.+++.+.+..... ....+..+....+++.+.+.++   .+. ++|++|+|+++|+
T Consensus        27 ~~~~~i~l~~~~p~~--~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al  103 (396)
T PRK09147         27 ADLPPISLSIGEPKH--P-TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL  103 (396)
T ss_pred             cCCCeEecCCCCCCC--C-CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence            478899998887653  2 468888988876653311 1112223344455555544434   334 3899999999999


Q ss_pred             HHHHHHHHhh-cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          172 ELAIMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       172 ~~Alk~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      ..+++..... ..++.|++.+++|.++.......             |+..+++|......|+.|    .+.+++.+.. 
T Consensus       104 ~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~vp~~~~~~~~~d----~~~l~~~~~~-  165 (396)
T PRK09147        104 FAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLA-------------GAEPYFLNCDPANNFAPD----FDAVPAEVWA-  165 (396)
T ss_pred             HHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhc-------------CCEEEEeccCccccCccC----HHHHHHHHhh-
Confidence            9999866541 11678999999997765443322             333334433222234334    4566655532 


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Cccc-cc---cc-----CCCccee
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWG-FE---AH-----GVVPDIV  320 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~-~~---~~-----~~~pDiv  320 (480)
                         +++++++...+|++|.+ .+++.+++|.++|++||+++|+||+|..|...+. .... ..   ..     +...-+.
T Consensus       166 ---~~k~i~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  241 (396)
T PRK09147        166 ---RTQLLFVCSPGNPTGAV-LPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFH  241 (396)
T ss_pred             ---ccEEEEEcCCCCCcCcc-CCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEe
Confidence               45666665567778876 4889999999999999999999999998754431 1111 10   11     1122234


Q ss_pred             eeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          321 TMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       321 t~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      +|||.++ .|+|+||+++++++++.+.......+++.+++.+.++.+.+.   .+++..+.++..+..++.+.+...++ 
T Consensus       242 S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-  317 (396)
T PRK09147        242 SLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWN---DEAHVRENRALYREKFDAVTPILAPV-  317 (396)
T ss_pred             ccccccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            7999987 799999999999998887654444556778888888777763   22333322222222222222222222 


Q ss_pred             ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----------CCEEEEeCCCCCCHHHHHH
Q 011669          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----------GNVFRITPPLCFTKEDADY  468 (480)
Q Consensus       400 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----------~~~iRi~p~~~~t~~~id~  468 (480)
                      ........|+++|+++..          ....+++.|+ ++||.+.+|..|          .+++||+  ++.+++++++
T Consensus       318 ~~~~~p~~g~f~~~~~~~----------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~--~~~~~~~l~~  385 (396)
T PRK09147        318 LDVQLPDAGFYLWAKVPG----------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIA--LVAPLAECVE  385 (396)
T ss_pred             cCCCCCCeeEEEEEECCC----------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEE--ecCCHHHHHH
Confidence            111234568888998731          1245666665 689999987533          3689999  4567899999


Q ss_pred             HHHHHHHHHh
Q 011669          469 LVDVMDYSLS  478 (480)
Q Consensus       469 ~l~~l~~~l~  478 (480)
                      ++++|.+++.
T Consensus       386 ~l~rl~~~~~  395 (396)
T PRK09147        386 AAERIVDFCR  395 (396)
T ss_pred             HHHHHHHHhc
Confidence            9999998774

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.95  E-value=1e-25  Score=229.59  Aligned_cols=344  Identities=13%  Similarity=0.069  Sum_probs=218.8

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC------CCCCCEEEEeCCHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM------PGNLKVVFFTNSGTEANE  172 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~------~~~~~~v~f~~sGseA~~  172 (480)
                      ..++||..|.+..  +. ++.+.+++.+.+.....  ..++.....+|++.+++++      +.+.++|++|+|+++|+.
T Consensus        33 ~~~i~l~~~~~~~--~~-~~~~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~  107 (391)
T PRK08361         33 ENVISLGIGEPDF--DT-PKNIKEAAKRALDEGWT--HYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATY  107 (391)
T ss_pred             cCeEEcCCCCCCC--CC-CHHHHHHHHHHHhcCCC--CCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHH
Confidence            3579988877553  32 68889988887654311  1112344455666666554      244678999999999999


Q ss_pred             HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (480)
Q Consensus       173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (480)
                      .+++....  +++.|++.+++|.+....+.. .            |...+++|....+.|..|    .+++++.++.   
T Consensus       108 ~~~~~l~~--~g~~Vlv~~p~y~~~~~~~~~-~------------g~~~~~v~~~~~~~~~~d----~~~l~~~i~~---  165 (391)
T PRK08361        108 LAFESLLE--EGDEVIIPDPAFVCYVEDAKI-A------------EAKPIRIPLREENEFQPD----PDELLELITK---  165 (391)
T ss_pred             HHHHHhcC--CCCEEEEcCCCCcccHHHHHH-c------------CCEEEEEecCCccCCCCC----HHHHHHhccc---
Confidence            99886533  667899999998765432221 1            233333332222223334    5677776652   


Q ss_pred             CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc--CCCcceeeeccccc-cC
Q 011669          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH--GVVPDIVTMAKGIG-NG  329 (480)
Q Consensus       253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~--~~~pDivt~sK~~g-~G  329 (480)
                       +++++++...+|++|.+. +.+.+++|.++|+++++++|+||+|..|...+.........  +...-+.+|||.+| .|
T Consensus       166 -~~~~v~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G  243 (391)
T PRK08361        166 -RTRMIVINYPNNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTG  243 (391)
T ss_pred             -ccEEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcH
Confidence             456666665677888764 77889999999999999999999998875433111111111  11122337999999 89


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc-c
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR-G  408 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g  408 (480)
                      +|+||+++++++++.+.......+++.+.+.+.++.++|+......+.++.++.-+..++.+.+..++++.+...... |
T Consensus       244 lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~  323 (391)
T PRK08361        244 WRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGA  323 (391)
T ss_pred             hhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEE
Confidence            999999999998887754433345677788888888777532111233333333333334333333334333333444 5


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      +++|+.+....       ....++.+.|+ ++||++.++..|    .+++||+..  .+++++++++++|.++++++
T Consensus       324 ~~~~~~l~~~~-------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~~l~~~  391 (391)
T PRK08361        324 FYVFANIDETG-------MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA--TSKEKLIEAMERMEKALEEL  391 (391)
T ss_pred             EEEEEECCCCC-------CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHhcC
Confidence            67788774211       11345666665 579999987543    368999954  68889999999999998764

>PRK08960 hypothetical protein; Provisional

Probab=99.95  E-value=8.7e-26  Score=229.83  Aligned_cols=339  Identities=14%  Similarity=0.075  Sum_probs=217.8

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC------CCCCCEEEEeCCHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM------PGNLKVVFFTNSGTEAN  171 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~------~~~~~~v~f~~sGseA~  171 (480)
                      |..++++..|....  + .++.+.+++.+.+....  ....+.....++++.+++++      +.+.++|++|+|+++|+
T Consensus        31 ~~~~i~l~~g~~~~--~-~~~~v~~a~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al  105 (387)
T PRK08960         31 GHDVIHLEIGEPDF--T-TAEPIVAAGQAALAAGH--TRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGAL  105 (387)
T ss_pred             CCCeEEeCCCCCCC--C-CCHHHHHHHHHHHhcCC--CccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHH
Confidence            44678887777642  2 47899999988876421  11112333445555555543      24567899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ..++.+..  .+++.|++.+++|.+..........           .+..++.  ...+.|..|    .+++++.++.  
T Consensus       106 ~~~~~~~~--~~gd~vlv~~p~y~~~~~~~~~~g~-----------~~~~v~~--~~~~~~~~d----~~~l~~~~~~--  164 (387)
T PRK08960        106 LLASSLLV--DPGKHWLLADPGYPCNRHFLRLVEG-----------AAQLVPV--GPDSRYQLT----PALVERHWNA--  164 (387)
T ss_pred             HHHHHHhc--CCCCEEEEcCCCCcchHHHHHhcCC-----------eEEEEec--CcccCCCCC----HHHHHHHhCc--
Confidence            99987653  3678999999999876554432211           1222222  111223333    5667776642  


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee---eeccccc-
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-  327 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv---t~sK~~g-  327 (480)
                       +...++++.| +|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+ ....  .....++++   +|||.+| 
T Consensus       165 -~~~~i~i~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~-~~~~--~~~~~~~vi~~~S~SK~~g~  238 (387)
T PRK08960        165 -DTVGALVASP-ANPTGTLL-SRDELAALSQALRARGGHLVVDEIYHGLTYGV-DAAS--VLEVDDDAFVLNSFSKYFGM  238 (387)
T ss_pred             -cceEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCC--hhhccCCEEEEeecccccCC
Confidence             2344555555 56777664 78889999999999999999999999875433 2211  122334544   6999998 


Q ss_pred             cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee-eEec
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRG  406 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~v~g  406 (480)
                      .|+|+||+++++++++.+.......+.+.+.+.+.++.++|+. ..+++.++.++.-+..++.+.+..+++++.. ....
T Consensus       239 ~GlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~  317 (387)
T PRK08960        239 TGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEP-ETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQ  317 (387)
T ss_pred             cccEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCC
Confidence            8999999999999988876544445667788888888888752 1123333333333333444444444444322 2244


Q ss_pred             cceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY-----GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       407 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~-----~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .|+++|+++....       .....+++.|+ ++||.+.||..|     ++++||+..  .+.+++.+++++|.++++
T Consensus       318 g~~f~~~~~~~~~-------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~--~~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        318 GAFYLYADISAFG-------GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYT--QSLPRLQEAVERIARGLR  386 (387)
T ss_pred             eeEEEEEeccccC-------CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            5778888874310       01355776654 689999987433     368999965  478999999999988764

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=6.4e-26  Score=229.14  Aligned_cols=328  Identities=16%  Similarity=0.157  Sum_probs=223.2

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      +.++++..|...  +| .+|++.+++.+.+...    ..|+.+...+|+++|+++++.+.++|++++|+++++..++...
T Consensus        32 ~~~~~l~~~~~~--~~-~~~~~~~a~~~~~~~~----~~Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~  104 (369)
T PRK08153         32 PFRARIGANESG--FG-PSPSVIAAMREAAAEI----WKYGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLY  104 (369)
T ss_pred             cceeEecCCCCC--CC-CCHHHHHHHHHHHHHh----hcCCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh
Confidence            346788777543  34 5789999998876542    2244444678999999999777788999999999999988865


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                      ..  +++.|++.+++|.+........             |...+.+|.  ... ..|    .+++++.+.   ..+++++
T Consensus       105 ~~--~gd~vlv~~p~y~~~~~~~~~~-------------g~~~~~vp~--~~~-~~~----~~~l~~~~~---~~~~~~i  159 (369)
T PRK08153        105 VE--PGDPVVTSLGAYPTFNYHVAGF-------------GGRLVTVPY--RDD-RED----LDALLDAAR---RENAPLV  159 (369)
T ss_pred             cC--CCCEEEECCCcchHHHHHHHHc-------------CCeEEEeeC--CCC-CCC----HHHHHHHhc---ccCCcEE
Confidence            43  6788999999998766433222             222222221  100 112    344443332   2345556


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcc---eeeeccccc-cCccccc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD---IVTMAKGIG-NGIPLGA  334 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pD---ivt~sK~~g-~G~pig~  334 (480)
                      ++...+|++|.+. +.+.+++|.++|+ +|+++|+||+|..|++.| ....+..  ..++   +.||||.+| +|+|+||
T Consensus       160 ~l~~P~NPtG~~~-~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~-~~~~~~~--~~~~~i~~~SfSK~~g~~GlRiG~  234 (369)
T PRK08153        160 YLANPDNPMGSWH-PAADIVAFIEALP-ETTLLVLDEAYCETAPAG-AAPPIDT--DDPNVIRMRTFSKAYGLAGARVGY  234 (369)
T ss_pred             EEeCCCCCCCCCC-CHHHHHHHHHhCC-CCcEEEEeCchhhhcCcc-cchhhhh--cCCCEEEEecchHhccCcchheee
Confidence            5533456667665 6677777777776 499999999999887655 2222211  2234   348999999 8999999


Q ss_pred             cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                      +++++++++.+....  .+++.|+++++++.++|+   ++++.++.++..+..++.+.+..++.+. ......|.+++++
T Consensus       235 ~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g~-~~~p~~~~f~~~~  308 (369)
T PRK08153        235 AIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANGL-TPLPSATNFVAID  308 (369)
T ss_pred             eecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCcCcEEEEE
Confidence            999999998776543  357789999999998885   4556666777666777777666655553 2335567777776


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCceee-ccCc-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVG-KGGF-YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~-~~~~-~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +..+       ......+.+.|.++||.+. ++.. ..+++||+.   .++++++.++++|++++..
T Consensus       309 ~~~~-------~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~---~~~~~~~~~~~al~~~~~~  365 (369)
T PRK08153        309 CGRD-------GAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSC---GPDEELDLFAEALPEALEA  365 (369)
T ss_pred             CCCC-------cccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHHH
Confidence            5311       1235678888999999996 4322 246899993   3899999999999998754

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=1.5e-25  Score=226.97  Aligned_cols=336  Identities=15%  Similarity=0.092  Sum_probs=221.8

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC--------CCCCEEEEeCCHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--------GNLKVVFFTNSGTEA  170 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~--------~~~~~v~f~~sGseA  170 (480)
                      ..++|+..|....   ..+|.+.+++.+.+..... ...|+.....+|++.|++++.        .+.++|++|+|++++
T Consensus        28 ~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~a  103 (374)
T PRK02610         28 IQLDRLDTNEFPY---DLPPDLKQKLAWLYQQGIE-SNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDEL  103 (374)
T ss_pred             cceeEecCCCCCC---CCCHHHHHHHHHHHhhccc-ccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHH
Confidence            4689988887643   3568999999987665311 123555566778888887765        456789999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +..++..... .+.+.|++.+++|.++...+...             |...+.++.. ...|+.|    .++++++++..
T Consensus       104 l~~~~~~~~~-~g~~~Vlv~~P~y~~~~~~~~~~-------------g~~~~~~~~~-~~~~~~d----~~~l~~~~~~~  164 (374)
T PRK02610        104 IRSLLIATCL-GGEGSILVAEPTFSMYGILAQTL-------------GIPVVRVGRD-PETFEID----LAAAQSAIEQT  164 (374)
T ss_pred             HHHHHHHHcC-CCCCeEEEcCCChHHHHHHHHHc-------------CCEEEEecCC-cccCCCC----HHHHHHHHHhh
Confidence            9877764332 23347999999998766554333             2333333321 1123334    56777777531


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cC
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NG  329 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G  329 (480)
                      ...++++|++.+.+|++|.+. +.+.+++|.++|  +++++|+||+|..|.... ............-+-||||.+| .|
T Consensus       165 ~~~~~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~-~~~~~~~~~~~ivi~SfSK~~g~~G  240 (374)
T PRK02610        165 QNPPVRVVFVVHPNSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQTT-LVGELAQHPNWVILRTFSKAFRLAA  240 (374)
T ss_pred             cCCCceEEEEeCCCCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCccc-hHHHHhcCCCEEEEEecchhccCcc
Confidence            123677777666688888875 677788888877  499999999999874221 1111111111122448999997 79


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccce
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF  409 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  409 (480)
                      +|+||+++++++++.+....  ..++.+.+++.++.++|+.  .+.+.+++++..+. ++.+.+..+.++.+......|+
T Consensus       241 lRiG~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~p~~g~  315 (374)
T PRK02610        241 HRVGYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEH--RQELLAAIPEILQE-RDRLYQALQELPQLRVWPSAAN  315 (374)
T ss_pred             cceeeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHH-HHHHHHHHHhCCCcEeCCCcce
Confidence            99999999999988876543  3456788888888887763  23444444444443 3444444444433333456688


Q ss_pred             eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ++|+++...        .....+++.|+++||++.++   .+++||+..   +.+++++++++|+++++.+
T Consensus       316 f~~~~l~~~--------~~~~~~~~~l~~~gi~v~~~---~~~lRls~~---~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        316 FLYLRLSQD--------AALAALHQALKAQGTLVRHT---GGGLRITIG---TPEENQRTLERLQAALTQL  372 (374)
T ss_pred             EEEEeCCCC--------CCHHHHHHHHHHCCEEEEeC---CCeEEEeCC---CHHHHHHHHHHHHHHHhhc
Confidence            888887321        12466788889999999764   468999943   4678999999999988753

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.95  E-value=1.8e-25  Score=224.39  Aligned_cols=337  Identities=14%  Similarity=0.072  Sum_probs=211.8

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc-ccccCChHHHHHHHHHHHhCC--CCCC-EEEEeCCHHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVLYLNHAIADFAEALASKMP--GNLK-VVFFTNSGTEANELAI  175 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~~~~~~~~~l~e~L~~~~~--~~~~-~v~f~~sGseA~~~Al  175 (480)
                      +.+||..|.+..  + ..|++.+++.+........ ...+..+....+++.+.+..+  .+.+ +|++|+|+++|+..++
T Consensus         1 ~~~~~~~g~p~~--~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~   77 (350)
T TIGR03537         1 RLFDFGTGDPKE--P-TPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP   77 (350)
T ss_pred             CeEeccCCCCCC--C-CCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence            467888887653  3 4788999998876542111 111112333444444443333  3455 8999999999999888


Q ss_pred             HHHHhhc-CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCc
Q 011669          176 MMARLYT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (480)
Q Consensus       176 k~ar~~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (480)
                      ..+.... +++.|++.+++|.++...+...             |+..++++......|.-|    .++++++++.    +
T Consensus        78 ~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~~~~----~  136 (350)
T TIGR03537        78 LVFIDPEEDRRRVIFGTPGYPVYERGALFA-------------GGEPTAVKLKKEDGFLLR----LEKVEKSILE----E  136 (350)
T ss_pred             HHHcCCCCCCceEEEcCCCCcchHHHHHhc-------------CCEEEEcccCcccCCccC----HHHHHHhhhh----c
Confidence            7554311 1268999999998766655432             334444433222233223    5677777652    4


Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC--CCcceeeeccccc-cCcc
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG--VVPDIVTMAKGIG-NGIP  331 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~--~~pDivt~sK~~g-~G~p  331 (480)
                      ++++++.+.+|++|.+ .+.+.+++|.++|++||+++|+||+|..+...+ ........+  ...-+.+|||.++ .|+|
T Consensus       137 ~~~i~i~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~g~~GlR  214 (350)
T TIGR03537       137 TKIVWINYPHNPTGAT-APRSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEVGIENVLAFHSLSKRSGMTGYR  214 (350)
T ss_pred             cEEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhcCcCCEEEEeecccccCCcccc
Confidence            6667777678888876 488889999999999999999999998653322 221111111  1222337899997 7999


Q ss_pred             ccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeE
Q 011669          332 LGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (480)
Q Consensus       332 ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  411 (480)
                      +||+++++++.+.+.......+.+.+++.+.++.+++.   .+++.++.++.-+..++.+.+...+++........|+++
T Consensus       215 iG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g~~~~  291 (350)
T TIGR03537       215 SGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYL  291 (350)
T ss_pred             ceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeEEEE
Confidence            99999999988877654333445566677777766664   233333333333333333433333343221222336667


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      |+++...        .....+++.|.++||++.++..|    .+++||+.  ..+++++++++++|++
T Consensus       292 ~~~~~~~--------~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~--~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       292 WVKVPSG--------IDAKDYALRLLENGIVVAPGENFGSGEEGYVRVAL--VPTLEECEEALRLWER  349 (350)
T ss_pred             EEECCCC--------CCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEe--cCCHHHHHHHHHHHhc
Confidence            8877321        12457888899999999987544    46899994  5688999999998875

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.95  E-value=3.7e-25  Score=222.35  Aligned_cols=325  Identities=16%  Similarity=0.158  Sum_probs=216.5

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      ..++||..|...  +|. +|.+.+++.+.+...    ..|+.+...+|+++++++++.+.++|++|+|+++++..+++..
T Consensus        19 ~~~~~l~~~~~~--~~~-p~~~~~a~~~~~~~~----~~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~   91 (354)
T PRK06358         19 NMILDFSANINP--LGV-PESLKQAITENLDKL----VEYPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT   91 (354)
T ss_pred             cceEEecCCCCC--CCC-CHHHHHHHHHHHHhh----hcCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh
Confidence            457899776543  343 789999998877543    2355555678999999999888889999999999999998853


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                          ..+.|++.+++|+.+.......             |...+.+|....+.|..|     +++.+.+.   . +++++
T Consensus        92 ----~~~~v~i~~P~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d-----~~~~~~~~---~-~~~~v  145 (354)
T PRK06358         92 ----KPKKVLILAPTFAEYERALKAF-------------DAEIEYAELTEETNFAAN-----EIVLEEIK---E-EIDLV  145 (354)
T ss_pred             ----CCCcEEEecCChHHHHHHHHHc-------------CCeeEEEeCccccCCCcc-----HHHHHhhc---c-CCCEE
Confidence                2358999999998766544322             222222222111123223     12222232   2 34544


Q ss_pred             -EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC---CCcceeeeccccc-cCcccc
Q 011669          259 -LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG---VVPDIVTMAKGIG-NGIPLG  333 (480)
Q Consensus       259 -i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~---~~pDivt~sK~~g-~G~pig  333 (480)
                       +++| +|++|.+ .+.+.+++|.++|++||+++|+||+|..|...+...-.+...+   ...-+-+|||.+| .|+|+|
T Consensus       146 ~~~~P-~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG  223 (354)
T PRK06358        146 FLCNP-NNPTGQL-ISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLG  223 (354)
T ss_pred             EEeCC-CCCCCCc-cCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhhe
Confidence             5566 6777776 4888899999999999999999999998865541111111112   2222447999999 899999


Q ss_pred             ccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669          334 AVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (480)
Q Consensus       334 ~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  412 (480)
                      |++++ +++++.+....  ..++.+.+++.++.++|+   ++++.++..+..+..++.+.+..++++.+....+.|.++|
T Consensus       224 ~lv~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~  298 (354)
T PRK06358        224 YGLTSNKNLAEKLLQMR--EPWSINTFADLAGQTLLD---DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFIF  298 (354)
T ss_pred             eeecCCHHHHHHHHHhC--CCCcchHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcceEEE
Confidence            99985 67777776543  356778888888888875   2333333222223333334333334433444456788888


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      +.+..           ..++.+.|+++||.+.++..+    .+++||+   ..++++.++++++|++++
T Consensus       299 ~~~~~-----------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        299 FKLEK-----------PIDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLKALEVIL  353 (354)
T ss_pred             EEcCc-----------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence            87631           256888899999999998554    3689999   568899999999999875

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.95  E-value=1.7e-25  Score=228.80  Aligned_cols=349  Identities=14%  Similarity=0.099  Sum_probs=220.4

Q ss_pred             CCEEEeccCCcccc--cCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCC-----CCCCEEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATV--CCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP-----GNLKVVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~--~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~-----~~~~~v~f~~sGse  169 (480)
                      |+.+++|..|.+..  .++ .++.+.+++.+.+... +. ..| +.....+|++.+++++.     .+.++|++++|+++
T Consensus        30 ~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~-~~-~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~  106 (401)
T TIGR01264        30 EKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSG-KY-NGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSH  106 (401)
T ss_pred             CCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhcc-CC-CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHH
Confidence            46788988887642  233 4688999998877652 11 123 34455667777777664     34578999999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      |+..++.....  +++.|++.+++|..+.......             |+..+.++......|+.|    .+.+++.++.
T Consensus       107 al~~~~~~l~~--~gd~v~i~~P~y~~~~~~~~~~-------------g~~v~~~~~~~~~~~~~d----~~~l~~~~~~  167 (401)
T TIGR01264       107 AIEMCIAALAN--AGQNILVPRPGFPLYETLAESM-------------GIEVKLYNLLPDKSWEID----LKQLESLIDE  167 (401)
T ss_pred             HHHHHHHHhCC--CCCEEEEeCCCChhHHHHHHHc-------------CCEEEEeecCCccCCCCC----HHHHHHHhcc
Confidence            99999986643  6778999999997654332222             333333322111123333    5667666642


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-CC--Ccceeeecccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GV--VPDIVTMAKGI  326 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-~~--~pDivt~sK~~  326 (480)
                          +++++++...+|++|.+. +.+.+++|.++|+++|+++|+||+|.+|.+.+..+..+... ..  ..-+-+|||.+
T Consensus       168 ----~~~~v~~~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~  242 (401)
T TIGR01264       168 ----KTAALIVNNPSNPCGSVF-SRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRW  242 (401)
T ss_pred             ----CceEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccC
Confidence                345666655577788764 78889999999999999999999999886555211111111 11  12234799997


Q ss_pred             c-cCccccccccCH------HHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          327 G-NGIPLGAVVTTP------EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       327 g-~G~pig~v~~~~------~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      + .|+|+||+++++      ++++.+..... ..++.+++++.++.+.|+.. .+++.++.++..+..++.+.+..+.++
T Consensus       243 ~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~  320 (401)
T TIGR01264       243 LVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRT-PQEYFDGTLSVLESNAMLCYGALAAVP  320 (401)
T ss_pred             CCccceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7 799999999874      34443332211 24566788888888877531 233444433333333444444444443


Q ss_pred             cee-eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          400 IIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       400 ~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      .+. .....|+++|+++.....   +.......+++.|+ ++||++.++..+  .+++||+.  ..+++++++++++|.+
T Consensus       321 ~~~~~~p~~g~f~~~~~~~~~~---~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~--~~~~~~l~~~l~rl~~  395 (401)
T TIGR01264       321 GLRPVMPSGAMYMMVGIEMEHF---PEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVL--TVPVVMMEEACSRIQE  395 (401)
T ss_pred             CCcccCCCeeeEEEEEeccccc---CCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEE--cCCHHHHHHHHHHHHH
Confidence            233 235568889998743100   11111345666665 789999988654  47999994  5678999999999999


Q ss_pred             HHhhC
Q 011669          476 SLSKM  480 (480)
Q Consensus       476 ~l~~~  480 (480)
                      +++++
T Consensus       396 ~~~~~  400 (401)
T TIGR01264       396 FCERH  400 (401)
T ss_pred             HHhcc
Confidence            88763

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PLN02187 rooty/superroot1

Probab=99.95  E-value=2.4e-25  Score=230.46  Aligned_cols=353  Identities=14%  Similarity=0.091  Sum_probs=217.7

Q ss_pred             CCCCEEEeccCCcccccC-CCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhC------CCCCCEEEEeCCH
Q 011669           96 ENGRRYLDAFGGIATVCC-GHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM------PGNLKVVFFTNSG  167 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~l-Gh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~------~~~~~~v~f~~sG  167 (480)
                      .+++.+|++..|.+...- =-.++++.+++.+.+.... . ..| +.....+|++.+++++      +.+.++|++|+|+
T Consensus        63 ~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~-~-~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~  140 (462)
T PLN02187         63 DVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGK-G-NSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGC  140 (462)
T ss_pred             CCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCC-C-CCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCH
Confidence            346789998887554210 0134678888888776431 1 123 3444556666666654      2456789999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++|+..++.....  +++.|++.+++|.++...+...             |.....++......|+.|    .+++++++
T Consensus       141 ~~al~~~~~~l~~--pGd~Vlv~~P~y~~y~~~~~~~-------------g~~~~~~~l~~~~~~~~d----~~~l~~~~  201 (462)
T PLN02187        141 NQGIEIVFESLAR--PNANILLPRPGFPHYDARAAYS-------------GLEVRKFDLLPEKEWEID----LEGIEAIA  201 (462)
T ss_pred             HHHHHHHHHHhcC--CCCEEEEeCCCCccHHHHHHHc-------------CCEEEEEeCccccCCccC----HHHHHHhc
Confidence            9999999986643  6789999999998764433222             222222222111234444    56777766


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-CC--Ccceeeecc
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GV--VPDIVTMAK  324 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-~~--~pDivt~sK  324 (480)
                      +   .+..+.++++|. |++|.+ .+.+.+++|.++|++||+++|+||+|..|.+.+..+.....+ +.  ..-+-+|||
T Consensus       202 ~---~~~~~v~i~nP~-NPTG~v-~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK  276 (462)
T PLN02187        202 D---ENTVAMVVINPN-NPCGNV-YSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISK  276 (462)
T ss_pred             C---CCcEEEEEeCCC-CCCCCc-cCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchh
Confidence            4   234566667764 667765 488899999999999999999999999875544222122111 11  122337999


Q ss_pred             ccc-cCccccccccC-H-HH---HHhhcCCCccccC--CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 011669          325 GIG-NGIPLGAVVTT-P-EI---AEVLTRRNYFNTF--GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD  396 (480)
Q Consensus       325 ~~g-~G~pig~v~~~-~-~~---~~~l~~~~~~~t~--~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~  396 (480)
                      .++ .|+|+||++++ + .+   ++.+........+  +.+.+.+.++.++|+. ..+++.++.++..+..++.+.+..+
T Consensus       277 ~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~-~~~~~l~~~~~~l~~~r~~l~~~L~  355 (462)
T PLN02187        277 GWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEK-ADKNFFAKKNKILKHNVDLVCDRLK  355 (462)
T ss_pred             hcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            988 79999999984 3 22   2333322222222  4578899998888863 1234444444433333444444444


Q ss_pred             hcCceee--EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHH
Q 011669          397 KYGIIGD--VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDV  472 (480)
Q Consensus       397 ~~~~~~~--v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~  472 (480)
                      +++....  ....|+++|+.+......  ........+.+.+.++||++.||..|  .++|||+  +...++.+++++++
T Consensus       356 ~~~~~~~~~~P~gg~fl~~~l~~~~~~--~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis--~~~~~e~l~~al~r  431 (462)
T PLN02187        356 DIPCVVCPKKPESCTYLLTKLELSLMD--NIKDDIDFCVKLAREENLVFLPGDALGLKNWMRIT--IGVEAHMLEDALER  431 (462)
T ss_pred             hCCCCcCCCCCCEeEEEEeecChhhCC--CCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEE--eCCCHHHHHHHHHH
Confidence            4443322  234468888876321000  00011233455668899999998654  4799999  55679999999999


Q ss_pred             HHHHHhh
Q 011669          473 MDYSLSK  479 (480)
Q Consensus       473 l~~~l~~  479 (480)
                      |.+++++
T Consensus       432 L~~~l~~  438 (462)
T PLN02187        432 LKGFCTR  438 (462)
T ss_pred             HHHHHHH
Confidence            9998864

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.95  E-value=3.1e-25  Score=225.45  Aligned_cols=331  Identities=14%  Similarity=0.085  Sum_probs=213.2

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC------CCCCCEEEEeCCHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM------PGNLKVVFFTNSGTEANE  172 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~------~~~~~~v~f~~sGseA~~  172 (480)
                      .++||..|.+..  + .+|++.+++.+.+...   ...|.. ....+|++.+++++      +.+.++|++|+|+++|+.
T Consensus        30 ~~i~l~~g~p~~--~-~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~  103 (384)
T PRK06348         30 DIIDLSLGDPDL--I-TDESIINAAFEDAKKG---HTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMY  103 (384)
T ss_pred             CcEEcCCCCCCC--C-CCHHHHHHHHHHHhcC---CCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHH
Confidence            468888776543  3 3577877666544321   122322 22344555555443      345678999999999999


Q ss_pred             HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (480)
Q Consensus       173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (480)
                      .++.....  +++.|++.+++|.++...+....             ...+++|......|..|    .+++++.++.   
T Consensus       104 ~~~~~~~~--~gd~vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~~~~---  161 (384)
T PRK06348        104 LALQSILD--PGDEVIIHEPYFTPYKDQIEMVG-------------GKPIILETYEEDGFQIN----VKKLEALITS---  161 (384)
T ss_pred             HHHHHhcC--CCCEEEEeCCCCcchHHHHHHcC-------------CEEEEecCCcCcCCcCC----HHHHHHhhCc---
Confidence            99987643  67889999999987665544332             22223221111122223    5677777642   


Q ss_pred             CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc---ccc-cCCCcceeeeccccc-
Q 011669          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG---FEA-HGVVPDIVTMAKGIG-  327 (480)
Q Consensus       253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~---~~~-~~~~pDivt~sK~~g-  327 (480)
                       ++++|++...+|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+ ....   +.. .+...-+.||||.++ 
T Consensus       162 -~~~~v~l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~l  238 (384)
T PRK06348        162 -KTKAIILNSPNNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKDFAM  238 (384)
T ss_pred             -CccEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhccCC
Confidence             455566656677788764 88899999999999999999999999885433 2111   111 112223448999999 


Q ss_pred             cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHhHHhcCceee
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA----HVVGSYLKERLTALKDKYGIIGD  403 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~----~~~~~~l~~~L~~l~~~~~~~~~  403 (480)
                      .|+|+||+++++++++.+.......+++.+++++.++..+|+.  .+.+.+++    +++.+++.+.|+    .++.+..
T Consensus       239 ~GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~~~L~----~~~~~~~  312 (384)
T PRK06348        239 TGWRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKH--RDTIVPLIKEEFQKRLEYAYKRIE----SIPNLSL  312 (384)
T ss_pred             ccccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHh----cCCCcee
Confidence            8999999999999988877655556788899999998888863  23333333    333333444443    3332322


Q ss_pred             Eec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          404 VRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       404 v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ..+ .|+++|+++....       .....+++.|+ +.||.+.+|..|    .+++||+.  +.+++++++++++|.+.
T Consensus       313 ~~p~gg~~~~~~~~~~~-------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        313 HPPKGSIYAFINIKKTG-------LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC--TVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             ccCCeeEEEEEecccCC-------CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe--cCCHHHHHHHHHHHHhh
Confidence            333 3667788874211       11355777765 579999987544    36899995  56899999999999763

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.95  E-value=2.1e-25  Score=224.40  Aligned_cols=331  Identities=13%  Similarity=0.109  Sum_probs=218.4

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Al  175 (480)
                      .++..++||..|...  +| .+|.+.+|+.+.+...    ..|+.....++++.++++++.+.++|++++|+++++..++
T Consensus        17 ~~~~~~i~l~~~~~~--~~-~p~~~~~a~~~~~~~~----~~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~   89 (356)
T PRK08056         17 ISPDQLLDFSANINP--LG-MPVSLKRAIIDNLDCA----ERYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVV   89 (356)
T ss_pred             CChhhEEEeccccCC--CC-CCHHHHHHHHHHHHhc----ccCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHH
Confidence            356778999877544  44 6789999998877653    2355555789999999999877789999999999999988


Q ss_pred             HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (480)
                      +..   .++ ++++..++|..+...+...             |+..+.+|......|..|     +++++.+.    .++
T Consensus        90 ~~l---~~g-~viv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~~-----~~~~~~~~----~~~  143 (356)
T PRK08056         90 SGL---KPR-RAMIVTPGFAEYRRALQQV-------------GCEIRRYSLREADGWQLT-----DAILEALT----PDL  143 (356)
T ss_pred             HHh---CCC-CEEEeCCCcHHHHHHHHHc-------------CCeEEEEecccccCCCcc-----HHHHHhcc----CCC
Confidence            854   244 5788889886654332221             333333332211223222     22333332    356


Q ss_pred             EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccCCCcceeeeccccc-cCcccc
Q 011669          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTMAKGIG-NGIPLG  333 (480)
Q Consensus       256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~~~pDivt~sK~~g-~G~pig  333 (480)
                      ++|++...+|++|.+ .+++.+++|.++|++||+++|+||+|.+|...+..... +...+...-+.+|||.++ .|+|+|
T Consensus       144 k~v~l~~p~NPTG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG  222 (356)
T PRK08056        144 DCLFLCTPNNPTGLL-PERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLG  222 (356)
T ss_pred             CEEEEeCCcCCCCCC-CCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhhe
Confidence            666666667778875 58889999999999999999999999988544311111 122222222347999999 899999


Q ss_pred             ccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669          334 AVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (480)
Q Consensus       334 ~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  412 (480)
                      |++++ +++++.+....  ..++.+.+++.++.++|+   .+.+.++.++..+..++.+.+..++++.+......|.++|
T Consensus       223 ~~v~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~  297 (356)
T PRK08056        223 YLVNSDDAAVARMRRQQ--MPWSINAFAALAGEVILQ---DRAYQQATWQWLAEEGARFYQALCALPLLTVWPGRANYLF  297 (356)
T ss_pred             eeecCCHHHHHHHHHhC--CCCchhHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCCCcEEE
Confidence            99984 67777665432  446677777777777764   3333333333333333333333333433333455688888


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +.+..+          ...+++.|+++||.+.++..+    .+++||+   ..+.++.+.++++|+++++
T Consensus       298 ~~~~~~----------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        298 LRCERP----------DIDLQRALLTQRILIRSCANYPGLDSRYYRVA---IRSAAENERLLAALRNVLT  354 (356)
T ss_pred             EEcCCC----------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---EcCHHHHHHHHHHHHHHHc
Confidence            876321          346788889999999987544    3689999   3478999999999998765

>PLN02483 serine palmitoyltransferase

Probab=99.95  E-value=1.3e-24  Score=226.17  Aligned_cols=335  Identities=16%  Similarity=0.142  Sum_probs=222.1

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc--cc---ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TV---LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~--~~---~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA  170 (480)
                      .+++++|+|.+.... .|+..++.+.+++.+++.+.+..  ..   .+..+...+++++|+++++. .+ .++.++|+.+
T Consensus        97 ~~~~~~~n~~s~~YL-gl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~-~~-ai~~~~G~~a  173 (489)
T PLN02483         97 TKTRRCLNLGSYNYL-GFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK-PA-AIVFGMGYAT  173 (489)
T ss_pred             CCCceEEEeecCCcc-CcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC-Cc-EEEECCHHHH
Confidence            457899999876552 24444677888888887775421  12   23478899999999999974 34 4566778888


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      |..++....  .+++.|++.+++|.+...+ ....            |.....++.       +|    .++++++++..
T Consensus       174 n~~~i~al~--~~Gd~Vi~d~~~h~s~~~~-~~~~------------Ga~v~~~~~-------~d----~~~le~~l~~~  227 (489)
T PLN02483        174 NSTIIPALI--GKGGLIISDSLNHNSIVNG-ARGS------------GATIRVFQH-------NT----PSHLEEVLREQ  227 (489)
T ss_pred             HHHHHHHhC--CCCCEEEEcchhhHHHHHH-HHHc------------CCeEEEEeC-------CC----HHHHHHHHHhh
Confidence            887776543  3667788777777664433 2222            222222221       23    24444444311


Q ss_pred             ----C-----CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC--ccccCCCcccccccCCC---
Q 011669          251 ----T-----SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGVV---  316 (480)
Q Consensus       251 ----~-----~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg--fgr~G~~~~~~~~~~~~---  316 (480)
                          .     +.....|++|++.++.|.+.+    +++|.++|++||+++|+||+|+-  +|++| .. ..+..++.   
T Consensus       228 i~~~~p~t~~p~~k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G-~g-~~~~~~v~~~~  301 (489)
T PLN02483        228 IAEGQPRTHRPWKKIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTG-RG-VCELLGVDPAD  301 (489)
T ss_pred             hhccccccccCCceEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCC-Cc-hHHhcCCCccc
Confidence                1     112458889999999998876    99999999999999999999972  34444 21 23344443   


Q ss_pred             ccee--eeccccccCccccccccCHHHHHhhcCCCccccCC--CcHHHHHHHHHHHHHhhhh-------HHHHHHHHHHH
Q 011669          317 PDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGHAVLKVIQKD-------KLQNNAHVVGS  385 (480)
Q Consensus       317 pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~--~~~~~~aaa~a~L~~i~~~-------~~~~~~~~~~~  385 (480)
                      .|++  ||||++|+  +.||+++++++++.+.......+++  .+|..++++.++|+.+..+       +..++++++.+
T Consensus       302 ~dI~~~SfSKs~g~--~GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~  379 (489)
T PLN02483        302 VDIMMGTFTKSFGS--CGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSN  379 (489)
T ss_pred             CcEEEEecchhccc--CceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHH
Confidence            3555  89999984  2288999999999887654433343  4667777778888876522       34566777777


Q ss_pred             HHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCCC
Q 011669          386 YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPLC  460 (480)
Q Consensus       386 ~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~  460 (480)
                      ++++.|+++  .+....  ...+.+.++.+..        ......+.+.|+++||.+.+.+.     ..+.+||+++..
T Consensus       380 ~l~~~L~~~--G~~v~~--~~~sp~~~l~l~~--------~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~  447 (489)
T PLN02483        380 FFRSELQKM--GFEVLG--DNDSPVMPIMLYN--------PAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISAS  447 (489)
T ss_pred             HHHHHHHHC--CCcccC--CCCCCEEEEEECC--------HHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCC
Confidence            788877775  222111  1223455555422        12355788899999999986432     126799999999


Q ss_pred             CCHHHHHHHHHHHHHHHhh
Q 011669          461 FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       461 ~t~~~id~~l~~l~~~l~~  479 (480)
                      +|++||++++++|+++++.
T Consensus       448 ~t~edId~~l~~L~~~~~~  466 (489)
T PLN02483        448 HSREDLIKALEVISEVGDL  466 (489)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            9999999999999998754

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.95  E-value=2.8e-25  Score=227.44  Aligned_cols=352  Identities=15%  Similarity=0.087  Sum_probs=212.5

Q ss_pred             eCCCCEEEeccCCcccc--cCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhC------CCCCCEEEEeC
Q 011669           95 DENGRRYLDAFGGIATV--CCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM------PGNLKVVFFTN  165 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~--~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~------~~~~~~v~f~~  165 (480)
                      ..+|+..|+|..|.+..  .+ -.+|.+.+++.+.+....  ...| +.....+|++.+++++      +.+.++|++|+
T Consensus        28 ~~~~~~~i~l~~G~p~~~~~~-~~p~~~~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~  104 (409)
T PLN00143         28 EDDHRLAISFGFGDPSCFECF-RTTNIAEDAIVEAVRSAK--FNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTL  104 (409)
T ss_pred             cCCCCceeeCCCCCCCCCCCC-CCCHHHHHHHHHHHhCcC--CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEec
Confidence            45678899999887751  12 257888899988776531  1123 2333444555555544      34567899999


Q ss_pred             CHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHH
Q 011669          166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD  245 (480)
Q Consensus       166 sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~  245 (480)
                      |+++|+..+++....  +++.|++.+++|.++.......             |.....++......|..|    .+++++
T Consensus       105 G~~~al~~~~~~l~~--~gd~v~v~~P~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~  165 (409)
T PLN00143        105 GCKHAAEIIIKVLAR--PEANILLPRPGFPDVETYAIFH-------------HLEIRHFDLLPEKGWEVD----LDAVEA  165 (409)
T ss_pred             ChHHHHHHHHHHHcC--CCCEEEEcCCCCcCHHHHHHHc-------------CCEEEEEeccCCCCCcCC----HHHHHH
Confidence            999999999986543  6789999999998765443322             222222221111123223    567777


Q ss_pred             HHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC---CCcceeee
Q 011669          246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG---VVPDIVTM  322 (480)
Q Consensus       246 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~---~~pDivt~  322 (480)
                      +++   .+..+.++++| +|++|.+. +.+.+++|.++|++||+++|+||+|..|...+..+.......   ...-+-+|
T Consensus       166 ~~~---~~~~~~~~~nP-~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~Sf  240 (409)
T PLN00143        166 IAD---ENTIAMVIINP-GNPCGSVY-SYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSI  240 (409)
T ss_pred             hcc---cCCEEEEEECC-CCCCCCcc-CHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccc
Confidence            664   23456666776 66777664 888899999999999999999999998865542111111111   12223479


Q ss_pred             ccccc-cCccccccccC--HHHH------HhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 011669          323 AKGIG-NGIPLGAVVTT--PEIA------EVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       323 sK~~g-~G~pig~v~~~--~~~~------~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~  393 (480)
                      ||.++ .|+|+||++++  +.+.      +.+........+ .+.+++.++.++|+.- .+.+.++..+..+..++.+.+
T Consensus       241 SK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~  318 (409)
T PLN00143        241 SKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKT-TEDFFSKTINILRAALAFCYD  318 (409)
T ss_pred             hhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHH
Confidence            99977 79999999983  3332      222222222223 4678888888777521 122222222222222222222


Q ss_pred             hHHhcCcee--eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHH
Q 011669          394 LKDKYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       394 l~~~~~~~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~  469 (480)
                      ...+++...  .....|+++|+++......  ........+.+.+.++||++.||..|  .+++||+.  ..++++++++
T Consensus       319 ~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~--~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~--~~~~~~l~~a  394 (409)
T PLN00143        319 KLKEIPCIMCPQKAEGAFFALVKLNLLLLE--DIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITF--AVEQSSLEDG  394 (409)
T ss_pred             HHhcCCCCCCCCCCCeeEEEEEecchhhcC--CCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEE--cCCHHHHHHH
Confidence            222333222  1233478889988421000  00001233345567899999998654  47899994  5679999999


Q ss_pred             HHHHHHHHhh
Q 011669          470 VDVMDYSLSK  479 (480)
Q Consensus       470 l~~l~~~l~~  479 (480)
                      +++|.+++++
T Consensus       395 l~rl~~~l~~  404 (409)
T PLN00143        395 LGRLKSFCGR  404 (409)
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.95  E-value=2.6e-25  Score=226.30  Aligned_cols=336  Identities=14%  Similarity=0.111  Sum_probs=210.2

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCC-EEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLK-VVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~-~v~f~~sGse  169 (480)
                      |..++|+..|....   ..++.+.+++.+.+....  ...|.. ....+|++++++++    +  .+.+ .|++|+|+++
T Consensus        30 ~~~~i~l~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~  104 (385)
T PRK09276         30 GVDVISLGIGDPDL---PTPDHIIEAMCKAVEDPE--NHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKE  104 (385)
T ss_pred             CCCEEEecCCCCCC---CCCHHHHHHHHHHHhCCC--CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence            45578888886553   356889999988776421  122332 22345555555543    3  2334 5888999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      ++..+++....  +++.|++.+++|.++...+...             |...+.+|......|..|    .+++++.+. 
T Consensus       105 ~i~~~~~~~~~--~gd~Vl~~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~g~~~d----~~~l~~~~~-  164 (385)
T PRK09276        105 GIAHIPLAFVN--PGDVVLVPDPGYPVYKIGTIFA-------------GGEPYFMPLKEENGFLPD----LDAIPEDVA-  164 (385)
T ss_pred             HHHHHHHHhCC--CCCEEEEcCCCCcChHHHHHHc-------------CCEEEEEecCCCCCCcCC----HHHHHHhcc-
Confidence            99999886643  6789999999997765443322             222232222111122223    455655553 


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC---cccccc-cCCCcceeeeccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFEA-HGVVPDIVTMAKG  325 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~---~~~~~~-~~~~pDivt~sK~  325 (480)
                         .++++|++.+.+|++|.+ .+.+.+++|.++|++||+++|+||+|..|...+..   +..++. .+....+.+|||.
T Consensus       165 ---~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  240 (385)
T PRK09276        165 ---KKAKLMFINYPNNPTGAV-ADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKT  240 (385)
T ss_pred             ---ccceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhh
Confidence               256667776567778876 48888999999999999999999999887544311   111111 2233455689999


Q ss_pred             cc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       326 ~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                      +| .|+|+||+++++++++.+.........+.+++.+.++.++|+.  .+.+.+++++..+..++.+.+..++++. ...
T Consensus       241 ~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~  317 (385)
T PRK09276        241 YNMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG--PQEVVEELRKIYQERRDILVEGLRKLGL-EVE  317 (385)
T ss_pred             cCCcchhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccc
Confidence            98 7999999999999988876543333344566777777777752  2334344333333333434333333332 222


Q ss_pred             ec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          405 RG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       405 ~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      .+ .|+++|+.+...        .....+.+.|+ ++||.+.++..+    .+++||+.  ..+++++.+++++|.+
T Consensus       318 ~~~~~~~~~v~~~~~--------~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~l~~  384 (385)
T PRK09276        318 PPKATFYVWAPVPKG--------YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIAL--TVPDERIEEAVERIKK  384 (385)
T ss_pred             CCCcceEEEEECCCC--------CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEe--CCCHHHHHHHHHHHhh
Confidence            23 356678876321        12456777765 579999987433    36899995  4688899999988864

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.95  E-value=3.1e-25  Score=220.35  Aligned_cols=324  Identities=19%  Similarity=0.232  Sum_probs=230.9

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC-CCCCEEEEeCCHHHHHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP-GNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~-~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      ..+|+.++...  +| .+|++.+++.+.++.+    ..|+.+...++.+++++++. ...+.|+.+||.+|.++..+++.
T Consensus        23 ~~i~LssNenP--~g-p~~~~~~~~~~~~~~~----~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~   95 (356)
T COG0079          23 GIIKLSSNENP--YG-PPPKVIEAIRAALDKL----NRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF   95 (356)
T ss_pred             cceeecCCCCC--CC-CCHHHHHHHHHHHHhh----ccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh
Confidence            68898888754  44 4589999998888754    56888889999999999998 66789999999999999999987


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                      ..  +++.|++..++|.-+...+...             |...+..|..  . |..|    .+.+.+.+.   .+....+
T Consensus        96 ~~--~gd~vl~~~Ptf~~Y~~~a~~~-------------g~~~~~v~~~--~-~~~d----~~~~~~~~~---~~~~lv~  150 (356)
T COG0079          96 VE--PGDTVLIPEPTFSMYEIAAQLA-------------GAEVVKVPLK--E-FRLD----LDAILAAIR---DKTKLVF  150 (356)
T ss_pred             hc--CCCEEEEcCCChHHHHHHHHhc-------------CCeEEEeccc--c-cccC----HHHHHHhhh---cCCCEEE
Confidence            65  5689999999996555544433             3332222221  1 3334    344444443   2123455


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee---eeccccc-cCccccc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGA  334 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv---t~sK~~g-~G~pig~  334 (480)
                      +++|+|+ +|... +.+.++++.+.|.+ ++++|+||+|..|...  ..  .....-.++++   ||||++| +|+|+||
T Consensus       151 i~nPNNP-TG~~~-~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~--~~--~~l~~~~~nlivlRTfSKa~gLAGlRlGy  223 (356)
T COG0079         151 LCNPNNP-TGTLL-PREELRALLEALPE-GGLVVIDEAYIEFSPE--SS--LELLKYPPNLIVLRTFSKAFGLAGLRVGY  223 (356)
T ss_pred             EeCCCCC-CCCCC-CHHHHHHHHHhCCC-CcEEEEeCchhhcCCc--hh--hhhccCCCCEEEEEecHHhhhcchhceee
Confidence            5556555 55443 66667777777777 9999999999999651  22  12212223343   8999999 8999999


Q ss_pred             cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                      +++++++++.+....  ..|+.|.++++++.++|+.   .++.+...+....-+++|.+...+++......+.++|+.++
T Consensus       224 ~ia~~~~i~~l~~vr--~p~~v~~~a~~aa~aal~~---~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv~  298 (356)
T COG0079         224 AIANPELIAALNKVR--PPFNVSSPALAAAIAALRD---ADYLEESVERIREERERLYAALKALGLFGVFPSQANFVLVR  298 (356)
T ss_pred             ccCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHccc---HHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEEE
Confidence            999999999988754  7788899999999998863   34555555555555566665555556222456668888887


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +..        .. ...+.+.|+++||+++.+..   ..+++||+   .-|+++.+.++++|.++++.
T Consensus       299 ~~~--------~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~~ll~AL~~~~~~  354 (356)
T COG0079         299 VPD--------AE-AAALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEENDRLLAALREVLKG  354 (356)
T ss_pred             CCC--------cc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHHHHHHHHHHHHhc
Confidence            632        22 45788999999999998743   34699999   66999999999999998764

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.95  E-value=5.7e-25  Score=225.53  Aligned_cols=353  Identities=13%  Similarity=0.042  Sum_probs=223.8

Q ss_pred             EEeCCCCEEEeccCCccccc--CCCCCHHHHHHHHHHHHhccccccccCCh-HHHHHHHHHHHhCC------------CC
Q 011669           93 LFDENGRRYLDAFGGIATVC--CGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP------------GN  157 (480)
Q Consensus        93 l~d~dG~~ylD~~~g~~~~~--lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~l~e~L~~~~~------------~~  157 (480)
                      +.+..|+.+|||..|.+...  + ..++.+.+++.+.+....  ...|... ...+|++.|++++.            .+
T Consensus        27 ~~~~~~~~~i~l~~g~p~~~~~~-~p~~~~~~a~~~~~~~~~--~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~  103 (412)
T PTZ00433         27 KPSPSPKSIIKLSVGDPTLDGNL-LTPAIQTKALVEAVDSQE--CNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIK  103 (412)
T ss_pred             ccCCCCCCeeecCCcCCCCcCCC-CCCHHHHHHHHHHhhcCC--CCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCC
Confidence            44578899999999987531  2 257889999988776421  1223322 34556666665542            34


Q ss_pred             CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChH
Q 011669          158 LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGE  237 (480)
Q Consensus       158 ~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~  237 (480)
                      .++|++|+|+++|+..+++....  +++.|++.+++|..+...+...             |+....+|......|+.|  
T Consensus       104 ~~~i~it~G~~~al~~~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~i~~~~~~~~~~d--  166 (412)
T PTZ00433        104 KDNVVLCSGVSHAILMALTALCD--EGDNILVPAPGFPHYETVCKAY-------------GIEMRFYNCRPEKDWEAD--  166 (412)
T ss_pred             hhhEEEeCChHHHHHHHHHHhcC--CCCEEEEccCCcccHHHHHHHc-------------CCEEEEEecCccccCcCC--
Confidence            67899999999999999987643  6788999999998765443322             222222222111123333  


Q ss_pred             HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC-C-
Q 011669          238 MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG-V-  315 (480)
Q Consensus       238 ~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~-~-  315 (480)
                        .+++++.++.    ++++|++...+|++|.+. +.+.+++|.++|++||+++|+||+|.+|.+.+..+....... . 
T Consensus       167 --~~~l~~~~~~----~~~~i~~~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  239 (412)
T PTZ00433        167 --LDEIRRLVDD----RTKALIMTNPSNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTV  239 (412)
T ss_pred             --HHHHHHHhcc----CceEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCC
Confidence              5667666642    456666655577788664 788899999999999999999999998855442111111111 1 


Q ss_pred             -Ccceeeeccccc-cCcccccccc------CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 011669          316 -VPDIVTMAKGIG-NGIPLGAVVT------TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL  387 (480)
Q Consensus       316 -~pDivt~sK~~g-~G~pig~v~~------~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l  387 (480)
                       ..-+-+|||.++ .|+|+||+++      .+++++.+.... ..+++.+++.+.++.+.|..- .+.+.++.++..+..
T Consensus       240 ~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~  317 (412)
T PTZ00433        240 PRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNT-PQEHLEQIVAKLEEG  317 (412)
T ss_pred             ceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcC-cHHHHHHHHHHHHHH
Confidence             112337999996 7999999997      245666554422 234678889888888877531 234444444443344


Q ss_pred             HHHHHHhHHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC--CCEEEEeCCCCCCH
Q 011669          388 KERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY--GNVFRITPPLCFTK  463 (480)
Q Consensus       388 ~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~  463 (480)
                      ++.+.+..+++..+..+.. .|+++|+.+......   ......++++.|+ ++||++.++..|  .+++||+.  ...+
T Consensus       318 r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~---~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~--~~~~  392 (412)
T PTZ00433        318 AMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFR---DIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTI--SRPV  392 (412)
T ss_pred             HHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcC---CCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEe--cCCH
Confidence            4444444433322322333 477888887421000   0001356777776 579999998655  47899995  4568


Q ss_pred             HHHHHHHHHHHHHHhh
Q 011669          464 EDADYLVDVMDYSLSK  479 (480)
Q Consensus       464 ~~id~~l~~l~~~l~~  479 (480)
                      +++++++++|.++++.
T Consensus       393 e~l~~al~~l~~~~~~  408 (412)
T PTZ00433        393 EVLREAVERIKAFCER  408 (412)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

>PRK08068 transaminase; Reviewed

Probab=99.95  E-value=2.9e-25  Score=226.18  Aligned_cols=338  Identities=12%  Similarity=0.030  Sum_probs=210.0

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC----C--CCCC-EEEEeCCHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNLK-VVFFTNSGT  168 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~----~--~~~~-~v~f~~sGs  168 (480)
                      .|..+|||..|.+..   +.+|.+.+++.+.+....  ...|. .....+|++++++++    +  .+.+ +|++|+|++
T Consensus        30 ~~~~~i~l~~~~p~~---~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~  104 (389)
T PRK08068         30 EGHDVINLGQGNPDQ---PTPEHIVEALQEAAENPA--NHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGK  104 (389)
T ss_pred             cCCCeEEecCCCCCC---CCCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcH
Confidence            344678988876543   567899999988776421  12232 333455666666554    3  3445 799999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +++..++.....  +++.|++.+++|..+...+...             |+..+.+|......|..|    .+++++.+.
T Consensus       105 ~~l~~~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~i~~~~~~~~~~d----~~~l~~~~~  165 (389)
T PRK08068        105 AGLVELPQCLMN--PGDTILVPDPGYPDYLSGVALA-------------RAQFETMPLIAENNFLPD----YTKIPEEVA  165 (389)
T ss_pred             HHHHHHHHHhCC--CCCEEEEcCCCCcchHHHHHhc-------------CCEEEEeecccccCCCCC----HHHHHHhcc
Confidence            999988775433  6788999999997665443322             333333332111123223    456666553


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccC---CCcceeeecc
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHG---VVPDIVTMAK  324 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~---~~pDivt~sK  324 (480)
                          .++++|++...+|++|.+ .+.+.+++|.++|++||+++|+||+|..|...+..... ....+   ....+.+|||
T Consensus       166 ----~~~~~v~l~~P~NPTG~~-~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK  240 (389)
T PRK08068        166 ----EKAKLMYLNYPNNPTGAV-ATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSK  240 (389)
T ss_pred             ----ccceEEEEECCCCCCCCc-CCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchh
Confidence                245555555346777776 58889999999999999999999999887655411111 12222   2233448999


Q ss_pred             ccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee
Q 011669          325 GIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (480)
Q Consensus       325 ~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  403 (480)
                      .+| .|+|+||+++++++++.+.........+.++..+.++.++|.  +.+.+.+..++..+..++.+.+...++++ ..
T Consensus       241 ~~g~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~r~~~~~~L~~~g~-~~  317 (389)
T PRK08068        241 TFNMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALL--SDQSCVAELVARYESRRNAFISACREIGW-EV  317 (389)
T ss_pred             ccCCccceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHCCC-cc
Confidence            998 899999999999999887654333334444556666666663  12233333333323333333333333342 22


Q ss_pred             Eecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          404 VRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       404 v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      .++. |+++|+.+...        .....+.+.|++ +||++.++..+    .+++||+.  ..+++.+.+++++|.++
T Consensus       318 ~~~~g~~~~~v~~~~~--------~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~  386 (389)
T PRK08068        318 DAPKGSFFAWMPVPKG--------YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGL--LTDEERLREAVERIGKL  386 (389)
T ss_pred             cCCCeeEEEEEECCCC--------CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEE--cCCHHHHHHHHHHHHHh
Confidence            3344 45678877321        124668888876 69999987432    36899995  46788888888888763

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.94  E-value=2.4e-25  Score=223.28  Aligned_cols=318  Identities=17%  Similarity=0.200  Sum_probs=212.8

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      .+.|||..|...  ++ .+|++++|+.+++...    ..|..+...++++.++++++.+.+++++++|+++++..+++..
T Consensus        19 ~~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~----~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l   91 (346)
T TIGR01141        19 KEVIKLNSNENP--FG-PPPKAKEALRAEADKL----HRYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF   91 (346)
T ss_pred             CceEEccCCCCC--CC-CCHHHHHHHHHhHHHh----hcCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh
Confidence            479999988764  33 5799999999877543    2234444578999999999766678999999999998888765


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                      .  .+++.|++.+++|..+......             .|+....+|...  .+..|    .+++++.+.    +++++|
T Consensus        92 ~--~~gd~v~~~~p~y~~~~~~~~~-------------~g~~~~~~~~~~--~~~~d----~~~l~~~~~----~~~~~v  146 (346)
T TIGR01141        92 L--EPGDAVLVPPPTYSMYEISAKI-------------HGAEVVKVPLDE--DGQLD----LEDILVAID----DKPKLV  146 (346)
T ss_pred             c--CCCCEEEEcCCCHHHHHHHHHH-------------cCCeEEEeccCC--CCCCC----HHHHHHhcC----CCCCEE
Confidence            3  3568899999988543322111             133333332211  12223    566666543    357777


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHh--CCEEEEcccccCccccCCCcccccccCCCccee---eeccccc-cCccc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPL  332 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~--gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv---t~sK~~g-~G~pi  332 (480)
                      +++..++++|.+.+    ++++.++|+.+  |+++|+||+|.+|...+ ...  ......++++   ++||.++ +|+|+
T Consensus       147 ~l~~p~NptG~~~~----~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~-~~~--~~~~~~~~~i~~~S~sK~~g~~G~r~  219 (346)
T TIGR01141       147 FLCSPNNPTGNLLS----RSDIEAVLERTPEDALVVVDEAYGEFSGEP-STL--PLLAEYPNLIVLRTLSKAFGLAGLRI  219 (346)
T ss_pred             EEeCCCCCCCCCCC----HHHHHHHHHhCCCCcEEEEECchhhhcCCc-cHH--HHHhhCCCEEEEehhhHhhhchhhhc
Confidence            77777888898875    55666666655  99999999999775432 221  1111223433   7899997 69999


Q ss_pred             cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeE
Q 011669          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (480)
Q Consensus       333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  411 (480)
                      ||+++++++.+.+....  .+++.+++++.++.+.++... -+...++++++.+++++.|+    +++.+......|.++
T Consensus       220 G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~----~~~g~~~~~~~g~~~  293 (346)
T TIGR01141       220 GYAIANAEIIDALNKVR--APFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLK----KLPGLEVYPSDANFV  293 (346)
T ss_pred             eeeecCHHHHHHHHhcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH----hcCCCEECCCcCCEE
Confidence            99999999988877543  356778888888888775432 12233344444444444443    333333344467888


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---CCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---GNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      ++++..          ...++.+.|.++||.+.++..+   .+++|+++.   +++++++++++|+
T Consensus       294 ~~~~~~----------~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       294 LIRFPR----------DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR  346 (346)
T ss_pred             EEecCC----------CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence            887632          1467888899999999987654   578999943   8999999998873

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.94  E-value=4.2e-25  Score=224.54  Aligned_cols=337  Identities=14%  Similarity=0.074  Sum_probs=211.9

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCC-EEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLK-VVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~-~v~f~~sGse  169 (480)
                      |..++||..|...  ++ .++.+.+++.+.+....  ...|.. ....+|++.+++++    +  .+.+ +|++|+|+++
T Consensus        28 ~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~  102 (383)
T TIGR03540        28 GVDVISLGIGDPD--LP-TPKHIVEALCKAAENPE--NHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKE  102 (383)
T ss_pred             CCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHH
Confidence            5577888888654  33 36889999988775421  122332 22344555555443    2  2334 6889999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      ++..+++....  +++.|++.+++|.++.......             |...+++|......|..|    .+++++.+. 
T Consensus       103 ~l~~~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~-------------G~~v~~v~~~~~~g~~~d----~~~l~~~~~-  162 (383)
T TIGR03540       103 GIAHIPLAFVN--PGDIVLVPDPGYPVYRIGTLFA-------------GGEPYEMPLKEENGFLPD----FDAIPEDIA-  162 (383)
T ss_pred             HHHHHHHHhCC--CCCEEEEeCCCCcchHHHHHhc-------------CCEEEEEecCcccCCccC----HHHHHhhcc-
Confidence            99999886543  6788999999998765543332             233333332111122222    456666553 


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc---ccc-cCCCcceeeeccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG---FEA-HGVVPDIVTMAKG  325 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~---~~~-~~~~pDivt~sK~  325 (480)
                         +++++|++...+|++|.+ ++.+.+++|.++|++||+++|+||+|..+...+.....   .+. .+....+.+|||.
T Consensus       163 ---~~~~~v~i~~P~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~  238 (383)
T TIGR03540       163 ---KKAKLMFINYPNNPTGAV-APLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKT  238 (383)
T ss_pred             ---ccceEEEEeCCCCCcCcc-CCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccc
Confidence               256667666557788876 48889999999999999999999999877544311111   111 1223445689999


Q ss_pred             cc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       326 ~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                      +| .|+|+||+++++++++.+.........+.+.+.+.++.++|+..  +++.+.+++..+..++.+.+..+++++....
T Consensus       239 ~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  316 (383)
T TIGR03540       239 YNMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP--QDVVKEIRKIYQRRRDLLLEALKKIGIDVEK  316 (383)
T ss_pred             cCCccceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEecC
Confidence            98 79999999999999887765433334455667777777777531  3444433333333344444444444422222


Q ss_pred             eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      ...|+++|+.+...        .....+++.|+ ++||.+.++..+    .+++||+.  ..+++++.+++++|.+
T Consensus       317 ~~~~~~~~~~l~~~--------~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       317 PKATFYVWVPVPEG--------YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISL--TVPDERLEEAVARIKK  382 (383)
T ss_pred             CCcceEEEEECCCC--------CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEe--cCCHHHHHHHHHHHhh
Confidence            23466678887321        12456777764 689999987433    35899995  4678899999888864

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09148 aminotransferase; Validated

Probab=99.94  E-value=3.1e-25  Score=226.90  Aligned_cols=345  Identities=14%  Similarity=0.075  Sum_probs=218.1

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCC-EEEEeCCHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLK-VVFFTNSGT  168 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~-~v~f~~sGs  168 (480)
                      .|+.+|||..|.+..  + .++.+.+++.+.+...  ....|.. ....+|++.+++.+    +  .+.+ +|++|+|++
T Consensus        28 ~~~~~i~l~~~~p~~--~-~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~  102 (405)
T PRK09148         28 AGADIIDLGMGNPDL--P-TPQHIVDKLCETAQDP--RTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSK  102 (405)
T ss_pred             cCCCeEEcCCCCCCC--C-CCHHHHHHHHHHHcCc--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChH
Confidence            467789998776543  3 3678888887766431  1122332 22345555555443    3  2345 799999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +++..+++....  +++.|++.+++|.++.......             |+...++|......|       .+++++.++
T Consensus       103 ~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~-------~~~l~~~~~  160 (405)
T PRK09148        103 EGFANMAQAITA--PGDVILCPNPSYPIHAFGFIMA-------------GGVIRSVPAEPDEEF-------FPALERAVR  160 (405)
T ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCcccHHHHHhc-------------CCEEEEEeCCCCCCC-------ccCHHHHHh
Confidence            999999886643  6788999999998765443322             333333332111111       234555554


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc----CCCcceeeecc
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTMAK  324 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~----~~~pDivt~sK  324 (480)
                      ...+ ++.++++...+|++|.+. +.+.+++|.++|++||+++|+||+|..|...+.........    +....+.+|||
T Consensus       161 ~~~~-~~~~v~l~~P~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK  238 (405)
T PRK09148        161 HSIP-KPIALIVNYPSNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSK  238 (405)
T ss_pred             hccc-cceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccc
Confidence            3323 455555555567777664 88889999999999999999999999875443111111111    22223458999


Q ss_pred             ccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee
Q 011669          325 GIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (480)
Q Consensus       325 ~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  403 (480)
                      .++ .|+|+||+++++++++.+.......+++.+++++.++.+.|+.  .+++.++.++..+..++.+.+..++++....
T Consensus       239 ~~~~pGlR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~  316 (405)
T PRK09148        239 TFSMAGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNG--PQDCIAEMRELYKKRRDVLVESFGRAGWDIP  316 (405)
T ss_pred             ccCCcchheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence            999 8999999999999998887654445667788888888887752  2334444433333333444333333443222


Q ss_pred             EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       404 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ....|+++|+++.....     .....++.+.|+ ++||.+.++..|    .+++||+.  ..+++++.+++++|.+++.
T Consensus       317 ~p~~g~f~~~~l~~~~~-----~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~--~~~~~~l~~al~~l~~~l~  389 (405)
T PRK09148        317 PPAASMFAWAPIPEAFR-----HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIAL--VENEQRIRQAARNIKRFLS  389 (405)
T ss_pred             CCCeeEEEEEECCCccC-----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence            24457788888742110     001345666655 789999997543    36899995  4689999999999998875


Q ss_pred             h
Q 011669          479 K  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       390 ~  390 (405)
T PRK09148        390 S  390 (405)
T ss_pred             H
Confidence            4

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.94  E-value=1e-24  Score=218.85  Aligned_cols=328  Identities=20%  Similarity=0.206  Sum_probs=219.6

Q ss_pred             CEEEeccCCcccccCCCC-CHHHHHHHHHHHHhcccccc-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANE  172 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~  172 (480)
                      +.||.|+++.   .|||. ||+|++|+++.+++..+...     ....+...++++.|+++++.  +.++++++|++++.
T Consensus         1 ~~~~~~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~iv~~sg~~a~~   75 (349)
T cd06454           1 KKVLNFCSND---YLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK--EAALVFSSGYAAND   75 (349)
T ss_pred             CCceecccCC---ccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC--CCEEEeccHHHHHH
Confidence            4688887654   57998 99999999999987533111     23467788999999999965  34678899999999


Q ss_pred             HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC-
Q 011669          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-  251 (480)
Q Consensus       173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-  251 (480)
                      .+++.+..  +++.|++.++.| ..........            |+....++.       .|    .++++++++... 
T Consensus        76 ~~~~~~~~--~gd~Vl~~~~~~-~~~~~~~~~~------------g~~~~~~~~-------~~----~~~le~~i~~~~~  129 (349)
T cd06454          76 GVLSTLAG--KGDLIISDSLNH-ASIIDGIRLS------------GAKKRIFKH-------ND----MEDLEKLLREARR  129 (349)
T ss_pred             HHHHHhcC--CCCEEEEehhhh-HHHHHHHHHc------------CCceEEecC-------CC----HHHHHHHHHHhhc
Confidence            88876542  566777766654 3322222111            222222221       12    356777776421 


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--Cccc-ccccCCCccee--eecccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWG-FEAHGVVPDIV--TMAKGI  326 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~~~~-~~~~~~~pDiv--t~sK~~  326 (480)
                      +.++++|+++++++++|.+.+    +++|.++|++||+++|+||+|. +|..+.  .... ........|++  +++|.+
T Consensus       130 ~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  204 (349)
T cd06454         130 PYGKKLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAF  204 (349)
T ss_pred             cCCCeEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcEEEeechhhh
Confidence            246789999999999998765    9999999999999999999996 333221  1110 11111234554  789999


Q ss_pred             ccCccccccccCHHHHHhhcCCCc--cccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceee
Q 011669          327 GNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (480)
Q Consensus       327 g~G~pig~v~~~~~~~~~l~~~~~--~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  403 (480)
                      +.  +.|+++.++++++.+.....  ..+...++..++++.++|+.+.+ ++..+++.++.+++++.|.++  ...... 
T Consensus       205 ~~--~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~-  279 (349)
T cd06454         205 GA--VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL--GFPVGG-  279 (349)
T ss_pred             cc--cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--CCcccC-
Confidence            85  44889999998877654322  22335678888888999987765 566777888888888877764  222211 


Q ss_pred             EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       404 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                       .+.+.+.++.+ .       ......++.+.|+++||.+.+++.     .++++||+++...+++++++++++|+++
T Consensus       280 -~~~~~~~~~~~-~-------~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         280 -SPSHIIPPLIG-D-------DPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             -CCCCcEEEEeC-C-------ChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence             11222222221 1       112356788899999999976432     1468999999889999999999999864

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PLN02656 tyrosine transaminase

Probab=99.94  E-value=4.8e-25  Score=225.77  Aligned_cols=352  Identities=18%  Similarity=0.116  Sum_probs=217.7

Q ss_pred             CCCCEEEeccCCcccccC-CCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhC----C--CCCCEEEEeCCH
Q 011669           96 ENGRRYLDAFGGIATVCC-GHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM----P--GNLKVVFFTNSG  167 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~l-Gh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~----~--~~~~~v~f~~sG  167 (480)
                      ..|+.+++|..|.+.... -..++.+.+++.+.+....  ...| +.....++++++++++    +  .+.++|++|+|+
T Consensus        28 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~  105 (409)
T PLN02656         28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNK--FNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGC  105 (409)
T ss_pred             ccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCCh
Confidence            367889999988876321 2467899999988776521  1123 2334455555555554    2  345789999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++|+..++....  .+++.|++.+++|..+.......             |+....+|......|..|    .+++++.+
T Consensus       106 ~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~i~~~~~~~~~~d----~~~l~~~~  166 (409)
T PLN02656        106 TQAIDVALSMLA--RPGANILLPRPGFPIYELCAAFR-------------HLEVRYVDLLPEKGWEVD----LDAVEALA  166 (409)
T ss_pred             HHHHHHHHHHHh--CCCCeEEEeCCCCCcHHHHHHHc-------------CCEEEEEeCCCcCCCCCC----HHHHHHHh
Confidence            999999998654  36788999999996543322211             222222221111122223    56677766


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc---cccCCCcceeeecc
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF---EAHGVVPDIVTMAK  324 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~---~~~~~~pDivt~sK  324 (480)
                      +   ++..+++++.| +|++|.+ .+++.+++|.++|++||+++|+||+|.+|.+.+.....+   +......-+-+|||
T Consensus       167 ~---~~~~~v~l~~P-~NPtG~~-~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK  241 (409)
T PLN02656        167 D---QNTVALVIINP-GNPCGNV-YSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSK  241 (409)
T ss_pred             c---cCceEEEEECC-CCCCCCC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccch
Confidence            4   22445555665 6677766 478889999999999999999999999886555211111   11112223447999


Q ss_pred             ccc-cCccccccccC--------HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Q 011669          325 GIG-NGIPLGAVVTT--------PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK  395 (480)
Q Consensus       325 ~~g-~G~pig~v~~~--------~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~  395 (480)
                      .++ .|+|+||++++        +++++.+..... ...+.+.+++.++.++|+.. .+.+.++.++..+..++.+.+..
T Consensus       242 ~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~L  319 (409)
T PLN02656        242 RWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFD-ILGGPATFIQAAVPTILEQT-DESFFKKTINILKQSSDICCDRI  319 (409)
T ss_pred             hccCcceeEEEEEEeCcccccccHHHHHHHHHHHh-hhcCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            977 79999999984        567776654322 12356788899888888631 12333333333333334444433


Q ss_pred             HhcCcee-eEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHH
Q 011669          396 DKYGIIG-DVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       396 ~~~~~~~-~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~  471 (480)
                      +.++... ..++ .|+++|+++......  ........+.+.|.++||++.||..|  .+++||+..  .++++++++++
T Consensus       320 ~~~~~~~~~~~p~gg~~~w~~l~~~~~~--~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~eal~  395 (409)
T PLN02656        320 KEIPCITCPHKPEGSMAVMVKLNLSLLE--DISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEEALG  395 (409)
T ss_pred             hhCCCCcCCcCCCeEEEEEEecchhhcC--CCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHHHHH
Confidence            3443222 1233 467788887321000  00011234556778899999998554  368999954  58999999999


Q ss_pred             HHHHHHhh
Q 011669          472 VMDYSLSK  479 (480)
Q Consensus       472 ~l~~~l~~  479 (480)
                      +|++++.+
T Consensus       396 rl~~~~~~  403 (409)
T PLN02656        396 RIKSFYLR  403 (409)
T ss_pred             HHHHHHHH
Confidence            99998763

>PRK12414 putative aminotransferase; Provisional

Probab=99.94  E-value=4.2e-25  Score=224.50  Aligned_cols=336  Identities=11%  Similarity=0.076  Sum_probs=214.4

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccCChHHHHHHHHHHHhCCCC--C-CEEEEeCCHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMPGN--L-KVVFFTNSGTEANELA  174 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~l~e~L~~~~~~~--~-~~v~f~~sGseA~~~A  174 (480)
                      .+|||..|.+.  ++ .++.+.+++.+.+....  +....+..+...++++.+++.++.+  . ++|++|+||++|+..+
T Consensus        30 ~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~  106 (384)
T PRK12414         30 DALNLSQGAPN--FA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAA  106 (384)
T ss_pred             CeEEcCCCCCC--CC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHH
Confidence            46888887764  33 47889999888665421  1111223355566777766666543  2 4799999999999999


Q ss_pred             HHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCc
Q 011669          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (480)
Q Consensus       175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (480)
                      ++...  .+++.|++.+++|.+........             |...+.+|... ..|..|    .+.+++.++    ++
T Consensus       107 ~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~l~----~~  162 (384)
T PRK12414        107 ISALV--HPGDEVIYFEPSFDSYAPIVRLQ-------------GATPVAIKLSP-EDFRVN----WDEVAAAIT----PR  162 (384)
T ss_pred             HHHhc--CCCCEEEEeCCCccchHHHHHHc-------------CCEEEEEecCc-cccccC----HHHHHhhcC----cc
Confidence            88653  36789999999997654433322             22222222111 112223    566776664    25


Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc-ccCC---Ccceeeeccccc-cC
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE-AHGV---VPDIVTMAKGIG-NG  329 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~-~~~~---~pDivt~sK~~g-~G  329 (480)
                      +++|++...+|++|.+. +++.+++|.++|++||+++|+||+|..|...+.....+. ..+.   ..-+.+|||.+| .|
T Consensus       163 ~~~v~i~~p~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG  241 (384)
T PRK12414        163 TRMIIVNTPHNPSATVF-SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTG  241 (384)
T ss_pred             cEEEEEcCCCCCCCcCC-CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCcc
Confidence            66777766778888764 788899999999999999999999988755442111111 1111   222347999998 89


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec-c
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG-R  407 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-~  407 (480)
                      +|+||+++++++++.+.......+++.+.+++.++.+.|+.-. .....+.+++..+.+.+.|++    ++ +...++ .
T Consensus       242 lRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~g-~~~~~~~g  316 (384)
T PRK12414        242 WRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAG----SR-FELLPSEG  316 (384)
T ss_pred             ceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHh----CC-CeecCCCc
Confidence            9999999999998888765555677888889988887775211 012233344444444444433    33 222333 4


Q ss_pred             ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      |+++|+++....     .......+.+.|.++||.+.|+..|      .+++||+..  .+++++++++++|.+
T Consensus       317 g~~~~~~~~~~~-----~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~~~rl~~  383 (384)
T PRK12414        317 SFFMLARFRHFS-----DESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KDDATLVEGARRLCS  383 (384)
T ss_pred             ceEEEEcccccC-----CCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence            566777763210     0011233445677899999997533      368999954  589999999999864

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.94  E-value=6.2e-25  Score=224.59  Aligned_cols=352  Identities=13%  Similarity=0.100  Sum_probs=220.1

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccCChHHHHHHHHHHHhCCC--CCCEEEEeCCHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEANEL  173 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~l~e~L~~~~~~--~~~~v~f~~sGseA~~~  173 (480)
                      |..++|+..|.+..   ..+|.+.+++.+.+....  +....+..+...++++.+.+.++.  ..++|++|+|+++|+..
T Consensus        32 ~~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~  108 (402)
T PRK06107         32 GRSIVDLTVGEPDF---DTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFL  108 (402)
T ss_pred             cCCEEEcCCCCCCC---CCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence            44578888887654   247889999998876432  122223335556666777666543  45689999999999999


Q ss_pred             HHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       174 Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      +++..  ..+++.|++.+++|.++........+             ..+.++......|..|    .+++++.++   + 
T Consensus       109 ~~~~~--~~~gd~vl~~~p~y~~y~~~~~~~~~-------------~~~~v~~~~~~~~~~~----~~~l~~~~~---~-  165 (402)
T PRK06107        109 ALMAT--LEAGDEVIIPAPYWVSYPDMVLANDG-------------TPVIVACPEEQGFKLT----PEALEAAIT---P-  165 (402)
T ss_pred             HHHHh--cCCCCEEEEecCCCcCHHHHHHHcCC-------------EEEEecCCcccCCCCC----HHHHHhhcC---c-
Confidence            98754  23678899999988776543332211             1111111111122223    466776664   2 


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh-CCEEEEcccccCccccCCCcccccc--cCCCcc---eeeeccccc
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA-GGLCIADEVQAGFARTGSHFWGFEA--HGVVPD---IVTMAKGIG  327 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~tgfgr~G~~~~~~~~--~~~~pD---ivt~sK~~g  327 (480)
                      +++++++...+|++|.+ ++.+.+++|.++|++| |+++|+||+|..+...+..+..+..  .+....   +-+|||.++
T Consensus       166 ~~~~v~l~~p~NPtG~~-~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  244 (402)
T PRK06107        166 RTRWLILNAPSNPTGAV-YSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYA  244 (402)
T ss_pred             CceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhc
Confidence            45555555446777765 4888899999999998 9999999999877554421111111  111122   336799998


Q ss_pred             -cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe-
Q 011669          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-  405 (480)
Q Consensus       328 -~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-  405 (480)
                       .|+|+||+++++++++.+.......+++.+.+.++++..+|+.  .+.+.++.++.-+..++.+.+..++++.+.... 
T Consensus       245 ~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p  322 (402)
T PRK06107        245 MTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNG--DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVP  322 (402)
T ss_pred             CcccceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC
Confidence             8999999999999998887755556677889999998888852  233333333332333333333333333333233 


Q ss_pred             ccceeEEEEEecCCCcCCCCHH---HHHHHHH-HHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKA---ETLYIMD-KMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~---~~~~~~~-~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..|+++|+.+..-.....|...   ....+++ .+.++||.+.+|..|  .+++||+.  ..+++++++++++|.+.+++
T Consensus       323 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~--~~~~e~l~~~l~~l~~~l~~  400 (402)
T PRK06107        323 DGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSI--ATSLETLEEACARIERAVAA  400 (402)
T ss_pred             CcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHh
Confidence            3466778876311000001110   1234554 456789999998665  36899995  46899999999999999876


Q ss_pred             C
Q 011669          480 M  480 (480)
Q Consensus       480 ~  480 (480)
                      +
T Consensus       401 ~  401 (402)
T PRK06107        401 L  401 (402)
T ss_pred             c
Confidence            4

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.94  E-value=5.7e-25  Score=221.84  Aligned_cols=324  Identities=14%  Similarity=0.130  Sum_probs=216.0

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEE-eCCHHHHHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFF-TNSGTEANELA  174 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f-~~sGseA~~~A  174 (480)
                      .+++.++||..|...  +| .+|.+.+++.+.+...    ..|+.+...++++.++++++.+.+++++ +++.++++..+
T Consensus        31 ~~~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~----~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~  103 (361)
T PRK00950         31 IDPESIIKLGSNENP--LG-PSPKAVEAIEKELSKI----HRYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTL  103 (361)
T ss_pred             CCccceEEccCCCCC--CC-CCHHHHHHHHHHHHhh----cCCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHH
Confidence            456789999877643  45 5789999998877653    2344444588999999999776778888 67778888888


Q ss_pred             HHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCc
Q 011669          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (480)
Q Consensus       175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (480)
                      ++...  .+++.|++.+++|..+.......             |+....++..  ..|..|    .+++++.++    .+
T Consensus       104 ~~~~~--~~gd~vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~--~~~~~~----~~~l~~~~~----~~  158 (361)
T PRK00950        104 MRTFI--DPGDEVIIPTPTFSYYEISAKAH-------------GAKPVYAKRE--EDFSLD----VDSVLNAIT----EK  158 (361)
T ss_pred             HHHhc--CCCCEEEEcCCChHHHHHHHHHc-------------CCEEEEeecC--CCCCcC----HHHHHHHhc----cC
Confidence            87653  35678999999886644332211             2323322211  122223    566776664    24


Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccCCCcceeeeccccc-cCccc
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGIPL  332 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~~~pDivt~sK~~g-~G~pi  332 (480)
                      ++++++..+++++|.+.+    .+++.++|+++|+++|+||+|.+|. .+ ..... ...+....+.+|||.+| .|+|+
T Consensus       159 ~~~v~~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~-~~~~~~~~~~~vi~~~S~SK~~g~~GlRi  232 (361)
T PRK00950        159 TKVIFLCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EY-DYTPLALEYDNLIIGRTFSKVFGLAGLRI  232 (361)
T ss_pred             CCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-cc-chHHHHHhcCCEEEEEeehHhhcCchhhc
Confidence            556666566788888877    7889999999999999999998874 22 22111 11222223448999999 79999


Q ss_pred             cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (480)
Q Consensus       333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  412 (480)
                      ||+++++++++.+....  ..++.++++++++.++|+   +.++.++..+..+..++.|.+.   +. +......|.++|
T Consensus       233 G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~---l~-~~~~~~~~~~i~  303 (361)
T PRK00950        233 GYGFVPEWLIDYYMRAK--TPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNE---LP-FKVYPSEANFVL  303 (361)
T ss_pred             chhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhh---cC-eeECCCcceEEE
Confidence            99999999988776533  345577888888877775   3344444444434444444332   22 222344577888


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +.+ ..        ....++++.|.++||++.++..+    .+++||++.   +.+++++++++|+++++
T Consensus       304 ~~~-~~--------~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il~  361 (361)
T PRK00950        304 VDV-TP--------MTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIVE  361 (361)
T ss_pred             EEC-CC--------CCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHhC
Confidence            877 21        01467888899999999886433    358999943   78899999999998763

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.94  E-value=1.2e-24  Score=219.93  Aligned_cols=321  Identities=17%  Similarity=0.181  Sum_probs=212.0

Q ss_pred             EEEeccCCcccccCCC-CCHHHHHHHHHHHHhc--------ccccc----ccCChHHHHHHHHHHHhCCCCCCEEEEeCC
Q 011669          100 RYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRI--------QHSTV----LYLNHAIADFAEALASKMPGNLKVVFFTNS  166 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~--------~~~~~----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~s  166 (480)
                      +++||.++.+   ||+ .||.+.+++.+++.+.        .|...    ...++...+++++|+++++.  +.+++.+|
T Consensus         5 ~~~~~~s~~Y---L~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~--~~~l~~~s   79 (370)
T PRK05937          5 LSIDFVTNDF---LGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA--PEAFIVPS   79 (370)
T ss_pred             ceEEeECCCc---cCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC--CeEEEECC
Confidence            4555554432   333 4799999998888775        22222    12467889999999999975  45688899


Q ss_pred             HHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       167 GseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      |+.||...+..   ..+++++|+.+..+|+.....+.....  ..          +.++.       +|    .++++++
T Consensus        80 G~~a~~~~~~~---~~~~~d~ii~d~~~H~sv~~~~~~~~~--~~----------~~~~~-------~d----~~~l~~~  133 (370)
T PRK05937         80 GYMANLGLCAH---LSSVTDYVLWDEQVHISVVYSLSVISG--WH----------QSFRH-------ND----LDHLESL  133 (370)
T ss_pred             hHHHHHHHHHH---hCCCCCEEEEEhhhhHHHHHHHHHcCC--ce----------EEecC-------CC----HHHHHHH
Confidence            99998643332   235678999999999988887655321  10          11111       23    5678888


Q ss_pred             HHccC--CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-C-ccccCCCcccc--cccCCCccee
Q 011669          247 IDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-G-FARTGSHFWGF--EAHGVVPDIV  320 (480)
Q Consensus       247 i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-g-fgr~G~~~~~~--~~~~~~pDiv  320 (480)
                      ++...  .+++.+|+++++++++|.+.|    +++|.++|+++|+++|+||+|+ | ++.+| ..+..  ...+..+|+.
T Consensus       134 l~~~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g-~g~~~~~~~~~~~~~~~  208 (370)
T PRK05937        134 LESCRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDG-KGFCHSLGYENFYAVLV  208 (370)
T ss_pred             HHhhhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCC-CchHHhhCCCCCcEEEE
Confidence            76421  134667889999999999988    9999999999999999999997 3 45555 21111  1112346788


Q ss_pred             eecccccc-CccccccccCHHHHHhhcC--CCccccCCCcHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhH
Q 011669          321 TMAKGIGN-GIPLGAVVTTPEIAEVLTR--RNYFNTFGGNPVCTAAGHAVLKVIQKD--KLQNNAHVVGSYLKERLTALK  395 (480)
Q Consensus       321 t~sK~~g~-G~pig~v~~~~~~~~~l~~--~~~~~t~~~~~~~~aaa~a~L~~i~~~--~~~~~~~~~~~~l~~~L~~l~  395 (480)
                      ||||.+|+ |   +.++..+++.+.+..  .....+.+.++.+++++.++++.+.++  ...++++++.+++++.|... 
T Consensus       209 tlsK~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~-  284 (370)
T PRK05937        209 TYSKALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA-  284 (370)
T ss_pred             echhhhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC-
Confidence            99999984 5   335565665554431  223344557788888888899887643  34455555566655544321 


Q ss_pred             HhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-cCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          396 DKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-FYGNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       396 ~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                                +.+....+.+..         .....+.+.|.++||.+.... ...+.+||+++..+|++|||.+++.|+
T Consensus       285 ----------~~~~~~~i~~~~---------~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~  345 (370)
T PRK05937        285 ----------APGCVQPIFLPG---------ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLA  345 (370)
T ss_pred             ----------CCCCEEEEEeCC---------hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence                      111122233311         123567888999999887421 224689999999999999999999999


Q ss_pred             HHHhh
Q 011669          475 YSLSK  479 (480)
Q Consensus       475 ~~l~~  479 (480)
                      +++++
T Consensus       346 ~~~~~  350 (370)
T PRK05937        346 TYLEK  350 (370)
T ss_pred             HHHHH
Confidence            98764

>PRK09082 methionine aminotransferase; Validated

Probab=99.94  E-value=3.8e-25  Score=225.01  Aligned_cols=339  Identities=14%  Similarity=0.099  Sum_probs=216.2

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--cccccCChHHHHHHHHHHHhCCCC--C-CEEEEeCCHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYLNHAIADFAEALASKMPGN--L-KVVFFTNSGTEANEL  173 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~l~e~L~~~~~~~--~-~~v~f~~sGseA~~~  173 (480)
                      +.++||..|....   ..+|.+.+++.+.+.....  ....+..+...++++.+.+.++..  . +++++|+|+++|+..
T Consensus        30 ~~~i~l~~g~~~~---~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~  106 (386)
T PRK09082         30 HGAINLSQGFPDF---DGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA  106 (386)
T ss_pred             CCEEEecCCCCCC---CCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence            3578998887654   3478899999887764321  111223345566677766665432  2 369999999999999


Q ss_pred             HHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       174 Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      +++....  +++.|++.+++|.+........             |...+.++... ..|..|    .+++++.++    +
T Consensus       107 ~~~~~~~--~gd~Vli~~p~y~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~~~----~  162 (386)
T PRK09082        107 AILALVR--PGDEVIVFDPSYDSYAPAIELA-------------GGRAVRVALQP-PDFRVD----WQRFAAAIS----P  162 (386)
T ss_pred             HHHHHcC--CCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecCc-ccccCC----HHHHHHhcC----c
Confidence            9986543  6788999999887654433222             22333332211 112233    566776664    2


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccCC---Ccceeeeccccc-c
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGV---VPDIVTMAKGIG-N  328 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~~---~pDivt~sK~~g-~  328 (480)
                      ++++|++...+|++|.+. +++.+++|.++|++||+++|+||+|..+...+.....+ ...+.   ..-+.+|||.+| .
T Consensus       163 ~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~  241 (386)
T PRK09082        163 RTRLIILNTPHNPSGTVW-SAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVT  241 (386)
T ss_pred             cceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccch
Confidence            566777766678888764 77889999999999999999999998775443111111 11122   222337999998 7


Q ss_pred             CccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccc
Q 011669          329 GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG  408 (480)
Q Consensus       329 G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g  408 (480)
                      |+|+||+++++++++.+........++.+.+++.++.+.|+.  .+.+.+++++.-+..++.+.+..+++++.......|
T Consensus       242 G~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~  319 (386)
T PRK09082        242 GWKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRA--EPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGT  319 (386)
T ss_pred             hhhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCee
Confidence            999999999999998887655556677888888877766642  233333333332333333333333333222223346


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      +++|+++.+-.      .....++++.| .++||.+.|+..|      .+++||+.  ..+++++++++++|.+
T Consensus       320 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~--~~~~~~l~~~~~rl~~  385 (386)
T PRK09082        320 YFQLVDYSAIS------DLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCF--AKQEETLDAAAERLCQ  385 (386)
T ss_pred             EEEEEeccccC------CCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEe--cCCHHHHHHHHHHHhh
Confidence            67888874210      01245677765 6789999987543      26899995  4589999999999875

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.94  E-value=7.8e-25  Score=223.33  Aligned_cols=335  Identities=13%  Similarity=0.076  Sum_probs=209.5

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCC-EEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLK-VVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~-~v~f~~sGse  169 (480)
                      |..++||..|.+..   ..++++.+++.+.+....  ...|.. ....+|++++++++    +  .+.+ .+++|+|+++
T Consensus        34 g~~~i~l~~g~p~~---~~p~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~  108 (394)
T PRK05942         34 GLDLIDLGMGNPDG---AAPQPVIEAAIAALADPQ--NHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKE  108 (394)
T ss_pred             CCCeEEcCCCCCCC---CCCHHHHHHHHHHHhCCC--CccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHH
Confidence            55678998775432   346678888877665321  112332 22344555555443    3  2345 5889999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      |+..++....  .+++.|++.+++|.+........             |...+.+|......|..|    .+++++.++ 
T Consensus       109 al~~~~~~~~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~~~-  168 (394)
T PRK05942        109 GLTHLALAYV--NPGDVVLVPSPAYPAHFRGPLIA-------------GAQIYPIILKPENDWLID----LSSIPEEVA-  168 (394)
T ss_pred             HHHHHHHHhC--CCCCEEEEcCCCCcchHHHHHHc-------------CCEEEEeecCCccCCccC----HHHHHHhcc-
Confidence            9999987653  36789999999997755443221             333333332212223333    566766664 


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc---ccc-cCCCcceeeeccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG---FEA-HGVVPDIVTMAKG  325 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~---~~~-~~~~pDivt~sK~  325 (480)
                         .+++++++...+|++|.+ .+++.+++|.++|++||+++|+||+|..|...+....+   +.. .+....+.+|||.
T Consensus       169 ---~~~k~i~l~~P~NPtG~~-~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~  244 (394)
T PRK05942        169 ---QQAKILYFNYPSNPTTAT-APREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKT  244 (394)
T ss_pred             ---ccceEEEEcCCCCCCCCc-CCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhc
Confidence               256777766557788876 48888999999999999999999999877554421111   111 1233445689999


Q ss_pred             cc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (480)
Q Consensus       326 ~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  402 (480)
                      ++ +|+|+||+++++++++.+........++.+.+++.++.++|+..++  +...+++++..+++.+.|+    .+++ .
T Consensus       245 ~~~~GlRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~----~~~~-~  319 (394)
T PRK05942        245 YNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLG----ELGW-N  319 (394)
T ss_pred             cCChhhheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH----HCCC-e
Confidence            97 7999999999999998887644444566777888888888863211  1223333444444444443    3332 2


Q ss_pred             eEec-cceeEEEEEecCCCcCCCCHHHHHHHHH-HHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          403 DVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMD-KMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       403 ~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~-~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ...+ .|+++|+.+....        ...++.. .+.++||.+.++..|    .+++||+.+  .+.+.+.+++++|.++
T Consensus       320 ~~~~~~~~f~~~~~~~~~--------~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~  389 (394)
T PRK05942        320 IPPTKATMYLWVPCPVGM--------GSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDRLKQA  389 (394)
T ss_pred             ecCCCeeeEEEEECCCCC--------CHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence            2233 4557888873210        1233444 456789999887543    369999964  4567777777777653

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.94  E-value=4.2e-25  Score=232.48  Aligned_cols=346  Identities=14%  Similarity=0.118  Sum_probs=217.2

Q ss_pred             CCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC------CCCCCEEEEeCCH
Q 011669           96 ENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM------PGNLKVVFFTNSG  167 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~------~~~~~~v~f~~sG  167 (480)
                      ..|+.+|+|..|... .+|. .++++.+++.+.+....    .|.. ....+|++.|++++      ..+.++|++++|+
T Consensus       143 ~~g~~~i~l~~G~p~-~~~~~~p~~~~~~~~~~~~~~~----~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~  217 (517)
T PRK13355        143 AAGTHILKLNIGNPA-PFGFRTPDEVVYDMAQQLTDTE----GYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGV  217 (517)
T ss_pred             HcCCCeEEecCcCCC-cCCCCCCHHHHHHHHHHhhcCC----CCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcH
Confidence            468889999988764 3443 46789999988775431    2332 34666777777665      3456789999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      +|++..+++...  .+++.|++.+++|..+...+...             |...+.++......|..|    .+++++.+
T Consensus       218 ~eal~~~~~~l~--~~Gd~Vli~~P~y~~y~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~l~~~~  278 (517)
T PRK13355        218 SELINLSMSALL--DDGDEVLIPSPDYPLWTACVNLA-------------GGTAVHYRCDEQSEWYPD----IDDIRSKI  278 (517)
T ss_pred             HHHHHHHHHHhC--CCCCEEEEcCCCCcCHHHHHHHC-------------CCEEEEeecCcccCCCCC----HHHHHHhc
Confidence            999999998654  36789999999998766544333             222222222112234334    56777766


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcce-----eee
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI-----VTM  322 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDi-----vt~  322 (480)
                      +   + +++++++...+|++|.+. +++.+++|.++|++||+++|+||+|..|.+.|.....+..  ..+|.     -+|
T Consensus       279 ~---~-~~k~i~i~nP~NPTG~v~-~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~--~~~~~~vi~~~S~  351 (517)
T PRK13355        279 T---S-RTKAIVIINPNNPTGALY-PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS--LAPDLFCVTFSGL  351 (517)
T ss_pred             C---c-CceEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH--hCCCCeEEEEecc
Confidence            4   2 455554444467777764 7899999999999999999999999988655421111111  12332     368


Q ss_pred             ccccc-cCccccccccC--HHH----HHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHh
Q 011669          323 AKGIG-NGIPLGAVVTT--PEI----AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       323 sK~~g-~G~pig~v~~~--~~~----~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l  394 (480)
                      ||.++ .|||+||++++  +++    ++.+... ....++.|.+++.++.++|+.... +++.+..++..+. ++.+.+.
T Consensus       352 SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~-r~~l~~~  429 (517)
T PRK13355        352 SKSHMIAGYRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQ-RELVYNA  429 (517)
T ss_pred             hhhccCcccceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHH
Confidence            99997 79999999954  443    3333211 123356778888888888852110 1222222222221 3333333


Q ss_pred             HHhcCceeeEecccee-EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHH
Q 011669          395 KDKYGIIGDVRGRGFL-LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       395 ~~~~~~~~~v~g~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~  469 (480)
                      .++++.+....+.|.| +|+.+.....   +.......+.+.|.++||++.+|..|    .+++||+  ++.++++++++
T Consensus       430 L~~~~g~~~~~p~g~fy~~~~l~~~~~---~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris--~~~~~~~l~~a  504 (517)
T PRK13355        430 LNAIPGISAVKPKAAFYIFPKIDVKKF---NIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVV--YLPRLEDLEDA  504 (517)
T ss_pred             HhcCCCcccCCCCeeeEEEeecCcccC---CCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEE--eCCCHHHHHHH
Confidence            3444434445555555 4556532100   00011334556678899999998554    3689999  56899999999


Q ss_pred             HHHHHHHHhh
Q 011669          470 VDVMDYSLSK  479 (480)
Q Consensus       470 l~~l~~~l~~  479 (480)
                      +++|.++++.
T Consensus       505 ~~rl~~~~~~  514 (517)
T PRK13355        505 MDRLADFFSY  514 (517)
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=9e-25  Score=221.49  Aligned_cols=326  Identities=15%  Similarity=0.120  Sum_probs=214.3

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      .+..+|||..|....   ..+|.+.+++.+ ....    ..|+.+...+|+++|+++++.+.++|++++|+++++..+++
T Consensus        50 ~~~~~i~l~~n~~p~---~~~~~v~~a~~~-~~~~----~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~  121 (380)
T PLN03026         50 KPEDIVKLDANENPY---GPPPEVLEALGN-MKFP----YVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMR  121 (380)
T ss_pred             CccceEEccCCCCCC---CCCHHHHHHHHh-hHhh----ccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHH
Confidence            356889988876543   467889888764 2211    23555567889999999998777889999999999999887


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      ....  +++.|++.+++|..+...+...             |...+.+|..  ..|..|    .+++++.++.   .+++
T Consensus       122 ~~~~--~gd~Vlv~~P~y~~y~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~~~~---~~~~  177 (380)
T PLN03026        122 CVLD--PGDKIIDCPPTFGMYVFDAAVN-------------GAEVIKVPRT--PDFSLD----VPRIVEAVET---HKPK  177 (380)
T ss_pred             HhcC--CCCEEEEcCCChHHHHHHHHHc-------------CCEEEEeecC--CCCCcC----HHHHHHHHhc---cCCc
Confidence            6532  6678999999996544322211             3333333321  123333    5677776632   2567


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccCCCcceeeeccccc-cCccccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTMAKGIG-NGIPLGA  334 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~~~pDivt~sK~~g-~G~pig~  334 (480)
                      +|++.+.+|++|.+.+    .+++.++++.. +++|+||+|..|...+ .... .+..+...-+-||||.+| +|+|+||
T Consensus       178 ~v~l~~P~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~-~~~~~~~~~~~viv~~SfSK~~glaGlRiGy  251 (380)
T PLN03026        178 LLFLTSPNNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQE-SRMKWVKKYDNLIVLRTFSKRAGLAGLRVGY  251 (380)
T ss_pred             EEEEeCCCCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCc-chHHHHHhCCCEEEEecchHhhcCcccccee
Confidence            7777777888888875    66667777654 9999999999885433 2211 111122222348999999 8999999


Q ss_pred             cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                      +++++++++.+....  ..++.+.+++.++.++|+.   .++.++.++.....++.+.+..++++.+......|+++++.
T Consensus       252 ~~~~~~~i~~l~~~~--~~~~~~~~~q~aa~~aL~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f~~~~  326 (380)
T PLN03026        252 GAFPLSIIEYLWRAK--QPYNVSVAAEVAACAALSN---PKYLEDVKNALVEERERLFGLLKEVPFLEPYPSDANFILCR  326 (380)
T ss_pred             eecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeEEEEE
Confidence            999999988876543  2466788888888888852   23333333332333333433333444333345567888887


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      +...        ....++.+.|.++||.+.++..  ..+++||+..   +.++++.++++|++.
T Consensus       327 ~~~~--------~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al~~~  379 (380)
T PLN03026        327 VTSG--------RDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---KPEHTDALMEALKQL  379 (380)
T ss_pred             CCCC--------CCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence            6321        1145688888899999988642  2468999933   778899999988764

>PRK05839 hypothetical protein; Provisional

Probab=99.94  E-value=6e-25  Score=222.45  Aligned_cols=332  Identities=12%  Similarity=0.028  Sum_probs=212.6

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-ccccccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANEL  173 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~~~  173 (480)
                      .|+.++||..|.+..  + .++.+.+++.+...... +....+..+....+++.+.+.++  .+.++|++|+|+++|+..
T Consensus        22 ~~~~~i~l~~~~p~~--~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~   98 (374)
T PRK05839         22 KEYKGLDLTIGEPQF--E-TPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFN   98 (374)
T ss_pred             CCCCeEEcCCCCCCC--C-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence            388999999887653  4 35788888877654321 11112223445556666666544  456889999999999988


Q ss_pred             HHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       174 Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      ++++...-.+++.|++..++|.++.......             |+..+++|....+.|..|    ..+.  .+     +
T Consensus        99 ~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~~~d----~~~~--~~-----~  154 (374)
T PRK05839         99 FPQFVLFDKQNPTIAYPNPFYQIYEGAAIAS-------------RAKVLLMPLTKENDFTPS----LNEK--EL-----Q  154 (374)
T ss_pred             HHHHHhcCCCCCEEEECCCCchhhHHHHHhc-------------CCEEEEeecccccCCcCC----cchh--hh-----c
Confidence            8775432235678999999998766554322             344444443222223322    1111  12     1


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-c--------ccCCCcceeeecc
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-E--------AHGVVPDIVTMAK  324 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~--------~~~~~pDivt~sK  324 (480)
                      +++++++...+|++|.+. +++.+++|.++|++||+++|+||+|..|...+ ....+ .        .++...-+.+|||
T Consensus       155 ~~k~v~i~nP~NPTG~~~-s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK  232 (374)
T PRK05839        155 EVDLVILNSPNNPTGRTL-SLEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISK  232 (374)
T ss_pred             cccEEEEeCCCCCcCccc-CHHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEecccc
Confidence            455666656677777764 88899999999999999999999999874322 22111 1        0112222447999


Q ss_pred             ccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee
Q 011669          325 GIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (480)
Q Consensus       325 ~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  403 (480)
                      .++ +|+|+||+++++++++.+........++.+.+.+.++.+++.   ++++.++.++..+..++.+.+   .++..  
T Consensus       233 ~~~~~GlRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~---~l~~~--  304 (374)
T PRK05839        233 RSSAPGLRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYAKNLKLARE---ILGIT--  304 (374)
T ss_pred             ccCCccceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHH---hcCCC--
Confidence            987 799999999999998877654333445667777777776663   233433333333333333332   22222  


Q ss_pred             EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       404 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ....|+++|+.+..           ..++++.|+ ++||.+.++..+      .+++||+.  ..+++++.+++++|.++
T Consensus       305 ~p~gg~fi~~~~~~-----------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~l~~l~~~  371 (374)
T PRK05839        305 IPPATFYVWLPVDN-----------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIAL--VYDTPKLEKALEIIKTY  371 (374)
T ss_pred             CCCeeEEEEEeCCC-----------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHH
Confidence            44568888988731           245777776 599999987432      37999995  46899999999999988


Q ss_pred             Hh
Q 011669          477 LS  478 (480)
Q Consensus       477 l~  478 (480)
                      ++
T Consensus       372 l~  373 (374)
T PRK05839        372 LE  373 (374)
T ss_pred             hh
Confidence            75

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.94  E-value=5.6e-25  Score=227.03  Aligned_cols=345  Identities=17%  Similarity=0.192  Sum_probs=241.0

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc-ccccC-ChHHHHHHHHHHHhC------CCCCCEEEEeCCH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSG  167 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~~~-~~~~~~l~e~L~~~~------~~~~~~v~f~~sG  167 (480)
                      .+....+||..|.....+ .....+.+++.+.+...... ...|. .....+|++.+++++      ....++|++|+|.
T Consensus        86 ~~~~~~i~f~~g~p~~~~-fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~  164 (459)
T COG1167          86 EDDPSVIDFAGGLPDPSL-FPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGA  164 (459)
T ss_pred             cCCCceecCCCCCCCccc-CCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCH
Confidence            455788999888754422 23456666666655433211 11122 234444444444443      3456799999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      .+|+++.+++...  +++.|++-+++|++........             |+..+++|....+   -|    .+.|++.+
T Consensus       165 q~al~l~~~~l~~--pGd~v~vE~PtY~~~~~~~~~~-------------g~~~~~vp~d~~G---~~----~e~le~~~  222 (459)
T COG1167         165 QQALDLLLRLLLD--PGDTVLVEDPTYPGALQALEAL-------------GARVIPVPVDEDG---ID----PEALEEAL  222 (459)
T ss_pred             HHHHHHHHHHhCC--CCCEEEEcCCCcHHHHHHHHHc-------------CCcEEecCCCCCC---CC----HHHHHHHH
Confidence            9999998887655  7889999999999866544333             4444544442111   12    68888888


Q ss_pred             HccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCc---ccccccCCCcceeeec
Q 011669          248 DFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF---WGFEAHGVVPDIVTMA  323 (480)
Q Consensus       248 ~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~---~~~~~~~~~pDivt~s  323 (480)
                      +..   +++++++.| .||++|.+. +.+--++|.++|++||+++|.|++|..|..++...   .+.+..+.+.-+.|||
T Consensus       223 ~~~---~~k~~y~~P~~qNPtG~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFS  298 (459)
T COG1167         223 AQW---KPKAVYVTPTFQNPTGVTM-SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFS  298 (459)
T ss_pred             hhc---CCcEEEECCCCCCCCCCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeeh
Confidence            743   788999999 788889875 78888999999999999999999999997765322   3344445566677999


Q ss_pred             cccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHhHHhc-C
Q 011669          324 KGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE---RLTALKDKY-G  399 (480)
Q Consensus       324 K~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~---~L~~l~~~~-~  399 (480)
                      |.++.|+|+||+++++++++.+....+..+.+.+.+.+.+...-|.   +..+.++++++++.+++   .+.+..+++ +
T Consensus       299 K~l~PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~---~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~  375 (459)
T COG1167         299 KTLAPGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLL---SGHYDRHLRRLRREYARRRDALLEALAEYLP  375 (459)
T ss_pred             hhcccccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999998887778888899998887766654   33344444444444433   343434444 3


Q ss_pred             -ce-eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec-cCc------CCCEEEEeCCCCCCHHHHHHHH
Q 011669          400 -II-GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK-GGF------YGNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       400 -~~-~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-~~~------~~~~iRi~p~~~~t~~~id~~l  470 (480)
                       .. ......|+++|+++...        .....+.+.++++||.+.+ +..      ..+.+||+++. .+++++++++
T Consensus       376 ~~~~~~~p~gG~flwl~l~~~--------~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~-~~~e~i~~gi  446 (459)
T COG1167         376 ELATWTRPEGGLFLWLELPEG--------IDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSS-PSEEEIEEGI  446 (459)
T ss_pred             CCeeeecCCceEEEEEEcCCC--------CCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCC-CCHHHHHHHH
Confidence             22 23344489999998442        3367789999999999998 422      23589999874 5689999999


Q ss_pred             HHHHHHHhh
Q 011669          471 DVMDYSLSK  479 (480)
Q Consensus       471 ~~l~~~l~~  479 (480)
                      .+|.+++++
T Consensus       447 ~~l~~~~~~  455 (459)
T COG1167         447 KRLAALLRE  455 (459)
T ss_pred             HHHHHHHHH
Confidence            999988864

>PRK07777 aminotransferase; Validated

Probab=99.94  E-value=1.5e-24  Score=220.87  Aligned_cols=337  Identities=15%  Similarity=0.146  Sum_probs=212.5

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHH----hCCC--CCC-EEEEeCCHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALAS----KMPG--NLK-VVFFTNSGTEAN  171 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~----~~~~--~~~-~v~f~~sGseA~  171 (480)
                      .++||..|.+...   .++.+.+++.+.+....   ..|. .....+|++.+++    .++.  +.+ +|++|+||++|+
T Consensus        25 ~~i~l~~g~p~~~---~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al   98 (387)
T PRK07777         25 GAVNLGQGFPDED---GPPEMLEAAQEAIAGGV---NQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAI   98 (387)
T ss_pred             CeEEccCCCCCCC---CCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence            5689988887652   35778888777665421   2232 2334555555554    3432  233 699999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC-CCCCCChHHHHHHHHHHHHcc
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~d~~~~~~~le~~i~~~  250 (480)
                      .+++....  .+++.|++..++|++........             |...+.++.... ..|..|    .+++++.+.  
T Consensus        99 ~~~~~~~~--~~gd~vli~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~d----~~~l~~~~~--  157 (387)
T PRK07777         99 AAAVLGLV--EPGDEVLLIEPYYDSYAAVIAMA-------------GAHRVPVPLVPDGRGFALD----LDALRAAVT--  157 (387)
T ss_pred             HHHHHHhc--CCCCEEEEeCCCchhhHHHHHHC-------------CCEEEEeecCCccCCCcCC----HHHHHHhcC--
Confidence            99887543  36788999999998765332222             222222221111 122223    566776664  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-C---CCcceeeecccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-G---VVPDIVTMAKGI  326 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-~---~~pDivt~sK~~  326 (480)
                        +++++|++.+.+|++|.+. +.+.+++|.++|++||+++|+||+|.++...+.....+... +   ...-+.+|||.+
T Consensus       158 --~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  234 (387)
T PRK07777        158 --PRTRALIVNSPHNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTF  234 (387)
T ss_pred             --cccEEEEEcCCCCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhc
Confidence              2567777777788888875 78889999999999999999999999876544222122211 1   222244799999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceee
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  403 (480)
                      | .|+|+||+++++++++.+.......+++.+++.+.++..+++..++  +...+.+++..+.+.+.|++    +++...
T Consensus       235 g~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~  310 (387)
T PRK07777        235 NVTGWKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAE----AGFEVH  310 (387)
T ss_pred             cCcCceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh----CCCCcc
Confidence            9 7999999999999888776654445666666666666666642111  12334444445555554444    332111


Q ss_pred             EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC-------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY-------GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       404 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~-------~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      ....|+++|+++.....      .....+++.|+ ++||.+.|+..|       .+++||+.  ..+++++++++++|.+
T Consensus       311 ~~~g~~~~~~~~~~~~~------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~--~~~~~~l~~~l~~l~~  382 (387)
T PRK07777        311 DSAGTYFLCADPRPLGY------DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAF--CKRDDTLDEAIRRLRA  382 (387)
T ss_pred             CCCcceEEEecccccCC------CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEe--cCCHHHHHHHHHHHHH
Confidence            22235667777632110      02456788886 679999987533       35899995  4589999999999998


Q ss_pred             HHh
Q 011669          476 SLS  478 (480)
Q Consensus       476 ~l~  478 (480)
                      +..
T Consensus       383 ~~~  385 (387)
T PRK07777        383 LRG  385 (387)
T ss_pred             Hhc
Confidence            754

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.94  E-value=1.9e-24  Score=222.24  Aligned_cols=349  Identities=16%  Similarity=0.105  Sum_probs=212.1

Q ss_pred             CCEEEeccCCcccccCC-CCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC----C--CCCCEEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNLKVVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~----~--~~~~~v~f~~sGse  169 (480)
                      |+.+|++..|.+...-. -.+|++.+++.+.+.....  ..|. .....++++.+++++    +  .+.++|++|+|+++
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~--~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~  128 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKY--NSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQ  128 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcC--CCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHH
Confidence            78899998887654111 1357899999988765311  1232 234455666666554    2  24578999999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      |+..+++...  .+++.|++.+++|..+...+.....           .+..++.+  ....|.-|    .++++++++ 
T Consensus       129 al~l~~~~l~--~~Gd~Vlv~~P~y~~y~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~~~-  188 (430)
T PLN00145        129 AIEIIMSVLA--QPGANILLPRPGYPLYEARAVFSGL-----------EVRHFDLL--PERGWEVD----LEGVEALAD-  188 (430)
T ss_pred             HHHHHHHHhc--CCCCEEEEcCCCCccHHHHHHHcCC-----------EEEEeeCC--cccCCcCC----HHHHHHHhC-
Confidence            9999998654  3678899999999875543332211           12222211  11123334    567777765 


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC---CCcceeeecccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG---VVPDIVTMAKGI  326 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~---~~pDivt~sK~~  326 (480)
                        ++..++++++| +|++|.+ .+.+.+++|.++|++||+++|+||+|..|.+.+..+......+   ...-+-+|||.+
T Consensus       189 --~~~~~i~i~~P-~NPtG~v-~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  264 (430)
T PLN00145        189 --ENTVAMVIINP-NNPCGSV-YSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRW  264 (430)
T ss_pred             --cCceEEEEeCC-CCCCCCC-CCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEecccccc
Confidence              22445566666 6777765 5888899999999999999999999998765442211111111   122234799997


Q ss_pred             c-cCcccccccc--CHHHHH------hhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHh
Q 011669          327 G-NGIPLGAVVT--TPEIAE------VLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK  397 (480)
Q Consensus       327 g-~G~pig~v~~--~~~~~~------~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~  397 (480)
                      + .|||+||+++  ++++++      .+.... ....+.+.+.+.++..+|+.- .+++.++..+..+..++.+.+..++
T Consensus       265 ~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~  342 (430)
T PLN00145        265 VVPGWRLGWIATCDPNGILKETKVVDSIRNYL-NISTDPATFVQGAIPQIIANT-KEEFFTKTLGLLKETADICYEKIKE  342 (430)
T ss_pred             CCCCeeEEEEEEecchhhhhhhHHHHHHHHHh-cccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7 7999999997  444432      222211 122245678888888877631 1333333333333333333333344


Q ss_pred             cCceee--EeccceeEEEEEecCCCcCCCCHHHHHHHH-HHHHHcCceeeccCcCC--CEEEEeCCCCCCHHHHHHHHHH
Q 011669          398 YGIIGD--VRGRGFLLGVEFVTDRQLKTPAKAETLYIM-DKMKEMGVLVGKGGFYG--NVFRITPPLCFTKEDADYLVDV  472 (480)
Q Consensus       398 ~~~~~~--v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~~~~~--~~iRi~p~~~~t~~~id~~l~~  472 (480)
                      ++.+..  .+..|+++|+.+.....   +.......++ +.+.++||++.||..++  +++||+.  ..+++++++++++
T Consensus       343 ~~g~~~~~~P~ga~y~~v~l~~~~~---~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~--~~~~~~l~~al~r  417 (430)
T PLN00145        343 IKCITCPHKPEGSMFVMVKLDLSCL---SGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITF--AIDPPSLEDGLER  417 (430)
T ss_pred             CCCCCCCcCCCeeeEEEeccChhhc---CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEe--CCCHHHHHHHHHH
Confidence            443332  24456677777632100   0000123445 45567899999986554  7999995  4689999999999


Q ss_pred             HHHHHhh
Q 011669          473 MDYSLSK  479 (480)
Q Consensus       473 l~~~l~~  479 (480)
                      |.+++.+
T Consensus       418 l~~~~~~  424 (430)
T PLN00145        418 LKSFCLR  424 (430)
T ss_pred             HHHHHHH
Confidence            9998864

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.94  E-value=1.2e-24  Score=222.03  Aligned_cols=339  Identities=13%  Similarity=0.044  Sum_probs=211.4

Q ss_pred             eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-ccccccCChHHHHHHHHHHHhCC----CCC-CEEEEeCCHH
Q 011669           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYLNHAIADFAEALASKMP----GNL-KVVFFTNSGT  168 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~l~e~L~~~~~----~~~-~~v~f~~sGs  168 (480)
                      +..|+.++||..|.+..   ..++.+.+++.+.+.... +....+..+....+++.+.+.++    .+. ++|++|+|++
T Consensus        24 ~~~~~~~i~l~~~~p~~---~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~  100 (393)
T TIGR03538        24 PPASKPPIALSIGEPKH---PTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTR  100 (393)
T ss_pred             hhcCCCeEEecCCCCCC---CCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcH
Confidence            45678889998887654   357889999988765321 11112222334445555544422    244 3799999999


Q ss_pred             HHHHHHHHHHHhhcCCc--eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCN--DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~--~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      +|+..++++...  +++  .|++.+++|.++...+...             |+..+.+|....+.|..|    .+++++.
T Consensus       101 ~al~~~~~~l~~--~gd~~~vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~  161 (393)
T TIGR03538       101 EALFAFAQAVIN--PGQAPLVVMPNPFYQIYEGAALLA-------------GAEPYFLNCTAENGFLPD----FDAVPES  161 (393)
T ss_pred             HHHHHHHHHHcC--CCCcceEEecCCCCcchHHHHHhc-------------CCeEEEeeccccCCCCCC----HHHHHHH
Confidence            999999987654  344  4888899997655433221             233333332111223333    4566666


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Cccc----ccccC-----CC
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWG----FEAHG-----VV  316 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~----~~~~~-----~~  316 (480)
                      +..    +++++++...+|++|.+. +.+.+++|.++|++||+++|+||+|..+...+. ....    ....+     ..
T Consensus       162 ~~~----~~k~i~l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  236 (393)
T TIGR03538       162 VWR----RCQLLFVCSPGNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRC  236 (393)
T ss_pred             Hhh----cceEEEEeCCCCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccE
Confidence            542    456666656677888764 888999999999999999999999988754321 1111    11111     11


Q ss_pred             cceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Q 011669          317 PDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK  395 (480)
Q Consensus       317 pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~  395 (480)
                      .-+-+|||.++ .|+|+||+++++++++.+.......+++.+++.+.++.+.+.   .+++.++.++..+..++.+.+..
T Consensus       237 i~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L  313 (393)
T TIGR03538       237 LVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWN---DEQHVRENRALYREKFAAVLEIL  313 (393)
T ss_pred             EEEecchhhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHH
Confidence            22347999987 799999999999998877654433456678888888877764   23333333222222222222222


Q ss_pred             HhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----------CCEEEEeCCCCCCHH
Q 011669          396 DKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----------GNVFRITPPLCFTKE  464 (480)
Q Consensus       396 ~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----------~~~iRi~p~~~~t~~  464 (480)
                      .++ ........|+++|+++..          ....+.+.|+ ++||.+.||..|          .+++||+  ++.+++
T Consensus       314 ~~~-~~~~~p~gg~f~~~~~~~----------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris--~~~~~~  380 (393)
T TIGR03538       314 GQV-LDLELPDAGFYLWPKVPG----------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIA--LVAPLE  380 (393)
T ss_pred             Hhh-CcccCCCeeEEEEEECCC----------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEE--ecCCHH
Confidence            222 111234568888998731          1345777765 689999888643          2689999  456899


Q ss_pred             HHHHHHHHHHHH
Q 011669          465 DADYLVDVMDYS  476 (480)
Q Consensus       465 ~id~~l~~l~~~  476 (480)
                      ++++++++|.+.
T Consensus       381 ~l~~~l~~l~~~  392 (393)
T TIGR03538       381 ECVEAAERIRSF  392 (393)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999874

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07683 aminotransferase A; Validated

Probab=99.94  E-value=2.8e-24  Score=218.65  Aligned_cols=338  Identities=12%  Similarity=0.088  Sum_probs=210.3

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhC----C--CCCC-EEEEeCCHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM----P--GNLK-VVFFTNSGTEA  170 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~----~--~~~~-~v~f~~sGseA  170 (480)
                      ..++||..|.+..   ..++.+.+++.+.+....   ..| +.....+|++.+++++    +  .+.+ +|++|+|+++|
T Consensus        28 ~~~i~l~~~~p~~---~~~~~~~~a~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~a  101 (387)
T PRK07683         28 DNLISLTIGQPDF---PTPSHVKEAAKRAITENY---TSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEA  101 (387)
T ss_pred             CCeEEecCCCCCC---CCCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHH
Confidence            4678888876542   246789999998876431   112 1233344444444443    2  2455 79999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +..+++....  .++.|++.+++|.++.......             |+..+.++... ..|..|    .+++++.++. 
T Consensus       102 l~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~~----~~~l~~~~~~-  160 (387)
T PRK07683        102 IDIAFRTILE--PGTEVILPAPIYPGYEPIIRLC-------------GAKPVFIDTRS-TGFRLT----AEALENAITE-  160 (387)
T ss_pred             HHHHHHHhCC--CCCEEEEcCCCccchHHHHHHc-------------CCEEEEeecCc-ccCCCC----HHHHHHhcCc-
Confidence            9999886543  6788999999998765554332             22222222211 112222    4567666642 


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-CC---Ccceeeecccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GV---VPDIVTMAKGI  326 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-~~---~pDivt~sK~~  326 (480)
                         +++++++...+|++|.+ .+++.+++|.++|+++|+++|+||+|..+...+ .......+ +.   ..-+.+|||.+
T Consensus       161 ---~~~~i~i~~p~NPtG~~-~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~s~SK~~  235 (387)
T PRK07683        161 ---KTRCVVLPYPSNPTGVT-LSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ-PHTSIAHFPEMREKTIVINGLSKSH  235 (387)
T ss_pred             ---CceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCeEEEEecccccceeCC-CcCChhhccCCcCCeEEEeeccccc
Confidence               45666666667778876 488889999999999999999999999875433 21111111 21   22234799999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                      | .|+|+||+++++++++.+.........+.+.+++.++.+.|+.  .+...++.++.-+..++.+.+...+.+......
T Consensus       236 ~~pGlRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  313 (387)
T PRK07683        236 SMTGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTA--GKDDAKMMRHQYKKRRDYVYNRLISMGLDVEKP  313 (387)
T ss_pred             cCccceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC
Confidence            9 8999999999999888876543333345567788888777752  122233333222223333333333333222223


Q ss_pred             ccceeEEEEEecCCCcCCCCHHHHHHHHH-HHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMD-KMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~-~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..|+++|+.+....       .....+.. .+.++||.+.++..|    .+++||+.  ..+++++.+++++|.+++.+
T Consensus       314 ~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~--~~~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        314 TGAFYLFPSIGHFT-------MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSY--AYSIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             CeeEEEEEecccCC-------CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHh
Confidence            34556666653211       01234544 457789999987543    47899994  56899999999999998753

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.94  E-value=1.4e-24  Score=219.12  Aligned_cols=323  Identities=15%  Similarity=0.086  Sum_probs=206.6

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC---CCCCEEEEeCCHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEANELA  174 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~---~~~~~v~f~~sGseA~~~A  174 (480)
                      +..++||..|.+..   ..+|.+.+++.+......+....+.......+++.+.+..+   .+.++|++|+|+++++..+
T Consensus        26 ~~~~i~l~~~~p~~---~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~  102 (364)
T PRK07865         26 PDGIVDLSVGTPVD---PVPPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWL  102 (364)
T ss_pred             CCCEEEcCCCCCCC---CCCHHHHHHHHHHHhhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHH
Confidence            34578888776432   34688889887655432222222223445556666655433   4467999999999999987


Q ss_pred             HHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCc
Q 011669          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (480)
Q Consensus       175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (480)
                      +.++. ..+++.|++.+++|.+........             |...+.+++             .++++       ..+
T Consensus       103 ~~~l~-~~~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~-------------~~~l~-------~~~  148 (364)
T PRK07865        103 PTLLG-LGPGDVVVIPELAYPTYEVGARLA-------------GATVVRADS-------------LTELG-------PQR  148 (364)
T ss_pred             HHHHc-CCCCCEEEECCCCcccHHHHHHhc-------------CCEEEecCC-------------hhhCC-------ccc
Confidence            66542 136788999999997664443222             333333221             12221       135


Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccc------cCCCcceeeeccccc
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEA------HGVVPDIVTMAKGIG  327 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~------~~~~pDivt~sK~~g  327 (480)
                      +++|++++.+|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+ .... +..      .+...-+.+|||.++
T Consensus       149 ~~~v~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  226 (364)
T PRK07865        149 PALIWLNSPSNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDA-EPVSILDPRVCGGDHTGLLAVHSLSKQSN  226 (364)
T ss_pred             ceEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCC-CCCccccccccCCccceEEEEeechhccC
Confidence            67777777788888775 77889999999999999999999999886554 2211 111      011122347999997


Q ss_pred             -cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec
Q 011669          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG  406 (480)
Q Consensus       328 -~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  406 (480)
                       .|+|+||+++++++++.+........++.+++.+.++.++|+   ++++.++.++..+..++.+.+...+++.......
T Consensus       227 ~~GlRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  303 (364)
T PRK07865        227 LAGYRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALG---DDAHVREQRERYARRRAVLRPALEAAGFRVDHSE  303 (364)
T ss_pred             CCceeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence             799999999999998887654444556678888888777764   2333333333333334444444334442212223


Q ss_pred             cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       407 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      .|+++|+.+..          ....+.+.|.++||++.++..+    .+++||+..  .+++++++++++|.
T Consensus       304 ~~~~~~~~~~~----------~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~~~~~~~l~  363 (364)
T PRK07865        304 AGLYLWATRGE----------DCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALT--ATDERIAAAVERLA  363 (364)
T ss_pred             ccEEEEEeCCC----------CHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEec--CCHHHHHHHHHHhh
Confidence            35667776521          1345678889999999887433    368999954  57999999999885

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.94  E-value=3.6e-24  Score=218.18  Aligned_cols=341  Identities=13%  Similarity=0.102  Sum_probs=218.1

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC----CC--C-CCEEEEeCCHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----PG--N-LKVVFFTNSGTEA  170 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~----~~--~-~~~v~f~~sGseA  170 (480)
                      +.+|||..|....  + .++.+.+++.+.+....   ..|. .....+|++.+++++    +.  . .++|++|+|+++|
T Consensus        30 ~~~i~l~~~~~~~--~-~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~a  103 (391)
T PRK07309         30 PGILKLTLGEPDF--T-TPDHVKEAAKRAIDANQ---SHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEA  103 (391)
T ss_pred             CCeEEcCCCCCCC--C-CCHHHHHHHHHHHhcCC---CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHH
Confidence            4589998888753  4 36788888887765421   1122 223455555555543    22  1 3579999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +..+++...  .+++.|++.+++|.++.......             |...+.++... ..|..|    .+++++.++..
T Consensus       104 l~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~~~~~  163 (391)
T PRK07309        104 LSASLTAIL--EPGDKVLLPAPAYPGYEPIVNLV-------------GAEIVEIDTTE-NDFVLT----PEMLEKAILEQ  163 (391)
T ss_pred             HHHHHHHhc--CCCCEEEEeCCCCcchHHHHHHc-------------CCEEEEEecCC-cCCcCC----HHHHHHHhhcc
Confidence            999988653  36788999999998865433221             22222222211 112223    56777777542


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc--cCCCcceeeeccccc-
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA--HGVVPDIVTMAKGIG-  327 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~--~~~~pDivt~sK~~g-  327 (480)
                       .++++++++...+|++|.+ .+.+.+++|.++|++||+++|+||+|..|...|........  .+...-+.+|||.+| 
T Consensus       164 -~~~~~~i~l~~P~NPtG~~-~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~  241 (391)
T PRK07309        164 -GDKLKAVILNYPANPTGVT-YSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAM  241 (391)
T ss_pred             -CCCeEEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccC
Confidence             2357777777557778866 47788999999999999999999999987654422212111  111222347999998 


Q ss_pred             cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                      .|+|+||+++++++++.+.......+.+.+++++.++.+.|+....  ....+++++..+++.+.|++    ++......
T Consensus       242 ~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~p  317 (391)
T PRK07309        242 TGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTD----LGFKIIKP  317 (391)
T ss_pred             ccceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH----CCCeecCC
Confidence            8999999999999988877543344556788888888887763211  12233444444445444443    33222223


Q ss_pred             ccceeEEEEEecCCCcCCCCHHHHHHHHHH-HHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDK-MKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..|+++|+.+....      ......+.+. +.++||++.++..+    +++|||+.+  .+.+++++++++|.+++++
T Consensus       318 ~gg~~~~~~l~~~~------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~~  388 (391)
T PRK07309        318 DGAFYIFAKIPAGY------NQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYMEE  388 (391)
T ss_pred             CeeEEEEEECCCCC------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            34666777663210      0013456654 56789999987543    468999954  5789999999999998865

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.94  E-value=2.6e-24  Score=219.09  Aligned_cols=340  Identities=15%  Similarity=0.127  Sum_probs=218.9

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc---ccccccCChHHHHHHHHHHHhCCCC---CCEEEEeCCHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMPGN---LKVVFFTNSGTEANEL  173 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~l~e~L~~~~~~~---~~~v~f~~sGseA~~~  173 (480)
                      .++|+..|...  +. .++.+.+|+.+.+....   +....+..+....+++.+++.++..   .+++++++|+++++..
T Consensus        28 ~~~~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~  104 (389)
T PRK05957         28 GTISLGQGVVS--YP-PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN  104 (389)
T ss_pred             CeEEccCCCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence            36777777655  22 56889999988765432   2122233456677888888776642   5679999999999998


Q ss_pred             HHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       174 Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      ++....  .+++.|++.+++|.........             .|+..+.+|..  ..|+.|    .+++++.++    .
T Consensus       105 ~~~~~~--~~gd~Vlv~~P~y~~~~~~~~~-------------~g~~~~~v~~~--~~~~~d----~~~l~~~i~----~  159 (389)
T PRK05957        105 AILAIT--DPGDEIILNTPYYFNHEMAITM-------------AGCQPILVPTD--DNYQLQ----PEAIEQAIT----P  159 (389)
T ss_pred             HHHHhc--CCCCEEEEeCCCCcCHHHHHHh-------------cCCEEEEeecC--CCCCcC----HHHHHHhcC----c
Confidence            887653  3678899999998654332211             13333333321  122223    567777764    2


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-cc---ccCCCcceeeeccccc-c
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FE---AHGVVPDIVTMAKGIG-N  328 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~---~~~~~pDivt~sK~~g-~  328 (480)
                      ++++|++...+|++|.+. +++.+++|.++|++||+++|+||+|.+|...+..... ..   .......+.+|||.+| .
T Consensus       160 ~~klv~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~  238 (389)
T PRK05957        160 KTRAIVTISPNNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFA  238 (389)
T ss_pred             CceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCc
Confidence            566767766788888775 7788999999999999999999999988554311111 11   1112233558999998 8


Q ss_pred             CccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCce-eeE-ec
Q 011669          329 GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII-GDV-RG  406 (480)
Q Consensus       329 G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~v-~g  406 (480)
                      |+|+||+++++++++.+.........+.+.+++.++..+|+.  .+++.++..+..+..++.+.+..++++.+ ... ..
T Consensus       239 GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~  316 (389)
T PRK05957        239 SWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQV--GKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPAN  316 (389)
T ss_pred             cceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC
Confidence            999999999999998887644334455667788888777752  12232222222233333333333333322 212 23


Q ss_pred             cceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       407 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .|+++|+++...        ....++++.|. ++||.+.+|..+    ++++||+.+. .+++++++++++|.+.++.
T Consensus       317 gg~~~~~~~~~~--------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~~  385 (389)
T PRK05957        317 GAFYCFLKVNTD--------LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGLKT  385 (389)
T ss_pred             eeEEEEEeCCCC--------CChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence            367788887321        12456777775 689999997543    3589999643 5789999999999988764

>PRK08363 alanine aminotransferase; Validated

Probab=99.94  E-value=2.1e-24  Score=220.51  Aligned_cols=345  Identities=13%  Similarity=0.023  Sum_probs=215.3

Q ss_pred             CCCEEEeccCCcccc-cCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC----C--CCCCEEEEeCCHH
Q 011669           97 NGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNLKVVFFTNSGT  168 (480)
Q Consensus        97 dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~----~--~~~~~v~f~~sGs  168 (480)
                      +|..+||+..|.+.. .++ .++.+.+++.+.+....   ..|. .....+|++++++++    +  .+.++|++|+|++
T Consensus        28 ~~~~~i~l~~g~p~~~~~~-p~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~  103 (398)
T PRK08363         28 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCRAIKEGH---NYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVT  103 (398)
T ss_pred             cCCCeEEEeCCCCCcCCCC-CCHHHHHHHHHHHHcCC---CCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHH
Confidence            467899999998742 444 57899999988775421   1232 344566666666654    2  3557899999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +|+..++....  .+++.|++.+++|.+....+...             |...+.++......|..|    .+++++.+.
T Consensus       104 ~al~~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~l~~~~~  164 (398)
T PRK08363        104 EALQLIFGALL--DPGDEILIPGPSYPPYTGLVKFY-------------GGVPVEYRTIEEEGWQPD----IDDIRKKIT  164 (398)
T ss_pred             HHHHHHHHHhC--CCCCEEEEcCCCCcchHHHHHHc-------------CCEEEEeccccccCCcCC----HHHHHhhCC
Confidence            99999998663  36788999999998765543322             222222211101112223    456666664


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC---CCcceeeeccc
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG---VVPDIVTMAKG  325 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~---~~pDivt~sK~  325 (480)
                          .+++++++...+|++|.+. +.+.+++|.++|++||+++|+||+|..+...+ .........   ...-+.+|||.
T Consensus       165 ----~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~  238 (398)
T PRK08363        165 ----EKTKAIAVINPNNPTGALY-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEG-KHVSPGSLTKDVPVIVMNGLSKV  238 (398)
T ss_pred             ----cceEEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCC-cccCHHHcCcCCcEEEEecchhc
Confidence                2456666655677788764 78889999999999999999999998775444 221111111   11223489999


Q ss_pred             cc-cCcccccccc--CHHHHHhhcCCC---ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          326 IG-NGIPLGAVVT--TPEIAEVLTRRN---YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       326 ~g-~G~pig~v~~--~~~~~~~l~~~~---~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      ++ +|+|+||+++  ++++++.+....   ...+++.+.+++.++.++|+.  .+++.++.++.....++.+.+..++++
T Consensus       239 ~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~  316 (398)
T PRK08363        239 YFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG--PMDYLEEYMKKLKERRDYIYKRLNEIP  316 (398)
T ss_pred             cCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            76 7999999997  666655543221   113467788888888888752  233333333333333333333333343


Q ss_pred             ceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          400 IIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       400 ~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      .+....+. |+++|+.+.....   .  .....+.+.|.++||.+.++..|    .+++||+.  ..+++++++++++|.
T Consensus       317 ~~~~~~p~g~~~~~~~l~~~~~---~--~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~--~~~~~~l~~~l~~l~  389 (398)
T PRK08363        317 GISTTKPQGAFYIFPRIEEGPW---K--DDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVF--LPPVEILEEAMDRFE  389 (398)
T ss_pred             CCEecCCCeEEEEEEEeccCCC---C--CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHHH
Confidence            33333344 4455656632100   0  11233456678899999987544    36899994  578999999999999


Q ss_pred             HHHhh
Q 011669          475 YSLSK  479 (480)
Q Consensus       475 ~~l~~  479 (480)
                      +++++
T Consensus       390 ~~~~~  394 (398)
T PRK08363        390 EFMRE  394 (398)
T ss_pred             HHHHH
Confidence            88764

>PRK08912 hypothetical protein; Provisional

Probab=99.94  E-value=1.9e-24  Score=220.09  Aligned_cols=339  Identities=16%  Similarity=0.124  Sum_probs=212.7

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHh----CC--CCCC-EEEEeCCHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASK----MP--GNLK-VVFFTNSGTEAN  171 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~----~~--~~~~-~v~f~~sGseA~  171 (480)
                      ..+||..|.+..  + .++.+.+++.+.+....   ..|.. ....+|++.++++    ++  .+.+ +|++|+|+++|+
T Consensus        27 ~~i~l~~g~p~~--~-~p~~~~~~~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al  100 (387)
T PRK08912         27 GAINLGQGFPDD--P-GPEDVRRAAADALLDGS---NQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEAL  100 (387)
T ss_pred             CeEEccCCCCCC--C-CCHHHHHHHHHHHhcCC---CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHH
Confidence            468998888764  3 36888888887765421   12332 2234455555543    32  3455 899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ..++.....  +++.|++.+++|.++...+...             |+..+.+|.. ...|+.|    .+++++.+.   
T Consensus       101 ~~~~~~~~~--~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~-~~~~~~~----~~~l~~~~~---  157 (387)
T PRK08912        101 AAALLALVE--PGDEVVLFQPLYDAYLPLIRRA-------------GGVPRLVRLE-PPHWRLP----RAALAAAFS---  157 (387)
T ss_pred             HHHHHHhcC--CCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecC-cccCcCC----HHHHHHHhC---
Confidence            988876533  6788999999997655433222             2222222211 1112223    566777664   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccC---CCcceeeeccccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHG---VVPDIVTMAKGIG  327 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~---~~pDivt~sK~~g  327 (480)
                       .+++++++...+|++|.+. +.+.+++|.++|++||+++|+||+|..|...+.....+ ...+   ...-+.+|||.+|
T Consensus       158 -~~~~~v~l~~p~NPtG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g  235 (387)
T PRK08912        158 -PRTKAVLLNNPLNPAGKVF-PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFS  235 (387)
T ss_pred             -ccceEEEEeCCCCCcCccc-CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhcc
Confidence             2455555555677788764 77889999999999999999999998775443111111 1112   2223347899999


Q ss_pred             -cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec
Q 011669          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG  406 (480)
Q Consensus       328 -~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  406 (480)
                       .|+|+||+++++++++.+.......+++.++..+.++.+.|.  ..+++.+++++..+..++.+.+..+.+++ ....+
T Consensus       236 ~~GlRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~  312 (387)
T PRK08912        236 LTGWKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLG--KPDDYFEGMRADLARSRDRLAAGLRRIGF-PVLPS  312 (387)
T ss_pred             CcCceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccCC
Confidence             899999999999998887654444557777777777777664  22333333333333333333333333332 22233


Q ss_pred             -cceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          407 -RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       407 -~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                       .|+++|+.+.....     ......+++.|+ ++||++.++..|      .+++||+..  .+++++++++++|.++++
T Consensus       313 ~g~~~l~~~l~~~~~-----~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~--~~~~~l~~~l~rl~~~l~  385 (387)
T PRK08912        313 QGTYFLTVDLAPLGL-----AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA--KRDATLDEAVERLAAARR  385 (387)
T ss_pred             CcceEEEecccccCC-----CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence             35677887743110     012456777765 679999987543      368999954  579999999999999886


Q ss_pred             h
Q 011669          479 K  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       386 ~  386 (387)
T PRK08912        386 R  386 (387)
T ss_pred             c
Confidence            5

>PRK07550 hypothetical protein; Provisional

Probab=99.94  E-value=1.4e-24  Score=221.04  Aligned_cols=341  Identities=13%  Similarity=0.090  Sum_probs=212.5

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc---ccccccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEAN  171 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~  171 (480)
                      .|..++||..|....   -.++.+.+++.+.+....   +....+..+....+++.+.+..+  ...++|++|+|+++|+
T Consensus        27 ~~~~~i~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al  103 (386)
T PRK07550         27 ADGPLIDLSQAVPGY---PPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAF  103 (386)
T ss_pred             cCCCeEEeCCCCCCC---CCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence            456679998888653   236788888887664321   11111222334445555544432  3457899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ..++++...  +++.|++.+++|.+...... .            .|...++++......|..|    .++++++++.  
T Consensus       104 ~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~-~------------~g~~~~~v~~~~~~~~~~~----~~~l~~~~~~--  162 (386)
T PRK07550        104 WAAMVTLAG--AGDEVILPLPWYFNHKMWLD-M------------LGIRPVYLPCDEGPGLLPD----PAAAEALITP--  162 (386)
T ss_pred             HHHHHHhcC--CCCEEEEcCCCCcchHHHHH-h------------cCCEEEEEecCCCcCCCCC----HHHHHHHhcc--
Confidence            998887643  67889999999966543221 1            1333333332111222223    5677777752  


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-cccc---CCCcceeeeccccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAH---GVVPDIVTMAKGIG  327 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~---~~~pDivt~sK~~g  327 (480)
                        ++++|++...+|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+..... +...   .....+.+|||.++
T Consensus       163 --~~~~v~~~~P~NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g  239 (386)
T PRK07550        163 --RTRAIALVTPNNPTGVVY-PPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYA  239 (386)
T ss_pred             --cCcEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhcc
Confidence              444544444456777764 7888999999999999999999999887432211111 1111   12233458999999


Q ss_pred             -cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       328 -~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                       .|+|+||+++++++++.+.......+.+.+.+++.++.++|+.+++  ++..+.+++..+++.+.|.+    ++.+...
T Consensus       240 ~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~  315 (386)
T PRK07550        240 LTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFAR----LPGWELL  315 (386)
T ss_pred             CcccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh----CCCceeC
Confidence             8999999999999888777654445666788888888877763221  12223333334444444433    3222222


Q ss_pred             eccceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ...|.++|+.+....       ....++++.| .++||.+.++..+    .+++||+.. ..+++++++++++|.++
T Consensus       316 ~~g~~~~~~~~~~~~-------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        316 ASGAYFAYVRHPFPD-------RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFA-NADVAGIGELVERLRAF  384 (386)
T ss_pred             CCceEEEEecCCCCC-------CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEee-cCCHHHHHHHHHHHHhh
Confidence            334667788763211       1245677766 4689999997543    368999975 35799999999999874

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.94  E-value=1.6e-24  Score=218.01  Aligned_cols=323  Identities=16%  Similarity=0.125  Sum_probs=207.7

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC---CCCCEEEEeCCHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEANEL  173 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~---~~~~~v~f~~sGseA~~~  173 (480)
                      ++..++||.+|.+..   ..+|.+.+++.+......+....+..+...++++.+.+.++   .+.++|++|+|+++++..
T Consensus        19 ~~~~~i~l~~~~p~~---~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~   95 (357)
T TIGR03539        19 HPDGIVDLSVGTPVD---PVPPLIRAALAAAADAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAW   95 (357)
T ss_pred             CCCCeEEccCCCCCC---CCCHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHH
Confidence            345679998886543   35688899887765433232222333445566666655433   456899999999999998


Q ss_pred             HHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       174 Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      ++.+.. ..+++.|++.+++|.+........             |...+.+++             .+.+    +   ..
T Consensus        96 ~~~~l~-~~~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~-------------~~~l----~---~~  141 (357)
T TIGR03539        96 LPTLLG-LGPGDTVVIPELAYPTYEVGALLA-------------GATPVAADD-------------PTEL----D---PV  141 (357)
T ss_pred             HHHHHc-CCCCCEEEECCCCcHHHHHHHHhc-------------CCEEeccCC-------------hhhc----C---cc
Confidence            776542 136788999999998765443222             223333221             1222    1   13


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccc------cCCCcceeeecccc
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEA------HGVVPDIVTMAKGI  326 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~------~~~~pDivt~sK~~  326 (480)
                      ++++++++..+|++|.+. +.+.+++|.++|++||+++|+||+|..|.+.+ .... +..      .+...-+.+|||.+
T Consensus       142 ~~~~v~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~~vi~~~S~SK~~  219 (357)
T TIGR03539       142 GPDLIWLNSPGNPTGRVL-SVDELRAIVAWARERGAVVASDECYLELGWEG-RPVSILDPRVCGGDHTGLLAVHSLSKRS  219 (357)
T ss_pred             CccEEEEeCCCCCcCccC-CHHHHHHHHHHHHHcCeEEEEecchhhhccCC-CCccceecccCCCccccEEEEecccccc
Confidence            677888877788888764 78889999999999999999999998886554 2211 110      01112233799999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                      + +|+|+||+++++++++.+........++.+.+++.++.++|+   ++...++.+..-+..++.+.+...+++......
T Consensus       220 ~~~G~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p  296 (357)
T TIGR03539       220 NLAGYRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALG---DDGHVAEQKARYAARRAQLKPALEKAGFRIDHS  296 (357)
T ss_pred             CCCceeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            6 799999999999998877654444567778888888877774   223333333322233333333333333221222


Q ss_pred             ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                      ..|+++|+.+..          ....+.+.|.++||.+.++..+    .+++||+.  ..+++++++++++|
T Consensus       297 ~~~~~~~~~~~~----------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~--~~~~~~i~~~~~~l  356 (357)
T TIGR03539       297 EAGLYLWATRGE----------DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVAL--TATDERIAAAVARL  356 (357)
T ss_pred             CccEEEEEECCC----------CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEe--cCCHHHHHHHHHhh
Confidence            345667776521          1345778889999999987543    37899995  45789999999876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK08175 aminotransferase; Validated

Probab=99.94  E-value=3.8e-24  Score=218.29  Aligned_cols=344  Identities=14%  Similarity=0.108  Sum_probs=215.7

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHh----C--CCCCC-EEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASK----M--PGNLK-VVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~----~--~~~~~-~v~f~~sGse  169 (480)
                      |+.++||..|.+..   ..+|.+.+++.+.+....  ...|. .....+|++.++++    +  +.+.+ ++++|+|+++
T Consensus        28 ~~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~  102 (395)
T PRK08175         28 GEDIIDFSMGNPDG---PTPPHIVEKLCEVAQRPD--THGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKE  102 (395)
T ss_pred             CCCeEEcCCCCCCC---CCCHHHHHHHHHHHhCCC--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence            45678888775543   456778888877664321  11222 12234454544443    2  23344 6999999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      ++..++....  .+++.|++.+++|..........             |+..+.+|....+.       ..++++++++.
T Consensus       103 ~l~~~~~~~~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~-------~~~~l~~~l~~  160 (395)
T PRK08175        103 GLAHLMLATL--DHGDTVLVPNPSYPIHIYGAVIA-------------GAQVRSVPLVEGVD-------FFNELERAIRE  160 (395)
T ss_pred             HHHHHHHHhC--CCCCEEEEcCCCCcchHHHHHHc-------------CCeEEEEecccCCC-------cHHHHHHHHhh
Confidence            9998877553  36788999999997654443221             33333333211111       14677777764


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc---ccc-cCCCcceeeeccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG---FEA-HGVVPDIVTMAKG  325 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~---~~~-~~~~pDivt~sK~  325 (480)
                      . ..+++++++...+|++|.+ .+.+.+++|.++|++||+++|+||+|..+-..+.....   .+. .+...-+.+|||.
T Consensus       161 ~-~~~~~~v~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  238 (395)
T PRK08175        161 S-YPKPKMMILGFPSNPTAQC-VELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKS  238 (395)
T ss_pred             c-cCCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeecccc
Confidence            2 2356777777667788876 48888999999999999999999999887544411111   111 1222234579999


Q ss_pred             cc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       326 ~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                      +| .|+|+||+++++++++.+........++.+.+.+.++.+.|+.  .+.+.+++++.-+..++.+.+..+.+++....
T Consensus       239 ~g~pGlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  316 (395)
T PRK08175        239 YNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG--DQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEM  316 (395)
T ss_pred             ccCcchhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence            97 7999999999999998877544444566677778877777752  22333333332222333333333333432223


Q ss_pred             eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ...|+++|+++.....     ......+++.++ +.||.+.++..+    .+++||+.  ..+++.+.+++++|.+++++
T Consensus       317 p~~g~~i~i~l~~~~~-----~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~--~~~~~~~~~al~~l~~~l~~  389 (395)
T PRK08175        317 PKASMYVWAKIPEPYA-----AMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL--IENRDRIRQAIRGIKAMFRA  389 (395)
T ss_pred             CCEEEEEEEECCcccC-----CCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHh
Confidence            3468889998843210     001356766654 689999987433    35899995  46899999999999998865

>PRK06855 aminotransferase; Validated

Probab=99.94  E-value=2e-24  Score=222.60  Aligned_cols=356  Identities=11%  Similarity=0.047  Sum_probs=207.1

Q ss_pred             CCEEEeccCCcccccCC-CCCHHHHHHHHHHHHhcc---ccccccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHH
Q 011669           98 GRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEAN  171 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~  171 (480)
                      |+.++++..|.+.. .+ -.++.+.+++.+.+....   +....+..+....+++.+.+..+  .+.++|++|+|+++|+
T Consensus        31 g~~~~~~~~G~p~~-~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al  109 (433)
T PRK06855         31 GVKITWENIGDPIA-KGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAI  109 (433)
T ss_pred             cccccccccCCCcc-cCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHH
Confidence            45566666555422 12 246778888887664421   11112222334444444444322  3457899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ..++.+   ..+++.|++.+++|+++........            |+..+.+|......|..|    .++|++.++.. 
T Consensus       110 ~~~~~l---~~~Gd~Vlv~~P~Y~~~~~~~~~~~------------g~~~v~v~~~~~~~~~~d----~~~l~~~~~~~-  169 (433)
T PRK06855        110 AKIYGL---LRREARVIGPSPAYSTHSSAEAAHA------------GYPPVTYRLDPENNWYPD----LDDLENKVKYN-  169 (433)
T ss_pred             HHHHHh---cCCCCeEEEeCCCCchHHHHHHHhc------------CCeEEEEecccccCCCCC----HHHHHHHHhcC-
Confidence            988752   3467899999999998553221111            222222221111223333    57788887531 


Q ss_pred             CCceE-EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cc-cC-CCcceeeeccccc
Q 011669          252 SGHVA-GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EA-HG-VVPDIVTMAKGIG  327 (480)
Q Consensus       252 ~~~~a-~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~-~~-~~pDivt~sK~~g  327 (480)
                       .+++ .++++| +|++|.+ .+++.+++|.++|++||+++|+||+|..|.+.+..+..+ .. .+ ...-+.+|||.++
T Consensus       170 -~~~~~i~l~~P-~NPTG~~-~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~  246 (433)
T PRK06855        170 -PSIAGILLINP-DNPTGAV-YPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELP  246 (433)
T ss_pred             -CCceEEEEECC-CCCCCcC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccC
Confidence             2344 455555 6777765 589999999999999999999999999886555222111 11 11 1223447999998


Q ss_pred             -cCccccccccC-----H---HHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669          328 -NGIPLGAVVTT-----P---EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY  398 (480)
Q Consensus       328 -~G~pig~v~~~-----~---~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~  398 (480)
                       .|+|+||++++     +   ++++.+..... ...+.+.+++.++.++|+.-.-+++.++.++.-+..++.+.+...++
T Consensus       247 ~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~  325 (433)
T PRK06855        247 WPGSRCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDV  325 (433)
T ss_pred             CCcceEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             89999999973     2   23333322221 24456788888888777521112333333333333333343333334


Q ss_pred             CceeeEec-cceeEEEEEecCCC-----cCCC--CH------------HHHHHHH-HHHHHcCceeeccCcCC---CEEE
Q 011669          399 GIIGDVRG-RGFLLGVEFVTDRQ-----LKTP--AK------------AETLYIM-DKMKEMGVLVGKGGFYG---NVFR  454 (480)
Q Consensus       399 ~~~~~v~g-~g~~~~i~~~~~~~-----~~~~--~~------------~~~~~~~-~~l~~~Gv~v~~~~~~~---~~iR  454 (480)
                      +.+...++ .|+++|+.+.....     .+..  +.            .....++ ..+.++||.+.||..|+   +.+|
T Consensus       326 ~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~R  405 (433)
T PRK06855        326 PGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFR  405 (433)
T ss_pred             CCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceE
Confidence            32332334 35788888743200     0000  00            0022344 45678899999986553   4699


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          455 ITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       455 i~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |+... .+++++++++++|.+++++
T Consensus       406 ls~~~-~~~~~i~~~~~~l~~~~~~  429 (433)
T PRK06855        406 VTLLE-RDEEKFEWIYQTLAEKIEE  429 (433)
T ss_pred             EEECC-CcHHHHHHHHHHHHHHHHH
Confidence            99543 5899999999999998864

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=6.9e-24  Score=213.00  Aligned_cols=323  Identities=17%  Similarity=0.139  Sum_probs=215.2

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar  179 (480)
                      ..+||..|...  ++ .+|.+.+++.+.+...  ....|..+...++++.++++++.+.++|++++|+++++..+++...
T Consensus        23 ~~~~l~~~~~~--~~-~p~~~~~a~~~~~~~~--~~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~   97 (351)
T PRK14807         23 YKYKMDANETP--FE-LPEEVIKNIQEIVKSS--QVNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI   97 (351)
T ss_pred             ceeEccCCCCC--CC-CCHHHHHHHHHHhhcC--cccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc
Confidence            34777776654  33 5789999998877532  1234555557889999999998777899999999999999888653


Q ss_pred             hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEE
Q 011669          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (480)
Q Consensus       180 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi  259 (480)
                        .+++.|++.+++|.++.......             |...+.++..  ..|+.|    .+++++.++.   .++++++
T Consensus        98 --~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~~~~---~~~k~v~  153 (351)
T PRK14807         98 --NKGDVVIYPHPSFAMYSVYSKIA-------------GAVEIPVKLK--EDYTYD----VGSFIKVIEK---YQPKLVF  153 (351)
T ss_pred             --CCCCEEEEeCCChHHHHHHHHHc-------------CCeEEEeecC--CCCCCC----HHHHHHHhhc---cCCCEEE
Confidence              36788999999997654432222             2222232221  112223    5677777752   2567777


Q ss_pred             EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccCCCcceeeeccccc-cCcccccccc
Q 011669          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTMAKGIG-NGIPLGAVVT  337 (480)
Q Consensus       260 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~~~pDivt~sK~~g-~G~pig~v~~  337 (480)
                      +...+|++|.+.+    .+++.++|++++.++|+||+|.+|.  +..... .+..+...-+-+|||.++ .|+|+||+++
T Consensus       154 l~~p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~  227 (351)
T PRK14807        154 LCNPNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY--GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVA  227 (351)
T ss_pred             EeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc--ccchHHHhhhCCCEEEEecchHhcccchhceeeeec
Confidence            7777888888876    7888888988889999999998773  312111 112222233447999999 8999999999


Q ss_pred             CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEec
Q 011669          338 TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT  417 (480)
Q Consensus       338 ~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~  417 (480)
                      ++++++.+.....  .++.+++++.++.+.|+.-.-++..+++++..+++.+.|+    +++.+...++.|.++|+.+..
T Consensus       228 ~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~----~~~g~~~~~~~~~~~~i~~~~  301 (351)
T PRK14807        228 NENILKYLNLVKS--PYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELS----KIPGIKVYPSKTNFILVKFKD  301 (351)
T ss_pred             CHHHHHHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----hCCCcEECcCCccEEEEEcCC
Confidence            9999988865432  3556788888888877631112222333333344444433    333333345567888887731


Q ss_pred             CCCcCCCCHHHHHHHHHHHHHcCceeeccCc---CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          418 DRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---YGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                                 ...+.+.|+++||.+.++..   ..+++||+.   .+.++.+.+++.|++++
T Consensus       302 -----------~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        302 -----------ADYVYQGLLERGILVRDFSKVEGLEGALRITV---SSCEANDYLINGLKELL  350 (351)
T ss_pred             -----------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEc---CCHHHHHHHHHHHHHhh
Confidence                       35678889999999977532   246899993   36788999999998864

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.94  E-value=2.3e-24  Score=220.26  Aligned_cols=330  Identities=14%  Similarity=0.103  Sum_probs=210.5

Q ss_pred             CCcccccCCCCCHHHHHHHHHHHHhcc--ccc-----cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669          106 GGIATVCCGHCHPYVVDSIVNQIKRIQ--HST-----VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus       106 ~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~-----~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      .+.+....||++|.+++++.+++ ...  +..     ..+..+...+++++++++++.+.+.++|+++|+++.+.+++.+
T Consensus        23 ~~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~  101 (398)
T cd00613          23 SFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAA  101 (398)
T ss_pred             ccccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHH
Confidence            44555667999999999887777 321  111     1122346678999999988766557888888888888888877


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                      +...++.+.|++...+|+.....+...+...        |.....+|...  .+..|    .+++++.+.    +++++|
T Consensus       102 ~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~--------g~~~~~v~~~~--~~~~d----~~~l~~~i~----~~t~~v  163 (398)
T cd00613         102 IRAYHKRNKVLVPDSAHPTNPAVARTRGEPL--------GIEVVEVPSDE--GGTVD----LEALKEEVS----EEVAAL  163 (398)
T ss_pred             HhcccCCCEEEEcCccCcchHHHHHHhcccC--------CcEEEEeccCC--CCCcC----HHHHHHhcC----CCeEEE
Confidence            6543223344455668888877776654211        22222222111  11112    567777664    368999


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccc----cCccc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIG----NGIPL  332 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g----~G~pi  332 (480)
                      ++++++ ++|.+   .+++++|+++|++||+++|+|++|......+    ....+  .+|+++  ++|.+.    ||+++
T Consensus       164 iv~~~~-~~G~~---~~~l~~i~~la~~~g~~livD~~~~~~~~~~----~~~~~--~~d~~~~s~~K~~~p~g~Ggp~~  233 (398)
T cd00613         164 MVQYPN-TLGVF---EDLIKEIADIAHSAGALVYVDGDNLNLTGLK----PPGEY--GADIVVGNLQKTGVPHGGGGPGA  233 (398)
T ss_pred             EEECCC-CCcee---cchHHHHHHHHHhcCCEEEEEeccccccCCC----ChHHc--CCCEEEeeccccCCCCCCCCCce
Confidence            999875 56776   3568999999999999999999885321111    01112  367764  568762    36889


Q ss_pred             cccccCHHHHHhhcCC-----------------------------CccccCCCcHHHHHHHHHHHHHhhhh---HHHHHH
Q 011669          333 GAVVTTPEIAEVLTRR-----------------------------NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNA  380 (480)
Q Consensus       333 g~v~~~~~~~~~l~~~-----------------------------~~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~  380 (480)
                      |+++.++++++.+...                             ...++++++++.++++.++++.+.++   ++.++.
T Consensus       234 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~  313 (398)
T cd00613         234 GFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERA  313 (398)
T ss_pred             eEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            9999998888765221                             11235666778888888777766554   355788


Q ss_pred             HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-cCCCEEEEeCCC
Q 011669          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-FYGNVFRITPPL  459 (480)
Q Consensus       381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~  459 (480)
                      ++++++++++|+++.... ....  .....+++.+..      +.......+++.|+++||++.... ...+.+|++|++
T Consensus       314 ~~~~~~l~~~L~~~~~~~-~~~~--~~~~~v~~~~~~------~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~  384 (398)
T cd00613         314 HLNANYLAKRLKEVGGVL-PFNG--PFFHEFVLRLPP------LYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTE  384 (398)
T ss_pred             HHHHHHHHHHHHhcCCcc-cCCC--CeeEEEEEEcCC------cchHHHHHHHHhhhhcCccccccccCCCCeEEEEcCC
Confidence            888888888887752111 0111  111112333311      001245678899999999875421 124789999999


Q ss_pred             CCCHHHHHHHHHHH
Q 011669          460 CFTKEDADYLVDVM  473 (480)
Q Consensus       460 ~~t~~~id~~l~~l  473 (480)
                      .+|++|||+++++|
T Consensus       385 ~~t~edid~~~~~L  398 (398)
T cd00613         385 TETKEELDALLEAL  398 (398)
T ss_pred             CCCHHHHHHHHHhC
Confidence            99999999999864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.94  E-value=4e-24  Score=218.49  Aligned_cols=337  Identities=16%  Similarity=0.191  Sum_probs=209.4

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC-----CCCCCEEEEeCCHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM-----PGNLKVVFFTNSGTEAN  171 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~-----~~~~~~v~f~~sGseA~  171 (480)
                      |..++||..|....   ..++.+.+++.+.....    ..|. .....++++.+++++     +.+.++|++|+||++|+
T Consensus        29 ~~~~i~l~~~~~~~---~~~~~~~~a~~~~~~~~----~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al  101 (397)
T PRK07568         29 GIKVYHLNIGQPDI---KTPEVFFEAIKNYDEEV----LAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAI  101 (397)
T ss_pred             CCCEEEecCCCCCC---CCCHHHHHHHHHHhcCC----cCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHH
Confidence            34577887776543   23678888887654322    1122 334566666666664     34567899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCC-ChHHHHHHHHHHHHcc
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGA-DGEMYAKDVQDLIDFG  250 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~-d~~~~~~~le~~i~~~  250 (480)
                      ..+++...  .+++.|++.+++|....... ..            .|+..+.++......|.. +    .++++++++  
T Consensus       102 ~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~-~~------------~g~~~~~v~~~~~~g~~~~~----~~~l~~~~~--  160 (397)
T PRK07568        102 LFAMMAIC--DPGDEILVPEPFYANYNGFA-TS------------AGVKIVPVTTKIEEGFHLPS----KEEIEKLIT--  160 (397)
T ss_pred             HHHHHHhc--CCCCEEEEecCCCccHHHHH-HH------------cCCEEEEeecCcccCCCCCC----HHHHHHhcC--
Confidence            99987653  36678999999886543221 11            133333333211111211 1    356776664  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccCCCcce---eeecccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDI---VTMAKGI  326 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~~~pDi---vt~sK~~  326 (480)
                        .++++|++...++++|.+ .+.+.+++|.++|+++|+++|+||+|.+|.+.+...... ...+..+++   -+|||.+
T Consensus       161 --~~~~~v~i~~p~NPtG~~-~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~  237 (397)
T PRK07568        161 --PKTKAILISNPGNPTGVV-YTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRY  237 (397)
T ss_pred             --ccceEEEEECCCCCCCcc-CCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhc
Confidence              255666655556777866 477789999999999999999999999986655212121 111222333   3799999


Q ss_pred             c-cCccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          327 G-NGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       327 g-~G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                      + .|+|+||++++ +++++.+..... .+++.+.+.+.++.++|+.  .+.+.++.++.-+..++.+.+..++++.+...
T Consensus       238 ~~~G~R~G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  314 (397)
T PRK07568        238 SACGARIGCLISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDT--PESYFDEVREEYKKRRDILYEELNKIPGVVCE  314 (397)
T ss_pred             cCCCcceEEEecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence            9 69999999985 678776543222 2467788888888887753  22333333332222333333333334333333


Q ss_pred             ecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHH------cCceeeccCcC-------CCEEEEeCCCCCCHHHHHHHH
Q 011669          405 RGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKE------MGVLVGKGGFY-------GNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       405 ~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~------~Gv~v~~~~~~-------~~~iRi~p~~~~t~~~id~~l  470 (480)
                      .+. |+++|+.+...         ....+.+.|.+      +||++.|+..|       .+++||+.  +.+++++++++
T Consensus       315 ~p~g~~~~~~~l~~~---------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~--~~~~~~~~~~~  383 (397)
T PRK07568        315 KPKGAFYIIAKLPVD---------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAY--VLNEEDLKRAM  383 (397)
T ss_pred             CCCcceEEEEecCCC---------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEE--eCCHHHHHHHH
Confidence            333 55678877321         13456666654      69999987433       35899994  56789999999


Q ss_pred             HHHHHHHhh
Q 011669          471 DVMDYSLSK  479 (480)
Q Consensus       471 ~~l~~~l~~  479 (480)
                      ++|.+++++
T Consensus       384 ~~l~~~l~~  392 (397)
T PRK07568        384 EILKEALEK  392 (397)
T ss_pred             HHHHHHHHH
Confidence            999998864

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.93  E-value=6.2e-24  Score=214.11  Aligned_cols=327  Identities=15%  Similarity=0.102  Sum_probs=209.0

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      ..++||..|...  ++ .+|.+.+++.+.+...    ..|+.+...+|++.|+++++.+.++|++|+|++|++..+++..
T Consensus        22 ~~~i~l~~~~n~--~~-~~~~~~~a~~~~~~~~----~~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l   94 (360)
T PRK07392         22 DAILDFSASINP--LG-PPESVIAAIQSALSAL----RHYPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGREL   94 (360)
T ss_pred             ccEEEeCCcCCC--CC-CCHHHHHHHHHHHHHh----hcCCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh
Confidence            468998876543  44 6789999988777642    2344444568999999998777889999999999999888753


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                      .   +++.|++.+++|.++...+...             |+..+++|....+.+..+    ..+++++.... . +++++
T Consensus        95 ~---~g~~vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~~----~~~~~~~~~~~-~-~~~~~  152 (360)
T PRK07392         95 A---QLRAVYLITPAFGDYRRALRAF-------------GATVKELPLPLDQPSPGL----TLRLQTLPPQL-T-PNDGL  152 (360)
T ss_pred             C---CCCeEEEECCCcHHHHHHHHHc-------------CCeEEEEecccccCCccc----ccCHHHHHHhc-c-CCCEE
Confidence            2   4568999999998876555443             222233222111111000    12233333321 2 34455


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-c---cccCCCcceeeeccccc-cCcccc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-F---EAHGVVPDIVTMAKGIG-NGIPLG  333 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~---~~~~~~pDivt~sK~~g-~G~pig  333 (480)
                      ++...+|++|.+..    .++|.++++++++ +|+||+|.+|.+.+ .... .   +..+...-+.+|||.++ +|+|+|
T Consensus       153 ~l~nP~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~-~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG  226 (360)
T PRK07392        153 LLNNPHNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPD-AEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLG  226 (360)
T ss_pred             EEeCCCCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCc-cccchHHHhhcCCCEEEEEechhhhcCCchhee
Confidence            55455777887765    6788889999985 66699999986554 2111 1   11112223347999999 999999


Q ss_pred             ccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEE
Q 011669          334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (480)
Q Consensus       334 ~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  413 (480)
                      |+++++++++.+....  ..++.+.+++.++.++|+   +..+.++.++..+..++.|.+..++++.+....+.|.++|+
T Consensus       227 ~~v~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~fl~~  301 (360)
T PRK07392        227 YAIAHPDRLQRWQQWR--DPWPVNGLAAAAAIAALA---DRDFQQQTWAWLPPAREALFQGLASLPGLTPLPSAANFLLV  301 (360)
T ss_pred             eeeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCCEEEE
Confidence            9999999988876533  347788999998888875   33444444333333344443333344433334466788887


Q ss_pred             EEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          414 EFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ++..          ...++.+.+ .++||.+.++..+    .+++||+.   .+.++.+++.+.|+++++
T Consensus       302 ~~~~----------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~---~~~~~~~~l~~al~~~~~  358 (360)
T PRK07392        302 QSQG----------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAV---RTEAENQRLLEALAAILA  358 (360)
T ss_pred             EcCC----------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEe---CCHHHHHHHHHHHHHHhh
Confidence            7631          135566665 5679999998544    36899993   345666777777776654

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.93  E-value=5.5e-24  Score=222.19  Aligned_cols=341  Identities=16%  Similarity=0.130  Sum_probs=205.9

Q ss_pred             CHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC------CCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEE
Q 011669          117 HPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIIS  189 (480)
Q Consensus       117 ~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~------~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~  189 (480)
                      +..+.+++.+.++........|. .....+|++.+++++      +.+.++|++|+|+++|+..+++.... .+++.|++
T Consensus        90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~-~~gD~Vlv  168 (481)
T PTZ00377         90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG-DPSDGVMI  168 (481)
T ss_pred             CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc-CCCCEEEE
Confidence            34677777766554321112233 234455555555553      23567899999999999999986641 25788999


Q ss_pred             EcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCceEEEEEcccCCCC
Q 011669          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVG  267 (480)
Q Consensus       190 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~  267 (480)
                      .+++|.++...+....             ...+.+|......|+.|    .+++++.++...  ..+++++++...+|++
T Consensus       169 ~~P~y~~y~~~~~~~g-------------~~~v~v~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~k~l~l~~P~NPT  231 (481)
T PTZ00377        169 PIPQYPLYSAAITLLG-------------GKQVPYYLDEEKGWSLD----QEELEEAYEQAVRNGITPRALVVINPGNPT  231 (481)
T ss_pred             CCCCchhHHHHHHHcC-------------CEEEEEEeccccCCCCC----HHHHHHHHHHHHhcCCCeeEEEEECCCCCC
Confidence            9999987765544332             22233332222234334    567777775311  1256654444457778


Q ss_pred             cceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC-CCcccccc--cCCCc------ce---eeecccc-c-cCcccc
Q 011669          268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-SHFWGFEA--HGVVP------DI---VTMAKGI-G-NGIPLG  333 (480)
Q Consensus       268 G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G-~~~~~~~~--~~~~p------Di---vt~sK~~-g-~G~pig  333 (480)
                      |.+ .+.+.+++|.++|++||+++|+||+|..+.+.+ ..+..+..  .+..+      .+   -+|||.+ + .|||+|
T Consensus       232 G~~-~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG  310 (481)
T PTZ00377        232 GQV-LTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGG  310 (481)
T ss_pred             CcC-CCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceE
Confidence            876 488999999999999999999999999875532 11111110  01111      23   3689986 6 699999


Q ss_pred             cccc---CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--h---hHHHHHHHHHHHHH---HHHHHHhHHhcCcee
Q 011669          334 AVVT---TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--K---DKLQNNAHVVGSYL---KERLTALKDKYGIIG  402 (480)
Q Consensus       334 ~v~~---~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--~---~~~~~~~~~~~~~l---~~~L~~l~~~~~~~~  402 (480)
                      |+++   ++++++.+.... ..+++.|++++.++.++|+...  +   +.+.++.++..+.+   ++.+.+..++++.+.
T Consensus       311 ~~~~~~~p~~li~~l~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~  389 (481)
T PTZ00377        311 YFELTNIPPEVREQIYKLA-SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVS  389 (481)
T ss_pred             EEEEeCCCHHHHHHHHHHh-heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence            9986   899988876543 2345788899999988885211  0   12333333332222   222223333344444


Q ss_pred             eEecc-ceeEEEEEecCCCcCCC-----CHHHHHHHHHHHHHcCceeeccCcCC-----CEEEEeCCCCCCHHHHHHHHH
Q 011669          403 DVRGR-GFLLGVEFVTDRQLKTP-----AKAETLYIMDKMKEMGVLVGKGGFYG-----NVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       403 ~v~g~-g~~~~i~~~~~~~~~~~-----~~~~~~~~~~~l~~~Gv~v~~~~~~~-----~~iRi~p~~~~t~~~id~~l~  471 (480)
                      ...+. |+++|+++.-.......     .......+...|.++||.+.||..|+     +++||+.  ..++++++++++
T Consensus       390 ~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~--~~~~e~l~~~l~  467 (481)
T PTZ00377        390 CQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITI--LPPEEQIEEMVK  467 (481)
T ss_pred             eecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEE--CCCHHHHHHHHH
Confidence            44454 56677655211000000     00012223456678899999986553     4899994  578899999999


Q ss_pred             HHHHHHhh
Q 011669          472 VMDYSLSK  479 (480)
Q Consensus       472 ~l~~~l~~  479 (480)
                      +|.+++++
T Consensus       468 rl~~~~~~  475 (481)
T PTZ00377        468 KIKEFHES  475 (481)
T ss_pred             HHHHHHHH
Confidence            99998764

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.93  E-value=6.7e-24  Score=217.04  Aligned_cols=350  Identities=14%  Similarity=0.105  Sum_probs=216.1

Q ss_pred             CCCCEEEeccCCcccc--cCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCCC------CCCEEEEeCC
Q 011669           96 ENGRRYLDAFGGIATV--CCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFFTNS  166 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~--~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~------~~~~v~f~~s  166 (480)
                      ..|..++|+..|.+..  .+ ..++.+.+++.+.+.....  ..| +.....++++.+++++..      +.++|++|+|
T Consensus        28 ~~~~~~i~l~~g~p~~~~~~-~~~~~~~~~~~~~l~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G  104 (403)
T TIGR01265        28 NPEKPIIPLSHGDPSVFGNL-RTDPEAEEAVKDALRSGKF--NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSG  104 (403)
T ss_pred             hcCCCeEEeCCCCCCccCCC-CCCHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecC
Confidence            3577899999887742  11 3568999999887764311  123 344456667777766642      3568999999


Q ss_pred             HHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       167 GseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      +++|+..+++...  .+++.|++.+++|.++...+...             |+....++......|+.|    .+++++.
T Consensus       105 ~t~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~  165 (403)
T TIGR01265       105 CSQAIEICIEALA--NPGANILVPRPGFPLYDTRAAFS-------------GLEVRLYDLLPEKDWEID----LDGLEAL  165 (403)
T ss_pred             hHHHHHHHHHHhC--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEecCCcccCCccC----HHHHHHH
Confidence            9999999998765  36778999999986543322211             222222221111122223    5667766


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC---Ccceeeec
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV---VPDIVTMA  323 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~---~pDivt~s  323 (480)
                      +.   + +++++++...++++|.+ .+.+.+++|.++|+++|+++|+||+|..|.+.+..+.......-   ..-+-+||
T Consensus       166 ~~---~-~~~~v~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  240 (403)
T TIGR01265       166 AD---E-KTVAIVVINPSNPCGSV-FSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGIS  240 (403)
T ss_pred             hC---c-CccEEEEecCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecc
Confidence            64   2 45555555556777765 47778999999999999999999999988655522212211111   12233799


Q ss_pred             cccc-cCccccccccC--HH-----HHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Q 011669          324 KGIG-NGIPLGAVVTT--PE-----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK  395 (480)
Q Consensus       324 K~~g-~G~pig~v~~~--~~-----~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~  395 (480)
                      |.++ .|+|+||++++  ++     +++.+.... ..+++.+.+++.++.++|+. ..+.+.++.++.....++.+.+..
T Consensus       241 K~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L  318 (403)
T TIGR01265       241 KRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLL-QRILGPATIVQGALPDILEN-TPQEFFDGKISVLKSNAELCYEEL  318 (403)
T ss_pred             cccCCCcceEEEEEEeCchhhhHHHHHHHHHHHh-hhhcCCChHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9976 79999999984  23     333332221 12456788888888888863 123333333333222333343333


Q ss_pred             HhcCceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHH
Q 011669          396 DKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       396 ~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~  471 (480)
                      +.++.+.. ....|+++|+++.....   +......++++.+ .++||.+.++..+  .+++||+.  ...++.++++++
T Consensus       319 ~~~~~~~~~~p~~g~f~~~~~~~~~~---~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~--~~~~~~l~~~l~  393 (403)
T TIGR01265       319 KDIPGLVCPKPEGAMYLMVKLELELF---PEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITI--TVPESMLEEACS  393 (403)
T ss_pred             hcCCCceecCCCceeEEEEecccccc---CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEe--cCCHHHHHHHHH
Confidence            33432332 34468888998743210   0000134566664 5789999998654  47899994  467899999999


Q ss_pred             HHHHHHhh
Q 011669          472 VMDYSLSK  479 (480)
Q Consensus       472 ~l~~~l~~  479 (480)
                      +|.+++++
T Consensus       394 ~l~~~~~~  401 (403)
T TIGR01265       394 RIKEFCER  401 (403)
T ss_pred             HHHHHHHh
Confidence            99998865

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.2e-23  Score=211.70  Aligned_cols=325  Identities=15%  Similarity=0.124  Sum_probs=213.3

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIM  176 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk  176 (480)
                      ++.++|+..|...  ++ .+|++++++.+.+....  ...|+.....+|++.|++++.... ++|++++|+++++..+++
T Consensus        25 ~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~--~~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~   99 (356)
T PRK04870         25 ATGMVKLDAMENP--YR-LPAELRAELGERLAEVA--LNRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL   99 (356)
T ss_pred             CCCceeCcCCCCC--CC-CCHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence            4678998777553  33 57899999998876421  123454556889999999986543 479999999999999887


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      +...  +++.|++.+++|.++...+...             |+..+.+|..  ..|+.|    .+++++.++.   .+++
T Consensus       100 ~~~~--~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~i~~~--~~~~~d----~~~l~~~~~~---~~~~  155 (356)
T PRK04870        100 ACAK--PGATVLAPEPGFVMYRMSAKLA-------------GLEFVGVPLT--ADFTLD----LPAMLAAIAE---HRPA  155 (356)
T ss_pred             HhcC--CCCEEEECCCCHHHHHHHHHHc-------------CCEEEEecCC--CCCCCC----HHHHHHHhhc---CCCC
Confidence            6543  6788999999998654432222             3344444322  123333    5677777752   2566


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCcccccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAV  335 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v  335 (480)
                      +|++...+|++|.+. +.+.+++|.++|   ++++|+||+|..|.... ........+...-+.+||| ++ .|+|+||+
T Consensus       156 ~v~l~~p~NPtG~~~-~~~~~~~i~~~~---~~~ii~De~y~~~~~~~-~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~  229 (356)
T PRK04870        156 LVFLAYPNNPTGNLF-DDADVERIIEAA---PGLVVVDEAYQPFAGDS-WLPRLARFPNLLVMRTVSK-LGLAGLRLGYL  229 (356)
T ss_pred             EEEEcCCCCCCCCCC-CHHHHHHHHHHC---CCEEEEECCchhhcCcc-hHHHHhhCCCEEEEecchh-hhhHHHhhhhh
Confidence            666665678888776 566666666666   78999999998875321 1111122222233447999 77 69999999


Q ss_pred             ccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       336 ~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                      ++++++++.+....  ..++.+.+++.++..+++..+. ++..+++++..+++.+.|+    +++.+......|.++|+.
T Consensus       230 i~~~~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~  303 (356)
T PRK04870        230 AGHPAWIAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALA----ALPGVTVFPSAANFILVR  303 (356)
T ss_pred             hCCHHHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH----hCCCcEECCCCCeEEEEE
Confidence            99999988876543  3456777888877777752111 1223333334444444443    343333345567788887


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      +.        .   ...+.+.|.++||.+.++..+    .+++||+..   +.++++.++++|++++
T Consensus       304 ~~--------~---~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~  356 (356)
T PRK04870        304 VP--------D---AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALKAAL  356 (356)
T ss_pred             CC--------C---HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHhC
Confidence            62        1   356778899999999987543    468999943   7899999999998763

>PRK09105 putative aminotransferase; Provisional

Probab=99.93  E-value=5.8e-24  Score=214.73  Aligned_cols=322  Identities=16%  Similarity=0.127  Sum_probs=208.3

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      +.++|+..|..  .++ .+|.+.+++.+.+...    ..|+.+...+|++.+++.++.+.++|++|+|+++++..++...
T Consensus        43 ~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~----~~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l  115 (370)
T PRK09105         43 EGAVFLNANEC--PLG-PSPAARDAAARSAALS----GRYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF  115 (370)
T ss_pred             CCcEEecCCCC--CCC-CCHHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH
Confidence            34556655543  233 5789999998876543    2355555889999999999878889999999999999999865


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                      ..  +++.|++.+++|.++...+...             |...+.+|...  .|..|    .+++++..    + +++++
T Consensus       116 ~~--~gd~Vli~~P~y~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~~----~-~~~~v  169 (370)
T PRK09105        116 TS--PTAGLVTADPTYEAGWRAADAQ-------------GAPVAKVPLRA--DGAHD----VKAMLAAD----P-NAGLI  169 (370)
T ss_pred             cC--CCCEEEEeCCChHHHHHHHHHc-------------CCeEEEecCCC--CCCCC----HHHHHhcC----C-CCCEE
Confidence            43  5788999999997765443322             33333333211  12223    34444331    2 34455


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcce---eeeccccc-cCccccc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI---VTMAKGIG-NGIPLGA  334 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDi---vt~sK~~g-~G~pig~  334 (480)
                      ++...+|++|.+. +.+.++++.+.|+ +|+++|+||+|..|+... ..  .+..+..+++   .+|||.+| .|+|+||
T Consensus       170 ~l~nP~NPTG~~~-~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~~-s~--~~~~~~~~~vi~~~SfSK~~g~~GlRiG~  244 (370)
T PRK09105        170 YICNPNNPTGTVT-PRADIEWLLANKP-AGSVLLVDEAYIHFSDAP-SV--VDLVAQRKDLIVLRTFSKLYGMAGMRLGL  244 (370)
T ss_pred             EEeCCCCCCCcCc-CHHHHHHHHHhCC-CCcEEEEECchHHhccCc-ch--HHHHhhCCCEEEEecccHhhcCCccceee
Confidence            5444467778764 6777777777654 599999999998775321 11  1111223343   37899998 7999999


Q ss_pred             cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                      +++++++++.+...   ..+..+.+++.++.++|+   ++++.+..++..+..++.+.+..+++++ ....+.|.|++++
T Consensus       245 ~v~~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~~~~~~f~~~~  317 (370)
T PRK09105        245 AAARPDLLAKLARF---GHNPLPVPAAAAGLASLR---DPKLVPQRRAENAAVREDTIAWLKKKGY-KCTPSQANCFMVD  317 (370)
T ss_pred             eecCHHHHHHHHhc---CCCCcCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-CcCCCCCcEEEEe
Confidence            99999998887654   234466777777777775   2344444443333444444433333432 2334567776665


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-FYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +..          ...++++.|.++||.++... ...+++||++.   +++++++++++|+++++
T Consensus       318 ~~~----------~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~~  369 (370)
T PRK09105        318 VKR----------PAKAVADAMAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFAKVMR  369 (370)
T ss_pred             CCC----------CHHHHHHHHHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHhh
Confidence            421          13568888999999995321 13579999933   68899999999998763

>PRK07337 aminotransferase; Validated

Probab=99.93  E-value=8.5e-24  Score=215.31  Aligned_cols=338  Identities=16%  Similarity=0.178  Sum_probs=211.1

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC----C--CCCCEEEEeCCHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNLKVVFFTNSGTEA  170 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~----~--~~~~~v~f~~sGseA  170 (480)
                      |..++||..|.+..   ..+|.+.+++.+.+....   ..|. .....+|++.+++++    +  .+.++|++|+|+++|
T Consensus        29 ~~~~i~l~~~~~~~---~~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~a  102 (388)
T PRK07337         29 GRDIIHMGIGEPDF---TAPEPVVEAAARALRRGV---TQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAA  102 (388)
T ss_pred             CCCEEEeCCcCCCC---CCCHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHH
Confidence            34568887776653   246889999988775321   1222 222445555555543    3  355789999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +..++....  .+++.|++.+++|.+........             |...+.+|......|+.|    .+++++.++  
T Consensus       103 l~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~----~~~l~~~~~--  161 (388)
T PRK07337        103 LLLACLALV--ERGDEVLMPDPSYPCNRHFVAAA-------------EGRPVLVPSGPAERFQLT----AADVEAAWG--  161 (388)
T ss_pred             HHHHHHHhc--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEeecCCccCCcCC----HHHHHhhcC--
Confidence            998887653  36788999999998754433222             222222222111123333    566766664  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee---eeccccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG  327 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv---t~sK~~g  327 (480)
                       + ++++|++...+|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+ .....  ....++++   +|||.++
T Consensus       162 -~-~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~--~~~~~~vi~~~S~SK~~~  235 (388)
T PRK07337        162 -E-RTRGVLLASPSNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDA-APVSA--LSLGDDVITINSFSKYFN  235 (388)
T ss_pred             -c-cceEEEEECCCCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCC-CCcCh--hhccCCEEEEEechhhcC
Confidence             2 445555544566777664 78889999999999999999999999886554 22111  11223443   7899998


Q ss_pred             -cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCcee-
Q 011669          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIG-  402 (480)
Q Consensus       328 -~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~-  402 (480)
                       .|+|+||+++++++++.+.........+.+++++.++.++++.-..+   ...+.+++..+++.+.|++    ++... 
T Consensus       236 ~~G~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~----~~~~~~  311 (388)
T PRK07337        236 MTGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALES----LGFKVP  311 (388)
T ss_pred             CchhheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHh----cCCccc
Confidence             79999999999998887765443344567788888887776421001   1222333333333333333    33322 


Q ss_pred             eEeccceeEEEEEecCCCcCCCCHHHHHHHHHH-HHHcCceeeccCcC-----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK-MKEMGVLVGKGGFY-----GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       403 ~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~~~-----~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      .....|+++|+++.....   +......++++. +.++||.+.+|..+     .+++||+..  .+++++.+++++|.++
T Consensus       312 ~~p~~g~f~~~~~~~~~~---~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~--~~~~~l~~~l~rl~~~  386 (388)
T PRK07337        312 VMPDGAFYVYADCRGVAH---PAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA--TSMSRLEEAVARLGKL  386 (388)
T ss_pred             cCCCeeEEEEEecccccC---CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence            124457889998843110   111123456655 56789999987543     368999955  5799999999999886


Q ss_pred             H
Q 011669          477 L  477 (480)
Q Consensus       477 l  477 (480)
                      +
T Consensus       387 l  387 (388)
T PRK07337        387 F  387 (388)
T ss_pred             h
Confidence            5

>PRK03321 putative aminotransferase; Provisional

Probab=99.93  E-value=8e-24  Score=212.73  Aligned_cols=323  Identities=17%  Similarity=0.151  Sum_probs=216.1

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar  179 (480)
                      .+|||..+...  +| .+|.+.+++.+.+...    ..|+.....++++.++++++.+.++|++++|.++++..++....
T Consensus        23 ~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~----~~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~   95 (352)
T PRK03321         23 GAIKLSSNETP--FG-PLPSVRAAIARAAAGV----NRYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATA   95 (352)
T ss_pred             cceeccCCCCC--CC-CCHHHHHHHHHHHHhc----CcCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhc
Confidence            47898877654  34 4678999998776543    23455678899999999987666789999999998888876543


Q ss_pred             hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEE
Q 011669          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (480)
Q Consensus       180 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi  259 (480)
                        .+++.|++..++|..+.... ..            .|...+.+|...  .++.|    .+++++.++    +++++|+
T Consensus        96 --~~gd~Vli~~p~y~~~~~~~-~~------------~g~~~~~v~~~~--~~~~~----~~~l~~~~~----~~~~~v~  150 (352)
T PRK03321         96 --GPGDEVIFAWRSFEAYPILV-QV------------AGATPVQVPLTP--DHTHD----LDAMAAAIT----DRTRLIF  150 (352)
T ss_pred             --CCCCEEEeCCCCHHHHHHHH-HH------------cCCEEEEccCCC--CCCCC----HHHHHHhhc----cCCCEEE
Confidence              36788998888875432211 11            133333333211  12223    566777664    2556676


Q ss_pred             EcccCCCCcceeCCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCccee---eeccccc-cCcccc
Q 011669          260 SESIQGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLG  333 (480)
Q Consensus       260 ~epi~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv---t~sK~~g-~G~pig  333 (480)
                      +...++++|.+.+    .+++.++|++  +|+++|+||+|.+|.+.+....+.......++++   +|||.+| .|+|+|
T Consensus       151 l~~p~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG  226 (352)
T PRK03321        151 VCNPNNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVG  226 (352)
T ss_pred             EeCCCCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhh
Confidence            6677888888875    5666777765  6999999999998865441111122222234444   7999999 799999


Q ss_pred             ccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEE
Q 011669          334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (480)
Q Consensus       334 ~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  413 (480)
                      |+++++++++.+...  ..+++.+++++.++.++|+.  .+.+.++.++..+.. +.+.+...++++ ...+..|+++|+
T Consensus       227 ~~v~~~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~--~~~~~~~~~~~~~~r-~~~~~~L~~~~~-~~~~~~g~~i~i  300 (352)
T PRK03321        227 YAVGHPEVIAALRKV--AVPFSVNSLAQAAAIASLAA--EDELLERVDAVVAER-DRVRAALRAAGW-TVPPSQANFVWL  300 (352)
T ss_pred             hhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHH-HHHHHHHHHCCC-ccCCCCCCEEEE
Confidence            999999999888754  35678889999988888852  334444444443322 223333333332 223456888888


Q ss_pred             EEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          414 EFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+..          ....+.+.|+++||.+.+.+  .+.|||+   ..+.+++++++++|++++..
T Consensus       301 ~l~~----------~~~~~~~~l~~~gI~v~~~~--~~~iRi~---~~~~~~~~~~~~al~~~~~~  351 (352)
T PRK03321        301 PLGE----------RTADFAAAAAEAGVVVRPFA--GEGVRVT---IGAPEENDAFLRAARAWRAG  351 (352)
T ss_pred             eCCC----------CHHHHHHHHHHCCEEEEccC--CCcEEEe---eCCHHHHHHHHHHHHHHhcc
Confidence            7621          14568888999999998743  4569999   46899999999999998754

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.3e-23  Score=211.17  Aligned_cols=323  Identities=17%  Similarity=0.167  Sum_probs=207.9

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~  177 (480)
                      ++.+|||..|...  ++ .+|.+.+++.+.+...   ...|+.....+|++.+++++..+.++|++|+|+++|+..+++.
T Consensus        23 ~~~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~---~~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~   96 (353)
T PRK05387         23 LAKLIKLNTNENP--YP-PSPKVLEAIRAALGDD---LRLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLA   96 (353)
T ss_pred             ccceeeccCCCCC--CC-CCHHHHHHHHHHhhhh---hhcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHH
Confidence            3568999888765  33 4789999998876642   1235555567899999999987778999999999999999987


Q ss_pred             HHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (480)
Q Consensus       178 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~  257 (480)
                      ...  +++.|++.+++|..+.......             |+....+|..  ..|+-|    .++++   +    .....
T Consensus        97 l~~--~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~---~----~~~~v  148 (353)
T PRK05387         97 FFN--HDRPLLFPDITYSFYPVYAGLY-------------GIPYEEIPLD--DDFSID----VEDYL---R----PNGGI  148 (353)
T ss_pred             hcC--CCCEEEEeCCCHHHHHHHHHHc-------------CCEEEEeecC--CCCCCC----HHHHH---h----cCCEE
Confidence            643  6788999999996554332211             2322222221  122223    34443   2    12234


Q ss_pred             EEEcccCCCCcceeCCCChHHHHHHHHHHh-CCEEEEcccccCccccCCCccc-ccccCCCcceeeeccccc-cCccccc
Q 011669          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKA-GGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTMAKGIG-NGIPLGA  334 (480)
Q Consensus       258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~tgfgr~G~~~~~-~~~~~~~pDivt~sK~~g-~G~pig~  334 (480)
                      ++++| +|++|.+.+    .+++.++++++ |+++|+||+|..|+..  .... .+..+...-+.+|||.++ .|+|+||
T Consensus       149 ~~~~P-~NPtG~~~~----~~~~~~l~~~~~~~~livDe~y~~~~~~--~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~  221 (353)
T PRK05387        149 IFPNP-NAPTGIALP----LAEIERILAANPDSVVVIDEAYVDFGGE--SAIPLIDRYPNLLVVQTFSKSRSLAGLRVGF  221 (353)
T ss_pred             EEeCC-CCCCCCCCC----HHHHHHHHHhCCCcEEEEeCcccccCCc--chHHHHhhCCCEEEEEehhHhhcchhhhcee
Confidence            45555 777787765    55556666554 9999999999877421  1111 111222222337999999 8999999


Q ss_pred             cccCHHHHHhhcCCCc-cccCCCcHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669          335 VVTTPEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~-~~t~~~~~~~~aaa~a~L~~i~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  412 (480)
                      +++++++++.+..... ..+++.+.+++.++.++|+..+ -++..+++++..+++.+.|++    ++. ......|.++|
T Consensus       222 ~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~-~~~~~~~~~~~  296 (353)
T PRK05387        222 AIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEA----LGF-EVLPSKANFVF  296 (353)
T ss_pred             eecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----CCC-eECCCcCcEEE
Confidence            9999999888765432 2456778888888888775211 012233344444444444443    333 22344566777


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +.+..         .....+.+.|.++||.+...+.  ..+++||+..   +++++++++++|++++.
T Consensus       297 ~~~~~---------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        297 ARHPS---------HDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA  352 (353)
T ss_pred             EECCC---------CCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence            66521         1145688889999999975432  2468999943   77999999999999875

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.93  E-value=5.1e-24  Score=213.21  Aligned_cols=320  Identities=20%  Similarity=0.199  Sum_probs=208.0

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC------CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEE
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP------GNLKVVFFTNSGTEANELAIMMARLYTGCNDIIS  189 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~------~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~  189 (480)
                      .+|.+++++.+ .................++++.+++.+.      ...+.+++++||++|+..+++.+..  .+++|++
T Consensus        12 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--~g~~vl~   88 (350)
T cd00609          12 PPPEVLEALAA-AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN--PGDEVLV   88 (350)
T ss_pred             CCHHHHHHHHH-HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC--CCCEEEE
Confidence            45666666654 1111111112223344445555554442      2256899999999999999987643  5678999


Q ss_pred             EcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcc
Q 011669          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (480)
Q Consensus       190 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  269 (480)
                      .+++|++........             +.....++....+.+..+    .+.++..+    .+++++|++++.++++|.
T Consensus        89 ~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~----~~~~~~~~----~~~~~~v~i~~~~~~tG~  147 (350)
T cd00609          89 PDPTYPGYEAAARLA-------------GAEVVPVPLDEEGGFLLD----LELLEAAK----TPKTKLLYLNNPNNPTGA  147 (350)
T ss_pred             cCCCchhHHHHHHHC-------------CCEEEEEecccccCCccC----HHHHHhhc----CccceEEEEECCCCCCCc
Confidence            999887755443322             122222222111111111    12333332    347899999999889998


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcc----cccccCCCcceeeeccccc-cCccccccccCH-HHHH
Q 011669          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW----GFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTP-EIAE  343 (480)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~----~~~~~~~~pDivt~sK~~g-~G~pig~v~~~~-~~~~  343 (480)
                      +. +.+.+++|.++|+++|+++|+||+|++++..+ ...    .....+....+.+++|.++ +|+++|++++++ ++.+
T Consensus       148 ~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~  225 (350)
T cd00609         148 VL-SEEELEELAELAKKHGILIISDEAYAELVYDG-EPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLE  225 (350)
T ss_pred             cc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCC-cccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHH
Confidence            65 67788999999999999999999999887655 222    1122233333447899999 889999999999 7888


Q ss_pred             hhcCCCccccCCCcHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHhHHhcCcee-eEeccceeEEEEEecCCC
Q 011669          344 VLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRGRGFLLGVEFVTDRQ  420 (480)
Q Consensus       344 ~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~v~g~g~~~~i~~~~~~~  420 (480)
                      .+.......+++.++.++.++.++|+...  -+...+++.++.+++++.|++.    +... .....|.++++.+...  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~g~~~~~~~~~~--  299 (350)
T cd00609         226 RLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKEL----GPLVVVKPSGGFFLWLDLPEG--  299 (350)
T ss_pred             HHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCccEEEEEecCCC--
Confidence            88766556677888888888888887652  2334455555566666655553    3222 3455677888776321  


Q ss_pred             cCCCCHHHHHHHHHHHHHcCceeeccCc----CCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          421 LKTPAKAETLYIMDKMKEMGVLVGKGGF----YGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       421 ~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                            .....+.+.|.+.||.+.++..    .++++||+++..  ++|+++++++|++
T Consensus       300 ------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~~  350 (350)
T cd00609         300 ------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLAE  350 (350)
T ss_pred             ------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhhC
Confidence                  1245567777888999987643    247899998866  9999999999863

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.93  E-value=1.7e-23  Score=200.00  Aligned_cols=350  Identities=12%  Similarity=0.103  Sum_probs=234.4

Q ss_pred             ccEEEeCCC--CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCC--CCCEEEEeC
Q 011669           90 MQYLFDENG--RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG--NLKVVFFTN  165 (480)
Q Consensus        90 G~~l~d~dG--~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~--~~~~v~f~~  165 (480)
                      .+.=||..+  ..+|-+--.....   -.+|+|++|+++.++.+..+.+....+...++.++.++++..  ..+.++|+.
T Consensus        14 ~s~KWd~~~g~~DvlPmWVADMDf---~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p   90 (388)
T COG1168          14 NSLKWDAHPGNEDVLPMWVADMDF---PTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVP   90 (388)
T ss_pred             CceeccccCCCCCcceeeeecccC---CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcC
Confidence            344455554  4454443322222   367999999999999865544422334677888888888753  456899999


Q ss_pred             CHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC-CCCCCChHHHHHHHH
Q 011669          166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGADGEMYAKDVQ  244 (480)
Q Consensus       166 sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~d~~~~~~~le  244 (480)
                      +.--++..+|+....  +++.|++..|.|+-.....-.             .|-..++.|..+. +.|.-|    .++||
T Consensus        91 ~VVpgi~~~I~~~T~--~gd~Vvi~tPvY~PF~~~i~~-------------n~R~~i~~pL~~~~~~y~iD----~~~LE  151 (388)
T COG1168          91 GVVPGISLAIRALTK--PGDGVVIQTPVYPPFYNAIKL-------------NGRKVIENPLVEDDGRYEID----FDALE  151 (388)
T ss_pred             cchHhHHHHHHHhCc--CCCeeEecCCCchHHHHHHhh-------------cCcEEEeccccccCCcEEec----HHHHH
Confidence            999999999997665  788999999999754432211             2333444444321 122223    78899


Q ss_pred             HHHHccCCCc-eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcc-----
Q 011669          245 DLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD-----  318 (480)
Q Consensus       245 ~~i~~~~~~~-~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pD-----  318 (480)
                      +.+..   ++ ...++|+|.|+ +|.+ .+++.|.+|.+||.|||+.+|+||++..+-..|.+.+.+.  .+.++     
T Consensus       152 ~~~~~---~~vkl~iLCnPHNP-~Grv-wt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a--~ls~~~a~~~  224 (388)
T COG1168         152 KAFVD---ERVKLFILCNPHNP-TGRV-WTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFA--SLSERFADNS  224 (388)
T ss_pred             HHHhc---CCccEEEEeCCCCC-CCcc-ccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchh--hcChhhhcce
Confidence            88874   34 45566666554 5544 6999999999999999999999999999987773333222  12222     


Q ss_pred             --eeeeccccc-cCccccccccC-HHHHHhhcCC-CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 011669          319 --IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       319 --ivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~-~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~  393 (480)
                        +.+-||+|+ +|+.+++++.+ +++.+.+... ...+..+.|.++..|..++.+.  .+.+++.+.+..+..++.+.+
T Consensus       225 it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~--G~~WLd~L~~yl~~N~~~~~~  302 (388)
T COG1168         225 ITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQ--GEPWLDELLEYLKDNRDYVAD  302 (388)
T ss_pred             EEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHH
Confidence              223479999 89999987766 5554444332 2345567789999999999884  445555555555545555544


Q ss_pred             hHHh-cCceeeEeccceeE-EEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHH
Q 011669          394 LKDK-YGIIGDVRGRGFLL-GVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDA  466 (480)
Q Consensus       394 l~~~-~~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~i  466 (480)
                      ...+ .|.+......|.++ |+++..-..       ...++.+.|+ +.+|.+.+|..|    .+++|++  +.++++-+
T Consensus       303 ~l~~~~P~v~v~~p~gTYL~WLD~r~l~l-------~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN--~acpr~~L  373 (388)
T COG1168         303 FLNKHLPGVKVTEPQGTYLAWLDCRELGL-------DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLN--FACPRAIL  373 (388)
T ss_pred             HHHhhCCCcEEecCCCceeeeeeccccCC-------ChHHHHHHHHHhhcEeccCCCccCcCCCceEEEe--cCCCHHHH
Confidence            4433 48888888898875 888754221       1234555554 447777766433    3789999  78999999


Q ss_pred             HHHHHHHHHHHhh
Q 011669          467 DYLVDVMDYSLSK  479 (480)
Q Consensus       467 d~~l~~l~~~l~~  479 (480)
                      ++++++|.++++.
T Consensus       374 ~eal~ri~~al~~  386 (388)
T COG1168         374 EEALERLKRALKK  386 (388)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999875

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.3e-23  Score=209.45  Aligned_cols=322  Identities=14%  Similarity=0.145  Sum_probs=212.4

Q ss_pred             eeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC---CCCCEEEE
Q 011669           87 DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFF  163 (480)
Q Consensus        87 ~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~---~~~~~v~f  163 (480)
                      +++|.+-+...|+..+|+..|...  +| .+|.+++++.+.+...  ....|+.+...+|++++++.+.   .+.++|++
T Consensus         7 ~~~~~~~~~~~~~~~i~l~~~~~~--~~-~p~~~~~~~~~~~~~~--~~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~i   81 (335)
T PRK14808          7 IAKRAYPYETEKRDRTYLALNENP--FP-FPEDLVDEVFRRLNSD--TLRIYYDSPDEELIEKILSYLDTDFLSKNNVSV   81 (335)
T ss_pred             hhccCcCCCCCCCceeEecCCCCC--CC-CCHHHHHHHHHHhhhh--hhhcCCCCChHHHHHHHHHHhCCCCCCcceEEE
Confidence            456666667788999999887654  44 4688999998876532  1133555567889999998886   55789999


Q ss_pred             eCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHH
Q 011669          164 TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV  243 (480)
Q Consensus       164 ~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l  243 (480)
                      |+|++|++..+++..      +.|++.+++|.++...+....             ...+.+|...  .+..+      +.
T Consensus        82 t~Ga~~~i~~~~~~~------d~v~v~~P~y~~~~~~~~~~g-------------~~~~~v~~~~--~~~~~------~~  134 (335)
T PRK14808         82 GNGADEIIYVMMLMF------DRSVFFPPTYSCYRIFAKAVG-------------AKFLEVPLTK--DLRIP------EV  134 (335)
T ss_pred             cCCHHHHHHHHHHHh------CcEEECCCCHHHHHHHHHHcC-------------CeEEEecCCC--cCCCC------hh
Confidence            999999999998754      469999999987766655443             2333333211  11111      11


Q ss_pred             HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccCCCcceeee
Q 011669          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTM  322 (480)
Q Consensus       244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~~~pDivt~  322 (480)
                        .+.     .++++++...+|++|.+..    .+++.+++ ++++++|+||+|..|.  +..... .+......-+.+|
T Consensus       135 --~~~-----~~~~i~i~nP~NPTG~~~s----~~~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~~vi~~~S~  200 (335)
T PRK14808        135 --NVG-----EGDVVFIPNPNNPTGHVFE----REEIERIL-KTGAFVALDEAYYEFH--GESYVDLLKKYENLAVIRTF  200 (335)
T ss_pred             --Hcc-----CCCEEEEeCCCCCCCCCcC----HHHHHHHH-hcCCEEEEECchhhhc--CCchHHHHHhCCCEEEEEec
Confidence              111     2355556556667777664    44555666 5899999999999883  212211 1222223334489


Q ss_pred             ccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669          323 AKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII  401 (480)
Q Consensus       323 sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~  401 (480)
                      ||.++ .|+|+||+++++++++.+....  .+++.+.+++.++.++++..  +.+.++.+...+. ++.+.+...+++ +
T Consensus       201 SK~~~l~GlRvG~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~-r~~l~~~L~~~g-~  274 (335)
T PRK14808        201 SKAFSLAAQRIGYVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHR--EIFEERTKFIVEE-RERMKSALREMG-Y  274 (335)
T ss_pred             hhhccCcccceEEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCH--HHHHHHHHHHHHH-HHHHHHHHHHCC-C
Confidence            99999 8999999999999998886543  34677788888888887632  2222222222222 333433333344 3


Q ss_pred             eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       402 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      ....+.|.|+|+.+...         ...++.+.|.++||++...   .+++||+   ..+.+++++++++|++
T Consensus       275 ~~~~~~g~f~~~~l~~~---------~~~~~~~~l~~~Gi~V~~~---~~~~Ris---i~~~~~~~~~~~~l~~  333 (335)
T PRK14808        275 RITDSRGNFVFIFMEKE---------EKERLLEHLRAKNIAVRSF---REGVRIT---IGKREENDMILKELEV  333 (335)
T ss_pred             EECCCCCeEEEEeCCCc---------cHHHHHHHHHHCCeEEEEC---CCCeEEe---cCCHHHHHHHHHHHHh
Confidence            33456788999887321         1356888899999999853   4689999   5578999999999975

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.93  E-value=7.9e-24  Score=210.69  Aligned_cols=305  Identities=21%  Similarity=0.231  Sum_probs=204.8

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      ...+||..|....    +.| +.++   ....    ...|+++...++++.++++++.+.+++++++|+++++..+.++.
T Consensus        17 ~~~~~~~~~~~~~----~~~-~~~~---~~~~----~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l   84 (330)
T TIGR01140        17 EDWLDFSTGINPL----GPP-VPPI---PASA----WARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL   84 (330)
T ss_pred             hheeEccccCCCC----CCC-hhhc---chHH----HhhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh
Confidence            3568888887432    224 2222   1111    12345555689999999999766788999999999999865542


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                         .++ +|++.+++|+.+......             .|+....++         |    .+++++.++.    ..+++
T Consensus        85 ---~~g-~vl~~~p~y~~~~~~~~~-------------~g~~~~~~~---------d----~~~l~~~~~~----~~~v~  130 (330)
T TIGR01140        85 ---APG-RVLVLAPTYSEYARAWRA-------------AGHEVVELP---------D----LDRLPAALEE----LDVLV  130 (330)
T ss_pred             ---CCC-eEEEeCCCcHHHHHHHHH-------------cCCEEEEeC---------C----HHHHHhhccc----CCEEE
Confidence               244 799999999876543321             144444443         1    4667766631    22444


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee---eeccccc-cCccccc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGA  334 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv---t~sK~~g-~G~pig~  334 (480)
                      ++.| +|++|.+ ++.+.+++|.++|++||+++|+||+|.+|.... .....  .+..++++   +|||.+| .|+|+||
T Consensus       131 i~~p-~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~--~~~~~~~i~~~S~SK~~g~~G~R~G~  205 (330)
T TIGR01140       131 LCNP-NNPTGRL-IPPETLLALAARLRARGGWLVVDEAFIDFTPDA-SLAPQ--AARFPGLVVLRSLTKFFGLAGLRLGF  205 (330)
T ss_pred             EeCC-CCCCCCC-CCHHHHHHHHHHhHhcCCEEEEECcccccCCcc-chhhH--hccCCCEEEEEecchhhcCchhhhhh
Confidence            5555 6677766 488899999999999999999999998875432 22211  11122333   8999999 8999999


Q ss_pred             cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                      +++++++++.+....  ..++.++++++++.+.|+   +.++.++.++..+..++.+.+..++++.+....+.|+|+|+.
T Consensus       206 i~~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~  280 (330)
T TIGR01140       206 VVAHPALLARLREAL--GPWTVNGPARAAGRAALA---DTAWQAATRARLAAERARLAALLARLGGLEVVGGTALFLLVR  280 (330)
T ss_pred             eeCCHHHHHHHHhcC--CCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCeEEEEE
Confidence            999999988887543  356677888887777765   445555555555666666666655666444445678888887


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCC----CEEEEeCCCCCCHHHHHHHHHHH
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG----NVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~----~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                      +..           ..++.+.|+++||.+.++..++    +++||+.  ....++ +.++.+|
T Consensus       281 ~~~-----------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~-~~~~~~l  329 (330)
T TIGR01140       281 TPD-----------AAALHEALARRGILIRDFDNFPGLDPRYLRFAL--PTDEEN-DRLEEAL  329 (330)
T ss_pred             cCC-----------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEe--cCHHHH-HHHHHhh
Confidence            631           3568899999999999986542    6899994  444444 7777765

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK09265 aminotransferase AlaT; Validated

Probab=99.93  E-value=1.8e-23  Score=214.03  Aligned_cols=345  Identities=14%  Similarity=0.109  Sum_probs=212.7

Q ss_pred             CCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC------CCCCCEEEEeCCH
Q 011669           96 ENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSG  167 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~------~~~~~~v~f~~sG  167 (480)
                      ..|+.++||..|... .++. .++++.+++.+.+...    ..|. .....+|++.+++.+      +.+.++|++++|+
T Consensus        30 ~~~~~~i~l~~g~p~-~~~~~~~~~i~~~~~~~~~~~----~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~  104 (404)
T PRK09265         30 EEGHKILKLNIGNPA-PFGFEAPDEILRDVIRNLPTA----QGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGV  104 (404)
T ss_pred             HcCCCeEEecCCCCC-cCCCCCCHHHHHHHHHHhhcC----CCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCCh
Confidence            356688999887654 3444 4678988888766532    1233 223456777777765      4556789999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++++..+++...  .+++.|++.+++|..+.......             |...+.++......|..|    .+++++.+
T Consensus       105 ~~~l~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~l~~~~  165 (404)
T PRK09265        105 SELIVMAMQALL--NNGDEVLVPAPDYPLWTAAVSLS-------------GGKPVHYLCDEEAGWFPD----LDDIRSKI  165 (404)
T ss_pred             HHHHHHHHHHhC--CCCCEEEEeCCCCcChHHHHHHc-------------CCEEEEEecccccCCCCC----HHHHHHhc
Confidence            999999988653  36788999999997655443222             222222211111122223    46677666


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-C--CCcceeeecc
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-G--VVPDIVTMAK  324 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-~--~~pDivt~sK  324 (480)
                      +    .+++++++...+|++|.+. +.+.+++|.++|++||+++|+||+|.+|-+.+......... .  ...-+-+|||
T Consensus       166 ~----~~~~~v~l~~P~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  240 (404)
T PRK09265        166 T----PRTKAIVIINPNNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSK  240 (404)
T ss_pred             c----ccceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchh
Confidence            4    2455555444567788764 77889999999999999999999999875444211111111 1  1122346899


Q ss_pred             ccc-cCcccccccc--CHH----HHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHH---HHHHHHHHHHHHHHH
Q 011669          325 GIG-NGIPLGAVVT--TPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQN---NAHVVGSYLKERLTA  393 (480)
Q Consensus       325 ~~g-~G~pig~v~~--~~~----~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~---~~~~~~~~l~~~L~~  393 (480)
                      .++ .|+|+||+++  +++    +++.+... ...+++.|.+++.++.++|...+. +.+.+   ++.+..    +.+.+
T Consensus       241 ~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r----~~~~~  315 (404)
T PRK09265        241 AYRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQR----DRAWE  315 (404)
T ss_pred             hccCcccceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHH----HHHHH
Confidence            996 7999999995  443    33333211 123566788888888888742111 11221   222223    33333


Q ss_pred             hHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHH
Q 011669          394 LKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADY  468 (480)
Q Consensus       394 l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~  468 (480)
                      ..++++.+... ...|+++|+.+.....   +.......+.+.|.++||++.++..|    .+++||+.  ..+++++++
T Consensus       316 ~L~~~~~~~~~~p~~g~~l~~~~~~~~~---~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~~  390 (404)
T PRK09265        316 LLNAIPGVSCVKPKGALYAFPKLDPKVY---PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLEE  390 (404)
T ss_pred             HHhcCCCCcccCCCcceEEEEEeccccc---CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHHH
Confidence            33334333323 3447788888743210   00012345677888999999987544    36899995  578999999


Q ss_pred             HHHHHHHHHhh
Q 011669          469 LVDVMDYSLSK  479 (480)
Q Consensus       469 ~l~~l~~~l~~  479 (480)
                      ++++|.++++.
T Consensus       391 ~l~rl~~~l~~  401 (404)
T PRK09265        391 AIGRIGRFLSG  401 (404)
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.93  E-value=2.1e-24  Score=208.16  Aligned_cols=335  Identities=16%  Similarity=0.152  Sum_probs=223.3

Q ss_pred             CCHHHHHHHHHHHHhc-cc--cccccCChHHHHHHHHHHHhCCC---CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEE
Q 011669          116 CHPYVVDSIVNQIKRI-QH--STVLYLNHAIADFAEALASKMPG---NLKVVFFTNSGTEANELAIMMARLYTGCNDIIS  189 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~-~~--~~~~~~~~~~~~l~e~L~~~~~~---~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~  189 (480)
                      .+.-|.+++++.+... .|  +.+.+..+....|++++++.++.   ..++|++|+++.||+..++.....  .++.||+
T Consensus        45 ~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~--~GDeVii  122 (420)
T KOG0257|consen   45 PPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN--PGDEVIV  122 (420)
T ss_pred             CcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC--CCCEEEE
Confidence            4556788888877664 22  22334456667788888885542   356899999999999998887655  7899999


Q ss_pred             EcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcc
Q 011669          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (480)
Q Consensus       190 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  269 (480)
                      ++|.|..+........+.+.+...-+..|-       .+...|..|    .+++|..+.    +++++|+++..+|++|.
T Consensus       123 ~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~-------~~s~~~~~D----~~~le~~~t----~kTk~Ii~ntPhNPtGk  187 (420)
T KOG0257|consen  123 FEPFFDCYIPQVVMAGGTPVFVPLKPKEGN-------VSSSDWTLD----PEELESKIT----EKTKAIILNTPHNPTGK  187 (420)
T ss_pred             ecCcchhhhhHHhhcCCcceeecccccccc-------ccCccccCC----hHHHHhhcc----CCccEEEEeCCCCCcCc
Confidence            999999998888877765433222111111       122334445    578888886    36788888888888887


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc----ccCCCcceeeeccccc-cCccccccccCHHHHHh
Q 011669          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE----AHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEV  344 (480)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~----~~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~  344 (480)
                      + .+++.|++|++||++||+++|+||||.-+..+|.++..+.    .++.+..+.++||.+| .|||+||+++++.++..
T Consensus       188 v-fsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~  266 (420)
T KOG0257|consen  188 V-FSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSA  266 (420)
T ss_pred             c-cCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhh
Confidence            7 4899999999999999999999999998877774222221    1234555668999999 79999999998888877


Q ss_pred             hcCCCccccCCCcHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQ----------KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       345 l~~~~~~~t~~~~~~~~aaa~a~L~~i~----------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                      +........|..+...+.|..+++..-.          .+++....++.++.+.+.|.++    +........+.++|.+
T Consensus       267 ~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l----g~~v~~p~gayyl~ad  342 (420)
T KOG0257|consen  267 LFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL----GLKVTGPEGAYYLWAD  342 (420)
T ss_pred             HHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCceEEEEe
Confidence            7766555666666666666666654322          0124445556666666666665    3222233345567888


Q ss_pred             EecCCCcCCCCH----HHHHHHHH-HHHHcCceeeccCcCC---------CEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          415 FVTDRQLKTPAK----AETLYIMD-KMKEMGVLVGKGGFYG---------NVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       415 ~~~~~~~~~~~~----~~~~~~~~-~l~~~Gv~v~~~~~~~---------~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      +.....-..+..    ...-.+.+ .+.+.|+.+.|+..|+         +.+|++  ++-+++.++.++++|+
T Consensus       343 fs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~--~~k~~~~L~~a~e~l~  414 (420)
T KOG0257|consen  343 FSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFC--FCKADETLRKAIERLK  414 (420)
T ss_pred             ccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHH--HHhhHHHHHHHHHHHh
Confidence            862211100100    01122334 4557799888865432         467777  7888899999999887

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.93  E-value=7.7e-24  Score=217.01  Aligned_cols=343  Identities=14%  Similarity=0.089  Sum_probs=206.3

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--ccccc-CChHHHHHHHHHHHhC------CCCCCEEEEeCCHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLY-LNHAIADFAEALASKM------PGNLKVVFFTNSGT  168 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--~~~~~-~~~~~~~l~e~L~~~~------~~~~~~v~f~~sGs  168 (480)
                      |..++|+..|....  + .+|.+.+++.+.+.+...  ....| +.....+|++++++++      +.+.++|++|+|++
T Consensus        33 ~~~~i~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~  109 (409)
T PRK07590         33 EAKIIRLGIGDVTQ--P-LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK  109 (409)
T ss_pred             CCceEEecCcCCCC--C-CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence            55678888877654  2 468899999988775321  11123 3444556666666653      45678999999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCe--eEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV--HHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~--~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      +++...+.+   ..+++.|++.+|+|.++...+........ .  . ..|.  ..+++|......|..|       ++  
T Consensus       110 ~al~~l~~~---~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~-~--~-~~~~~~~~~~v~~~~~~~~~~d-------~~--  173 (409)
T PRK07590        110 CDTGNILDI---FGPDNTIAVTDPVYPVYVDTNVMAGRTGE-A--N-EDGRYSGIVYLPCTAENNFVPE-------LP--  173 (409)
T ss_pred             HHHHHHHHh---cCCCCEEEEeCCCCcchHHHHHHcCCccc-c--c-ccccccceeEeecccccCCccc-------Cc--
Confidence            999875432   34778999999999887655444332100 0  0 0000  0122221111112111       11  


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc----CCCcceeee
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTM  322 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~----~~~pDivt~  322 (480)
                           ..++++|++...||++|.+. +.+.+++|.++|++||++||+||+|..|-..+.....+...    +....+-||
T Consensus       174 -----~~~~k~i~l~nP~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~Sf  247 (409)
T PRK07590        174 -----EEKVDIIYLCFPNNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSF  247 (409)
T ss_pred             -----ccCceEEEEeCCCCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecC
Confidence                 12455555545577778764 88899999999999999999999999885444111111111    122334489


Q ss_pred             ccccc-cCccccccccCHHHHHhhc-----------CCCccccC-CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011669          323 AKGIG-NGIPLGAVVTTPEIAEVLT-----------RRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE  389 (480)
Q Consensus       323 sK~~g-~G~pig~v~~~~~~~~~l~-----------~~~~~~t~-~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~  389 (480)
                      ||.++ .|+|+||+++++++++.+.           ......++ +.+.+++.++.++|+.- .+.+.+++++.-+..++
T Consensus       248 SK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~  326 (409)
T PRK07590        248 SKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPE-GKAQIKELIDYYMENAK  326 (409)
T ss_pred             ccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHH
Confidence            99998 8999999999999886321           01112233 46778888887777421 12233333322222233


Q ss_pred             HHHHhHHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCH
Q 011669          390 RLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTK  463 (480)
Q Consensus       390 ~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~  463 (480)
                      .+.+..+.++ +....+ .|+++|+++...        .....+++.|+ +.||++.++..|    .+++||+  +..++
T Consensus       327 ~l~~~L~~~~-~~~~~~~g~~f~wi~~~~~--------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~  395 (409)
T PRK07590        327 IIREGLESAG-FEVYGGVNAPYIWVKTPDG--------MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--AFGSR  395 (409)
T ss_pred             HHHHHHHhcC-CceecCCcceEEEEECCCC--------CCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--ccCCH
Confidence            3333333333 222333 467889987421        11345666665 579999987543    3589999  46789


Q ss_pred             HHHHHHHHHHHHHH
Q 011669          464 EDADYLVDVMDYSL  477 (480)
Q Consensus       464 ~~id~~l~~l~~~l  477 (480)
                      +++++++++|.+++
T Consensus       396 ~~l~~~l~rl~~~~  409 (409)
T PRK07590        396 ENVLEAMERIKKAL  409 (409)
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999998753

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=2.7e-23  Score=210.30  Aligned_cols=328  Identities=16%  Similarity=0.124  Sum_probs=211.8

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~  177 (480)
                      +..++||..|...  +| .+|.+.+++.+.....    ..|.+..-.+|++.++++++.+.++|++++|+++++..++..
T Consensus        35 ~~~~i~l~~~~~~--~~-~~~~~~~al~~~~~~~----~~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~  107 (371)
T PRK05166         35 VPRIAKLGSNENP--LG-PSPAVRRAFADIAELL----RLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRA  107 (371)
T ss_pred             CcceEEcCCCCCC--CC-CCHHHHHHHHHHHHHh----hcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHH
Confidence            4478999887654  45 5688998887654432    234433334899999999877778899999999999988876


Q ss_pred             HHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (480)
Q Consensus       178 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~  257 (480)
                      ..  .+++.|++.+++|.+........             |+....++...  .++-|    .+++++.++.    ++++
T Consensus       108 ~~--~~gd~vli~~P~y~~~~~~~~~~-------------g~~~~~v~~~~--~~~~~----~~~l~~~~~~----~~~~  162 (371)
T PRK05166        108 VL--RPGDRVVTLYPSFPLHEDYPTMM-------------GARVERVTVTP--DLGFD----LDALCAAVAR----APRM  162 (371)
T ss_pred             hc--CCCCEEEEcCCChHHHHHHHHHc-------------CCeEEEeecCC--CCCCC----HHHHHHhhhc----CCCE
Confidence            53  36788999999997654332211             33333332211  12223    5677777653    3455


Q ss_pred             EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-CCC---cceeeeccccc-cCccc
Q 011669          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVV---PDIVTMAKGIG-NGIPL  332 (480)
Q Consensus       258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-~~~---pDivt~sK~~g-~G~pi  332 (480)
                      |++...+|++|.+. +.+.+++|.++|++ ++++|+||+|..|...+......... ...   .-+.||||.++ +|+|+
T Consensus       163 v~l~~p~NPtG~~~-~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRi  240 (371)
T PRK05166        163 LMFSNPSNPVGSWL-TADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRV  240 (371)
T ss_pred             EEEeCCCCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhhe
Confidence            66655677788775 66777888888764 89999999998875322111111111 111   22337999999 89999


Q ss_pred             ccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeE
Q 011669          333 GAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (480)
Q Consensus       333 g~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  411 (480)
                      ||+++ ++++++.+....  ..++.|.+++.++.++|.   .+++.++..+.....++.+.+..++++. ....+.|+++
T Consensus       241 G~~i~~~~~l~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~p~~g~fl  314 (371)
T PRK05166        241 GYGLVSDPELVGLLDRVR--TPFNVNGAAQAAALAALD---DEEHLAKGVALALAERERLKKELAEMGY-RIAPSRANFL  314 (371)
T ss_pred             eeeecCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCcC-eeCCCcCCEE
Confidence            99775 688887775432  346678888888887775   2233333333333333334444444443 2345668888


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      |+.+..          ...++.+.|+++||.+.++..+  .+++||+..   +.++.+++++.|++++.
T Consensus       315 ~~~~~~----------~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~~l~~i~~  370 (371)
T PRK05166        315 FFDARR----------PASAVAEALLRQGVIVKPWKQPGFETFIRVSIG---SPEENDHFVAALDKVLE  370 (371)
T ss_pred             EEeCCC----------CHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHhh
Confidence            887521          1356888899999999987432  578999943   67788888888887653

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.92  E-value=2.7e-23  Score=206.81  Aligned_cols=308  Identities=15%  Similarity=0.073  Sum_probs=200.0

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      ..++|+.++.  +++|...+.+.+   ..+.       .|+.+. .+|++.|++++.  .++|++|+|++||+..++.  
T Consensus        20 ~~~i~l~~ne--~p~~~~~~~~~~---~~~~-------~yp~~~-~~Lr~~ia~~~~--~~~I~it~Gs~~al~~~~~--   82 (330)
T PRK05664         20 ADWLDLSTGI--APWPWPVPAIPA---DAWA-------RLPETD-DGLEAAARAYYG--APQLLPVAGSQAAIQALPR--   82 (330)
T ss_pred             HHheeecCCc--CCCCCCCcccCH---HHHH-------hCCCCh-HHHHHHHHHHhC--CCCEEECcCHHHHHHHHHH--
Confidence            3578888886  344655444322   1222       234333 789999999985  4789999999999988753  


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                        ..+++.|++.+++|.+....+...             |...+.+|              .+++++.++    +....+
T Consensus        83 --~~~gd~v~v~~P~y~~~~~~~~~~-------------g~~~~~v~--------------~~~~~~~~~----~~~~v~  129 (330)
T PRK05664         83 --LRAPGRVGVLSPCYAEHAHAWRRA-------------GHQVRELD--------------EAEVEAALD----SLDVLV  129 (330)
T ss_pred             --ccCCCEEEEcCCChHHHHHHHHHc-------------CCeEEEec--------------hhhHhhhhc----CCCEEE
Confidence              136788999999998776554433             33333332              134555553    122467


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCcccccccc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVT  337 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v~~  337 (480)
                      +++|. |++|.+. +.+.+++|.++|+++|+++|+||+|.++.... ........+...-+-||||.+| .|+|+||+++
T Consensus       130 l~nP~-NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~-s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~  206 (330)
T PRK05664        130 VVNPN-NPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQH-SLAACAHRPGLIVLRSFGKFFGLAGARLGFVLA  206 (330)
T ss_pred             EeCCc-CCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCcc-cccccccCCCEEEEeeccccccCCCcceEEEEe
Confidence            77775 6677664 78889999999999999999999998774222 2222221111222448999999 8999999999


Q ss_pred             CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEec
Q 011669          338 TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT  417 (480)
Q Consensus       338 ~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~  417 (480)
                      ++++++.+....  .+++.+.+++.++.++|+..   .+.++.++.....++.+.+..++++. ....+.++++|+.+. 
T Consensus       207 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~L~~~---~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~~~~~~f~~~~~~-  279 (330)
T PRK05664        207 EPALLRALAELL--GPWTVSGPTRWLAQAALADT---PWQRRQRERLLAASQRLAALLRRHGL-TPAGGCALFQWVRTE-  279 (330)
T ss_pred             CHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHHHHHHHHHCCC-cccCCcceEEEEecC-
Confidence            999988876543  34566788888888888632   22233333333333334333333432 112233366666541 


Q ss_pred             CCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          418 DRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                                ....+.+.|.++||++...+ ..+++||+..  .+++++++++++|++..++
T Consensus       280 ----------~~~~~~~~l~~~gi~v~~f~-~~~~iRis~~--~~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        280 ----------DAAALHEFLARRGILTRLFE-QPASLRFGLP--ADEADWARLDQALLAYRKE  328 (330)
T ss_pred             ----------CHHHHHHHHHHCCeEEEECC-CCCeEEEECC--CCHHHHHHHHHHHHHHHhh
Confidence                      14677888999999998643 3578999943  4788899999999887654

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.92  E-value=1.9e-23  Score=210.82  Aligned_cols=341  Identities=16%  Similarity=0.162  Sum_probs=213.3

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHH--hccccccccC-ChHHHHHHHHHHHhCC------CCCC-EEEEeCCHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIK--RIQHSTVLYL-NHAIADFAEALASKMP------GNLK-VVFFTNSGTE  169 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~--~~~~~~~~~~-~~~~~~l~e~L~~~~~------~~~~-~v~f~~sGse  169 (480)
                      ++|||.+|....  +++||.+.+++.+..+  ........|. .....+|++.+++++.      .+.+ .|+++++..+
T Consensus         2 ~~I~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~   79 (363)
T PF00155_consen    2 DVINLGSNAPLL--LSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA   79 (363)
T ss_dssp             TEEESSSSSTSS--TTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred             CEEEEECCCCCC--cccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence            478888776554  4456666665555443  1112223444 3458889999998875      4456 6777766666


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      ++..++.+.+ ..+++.|++.+++|.+....+...             |...+++|......|..|    .++|++.+++
T Consensus        80 ~~~~~~~~~~-~~~~~~vlv~~P~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~~  141 (363)
T PF00155_consen   80 ALFLLLRLLK-INPGDTVLVPDPCYPSYIEAARLL-------------GAEVIPVPLDSENDFHLD----PEALEEALDE  141 (363)
T ss_dssp             HHHHHHHHHH-SSTTSEEEEEESSSTHHHHHHHHT-------------TSEEEEEEEEETTTTEET----HHHHHHHHHT
T ss_pred             chhhhhhccc-ccccccceecCCcccccccccccc-------------Cceeeecccccccccccc----cccccccccc
Confidence            6666655543 336788999999997765444332             222333331111223334    6778888875


Q ss_pred             cCCC--ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccCCCcc---eeeec
Q 011669          250 GTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPD---IVTMA  323 (480)
Q Consensus       250 ~~~~--~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~~~pD---ivt~s  323 (480)
                      ...+  ++.+|++...++++|.+. +.+.+++|.++|++||+++|+||+|.++......++. ....+..++   +-++|
T Consensus       142 ~~~~~~~~~~v~~~~p~nPtG~~~-~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  220 (363)
T PF00155_consen  142 LPSKGPRPKAVLICNPNNPTGSVL-SLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLS  220 (363)
T ss_dssp             SHTTTETEEEEEEESSBTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEEST
T ss_pred             ccccccccceeeeccccccccccc-ccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecc
Confidence            3222  356777777788888764 8888999999999999999999999987544311111 111222223   33789


Q ss_pred             cccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGII  401 (480)
Q Consensus       324 K~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~  401 (480)
                      |.+| .|+|+||+++++++++.+.....  .+..+.+.+.++.+.+..... +++.++.++.-+..++.+.+..++.+..
T Consensus       221 K~~g~~GlRvG~i~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~  298 (363)
T PF00155_consen  221 KSFGLPGLRVGYIVAPPELIERLRRFQR--SGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGIT  298 (363)
T ss_dssp             TTTTSGGGTEEEEEEEHHHHHHHHHHHH--HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred             ccccccccccccccchhhhhhhhhhccc--cccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhh
Confidence            9999 79999999999999988875432  333366777777766653321 1122333333333333333333333433


Q ss_pred             eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       402 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                      ......|.++|+.+...         ....+.+.|+++ ||.+.++..+  .+++||+. ..++++++++++++|
T Consensus       299 ~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  299 VLPPEAGFFLWVRLDPN---------DAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             EEHHSBSSEEEEEESHH---------HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             eeeccCccEEEEEcccc---------hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence            33333577777776321         356788888888 9999987443  47899996 479999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.92  E-value=2.2e-22  Score=184.48  Aligned_cols=359  Identities=17%  Similarity=0.168  Sum_probs=242.0

Q ss_pred             HHHHHHHHhhhcCCcc-----ccccCCCeEEEeeeccEEEeCCC--CEEEeccCCcccccCCC-CCHHHHHHHHHHHHhc
Q 011669           60 ADEILAKRKTFLSPSL-----FHLYSKPLNVVDGKMQYLFDENG--RRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRI  131 (480)
Q Consensus        60 ~~~~~~~~~~~~~~~~-----~~~~~~p~~~~~g~G~~l~d~dG--~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~  131 (480)
                      .++.+.+.+.++....     ...|+.-.++.+.+|..+. ++|  +.+|.|+++.+   ||- +||+|.+|..++++++
T Consensus        22 ~q~~~~q~r~~l~~~legi~gagtwk~erVi~s~q~p~i~-v~G~~k~ilnFcaNnY---LGLsshPeii~a~~~aleey   97 (417)
T KOG1359|consen   22 AQEAIAQLRAILGDELEGIKGAGTWKRERVITSRQGPTIQ-VKGSDKKILNFCANNY---LGLSSHPEIINAGQKALEEY   97 (417)
T ss_pred             hHHHHHHHHHhccCccceecccccceeeeEEeecccceEE-Eeccccceeeeccccc---ccccCChHHHHHHHHHHHHh
Confidence            3455566565554322     1235667889999999874 555  68999987754   344 5899999999999986


Q ss_pred             ccccc-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccccccccc
Q 011669          132 QHSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATA  206 (480)
Q Consensus       132 ~~~~~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~  206 (480)
                      +....     .++......|..+|+++..  -+..++..|+-.||..++.....  +.+- |..+--.|......+.+..
T Consensus        98 GaGlssvrfIcGtq~iHk~LE~kiAqfh~--rED~ilypscfdANag~feail~--pedA-vfSDeLNhASIIdGirLck  172 (417)
T KOG1359|consen   98 GAGLSSVRFICGTQDIHKLLESKIAQFHG--REDTILYPSCFDANAGAFEAILT--PEDA-VFSDELNHASIIDGIRLCK  172 (417)
T ss_pred             CCCccceeEEecchHHHHHHHHHHHHHhC--CCceEEeccccccchHHHHHhcC--hhhh-hhccccccchhhhhhHHHh
Confidence            53221     3456777889999999874  46678999999999998876532  4333 3334455555544444332


Q ss_pred             CCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH
Q 011669          207 QSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK  286 (480)
Q Consensus       207 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~  286 (480)
                          +                |+.   -|    ..+++.-+....+-+.+.|..+.+.++.|.+.|    |++|.+|++|
T Consensus       173 ----r----------------y~h---~d----v~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~k  221 (417)
T KOG1359|consen  173 ----R----------------YRH---VD----VFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKK  221 (417)
T ss_pred             ----h----------------hcc---ch----hHHHHHHHHHhhhheEEEEEecceeccCCCccc----HHHHHHHHHh
Confidence                0                110   12    233443332222347889999999999999998    9999999999


Q ss_pred             hCCEEEEccccc-Cc-cccCCCcccccccCC--Cccee--eeccccccCccccccccCHHHHHhhcCCCccccCC--CcH
Q 011669          287 AGGLCIADEVQA-GF-ARTGSHFWGFEAHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFG--GNP  358 (480)
Q Consensus       287 ~gillI~DEv~t-gf-gr~G~~~~~~~~~~~--~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~--~~~  358 (480)
                      ||.++++||.+. || |.+| . ..-+.+++  .+|++  |++|++||. --||..++.++++.++++...+-|+  -+|
T Consensus       222 YgaLlfiDecHaTgf~G~tG-r-Gt~E~~~vm~~vdiinsTLgKAlGga-~GGyttgp~~li~llrqr~RpylFSnslpp  298 (417)
T KOG1359|consen  222 YGALLFIDECHATGFFGETG-R-GTAEEFGVMGDVDIINSTLGKALGGA-SGGYTTGPKPLISLLRQRSRPYLFSNSLPP  298 (417)
T ss_pred             cCcEEEEeecccceeecCCC-C-ChHHHhCCCCcceehhhhhhhhhcCC-CCCCccCChhHHHHHHhcCCceeecCCCCh
Confidence            999999999984 43 5555 2 12345564  56666  899999841 1278999999999888765444443  344


Q ss_pred             HHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCC----CCHHHHHHHH
Q 011669          359 VCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT----PAKAETLYIM  433 (480)
Q Consensus       359 ~~~aaa~a~L~~i~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~----~~~~~~~~~~  433 (480)
                      .....+.++++.+. ......+.+.+.+++++.++..                 ++.+.....+..    -+...+..+.
T Consensus       299 avV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~a-----------------GftIsg~~hPI~pv~lGda~lA~~~a  361 (417)
T KOG1359|consen  299 AVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAA-----------------GFTISGASHPICPVMLGDARLASKMA  361 (417)
T ss_pred             hhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-----------------CceecCCCCCccceecccHHHHHHHH
Confidence            44555566666554 4567778888888888887664                 111211111111    1345678899


Q ss_pred             HHHHHcCceeeccC-----cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          434 DKMKEMGVLVGKGG-----FYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       434 ~~l~~~Gv~v~~~~-----~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +.|+++|+++..-.     .....||+..+..+|+||||++++++.++.+
T Consensus       362 d~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr  411 (417)
T KOG1359|consen  362 DELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGR  411 (417)
T ss_pred             HHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHH
Confidence            99999999985321     1246799999999999999999999998765

>PLN02672 methionine S-methyltransferase

Probab=99.92  E-value=7.7e-23  Score=223.80  Aligned_cols=355  Identities=9%  Similarity=0.053  Sum_probs=220.4

Q ss_pred             EEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC---EEEEeCCHHH
Q 011669           93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK---VVFFTNSGTE  169 (480)
Q Consensus        93 l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~---~v~f~~sGse  169 (480)
                      +.+.+|..+|++..|....  + .+|.|.+++.+.+.+..+  ..+..+...++++++++.++.+.+   +|++++|+++
T Consensus       691 ~~~~~g~~vI~LsinE~d~--p-pPp~V~eAi~eal~~~~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~e  765 (1082)
T PLN02672        691 VSGSQESSLIHMDVDESFL--P-VPSAVKASIFESFVRQNI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLA  765 (1082)
T ss_pred             CcccCCCCEEEEeCCCCCC--C-CCHHHHHHHHHHHhhcCC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHH
Confidence            4566788899998887654  4 678999999887765422  122345678899999998765443   7999999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      ++..+++....  +++.|++..|+|..+...+...             |...+.+|......|..|    .++++++++.
T Consensus       766 lL~lll~aLl~--pGD~VLVp~PtY~~Y~~~a~~~-------------Ga~vv~Vpl~~e~gf~lD----~d~Le~al~~  826 (1082)
T PLN02672        766 LFNKLVLCCVQ--EGGTLCFPAGSNGTYVSAAKFL-------------KANFRRIPTKSSDGFKLT----AKTLASTLET  826 (1082)
T ss_pred             HHHHHHHHHcC--CCCEEEEeCCChHHHHHHHHHc-------------CCEEEEEecccccCCCCC----HHHHHHHhcc
Confidence            99888876544  6789999999998776655433             233333332212234334    5677777752


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC--ccccc----cc-C-----CCc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH--FWGFE----AH-G-----VVP  317 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~--~~~~~----~~-~-----~~p  317 (480)
                      .  ...+.++++|.+|++|.+ ++++.+++|.++|++||+++|+||+|.++-+.+..  .+.+.    .+ .     ...
T Consensus       827 ~--~~~~I~L~nPnhNPTG~v-~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVI  903 (1082)
T PLN02672        827 V--KKPWVYISGPTINPTGLL-YSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVA  903 (1082)
T ss_pred             C--CCCEEEEECcCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEE
Confidence            1  234678888876778876 58999999999999999999999999987665521  11111    11 1     011


Q ss_pred             ceeeeccccc-cCccccccccCH-HHHHhhcCCCccc-cCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHH
Q 011669          318 DIVTMAKGIG-NGIPLGAVVTTP-EIAEVLTRRNYFN-TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY---LKERL  391 (480)
Q Consensus       318 Divt~sK~~g-~G~pig~v~~~~-~~~~~l~~~~~~~-t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~---l~~~L  391 (480)
                      -+-+|||.++ +|+|+||+++++ ++++.+....... .+..+.+++++++++++. +...+.+++++..+.   .++.+
T Consensus       904 vL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~-~~~~~~~~l~e~r~~Lk~rRd~L  982 (1082)
T PLN02672        904 LLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQ-KSSDLLDGVAEQKKILKSRAERL  982 (1082)
T ss_pred             EEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHH
Confidence            2237899999 699999999964 4888776432111 122233333333333310 122333333333222   22233


Q ss_pred             HHhHHhcCceeeEecc-ceeEEEEEecCCC--c--CCCC-----HHHHHHHHHHHHHc-CceeeccCcC--CCEEEEeCC
Q 011669          392 TALKDKYGIIGDVRGR-GFLLGVEFVTDRQ--L--KTPA-----KAETLYIMDKMKEM-GVLVGKGGFY--GNVFRITPP  458 (480)
Q Consensus       392 ~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~--~--~~~~-----~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~p~  458 (480)
                      .+..+++++ ...++. |+++|+.+..-..  .  ..+.     ......+++.|+++ ||.+.||..+  .+++||+  
T Consensus       983 ~e~L~~~Gi-~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIs-- 1059 (1082)
T PLN02672        983 KETLEACGW-DVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFS-- 1059 (1082)
T ss_pred             HHHHHHCCC-eEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEE--
Confidence            333333443 334444 5556665421000  0  0000     11246688888765 9999998543  3789999  


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 011669          459 LCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~l~  478 (480)
                      ++.+++++++++++|.+...
T Consensus      1060 fa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1060 FALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             ecCCHHHHHHHHHHHHHHHH
Confidence            55789999999999998654

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.92  E-value=4e-23  Score=205.84  Aligned_cols=286  Identities=14%  Similarity=0.095  Sum_probs=188.2

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      ..|+.+...+|+++|++.+....++|++|+|++|++..++++ .  .+ ++|++.+|+|..+...+...           
T Consensus        35 ~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~-~--~~-~~vv~~~P~y~~y~~~~~~~-----------   99 (332)
T PRK06425         35 SIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY-I--NV-GNIIIVEPNFNEYKGYAFTH-----------   99 (332)
T ss_pred             ccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-h--CC-CcEEEeCCChHHHHHHHHHc-----------
Confidence            457778889999999999988888999999999999998863 2  23 46888899998776665444           


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                        |...+.+|..   .++.|    .+.    ++.   .++++|++...||++|.+. +.+.+++|.++|++||+++|+||
T Consensus       100 --G~~v~~vp~~---~~~~~----~~~----l~~---~~~k~v~l~nP~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE  162 (332)
T PRK06425        100 --GIRISALPFN---LINNN----PEI----LNN---YNFDLIFIVSPDNPLGNLI-SRDSLLTISEICRKKGALLFIDE  162 (332)
T ss_pred             --CCeEEEEeCC---cccCc----HHH----Hhh---cCCCEEEEeCCCCCcCCcc-CHHHHHHHHHHHHHcCCEEEEec
Confidence              3333333321   01112    122    221   1444555545567777764 88889999999999999999999


Q ss_pred             cccCccccCC-Ccccc-cccCCCcceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh
Q 011669          296 VQAGFARTGS-HFWGF-EAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (480)
Q Consensus       296 v~tgfgr~G~-~~~~~-~~~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~  372 (480)
                      +|..|...+. ..... +..+...-+-||||.++ +|+|+||+++++++++.+....  ..+..+.+++.+    +....
T Consensus       163 ~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~--~~~~~~~~~~~~----l~~~~  236 (332)
T PRK06425        163 AFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKIT--EPWSVCDPAIDF----IRSID  236 (332)
T ss_pred             chhccccccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHcC--CCCccCHHHHHH----HHHhh
Confidence            9998854331 11111 11122233448999999 9999999999999998877533  234344443222    22112


Q ss_pred             hhHH----HHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc
Q 011669          373 KDKL----QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF  448 (480)
Q Consensus       373 ~~~~----~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  448 (480)
                      .+.+    .+.+++..+++.+.|+    +++......+.|.++|+.+.           ...++.+.|+++||.+.++..
T Consensus       237 ~~~~~~~~~~~~~~~r~~l~~~L~----~~g~~~~~~~~g~f~~~~~~-----------~~~~~~~~l~~~gi~v~~~~~  301 (332)
T PRK06425        237 LDYVAKHSLDIMENERSYLINNLE----AMGFRAAGDPSANFITFMIP-----------DAHDFYSYLLKNGILVRLLDD  301 (332)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH----HCCCEECCCCCceEEEEEcC-----------CHHHHHHHHHHCCeEEEECCC
Confidence            2222    3333344444444443    33322112457888888762           145688889999999999865


Q ss_pred             C----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          449 Y----GNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       449 ~----~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      +    .+++||+   ..+.++++.++++|++++
T Consensus       302 f~~~~~~~iRis---~~~~~~~~~l~~al~~~~  331 (332)
T PRK06425        302 YECLGEQYIRIA---IRRRSFNIKLVNALRNFL  331 (332)
T ss_pred             CCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence            4    3689999   457899999999999876

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.92  E-value=3.3e-23  Score=211.85  Aligned_cols=342  Identities=14%  Similarity=0.104  Sum_probs=207.0

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--ccccc-CChHHHHHHHHHHHhC---CCCCCEEEEeCCHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLY-LNHAIADFAEALASKM---PGNLKVVFFTNSGTEAN  171 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--~~~~~-~~~~~~~l~e~L~~~~---~~~~~~v~f~~sGseA~  171 (480)
                      |..++|+..|....  + ..|.|.+++.+.+.+...  ....| +.....+|++++++.+   ..+.++|++|+|+++++
T Consensus        32 ~~~~i~l~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al  108 (402)
T TIGR03542        32 SADIIRLGIGDTTQ--P-LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDV  108 (402)
T ss_pred             CCCeEEcCCCCCCC--C-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHH
Confidence            56788988876543  2 468899999887775421  11223 3455677777777754   34568899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCe-eEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV-HHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      .....+   ..+++.|++.+|+|.++...+..........   ....+ ..+++|......|..|       ++   +  
T Consensus       109 ~~l~~l---~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~---~~~~~~~~~~v~~~~~~~~~~~-------~~---~--  170 (402)
T TIGR03542       109 FRLQSL---FGSDNTVAVQDPVYPAYVDSNVMAGRAGVLD---DDGRYSKITYLPCTKENNFIPD-------LP---E--  170 (402)
T ss_pred             HHHHHh---cCCCCEEEEeCCCCcchHHHHHHcCCccccc---cccccceEEEeecchhhCCCCC-------cc---c--
Confidence            875432   2367889999999988766554433211000   00000 2222221111112111       11   1  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc---ccc-cCCCcceeeecccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG---FEA-HGVVPDIVTMAKGI  326 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~---~~~-~~~~pDivt~sK~~  326 (480)
                       ..++++|++...+|++|.+ .+.+.+++|.++|++||+++|+||+|..|...+.....   .+. .+....+.+|||.+
T Consensus       171 -~~~~~~i~l~nP~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~  248 (402)
T TIGR03542       171 -EPKIDIIYLCSPNNPTGTV-LTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTA  248 (402)
T ss_pred             -cCCceEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCcccc
Confidence             1245666665667788876 58889999999999999999999999988543311111   111 12233345899999


Q ss_pred             c-cCccccccccCHHHH--------HhhcCCCccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHh
Q 011669          327 G-NGIPLGAVVTTPEIA--------EVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~--------~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l  394 (480)
                      | .|+|+||++++++++        ..+.........+.+.+++.++.+.++.-..+   +..+.+++..+.+.+.|++ 
T Consensus       249 g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-  327 (402)
T TIGR03542       249 GFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA-  327 (402)
T ss_pred             CCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh-
Confidence            8 899999999998876        22211111122246778888777766421111   1122233333334333333 


Q ss_pred             HHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHH
Q 011669          395 KDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADY  468 (480)
Q Consensus       395 ~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~  468 (480)
                         ++ +....+ .|+++|+++...        ....++.+.|+ +.||++.++..|    .+++||+  +..+++++++
T Consensus       328 ---~~-~~~~~~~~~~f~~v~l~~~--------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~~~~~~l~~  393 (402)
T TIGR03542       328 ---AG-FKVYGGEHAPYLWVKTPEG--------ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFS--AFGKRENIVE  393 (402)
T ss_pred             ---cC-ceecCCCceeEEEEECCCC--------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ecCCHHHHHH
Confidence               33 222333 467889987321        11345677766 579999997543    3689999  5568999999


Q ss_pred             HHHHHHHHH
Q 011669          469 LVDVMDYSL  477 (480)
Q Consensus       469 ~l~~l~~~l  477 (480)
                      ++++|.++|
T Consensus       394 ~l~~l~~~~  402 (402)
T TIGR03542       394 ACERIKEAL  402 (402)
T ss_pred             HHHHHHhhC
Confidence            999998753

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.92  E-value=6.9e-23  Score=204.22  Aligned_cols=303  Identities=10%  Similarity=0.038  Sum_probs=199.6

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcC--C
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN--A  193 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~--~  193 (480)
                      .||+|.+|..+.+++.+     +..+...+|.++|+++++.+.+++++++||++||..++.....  +++.|+++.+  -
T Consensus        34 ~~~~~~~~~~~~~~~~~-----g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~--~gd~Vli~~~d~p  106 (346)
T TIGR03576        34 GGFKIDEEDLELLETYV-----GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEP--PGRKVVHYLPEKP  106 (346)
T ss_pred             CChhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCC--CCCEEEECCCCCC
Confidence            57999999999988852     3568889999999999987668999999999999999986543  5677775422  2


Q ss_pred             cccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       194 yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      +|........+.+            ......         ++    +++++.    .  .++++|++++ .++.|.+. +
T Consensus       107 ~~~s~~~~~~l~g------------a~~~~~---------~~----l~~l~~----~--~~~~lIiitg-~s~~G~v~-~  153 (346)
T TIGR03576       107 AHPSIPRSCKLAG------------AEYFES---------DE----LSELKK----I--DGTSLVVITG-STMDLKVV-S  153 (346)
T ss_pred             CchhHHHHHHHcC------------CEEecc---------CC----HHHHhh----C--cCceEEEEEC-CCCCCccc-C
Confidence            4443333332222            111111         12    223321    1  2456777776 36667664 5


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCcc--ccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCcc
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFA--RTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF  351 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfg--r~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~  351 (480)
                      .+.|++|.++|++||+++|+||+|..+.  ..| .. ....++...-+.||||++ +|+++||+++++++++.+......
T Consensus       154 ~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~-~~-~~~~~~~divv~s~SKal-aG~r~G~v~~~~~li~~l~~~~~~  230 (346)
T TIGR03576       154 EEDLKRVIKQAKSKEAIVLVDDASGARVRRLYG-QP-PALDLGADLVVTSTDKLM-DGPRGGLLAGRKELVDKIKSVGEQ  230 (346)
T ss_pred             HHHHHHHHHHHHHcCCEEEEECCccccccccCC-CC-CHHHcCCcEEEeccchhc-cccceEEEEeCHHHHHHHHHhhcC
Confidence            6779999999999999999999997431  112 11 111223222234789955 467999999999999988765544


Q ss_pred             ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHH
Q 011669          352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLY  431 (480)
Q Consensus       352 ~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~  431 (480)
                      ..++.+++.++++.++|+.+..+...+.++++.+.+.+.++.    +..   .+..+.|+++++...      +  ..+.
T Consensus       231 ~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~----~~~---~~~~~~f~~~~~~~~------~--~~~~  295 (346)
T TIGR03576       231 FGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK----LNV---ERTPTGFVIKGVEEE------K--LIEI  295 (346)
T ss_pred             cccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh----CCC---CcCCCeEEEEeCCCC------C--HHHH
Confidence            455578889999999998654444555555555555555543    221   122344666665211      0  1245


Q ss_pred             HHHHHHHcCceeeccCcC---CCEEEEeCCCCCCHH---HHHHHHHHHHHHHh
Q 011669          432 IMDKMKEMGVLVGKGGFY---GNVFRITPPLCFTKE---DADYLVDVMDYSLS  478 (480)
Q Consensus       432 ~~~~l~~~Gv~v~~~~~~---~~~iRi~p~~~~t~~---~id~~l~~l~~~l~  478 (480)
                      +.+.|.++||++.++..+   .+++||+  +...++   +++.++++|++.++
T Consensus       296 ~~~ll~~~gV~v~~~~~f~~~~~~vRis--~~~~~~~~~~~~~~~~al~~~~~  346 (346)
T TIGR03576       296 GLDLLRNYGIITITAVGMPGASKTLRFD--LAAKDAERIGDDYLVEAVKDSLK  346 (346)
T ss_pred             HHHHHHhCCEEEeCCcccCCCCCeEEEE--EecChHHhcCHHHHHHHHHhccC
Confidence            567778899999997543   5799999  444444   79999999998763

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.92  E-value=3.8e-22  Score=201.99  Aligned_cols=318  Identities=19%  Similarity=0.156  Sum_probs=204.7

Q ss_pred             CCCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc--CCceEEEE
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--GCNDIISL  190 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~--~~~~ii~~  190 (480)
                      |.+|++++++.+++....+....++  .....+++++|++.++.+.+.++|++||+|||..+++.++...  ++++|++.
T Consensus        31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~  110 (371)
T PRK13520         31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVP  110 (371)
T ss_pred             CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEec
Confidence            7899999999998876422222232  2334689999999987655568899999999999999887642  45678888


Q ss_pred             cCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcce
Q 011669          191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (480)
Q Consensus       191 ~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  270 (480)
                      ++++..+...+ ..            .|+....+|....+  ..|    .+++++.++.    ++++|++-..++++|.+
T Consensus       111 ~~~h~s~~~~~-~~------------~g~~~~~v~~~~~~--~~d----~~~l~~~i~~----~~~~vi~~~~~~~tG~~  167 (371)
T PRK13520        111 ESAHFSFDKAA-DM------------LGVELRRAPLDDDY--RVD----VKAVEDLIDD----NTIGIVGIAGTTELGQV  167 (371)
T ss_pred             CcchHHHHHHH-HH------------cCceEEEecCCCCC--cCC----HHHHHHHHhh----CCEEEEEEcCCcCCccc
Confidence            77765432221 11            12222222221111  123    6788888863    34445544445678888


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEcccccCccc--cCC-CcccccccCCCcceeee--ccccccCcccccccc-CHHHHHh
Q 011669          271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGS-HFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVT-TPEIAEV  344 (480)
Q Consensus       271 ~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr--~G~-~~~~~~~~~~~pDivt~--sK~~g~G~pig~v~~-~~~~~~~  344 (480)
                      .+    +++|.++|++||+++|+||+|+++..  ... ..+.+...  ..|.+++  .|...+|+|+|+++. ++++++.
T Consensus       168 ~~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~  241 (371)
T PRK13520        168 DP----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAPIPAGGILFRDESYLDA  241 (371)
T ss_pred             CC----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCccCCceEEEEcCHHHHHh
Confidence            76    99999999999999999999986531  110 11212112  3465554  365446789997775 5567666


Q ss_pred             hcCCC-c---------cccCCCcHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeE
Q 011669          345 LTRRN-Y---------FNTFGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (480)
Q Consensus       345 l~~~~-~---------~~t~~~~~~~~aaa~a~L~~i~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  411 (480)
                      +.... .         .+|.  ++..++++.++|+.+.+++   ..++..++.+++++.|+++  .+..  .......++
T Consensus       242 l~~~~~~~~~~~~~~~~gt~--~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~--~~~~~~~~v  315 (371)
T PRK13520        242 LAVDTPYLTSKKQATLTGTR--SGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER--GFEP--VIEPVLNIV  315 (371)
T ss_pred             hcccCccccCCCCcceEeec--cChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC--CCEE--ecCCCceEE
Confidence            54211 0         1122  3345777778888765543   5667777777777777664  2221  122334455


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+.+.           ...++.+.|.++||.+..+. ..+++||+++..+|++||+.+++.|++++++
T Consensus       316 ~~~~~-----------~~~~v~~~L~~~gi~v~~~~-~~~~iRis~~~~~t~edi~~~~~~l~~~~~~  371 (371)
T PRK13520        316 AFDDP-----------NPDEVREKLRERGWRVSVTR-CPEALRIVCMPHVTREHIENFLEDLKEVKKR  371 (371)
T ss_pred             EEecC-----------CHHHHHHHHHHCCceeccCC-CCCEEEEEEECCCCHHHHHHHHHHHHHHhhC
Confidence            55542           14578888999999998754 2468999887789999999999999998763

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.92  E-value=1.9e-22  Score=191.31  Aligned_cols=349  Identities=17%  Similarity=0.135  Sum_probs=215.6

Q ss_pred             CEEEeccCCcccccCC--CCCHHHHHHHHHHHHhcc---ccccccCChHHHHHHHHHHHhCCC--CCCEEEEeCCHHHHH
Q 011669           99 RRYLDAFGGIATVCCG--HCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEAN  171 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lG--h~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~l~e~L~~~~~~--~~~~v~f~~sGseA~  171 (480)
                      +.+|-+..|.+++ +|  -..+++.+|+.+.+...-   +....+......+.+|.|.+.++.  ..+.|++|++.++|+
T Consensus        61 k~iipl~~GDPsv-~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAI  139 (447)
T KOG0259|consen   61 KPILPLGHGDPSV-YPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAI  139 (447)
T ss_pred             ceeccCCCCCCCc-cccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHH
Confidence            4677666665554 11  134688889988886531   122222333444555555444443  246899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      |.++....  .++..|+..+++|.-+..-+...             +.+.-.+..-....|..|    ++.+|.+++.  
T Consensus       140 e~~i~~LA--~p~aNILlPrPGfp~Y~~~a~~~-------------~lEVR~ydlLPe~~weID----L~~veal~DE--  198 (447)
T KOG0259|consen  140 ELAISSLA--NPGANILLPRPGFPLYDTRAIYS-------------GLEVRYYDLLPEKDWEID----LDGVEALADE--  198 (447)
T ss_pred             HHHHHHhc--CCCCceecCCCCCchHHHhhhhc-------------CceeEeecccCcccceec----hHHHHHhhcc--
Confidence            99998643  37889999999995333222211             222222221222344445    7788888863  


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-CCCccee--eeccccc-
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIV--TMAKGIG-  327 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-~~~pDiv--t~sK~~g-  327 (480)
                       +.+|.||++|.|+.|++  ++.+-|++|.++|+|+|+++|+||||..+.+.+.++.....+ .+.|-+.  .+||.+= 
T Consensus       199 -NT~AivviNP~NPcGnV--ys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~V  275 (447)
T KOG0259|consen  199 -NTVAIVVINPNNPCGNV--YSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIV  275 (447)
T ss_pred             -CeeEEEEeCCCCCCccc--ccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeeccccccccc
Confidence             46677777787776643  599999999999999999999999998876666444333333 3455444  4789887 


Q ss_pred             cCccccccccCHH--------HHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          328 NGIPLGAVVTTPE--------IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       328 ~G~pig~v~~~~~--------~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      .|||+||++..+.        +.+.+... ..-+-+.+.+-|+|.-.-|+.- .+++.+.....-+...+..-+..+..|
T Consensus       276 PGWRlGWi~~hD~~gvf~~~~~~q~~~~~-~~~~~~p~TiiQ~AlP~IL~kT-p~efF~k~~~~lk~na~l~y~~Lk~IP  353 (447)
T KOG0259|consen  276 PGWRLGWIALHDPRGVFRDTKVVQGIKNF-LDIIPGPATIIQGALPDILEKT-PEEFFDKKLSFLKSNADLCYSRLKDIP  353 (447)
T ss_pred             CCceeeeEEEecccccccchHHHHHHHHH-HhccCCccHhHHHHhHHHHHhC-hHHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence            7999999987432        22222211 1133445566666665555532 234444433333333333333334446


Q ss_pred             cee-eEeccceeE-EEEEecCCCcCCCCHH-HHHHHHHHHHHcCceeeccCcCC--CEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          400 IIG-DVRGRGFLL-GVEFVTDRQLKTPAKA-ETLYIMDKMKEMGVLVGKGGFYG--NVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       400 ~~~-~v~g~g~~~-~i~~~~~~~~~~~~~~-~~~~~~~~l~~~Gv~v~~~~~~~--~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      .+. .+++.|.|+ ++.+...   ..++-. +.+...+..+|+.+++.||..++  +++|++  +....+.++++++||+
T Consensus       354 ~l~cp~kPeg~mylmv~l~~s---~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~leea~~Rik  428 (447)
T KOG0259|consen  354 CLTCPVKPEGCMYLMVKLNLS---LFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEEMLEEAFSRIK  428 (447)
T ss_pred             CcccCcCCCcceEEEeccchh---hhccccccHHHHHHHhhhcceEEeccccccCCCeEEEE--EccChHHHHHHHHHHH
Confidence            665 677777765 4443211   112212 23334445568899999986654  899999  7889999999999999


Q ss_pred             HHHhh
Q 011669          475 YSLSK  479 (480)
Q Consensus       475 ~~l~~  479 (480)
                      ++..+
T Consensus       429 ~Fc~R  433 (447)
T KOG0259|consen  429 EFCDR  433 (447)
T ss_pred             HHHHh
Confidence            88653

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.91  E-value=7.6e-23  Score=204.12  Aligned_cols=308  Identities=14%  Similarity=0.048  Sum_probs=201.9

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~  177 (480)
                      ..++||.++.  +++|...+.+..   ..+       ..|+.+. .+|+++|+++++.. .++|+++||++|++.....+
T Consensus        24 ~~~i~ls~Ne--np~~~~~~~~~~---~~~-------~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~~   90 (339)
T PRK06959         24 DAWLDLSTGI--NPHGYPVPPVPA---DAW-------RRLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPAL   90 (339)
T ss_pred             hhhceeccCC--CCCCCCCCCCCH---HHH-------HhCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHHh
Confidence            4679999887  556755333321   112       2366665 89999999999765 47899999999999865432


Q ss_pred             HHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (480)
Q Consensus       178 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~  257 (480)
                         ..+ ++|++.+++|.++...+...             |...++++.        |.    +.+.+       ....+
T Consensus        91 ---~~~-g~v~v~~P~y~~y~~~~~~~-------------g~~~~~v~~--------~~----~~~~~-------~~~~v  134 (339)
T PRK06959         91 ---LPR-GRVGIAPLAYSEYAPAFARH-------------GHRVVPLDE--------AA----DTLPA-------ALTHL  134 (339)
T ss_pred             ---cCC-CeEEEcCCCcHHHHHHHHHC-------------CCEEEeecc--------cc----hhccc-------cCCEE
Confidence               223 35888999998766555433             233333321        10    11111       11256


Q ss_pred             EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCccccccc
Q 011669          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVV  336 (480)
Q Consensus       258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v~  336 (480)
                      ++++|. |++|.+. +.+.++++.+.|+++++++|+||+|..|.... ........+...-+-||||.+| +|+|+||++
T Consensus       135 ~l~nPn-NPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~-s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v  211 (339)
T PRK06959        135 IVVNPN-NPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTLPAA-SLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVL  211 (339)
T ss_pred             EEeCCC-CCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCCCcc-cchhccCCCCEEEEecChhhcCCcchheEEEe
Confidence            778884 6677664 77778888888999999999999999874322 2221211111122348999999 899999999


Q ss_pred             cCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEe
Q 011669          337 TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV  416 (480)
Q Consensus       337 ~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~  416 (480)
                      +++++++.+....  ..++.|.+++.++.++|+   +.++.++.++.....++.+.+..+++++.  +...++++|+.+.
T Consensus       212 ~~~~li~~l~~~~--~~~~vs~~~q~a~~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g~~--~~~~~~f~~~~~~  284 (339)
T PRK06959        212 AAPALLAALRDAL--GAWTVSGPARHAVRAAFA---DAAWQAAMRERLAADGARLAALLRAHGFA--VHATPLFSWTDDP  284 (339)
T ss_pred             cCHHHHHHHHHhc--CCCCCcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHCCCC--ccCcceEEEEeCC
Confidence            9999998887643  356678889999888885   23344444333333344444433333321  2234677777652


Q ss_pred             cCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          417 TDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                                 ....+.+.|.++||+++..+. .+++||+  +..++++++.++++|+++++.
T Consensus       285 -----------~~~~l~~~l~~~GI~vr~~~~-~~~lRis--i~~~~~e~~~l~~al~~~~~~  333 (339)
T PRK06959        285 -----------RAAALHAALARRGIWTRYFAP-PPSVRFG--LPADEAEWQRLEDALAECVPT  333 (339)
T ss_pred             -----------CHHHHHHHHHhCCeEEEECCC-CCeEEEE--CCCCHHHHHHHHHHHHHHHHH
Confidence                       135688899999999986543 3689999  446889999999999987753

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.91  E-value=1.2e-22  Score=211.56  Aligned_cols=297  Identities=14%  Similarity=0.107  Sum_probs=184.0

Q ss_pred             CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCC
Q 011669          156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD  235 (480)
Q Consensus       156 ~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d  235 (480)
                      .+.++|++|+|+++|++.++.....  +++.|++.+|+|.+.........            |+..+++|......|+.|
T Consensus       117 v~pe~Ivit~Ga~~al~~l~~~l~~--pGD~Vlv~~P~Y~~~~~~~~~~~------------G~~vv~v~~~~~~~~~~~  182 (496)
T PLN02376        117 FDPERVVMSGGATGANETIMFCLAD--PGDVFLIPSPYYAAFDRDLRWRT------------GVEIIPVPCSSSDNFKLT  182 (496)
T ss_pred             CChhhEEEccchHHHHHHHHHHhCC--CCCEEEECCCCccchHHHHHhhC------------CCEEEEEeCCCCccCcCC
Confidence            4567899999999999999986643  67899999999988664332111            344444433222233334


Q ss_pred             hHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc-c
Q 011669          236 GEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE-A  312 (480)
Q Consensus       236 ~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~-~  312 (480)
                          .+.+++.++..  ...++++|++...+|++|.+ .+++.+++|.++|++||+++|+||+|..+.+.+..+..+. .
T Consensus       183 ----~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~-~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l  257 (496)
T PLN02376        183 ----VDAADWAYKKAQESNKKVKGLILTNPSNPLGTM-LDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEV  257 (496)
T ss_pred             ----HHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHh
Confidence                34454433211  12356766666667778876 4889999999999999999999999998765552222211 1


Q ss_pred             ---cC---CCcc----eeeeccccc-cCccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHH-HHH
Q 011669          313 ---HG---VVPD----IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKL-QNN  379 (480)
Q Consensus       313 ---~~---~~pD----ivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~-~~~  379 (480)
                         .+   ..++    +.+|||.+| .|+|+||++++ +.+.+.+....  .....+.+.+.++.+.|+   +..+ .++
T Consensus       258 ~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~--~~~~vs~~~Q~a~~~~L~---d~~~~~~~  332 (496)
T PLN02376        258 VNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS--SFGLVSSQTQLMLASMLS---DDQFVDNF  332 (496)
T ss_pred             hccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHh--hcCCCCHHHHHHHHHHhC---ChhHHHHH
Confidence               01   1223    237999998 89999999985 55655543322  122356777777777664   3333 223


Q ss_pred             HHHHHHHH---HHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CC
Q 011669          380 AHVVGSYL---KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GN  451 (480)
Q Consensus       380 ~~~~~~~l---~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~  451 (480)
                      ++++.+++   ++.+.+..+++++.......|+++|+++...... ........++++.+.+ .||.+.||..|    .+
T Consensus       333 l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~-~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g  411 (496)
T PLN02376        333 LMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRD-RNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPG  411 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhcc-CCchhHHHHHHHHHHHcCCEEEeCccccCCCCCC
Confidence            33333333   2333333333332222234568999998432110 0111123457777765 59999998655    36


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          452 VFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       452 ~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ++||+.. ..+++++++++++|.+++.
T Consensus       412 ~~Ri~fa-~~~~~~l~~al~rl~~~l~  437 (496)
T PLN02376        412 WFRICFA-NMDDDTLHVALGRIQDFVS  437 (496)
T ss_pred             EEEEEee-CCCHHHHHHHHHHHHHHHH
Confidence            8999954 2578999999999999875

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.91  E-value=1.7e-22  Score=206.09  Aligned_cols=336  Identities=15%  Similarity=0.130  Sum_probs=211.7

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhC------CCCCCEEEEeCCHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM------PGNLKVVFFTNSGTEA  170 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~------~~~~~~v~f~~sGseA  170 (480)
                      +...+||..|.+..   ..++.+.+++.+.+.........| ......++++.+++++      +.+.++|++++|++++
T Consensus        32 ~~~~~~l~~g~p~~---~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~a  108 (394)
T PRK06836         32 ADNVFDFSLGNPSV---PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGA  108 (394)
T ss_pred             CCCeEEecCcCCCC---CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHH
Confidence            34678998876543   356889998887665421111223 2334455555555543      2356789999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +..+++...  .+++.|++.+++|.++.......             |+....+|.... .|+.|    .++++++++  
T Consensus       109 l~~~~~~l~--~~gd~Vli~~p~~~~~~~~~~~~-------------g~~v~~v~~~~~-~~~~d----~~~l~~~~~--  166 (394)
T PRK06836        109 LNVALKAIL--NPGDEVIVFAPYFVEYRFYVDNH-------------GGKLVVVPTDTD-TFQPD----LDALEAAIT--  166 (394)
T ss_pred             HHHHHHHhc--CCCCEEEEcCCCCccHHHHHHHc-------------CCEEEEEecCCc-cCcCC----HHHHHhhcC--
Confidence            999887653  36678999999987754432211             333333322111 12223    567777774  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH------hCCEEEEcccccCccccCCCccc-ccccCCCcceeeec
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK------AGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTMA  323 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~------~gillI~DEv~tgfgr~G~~~~~-~~~~~~~pDivt~s  323 (480)
                        +++++|++...++++|.+. +.+.+++|.++|++      ||+++|+||+|.+|...+..... ....+...-+-+||
T Consensus       167 --~~~~~v~~~~p~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~S  243 (394)
T PRK06836        167 --PKTKAVIINSPNNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFS  243 (394)
T ss_pred             --cCceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecch
Confidence              2567777777788888765 78889999999999      89999999999988544411111 11122222233799


Q ss_pred             cccc-cCccccccccCHHHHHh------hcCCCc-cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Q 011669          324 KGIG-NGIPLGAVVTTPEIAEV------LTRRNY-FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK  395 (480)
Q Consensus       324 K~~g-~G~pig~v~~~~~~~~~------l~~~~~-~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~  395 (480)
                      |.++ .|+|+||+++++++.+.      +..... ...++.+++.+.++...++   +....+..++..+.+.+.|++  
T Consensus       244 K~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~r~~l~~~L~~--  318 (394)
T PRK06836        244 KSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLD---ATVDVSIYKRNRDLLYDGLTE--  318 (394)
T ss_pred             hhccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHh--
Confidence            9999 89999999999876432      111111 1224566777777766654   222233344444555554443  


Q ss_pred             HhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          396 DKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       396 ~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                        ++........|+++|+.+...         ...++++.|.++||.+.++..+  .+++||+..  .+++++++++++|
T Consensus       319 --~g~~~~~~~gg~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~l  385 (394)
T PRK06836        319 --LGFECVKPQGAFYLFPKSPEE---------DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPAF  385 (394)
T ss_pred             --CCCEeecCCceEEEEEeCCCC---------CHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHHH
Confidence              332222233467777765221         1345678888999999998544  378999964  6899999999999


Q ss_pred             HHHHhh
Q 011669          474 DYSLSK  479 (480)
Q Consensus       474 ~~~l~~  479 (480)
                      ++++++
T Consensus       386 ~~~l~~  391 (394)
T PRK06836        386 EKLAKE  391 (394)
T ss_pred             HHHHHH
Confidence            998864

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.91  E-value=9.5e-22  Score=200.98  Aligned_cols=333  Identities=17%  Similarity=0.138  Sum_probs=214.4

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc-------CChHHHHHHHHHHHhCCCC-CCEEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-------LNHAIADFAEALASKMPGN-LKVVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~-------~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGse  169 (480)
                      +..|||..+.      |..++.|.+++.+.+..........       ......++++.++++++.. .++|+|++|+|+
T Consensus        16 ~~iyld~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~   89 (398)
T TIGR03392        16 GTVYLDSAAT------ALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE   89 (398)
T ss_pred             CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence            5689996543      3456899999988775431111111       1234577899999999863 678999999999


Q ss_pred             HHHHHHHHHHh--hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          170 ANELAIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       170 A~~~Alk~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++..++.....  ..++++||+.++.|++.........         ...|+..+.+|....  +..|    .+++++++
T Consensus        90 ~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~---------~~~g~~v~~v~~~~~--~~~~----~~~l~~~i  154 (398)
T TIGR03392        90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVA---------QQTGAKVVKLPIGAD--LLPD----IRQLPELL  154 (398)
T ss_pred             HHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHH---------HHcCcEEEEEecCCC--CCcC----HHHHHHHh
Confidence            99999886521  2356789999988876322111110         011333333332111  1112    56777777


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cc
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KG  325 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~  325 (480)
                      +    +++++|++..+++++|.+.+    +++|.++|++||+++|+|++|. +|..-     .+.....+|+.++|  |.
T Consensus       155 ~----~~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~~-----~~~~~~~~d~~~~s~~K~  220 (398)
T TIGR03392       155 T----PRTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHGP-----PDVQALDIDFYAFSGHKL  220 (398)
T ss_pred             c----cCceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCCC-----CChhhcCCCEEEEecccc
Confidence            4    35778888888889999877    9999999999999999999996 33221     22223457888888  97


Q ss_pred             cccCccccccccCHHHHHhhcCCCccc------------------cC---CCcHHHHHHHHHHHHHhhhh---HHHHHHH
Q 011669          326 IGNGIPLGAVVTTPEIAEVLTRRNYFN------------------TF---GGNPVCTAAGHAVLKVIQKD---KLQNNAH  381 (480)
Q Consensus       326 ~g~G~pig~v~~~~~~~~~l~~~~~~~------------------t~---~~~~~~~aaa~a~L~~i~~~---~~~~~~~  381 (480)
                      +|. .++|++++++++++.+.....+.                  -|   ..|..+.++..++++.+.+.   +..++.+
T Consensus       221 ~gp-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~  299 (398)
T TIGR03392       221 YGP-TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSV  299 (398)
T ss_pred             cCC-CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            663 24899999999887765321110                  01   23344666777777776543   3445555


Q ss_pred             HHHHHHHHHHHHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc----------CC
Q 011669          382 VVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF----------YG  450 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~  450 (480)
                      ++.+++++.|.++    +.+... .....++.+.+..         .....+.+.|.++||.+.++..          ..
T Consensus       300 ~l~~~l~~~l~~l----~g~~~~~~~~~~i~~~~~~~---------~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~  366 (398)
T TIGR03392       300 SLADLAEERLAQL----PGFRSFRCPGSSLLAFDFAG---------VHHSDLAALLAESGIALRAGQHCAQPLMAALGVS  366 (398)
T ss_pred             HHHHHHHHHHhcC----CCeEEeCCCCCcEEEEEeCC---------cCHHHHHHHHHhCCEEEecCccchHHHHHHhCCC
Confidence            5555555555443    322211 1223455555421         1135677888999999987642          13


Q ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          451 NVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       451 ~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++|+++...+|++|++.++++|++++++
T Consensus       367 ~~iRvS~~~~~t~~ei~~l~~~l~~~~~~  395 (398)
T TIGR03392       367 GTLRASFAPYNTQQDVDALVDAVGAALEL  395 (398)
T ss_pred             CEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999998765

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.91  E-value=8.5e-23  Score=199.03  Aligned_cols=334  Identities=16%  Similarity=0.165  Sum_probs=219.0

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhc-ccccc-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~-~~~~~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~  173 (480)
                      -|+|..+...      -+|+|+++|...+... +..++     .-.....++.++++++.++.+.++|+||++|||+|++
T Consensus         3 iYlD~~ATTp------~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNl   76 (386)
T COG1104           3 IYLDNAATTP------VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNL   76 (386)
T ss_pred             ccccccccCC------CCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHH
Confidence            5899877654      3599999999988775 22111     1224566788999999999888999999999999999


Q ss_pred             HHHHHH-hh--cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          174 AIMMAR-LY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       174 Alk~ar-~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      ||+-+. .+  .++.+-|+....-|-....++.-...         .|+.....|...      ++.-.+++|+++|.  
T Consensus        77 aI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~---------~g~~Vtyl~V~~------~G~v~~e~L~~al~--  139 (386)
T COG1104          77 AIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLER---------QGFEVTYLPVDS------NGLVDLEQLEEALR--  139 (386)
T ss_pred             HHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHh---------cCCeEEEeCCCC------CCeEcHHHHHHhcC--
Confidence            999642 22  12344555566666655544432211         133332222211      22222688888885  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeecccc-ccC
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNG  329 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~-g~G  329 (480)
                        +++..|.+..+||+.|.++|    +++|.++|+++|++|++|.||. +|+..     .+......|+++||-.- +|.
T Consensus       140 --~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip-----i~~~~~~vD~ls~SaHK~~Gp  207 (386)
T COG1104         140 --PDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP-----IDLEELGVDLLSFSAHKFGGP  207 (386)
T ss_pred             --CCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee-----ccccccCcceEEeehhhccCC
Confidence              47999999999999999999    9999999999999999999997 77653     34444458999998433 333


Q ss_pred             ccccccccCHHHHHhhcCCCccccC-------CCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTF-------GGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~-------~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      -.+|+++.++.+.  +.+..+++.+       .-|..+.++..+++++..+  +....++..++++|.+.|.+.....-+
T Consensus       208 kGiGaLyv~~~~~--~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~  285 (386)
T COG1104         208 KGIGALYVRPGVR--LEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYL  285 (386)
T ss_pred             CceEEEEECCCCc--cCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence            5678888876543  2222222211       1234444444555554433  345566777777777777664211111


Q ss_pred             eee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---------------------CCCEEEEeCC
Q 011669          401 IGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---------------------YGNVFRITPP  458 (480)
Q Consensus       401 ~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~p~  458 (480)
                      .+. .......+.+.|..-         ..+.+...|..+||.+..|..                     ....|||+..
T Consensus       286 ~g~~~~rlP~~~~~~f~gv---------~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g  356 (386)
T COG1104         286 NGDDEPRLPNILNFSFPGV---------EGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLG  356 (386)
T ss_pred             cCCcccCCCCeEEEEeCCC---------cHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcC
Confidence            111 122233444555321         246677777788999987631                     1257999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhh
Q 011669          459 LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ...|++|+|.++++|.+++++
T Consensus       357 ~~tt~eei~~~~~~l~~~i~~  377 (386)
T COG1104         357 RFTTEEEIDAAAEALKEIIKR  377 (386)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999998875

>PLN02721 threonine aldolase

Probab=99.91  E-value=2.8e-22  Score=201.53  Aligned_cols=331  Identities=17%  Similarity=0.154  Sum_probs=205.0

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar  179 (480)
                      +++||.++.++.    .+|.+.+|+.+.  ...+. ..++++...+|+++|+++++.  +.++++++|++++..++....
T Consensus         6 ~~~~~~~~~~~~----~~~~~~~a~~~~--~~~~~-~~~~~~~~~~l~~~la~~~~~--~~~~~~~~Gs~a~~~~l~~~~   76 (353)
T PLN02721          6 RVVDLRSDTVTK----PTDAMRAAMANA--EVDDD-VLGYDPTALRLEEEMAKIFGK--EAALFVPSGTMGNLISVLVHC   76 (353)
T ss_pred             hhhhhhcccccC----CCHHHHHHHHhc--cCCCc-ccCCCHHHHHHHHHHHHHhCC--ceeEEecCccHHHHHHHHHHc
Confidence            578888888762    679999998763  12221 235567789999999999964  457899999999988887653


Q ss_pred             hhcCCceEEEEcCCccccccc--ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC---CCc
Q 011669          180 LYTGCNDIISLRNAYHGNAAG--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT---SGH  254 (480)
Q Consensus       180 ~~~~~~~ii~~~~~yhG~~~~--~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~---~~~  254 (480)
                      . .+++.|++.+++|......  ....            .|+....+|...  .+..|    .+++++.++...   .++
T Consensus        77 ~-~~gd~Vl~~~~~~~~~~~~~~~~~~------------~g~~~~~v~~~~--~~~~d----~~~l~~~i~~~~~~~~~~  137 (353)
T PLN02721         77 D-VRGSEVILGDNSHIHLYENGGISTL------------GGVHPRTVKNNE--DGTMD----LDAIEAAIRPKGDDHFPT  137 (353)
T ss_pred             c-CCCCeEEEcCccceehhcccchhhh------------cCceeEecCCCc--CCCcC----HHHHHHHHHhccCCCCCc
Confidence            2 1567899988886422211  1111            133333333211  12123    577888776321   136


Q ss_pred             eEEEEEcccCCC-CcceeCCCChHHHHHHHHHHhCCEEEEcccccCccc---cCCCcccccccCCCcc--eeeecccccc
Q 011669          255 VAGFLSESIQGV-GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR---TGSHFWGFEAHGVVPD--IVTMAKGIGN  328 (480)
Q Consensus       255 ~a~vi~epi~~~-~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr---~G~~~~~~~~~~~~pD--ivt~sK~~g~  328 (480)
                      +++|++++++++ +|.+ ++.+.+++|.++|++||+++|+||+|. ++-   .+..   ........|  +++++|++++
T Consensus       138 ~~~v~l~~~~~np~G~~-~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~---~~~~~~~~d~~~~s~sK~l~~  212 (353)
T PLN02721        138 TRLICLENTHANCGGRC-LSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVP---VHRLVKAADSVSVCLSKGLGA  212 (353)
T ss_pred             ceEEEEeccccccCCcc-ccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCC---HHHHhhhCCEEEEecccccCC
Confidence            789999886655 5554 588899999999999999999999985 321   1100   110011233  4578999874


Q ss_pred             Cccccc-cccCHHHHHhhcCCCccccCCCc--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee--e
Q 011669          329 GIPLGA-VVTTPEIAEVLTRRNYFNTFGGN--PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG--D  403 (480)
Q Consensus       329 G~pig~-v~~~~~~~~~l~~~~~~~t~~~~--~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~  403 (480)
                        |+|+ +++++++++.+.........+.+  +..+++++.+++...  ...++..++.+++.+.|+++    +.+.  .
T Consensus       213 --~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~~~~~~~  284 (353)
T PLN02721        213 --PVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENV--PKLEDDHKKAKLLAEGLNQI----KGLRVNV  284 (353)
T ss_pred             --ceeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhC----CCcEEec
Confidence              5675 66888887765432211111111  223333444443211  11233344455666655543    2221  1


Q ss_pred             EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       404 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ....+.++++.+....      ......+.+.|.++||.+.+++  .+++|+++++.++++|+++++++|++++..
T Consensus       285 ~~~~~~~~~~~~~~~~------~~~~~~~~~~L~~~gi~v~~~~--~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        285 AAVETNIVYFDITDGS------RITAEKLCKSLEEHGVLLMPGN--SSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             CCccceEEEEEccCCc------cccHHHHHHHHHhCCcEEecCC--CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence            2334567777763210      0124678899999999999875  568999999899999999999999998764

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=3.4e-22  Score=199.52  Aligned_cols=315  Identities=16%  Similarity=0.153  Sum_probs=202.6

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      .|..++||..+...  ++ .+|.+.+++.+.+...  ....|+.....+++++++++++.+.++|++|+|+++++..+++
T Consensus        16 ~~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~--~~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~   90 (337)
T PRK03967         16 EGNYRIWLDKNENP--FD-LPEELKEEIFEELKRV--PFNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVK   90 (337)
T ss_pred             CCCceEEecCCCCC--CC-CCHHHHHHHHHHhhcC--ccccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHH
Confidence            45567888877643  33 4688999998877542  1234565667889999999998777899999999999987766


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      ..    .++.|++.+++|..+..... ..            |+..+.++..  ..|+.|    .+.+++.+.     +++
T Consensus        91 ~~----~gd~V~v~~P~y~~~~~~~~-~~------------g~~~~~v~~~--~~~~~d----~~~l~~~~~-----~~~  142 (337)
T PRK03967         91 LF----EGKHIVITPPTFGMYSFYAK-LN------------GIPVIDVPLK--EDFTID----GERIAEKAK-----NAS  142 (337)
T ss_pred             Hh----CCCeEEEeCCChHHHHHHHH-Hc------------CCeEEEeecC--CCCCcC----HHHHHHhcc-----CCC
Confidence            43    46789999999975443221 11            3333333221  123333    455655432     334


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccCCCcceeeeccccc-cCccccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTMAKGIG-NGIPLGA  334 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~~~pDivt~sK~~g-~G~pig~  334 (480)
                      ++++...+|++|.+.+    .++|.++++ +++++|+||+|.+|.. . .... .+......-+-+|||.++ .|+|+||
T Consensus       143 ~v~~~~P~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~-~-~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~  215 (337)
T PRK03967        143 AVFICSPNNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSG-K-SLIGLIDEYPNLILLRTFSKAFGLAGIRAGY  215 (337)
T ss_pred             EEEEeCCCCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcc-c-chHHHHhhCCCEEEEecchHhhcchhhhhee
Confidence            4444445777887765    577778884 7999999999998742 1 2111 111111223347999999 8999999


Q ss_pred             cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                      +++++++++.+....  ..++.+.+++.++.++|+.  .+.+.+..+... ..++.+.+...++    ...+.|+++|+.
T Consensus       216 iv~~~~~i~~~~~~~--~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~-~~r~~l~~~L~~~----~~~~~~~~~~~~  286 (337)
T PRK03967        216 AIANEEIIDALYRIK--PPFSLNILTMKIVRLALDH--YDLIEERIDYII-KERERVRRELGEY----AYPSDANFLLLK  286 (337)
T ss_pred             eecCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhC--HHHHHHHHHHHH-HHHHHHHHHhccC----cCCCCCcEEEEh
Confidence            999999988876543  3456788899988888862  122222222221 1222232222222    234567788775


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-FYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +               .+.+.|+++||.+.+++ ...+++||+.   .+.++.++++++|+++.+
T Consensus       287 ~---------------~~~~~l~~~gi~v~~~~~~~~~~~Ri~~---~~~~~~~~l~~~l~~~~~  333 (337)
T PRK03967        287 L---------------DAYDYLLENGIVVRKLSGRLEGHIRVTV---GKREENDEFIKALKEIKE  333 (337)
T ss_pred             H---------------HHHHHHHHCCEEEEeCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHH
Confidence            4               16788889999997653 2347899993   367888899999887764

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=1.1e-22  Score=205.11  Aligned_cols=301  Identities=16%  Similarity=0.143  Sum_probs=192.3

Q ss_pred             ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC
Q 011669          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (480)
Q Consensus       137 ~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  216 (480)
                      .|+.+...+|++.|+++++.+.++|++++|++|++..+++.... .+++.|++.+++|-.+...+..             
T Consensus        55 ~Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~-~g~~~vlv~~p~y~~~~~~~~~-------------  120 (364)
T PRK04781         55 RYPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCV-PGRDAVLVTPPVFGMYAVCARL-------------  120 (364)
T ss_pred             cCCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcC-CCCCeEEEcCCChHHHHHHHHH-------------
Confidence            35555568899999999987778999999999999999876532 2336788888877433322111             


Q ss_pred             CCeeEecCCCC-cCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          217 TGVHHALNPDP-YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       217 ~g~~~~~~p~~-~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      .|...+++|.. ....|..|    .+++++.+.   ..++++|++...+|++|.+. +.+.++++.+.|+ +++++|+||
T Consensus       121 ~g~~~~~v~~~~~~~~~~~d----~~~l~~~~~---~~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~De  191 (364)
T PRK04781        121 QNAPLVEVPLVDGADGFHAD----VPAIVAAAL---ASNAKLVFLCSPSNPAGSAI-ALDQIERALQALQ-GKALVVVDE  191 (364)
T ss_pred             cCCEEEEEecCCCccCCCcC----HHHHHHHHh---ccCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeC
Confidence            13333333321 01112222    344433332   23566777767778888876 5666666666664 489999999


Q ss_pred             cccCccccCCCccc-ccccCCCcceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh
Q 011669          296 VQAGFARTGSHFWG-FEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK  373 (480)
Q Consensus       296 v~tgfgr~G~~~~~-~~~~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~  373 (480)
                      +|..|.... .... .+..+...-+-||||.+| .|+|+||+++++++++.+....  ..++.+.+++.++.++|+.-..
T Consensus       192 ay~~f~~~~-~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~  268 (364)
T PRK04781        192 AYGEFSDVP-SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQ--APYPVPTPCAALAEQALSAPAL  268 (364)
T ss_pred             cchhhcCCc-chHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhcc--CCCCCCHHHHHHHHHHHhcccH
Confidence            999885322 1111 122222233448999999 8999999999999998887643  4567788888888877753111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhcCce-eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---
Q 011669          374 DKLQNNAHVVGSYLKERLTALKDKYGII-GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---  449 (480)
Q Consensus       374 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---  449 (480)
                      +...+.++.. ...++.+.+..+.++.+ ...+..|+++|+++..           ..++.+.|.++||++.++..+   
T Consensus       269 ~~~~~~~~~~-~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~-----------~~~~~~~l~~~gI~v~~~~~~~~~  336 (364)
T PRK04781        269 AVTARRVAEV-RAERERLHAALAQLPGVRRVYPSQGNFLLVRFDD-----------AEAAFQALLAAGVVVRDQRAAPRL  336 (364)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC-----------HHHHHHHHHHCCeEEeeCCCCCCC
Confidence            2222222222 22333333333344322 2356679999988721           356788899999999987432   


Q ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          450 GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       450 ~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+++||+   ..+.++++.++++|+++..
T Consensus       337 ~~~~Ris---~~~~~~~~~l~~al~~~~~  362 (364)
T PRK04781        337 SDALRIT---LGTPEQNDRVLAALQRTQA  362 (364)
T ss_pred             CCeEEEe---CCCHHHHHHHHHHHHHHHh
Confidence            4789999   3478999999999988654

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.91  E-value=3.7e-22  Score=207.11  Aligned_cols=313  Identities=16%  Similarity=0.112  Sum_probs=188.6

Q ss_pred             HHHHHHHHHHhC----C----CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          143 IADFAEALASKM----P----GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       143 ~~~l~e~L~~~~----~----~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..+|++.|++++    +    .+.++|++|+|++++++.++.....  +++.|++.+|+|.++........         
T Consensus        88 ~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~--pGd~Vlv~~P~Y~~~~~~~~~~~---------  156 (468)
T PLN02450         88 LPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAE--PGDAFLLPTPYYPGFDRDLKWRT---------  156 (468)
T ss_pred             hHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCC--CCCEEEECCCCCCchHHHHhhcC---------
Confidence            345555555544    2    3567899999999999998886543  67899999999977654332111         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                         |+..+++|......|..|    .+++++.++..  ...+++++++...+|++|.+ .+++.+++|.++|++||+++|
T Consensus       157 ---g~~~v~v~~~~~~~~~~~----~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~-~s~e~l~~ll~~a~~~~~~iI  228 (468)
T PLN02450        157 ---GVEIVPIHCSSSNGFQIT----ESALEEAYQQAQKLNLKVKGVLITNPSNPLGTT-TTRTELNLLVDFITAKNIHLI  228 (468)
T ss_pred             ---CcEEEEEecCCccCCcCC----HHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcc-cCHHHHHHHHHHHHHCCcEEE
Confidence               333344332212233333    35566655431  12256655555556677766 588999999999999999999


Q ss_pred             EcccccCccccCCCcccc-cc-----------cCCCcceeeeccccc-cCccccccccCHH-HHHhhcCCCccccCCCcH
Q 011669          293 ADEVQAGFARTGSHFWGF-EA-----------HGVVPDIVTMAKGIG-NGIPLGAVVTTPE-IAEVLTRRNYFNTFGGNP  358 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~-~~-----------~~~~pDivt~sK~~g-~G~pig~v~~~~~-~~~~l~~~~~~~t~~~~~  358 (480)
                      +||+|.++-+.+..+... ..           .+...-+-+|||.++ +|+|+||++++++ +.+.+.....  ....+.
T Consensus       229 ~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~  306 (468)
T PLN02450        229 SDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS--FGLVSS  306 (468)
T ss_pred             EEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhh--cCCCCH
Confidence            999999875554222111 11           111122448999999 8999999999854 5555443321  123577


Q ss_pred             HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH
Q 011669          359 VCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK  437 (480)
Q Consensus       359 ~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  437 (480)
                      +++.++.+.|+.-.- ..+.+..++.-...++.+.+..+++++.......|+++|+.+.....  ...-.....+++.|+
T Consensus       307 ~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~--~~~~~~~~~l~~~ll  384 (468)
T PLN02450        307 QTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLK--SNTFEAEMELWKKIV  384 (468)
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcC--cCCchHHHHHHHHHH
Confidence            888888777752110 11222222222222333333334444322223457788988743111  011112234555554


Q ss_pred             -HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          438 -EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       438 -~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       +.||.+.||..|    .+++||+... .+++++++++++|++++.+
T Consensus       385 ~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~  430 (468)
T PLN02450        385 YEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVES  430 (468)
T ss_pred             HhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHh
Confidence             579999998654    3689999442 4789999999999998764

>PRK07908 hypothetical protein; Provisional

Probab=99.91  E-value=7.2e-22  Score=198.27  Aligned_cols=314  Identities=13%  Similarity=0.124  Sum_probs=202.0

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      +..++||..|....   ..++.+.+++.+.+...    ..|+. ....++++.++++++.+.++|++|+|++||+..+++
T Consensus        21 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~----~~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~   93 (349)
T PRK07908         21 GPGLLDFAVNVRHD---TPPEWLRERLAARLGDL----AAYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR   93 (349)
T ss_pred             CCCeEEecCCCCCC---CCCHHHHHHHHHHhhHh----hcCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh
Confidence            57899998876542   25788999999887653    22443 467789999999998778899999999999998887


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                       .   .+ +++++..++|.+.......             .|+..+.+|...  .|+.|    .+.    ++    ++++
T Consensus        94 -l---~~-~~viv~~P~y~~~~~~~~~-------------~G~~i~~v~~~~--~~~~d----~~~----l~----~~~~  141 (349)
T PRK07908         94 -L---RP-RRAAVVHPSFTEPEAALRA-------------AGIPVHRVVLDP--PFRLD----PAA----VP----DDAD  141 (349)
T ss_pred             -c---CC-CeEEEeCCCChHHHHHHHH-------------cCCEEEeeccCc--ccCcC----hhH----hc----cCCC
Confidence             2   23 5677788998655432211             134444333221  13222    222    22    2455


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcce---eeeccccc-cCccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI---VTMAKGIG-NGIPL  332 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDi---vt~sK~~g-~G~pi  332 (480)
                      ++++-..+|++|.+.+    .++|.++|++ ++++|+||+|..|. .+ ........+ .+++   -+|||.++ .|+|+
T Consensus       142 ~i~l~np~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~~-~~-~~~~l~~~~-~~~~i~i~S~SK~~~l~GlRi  213 (349)
T PRK07908        142 LVVIGNPTNPTSVLHP----AEQLLALRRP-GRILVVDEAFADAV-PG-EPESLAGDD-LPGVLVLRSLTKTWSLAGLRV  213 (349)
T ss_pred             EEEEcCCCCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhhc-cC-Ccccccccc-CCCEEEEeecccccCCcccee
Confidence            6666555677888775    5678888864 78899999998763 23 221221111 1233   37899999 89999


Q ss_pred             cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccce
Q 011669          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF  409 (480)
Q Consensus       333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  409 (480)
                      ||+++++++++.+.....  .+..+++.++++.+.++....   ++..+++++..+++.+.|++    +++.......|+
T Consensus       214 G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~p~~g~  287 (349)
T PRK07908        214 GYALGAPDVLARLTRGRA--HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA----VGARVVDPAAAP  287 (349)
T ss_pred             eeeecCHHHHHHHHhcCC--CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh----CCcEeccCCCce
Confidence            999999999888765432  245556666655554431000   12233333334444444433    332222225688


Q ss_pred             eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ++|+.+..           ...+.+.|+++||.+.++..+    .+++||+.   .+++++++++++|++++.
T Consensus       288 ~~~~~~~~-----------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        288 FVLVRVPD-----------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILK  346 (349)
T ss_pred             EEEEECCc-----------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHh
Confidence            88887631           356778889999999987543    47999994   478899999999998765

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.91  E-value=2.1e-22  Score=206.98  Aligned_cols=344  Identities=14%  Similarity=0.069  Sum_probs=203.7

Q ss_pred             EEEeccCCcccccCCCCC--HHHHHHHHHHHHhccc--cccccCC-hHHHHHHHHHHHhC------CCCCCEEEEeCCHH
Q 011669          100 RYLDAFGGIATVCCGHCH--PYVVDSIVNQIKRIQH--STVLYLN-HAIADFAEALASKM------PGNLKVVFFTNSGT  168 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~--p~v~~A~~~~~~~~~~--~~~~~~~-~~~~~l~e~L~~~~------~~~~~~v~f~~sGs  168 (480)
                      ..|||..|.+..   ...  +.+.+++.+.+.....  ....|.. ....+|++.|++++      +.+.++|++|+|++
T Consensus        31 ~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~  107 (416)
T PRK09440         31 GAIMLGGGNPAH---IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQ  107 (416)
T ss_pred             CceeccCCCCCc---cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChH
Confidence            458888776542   122  3566666665543110  0012332 22344555555543      34567899999999


Q ss_pred             HHHHHHHHHHHhh---cCCceEEE-EcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHH
Q 011669          169 EANELAIMMARLY---TGCNDIIS-LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ  244 (480)
Q Consensus       169 eA~~~Alk~ar~~---~~~~~ii~-~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le  244 (480)
                      +|+..++++....   ..++.|++ .+++|.++...+........       .+...++.+.. ...|+.|    .+.++
T Consensus       108 ~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~d----~~~l~  175 (416)
T PRK09440        108 SAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVS-------YRPNIELLPEG-QFKYHVD----FEHLH  175 (416)
T ss_pred             HHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceee-------ccccccccccc-ccccCCC----HHHcc
Confidence            9999998865432   13567888 69999987654332110000       01111111110 0012223    34454


Q ss_pred             HHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc--ccCCCcceeee
Q 011669          245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE--AHGVVPDIVTM  322 (480)
Q Consensus       245 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~--~~~~~pDivt~  322 (480)
                        +    ..+++++++.+.+|++|.+. +.+.+++|.++|++||+++|+||+|..+-... .+....  ..+...-+.+|
T Consensus       176 --~----~~~~~~i~l~~P~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~~~~~~vI~~~Sf  247 (416)
T PRK09440        176 --I----DEDTGAICVSRPTNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGPPFPGI-IFSEATPLWNPNIILCMSL  247 (416)
T ss_pred             --c----CCCceEEEEecCCCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCccccCCCc-chhhcCccccCCeEEEecc
Confidence              1    12455666655577888774 88899999999999999999999996431110 010110  01222334589


Q ss_pred             ccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHH--------HHHHHHHHHHHHHh
Q 011669          323 AKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA--------HVVGSYLKERLTAL  394 (480)
Q Consensus       323 sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~--------~~~~~~l~~~L~~l  394 (480)
                      ||....|+|+||+++++++++.+........++.+.+.+.++.++|+.   ..+.++.        +++.+.+++.|.+.
T Consensus       248 SK~~~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~r~~~~~~~L~~~  324 (416)
T PRK09440        248 SKLGLPGVRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIES---GDLLRLSETVIRPFYRQKVQLAIALLRRY  324 (416)
T ss_pred             cccCCCcceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            997447999999999999998887654444566788888888888752   2232222        22333333333332


Q ss_pred             HHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----------CCEEEEeCCCCCC
Q 011669          395 KDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----------GNVFRITPPLCFT  462 (480)
Q Consensus       395 ~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----------~~~iRi~p~~~~t  462 (480)
                      ....+ +....+ .|+++|+++....       .....+.+.|.++||.+.++..|           .+++||+..  .+
T Consensus       325 l~~~~-~~~~~p~gg~fiw~~~~~~~-------~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~  394 (416)
T PRK09440        325 LPDEP-CLIHKPEGAIFLWLWFKDLP-------ITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QD  394 (416)
T ss_pred             cccCC-eEEecCCCceEEEEECCCCC-------CCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CC
Confidence            21111 222344 4788898874311       11356777888999999997543           148999944  58


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011669          463 KEDADYLVDVMDYSLSK  479 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~~  479 (480)
                      ++++++++++|.+++++
T Consensus       395 ~~~l~~~i~~l~~~~~~  411 (416)
T PRK09440        395 DEEIEKGIAILAEEVEK  411 (416)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998764

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.91  E-value=2.8e-21  Score=197.67  Aligned_cols=333  Identities=17%  Similarity=0.130  Sum_probs=214.8

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-------ccCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-------LYLNHAIADFAEALASKMPG-NLKVVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-------~~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGse  169 (480)
                      +..|||-.+.      |-.++.|.+++.+.+........       ....+...+++++++++++. +.++|+|++|+|+
T Consensus        19 ~~~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~   92 (401)
T PRK10874         19 AGVYLDSAAT------ALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTE   92 (401)
T ss_pred             ceEEEeCCcc------cCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHH
Confidence            4679996543      34568999999887765321111       11134567899999999987 6789999999999


Q ss_pred             HHHHHHHHHHh--hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          170 ANELAIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       170 A~~~Alk~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++..+++....  ..++++||+.++.|++..........         ..|+....+|...  .+..|    .+++++.+
T Consensus        93 ~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~---------~~g~~v~~v~~~~--~~~~d----~~~l~~~i  157 (401)
T PRK10874         93 SINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQ---------QTGAKVVKLPLGA--DRLPD----VDLLPELI  157 (401)
T ss_pred             HHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHH---------HhCCEEEEEecCC--CCcCC----HHHHHHhc
Confidence            99999886531  24668899999988763221111100         0133332222211  11122    56777777


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cc
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KG  325 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~  325 (480)
                      +    +++++|++..+++++|.+.+    +++|.++|+++|+++|+|++|. +|...     .+.....+|++++|  |.
T Consensus       158 ~----~~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~-----~~~~~~~~d~~~~s~~K~  223 (401)
T PRK10874        158 T----PRTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP-----ADVQALDIDFYAFSGHKL  223 (401)
T ss_pred             C----cCcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc-----CCchhcCCCEEEEecccc
Confidence            4    36778888888889998887    9999999999999999999996 33221     22223357877655  96


Q ss_pred             cccCccccccccCHHHHHhhcCCCcc---------------------ccCCCcHHHHHHHHHHHHHhhhh---HHHHHHH
Q 011669          326 IGNGIPLGAVVTTPEIAEVLTRRNYF---------------------NTFGGNPVCTAAGHAVLKVIQKD---KLQNNAH  381 (480)
Q Consensus       326 ~g~G~pig~v~~~~~~~~~l~~~~~~---------------------~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~  381 (480)
                      +|. ..+|++++++++++.+.....+                     .....|..+.++..++++.+.+.   ...++.+
T Consensus       224 ~gp-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~  302 (401)
T PRK10874        224 YGP-TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSR  302 (401)
T ss_pred             cCC-CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            652 2469999999988776532100                     00123445666666777766543   3445555


Q ss_pred             HHHHHHHHHHHHhHHhcCceeeEe-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----------C
Q 011669          382 VVGSYLKERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----------G  450 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----------~  450 (480)
                      ++.+++++.|+++    +.+.... ..+.++.+.+..         ....++.+.|.++||.+.++...          .
T Consensus       303 ~l~~~l~~~l~~~----~g~~~~~~~~~~i~~~~~~~---------~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~  369 (401)
T PRK10874        303 SLATLAEDALAKL----PGFRSFRCQDSSLLAFDFAG---------VHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVT  369 (401)
T ss_pred             HHHHHHHHHHhcC----CCEEEeCCCCCcEEEEEECC---------cCHHHHHHHHHHCCcEEeccccchHHHHHHhCCC
Confidence            5566666655543    3222221 233455555421         01356778888999999875421          3


Q ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          451 NVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       451 ~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++||++...+|++||+.++++|+++++.
T Consensus       370 ~~iRiS~~~~nt~edid~ll~al~~~~~~  398 (401)
T PRK10874        370 GTLRASFAPYNTQSDVDALVNAVDRALEL  398 (401)
T ss_pred             CEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999998764

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.91  E-value=2.7e-22  Score=206.67  Aligned_cols=310  Identities=15%  Similarity=0.177  Sum_probs=188.9

Q ss_pred             HHHHHHHHHHHhC----CCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCC
Q 011669          142 AIADFAEALASKM----PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (480)
Q Consensus       142 ~~~~l~e~L~~~~----~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~  217 (480)
                      ...++++.+.+.+    +.+.++|++|+|+++|++.++....  .+++.|++.+|.|.++........            
T Consensus       100 LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~--~pGD~Vlv~~P~Y~~f~~~~~~~~------------  165 (447)
T PLN02607        100 FRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRT------------  165 (447)
T ss_pred             HHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC--CCCCEEEEcCCCCcchHHHHHhcC------------
Confidence            3344444444433    2456789999999999999877543  367899999999987654332111            


Q ss_pred             CeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      |+..++++......|..|    .+.++++++..  ...+++++++...+|++|.+ ++++.+++|.++|++||+++|+||
T Consensus       166 g~~vv~v~~~~~~~f~~~----~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~-~s~e~l~~l~~~~~~~~i~lI~DE  240 (447)
T PLN02607        166 GVKIVPIHCDSSNNFQVT----PQALEAAYQEAEAANIRVRGVLITNPSNPLGAT-VQRSVLEDILDFVVRKNIHLVSDE  240 (447)
T ss_pred             CcEEEEEeCCCCCCCcCC----HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcc-cCHHHHHHHHHHHHHCCCEEEEec
Confidence            333444332222233334    45666665421  12356666665556777765 588999999999999999999999


Q ss_pred             cccCccccCCCccccc----ccCC-C-cc----eeeeccccc-cCcccccccc-CHHHHHhhcCCCccccC-CCcHHHHH
Q 011669          296 VQAGFARTGSHFWGFE----AHGV-V-PD----IVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTF-GGNPVCTA  362 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~----~~~~-~-pD----ivt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~~~t~-~~~~~~~a  362 (480)
                      +|.++-..+..+....    ..+. . ++    +.+|||.+| +|+|+||+++ ++++++.+....   .+ +.+.+++.
T Consensus       241 iYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~---~~~~~s~~~q~  317 (447)
T PLN02607        241 IYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS---SFTLVSSQTQH  317 (447)
T ss_pred             cccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHh---hcCCCCHHHHH
Confidence            9987543331222211    1110 1 22    337999999 8999999998 567766655332   22 34566777


Q ss_pred             HHHHHHHHhhhhHHH-HHHHHHHHHHHHH---HHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-
Q 011669          363 AGHAVLKVIQKDKLQ-NNAHVVGSYLKER---LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-  437 (480)
Q Consensus       363 aa~a~L~~i~~~~~~-~~~~~~~~~l~~~---L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-  437 (480)
                      ++.+.|+   ++++. +.+.++.++++++   +.+..+++++.......|+|+|+++.....  .+......++++.++ 
T Consensus       318 ~~~~~L~---d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~--~~~~~~e~~l~~~ll~  392 (447)
T PLN02607        318 LLASMLS---DEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLE--TPTREGELALWDSILR  392 (447)
T ss_pred             HHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhhc--CCCchhHHHHHHHHHH
Confidence            6666654   33332 2333333333333   333333344322223458899999843110  111122345666665 


Q ss_pred             HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          438 EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       438 ~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.||.+.||..+    .+++||+... .+++++++++++|.+++++
T Consensus       393 ~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~  437 (447)
T PLN02607        393 EVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDR  437 (447)
T ss_pred             hCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Confidence            579999998654    4799999442 4799999999999998753

>PLN02231 alanine transaminase

Probab=99.91  E-value=4.1e-22  Score=208.79  Aligned_cols=336  Identities=16%  Similarity=0.176  Sum_probs=200.1

Q ss_pred             HHHHHHHHHHHHhc-cccccccC-ChHHHHHHHHHHHhC------CCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEE
Q 011669          118 PYVVDSIVNQIKRI-QHSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIIS  189 (480)
Q Consensus       118 p~v~~A~~~~~~~~-~~~~~~~~-~~~~~~l~e~L~~~~------~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~  189 (480)
                      .++++.+.+.+... ......|. .....+|++.+++++      +.+.++|++|+|+++|+..++++... .+++.|++
T Consensus       143 ~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~-~~gd~Vli  221 (534)
T PLN02231        143 ADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEKDGILC  221 (534)
T ss_pred             HHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc-CCCCEEEE
Confidence            46666666666542 11122222 334455555555543      34567999999999999999987642 25689999


Q ss_pred             EcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC--CceEEEEEcccCCCC
Q 011669          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS--GHVAGFLSESIQGVG  267 (480)
Q Consensus       190 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~  267 (480)
                      ..|+|.++.......             |...++++......|+.|    .++|++.++....  .+++++++...+|++
T Consensus       222 ~~P~Y~~y~~~~~~~-------------g~~~v~~~l~~~~~~~~d----~~~Le~~l~~~~~~~~~~k~ivl~nP~NPT  284 (534)
T PLN02231        222 PIPQYPLYSASIALH-------------GGTLVPYYLDEATGWGLE----ISELKKQLEDARSKGITVRALVVINPGNPT  284 (534)
T ss_pred             eCCCChhHHHHHHHc-------------CCEEEEEecCcccCCCCC----HHHHHHHHHHHhhcCCCeEEEEEeCCCCCC
Confidence            999998776554333             222333332222235545    5677777753211  145554444446777


Q ss_pred             cceeCCCChHHHHHHHHHHhCCEEEEcccccCcccc-CCCccccccc----CC---Cccee---eecccc-c-cCccccc
Q 011669          268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART-GSHFWGFEAH----GV---VPDIV---TMAKGI-G-NGIPLGA  334 (480)
Q Consensus       268 G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~-G~~~~~~~~~----~~---~pDiv---t~sK~~-g-~G~pig~  334 (480)
                      |.+ .+++.+++|.++|++||++||+||+|..+.+. +..+..+...    +.   ...++   +|||++ + .|+|+||
T Consensus       285 G~v-ls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy  363 (534)
T PLN02231        285 GQV-LAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGY  363 (534)
T ss_pred             CcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEE
Confidence            866 58999999999999999999999999988663 3222122110    11   11233   789987 4 6999999


Q ss_pred             ccc---CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH-------hhh-----hHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          335 VVT---TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-------IQK-----DKLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       335 v~~---~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~-------i~~-----~~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      +++   ++++++.+..... .+.+.+.++++++..+++-       .++     +.+.+.+++..+.+.+.|+    +++
T Consensus       364 ~~~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~----~~~  438 (534)
T PLN02231        364 MEVTGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALN----SLE  438 (534)
T ss_pred             EEEecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCC
Confidence            986   6788887754332 3456677788877776631       100     1122333444444444433    334


Q ss_pred             ceeeEecccee-EEEEEecCCCcCCCC----HHHHHHHHHHHH-HcCceeeccCcCC-----CEEEEeCCCCCCHHHHHH
Q 011669          400 IIGDVRGRGFL-LGVEFVTDRQLKTPA----KAETLYIMDKMK-EMGVLVGKGGFYG-----NVFRITPPLCFTKEDADY  468 (480)
Q Consensus       400 ~~~~v~g~g~~-~~i~~~~~~~~~~~~----~~~~~~~~~~l~-~~Gv~v~~~~~~~-----~~iRi~p~~~~t~~~id~  468 (480)
                      .+....+.|.| +|..+.-........    ......++..|+ +.||.+.||..|+     .++|++  +..+++++++
T Consensus       439 gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit--~~~~~e~l~e  516 (534)
T PLN02231        439 GVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCT--ILPQEDKIPA  516 (534)
T ss_pred             CceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEE--eCCCHHHHHH
Confidence            44444555554 553331100000000    000123445454 6799999986553     369999  5789999999


Q ss_pred             HHHHHHHHHhh
Q 011669          469 LVDVMDYSLSK  479 (480)
Q Consensus       469 ~l~~l~~~l~~  479 (480)
                      ++++|.+++++
T Consensus       517 al~RL~~~~~~  527 (534)
T PLN02231        517 IVSRLTEFHKS  527 (534)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>PRK08354 putative aminotransferase; Provisional

Probab=99.91  E-value=9.2e-22  Score=194.22  Aligned_cols=301  Identities=14%  Similarity=0.129  Sum_probs=197.2

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      +...+|||..+.  +.+  .+|.+.+++.+.+...    ..|+  ....++++++++++   ++|++|+|++||+..++.
T Consensus         6 ~~~~~i~l~~~~--np~--~p~~~~~a~~~~~~~~----~~yp--~~~~l~~~ia~~~~---~~I~vt~G~~~al~~~~~   72 (311)
T PRK08354          6 REEGLIDFSASV--NPY--PPEWLDEMFERAKEIS----GRYT--YYEWLEEEFSKLFG---EPIVITAGITEALYLIGI   72 (311)
T ss_pred             CccceeEecCCC--CCC--CCHHHHHHHHHHHHHh----hcCC--ChHHHHHHHHHHHC---CCEEECCCHHHHHHHHHH
Confidence            344699998775  333  4688999998776543    2343  24678999999985   359999999999987764


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      ++   .+++.|++.+++|.++...+....             ...+..+        .|    .+.+++.++    +...
T Consensus        73 ~~---~~gd~vlv~~P~y~~~~~~~~~~g-------------~~~~~~~--------~d----~~~l~~~~~----~~~~  120 (311)
T PRK08354         73 LA---LRDRKVIIPRHTYGEYERVARFFA-------------ARIIKGP--------ND----PEKLEELVE----RNSV  120 (311)
T ss_pred             hh---CCCCeEEEeCCCcHHHHHHHHHcC-------------CEEeecC--------CC----HHHHHHhhc----CCCE
Confidence            32   257889999999988766554332             2222211        12    456666654    1335


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCcccccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAV  335 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v  335 (480)
                      .++++| +|++|.+ .+.+.+++|.++|++||+++|+||+|.+|...+ ..  .. .+...-+-+|||.++ .|+|+||+
T Consensus       121 vi~~~P-~NPTG~~-~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~-~~--~~-~~~vi~~~S~SK~~~l~GlRiG~~  194 (311)
T PRK08354        121 VFFCNP-NNPDGKF-YNFKELKPLLDAVEDRNALLILDEAFIDFVKKP-ES--PE-GENIIKLRTFTKSYGLPGIRVGYV  194 (311)
T ss_pred             EEEecC-CCCCCCc-cCHHHHHHHHHHhhhcCcEEEEeCcchhccccc-cc--cC-CCcEEEEeccHhhcCCccceeeee
Confidence            667777 5677765 488889999999999999999999999885543 21  11 222223447999999 89999999


Q ss_pred             ccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEE
Q 011669          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF  415 (480)
Q Consensus       336 ~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~  415 (480)
                      ++   +.+.+....  ..+..+..+++++.+.++    +. .+++++..+++++..+.+....    ...+.|.++++++
T Consensus       195 v~---~~~~l~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~~~~~~  260 (311)
T PRK08354        195 KG---FEEAFRSVR--MPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWREKERFEKAL----YVKSDANFFIKDV  260 (311)
T ss_pred             ee---hHHHHHHcC--CCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHHHHHHhc----CCCCCCcEEEEEC
Confidence            98   334444322  234445555555555443    11 2334444444444444443222    1345677766654


Q ss_pred             ecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          416 VTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      .        +   ..++++.|+++||++.++..+  .+++||+   ..+.++.++++++|++.
T Consensus       261 ~--------~---~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~  309 (311)
T PRK08354        261 G--------D---AEKFVEFLKRNGILVRDCTSFGLPGYIRFS---VRDREENEKLIRALREW  309 (311)
T ss_pred             C--------C---HHHHHHHHHHCCeEEEecccCCCCCeEEEE---eCCHHHHHHHHHHHHHh
Confidence            1        1   356788899999999998655  3789999   34667788888888765

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=7.1e-23  Score=205.57  Aligned_cols=292  Identities=15%  Similarity=0.153  Sum_probs=190.4

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      +.|+.....++++++++.++.+.++|++++|++|++..+++.... .+++.|++.+++|..+...+...           
T Consensus        52 ~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~-~g~~~vli~~P~y~~y~~~~~~~-----------  119 (351)
T PRK01688         52 NRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCE-PGKDAILYCPPTYGMYSVSAETI-----------  119 (351)
T ss_pred             ccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcC-CCCCEEEEcCCCHHHHHHHHHHc-----------
Confidence            457777778999999999988888999999999999999986532 23478999999997654332221           


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                        |+..+.+|..  ..|..|    .+++++.++     ++++|++...+|++|.+. +.+.+++|.+.|++ ++++|+||
T Consensus       120 --G~~~~~v~~~--~~~~~d----~~~l~~~~~-----~~~lv~l~nPnNPTG~~~-~~~~l~~l~~~~~~-~~~vivDE  184 (351)
T PRK01688        120 --GVEIRTVPTL--DNWQLD----LPAIADNLD-----GVKVVYVCSPNNPTGNLI-NPQDLRTLLELTRG-KAIVVADE  184 (351)
T ss_pred             --CCEEEEeecC--CCCCCC----HHHHHHhcc-----CCcEEEEeCCCCCCCCCC-CHHHHHHHHHhCCC-CcEEEEEC
Confidence              3333333221  123333    455655542     445555555567777765 77778888888876 68999999


Q ss_pred             cccCccccCCCcccccccCCCcce---eeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHh
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDI---VTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDi---vt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i  371 (480)
                      +|..|.... ..  .......+++   -||||.+| +|+|+||+++++++++.+....  ..|+.|.+++.++.++|+.-
T Consensus       185 ay~~f~~~~-s~--~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~--~~~~v~~~~~~~a~~~L~~~  259 (351)
T PRK01688        185 AYIEFCPQA-SL--AGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKVI--APYPLSTPVADIAAQALSPQ  259 (351)
T ss_pred             chhhcCCCC-Ch--HHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhcc--CCCCCCHHHHHHHHHHHhcc
Confidence            998885221 11  1111222343   37999999 8999999999999998887543  34667777777777777521


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHhcCce-eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-
Q 011669          372 QKDKLQNNAHVVGSYLKERLTALKDKYGII-GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-  449 (480)
Q Consensus       372 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-  449 (480)
                      ..+.+.++.+ .....++.+.+...+++.+ ......+.++++.+..           ...+.+.|+++||+++.++.+ 
T Consensus       260 ~~~~~~~~~~-~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~~-----------~~~l~~~L~~~gi~vr~~~~~~  327 (351)
T PRK01688        260 GIAAMRERVA-EINANRQWLIAALKEIPCVEQVFDSETNYILARFTA-----------SSAVFKSLWDQGIILRDQNKQP  327 (351)
T ss_pred             hHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC-----------HHHHHHHHHHCCeEEEECCCcC
Confidence            1112222222 2222233333333344333 2345567888877621           356888899999999876432 


Q ss_pred             --CCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          450 --GNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       450 --~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                        .+++||+.   .++++++.++++|+
T Consensus       328 ~~~~~iRis~---~~~~e~~~l~~al~  351 (351)
T PRK01688        328 GLSNCLRITI---GTREECQRVIDALR  351 (351)
T ss_pred             CCCCeEEEeC---CCHHHHHHHHHhhC
Confidence              47899994   47899999998873

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.90  E-value=9e-22  Score=199.86  Aligned_cols=328  Identities=16%  Similarity=0.151  Sum_probs=204.3

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhcc-cccccc-----CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLY-----LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA  174 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~-----~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~A  174 (480)
                      |||..+.      +-.++.|.+++.+.+.... +....+     ......++++++++.++.+.++|+|++|||++++.+
T Consensus         2 yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~a   75 (379)
T TIGR03402         2 YLDNNAT------TRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTA   75 (379)
T ss_pred             cCCCcCC------CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHH
Confidence            6776543      3457899999998876431 111111     123467888999999987778899999999999999


Q ss_pred             HHHHHhh-cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          175 IMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       175 lk~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      ++.+... .+++.|++....|++.......+..          .|+....+|....+  ..|    .++++++++    +
T Consensus        76 l~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~----------~G~~v~~v~~~~~g--~~~----~~~l~~~i~----~  135 (379)
T TIGR03402        76 IKSALAAQPEKRHIITTAVEHPAVLSLCQHLEK----------QGYKVTYLPVDEEG--RLD----LEELRAAIT----D  135 (379)
T ss_pred             HHHHHHhcCCCCeEEEcccccHHHHHHHHHHHH----------cCCEEEEEccCCCC--cCC----HHHHHHhcC----C
Confidence            9876432 3456677666666543322211110          13322222221111  122    567777774    3


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCcc
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIP  331 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~p  331 (480)
                      +++++++..+++++|.+.+    +++|.++|++||+++|+|++|+ +|..     .++.....+|++++|  | +.+...
T Consensus       136 ~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~-----~~~~~~~~~D~~~~s~~K-~~gp~G  204 (379)
T TIGR03402       136 DTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI-----PIDLKEMNIDMLSLSGHK-LHGPKG  204 (379)
T ss_pred             CcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cccc-----ccCcccCCCCEEEEcHHH-cCCCCc
Confidence            6788888888899999887    8999999999999999999997 4422     133334568999888  9 655455


Q ss_pred             ccccccCHHHHHhhcCCCc-------cccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669          332 LGAVVTTPEIAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (480)
Q Consensus       332 ig~v~~~~~~~~~l~~~~~-------~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  402 (480)
                      +|+++.+++..  +.+...       ......|..+..+..++++.+.+  ++..++.+++.+++++.|.+   ..+.+.
T Consensus       205 ~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~~  279 (379)
T TIGR03402       205 VGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLA---RIPDAR  279 (379)
T ss_pred             eEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---hCCCEE
Confidence            78887776541  222111       01123345556666677776543  23335555556666665553   122221


Q ss_pred             eEe---cc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---------------------CCEEEEeC
Q 011669          403 DVR---GR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---------------------GNVFRITP  457 (480)
Q Consensus       403 ~v~---g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi~p  457 (480)
                      -..   .. ...+.+.+..      +.   ...+...|.++||.+..+...                     .+.+|+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~  350 (379)
T TIGR03402       280 LNGDPTKRLPNTVNISFEY------IE---GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSL  350 (379)
T ss_pred             EeCCCccCCCCEEEEEecC------CC---HHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEc
Confidence            110   01 1122222211      11   356777888899999865210                     25799999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Q 011669          458 PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +..+|++|||++++.|++++++
T Consensus       351 ~~~~t~~di~~~~~~l~~~~~~  372 (379)
T TIGR03402       351 SRYNTEEDIDYVLEVLPPIIAR  372 (379)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.90  E-value=5.9e-22  Score=200.32  Aligned_cols=304  Identities=14%  Similarity=0.149  Sum_probs=187.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCe
Q 011669          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~  219 (480)
                      ++...++.|.++++++.  +.+.+++||++++..++....  .+++.|++..+.++.... .....            |+
T Consensus        50 ~~~~~~~~e~lA~~~g~--~~~~i~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~h~s~~~-~~~~~------------g~  112 (370)
T TIGR02539        50 KPPIHDFLEDLAEFLGM--DEARVTHGAREGKFAVMHALC--KEGDWVVLDGLAHYTSYV-AAERA------------GL  112 (370)
T ss_pred             chHHHHHHHHHHHHhCC--CceEEECChHHHHHHHHHHhh--CCCCEEEECCcccHHHHH-HHHHc------------CC
Confidence            34678889999999854  457789999999999988664  356777776666554332 22222            23


Q ss_pred             eEecCCCCcCCCCCCChHHHHHHHHHHHHccC---CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc
Q 011669          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGT---SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (480)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~---~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  296 (480)
                      ....+|......|..|    .+++++.++...   ..++++|+++.++++.|.+.+    +++|.++|++||+++|+||+
T Consensus       113 ~~~~~~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea  184 (370)
T TIGR02539       113 NVKEVPHTGHPEYKVD----PEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCA  184 (370)
T ss_pred             EEEEEecCCcccCCcC----HHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECc
Confidence            3222221111112234    677777775311   125678888888888898876    99999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCcce--eeeccccccCccccccccCHHHHHhhcCCCccccC--------CCcHHHHHHHHH
Q 011669          297 QAGFARTGSHFWGFEAHGVVPDI--VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTF--------GGNPVCTAAGHA  366 (480)
Q Consensus       297 ~tgfgr~G~~~~~~~~~~~~pDi--vt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~--------~~~~~~~aaa~a  366 (480)
                      |. +|..+     ....+..+|+  .+++|++++|.|+||+++++++++.+........+        .....++.++.+
T Consensus       185 ~~-~g~~~-----~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (370)
T TIGR02539       185 YT-VGRMP-----VSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMA  258 (370)
T ss_pred             cc-cCCcC-----CCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHH
Confidence            97 44322     1111123454  47899999777899999999999888764321111        111225555666


Q ss_pred             HHHHhhhh-HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCce-ee
Q 011669          367 VLKVIQKD-KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL-VG  444 (480)
Q Consensus       367 ~L~~i~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~  444 (480)
                      +|+...+. ....+..+..++++++|+++  .+..+........++.+++.........+......+.+.|+++||+ +.
T Consensus       259 al~~~~~~l~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir  336 (370)
T TIGR02539       259 SFPHVVERVKRWDEEVKKTRWFVAELEDI--GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIR  336 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCcccc
Confidence            66542221 11222233345677777665  1211111234455665554210000000011235688999999997 66


Q ss_pred             ccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          445 KGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       445 ~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++.  .+++||+. +.+|++|+++++++|++++++
T Consensus       337 ~~~--~~~iRis~-~~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       337 SGQ--TKYFKLSV-YGLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             CCc--ceEEEEEe-cCCCHHHHHHHHHHHHHHHHh
Confidence            533  46899997 468999999999999998865

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.90  E-value=3e-22  Score=204.82  Aligned_cols=338  Identities=14%  Similarity=0.109  Sum_probs=201.2

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc---ccccccCChHHHHHHHHHHHhCC------CCCCEEE--EeCCH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMP------GNLKVVF--FTNSG  167 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~l~e~L~~~~~------~~~~~v~--f~~sG  167 (480)
                      ...+|+..|.+...  ..++.+.+++.+.+....   ......+.....+|++.+++++.      .+.++|.  .|++|
T Consensus        29 ~~~i~l~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~  106 (404)
T PTZ00376         29 PSKVNLGIGAYRDE--NGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSG  106 (404)
T ss_pred             cccEecccceeECC--CCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCc
Confidence            35588877764211  122334455544432211   11112224455667777776542      2446777  48899


Q ss_pred             HHHHHHHHHHHHhh-cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          168 TEANELAIMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       168 seA~~~Alk~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      ++|++.++.+.+.. .+++.|++.+++|+++...+...             |...+++|......|+.|    .+.+++.
T Consensus       107 ~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~l~~~~~~~~d----~~~l~~~  169 (404)
T PTZ00376        107 TGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSA-------------GLNVKEYRYYDPKTKGLD----FDGMLED  169 (404)
T ss_pred             chHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-------------CCceeeccccCcccCCcC----HHHHHHH
Confidence            99999998755433 46789999999998876654433             223333332111123334    5677777


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--C---cccccc-cCCCccee
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--H---FWGFEA-HGVVPDIV  320 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~---~~~~~~-~~~~pDiv  320 (480)
                      +++.. .+.+++++...||++|.+. +++.+++|.++|++||+++|+||+|.+|...+.  .   ...+.. .+...-+.
T Consensus       170 ~~~~~-~~~~~~~~~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~  247 (404)
T PTZ00376        170 LRTAP-NGSVVLLHACAHNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQ  247 (404)
T ss_pred             HHhCC-CCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence            75432 2345666666778888764 899999999999999999999999998865330  0   111111 11223344


Q ss_pred             eeccccc-cCcccccc---ccCHHHHHhhcCC---CccccC-CCcHHHHHHHHHHHHHhh-hhHHHH-------HHHHHH
Q 011669          321 TMAKGIG-NGIPLGAV---VTTPEIAEVLTRR---NYFNTF-GGNPVCTAAGHAVLKVIQ-KDKLQN-------NAHVVG  384 (480)
Q Consensus       321 t~sK~~g-~G~pig~v---~~~~~~~~~l~~~---~~~~t~-~~~~~~~aaa~a~L~~i~-~~~~~~-------~~~~~~  384 (480)
                      +|||.++ .|+|+||+   ++++++++.+...   ....++ +.+++++.++.++|+.-. .+.+.+       ++++..
T Consensus       248 SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r  327 (404)
T PTZ00376        248 SFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMR  327 (404)
T ss_pred             eCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999 89999998   5788765544221   112333 346788888887775211 012222       333334


Q ss_pred             HHHHHHHHHhHHhcC-ceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcCCCEEEEeCCCCC
Q 011669          385 SYLKERLTALKDKYG-IIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFYGNVFRITPPLCF  461 (480)
Q Consensus       385 ~~l~~~L~~l~~~~~-~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~iRi~p~~~~  461 (480)
                      +.+.+.|+++  ..+ .+... ...|+++|+.+.             .++++.|.++ ||.+.|++      ||+.+ ..
T Consensus       328 ~~l~~~L~~~--~~~~~~~~~~p~gg~f~~~~~~-------------~~~~~~L~~~~~v~v~p~~------Ris~~-~~  385 (404)
T PTZ00376        328 QLLYDELKAL--GSPGDWEHIINQIGMFSFTGLT-------------KEQVERLIEKYHIYLLDNG------RISVA-GL  385 (404)
T ss_pred             HHHHHHHHhc--CCCCcccccccCceEEEecCCC-------------HHHHHHHHHhCCEeecCCC------eEEEe-cc
Confidence            4444444332  111 11122 334666777651             3466667765 99998862      88843 27


Q ss_pred             CHHHHHHHHHHHHHHHhh
Q 011669          462 TKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       462 t~~~id~~l~~l~~~l~~  479 (480)
                      +.+++++++++|++++..
T Consensus       386 ~~~~~~~~~~~l~~~~~~  403 (404)
T PTZ00376        386 TSKNVDYVAEAIHDVVRN  403 (404)
T ss_pred             CHHhHHHHHHHHHHHHhc
Confidence            999999999999998754

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.90  E-value=6.4e-22  Score=204.81  Aligned_cols=346  Identities=13%  Similarity=0.150  Sum_probs=196.8

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHH----h-CCC---C--CCEEEEeCCHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALAS----K-MPG---N--LKVVFFTNSGTE  169 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~----~-~~~---~--~~~v~f~~sGse  169 (480)
                      ..+|+..|.+..   -.++.|.+ +.+.+....++.    .....++++++++    . ...   .  .++|++|+|+++
T Consensus       101 ~~i~l~~g~p~~---~~~~~v~e-~~~~~~~~~Y~~----~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~  172 (527)
T PRK09275        101 DAVSYVRDQLGF---DADEFVYE-LVDGIIGDNYPV----PDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTA  172 (527)
T ss_pred             HHHhhcCCCCCC---CCCHHHHH-HHHHHhcCCCCC----CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence            456666665533   23444555 555553221222    2333445554444    2 111   1  248999999999


Q ss_pred             HHHHHHHHHH---hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          170 ANELAIMMAR---LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       170 A~~~Alk~ar---~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      |+..++....   ...++++|++.+|+|..+...+.....           ++..++++......|..|    .++++++
T Consensus       173 al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~-----------~~~~v~v~~~~~~~f~~d----~~~l~~~  237 (527)
T PRK09275        173 AMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRY-----------DLEVVHINADEENEWQYP----DSELEKL  237 (527)
T ss_pred             HHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCC-----------CeEEEEeecCcccCCCCC----HHHHHhh
Confidence            9999987521   234788999999999876554322211           333333332212234444    4667766


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCcceeeecc
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAK  324 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK  324 (480)
                      ++    .++++|++...+|++|.+ .+++.+++|.++|++  +|+++|+||+|..|.......... ..+...-+.+|||
T Consensus       238 ~~----~~tkai~l~nP~NPTG~v-~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~-~~~~~I~v~SfSK  311 (527)
T PRK09275        238 RD----PSIKALFLVNPSNPPSVA-MSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAV-LPYNTILVYSFSK  311 (527)
T ss_pred             cC----CCCCEEEEeCCcCCcCCC-CCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHh-CCCCEEEEeehhh
Confidence            53    356666665556777765 489999999999965  599999999999875311011111 1122233448999


Q ss_pred             ccc-cCccccccccCHH-----HHHhh--------------------------------cCCCccccCCCcHHHHHH-HH
Q 011669          325 GIG-NGIPLGAVVTTPE-----IAEVL--------------------------------TRRNYFNTFGGNPVCTAA-GH  365 (480)
Q Consensus       325 ~~g-~G~pig~v~~~~~-----~~~~l--------------------------------~~~~~~~t~~~~~~~~aa-a~  365 (480)
                      .++ .|||+||++++++     +++.+                                .......|.+.+.+.|.+ ++
T Consensus       312 ~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al  391 (527)
T PRK09275        312 YFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMAL  391 (527)
T ss_pred             hccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence            998 7999999999986     33322                                112234566667666665 32


Q ss_pred             HH-HHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCcee--eEeccceeEEEEEecCCC---cCCC-----CHHHHHHHH
Q 011669          366 AV-LKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIG--DVRGRGFLLGVEFVTDRQ---LKTP-----AKAETLYIM  433 (480)
Q Consensus       366 a~-L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~v~g~g~~~~i~~~~~~~---~~~~-----~~~~~~~~~  433 (480)
                      .+ ...++. +.+   .+++.+.++++...+.+.++...  .....++++++++..-..   ....     ......+++
T Consensus       392 ~~~~all~~~~~~---~~~~~~~~~~Rr~~l~~~Lg~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~  468 (527)
T PRK09275        392 FSLFALLDEEDAY---KKAMKDIIRRRYKALYEGLGLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLL  468 (527)
T ss_pred             HHHHHHHhCchHH---HHHHHHHHHHHHHHHHHHcCCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHH
Confidence            11 111222 233   33333344444444443333211  223445566776632110   0000     000134455


Q ss_pred             HHH-HHcCceeeccCcCC---CEEEEeCCCC-CCHHHHHHHHHHHHHHHhh
Q 011669          434 DKM-KEMGVLVGKGGFYG---NVFRITPPLC-FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       434 ~~l-~~~Gv~v~~~~~~~---~~iRi~p~~~-~t~~~id~~l~~l~~~l~~  479 (480)
                      ..| .+.||.+.||..|+   +++||+  ++ .+++++.++.++|.+++.+
T Consensus       469 ~~Ll~e~gV~v~PG~~Fg~~~~~vRis--~a~~~~~~~~~~~~rl~~~l~~  517 (527)
T PRK09275        469 FRLAEETGVVLLPGGGFGGPEWSVRVS--LANLNEEDYAKIGKAIRKLLDE  517 (527)
T ss_pred             HHHHhcCCEEEeCchhhCCCCCeEEEE--EecCCHHHHHHHHHHHHHHHHH
Confidence            555 46799999986664   589999  55 5889999999999988764

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.90  E-value=5.4e-22  Score=202.53  Aligned_cols=339  Identities=15%  Similarity=0.084  Sum_probs=199.2

Q ss_pred             EEEeccCCcccccCCCCC--HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC------CCCCEE--EEeCCHHH
Q 011669          100 RYLDAFGGIATVCCGHCH--PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP------GNLKVV--FFTNSGTE  169 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~--p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~------~~~~~v--~f~~sGse  169 (480)
                      ..|||..|.....-++.+  +.+.+++.+.++... .....+.....+|++.+++++.      .+.++|  ++|+|+++
T Consensus        27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~-~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~  105 (396)
T PRK09257         27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETET-TKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTG  105 (396)
T ss_pred             CcEecceeeEECCCCCEeccHHHHHHHHHhccccc-CCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccH
Confidence            458888876432212333  678888777654321 1111123445556666666541      135565  89999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      |+..++++.....+++.|++.+++|.++...+...+             ...+++|......|+.|    .+++++.++.
T Consensus       106 al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g-------------~~~v~v~~~~~~~~~~d----~~~l~~~~~~  168 (396)
T PRK09257        106 ALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAG-------------LEVKTYPYYDAATKGLD----FDAMLADLSQ  168 (396)
T ss_pred             HHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcC-------------CcEEEEeccccccCccC----HHHHHHHHHh
Confidence            999999765433467899999999988765554332             22233321001113333    5677777764


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcccc-CCCccc---ccc-cCCCcceeeecc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART-GSHFWG---FEA-HGVVPDIVTMAK  324 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~-G~~~~~---~~~-~~~~pDivt~sK  324 (480)
                      . ..+..++++...||++|.+ .+++.+++|.++|++||+++|+||+|.+|... +.....   +.. .+...-+.+|||
T Consensus       169 ~-~~~~~~~i~~~p~NPTG~~-~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK  246 (396)
T PRK09257        169 A-PAGDVVLLHGCCHNPTGAD-LTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSK  246 (396)
T ss_pred             C-CCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCC
Confidence            2 2234555556678888876 48999999999999999999999999988643 111111   111 112233448999


Q ss_pred             ccc-cCcccccccc---CHHH----HHhhcCCCccccCCCcHHHHHHHHHHHHHhh-h---hHHHHHHHHHHHHHHHHHH
Q 011669          325 GIG-NGIPLGAVVT---TPEI----AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-K---DKLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       325 ~~g-~G~pig~v~~---~~~~----~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~-~---~~~~~~~~~~~~~l~~~L~  392 (480)
                      .++ .|+|+||+++   +++.    +..+.........+.+++.+.++.+.|+.-. .   ++..+++++..+..++.+.
T Consensus       247 ~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~  326 (396)
T PRK09257        247 NFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLV  326 (396)
T ss_pred             cCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999 5999999973   4443    3333222222334457777777777664211 0   1222222222222333333


Q ss_pred             HhHHhcC---ceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHH
Q 011669          393 ALKDKYG---IIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADY  468 (480)
Q Consensus       393 ~l~~~~~---~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~  468 (480)
                      +..+++.   .+.. ....|+++|+.+.            ...+.+.+.++||.+.+.    +  ||+.+ +.++++|++
T Consensus       327 ~~L~~~~~~~~~~~~~p~gg~~~w~~l~------------~~~~~~l~~~~~V~~~p~----~--ri~~~-~~~~~~i~~  387 (396)
T PRK09257        327 EALKAKGPSRDFDFIARQRGMFSYSGLT------------PEQVDRLREEFGVYAVGS----G--RINVA-GLNESNIDY  387 (396)
T ss_pred             HHHHhcCCCCCcccccccceEEEecCCC------------HHHHHHHHHcCCEEEcCC----C--eEEEe-eCCHHHHHH
Confidence            3333332   1222 3345777888761            133445556789998763    2  88853 489999999


Q ss_pred             HHHHHHHHH
Q 011669          469 LVDVMDYSL  477 (480)
Q Consensus       469 ~l~~l~~~l  477 (480)
                      ++++|.+++
T Consensus       388 ~~~~i~~~~  396 (396)
T PRK09257        388 VAEAIAAVL  396 (396)
T ss_pred             HHHHHHhhC
Confidence            999998763

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.90  E-value=3.7e-21  Score=193.39  Aligned_cols=321  Identities=17%  Similarity=0.147  Sum_probs=205.8

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC--EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK--VVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~--~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~  193 (480)
                      .+|.|.+++.+.   ..|....| .+...++++.|+++++.+.+  .++++.||+++++.++.....  +++++++..++
T Consensus        10 ~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~--~~~~vi~~~~~   83 (355)
T TIGR03301        10 TSATVRDAMLVD---WCHWDSEF-NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP--RDGKLLVLING   83 (355)
T ss_pred             CCHHHHHHhhhh---ccCCCHHH-HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC--CCCeEEEECCC
Confidence            457777777652   22322223 36788999999999875443  688999999999999987543  46778888887


Q ss_pred             cccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       194 yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      +++.........           .|.+...++...  .+..|    .+++++.++..  .+++.+++-.+++++|.+.+ 
T Consensus        84 ~~~~~~~~~a~~-----------~g~~~~~i~~~~--~~~~d----~~~l~~~l~~~--~~~~~v~~~~~~~~~G~~~~-  143 (355)
T TIGR03301        84 AYGERLAKICEY-----------LGIPHTDLNFSE--YEPPD----LNRIEEALAAD--PDITHVATVHHETTTGILNP-  143 (355)
T ss_pred             chhhHHHHHHHH-----------cCCceEEEecCC--CCCCC----HHHHHHHHHhC--CCceEEEEEecCCcccchhH-
Confidence            776532111110           122222222111  11123    57788887642  24555655556667788776 


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCC----
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN----  349 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~----  349 (480)
                         +++|.++|++||+++|+|++++ +|..   .+.+..+++..-+.+++|+++++.++|++++++++++.+....    
T Consensus       144 ---~~~i~~l~~~~~~~livD~~~s-~g~~---~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~  216 (355)
T TIGR03301       144 ---LEAIAKVARSHGAVLIVDAMSS-FGAI---PIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLY  216 (355)
T ss_pred             ---HHHHHHHHHHcCCEEEEEeccc-cCCc---ccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCce
Confidence               8999999999999999999886 5422   2223333443334578899986666799999999888765211    


Q ss_pred             -------------ccccCCCcHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHhHHhcCceee-EeccceeE
Q 011669          350 -------------YFNTFGGNPVCTAAGHAVLKVIQKDK----LQNNAHVVGSYLKERLTALKDKYGIIGD-VRGRGFLL  411 (480)
Q Consensus       350 -------------~~~t~~~~~~~~aaa~a~L~~i~~~~----~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~  411 (480)
                                   ....++.+..++.++.++|+.+.++.    ..++.++..+++++.|+++  .+..+.. ....+.++
T Consensus       217 ~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~--g~~~~~~~~~~~~~~~  294 (355)
T TIGR03301       217 LDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL--GFQPLLPERWQSPIIV  294 (355)
T ss_pred             eeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc--CCeeecCCCCCCCcEE
Confidence                         01234567777788788888775433    4455666667777776654  2211111 12234556


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-GNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      ++.+....      .....++.+.|.++||++.++... .+++||++...++++|++++++.|++++
T Consensus       295 ~~~~~~~~------~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       295 SFLYPDDP------DFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             EEECCCCC------cchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence            66653211      012457888999999999987532 3689999887889999999999998763

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.90  E-value=2.2e-20  Score=191.35  Aligned_cols=332  Identities=14%  Similarity=0.085  Sum_probs=215.0

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-c-cccc-----CChHHHHHHHHHHHhCCC-CCCEEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-S-TVLY-----LNHAIADFAEALASKMPG-NLKVVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~-~~~~-----~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGse  169 (480)
                      +..|||..+.      |..++.|.+++.+.+.+... . ...+     ..+...+++++|+++++. +.++|+|++|+||
T Consensus        23 ~~iYld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~   96 (406)
T PRK09295         23 PLAYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTE   96 (406)
T ss_pred             ceEEEeCccc------ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHH
Confidence            4589997653      34678999999888865321 1 1111     134567889999999975 5678999999999


Q ss_pred             HHHHHHHHHH--hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          170 ANELAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       170 A~~~Alk~ar--~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++..+++...  ...+++.||+.+..||+..........         ..|+....++...  .+..|    .+++++++
T Consensus        97 ~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~---------~~g~~v~~v~~~~--~~~~d----~~~l~~~i  161 (406)
T PRK09295         97 GINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCA---------RVGAELRVIPLNP--DGTLQ----LETLPALF  161 (406)
T ss_pred             HHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHH---------HcCcEEEEEecCC--CCCCC----HHHHHHhc
Confidence            9998887542  224567899888887764322211110         0133322222111  11122    56777777


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cc
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KG  325 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~  325 (480)
                      +    +++++|++..+++++|.+.+    +++|.++|+++|+++|+|++|+ +|...     ++.....+|++++|  |.
T Consensus       162 ~----~~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~-----~~~~~~~~D~~~~s~~K~  227 (406)
T PRK09295        162 D----ERTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP-----VDVQALDCDFYVFSGHKL  227 (406)
T ss_pred             C----CCcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc-----cCchhcCCCEEEeehhhc
Confidence            4    36788888888899999987    9999999999999999999996 44321     22223456877655  96


Q ss_pred             cccCccccccccCHHHHHhhcCCCcc----------------------ccCCCcHHHHHHHHHHHHHhhh---hHHHHHH
Q 011669          326 IGNGIPLGAVVTTPEIAEVLTRRNYF----------------------NTFGGNPVCTAAGHAVLKVIQK---DKLQNNA  380 (480)
Q Consensus       326 ~g~G~pig~v~~~~~~~~~l~~~~~~----------------------~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~  380 (480)
                      +| .-.+|++++++++++.+.....+                      .+-..|..+..+..++++.+.+   +...++.
T Consensus       228 ~g-p~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~  306 (406)
T PRK09295        228 YG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYE  306 (406)
T ss_pred             cC-CCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            55 23479999999887765421110                      1113456677778888887765   3455667


Q ss_pred             HHHHHHHHHHHHHhHHhcCceeeE--eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc----------
Q 011669          381 HVVGSYLKERLTALKDKYGIIGDV--RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF----------  448 (480)
Q Consensus       381 ~~~~~~l~~~L~~l~~~~~~~~~v--~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------  448 (480)
                      +++.++++++|.++    +.+.-.  ...+.++.+.+..         .....+.+.|.++||.++.|..          
T Consensus       307 ~~l~~~l~~~l~~~----~~~~~~~~~~~~~iv~~~~~~---------~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~  373 (406)
T PRK09295        307 QNLMHYALSQLESV----PDLTLYGPQNRLGVIAFNLGK---------HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYN  373 (406)
T ss_pred             HHHHHHHHHHHhcC----CCEEEeCCCCCceEEEEEECC---------cCHHHHHHHHHhCCeEEeccccchHHHHHHHC
Confidence            77777777776654    212111  1123344444421         0134567788899999976531          


Q ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          449 YGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       449 ~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ..+.+|+++....|++|||.++++|+++..
T Consensus       374 ~~~~iRiS~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        374 VPAMCRASLAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             CCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            125799999999999999999999998753

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.89  E-value=5.8e-21  Score=192.79  Aligned_cols=319  Identities=15%  Similarity=0.099  Sum_probs=205.0

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC--CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~--~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~  193 (480)
                      .++.|.+++.++.   .|.. ........++++.|+++++...  +.|++++|||++++.++.....  +++++|+..++
T Consensus        14 ~~~~v~~~~~~~~---~~~~-~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~--~~~~vlv~~~~   87 (363)
T TIGR02326        14 TSRTVKEAMLFDW---CTWD-SDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP--KDGKLLVVING   87 (363)
T ss_pred             CCHHHHHHhCCCC---CCCC-hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC--CCCeEEEEeCC
Confidence            4566776655433   1211 1234566788999999997653  3799999999999999976532  55677777777


Q ss_pred             cccccccc-cccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeC
Q 011669          194 YHGNAAGT-MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL  272 (480)
Q Consensus       194 yhG~~~~~-~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  272 (480)
                      +|+..... ...            .|+....++....+.  .|    .++++++++..  .+++.+.+-.+++++|.+.+
T Consensus        88 ~~~~~~~~~a~~------------~g~~~~~v~~~~~~~--~d----~~~l~~~l~~~--~~~~~v~~~~~~~~tG~~~~  147 (363)
T TIGR02326        88 AYGARIVQIAEY------------LGIPHHVVDTGEVEP--PD----VVEVEAILAAD--PAITHIALVHCETTTGILNP  147 (363)
T ss_pred             hhhHHHHHHHHH------------cCCceEEEeCCCCCC--CC----HHHHHHHHhhC--CCccEEEEEeecCCccccCc
Confidence            77653211 111            122222222211111  12    67888888642  24556666667788898887


Q ss_pred             CCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccccccCHHHHHhhcCCC-
Q 011669          273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN-  349 (480)
Q Consensus       273 ~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~-  349 (480)
                          +++|.++|++||+++|+|++|+ +|...   .....+  .+|++  +++|+++++.++|+++++++.++.+.... 
T Consensus       148 ----i~~I~~l~~~~g~~livD~~~~-~g~~~---~~~~~~--~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~  217 (363)
T TIGR02326       148 ----IEAVAKLAHRHGKVTIVDAMSS-FGGIP---IDIAEL--HIDYLISSANKCIQGVPGFGFVIARQAELAACKGNAR  217 (363)
T ss_pred             ----HHHHHHHHHHcCCEEEEEcccc-ccCcc---cchhhc--CccEEEecCccccccCCcceEEEECHHHHHHhhcCCC
Confidence                9999999999999999999986 55322   222333  45666  56799987667899999998877653211 


Q ss_pred             -----------------ccccCCCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCceeeE-ecc
Q 011669          350 -----------------YFNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGR  407 (480)
Q Consensus       350 -----------------~~~t~~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~  407 (480)
                                       ....|..++..+.+..++|+.+.++    +..++.+++.+++++.|+++  .+..+... ...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~  295 (363)
T TIGR02326       218 SLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL--GFEPLLDDEIQS  295 (363)
T ss_pred             ceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc--CCeeccCcccCC
Confidence                             0123456677777777788776443    34566777777777777665  22222111 112


Q ss_pred             ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +.+.++.+....      ......+.+.|.++||.+.++..+ .+.+||++....+.+|+++++++|++++.
T Consensus       296 ~~~~~~~~~~~~------~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       296 PIITSFYSPEDP------DYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             ceEEEEECCCCC------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            344555542210      012456888899999999987533 47899997666899999999999999875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=3.5e-21  Score=193.65  Aligned_cols=291  Identities=13%  Similarity=0.131  Sum_probs=185.9

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      ..|+.....+|++++++.++.+.++|++|+|++|++..+++.... .+++.|++.+++|..+...+...           
T Consensus        55 ~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~-~g~d~vlv~~P~y~~y~~~~~~~-----------  122 (354)
T PRK04635         55 NRYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCE-PGQDSIACFGPTYGMYAISAETF-----------  122 (354)
T ss_pred             ccCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcC-CCCCeEEEcCCChHHHHHHHHHc-----------
Confidence            346655678999999999988888999999999999999986542 23378999999997654432211           


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                        |+..+.+|..  ..|..|    .+.++. +     .++++|++...+|++|.+. +.+.+++|.+.|+  ++++|+||
T Consensus       123 --g~~v~~v~~~--~~~~~~----~~~l~~-~-----~~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~--~~~vivDe  185 (354)
T PRK04635        123 --NVGVKALPLT--ADYQLP----LDYIEQ-L-----DGAKLVFICNPNNPTGTVI-DRADIEQLIEMTP--DAIVVVDE  185 (354)
T ss_pred             --CCEEEEEecC--CCCCCC----HHHHHh-c-----cCCCEEEEeCCCCCCCccC-CHHHHHHHHHhCC--CcEEEEeC
Confidence              3333333321  122223    334432 2     2566666667788888876 4455555555544  59999999


Q ss_pred             cccCccccCCCcccc-cccCCCcceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh
Q 011669          296 VQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK  373 (480)
Q Consensus       296 v~tgfgr~G~~~~~~-~~~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~  373 (480)
                      +|..|.... ..... ..++...-+.||||.+| +|+|+||+++++++++.+....  ..++.+...+.++.++|+....
T Consensus       186 ay~~~~~~~-s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~  262 (354)
T PRK04635        186 AYIEFCPEY-SVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRVI--APYPVPLPVSEIATQALSEAGL  262 (354)
T ss_pred             chHhhccCc-chHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhcccH
Confidence            998875221 11111 11111112348999999 8999999999999998876432  3466677777777777752111


Q ss_pred             hHH---HHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--
Q 011669          374 DKL---QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--  448 (480)
Q Consensus       374 ~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--  448 (480)
                      +.+   .+++++.++++.+.|++    ++.+...++.|.|+++.+..           ...+.+.|.++||.+..++.  
T Consensus       263 ~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~~~~g~f~~~~~~~-----------~~~~~~~l~~~gv~v~~~~~~~  327 (354)
T PRK04635        263 ARMKFQVLDLNAQGARLQAALSM----YGGAKVLEGNGNYVLAKFDD-----------VDAVFKALWDAGIVARAYKDPR  327 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----CCCceECCCCCcEEEEECCC-----------HHHHHHHHHHCCEEEEECCCCC
Confidence            222   22333333444444443    34233345568888887621           34577888999999976532  


Q ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          449 YGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       449 ~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ..+++||+.   .+++|++.++++|++-
T Consensus       328 ~~~~lRis~---~~~e~~~~l~~al~~~  352 (354)
T PRK04635        328 LANCIRFSF---SNRAETDKLIGLIRNQ  352 (354)
T ss_pred             CCCeEEEEe---CCHHHHHHHHHHHHHh
Confidence            246899993   4899999999999764

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.89  E-value=2.1e-20  Score=189.45  Aligned_cols=320  Identities=18%  Similarity=0.184  Sum_probs=203.4

Q ss_pred             CCCCHHHHHHHHHHHHhccccccccC-------ChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhh-cCC
Q 011669          114 GHCHPYVVDSIVNQIKRIQHSTVLYL-------NHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLY-TGC  184 (480)
Q Consensus       114 Gh~~p~v~~A~~~~~~~~~~~~~~~~-------~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~-~~~  184 (480)
                      |-.++.+.+++.+.+...+-....+.       .....++++.++++++.+ .+++++++|+++|++.+++.+... .++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g   88 (373)
T cd06453           9 SQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPG   88 (373)
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCC
Confidence            45679999999888765422111111       234567889999998765 568999999999999999876431 145


Q ss_pred             ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccC
Q 011669          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ  264 (480)
Q Consensus       185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~  264 (480)
                      ++|++.++.|.+..........         ..|.....++....  +..|    .+++++.++    +++++|++..++
T Consensus        89 ~~vl~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~~--~~~d----~~~l~~~l~----~~~~~v~~~~~~  149 (373)
T cd06453          89 DEIVTSVMEHHSNIVPWQQLAE---------RTGAKLKVVPVDDD--GQLD----LEALEKLLT----ERTKLVAVTHVS  149 (373)
T ss_pred             CEEEECcchhHHHHHHHHHHHh---------hcCcEEEEeecCCC--CCcC----HHHHHHHhc----CCceEEEEeCcc
Confidence            6788877776543211111100         01222222221111  1112    577877775    267888888888


Q ss_pred             CCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHH
Q 011669          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIA  342 (480)
Q Consensus       265 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~  342 (480)
                      +++|.+.+    +++|.++|++||+++|+|++|+ +|...     ++.....+|++++|  |.+++ .++|+++++++++
T Consensus       150 ~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~~-----~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~  218 (373)
T cd06453         150 NVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHMP-----VDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEELL  218 (373)
T ss_pred             cccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCcee-----eeccccCCCEEEeccccccCC-CCcEEEEEchHHh
Confidence            88998876    8999999999999999999986 33221     22223457898888  99987 6789999999988


Q ss_pred             HhhcCCCccc------------------cC---CCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhc
Q 011669          343 EVLTRRNYFN------------------TF---GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKY  398 (480)
Q Consensus       343 ~~l~~~~~~~------------------t~---~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~  398 (480)
                      +.+.....+.                  .|   ..|..+..+..++++.+.++   ...++.+++.+++++.|+++. .+
T Consensus       219 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~-~~  297 (373)
T cd06453         219 EEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIP-GV  297 (373)
T ss_pred             hcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCC-Ce
Confidence            7766422110                  01   23344555556667766654   344555555566655555431 01


Q ss_pred             CceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc----------CCCEEEEeCCCCCCHHHHHH
Q 011669          399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF----------YGNVFRITPPLCFTKEDADY  468 (480)
Q Consensus       399 ~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~~~iRi~p~~~~t~~~id~  468 (480)
                      ..+......+.++.+.+..         ....++.+.|+++||.+.++..          ..+++|+++...+|++|+|+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~  368 (373)
T cd06453         298 RVYGDAEDRAGVVSFNLEG---------IHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDA  368 (373)
T ss_pred             EEeCCccccCCeEEEEECC---------cCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHH
Confidence            1111222345566666521         1245788899999999876532          14689999999999999999


Q ss_pred             HHHHH
Q 011669          469 LVDVM  473 (480)
Q Consensus       469 ~l~~l  473 (480)
                      ++++|
T Consensus       369 ~~~~l  373 (373)
T cd06453         369 LVEAL  373 (373)
T ss_pred             HHhhC
Confidence            99864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.89  E-value=5.2e-21  Score=192.58  Aligned_cols=317  Identities=16%  Similarity=0.161  Sum_probs=203.4

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y  194 (480)
                      .+++|.+|+.+.+..  +... ...+...++++.+++.++.+ .+.+++++||++|+..+++...  .+++.|++..+++
T Consensus        10 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~--~~g~~vl~~~~~~   84 (356)
T cd06451          10 VPPRVLKAMNRPMLG--HRSP-EFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL--EPGDKVLVGVNGV   84 (356)
T ss_pred             CCHHHHHHhCCCccC--CCCH-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC--CCCCEEEEecCCc
Confidence            468888888653321  1111 12344678999999999763 3468899999999999998653  3567888888777


Q ss_pred             ccccc-cccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          195 HGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       195 hG~~~-~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      ++... ......+.          .+..++...    .+..|    .+++++.++.   .++++|++..+++++|.+.+ 
T Consensus        85 ~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~~----~~~l~~~i~~---~~~~~v~i~~~~~~~G~~~~-  142 (356)
T cd06451          85 FGDRWADMAERYGA----------DVDVVEKPW----GEAVS----PEEIAEALEQ---HDIKAVTLTHNETSTGVLNP-  142 (356)
T ss_pred             hhHHHHHHHHHhCC----------CeEEeecCC----CCCCC----HHHHHHHHhc---cCCCEEEEeccCCCcccccC-
Confidence            65321 11111111          122222211    11223    5677777753   25677777777788898876 


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccccccCHHHHHhhcC--CC
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTR--RN  349 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~--~~  349 (480)
                         +++|.++|+++|+++|+|++|. +|..   .+....++  +|++  +.+|.++++.++|+++.++++++.+..  ..
T Consensus       143 ---~~~i~~~a~~~~~~li~D~~~~-~g~~---~~~~~~~~--~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~  213 (356)
T cd06451         143 ---LEGIGALAKKHDALLIVDAVSS-LGGE---PFRMDEWG--VDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKP  213 (356)
T ss_pred             ---HHHHHHHHHhcCCEEEEeeehh-ccCc---cccccccC--ccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCC
Confidence               9999999999999999999986 5432   22222233  4555  456999987788999999998877652  11


Q ss_pred             --c---------------cccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc-c
Q 011669          350 --Y---------------FNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR-G  408 (480)
Q Consensus       350 --~---------------~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g  408 (480)
                        .               +...+.++..+++..++++.+..+   ...++.+++.+++++.|+++  .+.......+. +
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~  291 (356)
T cd06451         214 KGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL--GLKLLAKPELRSP  291 (356)
T ss_pred             CceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCcccCCC
Confidence              0               111223455566777888776543   45566677777777777764  22222211111 2


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+.++.+..        ......+.+.|.++ ||.+.++..  .+++||+++...+|++|+++++++|+++++
T Consensus       292 ~~~~~~~~~--------~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         292 TVTAVLVPE--------GVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             ceEEEECCC--------CCCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            233443311        11246788899998 999987532  246899999999999999999999999874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.89  E-value=1.2e-20  Score=179.46  Aligned_cols=316  Identities=18%  Similarity=0.218  Sum_probs=225.6

Q ss_pred             CCHHHHHHHHHHHHhccccc-----cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH-HHhhcCCceEEE
Q 011669          116 CHPYVVDSIVNQIKRIQHST-----VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM-ARLYTGCNDIIS  189 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~-----~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~-ar~~~~~~~ii~  189 (480)
                      .||+|.+|+.+.+++.+-..     -.+.+....+|.++|+++..  .+..++.+|..-||+..|.. ++..  .+-+|.
T Consensus       186 ~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHq--K~aALlFsSCfVANDstLftLak~l--pgcei~  261 (570)
T KOG1360|consen  186 RHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQ--KEAALLFSSCFVANDSTLFTLAKKL--PGCEIF  261 (570)
T ss_pred             CChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhc--CcceeeeeeeeeccchHHHHHHHHC--CCcEEe
Confidence            47999999999999864321     13456778899999999984  34566778888899988864 4443  235667


Q ss_pred             EcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcc
Q 011669          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (480)
Q Consensus       190 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  269 (480)
                      .+.+.|......+..++.+.+.+.+                   ||    +++|+++++...+...+.|-.|.+.++.|.
T Consensus       262 SD~gNHASMI~GIrns~v~K~IFrH-------------------ND----~~hL~~lL~~~~~svPKivAFEtVhSM~Ga  318 (570)
T KOG1360|consen  262 SDEGNHASMIQGIRNSRVPKHIFRH-------------------ND----LDHLEQLLQSSPKSVPKIVAFETVHSMDGA  318 (570)
T ss_pred             ccccchHHHHHHhhhcCCcceeecc-------------------CC----HHHHHHHHHhCCCCCCceEEEeeeeccCCC
Confidence            7888888777766666554444332                   45    688999998776667899999999999999


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccCC--Cccee--eecccccc-CccccccccCHHHHH
Q 011669          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGV--VPDIV--TMAKGIGN-GIPLGAVVTTPEIAE  343 (480)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~~--~pDiv--t~sK~~g~-G~pig~v~~~~~~~~  343 (480)
                      +.|    |++|.++++|||++-.+|||+. .|-.|++.-+ -+..|+  ..||+  |++|+||. |   |||..+..+++
T Consensus       319 vcp----leelcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~~LvD  390 (570)
T KOG1360|consen  319 VCP----LEELCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG---GYIAATRKLVD  390 (570)
T ss_pred             cCC----HHHHHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhccccc---ceehhhhhHHH
Confidence            998    9999999999999999999996 5555532222 245566  46777  69999994 4   67999999998


Q ss_pred             hhcCCC--ccccCCCcHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecC
Q 011669          344 VLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD  418 (480)
Q Consensus       344 ~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~  418 (480)
                      .++...  +..|-+-+|..++.|++++++++.++   +...-++..+++++.|.++  .+|.+   .....++-+.+   
T Consensus       391 miRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~--GiPVi---~~pSHIiPv~v---  462 (570)
T KOG1360|consen  391 MIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL--GIPVI---PNPSHIIPVRV---  462 (570)
T ss_pred             HHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc--CCccc---CCCcceeeeec---
Confidence            887643  34566778999999999999987652   2233344445555555544  22322   12222222222   


Q ss_pred             CCcCCCCHHHHHHHHHHHH-HcCceeecc-----CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          419 RQLKTPAKAETLYIMDKMK-EMGVLVGKG-----GFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       419 ~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-----~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                           .+.....++...|. ++||++..-     ......+||.|.-.+|.+.++.+++.+..++.+
T Consensus       463 -----gda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~  524 (570)
T KOG1360|consen  463 -----GDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNE  524 (570)
T ss_pred             -----cCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence                 23344566677665 579998542     122468999999999999999999999988765

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.89  E-value=1.9e-21  Score=201.01  Aligned_cols=350  Identities=11%  Similarity=0.077  Sum_probs=193.2

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHH-HHHHhCC---CCCC--EEEEeCCHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAE-ALASKMP---GNLK--VVFFTNSGTEANEL  173 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e-~L~~~~~---~~~~--~v~f~~sGseA~~~  173 (480)
                      ..+++..|.+.    ...|+++.++.+.+....+.......+...++++ .+.+.+.   ...+  +|++|+|+++|+..
T Consensus        95 ~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~  170 (521)
T TIGR03801        95 DIISYVIDQLG----FDPDAFLYEMCDGIIGDNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCY  170 (521)
T ss_pred             HHHhhcCCCCC----CCCCHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHH
Confidence            34555555443    3456777777776532212112222233444443 2233322   1223  79999999999999


Q ss_pred             HHHHHH---hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCC-----CCCChHHHHHHHHH
Q 011669          174 AIMMAR---LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV-----FGADGEMYAKDVQD  245 (480)
Q Consensus       174 Alk~ar---~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~-----~~~d~~~~~~~le~  245 (480)
                      ++....   ...++++|++.+|+|..+........           .++..++++......     |..|    .+++++
T Consensus       171 ~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~-----------~g~~vv~i~~~~~~~~g~~~~~~d----~~~l~~  235 (521)
T TIGR03801       171 IFDSLKANELLKKGDKIALMTPIFTPYLEIPELPR-----------YDFEVVRIKADEMTEDGTHTWQYP----DKELEK  235 (521)
T ss_pred             HHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhc-----------CCcEEEEeecccccccccccCCCC----HHHHHH
Confidence            887521   23467899999999977554332211           123333322211111     4333    456666


Q ss_pred             HHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh--CCEEEEcccccCccccCCCcccccccCCCcceeeec
Q 011669          246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA  323 (480)
Q Consensus       246 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s  323 (480)
                      +++    .++++|++...+|++|.+ .+++.+++|.++|++|  |+++|+||+|..|.......... ..+...-+.+||
T Consensus       236 ~~~----~~~kai~l~nP~NPTG~v-ls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~-~~~~vI~v~SfS  309 (521)
T TIGR03801       236 LRD----PSIKALFVVNPSNPPSVA-MSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAE-LPYNTIGVYSFS  309 (521)
T ss_pred             hcC----CCCcEEEEeCCCCCCCCC-CCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhh-CCCCEEEEEcch
Confidence            553    356666654445666765 4888999999999987  99999999998774311011111 111222244799


Q ss_pred             cccc-cCccccccccCHH-----HH--------Hhhc------------------------CCCccccCCCcHHHHH--H
Q 011669          324 KGIG-NGIPLGAVVTTPE-----IA--------EVLT------------------------RRNYFNTFGGNPVCTA--A  363 (480)
Q Consensus       324 K~~g-~G~pig~v~~~~~-----~~--------~~l~------------------------~~~~~~t~~~~~~~~a--a  363 (480)
                      |.++ .|||+||++++++     ++        +.+.                        ......|.+.+...+.  +
T Consensus       310 K~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~a  389 (521)
T TIGR03801       310 KYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMA  389 (521)
T ss_pred             hhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence            9998 7999999999865     22        1111                        1112245555555444  2


Q ss_pred             HHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCcee--eEeccceeEEEEEecCCC---cCCCC-----HHHHHHH
Q 011669          364 GHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIG--DVRGRGFLLGVEFVTDRQ---LKTPA-----KAETLYI  432 (480)
Q Consensus       364 a~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~v~g~g~~~~i~~~~~~~---~~~~~-----~~~~~~~  432 (480)
                      ..++...++. +.+.+   ++.+.++++...+.+.++...  .....|.++++++..-..   .....     .....++
T Consensus       390 l~a~~all~~~~~y~~---~~~~~~~~R~~~l~~~Lg~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~  466 (521)
T TIGR03801       390 LFSLFALMDKENAYKA---ETKDICRRREKLLFRGLGLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDV  466 (521)
T ss_pred             HHHHHHHhccchhHHH---HHHHHHHHHHHHHHHhcCCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHH
Confidence            1122222222 23333   333344444444444443321  223445677777742110   00000     0012345


Q ss_pred             HHHH-HHcCceeeccCcCC---CEEEEeCCCC-CCHHHHHHHHHHHHHHHhh
Q 011669          433 MDKM-KEMGVLVGKGGFYG---NVFRITPPLC-FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       433 ~~~l-~~~Gv~v~~~~~~~---~~iRi~p~~~-~t~~~id~~l~~l~~~l~~  479 (480)
                      +..| .+.||.+.||..|+   +++||+  ++ .+++++.++.++|.+.+.+
T Consensus       467 ~~~L~~e~gV~v~PG~~Fg~~~~~vRis--la~l~~~~~~~~~~rl~~~~~~  516 (521)
T TIGR03801       467 LFRLAEETGIVLLPGGGFGGPEWSVRVS--LANLNEYDYAEIGRAIRKILDE  516 (521)
T ss_pred             HHHHHHhCCEEEeCchhcCCCCCeEEEE--ecCCCHHHHHHHHHHHHHHHHH
Confidence            5554 56799999986654   579999  55 6899999999999988754

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK02948 cysteine desulfurase; Provisional

Probab=99.89  E-value=1.2e-20  Score=191.83  Aligned_cols=329  Identities=19%  Similarity=0.148  Sum_probs=205.5

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc-ccc-----cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVL-----YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~-----~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~  173 (480)
                      .|||..+.      |..++.|.+++.+.+...+.. ...     .......++++.++++++.+.++|+|++|++|++..
T Consensus         2 ~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~   75 (381)
T PRK02948          2 IYLDYAAT------TPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYL   75 (381)
T ss_pred             EeccCCCC------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHH
Confidence            47775433      456799999999877653211 111     112456788899999998777899999999999999


Q ss_pred             HHHHHHhh--cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          174 AIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       174 Alk~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ++..+...  .+++.|++....|+........+..          .|+....+|...  .+..|    .+++++.++   
T Consensus        76 ~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~----------~g~~v~~v~~~~--~~~~d----~~~l~~~l~---  136 (381)
T PRK02948         76 AIQSLLNALPQNKKHIITTPMEHASIHSYFQSLES----------QGYTVTEIPVDK--SGLIR----LVDLERAIT---  136 (381)
T ss_pred             HHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHh----------CCCEEEEEeeCC--CCCCC----HHHHHHhcC---
Confidence            99876432  2345555544333332222211110          122222222111  11123    567777664   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccc-c
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIG-N  328 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g-~  328 (480)
                       +++++|+++.+++++|.+.+    +++|.++|+++|+++|+|++|+ ||..+   ...+.++  .|++  +++|.+| .
T Consensus       137 -~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~---~~~~~~~--~d~~~~s~~K~~gp~  205 (381)
T PRK02948        137 -PDTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLP---IDVFEMG--IDSLSVSAHKIYGPK  205 (381)
T ss_pred             -CCCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-ccccc---cCcccCC--CCEEEecHHhcCCCC
Confidence             35678989999999999987    8999999999999999998885 66433   1122333  5555  6779876 2


Q ss_pred             CccccccccCHHH-HHhhcCC----CccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669          329 GIPLGAVVTTPEI-AEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGII  401 (480)
Q Consensus       329 G~pig~v~~~~~~-~~~l~~~----~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~  401 (480)
                      |  +|++++++++ +..+...    .....++.|..+.+++.++|+.+.+  ++..++++++.+++++.|+++  .+. +
T Consensus       206 G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~-v  280 (381)
T PRK02948        206 G--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL--PLP-I  280 (381)
T ss_pred             c--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-E
Confidence            4  6888888764 1111100    0113345678888888888876533  345566677777777776665  111 1


Q ss_pred             eeEecc-----ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---------------------CCCEEEE
Q 011669          402 GDVRGR-----GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---------------------YGNVFRI  455 (480)
Q Consensus       402 ~~v~g~-----g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi  455 (480)
                      . ..+.     ..++.+.+..         ....++...|.++||.++.+..                     ..+++||
T Consensus       281 ~-~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRi  350 (381)
T PRK02948        281 E-VEGHSTSCLPHIIGVTIKG---------IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRF  350 (381)
T ss_pred             E-EeCCCccCcCCEEEEEeCC---------CCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEE
Confidence            1 1111     1122233211         0134566678889999986531                     1368999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          456 TPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++...+|++|+|++++.|++++++
T Consensus       351 s~~~~~t~~di~~l~~~l~~~~~~  374 (381)
T PRK02948        351 SFGQQTTKDQIDTTIHALETIGNQ  374 (381)
T ss_pred             EcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988764

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.88  E-value=2.6e-20  Score=189.41  Aligned_cols=337  Identities=15%  Similarity=0.095  Sum_probs=204.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHhccc------cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCC
Q 011669          111 VCCGHCHPYVVDSIVNQIKRIQH------STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC  184 (480)
Q Consensus       111 ~~lGh~~p~v~~A~~~~~~~~~~------~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~  184 (480)
                      .-+|..++++++|+.+.......      .......+...++++.++++++.  +.++|++||++|+..+++...  .++
T Consensus        27 ~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~--~~~~~~~g~t~a~~~al~~l~--~~g  102 (387)
T PRK09331         27 QRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM--DEARVTHGAREGKFAVMHSLC--KKG  102 (387)
T ss_pred             hcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhc--CCC
Confidence            44678899999999987754222      11123356789999999999964  568899999999999998764  366


Q ss_pred             ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc---CCCceEEEEEc
Q 011669          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG---TSGHVAGFLSE  261 (480)
Q Consensus       185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~---~~~~~a~vi~e  261 (480)
                      ++|++.++++.+.... +...            |+....+|......+..|    .+++++.++..   ..+++++|+++
T Consensus       103 d~Vlv~~~~h~s~~~~-~~~~------------G~~~~~v~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~~~lV~l~  165 (387)
T PRK09331        103 DYVVLDGLAHYTSYVA-AERA------------GLNVREVPKTGYPEYKIT----PEAYAEKIEEVKEETGKPPALALLT  165 (387)
T ss_pred             CEEEECCCchHHHHHH-HHHc------------CCEEEEEeCccCcCCCcC----HHHHHHHHHHhhhccCCCCEEEEEE
Confidence            7788877665543322 2221            233222222100112223    56777777532   11368899999


Q ss_pred             ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHH
Q 011669          262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEI  341 (480)
Q Consensus       262 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~  341 (480)
                      .+++++|.+.+    +++|.++|++||+++|+|++|+ +|..+   +....+++...+.+++|+++++.++|++++++++
T Consensus       166 ~~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~---~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~  237 (387)
T PRK09331        166 HVDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMP---VDGKKLGADFIVGSGHKSMAASAPSGVLATTEEY  237 (387)
T ss_pred             CCCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcC---CCHHHcCCCEEEeeCcccccCCCCEEEEEECHHH
Confidence            88888998877    9999999999999999999996 44322   1122334444445678999987899999999998


Q ss_pred             HHhhcCCCccc------cCC--CcHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669          342 AEVLTRRNYFN------TFG--GNPVCTAAGHAVLKVIQKD-KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (480)
Q Consensus       342 ~~~l~~~~~~~------t~~--~~~~~~aaa~a~L~~i~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  412 (480)
                      ++.+.......      .++  .++...++.+++++.+.+. +..++..+..+++++.|.++. .+.....-.....++.
T Consensus       238 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~-g~~~~~~~~~~~~i~~  316 (387)
T PRK09331        238 ADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIE-GFKQLGEKPRNHDLMK  316 (387)
T ss_pred             HhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEeccCcCcCCeEE
Confidence            88765432100      011  2233444455566544332 233344555666666666541 1111110011223333


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++...-.............+.+.|+++||...+.+ .+..+|+.. +.+|++|++.++++|++++++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~-~~~i~ri~~-~g~t~~di~~l~~aL~~i~~~  381 (387)
T PRK09331        317 FETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPG-ATKEFKLST-YGLTWEQVEYVADAFKEIAEK  381 (387)
T ss_pred             EeCCchhHHhhhccccchhHHHHHHHcCceEEccC-CceEEEEEe-ccCCHHHHHHHHHHHHHHHHh
Confidence            33210000000001123568889999999854332 245567765 458999999999999998764

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.88  E-value=4.9e-20  Score=188.28  Aligned_cols=326  Identities=17%  Similarity=0.175  Sum_probs=201.4

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-cccccC-----ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYL-----NHAIADFAEALASKMPGNLKVVFFTNSGTEANE  172 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~~~~-----~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~  172 (480)
                      ..|||..+.      |-.++.+.+++.+.+..... ....|.     .+...++++.++++++.+.++|++++|+++++.
T Consensus        18 ~~yl~~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~   91 (397)
T TIGR01976        18 RVFFDNPAG------TQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTF   91 (397)
T ss_pred             eEEecCCcc------CCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHH
Confidence            488886433      34678999999998865321 111122     234678999999999866667999999999998


Q ss_pred             HHHHHHHh-hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          173 LAIMMARL-YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       173 ~Alk~ar~-~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      .++..... ..++++|++.++.|++..........         ..|+....++.... .+..|    .+++++.++   
T Consensus        92 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~---------~~g~~~~~~~~~~~-~~~~~----~~~l~~~i~---  154 (397)
T TIGR01976        92 LLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAE---------RAGAKVKWARVDEA-TGELH----PDDLASLLS---  154 (397)
T ss_pred             HHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHH---------hcCCEEEEEecccc-CCCcC----HHHHHHhcC---
Confidence            77765432 34567888888777654322111100         01222222221110 01122    567777774   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccC
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG  329 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G  329 (480)
                       +++++|+++.+++++|.+.+    +++|.++|++||+++|+||+|. .|. .  .....  +..+|++  +++|.+  |
T Consensus       155 -~~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~-~--~~~~~--~~~~d~~~~s~~K~~--g  221 (397)
T TIGR01976       155 -PRTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-APH-G--LIDVQ--ATGADFLTCSAYKFF--G  221 (397)
T ss_pred             -CCceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-ccc-c--CCCHH--HcCCCEEEEechhhc--C
Confidence             36788888888888998876    9999999999999999999985 331 1  11122  2346766  566987  4


Q ss_pred             ccccccccCHHHHHhhcCCCccccC----------CCcHHHHHHHHHHHHHhhhhH-----------------HHHHHHH
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTF----------GGNPVCTAAGHAVLKVIQKDK-----------------LQNNAHV  382 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~----------~~~~~~~aaa~a~L~~i~~~~-----------------~~~~~~~  382 (480)
                      .|+|++++++++++.+.+......+          ..|....++..++++.+.+.+                 ..++..+
T Consensus       222 ~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  301 (397)
T TIGR01976       222 PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENR  301 (397)
T ss_pred             CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHH
Confidence            5789999999988777643211111          123344555556666654321                 2333444


Q ss_pred             HHHHHHHHHHHhHHhcCceeeE-----eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---------
Q 011669          383 VGSYLKERLTALKDKYGIIGDV-----RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---------  448 (480)
Q Consensus       383 ~~~~l~~~L~~l~~~~~~~~~v-----~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------  448 (480)
                      +.+++++.|+++    +.+..+     ...+.++.+.+..         .....+.+.|.++||.+..+..         
T Consensus       302 l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~  368 (397)
T TIGR01976       302 LAEYLLVGLSDL----PGVTLYGVARLAARVPTVSFTVHG---------LPPQRVVRRLADQGIDAWAGHFYAVRLLRRL  368 (397)
T ss_pred             HHHHHHHHHhcC----CCEEEeCCCCccCCCceEEEEeCC---------cCHHHHHHHHHHCCeEEEeCccchHHHHHHh
Confidence            555555555443    322211     1134444444311         1135688889999999986521         


Q ss_pred             ----CCCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          449 ----YGNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       449 ----~~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                          ..+++||++...+|++|+++++++|
T Consensus       369 ~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       369 GLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             CCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence                2368999999999999999999864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.88  E-value=1e-20  Score=188.95  Aligned_cols=322  Identities=20%  Similarity=0.129  Sum_probs=199.6

Q ss_pred             eccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc
Q 011669          103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT  182 (480)
Q Consensus       103 D~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~  182 (480)
                      ||++..   .+| .+|++.+++.+.+...   ...++.+...++++.++++++  .+.++++++|++|+..+++...  .
T Consensus         1 ~~~~~~---~~~-~~~~v~~a~~~~~~~~---~~~~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~--~   69 (338)
T cd06502           1 DFRSDT---VTG-PTPEMLEAMAAANVGD---DVYGEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHT--Q   69 (338)
T ss_pred             Cccccc---CCC-CCHHHHHHHHhcccCC---cccCCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhc--C
Confidence            455443   345 7899999998765321   123456788999999999987  4678899999999999998654  3


Q ss_pred             CCceEEEEcCCcccccccc--cccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC---CCceEE
Q 011669          183 GCNDIISLRNAYHGNAAGT--MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT---SGHVAG  257 (480)
Q Consensus       183 ~~~~ii~~~~~yhG~~~~~--~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~---~~~~a~  257 (480)
                      +++.|++..++|.......  ...            .|+....++..   .+..|    .++++++++...   ..++++
T Consensus        70 ~gd~v~~~~~~~~~~~~~~~~~~~------------~g~~~~~v~~~---~~~~d----~~~l~~~i~~~~~~~~~~~~~  130 (338)
T cd06502          70 PGGSVICHETAHIYTDEAGAPEFL------------SGVKLLPVPGE---NGKLT----PEDLEAAIRPRDDIHFPPPSL  130 (338)
T ss_pred             CCCeEEEecCcceeeecCCcHHHH------------cCceEEeecCC---CCcCC----HHHHHHHhhccCCCcCCcceE
Confidence            5677777666553222111  011            13333333221   12223    567777775311   125677


Q ss_pred             EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcc--ccCCCcccccccCCCccee--eeccccccCcccc
Q 011669          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA--RTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLG  333 (480)
Q Consensus       258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg--r~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig  333 (480)
                      |++++.++.||..  +.+.+++|.++|++||+++|+||+|..+.  ..| .  ........+|++  +++|.++.  +.|
T Consensus       131 v~l~~p~n~g~~~--~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~-~--~~~~~~~~~d~~~~s~sK~~~~--~~g  203 (338)
T cd06502         131 VSLENTTEGGTVY--PLDELKAISALAKENGLPLHLDGARLANAAAALG-V--ALKTYKSGVDSVSFCLSKGGGA--PVG  203 (338)
T ss_pred             EEEEeecCCcccc--CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcC-C--CHHHHHhcCCEEEEeccccCCC--ccc
Confidence            7777666665533  77789999999999999999999874221  122 1  111112234544  67899873  225


Q ss_pred             c-cccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecccee
Q 011669          334 A-VVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (480)
Q Consensus       334 ~-v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~  410 (480)
                      + +++++++++.+....  ++++++.+++.+++++++|+.-...+..++..++.+++.+.|+++    +. ......+.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~~~~  278 (338)
T cd06502         204 AVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL----GG-LESEVQTNI  278 (338)
T ss_pred             eEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc----CC-CcccccCCe
Confidence            4 557888888775432  234566677777888877763112334566666677777777664    22 112233445


Q ss_pred             EEEEEecCCCcCCCCHHHHHHHHHHHH---HcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          411 LGVEFVTDRQLKTPAKAETLYIMDKMK---EMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~---~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      ..+.+..       .......+.+.+.   ++|+++.+.+  .+++||+|++.+|++|++++++++++
T Consensus       279 ~~v~~~~-------~~~~~~~l~~~l~~~~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         279 VLLDPVE-------ANAVFVELSKEAIERRGEGVLFYAWG--EGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             EEEecCC-------ccHHHHHHHHHHHHhhhCCEEEEecC--CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            4444311       1112233444443   7899998764  37899999999999999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PLN02397 aspartate transaminase

Probab=99.88  E-value=1.1e-20  Score=194.10  Aligned_cols=335  Identities=16%  Similarity=0.109  Sum_probs=185.5

Q ss_pred             EEeccCCc-ccccCCCCCHHHHHHHHHHHHhc---cccccccCChHHHHHHHHHHHhCCCC------CCEE--EEeCCHH
Q 011669          101 YLDAFGGI-ATVCCGHCHPYVVDSIVNQIKRI---QHSTVLYLNHAIADFAEALASKMPGN------LKVV--FFTNSGT  168 (480)
Q Consensus       101 ylD~~~g~-~~~~lGh~~p~v~~A~~~~~~~~---~~~~~~~~~~~~~~l~e~L~~~~~~~------~~~v--~f~~sGs  168 (480)
                      .|++..|. .+.   +.+|.+.+++.+.....   .......+.....+|++.+++++...      .++|  ..+.+|+
T Consensus        50 ~l~l~~g~~p~~---~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~  126 (423)
T PLN02397         50 KLNLGVGAYRTE---EGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGT  126 (423)
T ss_pred             eEecccceeeCC---CCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccch
Confidence            46666653 332   34455555555543221   11111223455667777777765211      1233  1134444


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      .+.++++.+.....+++.|++.+|+|.++...+....             ...+++|......|+.|    .+.+++.+.
T Consensus       127 Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g-------------~~~~~v~l~~~~~~~~d----~~~l~~~l~  189 (423)
T PLN02397        127 GSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAG-------------VPVRTYRYYDPKTRGLD----FDGLLEDLK  189 (423)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcC-------------CeEEEeecccCcCCccC----HHHHHHHHH
Confidence            4444333333333377899999999977655544332             22222221101113334    455555554


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--Cccc---ccccC-CCcceeee
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWG---FEAHG-VVPDIVTM  322 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~~~~---~~~~~-~~pDivt~  322 (480)
                      .. ..++.++++...+|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+.  ....   +...+ ...-+.+|
T Consensus       190 ~~-~~~~~~i~~~~P~NPTG~v~-s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~Sf  267 (423)
T PLN02397        190 AA-PDGSFVLLHACAHNPTGVDP-TPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSY  267 (423)
T ss_pred             hC-CCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEEC
Confidence            32 23566777666778888764 888999999999999999999999999965330  1111   11111 12223379


Q ss_pred             ccccc-cCccccccc---cCHHHHHhhc----CCCccccCCCcHHHHHHHHHHHHHhh-hhHH-------HHHHHHHHHH
Q 011669          323 AKGIG-NGIPLGAVV---TTPEIAEVLT----RRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKL-------QNNAHVVGSY  386 (480)
Q Consensus       323 sK~~g-~G~pig~v~---~~~~~~~~l~----~~~~~~t~~~~~~~~aaa~a~L~~i~-~~~~-------~~~~~~~~~~  386 (480)
                      ||.++ .|||+||++   .++++++.+.    .......++.+.+++.++.++|+.-. .+.+       .+++++..+.
T Consensus       268 SK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~  347 (423)
T PLN02397        268 AKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQK  347 (423)
T ss_pred             cccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 799999984   3566544332    22222334556677777777664211 0122       2333444444


Q ss_pred             HHHHHHHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcCCCEEEEeCCCCCCHH
Q 011669          387 LKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFYGNVFRITPPLCFTKE  464 (480)
Q Consensus       387 l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~iRi~p~~~~t~~  464 (480)
                      +.+.|+++.... .+..+ +..|+++|+.+.             ..+++.| .+.||.+.++    +  ||+.. +.+++
T Consensus       348 l~~~L~~~~~~~-~~~~~~p~gg~fl~~~l~-------------~~~~~~Ll~~~~V~v~~~----~--Ri~~~-~~~~~  406 (423)
T PLN02397        348 LYDALEARGSPG-DWSHITKQIGMFSFTGLN-------------KEQVDRMTKEYHIYMTRD----G--RISMA-GLSSK  406 (423)
T ss_pred             HHHHHHhcCCCC-CCCcccCCceEEEecCCC-------------HHHHHHHHHhCCEEECCC----C--eEEEe-eCCHH
Confidence            444444431000 12222 344566677651             2355555 5679999643    2  88842 38999


Q ss_pred             HHHHHHHHHHHHHh
Q 011669          465 DADYLVDVMDYSLS  478 (480)
Q Consensus       465 ~id~~l~~l~~~l~  478 (480)
                      .+++++++|++++.
T Consensus       407 ~i~~~~~~i~~~~~  420 (423)
T PLN02397        407 NVPYLADAIHAVVT  420 (423)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999875

>PRK08637 hypothetical protein; Provisional

Probab=99.88  E-value=2.1e-20  Score=190.36  Aligned_cols=304  Identities=13%  Similarity=0.097  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHHhC----C----CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          142 AIADFAEALASKM----P----GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       142 ~~~~l~e~L~~~~----~----~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ...+|++.+++.+    +    .+.++|++|+|+++|+..++++...  +++.|++.+|+|..+........        
T Consensus        45 G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~--------  114 (388)
T PRK08637         45 GIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVD--QGDTVLLPDHNWGNYKLTFNTRR--------  114 (388)
T ss_pred             CCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHhc--------
Confidence            3455555555443    1    1235789999999999998886553  67889999999977665322221        


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH-----hC
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-----AG  288 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-----~g  288 (480)
                          |...+.+|... ..++-|    ++++++.++...++...++++...+|++|.+ .+++.+++|.++|++     ||
T Consensus       115 ----g~~vv~v~~~~-~~~~~d----~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~-~s~~~~~~l~~~~~~~~~~~~~  184 (388)
T PRK08637        115 ----GAEIVTYPIFD-EDGGFD----TDALKEALQAAYNKGKVIVILNFPNNPTGYT-PTEKEATAIVEAIKELADAGTK  184 (388)
T ss_pred             ----CCEEEEecccC-CCCcCC----HHHHHHHHHhhccCCCEEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHHHhcCCc
Confidence                22233332210 011112    5677777652112233445454457777765 588999999999886     99


Q ss_pred             CEEEEcccccCccccCCCccc-cc-ccCCCcc---ee--eeccccc-cCccccccccC------HHHHHhhcCCC----c
Q 011669          289 GLCIADEVQAGFARTGSHFWG-FE-AHGVVPD---IV--TMAKGIG-NGIPLGAVVTT------PEIAEVLTRRN----Y  350 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~-~~-~~~~~pD---iv--t~sK~~g-~G~pig~v~~~------~~~~~~l~~~~----~  350 (480)
                      +++|+||+|.+|-+.+...-. +. ..+...+   +.  ++||.++ .|+|+||++.+      +++++.+....    .
T Consensus       185 ~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~  264 (388)
T PRK08637        185 VVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIR  264 (388)
T ss_pred             EEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhh
Confidence            999999999988655521111 11 1122223   22  7899987 79999999854      67776664311    1


Q ss_pred             cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---HhHHhcC---ceeeEe-ccceeEEEEEecCCCcCC
Q 011669          351 FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT---ALKDKYG---IIGDVR-GRGFLLGVEFVTDRQLKT  423 (480)
Q Consensus       351 ~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~---~l~~~~~---~~~~v~-g~g~~~~i~~~~~~~~~~  423 (480)
                      ...++.|.++++++.+.|+   +..+.+++++..+.++++..   +....++   .+...+ ..|+++|+.+.       
T Consensus       265 ~~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~-------  334 (388)
T PRK08637        265 SNISNGPHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLK-------  334 (388)
T ss_pred             cccCCCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCC-------
Confidence            1334678889998888774   34455555554444444432   3332331   122223 45778888772       


Q ss_pred             CCHHHHHHHHHHHH-HcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          424 PAKAETLYIMDKMK-EMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       424 ~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                        .....++++.|+ ++||.+...+  .+++||+... .+++++++++++|.++++++
T Consensus       335 --~~~~~~l~~~l~~~~gv~~~~~~--~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        335 --GVDAEELRVHLLEKYGIGTIALN--ETDLRIAFSC-VEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             --hHHHHHHHHHHhhhcceEEEecc--CCceEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence              123466788875 6799887543  5689999653 68999999999999998753

>PRK10534 L-threonine aldolase; Provisional

Probab=99.87  E-value=1.2e-20  Score=188.08  Aligned_cols=321  Identities=17%  Similarity=0.151  Sum_probs=198.3

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar  179 (480)
                      .|||.++..+   | .+|.+.+|+.+.....    ..| +.+...+|.++|+++++  .+.+++++||++++..++....
T Consensus         1 ~~~~~~~~~~---~-p~~~~~~a~~~~~~~~----~~Y~~~~~~~~L~~~la~~~g--~~~~~v~~~g~~a~~~~l~~~~   70 (333)
T PRK10534          1 MIDLRSDTVT---R-PSRAMLEAMMAAPVGD----DVYGDDPTVNALQDYAAELSG--KEAALFLPTGTQANLVALLSHC   70 (333)
T ss_pred             CcccccccCC---C-CCHHHHHHHHhccCCC----cccCCCHHHHHHHHHHHHHhC--CCeEEEeCchHHHHHHHHHHhc
Confidence            3788877654   4 7899999987644332    345 68889999999999985  4556799999999988887543


Q ss_pred             hhcCCceEEEEcCCccc-ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCceE
Q 011669          180 LYTGCNDIISLRNAYHG-NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVA  256 (480)
Q Consensus       180 ~~~~~~~ii~~~~~yhG-~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~a  256 (480)
                        .++++|++..++|.. +........+           +...+.++..  ..|..|    .+++++.+....  ..+++
T Consensus        71 --~~gd~vi~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~d----~~~l~~~i~~~~~~~~~~~  131 (333)
T PRK10534         71 --ERGEEYIVGQAAHNYLYEAGGAAVLG-----------SIQPQPIDAA--ADGTLP----LDKVAAKIKPDDIHFARTR  131 (333)
T ss_pred             --CCCCeeEEechhhhhHhcCCchHHhc-----------CceEEeecCC--CCCCCC----HHHHHHhhcccCcCcccce
Confidence              255777776655531 1111001110           1222222211  123233    566777664210  01456


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcccc---CCCcccccccCCCc-ceeeeccccccCccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART---GSHFWGFEAHGVVP-DIVTMAKGIGNGIPL  332 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~---G~~~~~~~~~~~~p-Divt~sK~~g~G~pi  332 (480)
                      +|+++.++  +|.+. +.+.+++|.++|++||+++|+||+|. |+..   + .... ......+ -+++|||+++.  ++
T Consensus       132 lv~l~np~--~G~v~-~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~-~~~~-~~~~~~~~~~~s~SK~~~~--~~  203 (333)
T PRK10534        132 LLSLENTH--NGKVL-PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYG-CELK-EITQYCDSFTICLSKGLGT--PV  203 (333)
T ss_pred             EEEEecCC--CCeec-CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcC-CCHH-HHHhcCCEEEEEeEcCCCC--cc
Confidence            66666322  47664 77788999999999999999999986 4321   2 1110 0001111 24589998764  57


Q ss_pred             c-ccccCHHHHHhhcCCCccc--cCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccce
Q 011669          333 G-AVVTTPEIAEVLTRRNYFN--TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF  409 (480)
Q Consensus       333 g-~v~~~~~~~~~l~~~~~~~--t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  409 (480)
                      | |+++++++++.+.......  .++.+.++++++.++|+..  ....++..+.++++.+.|+++    ++ ....+.+.
T Consensus       204 G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~~----g~-~~~~~~~n  276 (333)
T PRK10534        204 GSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLREA----GA-DVMRQDTN  276 (333)
T ss_pred             cceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhC----CC-ccCCCCce
Confidence            8 5888999988876533211  2233456677777777532  222333334455666666654    32 22344677


Q ss_pred             eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      |+++.+..         .....+.+.|+++||++.++.    .+|+...+.+|++++++++++|++.+.
T Consensus       277 fv~~~~~~---------~~~~~~~~~l~~~gi~v~~~~----~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        277 MLFVRVGE---------EQAAALGEYMRERNVLINASP----IVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             EEEEECCc---------hhHHHHHHHHHHcCeeecCCc----eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            88776621         124567888999999998753    578876556899999999999998765

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.87  E-value=3.1e-19  Score=182.76  Aligned_cols=332  Identities=17%  Similarity=0.147  Sum_probs=210.7

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc---c----CChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL---Y----LNHAIADFAEALASKMPGN-LKVVFFTNSGTEA  170 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~---~----~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA  170 (480)
                      ..|||..+.      |-.++.|.+++.+.+.........   +    ......++++.++++++.+ .++|+|++|++++
T Consensus        19 ~~yld~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~   92 (403)
T TIGR01979        19 LVYLDSAAT------SQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTES   92 (403)
T ss_pred             eEEEeCccc------cCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHH
Confidence            368886432      445788999998876543211111   1    1234568889999999865 5689999999999


Q ss_pred             HHHHHHHHH--hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          171 NELAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       171 ~~~Alk~ar--~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +..++..+.  ...+++.|++.++.|++..........         ..|+....++....  +..|    .+++++.++
T Consensus        93 l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~---------~~g~~~~~v~~~~~--~~~~----~~~l~~~i~  157 (403)
T TIGR01979        93 INLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAE---------RTGATLKFIPLDDD--GTLD----LDDLEKLLT  157 (403)
T ss_pred             HHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHH---------hcCcEEEEEecCCC--CCCC----HHHHHHHhc
Confidence            998887642  124567888887777653322111110         01332222221111  1112    567777774


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eecccc
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGI  326 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~  326 (480)
                          +++++|++..+++.+|.+.+    +++|.++|++||+++|+|++|. +|..   .  ++.....+|++  +++|.+
T Consensus       158 ----~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~---~--~~~~~~~~d~~~~s~~K~~  223 (403)
T TIGR01979       158 ----EKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM---P--VDVQALDCDFYVFSGHKMY  223 (403)
T ss_pred             ----cCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc---c--cCccccCCCEEEEeccccc
Confidence                36788888888888998887    9999999999999999999996 3321   1  12222346776  456977


Q ss_pred             ccCccccccccCHHHHHhhcCCCcc-----------cc-------C---CCcHHHHHHHHHHHHHhhh---hHHHHHHHH
Q 011669          327 GNGIPLGAVVTTPEIAEVLTRRNYF-----------NT-------F---GGNPVCTAAGHAVLKVIQK---DKLQNNAHV  382 (480)
Q Consensus       327 g~G~pig~v~~~~~~~~~l~~~~~~-----------~t-------~---~~~~~~~aaa~a~L~~i~~---~~~~~~~~~  382 (480)
                      | +..+|++++++++.+.+.+...+           ..       |   ..+..+.++..++++.+.+   +.+.++..+
T Consensus       224 g-p~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~  302 (403)
T TIGR01979       224 G-PTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHE  302 (403)
T ss_pred             C-CCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            5 33478999999887766431110           00       1   2344556666777776654   345666677


Q ss_pred             HHHHHHHHHHHhHHhcCceeeEe-----ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---------
Q 011669          383 VGSYLKERLTALKDKYGIIGDVR-----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---------  448 (480)
Q Consensus       383 ~~~~l~~~L~~l~~~~~~~~~v~-----g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------  448 (480)
                      +.+++++.|+++    +.+..+.     .++.++.+.+...         ...++.+.|.++||.+.++..         
T Consensus       303 l~~~l~~~l~~~----~g~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~  369 (403)
T TIGR01979       303 LTAYALERLGEI----PGLRIYGPRDAEDRGGIISFNVEGV---------HPHDVGTILDEEGIAVRSGHHCAQPLMRRF  369 (403)
T ss_pred             HHHHHHHHHhcC----CCEEEeCCCCccccCceEEEEeCCc---------CHHHHHHHHhhCCEEEcchhhhhHHHHHHh
Confidence            777776666554    2222111     1255666665211         134577888999999976421         


Q ss_pred             -CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          449 -YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       449 -~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       ..+++||+++..+|++|+++++++|+++++.
T Consensus       370 ~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~  401 (403)
T TIGR01979       370 GVPATCRASFYIYNTEEDIDALVEALKKVRKF  401 (403)
T ss_pred             CCCCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence             1368999999999999999999999988765

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.1e-19  Score=181.60  Aligned_cols=332  Identities=19%  Similarity=0.191  Sum_probs=227.2

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc---c----cccccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---H----STVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEA  170 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~----~~~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA  170 (480)
                      -.|+|..++      +..+..|.+++.+......   |    ..........++.+++++++++.+ .++|+||.+.|+|
T Consensus        23 ~vylD~aa~------~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a   96 (405)
T COG0520          23 LVYLDNAAT------SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA   96 (405)
T ss_pred             eEEecCccc------ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence            468887654      3578899999998776431   2    111222446688999999999877 4889999999999


Q ss_pred             HHHHHHHHH-hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          171 NELAIMMAR-LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       171 ~~~Alk~ar-~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      +........ ...++++||+.+--+|........+...         .|......|....+.+  +    .++++++++ 
T Consensus        97 ln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~---------~Ga~v~~i~~~~~g~~--~----~~~~~~~i~-  160 (405)
T COG0520          97 LNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKR---------TGAKVRVIPLDDDGLL--D----LDALEKLIT-  160 (405)
T ss_pred             HHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHh---------cCcEEEEEecCCCCCc--C----HHHHHHhcC-
Confidence            999888542 2335689999988888776655554421         1333322222111111  1    566777663 


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g  327 (480)
                         +++++|.+..+.+.+|.+.|    +++|.++|+++|+++++|-+|+ ++.     ..++......|++.||  |++.
T Consensus       161 ---~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h-----~~idv~~l~~Df~afsgHKwl~  227 (405)
T COG0520         161 ---PKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AGH-----LPIDVQELGCDFLAFSGHKWLL  227 (405)
T ss_pred             ---CCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-cCc-----cCCCchhcCCCEEEEccccccc
Confidence               58999999999999999998    9999999999999999999997 332     2245556678999998  8887


Q ss_pred             cCccccccccCHHHHHhhcCCCcc------------ccC----------CCcHHHHHHHHHHHHHhhh---hHHHHHHHH
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRNYF------------NTF----------GGNPVCTAAGHAVLKVIQK---DKLQNNAHV  382 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~~~------------~t~----------~~~~~~~aaa~a~L~~i~~---~~~~~~~~~  382 (480)
                      |.-.+|.+.+++++.+.+.+...+            .++          ..|..+..+..++++.+.+   +++.++.++
T Consensus       228 gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~  307 (405)
T COG0520         228 GPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERE  307 (405)
T ss_pred             CCCceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Confidence            767789999999999887542111            111          1133334444466666554   345566666


Q ss_pred             HHHHHHHHHHHhHHhcCceeeEe----ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---------
Q 011669          383 VGSYLKERLTALKDKYGIIGDVR----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---------  449 (480)
Q Consensus       383 ~~~~l~~~L~~l~~~~~~~~~v~----g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------  449 (480)
                      +.+++.++|+++    +.+.-..    .++.++.+.+...         ....+...|.++||.++.+...         
T Consensus       308 L~~~~~~~L~~~----~~v~i~g~~~~~r~~~vsF~v~~~---------~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~  374 (405)
T COG0520         308 LTEYLLEGLSEL----PGVEIYGPPDADRGGIVSFNVKGI---------HPHDVATLLDEKGIAVRAGHHCAQPLHRLLG  374 (405)
T ss_pred             HHHHHHHHHhcC----CCeEEecCCcccCceEEEEEeCCC---------CHHHHHHHHHhCCeEEEeccccccHHHHhcC
Confidence            666666666655    3222111    2455555554221         2467899999999888776211         


Q ss_pred             -CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          450 -GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       450 -~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                       ...+|+++.+..|++|||+++++|+++.+
T Consensus       375 ~~~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         375 VDATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             CCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence             12399999999999999999999998763

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.87  E-value=1.4e-19  Score=186.57  Aligned_cols=336  Identities=15%  Similarity=0.137  Sum_probs=211.4

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc---ccccC----ChHHHHHHHHHHHhCCCC-CCEEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS---TVLYL----NHAIADFAEALASKMPGN-LKVVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~---~~~~~----~~~~~~l~e~L~~~~~~~-~~~v~f~~sGse  169 (480)
                      +..|||..+.      |-.++.|.+++.+.+.+....   ...+.    .....++++.|+++++.. .++|+|++|+|+
T Consensus        32 ~~iyLd~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  105 (424)
T PLN02855         32 KLVYLDNAAT------SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATE  105 (424)
T ss_pred             CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHH
Confidence            3578886332      345688999998877654211   11111    233568889999999864 468999999999


Q ss_pred             HHHHHHHHHH--hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          170 ANELAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       170 A~~~Alk~ar--~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++..+++...  ...+++.|++.+..|++..........         ..|+....++....  ...|    .+++++.+
T Consensus       106 al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~---------~~g~~v~~v~~~~~--~~~~----~~~l~~~i  170 (424)
T PLN02855        106 AINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQ---------KTGAVLKFVGLTPD--EVLD----VEQLKELL  170 (424)
T ss_pred             HHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHH---------HcCCEEEEEecCCC--CCcC----HHHHHHHh
Confidence            9999887531  234567888888777653322211110         01222222221111  1112    56777777


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccc
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKG  325 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~  325 (480)
                      +    .++++|++..+++++|.+.+    +++|.++|+++|+++|+|++|. +|...     ++.....+|++  ++.|.
T Consensus       171 ~----~~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~~-----~~~~~~~~d~~~~s~~K~  236 (424)
T PLN02855        171 S----EKTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHMP-----VDVQTLGADFLVASSHKM  236 (424)
T ss_pred             c----cCceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCcC-----CCchhcCCCEEEeecccc
Confidence            4    26788899999999999987    8999999999999999999995 44321     22223346776  56794


Q ss_pred             cccCccccccccCHHHHHhhcCCCcc--------------------ccC-CCcHHHHHHHHHHHHHhhh---hHHHHHHH
Q 011669          326 IGNGIPLGAVVTTPEIAEVLTRRNYF--------------------NTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAH  381 (480)
Q Consensus       326 ~g~G~pig~v~~~~~~~~~l~~~~~~--------------------~t~-~~~~~~~aaa~a~L~~i~~---~~~~~~~~  381 (480)
                      +| .-++|++++++++++.+.+...+                    ... ..|..+.++..++++.+.+   ++..++..
T Consensus       237 ~g-p~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~  315 (424)
T PLN02855        237 CG-PTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEV  315 (424)
T ss_pred             cC-CCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            43 33589999999988776532100                    001 1344555566677776654   34556666


Q ss_pred             HHHHHHHHHHHHhHHhcCceee----EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCc--------
Q 011669          382 VVGSYLKERLTALKDKYGIIGD----VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGF--------  448 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~~~~~~~~----v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--------  448 (480)
                      ++.+++++.|+++. ....+..    ...++.++.+.+...         ....+.+.|.++ ||.++.+..        
T Consensus       316 ~l~~~l~~~L~~~~-g~~i~~~~~~~~~~r~~~v~~~~~~~---------~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~  385 (424)
T PLN02855        316 ELGTYLYEKLSSVP-GVRIYGPKPSEGVGRAALCAFNVEGI---------HPTDLSTFLDQQHGVAIRSGHHCAQPLHRY  385 (424)
T ss_pred             HHHHHHHHHHhcCC-CEEEeCCCcccccCcccEEEEEECCc---------CHHHHHHHhcccCCEEEechhhhhHHHHHH
Confidence            77777777665541 1111111    112244555555211         135688888877 999886431        


Q ss_pred             --CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          449 --YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       449 --~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                        ..+.+|+++++..|++||+.++++|+++++.
T Consensus       386 ~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~  418 (424)
T PLN02855        386 LGVNASARASLYFYNTKEEVDAFIHALKDTIAF  418 (424)
T ss_pred             hCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence              1357999999999999999999999998764

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.87  E-value=4.2e-19  Score=179.87  Aligned_cols=317  Identities=19%  Similarity=0.155  Sum_probs=198.2

Q ss_pred             CCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh----cCCceEEE
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY----TGCNDIIS  189 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~----~~~~~ii~  189 (480)
                      .+|.+.+++.+.+.........++  .....+++++|+++++.+.+.+++++||++++..++..++..    .+++.|++
T Consensus        32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~  111 (373)
T TIGR03812        32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIV  111 (373)
T ss_pred             chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence            568888888776554322122233  244578999999999866567889999999999998876532    23467888


Q ss_pred             EcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcc
Q 011669          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (480)
Q Consensus       190 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  269 (480)
                      .+++|+++...+ ...            |+....++...  .+..|    .+++++.++.   +.++.+++.| ++++|.
T Consensus       112 ~~~~h~~~~~~~-~~~------------G~~~~~v~~~~--~~~~d----~~~l~~~l~~---~~~~vv~~~~-~~~tG~  168 (373)
T TIGR03812       112 PESAHFSFEKAA-EML------------GLELRYAPLDE--DYTVD----VKDVEDLIDD---NTIGIVGIAG-TTELGQ  168 (373)
T ss_pred             CCcchHHHHHHH-HHc------------CCeEEEEeeCC--CCCcC----HHHHHHHHhh---CcEEEEEECC-CCCCCc
Confidence            887776543221 111            22222222111  12123    5778777753   2345666665 567788


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEcccccCcccc----CCCcccccccCCCcceeeec--cccccCccccccc-cCHHHH
Q 011669          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFART----GSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVV-TTPEIA  342 (480)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~----G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~-~~~~~~  342 (480)
                      +.+    +++|.++|++||+++|+|++|.++-..    |......+..-...|.++++  |...++.|.|+++ .++++.
T Consensus       169 ~~~----~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~  244 (373)
T TIGR03812       169 IDD----IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYL  244 (373)
T ss_pred             cCC----HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHH
Confidence            766    999999999999999999999754210    00000111111134555544  7333567888665 577777


Q ss_pred             HhhcCCCcc--cc------CCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeE
Q 011669          343 EVLTRRNYF--NT------FGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (480)
Q Consensus       343 ~~l~~~~~~--~t------~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  411 (480)
                      +.+......  ..      ...++..++++.++|+.+.++   +..++..++.++++++|+++    +......+...++
T Consensus       245 ~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~v  320 (373)
T TIGR03812       245 KYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI----GFEPVIEPVLNIV  320 (373)
T ss_pred             hhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEcCCCceEE
Confidence            766422111  10      123456777788888877554   45677777888888877775    2211122333344


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      .+.+        +.   ...+.+.|.++||++..+. ..+++||+++..+|++|+|.++++|++
T Consensus       321 ~~~~--------~~---~~~v~~~L~~~gi~v~~~~-~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       321 AFEV--------DD---PEEVRKKLRDRGWYVSVTR-CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             EEEe--------CC---HHHHHHHHHHCCceeccCC-CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            4433        11   2468888999999997653 356899999888999999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.87  E-value=6.1e-20  Score=187.45  Aligned_cols=323  Identities=14%  Similarity=0.107  Sum_probs=209.6

Q ss_pred             CCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~  193 (480)
                      +-+++|++|+.+..  ..|.. ....+...+++++++++++.+. +.+++++||+++++.++....  .++++|++.+++
T Consensus        19 ~~~~~V~~a~~~~~--~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~--~~Gd~Vlv~~~~   93 (401)
T PLN02409         19 NIPERVLRAMNRPN--EDHRS-PAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL--SPGDKVVSFRIG   93 (401)
T ss_pred             CCCHHHHHHhcCCC--CCCCC-HHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC--CCCCEEEEeCCC
Confidence            34678888775533  12322 2234567788888888887653 578999999999999987543  367899999988


Q ss_pred             cccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       194 yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      |++.....+..           ..|+....++..+...  .|    .+++++.++.....++++|++..+.+++|.+.+ 
T Consensus        94 ~~~~~~~~~~~-----------~~g~~v~~v~~~~~~~--~~----~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~-  155 (401)
T PLN02409         94 QFSLLWIDQMQ-----------RLNFDVDVVESPWGQG--AD----LDILKSKLRQDTNHKIKAVCVVHNETSTGVTND-  155 (401)
T ss_pred             chhHHHHHHHH-----------HcCCceEEEECCCCCC--CC----HHHHHHHHhhCcCCCccEEEEEeecccccccCC-
Confidence            87643211100           0122222222211111  12    577888886421136788888888888999887 


Q ss_pred             CChHHHHHHH--HHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHHhhcCCC
Q 011669          274 PGYLPAVYKS--IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTRRN  349 (480)
Q Consensus       274 ~~~l~~l~~l--~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~~l~~~~  349 (480)
                         +++|.++  |+++|+++|+|++|+ +|..   .  ++..+...|+++  .+|+++++.++|+++.++++++.+....
T Consensus       156 ---~~~i~~l~~~~~~g~~~vvD~v~s-~g~~---~--id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~  226 (401)
T PLN02409        156 ---LAGVRKLLDCAQHPALLLVDGVSS-IGAL---D--FRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAK  226 (401)
T ss_pred             ---HHHHHHHHhhhccCcEEEEEcccc-cCCc---c--ccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCC
Confidence               8999999  999999999999997 5321   1  222233456664  5699987778999999999888765421


Q ss_pred             ----c-----------cc---cCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-ec-
Q 011669          350 ----Y-----------FN---TFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RG-  406 (480)
Q Consensus       350 ----~-----------~~---t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g-  406 (480)
                          .           .+   .++.|...+.+..++|+.+.+   ++..++.+++.+++++.|+++  .+..+... .. 
T Consensus       227 ~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~--g~~~~~~~~~~~  304 (401)
T PLN02409        227 SPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW--GLKLCTKKPEWR  304 (401)
T ss_pred             CCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCChhhc
Confidence                0           01   234455667777788887755   355677777777887777665  22222211 11 


Q ss_pred             cceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccC-c-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGG-F-YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       407 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~-~-~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+.+.++.+..        ......+.+.| .+.|+.+..|. . .+..|||+....++++++..++++|++++.+
T Consensus       305 s~~v~~~~~p~--------~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~  372 (401)
T PLN02409        305 SDTVTAVVVPE--------GIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKD  372 (401)
T ss_pred             ccceEEEeCCC--------CCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            22344454421        11234566655 46799998763 2 3678999999999999999999999999875

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.87  E-value=7.4e-20  Score=184.55  Aligned_cols=329  Identities=14%  Similarity=0.100  Sum_probs=196.3

Q ss_pred             CCCCHHHHHHHHHHHHhccccc------cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceE
Q 011669          114 GHCHPYVVDSIVNQIKRIQHST------VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDI  187 (480)
Q Consensus       114 Gh~~p~v~~A~~~~~~~~~~~~------~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~i  187 (480)
                      |+..|++.+++.+.......+.      ....++...++.+++++.++.  +++++++||++++..++.....  +++.|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~~--~gd~V   86 (361)
T cd06452          11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLCE--KGDWV   86 (361)
T ss_pred             CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhcC--CCCEE
Confidence            6788999999988664332211      112246788999999999965  7899999999999999986533  56778


Q ss_pred             EEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC---CCceEEEEEcccC
Q 011669          188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT---SGHVAGFLSESIQ  264 (480)
Q Consensus       188 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~---~~~~a~vi~epi~  264 (480)
                      ++.+++|++.... ...            .|+..+.++......|..|    .+++++.++...   ..++++|++...+
T Consensus        87 l~~~~~~~~~~~~-~~~------------~g~~~~~v~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~~~lv~l~~p~  149 (361)
T cd06452          87 VVDGLAHYTSYVA-AER------------AGLNVREVPNTGHPEYHIT----PEGYAEVIEEVKDEFGKPPALALLTHVD  149 (361)
T ss_pred             EEcCCcchHHHHH-HHh------------cCCEEEEEecCCCCCcccC----HHHHHHHHHHHhhccCCCceEEEEECCC
Confidence            8877776554321 111            1333333322211112233    566777665311   1257788887778


Q ss_pred             CCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHh
Q 011669          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV  344 (480)
Q Consensus       265 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~  344 (480)
                      +++|.+.+    +++|.++|+++|+++|+||+|. +|...   +....++....+.+++|++++|.|+|++++++++++.
T Consensus       150 n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~---~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~  221 (361)
T cd06452         150 GNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRMP---VSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADI  221 (361)
T ss_pred             CCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCcC---CCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHH
Confidence            88887765    9999999999999999999996 43221   2222334433445788999977799999999999888


Q ss_pred             hcCCCcc------ccCCC--cHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhHHhcCceeeE---eccceeEE
Q 011669          345 LTRRNYF------NTFGG--NPVCTAAGHAVLKVIQKD-KLQNNAHVVGSYLKERLTALKDKYGIIGDV---RGRGFLLG  412 (480)
Q Consensus       345 l~~~~~~------~t~~~--~~~~~aaa~a~L~~i~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~  412 (480)
                      +......      ..+++  ++..+++++++++.+.+. +...+..+..+++++.|+++    +.+...   .+...++.
T Consensus       222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l----~g~~v~~~~~~~~n~~~  297 (361)
T cd06452         222 VFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKI----EGIKQLGEKPKNHDLMF  297 (361)
T ss_pred             HhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEECCCCCCCceEE
Confidence            7553211      11111  122344445555543211 11122222335565555544    212111   22333444


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      ++...-.............+.+.|+++||.+...+. ++++|++.. ..++++++.++++|+++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~-~~~~ri~~~-g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         298 FETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPGL-TRYFKLSTY-GLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             EEcCCcchhhhhccccchhHHHHHHHcCceEEcCCC-ceEEEEEec-CCCHHHHHHHHHHHHHHh
Confidence            443100000000001123588899999999644332 457899863 379999999999999765

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR01814 kynureninase kynureninase

Probab=99.87  E-value=1.3e-19  Score=185.53  Aligned_cols=334  Identities=18%  Similarity=0.127  Sum_probs=198.7

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc--cc----CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV--LY----LNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~--~~----~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA  170 (480)
                      ++..|||..+      +|-.++.|.+++.+.+........  .+    ......+..+++ ++++.+.++|+|++|+|++
T Consensus        26 ~~~iyld~~a------~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~~~~~v~~~~~~t~~   98 (406)
T TIGR01814        26 NAVIYLDGNS------LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RLVGAKEDEVVVMNTLTIN   98 (406)
T ss_pred             CCcEEecCCC------cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-cccCCCCCcEEEeCCchHH
Confidence            4457888433      233478899999877765321111  11    111222333445 7777777889999999999


Q ss_pred             HHHHHHHHHhhcCCc-eEEEEcCCcccccccccc-cccCCCccccccCCCeeE----ecCCCCcCCCCCCChHHHHHHHH
Q 011669          171 NELAIMMARLYTGCN-DIISLRNAYHGNAAGTMG-ATAQSNWKFNVVQTGVHH----ALNPDPYRGVFGADGEMYAKDVQ  244 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~-~ii~~~~~yhG~~~~~~~-~~~~~~~~~~~~~~g~~~----~~~p~~~~~~~~~d~~~~~~~le  244 (480)
                      +..++.......+++ .|++.+..|. .....+. ....         .|+..    ...+...  .+..|    .++++
T Consensus        99 l~~~~~~~~~~~~~~~~i~~~~~~~~-s~~~~~~~~~~~---------~g~~~~~~~~~~~~~~--~g~~~----~~~l~  162 (406)
T TIGR01814        99 LHLLLASFYKPTPKRYKILLEAKAFP-SDHYAIESQLQL---------HGLTVEESMVQIEPRE--EETLR----LEDIL  162 (406)
T ss_pred             HHHHHHHhcCCcCCccEEEecCCCCC-hHHHHHHHHHHh---------cCCCcccceEEeccCC--CCccC----HHHHH
Confidence            999988652211223 4554445554 3222221 1000         01111    1111100  00112    46777


Q ss_pred             HHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--
Q 011669          245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--  322 (480)
Q Consensus       245 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--  322 (480)
                      +.++.. .+++++|+++.+++.+|.+.+    +++|.++|++||+++|+|++|+ +|..   .+..+.  ..+|++++  
T Consensus       163 ~~~~~~-~~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~---~id~~~--~gvD~~~~s~  231 (406)
T TIGR01814       163 DTIEKN-GDDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV---PLDLHD--WGVDFACWCT  231 (406)
T ss_pred             HHHHhc-CCCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc---cccccc--CCCCEEEEcC
Confidence            777543 247899999999999999988    9999999999999999999997 5432   222333  34566654  


Q ss_pred             ccccccCccccccccCHHHHHhhcCCCcc-------------c----------cCCCcHHHHHHHHHHHHHhhh---hHH
Q 011669          323 AKGIGNGIPLGAVVTTPEIAEVLTRRNYF-------------N----------TFGGNPVCTAAGHAVLKVIQK---DKL  376 (480)
Q Consensus       323 sK~~g~G~pig~v~~~~~~~~~l~~~~~~-------------~----------t~~~~~~~~aaa~a~L~~i~~---~~~  376 (480)
                      -|.+++|.. |+++..++....+.+...+             .          ..+.|..++++..++|+.+.+   +..
T Consensus       232 hK~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i  310 (406)
T TIGR01814       232 YKYLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEAL  310 (406)
T ss_pred             ccccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHH
Confidence            599987644 4444443333223221100             0          112345677777778888755   456


Q ss_pred             HHHHHHHHHHHHHHHHHhHH---hcCcee--eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCC
Q 011669          377 QNNAHVVGSYLKERLTALKD---KYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGN  451 (480)
Q Consensus       377 ~~~~~~~~~~l~~~L~~l~~---~~~~~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~  451 (480)
                      .++.+++.+++++.|+++..   .+.++.  ....++.++.+.+. .         ....+.+.|.++||++...+  .+
T Consensus       311 ~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~---------~~~~~~~~L~~~gi~v~~~~--~~  378 (406)
T TIGR01814       311 RKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V---------PGKAVFQALIKRGVIGDKRE--PS  378 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C---------CHHHHHHHHHHCCEEEeccC--CC
Confidence            67777777787777766421   011111  11223445555542 0         13568888999999886432  46


Q ss_pred             EEEEeC-CCCCCHHHHHHHHHHHHHHH
Q 011669          452 VFRITP-PLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       452 ~iRi~p-~~~~t~~~id~~l~~l~~~l  477 (480)
                      .+||+| ++.+|++|||.++++|++++
T Consensus       379 ~iRiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       379 VIRVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             eEEEechhccCCHHHHHHHHHHHHHHh
Confidence            899999 68899999999999999875

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.86  E-value=1.9e-19  Score=183.00  Aligned_cols=327  Identities=19%  Similarity=0.155  Sum_probs=195.2

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhcc---ccccccCChHHHHHHHHHH---HhCCC-CCCEEEEeCCHHHHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALA---SKMPG-NLKVVFFTNSGTEANEL  173 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~l~e~L~---~~~~~-~~~~v~f~~sGseA~~~  173 (480)
                      |||..++.      ..++.|.+++.+.+....   +....|.......+.+.++   +.++. +.++|+|++|++|++..
T Consensus         2 yld~aa~~------~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~   75 (382)
T TIGR03403         2 YLDNNATT------MLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW   75 (382)
T ss_pred             cccCcCCC------CCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence            67765543      356899999998887532   1111222233344444444   34443 45789999999999999


Q ss_pred             HHHHHHh----hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          174 AIMMARL----YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       174 Alk~ar~----~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      +++.+..    ..+++.|++....|+........+..          .|+....+|....+.  .|    .+++++.++ 
T Consensus        76 ~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~----------~G~~v~~v~~~~~g~--~d----~~~l~~~i~-  138 (382)
T TIGR03403        76 VLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLES----------LGVEVTYLPINEQGT--IT----AEQVREAIT-  138 (382)
T ss_pred             HHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHH----------CCCEEEEEecCCCCC--CC----HHHHHHhcc-
Confidence            9986531    12345677766554433322211110          123322222211111  12    567777774 


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g  327 (480)
                         +++++|++..+++++|.+.+    +++|.++|++||+++|+|++|. +|..   .  ++.....+|++++|  |.+|
T Consensus       139 ---~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~---~--~~~~~~~~D~~~~s~~K~~g  205 (382)
T TIGR03403       139 ---EKTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI---P--VDVQKAGVDFLSFSAHKFHG  205 (382)
T ss_pred             ---cCCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC---c--cCccccCCCEEEEcchhhCC
Confidence               25678888888899999887    8999999999999999999986 4321   1  22223457888777  9654


Q ss_pred             cCccccccccCHHHHHhhcCCC-------ccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRN-------YFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKY  398 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~-------~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~  398 (480)
                       ...+|+++.+++..  +.+..       ....+..|..++.++.++++.+.+  +...++.+++.++++++|.++    
T Consensus       206 -p~G~g~l~vr~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~----  278 (382)
T TIGR03403       206 -PKGVGGLYIRKGVE--LTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLEL----  278 (382)
T ss_pred             -CCceEEEEECCCCC--CCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----
Confidence             22357776665431  11110       012334566777777777776543  223345555555555555443    


Q ss_pred             CceeeEecc----ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---------------------CCCEE
Q 011669          399 GIIGDVRGR----GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---------------------YGNVF  453 (480)
Q Consensus       399 ~~~~~v~g~----g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~i  453 (480)
                      +.+..+...    +.++.+.+...         ....+...|.++||.++.|..                     .++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~i  349 (382)
T TIGR03403       279 PDVFVVGDREHRVPNTILISIKGV---------EGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAI  349 (382)
T ss_pred             CCEEEECCCCCCcCCEEEEEeCCC---------CHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeE
Confidence            333222211    23444444210         134566678899999986421                     12579


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          454 RITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |+++...+|++|||+++++|++++++
T Consensus       350 R~s~~~~~t~~did~~~~~l~~~~~~  375 (382)
T TIGR03403       350 RLSLSRFTTEEEIDYTIEVFKKAVQR  375 (382)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988764

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.86  E-value=4.1e-19  Score=181.68  Aligned_cols=328  Identities=15%  Similarity=0.124  Sum_probs=199.3

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc-------cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL-------YLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~-------~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~  171 (480)
                      +.|||..+..      ..++.|.+++.+.+.........       ...+...+++++|++.++.+.++|+|++|+|+++
T Consensus         4 ~~yld~aa~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~   77 (402)
T TIGR02006         4 PIYLDYAATT------PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESN   77 (402)
T ss_pred             cEEeeCCcCC------CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHH
Confidence            4789976542      45799999998877543211110       1124567788999999987777899999999999


Q ss_pred             HHHHHHHHhh--cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          172 ELAIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       172 ~~Alk~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      +.+++.+...  .+++.|++....|+........+..          .|+....+|....  +..|    .+++++.++ 
T Consensus        78 ~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~----------~g~~v~~v~~~~~--~~~d----~~~l~~~l~-  140 (402)
T TIGR02006        78 NLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLER----------EGFEVTYLPPKSN--GLID----LEELKAAIR-  140 (402)
T ss_pred             HHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHh----------cCCEEEEEccCCC--CcCC----HHHHHHhcC-
Confidence            9998866432  3456676666554432222111110          1222222221111  1112    567777764 


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g  327 (480)
                         +++++|++..+++++|.+.+    +++|.++|++||+++|+|++|+ +|..     .++..+..+|++++|  |.+|
T Consensus       141 ---~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~-----~~~~~~~~~D~~~~s~~K~~g  207 (402)
T TIGR02006       141 ---DDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI-----PINVNELKVDLMSISGHKIYG  207 (402)
T ss_pred             ---CCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc-----ccCccccCCCEEEEehhhhcC
Confidence               35788999999999999887    9999999999999999999996 4422     133335678999988  9654


Q ss_pred             cCccccccccCHHHHHhhcCCCcc-------ccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRNYF-------NTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKY  398 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~~~-------~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~  398 (480)
                       ...+|+++++++....+.....+       .....+....++..++|+.+++  +...++.+++.+++++.|+++    
T Consensus       208 -p~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~----  282 (402)
T TIGR02006       208 -PKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSI----  282 (402)
T ss_pred             -CCceEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----
Confidence             34578888887644333322111       1122344555555577877654  233455666666666666543    


Q ss_pred             Cceee-----EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---------------------CCCE
Q 011669          399 GIIGD-----VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---------------------YGNV  452 (480)
Q Consensus       399 ~~~~~-----v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~  452 (480)
                      +.+.-     .+..+ .+.+.|...     +    ...+...+  +|+.++.|..                     ..+.
T Consensus       283 ~~v~~~~~~~~~~p~-~~~v~f~~~-----~----~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~  350 (402)
T TIGR02006       283 EEVYLNGDLEHRVPG-NLNVSFNYV-----E----GESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSS  350 (402)
T ss_pred             CCEEEeCCccccCCC-eEEEEEeCc-----C----HHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCce
Confidence            22211     11111 112333211     0    12333333  4665544310                     1368


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          453 FRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       453 iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +|+++...+|++|||++++.|+++++.
T Consensus       351 vR~S~~~~~t~edid~l~~~l~~~~~~  377 (402)
T TIGR02006       351 IRFTIGRFTTEEEIDYAVKLVKSAIDK  377 (402)
T ss_pred             EEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988753

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.86  E-value=2.4e-19  Score=184.77  Aligned_cols=331  Identities=15%  Similarity=0.110  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccc
Q 011669          119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA  198 (480)
Q Consensus       119 ~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~  198 (480)
                      .+.+++.+++....+  ....+....+|+++++++++  .+.+++|+||++|+..++.....  +++ ||..++.|..+.
T Consensus        58 a~~~a~~~a~~~g~~--~Y~~~~g~~~Lreaia~~~~--~~~vv~t~ggt~A~~~~~~all~--pGD-Vii~~p~~~~~~  130 (460)
T PRK13238         58 AMSDRQWAAMMRGDE--AYAGSRSYYRLEDAVKDIFG--YPYTIPTHQGRAAEQILFPVLIK--KGD-VVPSNYHFDTTR  130 (460)
T ss_pred             hhhHHHHHHHHhCCc--ccCCCCCHHHHHHHHHHHhC--CCcEEECCCHHHHHHHHHHHhCC--CCC-EEccCCcccchH
Confidence            577777777754321  12235678899999999995  46799999999999999876533  556 888888775544


Q ss_pred             ccccccccCCCccccccCCCeeEecCCCC---c-CCCCC--CChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeC
Q 011669          199 AGTMGATAQSNWKFNVVQTGVHHALNPDP---Y-RGVFG--ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL  272 (480)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~g~~~~~~p~~---~-~~~~~--~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  272 (480)
                      .......+..           ..++....   . ..+|.  -|    .++|++.++...++++++|+++..+|++|..+.
T Consensus       131 ~~i~~~G~~~-----------v~v~~~~~~~~~~~~~f~g~id----~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~  195 (460)
T PRK13238        131 AHIELNGATA-----------VDLVIDEALDTGSRHPFKGNFD----LEKLEALIEEVGAENVPFIVMTITNNSAGGQPV  195 (460)
T ss_pred             HHHHHcCCEE-----------EEEeccccccccccccccCCcC----HHHHHHHHhhcCCCceeEEEEecCCCCCCCcCC
Confidence            3322222111           11111100   0 01221  23    688998887543457899999887777664556


Q ss_pred             CCChHHHHHHHHHHhCCEEEEcccccC----ccccC-CCccccccc------CCCcceeeec--cccccCcccc-ccccC
Q 011669          273 APGYLPAVYKSIKKAGGLCIADEVQAG----FARTG-SHFWGFEAH------GVVPDIVTMA--KGIGNGIPLG-AVVTT  338 (480)
Q Consensus       273 ~~~~l~~l~~l~~~~gillI~DEv~tg----fgr~G-~~~~~~~~~------~~~pDivt~s--K~~g~G~pig-~v~~~  338 (480)
                      +.+.+++|+++|++||+++|+|+++..    |.... .........      +-..|+.+||  |...  .+.| +++++
T Consensus       196 s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~--~~~GG~i~~~  273 (460)
T PRK13238        196 SMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAM--VNIGGLLCFR  273 (460)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCC--CcceeEEEcC
Confidence            888899999999999999999997742    11000 000000100      1124555555  2111  1323 55556


Q ss_pred             -HHHHHhhcCCC----ccccCCCcHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669          339 -PEIAEVLTRRN----YFNTFGGNPVCTAAGH-AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (480)
Q Consensus       339 -~~~~~~l~~~~----~~~t~~~~~~~~aaa~-a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  412 (480)
                       +++++.+....    .+.|+++++..+.+|+ .+|+...++++.+...+..++|.+.|++.  .++.+  ....|.++.
T Consensus       274 d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~--G~~~~--~p~Gg~~v~  349 (460)
T PRK13238        274 DEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA--GVPIQ--TPAGGHAVF  349 (460)
T ss_pred             hHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC--CCCeE--ccCCceEEE
Confidence             57888776542    2458888766644444 35554334455555555567777777664  33333  234456666


Q ss_pred             EEEecCCCcCCC-CHHHHHHHH-HHHHHcCceeeccCcC---------------CCEEEEeCCC-CCCHHHHHHHHHHHH
Q 011669          413 VEFVTDRQLKTP-AKAETLYIM-DKMKEMGVLVGKGGFY---------------GNVFRITPPL-CFTKEDADYLVDVMD  474 (480)
Q Consensus       413 i~~~~~~~~~~~-~~~~~~~~~-~~l~~~Gv~v~~~~~~---------------~~~iRi~p~~-~~t~~~id~~l~~l~  474 (480)
                      +++..-.. ..+ .......++ +.+++.||.+.+++.+               .+.+||+.|- ..|.+++|.+.++|.
T Consensus       350 ~d~~~~~~-~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~  428 (460)
T PRK13238        350 VDAGKFLP-HIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALK  428 (460)
T ss_pred             EEchhcCC-CCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHH
Confidence            66532110 001 000123344 4556789999886521               2679999773 449999999999999


Q ss_pred             HHHh
Q 011669          475 YSLS  478 (480)
Q Consensus       475 ~~l~  478 (480)
                      ++.+
T Consensus       429 ~~~~  432 (460)
T PRK13238        429 AVKE  432 (460)
T ss_pred             HHHH
Confidence            8764

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.86  E-value=2e-19  Score=181.85  Aligned_cols=321  Identities=16%  Similarity=0.085  Sum_probs=199.6

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC--CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~--~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~  193 (480)
                      ..|.|.+++.+..   .|....|. ....+++++|+++++...  +.+++++||+++++.++.....  +++++++..++
T Consensus        16 ~~~~~~~a~~~~~---~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~--~~~~vlv~~~~   89 (368)
T PRK13479         16 TSRTVREAMLRDW---GSWDDDFN-ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP--RDGKVLVPDNG   89 (368)
T ss_pred             CCHHHHHHhCCCC---CCCChHHH-HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC--CCCeEEEEeCC
Confidence            4577777765543   22222232 577889999999987643  4688999999999999986643  56678887777


Q ss_pred             cccccc-cccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeC
Q 011669          194 YHGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL  272 (480)
Q Consensus       194 yhG~~~-~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  272 (480)
                      |++... ......+.          .+..++.+.  .  +..|    .+++++.++..  .+++.|.+..+++++|.+.+
T Consensus        90 ~~~~~~~~~~~~~g~----------~~~~i~~~~--~--~~~d----~~~l~~~l~~~--~~~~~v~~~~~~~~tG~~~~  149 (368)
T PRK13479         90 AYGARIAQIAEYLGI----------AHVVLDTGE--D--EPPD----AAEVEAALAAD--PRITHVALVHCETTTGILNP  149 (368)
T ss_pred             chHHHHHHHHHHcCC----------cEEEEECCC--C--CCCC----HHHHHHHHHhC--CCCcEEEEEcccCccccccC
Confidence            776532 11111110          122232221  1  1123    57788777632  24556666667777888877


Q ss_pred             CCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccccccCHHHHHhhcCCCc
Q 011669          273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNY  350 (480)
Q Consensus       273 ~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~~  350 (480)
                          +++|.++|+++|+++|+|++|. ||...     ++.....+|++  +++|.+.++.++|++++++++++.+.....
T Consensus       150 ----~~~i~~l~~~~~~~livDa~~~-~g~~~-----~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~  219 (368)
T PRK13479        150 ----LDEIAAVAKRHGKRLIVDAMSS-FGAIP-----IDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSR  219 (368)
T ss_pred             ----HHHHHHHHHHcCCEEEEEcccc-cCCcc-----ccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCC
Confidence                8999999999999999998774 65321     22222345665  567998765567999999998877654321


Q ss_pred             -----------------cccCCCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCceeeE-eccc
Q 011669          351 -----------------FNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRG  408 (480)
Q Consensus       351 -----------------~~t~~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g  408 (480)
                                       ...|+.|....++..++++.+.++    +..+++.+..+++++.|+++  .+..+..- ...+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~  297 (368)
T PRK13479        220 SLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL--GFEPLLDAEIQSP  297 (368)
T ss_pred             CeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc--CCcccCCchhcCc
Confidence                             111355666667777777766443    33455555666666666554  22111110 0111


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-GNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ....+.+....      ......+.+.|.++||.+.++... .+.+|++.....+++|++.++++|+++++++
T Consensus       298 ~~~~~~~~~~~------~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        298 IIVTFHAPADP------AYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             eEEEEECCCCC------CcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence            22223221110      012457888999999999876432 3589998655679999999999999998753

>PLN02368 alanine transaminase

Probab=99.85  E-value=5.7e-20  Score=187.01  Aligned_cols=207  Identities=13%  Similarity=0.054  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCe
Q 011669          142 AIADFAEALASKMP--GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (480)
Q Consensus       142 ~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~  219 (480)
                      ....+++.+.+..+  .+.++|++|+|+++++..+++.... .+++.|++.+++|..+........             .
T Consensus       112 LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~-~pGd~Vli~~P~Y~~y~~~~~~~g-------------~  177 (407)
T PLN02368        112 VRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIR-GEKDGVLVPVPQYPLYSATISLLG-------------G  177 (407)
T ss_pred             HHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcC-CCCCEEEEeCCCCccHHHHHHHcC-------------C
Confidence            33444444443323  3567899999999999999886531 257889999999987765544332             2


Q ss_pred             eEecCCCCcCCCCCCChHHHHHHHHHHHHccC-C-CceE-EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc
Q 011669          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-S-GHVA-GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (480)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-~-~~~a-~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  296 (480)
                      ..+++|......|+-|    .+++++.++... . .+++ .++++| +|++|.+ .+++.+++|.++|++||+++|+||+
T Consensus       178 ~~v~v~~~~~~~~~~d----~~~le~~i~~~~~~~~~~k~l~l~nP-~NPTG~v-~s~e~l~~l~~~a~~~~~~II~DE~  251 (407)
T PLN02368        178 TLVPYYLEESENWGLD----VNNLRQSVAQARSKGITVRAMVIINP-GNPTGQC-LSEANLREILKFCYQERLVLLGDEV  251 (407)
T ss_pred             EEEEEecccccCCCCC----HHHHHHHHHHHhhcCCCeEEEEEECC-CCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEcc
Confidence            2333332222234444    567777775311 1 1456 455556 6777766 4899999999999999999999999


Q ss_pred             ccCccccCC-Ccccc-cc---c-------CCCcceeeecccc-c-cCccccccc---cCHHHHHhhcCCCccccCCCcHH
Q 011669          297 QAGFARTGS-HFWGF-EA---H-------GVVPDIVTMAKGI-G-NGIPLGAVV---TTPEIAEVLTRRNYFNTFGGNPV  359 (480)
Q Consensus       297 ~tgfgr~G~-~~~~~-~~---~-------~~~pDivt~sK~~-g-~G~pig~v~---~~~~~~~~l~~~~~~~t~~~~~~  359 (480)
                      |..|.+.+. .+.+. +.   .       +...-+-+|||++ + .|||+||++   +++++++.+.... ..+++.|.+
T Consensus       252 Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-~~~~~~~~~  330 (407)
T PLN02368        252 YQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-SIALSPNVS  330 (407)
T ss_pred             ccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh-cccCCCCcH
Confidence            998865542 12121 10   0       1112233789999 5 799999999   4888888877643 346778889


Q ss_pred             HHHHHHHHHH
Q 011669          360 CTAAGHAVLK  369 (480)
Q Consensus       360 ~~aaa~a~L~  369 (480)
                      ++.++.++|+
T Consensus       331 ~Q~aa~~~l~  340 (407)
T PLN02368        331 GQIFMGLMVN  340 (407)
T ss_pred             HHHHHHHHhC
Confidence            9999998885

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.85  E-value=8.5e-19  Score=177.51  Aligned_cols=320  Identities=20%  Similarity=0.263  Sum_probs=215.0

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhcccc---cccc----CChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS---TVLY----LNHAIADFAEALASKMPGNL-KVVFFTNSGTEANE  172 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~---~~~~----~~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~  172 (480)
                      |||-.+      .|..++.|.+++.+.+.+....   ....    ..+...+.++.++++++.+. +.|+|+.|+|+|++
T Consensus         2 Yld~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~   75 (371)
T PF00266_consen    2 YLDNAG------TGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALN   75 (371)
T ss_dssp             EEBTSS------S-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHH
T ss_pred             EeeCCC------ccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhh
Confidence            666433      2467899999999988764211   1111    13455788999999998777 78999999999999


Q ss_pred             HHHHHHHh-hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          173 LAIMMARL-YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       173 ~Alk~ar~-~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      .++...+. ..++++|++....|++...........         .|......+....+.  .|    .+++++.++   
T Consensus        76 ~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~---------~g~~v~~i~~~~~~~--~~----~~~~~~~l~---  137 (371)
T PF00266_consen   76 AVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKR---------KGAEVRVIPADPGGS--LD----LEDLEEALN---  137 (371)
T ss_dssp             HHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHH---------TTEEEEEEEEGTTSS--CS----HHHHHHHHH---
T ss_pred             hhhhcccccccccccccccccccccccccccccccc---------chhhhccccccccch--hh----hhhhhhhhc---
Confidence            99997743 457789999999998766333222110         122222222111111  12    677888885   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccC
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNG  329 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G  329 (480)
                       ++++.|++..+.+.+|.+.|    +++|.++|+++|+++++|-+|+ +|...     ++.....+|++++|  | ++|+
T Consensus       138 -~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~~-----id~~~~~~D~~~~s~~K-l~gp  205 (371)
T PF00266_consen  138 -PDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCVP-----IDLDELGADFLVFSSHK-LGGP  205 (371)
T ss_dssp             -TTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTSS-------TTTTTESEEEEESTS-TTSS
T ss_pred             -cccceEEeecccccccEEee----eceehhhhhccCCceeEechhc-ccccc-----ccccccccceeeecccc-cCCC
Confidence             48899999999999999888    9999999999999999999997 54332     33444567888776  9 8887


Q ss_pred             ccccccccCHHHHHhhcCCCcccc------------------C---CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHH
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNT------------------F---GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGS  385 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t------------------~---~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~  385 (480)
                      ..+|+++++++.++.+.+...+..                  |   ..|.....+..++|+.+.+   +++.++..++.+
T Consensus       206 ~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~  285 (371)
T PF00266_consen  206 PGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAE  285 (371)
T ss_dssp             STEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHH
Confidence            778999999999888854321111                  1   2344555666677777744   345566677777


Q ss_pred             HHHHHHHHhHHhcCcee-----eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCC----------
Q 011669          386 YLKERLTALKDKYGIIG-----DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG----------  450 (480)
Q Consensus       386 ~l~~~L~~l~~~~~~~~-----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~----------  450 (480)
                      ++++.|+++    +.+.     .-...+.++.+.+...         ....+.+.|.++||.+..|....          
T Consensus       286 ~~~~~l~~~----~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~  352 (371)
T PF00266_consen  286 YLREALEEL----PGIEVLGPDDEPRRPSIVSFNLPGS---------DADDVVKYLEERGIAVSTGSACAGPSLDILGMG  352 (371)
T ss_dssp             HHHHHHHHT----TTEEESSSSCGGBGTTEEEEEETTS---------SHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTT
T ss_pred             HHHhhhhcC----CceeEeeecccccccceEEEeecCC---------CHHHHHHHHhhcCEEEeccCcccHHHHHHhCCC
Confidence            777777665    3221     1233455666666221         14678888998899999854332          


Q ss_pred             CEEEEeCCCCCCHHHHHHH
Q 011669          451 NVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       451 ~~iRi~p~~~~t~~~id~~  469 (480)
                      +.+|+++....|++|||++
T Consensus       353 ~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  353 GVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             TEEEEE-GTTSSHHHHHHH
T ss_pred             CEEEEeccCCCCHHHHhhC
Confidence            7999999999999999975

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PLN02651 cysteine desulfurase

Probab=99.84  E-value=2.7e-19  Score=180.62  Aligned_cols=319  Identities=17%  Similarity=0.126  Sum_probs=195.9

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhcc-cccc------ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTV------LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~------~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~  173 (480)
                      |||..+.      +..++.|.+++.+.+.... ....      ....+...+++++|+++++.+.++|+|++|+|+|+..
T Consensus         2 Yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~   75 (364)
T PLN02651          2 YLDMQAT------TPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNL   75 (364)
T ss_pred             cccCcCC------CCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHH
Confidence            6665433      3457899999988875431 1110      0113446788899999998777789999999999999


Q ss_pred             HHHHHHhh--cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          174 AIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       174 Alk~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      +++.+...  .++++||+.+..|++.......+..          .|+....+|....  +..|    .++++++++   
T Consensus        76 ~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~----------~g~~v~~v~~~~~--~~~d----~~~l~~~i~---  136 (364)
T PLN02651         76 AIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQ----------EGFEVTYLPVKSD--GLVD----LDELAAAIR---  136 (364)
T ss_pred             HHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHh----------cCCEEEEEccCCC--CcCC----HHHHHHhcC---
Confidence            99876432  3456777766666543322211110          1322222221111  1112    577877775   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccC
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNG  329 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G  329 (480)
                       +++++|++..+++++|.+.+    +++|.++|++||+++++|.+|+ +|..   .  ++..+..+|++++|  | +++.
T Consensus       137 -~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~---~--~~~~~~~~D~~~~s~hK-~~gp  204 (364)
T PLN02651        137 -PDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI---P--VDVDDLGVDLMSISGHK-IYGP  204 (364)
T ss_pred             -CCcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc---c--cCcccCCCCEEEechhh-hCCC
Confidence             36788999999999999987    9999999999999999999997 4322   1  23334456888776  8 5554


Q ss_pred             ccccccccCHHHHHhhcCCCcc-------ccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYF-------NTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~-------~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      ..+|+++++++..+.+.+...+       .....|..+..+..++|+.+.+  ++..++.+++.++++++|++......+
T Consensus       205 ~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i  284 (364)
T PLN02651        205 KGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRV  284 (364)
T ss_pred             CceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence            6689999998766555432211       1223455666777788887754  344566666666666666542111112


Q ss_pred             eee--E-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---------------------CCCEEEEe
Q 011669          401 IGD--V-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---------------------YGNVFRIT  456 (480)
Q Consensus       401 ~~~--v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~  456 (480)
                      +..  . .....++.+.+..         .....+.+.|.+  |.++.|..                     ..+.+|++
T Consensus       285 ~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S  353 (364)
T PLN02651        285 NGPRDPEKRYPGTLNLSFAY---------VEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLG  353 (364)
T ss_pred             ECCCCcccCcCCEEEEEeCC---------CCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEE
Confidence            221  0 1112244444421         113456666654  66654420                     12689999


Q ss_pred             CCCCCCHHHHH
Q 011669          457 PPLCFTKEDAD  467 (480)
Q Consensus       457 p~~~~t~~~id  467 (480)
                      ++..+|++|||
T Consensus       354 ~~~~~t~~did  364 (364)
T PLN02651        354 VGRFTTEEEVD  364 (364)
T ss_pred             cCCCCCHHHcC
Confidence            99999999985

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.84  E-value=3.7e-18  Score=173.16  Aligned_cols=319  Identities=16%  Similarity=0.131  Sum_probs=197.6

Q ss_pred             CCHHHHHHHHHHHHhcc-cc-ccccC-----ChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCCceE
Q 011669          116 CHPYVVDSIVNQIKRIQ-HS-TVLYL-----NHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDI  187 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~-~~-~~~~~-----~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~~~i  187 (480)
                      .++.|.+++.+.+.+.. .. ...|.     .....++++.|+++++... ++|+|++|++++++.++...  ..+++.|
T Consensus        12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~--~~~gd~v   89 (376)
T TIGR01977        12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGL--LKEGDHV   89 (376)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhc--cCCCCEE
Confidence            46799999988887642 11 11122     2556789999999987533 48999999999999988753  2356788


Q ss_pred             EEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCC
Q 011669          188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG  267 (480)
Q Consensus       188 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~  267 (480)
                      ++....|++..........         ..|+....++...  .+..|    .+++++.++    .++++|++..+++++
T Consensus        90 l~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~--~~~~d----~~~l~~~~~----~~~~~v~~~~~~n~t  150 (376)
T TIGR01977        90 ITTPMEHNSVARPLECLKE---------QIGVEITIVKCDN--EGLIS----PERIKRAIK----TNTKLIVVSHASNVT  150 (376)
T ss_pred             EECcchhhHHHHHHHHHHH---------HcCcEEEEEecCC--CCCcC----HHHHHHhcC----CCCeEEEEECCCCCc
Confidence            8877665443221111100         0122222222111  11123    567777774    267788888888889


Q ss_pred             cceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHH-HHh
Q 011669          268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEI-AEV  344 (480)
Q Consensus       268 G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~-~~~  344 (480)
                      |.+.+    +++|.++|+++|+++|+|++|+ +|...   +..+  ...+|++++|  |.+++.-..|+++.+++. +..
T Consensus       151 G~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~---~~~~--~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~  220 (376)
T TIGR01977       151 GTILP----IEEIGELAQENGIFFILDAAQT-AGVIP---IDMT--ELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKP  220 (376)
T ss_pred             cccCC----HHHHHHHHHHcCCEEEEEhhhc-cCccC---CCch--hcCCCEEEecccccccCCCCceEEEEcCCcCcCc
Confidence            98877    8999999999999999999996 54332   1122  2346777554  998764456766666543 111


Q ss_pred             hcCCC--c--------------cccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCcee--e
Q 011669          345 LTRRN--Y--------------FNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIG--D  403 (480)
Q Consensus       345 l~~~~--~--------------~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~  403 (480)
                      +....  .              +.....+....++..++|+.+.+.   ...++.+++.++++++|.++. ......  +
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~  299 (376)
T TIGR01977       221 LKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREIN-KVKIYGPAD  299 (376)
T ss_pred             eecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC-CeEEeCCCC
Confidence            11100  0              011123455566666788877653   456777777777777776542 111111  0


Q ss_pred             EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCc------------CCCEEEEeCCCCCCHHHHHHHH
Q 011669          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGF------------YGNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       404 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~------------~~~~iRi~p~~~~t~~~id~~l  470 (480)
                      ....+.++++.+...         ....+.+.|.++ ||.+..+..            ..+.+|+++...+|++|++.++
T Consensus       300 ~~~~~~~v~~~~~~~---------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~  370 (376)
T TIGR01977       300 PANRVGVVSFTVEGI---------DSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLL  370 (376)
T ss_pred             ccccCCeEEEEECCC---------CHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHH
Confidence            111344556655211         145688888887 999876531            2368999999999999999999


Q ss_pred             HHHHH
Q 011669          471 DVMDY  475 (480)
Q Consensus       471 ~~l~~  475 (480)
                      ++|++
T Consensus       371 ~~l~~  375 (376)
T TIGR01977       371 EALSE  375 (376)
T ss_pred             HHHhh
Confidence            99975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.83  E-value=2.9e-18  Score=164.40  Aligned_cols=337  Identities=18%  Similarity=0.182  Sum_probs=214.0

Q ss_pred             eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHH
Q 011669           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA  174 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~A  174 (480)
                      ..||...+|-.+-+..-   |+.|...+|+++-+.+...                  ....-+++++++++++|.||+..
T Consensus       104 ~~eg~~~f~~la~fqdy---~Gl~~frqa~A~Fm~~~r~------------------~~v~fdP~~~Vv~~G~T~ane~l  162 (471)
T KOG0256|consen  104 TREGQSSFDELAMFQDY---HGLPSFRQAVAEFMERARG------------------NRVKFDPERVVVTNGATSANETL  162 (471)
T ss_pred             ccccccchhhHhhcccc---cCchHHHHHHHHHHHHHhC------------------CCCccCccceEEecccchhhHHH
Confidence            34666666666655555   8888888888887766311                  01122567899999999999987


Q ss_pred             HHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCc
Q 011669          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (480)
Q Consensus       175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (480)
                      +.....  +++..++..|-|.|+.....--            .|+..+|+...-...|..+.+.+-++++++.+.  ..+
T Consensus       163 ~fcLad--pgdafLvPtPyY~gfdrdl~~r------------Tgveivpv~c~Ss~~f~itv~alE~A~~~A~~~--~~k  226 (471)
T KOG0256|consen  163 MFCLAD--PGDAFLVPTPYYPGFDRDLRWR------------TGVEIVPVHCSSSNGFQITVEALEAALNQARKL--GLK  226 (471)
T ss_pred             HHHhcC--CCceeeecCCCCCcccccceec------------cCceEEEEEeecCCCccccHHHHHHHHHHHHHh--CCc
Confidence            664433  7888999999998874332211            256666654433334444544333444444432  347


Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc----ccCCCccee----eecccc
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE----AHGVVPDIV----TMAKGI  326 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~----~~~~~pDiv----t~sK~~  326 (480)
                      ++++|+...+|+-|.+ .+++.|..+.+.|.++++.+|+||||+|-....+.+.++-    .....+|.+    ++||-+
T Consensus       227 VkGvlitNPsNPLG~~-~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~  305 (471)
T KOG0256|consen  227 VKGVLITNPSNPLGTT-LSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDF  305 (471)
T ss_pred             eeEEEEeCCCCCCCCc-cCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEecccc
Confidence            8888877777777766 4888899999999999999999999998544443333321    112245533    789999


Q ss_pred             c-cCccccccccCH-HHHHhhcCCCccccCCCcHHHHHHHHHHHHH--hhhh---HHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          327 G-NGIPLGAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV--IQKD---KLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       327 g-~G~pig~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~--i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      | .|+|+|.+.... .+.....+...++  ..++..+......|..  +.++   +-..+++...+++.++|+++    +
T Consensus       306 GlpGfRvGviYS~ne~VvsaA~kmssf~--~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l----g  379 (471)
T KOG0256|consen  306 GLPGFRVGVIYSNNEDVVSAATKMSSFG--LVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL----G  379 (471)
T ss_pred             CCCceEEEEEEecChHHHHHHHHHhhcc--CCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc----C
Confidence            9 799999999764 4555544433222  2345556555554532  1111   11233333444444555444    5


Q ss_pred             ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       400 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      +..--++.|+|+|+++..--.+..  ......+++.+.++ ++.+.||..+    .+|+|+++. +..++.++-++++|.
T Consensus       380 I~cl~s~AGlF~wvDlr~lL~s~t--fe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFA-n~~~~t~~~am~Ri~  456 (471)
T KOG0256|consen  380 IPCLKSNAGLFCWVDLRKLLTSLT--FEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFA-NMSEETLEVAMRRLK  456 (471)
T ss_pred             CceeecCCeeEEEEEhHHhcCcCC--hHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEec-cCCHHHHHHHHHHHH
Confidence            555667889999999864322221  12234466666666 9999998654    479999964 556666666999998


Q ss_pred             HHHh
Q 011669          475 YSLS  478 (480)
Q Consensus       475 ~~l~  478 (480)
                      ..+.
T Consensus       457 ~~~~  460 (471)
T KOG0256|consen  457 QFLD  460 (471)
T ss_pred             HHHH
Confidence            8764

>PRK14012 cysteine desulfurase; Provisional

Probab=99.82  E-value=6.3e-18  Score=173.09  Aligned_cols=327  Identities=14%  Similarity=0.137  Sum_probs=193.7

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHH--h-cccccc-----cc-CChHHHHHHHHHHHhCCCCCCEEEEeCCHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIK--R-IQHSTV-----LY-LNHAIADFAEALASKMPGNLKVVFFTNSGTE  169 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~--~-~~~~~~-----~~-~~~~~~~l~e~L~~~~~~~~~~v~f~~sGse  169 (480)
                      +.|+|..+.      +..++.|.+++.+.+.  . ......     .+ ..+...+++++++++++.+.+.++|++|||+
T Consensus         4 ~iyld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~   77 (404)
T PRK14012          4 PIYLDYSAT------TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATE   77 (404)
T ss_pred             eEEecCcCC------CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHH
Confidence            468886553      3467899999988775  2 111110     00 1245678889999999877778999999999


Q ss_pred             HHHHHHHHHHh--hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          170 ANELAIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       170 A~~~Alk~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      |++.+++.+..  ..+++.||+....|+........+..          .|+....++....  +..|    .+++++++
T Consensus        78 al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~----------~g~~~~~v~~~~~--g~~d----~~~l~~~i  141 (404)
T PRK14012         78 SDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLER----------EGFEVTYLDPQSN--GIID----LEKLEAAM  141 (404)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHh----------CCCEEEEEccCCC--CcCC----HHHHHHhc
Confidence            99999986542  23567787777776543322211110          1222222221111  1112    57788877


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cc
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KG  325 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~  325 (480)
                      +    .++++|++..+++++|.+.+    +++|.++|+++|+++|+|++|+ +|...     ++.....+|++++|  |.
T Consensus       142 ~----~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~-----~~~~~~~~D~~~~s~~K~  207 (404)
T PRK14012        142 R----DDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP-----IDLSKLKVDLMSFSAHKI  207 (404)
T ss_pred             C----CCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc-----cCcccCCCCEEEEehhhc
Confidence            5    35778989999999998887    8999999999999999999997 44221     22223458888777  97


Q ss_pred             cccCccccccccCHHHHHhhcCCCccc------cCC-CcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHH
Q 011669          326 IGNGIPLGAVVTTPEIAEVLTRRNYFN------TFG-GNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKD  396 (480)
Q Consensus       326 ~g~G~pig~v~~~~~~~~~l~~~~~~~------t~~-~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~  396 (480)
                      +|.+ ++|+++++++....+.+...+.      ..+ .+.....+..++++.++.  ++..++.+++.+++.+.|+++  
T Consensus       208 ~gp~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~--  284 (404)
T PRK14012        208 YGPK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDI--  284 (404)
T ss_pred             cCCC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC--
Confidence            6543 6788888876433332211111      111 222233333355554432  234455566666666666543  


Q ss_pred             hcCceeeE-----eccce-eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC---------------------cC
Q 011669          397 KYGIIGDV-----RGRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG---------------------FY  449 (480)
Q Consensus       397 ~~~~~~~v-----~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------~~  449 (480)
                        +.+...     +..+. .+++.+..           ...+...|.  ++.+.++.                     ..
T Consensus       285 --~~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~--~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~  349 (404)
T PRK14012        285 --EEVYLNGDLEQRVPGNLNVSFNYVE-----------GESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELA  349 (404)
T ss_pred             --CCEEEeCCccccCCCEEEEEEeCcC-----------HHHHHHhCC--CeEEEchhhhCCCCCCCCHHHHHcCCChhhc
Confidence              322111     11111 22222211           123444443  44443321                     01


Q ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          450 GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       450 ~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+.+|+++....|++|+|.+++.|+++++.
T Consensus       350 ~~~iRls~~~~~t~~dvd~~~~~l~~~~~~  379 (404)
T PRK14012        350 HSSIRFSLGRFTTEEEIDYAIELVRKSIGK  379 (404)
T ss_pred             CceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999988753

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.82  E-value=6.6e-18  Score=172.92  Aligned_cols=335  Identities=16%  Similarity=0.125  Sum_probs=190.6

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHH-hcc--cccc-cc-CChHH---HH-HHHHHHHhCCCCCCEEEEeCCHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQ--HSTV-LY-LNHAI---AD-FAEALASKMPGNLKVVFFTNSGTE  169 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~-~~~--~~~~-~~-~~~~~---~~-l~e~L~~~~~~~~~~v~f~~sGse  169 (480)
                      +++|.+..+...     -+|+|.+|+.+.+. +..  +... .| ..+..   .+ .++.+++.++.+...| +.+||++
T Consensus        19 ~~~~~~~~~~~~-----~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v-~~~sgt~   92 (402)
T cd00378          19 RETLELIASENF-----TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANV-QPHSGSQ   92 (402)
T ss_pred             HhCeeeeccCCc-----CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceee-ecCCcHH
Confidence            557777666543     37999999987652 321  1111 11 12222   33 3345667776554444 4457999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCe--eEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV--HHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~--~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      |+..++.....  ++++|++.++.|.+.........        ....|.  ..++++... ..+..|    .+++++.+
T Consensus        93 a~~~~l~~l~~--~Gd~Vl~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~-~~~~id----~~~l~~~i  157 (402)
T cd00378          93 ANLAVYFALLE--PGDTIMGLDLSHGGHLTHGSFTK--------VSASGKLFESVPYGVDP-ETGLID----YDALEKMA  157 (402)
T ss_pred             HHHHHHHHhcC--CCCEEEEecCccCcccccccccc--------ccccceeEEEecCCcCc-ccCCcC----HHHHHHHH
Confidence            99999987643  67889999988855432211000        000122  122221100 012223    67788877


Q ss_pred             HccCCCceEEEEE-cccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc-cCccccCCCcccccccCCCccee--eec
Q 011669          248 DFGTSGHVAGFLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIV--TMA  323 (480)
Q Consensus       248 ~~~~~~~~a~vi~-epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-tgfgr~G~~~~~~~~~~~~pDiv--t~s  323 (480)
                      ..   .+++++++ +|.+   |...+    +++|.++|++||+++|+||+| .|+...|.....+.    ..|++  +++
T Consensus       158 ~~---~~~~~v~~~~~~~---~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~----~~dv~~~s~s  223 (402)
T cd00378         158 LE---FKPKLIVAGASAY---PRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP----GADVVTTTTH  223 (402)
T ss_pred             Hh---CCCCEEEecCccc---CCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc----CCcEEEeccc
Confidence            53   24455555 4433   33333    999999999999999999996 44432331111111    24654  678


Q ss_pred             cccccCccccccccCH-HHHHhhcCCCccccCCCc-HHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669          324 KGIGNGIPLGAVVTTP-EIAEVLTRRNYFNTFGGN-PVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKY  398 (480)
Q Consensus       324 K~~g~G~pig~v~~~~-~~~~~l~~~~~~~t~~~~-~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~  398 (480)
                      |++ +|+|.|++++++ ++++.+........++.+ +...+++..++..+..   +++.+++.++.+++++.|.++  .+
T Consensus       224 K~l-~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~  300 (402)
T cd00378         224 KTL-RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER--GF  300 (402)
T ss_pred             cCC-CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC--CC
Confidence            999 678999999987 888777543322233332 2233332333433322   345566666666776666654  22


Q ss_pred             CceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc----Cc----CCCEEEEeCCCC----CCHHHH
Q 011669          399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG----GF----YGNVFRITPPLC----FTKEDA  466 (480)
Q Consensus       399 ~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~----~~~~iRi~p~~~----~t~~~i  466 (480)
                      .... ....+.++|+.+.....       ....+.+.|.++||.+.+.    ..    ..+.+||++...    ++++|+
T Consensus       301 ~~~~-~~~~~~~v~v~~~~~~~-------~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di  372 (402)
T cd00378         301 KVVS-GGTDNHLVLVDLRPKGI-------TGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEM  372 (402)
T ss_pred             eEee-cCCCCeEEEEeCCccCC-------CHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHH
Confidence            2111 11346777787642110       1245666788899999642    11    235799987653    479999


Q ss_pred             HHHHHHHHHHHhh
Q 011669          467 DYLVDVMDYSLSK  479 (480)
Q Consensus       467 d~~l~~l~~~l~~  479 (480)
                      +++++.|.+++++
T Consensus       373 ~~~~~~l~~~~~~  385 (402)
T cd00378         373 EEIADFIARALKD  385 (402)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.81  E-value=1.1e-17  Score=167.64  Aligned_cols=283  Identities=18%  Similarity=0.083  Sum_probs=166.2

Q ss_pred             ChHHHHHHHHHHHhCCCC--CCEEEEeCCHHHHHHHHHHHHHhh-----------cCCceEEEEcCCccccccccccccc
Q 011669          140 NHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLY-----------TGCNDIISLRNAYHGNAAGTMGATA  206 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~--~~~v~f~~sGseA~~~Alk~ar~~-----------~~~~~ii~~~~~yhG~~~~~~~~~~  206 (480)
                      .....+++++++++++.+  .+.++||+|||+||..+++.++..           .+.+.+|+.....|..........+
T Consensus        37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g  116 (345)
T cd06450          37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD  116 (345)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHh
Confidence            344566777777777643  346899999999999999988652           1223455555555554333222211


Q ss_pred             CCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHH
Q 011669          207 QSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI  284 (480)
Q Consensus       207 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~  284 (480)
                      .          .+..++...  .+  ..|    .++|++.++..  ...+++++++...++++|.+.+    +++|.++|
T Consensus       117 ~----------~~~~v~~~~--~~--~~d----~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~  174 (345)
T cd06450         117 V----------KVRLVPVDE--DG--RMD----PEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLA  174 (345)
T ss_pred             c----------CeEEeeeCC--CC--CcC----HHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHH
Confidence            1          112222111  11  123    56777777531  1124566666666667887755    99999999


Q ss_pred             HHhCCEEEEcccccCccccCCCcccccccCC-Cccee--eeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHH
Q 011669          285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCT  361 (480)
Q Consensus       285 ~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~  361 (480)
                      ++||+++|+|++|.++.......... ..+. ..|.+  +++|.++++.++|+++.+                      .
T Consensus       175 ~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~----------------------~  231 (345)
T cd06450         175 EKYDLWLHVDAAYGGFLLPFPEPRHL-DFGIERVDSISVDPHKYGLVPLGCSAVLVR----------------------A  231 (345)
T ss_pred             HHhCCeEEEechhhHHHhhChhhHHH-hcCccccCEEEEchhHhhCCCcchHHHHHH----------------------H
Confidence            99999999999997653211000000 0111 34644  567988888888988766                      2


Q ss_pred             HHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH
Q 011669          362 AAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK  437 (480)
Q Consensus       362 aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  437 (480)
                      .+..++++.+..+   +..++..++.+++++.|.++    +.+..+ ...+.++.+.+....   . .......+.+.|.
T Consensus       232 ~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~iv~f~~~~~~---~-~~~~~~~i~~~L~  303 (345)
T cd06450         232 LKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRAD----PGFELLGEPNLSLVCFRLKPSV---K-LDELNYDLSDRLN  303 (345)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceeEEEEEECCcc---h-hhHHHHHHHHHHH
Confidence            2333444444333   44555556666666665553    322111 123445555542210   0 0123467888999


Q ss_pred             HcCceeeccCc--CCCEEEEeCCCCC-CHHHHHHHHHHHHH
Q 011669          438 EMGVLVGKGGF--YGNVFRITPPLCF-TKEDADYLVDVMDY  475 (480)
Q Consensus       438 ~~Gv~v~~~~~--~~~~iRi~p~~~~-t~~~id~~l~~l~~  475 (480)
                      ++|+++.++..  ...++|+++...+ |++|+|++++.|++
T Consensus       304 ~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         304 ERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             hcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            99766544322  2468999988764 99999999999976

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.79  E-value=1.9e-16  Score=159.43  Aligned_cols=321  Identities=12%  Similarity=0.072  Sum_probs=188.5

Q ss_pred             CEEEeccCCcccccCCCC--CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      +.+|...+-+  .++|-+  +++|.+++.+.++.+.     ...+...+++++++++++.  +.+++++|+|+|+.++++
T Consensus         8 ~~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~~-----~~~~~~~~~~~~~a~~~g~--~~~~~~~g~t~al~~al~   78 (363)
T TIGR01437         8 KKVINASGKM--TILGVSTVSDEVADAQKRGAQNYF-----EIKELVNKTGEYIANLLGV--EDAVIVSSASAGIAQSVA   78 (363)
T ss_pred             ceEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHhhCC--CeEEEEcCHHHHHHHHHH
Confidence            3455543333  456655  8999999999876531     2346778899999999854  578999999999999999


Q ss_pred             HHHhhcCCc---------------eEEEEcCCccccc---ccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHH
Q 011669          177 MARLYTGCN---------------DIISLRNAYHGNA---AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM  238 (480)
Q Consensus       177 ~ar~~~~~~---------------~ii~~~~~yhG~~---~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~  238 (480)
                      .+..  +++               +||+..+.|..+.   ...+..            .|...+.++.    .+..|   
T Consensus        79 al~~--~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~------------~g~~~v~v~~----~~~~d---  137 (363)
T TIGR01437        79 AVIT--RGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRL------------GGGKVVEAGY----ANECS---  137 (363)
T ss_pred             HHhc--CCCcchhhcccccccccceEEEECccchhcCCchHHHHHh------------cCCeEEEEcC----CCCCC---
Confidence            7643  343               6776665554331   011111            1332222221    11123   


Q ss_pred             HHHHHHHHHHccCCCceEEEE-EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCc
Q 011669          239 YAKDVQDLIDFGTSGHVAGFL-SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP  317 (480)
Q Consensus       239 ~~~~le~~i~~~~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~p  317 (480)
                       .++++++++.    ++++++ ++..++.+|.+.+    +++|.++|++||+++|+|++|. .  .   ......+|  .
T Consensus       138 -~~~le~ai~~----~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~---~~~~~~~g--~  200 (363)
T TIGR01437       138 -AEQLEAAITE----KTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E--D---LQKYYRLG--A  200 (363)
T ss_pred             -HHHHHHhcCh----hceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C--c---hHHHHHcC--C
Confidence             6788888852    455554 5554556676666    8999999999999999999996 1  1   11111223  4


Q ss_pred             ceeeec--cccccCccccccccCHHHHHhhcCCCcc--ccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHH
Q 011669          318 DIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERL  391 (480)
Q Consensus       318 Divt~s--K~~g~G~pig~v~~~~~~~~~l~~~~~~--~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L  391 (480)
                      |++++|  |.++ |++.|++++++++++.+....++  ..+......+++..++++.+.+  .+..+...+..++++++|
T Consensus       201 D~~~~S~~K~l~-gp~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L  279 (363)
T TIGR01437       201 DLVIYSGAKAIE-GPTSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEAL  279 (363)
T ss_pred             CEEEEeCCcccC-CCceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHH
Confidence            777654  8885 55789999998887765432211  1111112233444455555433  122333333444566666


Q ss_pred             HHhHHhcCceeeE---eccce---eEEEEEecCCCcCCCCHHHHHHHHHHHHHcC--ceeeccCcCCCEEEEeCCCCCCH
Q 011669          392 TALKDKYGIIGDV---RGRGF---LLGVEFVTDRQLKTPAKAETLYIMDKMKEMG--VLVGKGGFYGNVFRITPPLCFTK  463 (480)
Q Consensus       392 ~~l~~~~~~~~~v---~g~g~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G--v~v~~~~~~~~~iRi~p~~~~t~  463 (480)
                      .++    +.+...   ...+.   ...+.+.....     ......+.+.|.++|  |..++-....+.+|+.|. +.++
T Consensus       280 ~~i----~g~~~~~~~~~~~~~~~~~~v~~~~~~~-----g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~-~~~~  349 (363)
T TIGR01437       280 NTL----KGVSASIVQDEAGRDIARAEIRFDESEL-----GMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPR-SVTG  349 (363)
T ss_pred             hcC----CCeEEEEecCCCCCcCceEEEEEeccCC-----CCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEee-cCCH
Confidence            654    222111   11111   12233322110     112467888898877  665542223467999988 5679


Q ss_pred             HHHHHHHHHHHHHH
Q 011669          464 EDADYLVDVMDYSL  477 (480)
Q Consensus       464 ~~id~~l~~l~~~l  477 (480)
                      +|++.++++|++++
T Consensus       350 ~e~~~~~~~l~~~~  363 (363)
T TIGR01437       350 GQLDIIVERIREIV  363 (363)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998753

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.79  E-value=9.5e-17  Score=155.37  Aligned_cols=296  Identities=15%  Similarity=0.096  Sum_probs=199.2

Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHH
Q 011669          160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY  239 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~  239 (480)
                      .++.|+|.+.+.+..++++..  .++.|++-..+|-+....             +...|+..+|++..       +....
T Consensus       126 diiit~G~t~~l~~~l~~~~N--~gd~vlie~~ty~~AL~s-------------~~a~gv~~ipv~md-------~~Gi~  183 (472)
T KOG0634|consen  126 DIIITNGNTDGLFKVLRTLIN--RGDHVLIEEYTYPSALQS-------------MEALGVKIIPVKMD-------QDGID  183 (472)
T ss_pred             eEEEecCCchHHHHHHHHhhc--CCCceEEecccchHHHHh-------------ccccCceEEecccc-------CCCCC
Confidence            689999999999999998876  566777777777432211             11135666665542       11122


Q ss_pred             HHHHHHHHHccCC-----CceEEEEEcc-cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcccc---CC-----
Q 011669          240 AKDVQDLIDFGTS-----GHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART---GS-----  305 (480)
Q Consensus       240 ~~~le~~i~~~~~-----~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~---G~-----  305 (480)
                      .+.|++.+.....     .+......-| .||++|... +.+--++|.+||+|||+++|.||+|--+-..   ++     
T Consensus       184 pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~  262 (472)
T KOG0634|consen  184 PESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELES  262 (472)
T ss_pred             HHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccC
Confidence            6788888875422     2356666666 888999875 7788899999999999999999999633222   10     


Q ss_pred             C--------------cccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHh
Q 011669          306 H--------------FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (480)
Q Consensus       306 ~--------------~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i  371 (480)
                      +              +...+..|.+...-+|||-++.|+|+||+.+++.+++.+.......|-+.+.+.+....+.|+..
T Consensus       263 p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~w  342 (472)
T KOG0634|consen  263 PAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRW  342 (472)
T ss_pred             ccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHH
Confidence            0              11112223333445899999999999999999988888776666678888889999999999887


Q ss_pred             hhhHHHHHHHHHHH---HHHHHHHHhHHhc-Cc---eeeEeccceeEEEEEecCCCcCCCC-HHHHHHHHHHHHHcCcee
Q 011669          372 QKDKLQNNAHVVGS---YLKERLTALKDKY-GI---IGDVRGRGFLLGVEFVTDRQLKTPA-KAETLYIMDKMKEMGVLV  443 (480)
Q Consensus       372 ~~~~~~~~~~~~~~---~l~~~L~~l~~~~-~~---~~~v~g~g~~~~i~~~~~~~~~~~~-~~~~~~~~~~l~~~Gv~v  443 (480)
                      .++++++.+.++..   ..+..+-..++++ |.   ...++-.|+|+|+++.-......+. ....+.+...+.++||.+
T Consensus       343 gqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~  422 (472)
T KOG0634|consen  343 GQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKL  422 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEE
Confidence            77765555555443   3333333333333 42   2345667999999985111100011 112345666778999999


Q ss_pred             eccCcC--------CC-EEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          444 GKGGFY--------GN-VFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       444 ~~~~~~--------~~-~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..|..|        .+ ++|++.++. ..+++++++++|..++++
T Consensus       423 v~G~~F~v~p~~s~~kiffRls~a~a-~~e~l~~g~~rf~~~ike  466 (472)
T KOG0634|consen  423 VCGSWFMVDPESSWSKIFFRLSIAFA-EPEKLDEGIERFGSVIKE  466 (472)
T ss_pred             ecCceeEEcCccCCCcceEEEEeecC-CHHHHHHHHHHHHHHHHH
Confidence            887422        23 899998754 678999999999998875

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.79  E-value=4.2e-17  Score=166.01  Aligned_cols=350  Identities=15%  Similarity=0.121  Sum_probs=196.2

Q ss_pred             eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHH
Q 011669           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA  174 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~A  174 (480)
                      -..|..||||.+-.++       ..+.+++.+++.....  ....+....+|++.++++++  .+.+++++||++|+..+
T Consensus        16 l~~~~v~iDlltds~t-------~ams~~~~~a~~~gd~--~Y~~~~g~~~Leeaia~~~g--~~~vv~t~~Gt~Al~la   84 (431)
T cd00617          16 LRSEDVYIDLLTDSGT-------GAMSDYQWAAMMLGDE--AYAGSKSFYDLEDAVQDLFG--FKHIIPTHQGRGAENIL   84 (431)
T ss_pred             CCCCCcCCCCCCCCCc-------HHHHHHHHHHHHhCCC--ccCCCCCHHHHHHHHHHHHC--CCeEEEcCCHHHHHHHH
Confidence            3457788999865544       3455555555554321  12236678899999999995  46899999999999999


Q ss_pred             HHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC----cCCCCC--CChHHHHHHHHHHHH
Q 011669          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP----YRGVFG--ADGEMYAKDVQDLID  248 (480)
Q Consensus       175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~----~~~~~~--~d~~~~~~~le~~i~  248 (480)
                      ++....  +++.| ..++.|...........+.+.           .++....    ...+|.  -|    +++|+++|+
T Consensus        85 ~~al~~--pGD~V-~~~~~f~~~~~~i~~~Ga~pv-----------~v~i~~~~~~~~~~pf~gniD----~e~Le~~I~  146 (431)
T cd00617          85 FSILLK--PGRTV-PSNMHFDTTRGHIEANGAVPV-----------DLVIDEAHDAQELIPFKGNID----VAKLEKLID  146 (431)
T ss_pred             HHHhCC--CCCEE-ccCCcccchHHHHHhCCCEeE-----------EEecccccccccccCCCCCcC----HHHHHHHhC
Confidence            876533  45544 566666544332222222111           1111000    001221  23    688998887


Q ss_pred             ccCCCceEEEEEcccCCC-CcceeCCCChHHHHHHHHHHhCCEEEEcccccCc---c---ccCCCcccccccCCCcceee
Q 011669          249 FGTSGHVAGFLSESIQGV-GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF---A---RTGSHFWGFEAHGVVPDIVT  321 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~-~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgf---g---r~G~~~~~~~~~~~~pDivt  321 (480)
                      ....+++++|+++..+|. +|. +.+.+.+++|+++|++||++||.|+++.-.   +   |.+ .........+...+.+
T Consensus       147 ~~~~~~~~~I~v~~p~N~~gG~-~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~-g~~~~si~ei~~e~~s  224 (431)
T cd00617         147 EVGAENIPYIVLTITNNTAGGQ-PVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREE-GYRDKSIAEIAREMFS  224 (431)
T ss_pred             cccCCCccEEEEECCcCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccc-cccCCCHHHHHHHhhc
Confidence            433345788888765555 465 458888999999999999999999996421   0   000 0000000011112234


Q ss_pred             eccccc-cCc-----ccc-ccccCH-HHHHhhcCCC----ccccCCCcHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHH
Q 011669          322 MAKGIG-NGI-----PLG-AVVTTP-EIAEVLTRRN----YFNTFGGNPVCTAAGHA-VLKVIQKDKLQNNAHVVGSYLK  388 (480)
Q Consensus       322 ~sK~~g-~G~-----pig-~v~~~~-~~~~~l~~~~----~~~t~~~~~~~~aaa~a-~L~~i~~~~~~~~~~~~~~~l~  388 (480)
                      +||++. .|+     ++| ++++++ ++++.+....    ...++++...-..++++ +|+...+.+..++..+..+++.
T Consensus       225 ~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~  304 (431)
T cd00617         225 YADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLG  304 (431)
T ss_pred             cCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            455544 233     344 788886 5888776421    22344443222333333 5553222233333333446666


Q ss_pred             HHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHH-HHHHHcCceeeccCc---------------CCCE
Q 011669          389 ERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM-DKMKEMGVLVGKGGF---------------YGNV  452 (480)
Q Consensus       389 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~~~---------------~~~~  452 (480)
                      +.|++.    ++....+..|.+++++...-.....+.......++ +.+.+.||.+..-|.               .-+.
T Consensus       305 ~~L~~~----G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~  380 (431)
T cd00617         305 DRLDEA----GVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELEL  380 (431)
T ss_pred             HHHHHC----CCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccce
Confidence            666665    33322334456677775431100000111234455 455677888643211               1257


Q ss_pred             EEEeCCC-CCCHHHHHHHHHHHHHHHhh
Q 011669          453 FRITPPL-CFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       453 iRi~p~~-~~t~~~id~~l~~l~~~l~~  479 (480)
                      +|+..|- ..|.+++|.+.++|..++++
T Consensus       381 ~rl~~prr~~t~~~~~~~~~~~~~~~~~  408 (431)
T cd00617         381 VRLAIPRRVYTQDHMDYVAAAVIALYER  408 (431)
T ss_pred             eEEeccccccCHHHHHHHHHHHHHHHhh
Confidence            9998885 77999999999999988764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.79  E-value=3.4e-17  Score=156.64  Aligned_cols=333  Identities=19%  Similarity=0.185  Sum_probs=199.8

Q ss_pred             EeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh
Q 011669          102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY  181 (480)
Q Consensus       102 lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~  181 (480)
                      +||-|...+.    .+|+++|||.+.-.  ......+.++...++.+++++.+..  ..++|+.|||.||..+|..... 
T Consensus         2 ~~f~SDn~~g----~~~~m~eam~~a~~--~~~~~YG~D~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~~-   72 (342)
T COG2008           2 IDFRSDNVAG----PTPEMREALAAANA--VGDDVYGEDPTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHCQ-   72 (342)
T ss_pred             CccccCccCC----CCHHHHHHHHhccc--cCCCCCCCCHHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHhcC-
Confidence            5777766653    68999999987543  1222344578888999999999964  7899999999999999986553 


Q ss_pred             cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEE
Q 011669          182 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFL  259 (480)
Q Consensus       182 ~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi  259 (480)
                       +.+.||+ ...-|-++..+-+..-   +      .++...+....      .++...+++++..+...  ....+..++
T Consensus        73 -~~~~vi~-~~~aHi~~~E~Ga~~~---~------~~~~~~~~~~g------~~Gklt~e~v~~~i~~~d~~~~~~~~~~  135 (342)
T COG2008          73 -PGESVIC-HETAHIYTDECGAPEF---F------GGGQKLPIVPG------ADGKLTPEDVEAAIRPDDIHHAPTPLAV  135 (342)
T ss_pred             -CCCeEEE-eccccceecccCcHHH---H------cCCceeccCCC------CCCCcCHHHHHHhhcCCCcccCCCceEE
Confidence             4444444 3444443332211100   0      11222222111      12222267888877631  223556666


Q ss_pred             EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC--ccccCCCcccccccCCCcceeeeccccccCccccccc-
Q 011669          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV-  336 (480)
Q Consensus       260 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg--fgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~-  336 (480)
                      .|..++++|.+ +|.++|++|.++|++||+.|+.|-+--.  .-..|   -....+....|+++|+-+-++|+|.|+|+ 
T Consensus       136 ~e~~~te~GtV-y~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg---~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~  211 (342)
T COG2008         136 LENTATEGGTV-YPLDELEAISAVCKEHGLPLHMDGARLANALVALG---VALKTIKSYVDSVSFCLTKGGGAPVGAIVF  211 (342)
T ss_pred             EeeccCCCcee-cCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC---CCHHHHHhhCCEEEEecccCCcceeeeEEE
Confidence            67666688876 6999999999999999999999964210  00011   01122334578887765555677888766 


Q ss_pred             cCHHHHHhhcC--CCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          337 TTPEIAEVLTR--RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       337 ~~~~~~~~l~~--~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                      +++++++.+..  ...++-+.-..+-.++++..|+.----...+|..++.++|.+.+.+.   .+.-...+...+++.+.
T Consensus       212 gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~---~G~~~~~~~~tN~vf~~  288 (342)
T COG2008         212 GNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAK---PGVKLAFPVETNMVFVR  288 (342)
T ss_pred             cCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhc---CCceeccCCcccEEEEE
Confidence            67788776643  22344444445555556665542111122344444566666665542   12222233566677666


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      +...       ..........+...|+++.+.+   ..+||..+..+|+++++++++.+++++
T Consensus       289 l~~~-------~i~~l~~~~~~~~~~~~~~~~~---~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         289 LPES-------AIEALRLAGALFYRGVLIGAHG---EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             CChH-------HHHHHHhhchhheeeeeccCCC---ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            6321       0122333444556666665432   479999999999999999999998765

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.78  E-value=2.8e-16  Score=161.64  Aligned_cols=335  Identities=13%  Similarity=0.081  Sum_probs=188.9

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHH-hcc--ccccccC--ChHHHHH----HHHHHHhCCCCCCEEEEeCCHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQ--HSTVLYL--NHAIADF----AEALASKMPGNLKVVFFTNSGTE  169 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~-~~~--~~~~~~~--~~~~~~l----~e~L~~~~~~~~~~v~f~~sGse  169 (480)
                      +.+|++.++...     -+|+|.+|+.+.+. +..  +....+.  .+...++    ++.+++.++.+...|+ ++||++
T Consensus        25 ~~~~~l~~~~n~-----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~-~~sgt~   98 (416)
T PRK00011         25 EEHIELIASENF-----VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQ-PHSGSQ   98 (416)
T ss_pred             hcCeeeecccCc-----CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeee-cCCchH
Confidence            455777665432     47999999877653 211  1111111  1223333    3477888876555454 467899


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      |+..+++...  .+++.|++..+.|.+..........        ...|...+.++... ..+..|    .++++++++.
T Consensus        99 al~~~l~~l~--~~gd~Vl~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~-~~~~~d----~~~l~~~i~~  163 (416)
T PRK00011         99 ANAAVYFALL--KPGDTILGMDLAHGGHLTHGSPVNF--------SGKLYNVVSYGVDE-ETGLID----YDEVEKLALE  163 (416)
T ss_pred             HHHHHHHHhc--CCCCEEEEeccccCCcccccccccc--------ccceeeEeecCcCc-ccCCcC----HHHHHHHHHh
Confidence            9999887663  3678899988887553221111000        00122222222110 012223    6778888863


Q ss_pred             cCCCceEEEEEc-ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eecccc
Q 011669          250 GTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGI  326 (480)
Q Consensus       250 ~~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~  326 (480)
                         .++++|++. ++   .|...+    +++|.++|++||+++|+||+|. +|..+...... ..+ ..|++  +++|++
T Consensus       164 ---~~~k~v~~~~~~---~~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~-~~~-~~di~~~S~~K~l  230 (416)
T PRK00011        164 ---HKPKLIIAGASA---YSRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPS-PVP-HADVVTTTTHKTL  230 (416)
T ss_pred             ---cCCCEEEECCCc---CCCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccCC-CCC-CCcEEEecCCcCC
Confidence               245566663 33   333333    8999999999999999999985 33221000001 111 34655  678998


Q ss_pred             ccCccccccccC-HHHHHhhcCCCccccCCCc-HHHHHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669          327 GNGIPLGAVVTT-PEIAEVLTRRNYFNTFGGN-PVCTAAG-HAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGII  401 (480)
Q Consensus       327 g~G~pig~v~~~-~~~~~~l~~~~~~~t~~~~-~~~~aaa-~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~  401 (480)
                       +|.+.|+++++ +++++.+......++++.. ...+++. .+.++.+.+  +++.++.+++.+++++.|+++  .+...
T Consensus       231 -~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~  307 (416)
T PRK00011        231 -RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER--GFRVV  307 (416)
T ss_pred             -CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCeee
Confidence             56788999996 6888777543322233322 2233332 233343322  346677777888888887764  22111


Q ss_pred             eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------c-CCCEEEEeCC----CCCCHHHHHHH
Q 011669          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------F-YGNVFRITPP----LCFTKEDADYL  469 (480)
Q Consensus       402 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~-~~~~iRi~p~----~~~t~~~id~~  469 (480)
                      . -.....++++.+....       .....+.+.|.++||.+..+.       . ..+.+|++..    ..+|++|++++
T Consensus       308 ~-~~~~~~~~~i~~~~~~-------~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l  379 (416)
T PRK00011        308 S-GGTDNHLVLVDLRSKG-------LTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEI  379 (416)
T ss_pred             e-cCCCCeEEEEeCcccC-------CCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHH
Confidence            1 0123356666653211       113567888889999997321       1 1346898542    25679999999


Q ss_pred             HHHHHHHHh
Q 011669          470 VDVMDYSLS  478 (480)
Q Consensus       470 l~~l~~~l~  478 (480)
                      ++.|++++.
T Consensus       380 ~~~l~~~~~  388 (416)
T PRK00011        380 AELIADVLD  388 (416)
T ss_pred             HHHHHHHHh
Confidence            999998865

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.78  E-value=2.2e-16  Score=155.52  Aligned_cols=323  Identities=18%  Similarity=0.227  Sum_probs=211.6

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y  194 (480)
                      .+|+|++|+.++.-  .|.+..| .....++.+.|...+.... +.+++..|||-|+|+|+.....  ++++|++..++.
T Consensus        16 v~~~V~~am~~~~~--~h~s~~F-~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~--pgdkVLv~~nG~   90 (383)
T COG0075          16 VPPRVLLAMARPMV--GHRSPDF-VGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE--PGDKVLVVVNGK   90 (383)
T ss_pred             CCHHHHHHhcCCCC--CCCCHHH-HHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC--CCCeEEEEeCCh
Confidence            46899998876542  2443333 4667788888888887553 6677889999999999986544  688999999998


Q ss_pred             ccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCC
Q 011669          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (480)
Q Consensus       195 hG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  274 (480)
                      +|....-+.-..           |.....+...+..+++      .+++++++++  .+++++|.+-..-.++|+..|  
T Consensus        91 FG~R~~~ia~~~-----------g~~v~~~~~~wg~~v~------p~~v~~~L~~--~~~~~~V~~vH~ETSTGvlnp--  149 (383)
T COG0075          91 FGERFAEIAERY-----------GAEVVVLEVEWGEAVD------PEEVEEALDK--DPDIKAVAVVHNETSTGVLNP--  149 (383)
T ss_pred             HHHHHHHHHHHh-----------CCceEEEeCCCCCCCC------HHHHHHHHhc--CCCccEEEEEeccCcccccCc--
Confidence            887665443321           2212111112222222      6889999984  236667777666677898887  


Q ss_pred             ChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCc----
Q 011669          275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY----  350 (480)
Q Consensus       275 ~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~----  350 (480)
                        +++|.++|++||+++|+|-|-+ +|  | ..+-.+.||+..-+..--|++++.-.+|.+..+++..+.+....+    
T Consensus       150 --l~~I~~~~k~~g~l~iVDaVsS-~G--g-~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~y  223 (383)
T COG0075         150 --LKEIAKAAKEHGALLIVDAVSS-LG--G-EPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFY  223 (383)
T ss_pred             --HHHHHHHHHHcCCEEEEEeccc-CC--C-cccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCcee
Confidence              9999999999999999999976 54  3 334456666544333455999975567899999998887764321    


Q ss_pred             -------------ccc-CCCcHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHhHHhcCceeeE-eccceeEE
Q 011669          351 -------------FNT-FGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLG  412 (480)
Q Consensus       351 -------------~~t-~~~~~~~~aaa~a~L~~i~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~  412 (480)
                                   ..+ |..+.....+..++|+.+.+|.   ..++-+++.+.++++++++  .+....+. .-......
T Consensus       224 lDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al--Gl~~~~~~~~~s~tvta  301 (383)
T COG0075         224 LDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL--GLELFADPERRSPTVTA  301 (383)
T ss_pred             ecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCccccCcccCCCceEE
Confidence                         122 2333344555668898888764   4556666777777777776  22222211 11112222


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccC--cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGG--FYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~--~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      +..        |.......+...++ +.|+.+..+-  ..+..+||...-..+.+++..++.+|+.++.++
T Consensus       302 ~~~--------P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~  364 (383)
T COG0075         302 IKV--------PEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALREL  364 (383)
T ss_pred             EEC--------CCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence            322        22222223333444 5588887652  235789999888899999999999999998763

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.78  E-value=2.5e-17  Score=166.36  Aligned_cols=293  Identities=16%  Similarity=0.122  Sum_probs=185.2

Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ....+.++...+|+++|+++.+.  +.+++++||++|+..+++....  +++.|++..+.|++.........        
T Consensus        33 ~y~r~~~p~~~~le~~la~l~g~--~~a~~~~sG~~Ai~~~l~~l~~--~gd~Vl~~~~~y~~~~~~~~~~~--------  100 (369)
T cd00614          33 IYSRIGNPTVDALEKKLAALEGG--EAALAFSSGMAAISTVLLALLK--AGDHVVASDDLYGGTYRLFERLL--------  100 (369)
T ss_pred             eeECCCChhHHHHHHHHHHHHCC--CCEEEEcCHHHHHHHHHHHHcC--CCCEEEECCCCcchHHHHHHHHH--------
Confidence            34556789999999999999864  5678889999999999987643  67789998888876442211110        


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                       ...|+....++.       +|    .+++++.++    +++++|++|+++|++|.+.+    +++|.++|++||+++|+
T Consensus       101 -~~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~liv  160 (369)
T cd00614         101 -PKLGIEVTFVDP-------DD----PEALEAAIK----PETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVV  160 (369)
T ss_pred             -hhcCeEEEEeCC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEE
Confidence             011333322221       12    466777764    26889999999999998876    99999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCH-HHHHhhcCCCccccCCCcHHHHHHHHHHH
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~a~L  368 (480)
                      |+++... ...      ...+...|++  +++|.+++ | .+.|++++++ ++++.+...........+|+.+++++..|
T Consensus       161 D~t~~~~-~~~------~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l  233 (369)
T cd00614         161 DNTFATP-YLQ------RPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGL  233 (369)
T ss_pred             ECCCcch-hcC------ChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCC
Confidence            9998532 111      1112345666  78899985 4 7899999987 78777764332233456677777766666


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHH----hcCcee----------eEeccceeEEEEEecCCCcCCCCHHHHHHHHH
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKD----KYGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMD  434 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~  434 (480)
                      +.+  +...++..++..++.+.|++...    .||...          ...+.|.++.+++..       ....+..+.+
T Consensus       234 ~tl--~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~-------~~~~~~~f~~  304 (369)
T cd00614         234 KTL--PLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG-------GLEAAKKFLN  304 (369)
T ss_pred             CCH--HHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC-------CHHHHHHHHH
Confidence            532  23455556666666666665321    012110          123568888888742       1223444544


Q ss_pred             HHHHcCceeecc-------------------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          435 KMKEMGVLVGKG-------------------------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       435 ~l~~~Gv~v~~~-------------------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .|.--.+...-|                         |...+.+||+..+    |+++.+++-|+++++
T Consensus       305 ~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al~  369 (369)
T cd00614         305 ALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQALK  369 (369)
T ss_pred             cCCcceEcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhhC
Confidence            443211111101                         1113579999665    678888888887763

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.77  E-value=3.8e-16  Score=159.93  Aligned_cols=321  Identities=14%  Similarity=0.100  Sum_probs=187.0

Q ss_pred             CCHHHHHHHHHHH-Hhccccc--ccc--CChHHHHHHH----HHHHhCCCCCCEE-EEeCCHHHHHHHHHHHHHhhcCCc
Q 011669          116 CHPYVVDSIVNQI-KRIQHST--VLY--LNHAIADFAE----ALASKMPGNLKVV-FFTNSGTEANELAIMMARLYTGCN  185 (480)
Q Consensus       116 ~~p~v~~A~~~~~-~~~~~~~--~~~--~~~~~~~l~e----~L~~~~~~~~~~v-~f~~sGseA~~~Alk~ar~~~~~~  185 (480)
                      -||+|.+|+...+ .+.....  ..+  .++...+|.+    +++++++.  +.+ ++++||+.||..++....  .+++
T Consensus        40 ~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~--~~alv~~~SG~~A~~~~l~al~--~~GD  115 (416)
T PRK13034         40 TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGC--DYANVQPHSGSQANGAVYLALL--KPGD  115 (416)
T ss_pred             CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCC--CceEEecCCcHHHHHHHHHHhc--CCCC
Confidence            4799999999985 5543211  111  1577788887    99999864  345 567999999999998653  3677


Q ss_pred             eEEEEcCCcccc-cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEE-ccc
Q 011669          186 DIISLRNAYHGN-AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS-ESI  263 (480)
Q Consensus       186 ~ii~~~~~yhG~-~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~-epi  263 (480)
                      .|++...+|.+. ..+...... ..+        .....+... ...+..|    .+++++.++..   ++++|++ +++
T Consensus       116 ~Vl~~~~~~~~~~~~g~~~~~~-~~~--------~~~~~~~~~-~~~~~~d----~~~le~~l~~~---~~klVi~~~~~  178 (416)
T PRK13034        116 TILGMSLSHGGHLTHGAKVSLS-GKW--------YNAVQYGVD-RLTGLID----YDEVEELAKEH---KPKLIIAGFSA  178 (416)
T ss_pred             EEEEcCccceeeeecCCcceec-cce--------eeeEEcccc-cccCCcC----HHHHHHHHhhc---CCeEEEECCCc
Confidence            888877766441 111111000 000        000000000 0011123    56788777532   4567777 455


Q ss_pred             CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccccccCH-H
Q 011669          264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTP-E  340 (480)
Q Consensus       264 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~-~  340 (480)
                      .+   ...+    +++|.++|++||+++|+|++|+ +|-.+.... ....+ ..|++  +++|+++|+. -|++++++ +
T Consensus       179 ~g---~~~d----l~~l~~la~~~g~~livD~Aha-~G~~~~g~~-~~~~~-~~Di~~~s~~K~l~g~~-GG~v~~~~~~  247 (416)
T PRK13034        179 YP---RELD----FARFREIADEVGALLMVDMAHI-AGLVAAGEH-PNPFP-HAHVVTTTTHKTLRGPR-GGMILTNDEE  247 (416)
T ss_pred             cc---cccC----HHHHHHHHHHcCCEEEEeCccc-ccCcccCCC-CCCCC-CceEEEEeCcccCCCCC-CeEEEECcHH
Confidence            43   3334    8999999999999999999986 554431110 11111 25665  5679996533 25566654 4


Q ss_pred             HHHhhcCCCccccCC-CcHHHHH-HHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEe
Q 011669          341 IAEVLTRRNYFNTFG-GNPVCTA-AGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV  416 (480)
Q Consensus       341 ~~~~l~~~~~~~t~~-~~~~~~a-aa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~  416 (480)
                      +.+.+......+..+ .+|...+ ++++.++.++.  .++.+++.++.++++++|.++  .++.... .....+..+.+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~--G~~~~~~-~~~t~i~~v~~~  324 (416)
T PRK13034        248 IAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER--GYDLVSG-GTDNHLLLVDLR  324 (416)
T ss_pred             HHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc--CCEeccC-CCCCcEEEEEcC
Confidence            545444322222112 2233333 33444554432  345788888999999988765  3322211 123445555553


Q ss_pred             cCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------c-CCCEEEEeCCC----CCCHHHHHHHHHHHHHHHh
Q 011669          417 TDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------F-YGNVFRITPPL----CFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~-~~~~iRi~p~~----~~t~~~id~~l~~l~~~l~  478 (480)
                      ....       ....+.+.|.++||++...+       + ....+|++++.    .++++|++++++.|++++.
T Consensus       325 ~~~~-------~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~  391 (416)
T PRK13034        325 PKGL-------SGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD  391 (416)
T ss_pred             CCCC-------CHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            3211       13456678888999997421       0 13579999888    6779999999999998875

>PLN02242 methionine gamma-lyase

Probab=99.77  E-value=5.2e-17  Score=165.78  Aligned_cols=298  Identities=15%  Similarity=0.099  Sum_probs=183.4

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..++.++...+|+++|+++.+.  +.+++++||++|+..++.....  +++.|++..+.|.+..........        
T Consensus        70 Y~r~~~Pt~~~LE~~lA~l~g~--~~~l~~~sG~~Ai~~al~al~~--~GD~Vl~~~~~Y~~~~~~~~~~~~--------  137 (418)
T PLN02242         70 YSRHFNPTVLNLGRQMAALEGT--EAAYCTASGMSAISSVLLQLCS--SGGHVVASNTLYGGTHALLAHFLP--------  137 (418)
T ss_pred             ccCCCChhHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHHhC--CCCEEEEcCCcHHHHHHHHHHhhh--------
Confidence            4556789999999999999853  6678999999999999986643  678899888887543222111000        


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+....++.       .|    .++++++++   ++++++|++|.++|++|.+.+    +++|.++|++||+++|+|
T Consensus       138 ~~~G~~~~~~d~-------~d----~e~l~~~i~---~~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livD  199 (418)
T PLN02242        138 RKCNITTTFVDI-------TD----LEAVKKAVV---PGKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVD  199 (418)
T ss_pred             hccCceEEEcCC-------CC----HHHHHHhcC---cCCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEE
Confidence            001333222211       12    567777774   225889999999999998875    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCcceeeecccccc-Ccc-ccccccCHHHHHhhcCCCcc--ccCCCcHHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIP-LGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGHAVLKV  370 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~p-ig~v~~~~~~~~~l~~~~~~--~t~~~~~~~~aaa~a~L~~  370 (480)
                      |+|+.+.. .     ...++...-+.++||.+++ |.+ .||+++++++++.+......  ..++..+..+.|++..+..
T Consensus       200 ea~~~~~~-~-----~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l  273 (418)
T PLN02242        200 NTFAPMVL-S-----PARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERL  273 (418)
T ss_pred             CCCCccCC-C-----HHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCC
Confidence            99974422 1     1122433333478999985 677 58999999988877644322  2234444455555444331


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHh--cCce----------eeE---eccceeEEEEEecCCCcCCCCHHHHHHHHHH
Q 011669          371 IQKDKLQNNAHVVGSYLKERLTALKDK--YGII----------GDV---RGRGFLLGVEFVTDRQLKTPAKAETLYIMDK  435 (480)
Q Consensus       371 i~~~~~~~~~~~~~~~l~~~L~~l~~~--~~~~----------~~v---~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  435 (480)
                      -.-+...++..++.+++.+.|++...+  +|..          ...   .|.|.|+.|++..        ...+..+.+.
T Consensus       274 ~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~--------~~~~~~f~~~  345 (418)
T PLN02242        274 PHLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDT--------EERANRLMRY  345 (418)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECC--------HHHHHHHHHH
Confidence            111234456667777777777765211  1211          012   3678889999831        1234556665


Q ss_pred             HHHc----CceeeccC-------------------------cCCCEEEEeCCCCCCHH-HHHHHHHHHHHHHhhC
Q 011669          436 MKEM----GVLVGKGG-------------------------FYGNVFRITPPLCFTKE-DADYLVDVMDYSLSKM  480 (480)
Q Consensus       436 l~~~----Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~-~id~~l~~l~~~l~~~  480 (480)
                      +.--    .+.+..|+                         ...+.+||+..+    | +.|.+++-|+++|++|
T Consensus       346 l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~~dli~dl~~al~~~  416 (418)
T PLN02242        346 LQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGY----TGTLEQRWSQFEKALSAM  416 (418)
T ss_pred             hhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecC----CCCHHHHHHHHHHHHHHh
Confidence            5411    11111111                         112578998544    4 3677777777777654

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.76  E-value=2.5e-16  Score=158.20  Aligned_cols=302  Identities=18%  Similarity=0.174  Sum_probs=185.8

Q ss_pred             HHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccc
Q 011669          122 DSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT  201 (480)
Q Consensus       122 ~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~  201 (480)
                      +++.+.+....+    +..+...+++++|+++++.  +.+++++||++|++.+++..+. .+++.|++...+||+.....
T Consensus         3 ~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~--~~~~~~~sgt~al~~~l~~l~~-~~gd~vl~~~~~~~~~~~~~   75 (352)
T cd00616           3 EAVEEVLDSGWL----TLGPKVREFEKAFAEYLGV--KYAVAVSSGTAALHLALRALGI-GPGDEVIVPSFTFVATANAI   75 (352)
T ss_pred             HHHHHHHHcCCc----cCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcCC-CCCCEEEeCCcchHHHHHHH
Confidence            345554544322    3467889999999999963  5788999999999999987632 35688999999998764433


Q ss_pred             cccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHH
Q 011669          202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVY  281 (480)
Q Consensus       202 ~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~  281 (480)
                      ...             |+....++... ..+..|    .+++++.++    +++++|++.++   .|...+    +++|.
T Consensus        76 ~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~~---~G~~~~----~~~i~  126 (352)
T cd00616          76 LLL-------------GATPVFVDIDP-DTYNID----PELIEAAIT----PRTKAIIPVHL---YGNPAD----MDAIM  126 (352)
T ss_pred             HHc-------------CCeEEEEecCC-CcCCcC----HHHHHHhcC----cCCeEEEEECC---CCCcCC----HHHHH
Confidence            221             22222222111 112223    567777663    36777777653   465544    89999


Q ss_pred             HHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec----cccccCccccccccC-HHHHHhhcCCC-------
Q 011669          282 KSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRRN-------  349 (480)
Q Consensus       282 ~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~~-------  349 (480)
                      ++|+++|+++|+|++|+ +|...    .....+...|+.++|    |.+++| +.|+++.+ +++.+.+....       
T Consensus       127 ~l~~~~~i~li~D~a~~-~g~~~----~~~~~~~~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~  200 (352)
T cd00616         127 AIAKRHGLPVIEDAAQA-LGATY----KGRKVGTFGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRD  200 (352)
T ss_pred             HHHHHcCCeEEEECCCC-CCCeE----CCEEcccCcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCC
Confidence            99999999999999997 43221    111123335666665    999544 45677765 56665543210       


Q ss_pred             --------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe---ccceeEEEEEecC
Q 011669          350 --------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR---GRGFLLGVEFVTD  418 (480)
Q Consensus       350 --------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~---g~g~~~~i~~~~~  418 (480)
                              .+.++..+++.++.++..++.+  +.+.++.+++.+++++.|.++. ....+....   ....++.+.+...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  277 (352)
T cd00616         201 RFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLP-GIRLPDVPPGVKHSYHLYVIRLDPE  277 (352)
T ss_pred             CCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCCCCceeeEEEEEEECCc
Confidence                    0123345677777777666543  4566777778888888887642 111221111   1122333333210


Q ss_pred             CCcCCCCHHHHHHHHHHHHHcCceeeccCc------------------C-------CCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          419 RQLKTPAKAETLYIMDKMKEMGVLVGKGGF------------------Y-------GNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       419 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------------------~-------~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                            .......+.+.|.++||.++....                  .       .+.+|+.+....|++||+.++++|
T Consensus       278 ------~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l  351 (352)
T cd00616         278 ------AGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEAL  351 (352)
T ss_pred             ------CCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHh
Confidence                  011246788899999997753210                  0       157999999999999999999887


Q ss_pred             H
Q 011669          474 D  474 (480)
Q Consensus       474 ~  474 (480)
                      +
T Consensus       352 ~  352 (352)
T cd00616         352 R  352 (352)
T ss_pred             C
Confidence            4

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.76  E-value=8.3e-17  Score=148.40  Aligned_cols=330  Identities=20%  Similarity=0.194  Sum_probs=208.4

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar  179 (480)
                      +..|+-+-..+.    .-.++++||.++.-..   .-.+..+...+|.+..++.++  .+.-+|+.|||..|..||+.-.
T Consensus        22 ~~vDLRSDTvT~----PTdeMr~am~eA~vgD---dVyGeD~tt~rLE~~vA~l~G--KEAgLFv~SGTmgNllaIm~Hc   92 (384)
T KOG1368|consen   22 RSVDLRSDTVTV----PTDEMRRAMAEASVGD---DVYGEDPTTNRLEQRVAELFG--KEAGLFVPSGTMGNLLAIMVHC   92 (384)
T ss_pred             eccccccccccC----ChHHHHHHHhhcccCc---ccccCCccHHHHHHHHHHHhC--ccceeeecccccccHHHHHHHh
Confidence            456666655544    4467888887754321   112346777889999999984  4677999999999999999766


Q ss_pred             hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc----CCCce
Q 011669          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG----TSGHV  255 (480)
Q Consensus       180 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~----~~~~~  255 (480)
                      ...|...|+-....-|-|..+.++.-+           |+...++.+.      +|+-..++++|+.+...    +...+
T Consensus        93 ~~rg~eii~gd~~HI~~~E~gg~s~l~-----------gv~~~tv~~e------~dgtm~ledIe~~ir~~~GD~H~p~T  155 (384)
T KOG1368|consen   93 HQRGSEIIVGDRAHIHRYEQGGISQLA-----------GVHVRTVKNE------NDGTMDLEDIEAAIRVPKGDCHMPPT  155 (384)
T ss_pred             cCCCceEEeccchheeehhccChhhhc-----------cceeEeeeeC------CCCeeeHHHHHHhhcCCCCCccCCCc
Confidence            543433333334444545444444332           3333332221      22222378899888621    23368


Q ss_pred             EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcc---ccCCCcccccccCCCcce--eeeccccccCc
Q 011669          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA---RTGSHFWGFEAHGVVPDI--VTMAKGIGNGI  330 (480)
Q Consensus       256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg---r~G~~~~~~~~~~~~pDi--vt~sK~~g~G~  330 (480)
                      +.|.+|..++..|....|-+|+.++.++|++||+-|+.|-+-- |-   -.|   -+...+.-..|.  +|+||++|+  
T Consensus       156 ~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~NAavasg---V~vk~i~~~fDSVsiCLSKglgA--  229 (384)
T KOG1368|consen  156 KLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-FNAAVASG---VPVKKICSAFDSVSICLSKGLGA--  229 (384)
T ss_pred             eEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-hhHHHHcC---CCHHHHHHhhhhhhhhhhccCCC--
Confidence            9999999776655455699999999999999999999996432 10   001   001111123344  489999976  


Q ss_pred             ccc-ccccCHHHHHhhcC--CCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC-ceeeEe-
Q 011669          331 PLG-AVVTTPEIAEVLTR--RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVR-  405 (480)
Q Consensus       331 pig-~v~~~~~~~~~l~~--~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~-  405 (480)
                      |+| .+++++++++..+.  ...++.+-...+-++|++-+|+.  ....+..-.+....+.+.+++.    + +...+. 
T Consensus       230 PVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~~~~----~~i~v~v~a  303 (384)
T KOG1368|consen  230 PVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYINTP----EEIRVEVPA  303 (384)
T ss_pred             CcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhccc----cceeeecch
Confidence            556 46678888765442  12344455556777777777752  2234444455555555555432    2 223343 


Q ss_pred             ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      -...|..+.+...+       ..++.+++.+.+.||++.++.  ...+||.....+|+++++.++..|.+.
T Consensus       304 ~etNiv~~~l~q~~-------~~~~~l~~~~~k~gi~lm~~~--s~r~Rivlh~Qvt~~~ve~~~~~~~k~  365 (384)
T KOG1368|consen  304 VETNIVNMVLCQAR-------LTAEELCKFLEKNGILLMGGA--SRRIRIVLHHQVTDEDVEYVKSVLSKK  365 (384)
T ss_pred             hhcceeeeeccccc-------CCHHHHHHHHHHCCeEEeecc--ccceEEEEEEecCHHHHHHHHHHHHHH
Confidence            44566666664432       236788999999999998765  345899999999999999999999543

>PRK07049 methionine gamma-lyase; Validated

Probab=99.74  E-value=2.9e-16  Score=160.87  Aligned_cols=223  Identities=14%  Similarity=0.067  Sum_probs=146.1

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      .++|.++....|.++|+++.+.  +.+++++||++|+..++.....  +++.|++.++.|.+.........         
T Consensus        77 y~R~~~Pt~~~Le~~lA~leg~--~~~iv~~sG~~Ai~~~l~al~~--~Gd~Vv~~~p~Y~~~~~~~~~~l---------  143 (427)
T PRK07049         77 YSRFNHPNSEIVEDRLAVYEGA--ESAALFSSGMSAIATTLLAFVR--PGDVILHSQPLYGGTETLLAKTF---------  143 (427)
T ss_pred             ccCCCCcCHHHHHHHHHHHhCC--CcEEEEccHHHHHHHHHHHHhC--CCCEEEEcCCCcccHHHHHHHHH---------
Confidence            4567888899999999999853  4688999999999988876544  67889999999987644321110         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc-CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH------h
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK------A  287 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~------~  287 (480)
                      ...|+..+.+++.      .|    .+++++.++.. ..+++++|++|..+|++|.+..    +++|.++|++      +
T Consensus       144 ~~~Gi~~v~~~~~------~d----~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d----~~~l~~la~~~~~~~~~  209 (427)
T PRK07049        144 RNFGVGAVGFADG------LS----EAAIGAAAEAAAAKGRVSLILIETPANPTNSLVD----VAAVRRVADAIEARQGH  209 (427)
T ss_pred             HhcCcEEEEEeCC------CC----HHHHHHHHHhhccCCCceEEEEECCCCCCCcccC----HHHHHHHHHHhhhcccC
Confidence            0124433333321      22    34555555321 1236889999999999998865    6666666665      8


Q ss_pred             CCEEEEcccccCccccCCCcccccccCCCccee--eeccccc--cCccccccccCHHHHHhhcCCCccccCCCcHHHHHH
Q 011669          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIG--NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA  363 (480)
Q Consensus       288 gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g--~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa  363 (480)
                      ++++|+||++.++....  .  . .++  .|++  ++||.++  +|+++||+++++++++.+.........+.+|+.+.+
T Consensus       210 ~~~vvvDety~~~~~~~--p--l-~~g--~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l  282 (427)
T PRK07049        210 RPIIACDNTLLGPVFQK--P--L-EHG--ADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWM  282 (427)
T ss_pred             CCEEEEECCccccccCC--c--c-ccC--CCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            99999999986542211  1  1 123  3554  7999999  479999999999988877653322334467887777


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 011669          364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       364 a~a~L~~i~~~~~~~~~~~~~~~l~~~L~~  393 (480)
                      ++..|+.+  ....++..+....+.+.|++
T Consensus       283 ~~r~L~tl--~~R~~~~~~~a~~la~~L~~  310 (427)
T PRK07049        283 LGRSLETL--VLRMERANRNARAVAEFLRD  310 (427)
T ss_pred             HHcCCChH--HHHHHHHHHHHHHHHHHHHh
Confidence            77666543  22233344445555555544

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.74  E-value=1.8e-16  Score=159.34  Aligned_cols=310  Identities=14%  Similarity=0.124  Sum_probs=180.7

Q ss_pred             CCCCHHHHHHHHHHHHhccccccc--c-----CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh--cCC
Q 011669          114 GHCHPYVVDSIVNQIKRIQHSTVL--Y-----LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--TGC  184 (480)
Q Consensus       114 Gh~~p~v~~A~~~~~~~~~~~~~~--~-----~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~--~~~  184 (480)
                      |..++.|.+++.+.+.........  +     ..+...+++++|+++++.+.++|+|++|+++|++.+++.....  .++
T Consensus         8 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g   87 (353)
T TIGR03235         8 TPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKG   87 (353)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence            456799999999887543211111  0     1134678999999999877778999999999999999866432  122


Q ss_pred             -ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEccc
Q 011669          185 -NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI  263 (480)
Q Consensus       185 -~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi  263 (480)
                       +.|++. ...|...........         ..|+....++....  +..|    .+++++.++    +++++|+++.+
T Consensus        88 ~~~vi~~-~~~~~s~~~~~~~~~---------~~G~~v~~v~~~~~--~~~d----~~~l~~~l~----~~~~lv~~~~~  147 (353)
T TIGR03235        88 KKHIITS-AIEHPAVLEPIRALE---------RNGFTVTYLPVDES--GRID----VDELADAIR----PDTLLVSIMHV  147 (353)
T ss_pred             CCeeeEc-ccccHHHHHHHHHHH---------hcCCEEEEEccCCC--CcCC----HHHHHHhCC----CCCEEEEEEcc
Confidence             445554 444443222221110         01333333332211  1123    567777764    35788999999


Q ss_pred             CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHH
Q 011669          264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEI  341 (480)
Q Consensus       264 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~  341 (480)
                      ++++|.+.+    +++|.++|++||+++|+|++|. +|...     ++.....+|++++|  |.+| ...+|+++++++.
T Consensus       148 ~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~~-----~~~~~~~~D~~~~s~~K~~g-p~g~g~l~~~~~~  216 (353)
T TIGR03235       148 NNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKIT-----VDLSADRIDLISCSGHKIYG-PKGIGALVIRKRG  216 (353)
T ss_pred             cCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCcc-----ccccccCCCEEEeehhhcCC-CCceEEEEEccCc
Confidence            999999987    9999999999999999999986 44321     22223357888777  9754 2347889888874


Q ss_pred             HHh--hcCCCc-------cccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe-ccce
Q 011669          342 AEV--LTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-GRGF  409 (480)
Q Consensus       342 ~~~--l~~~~~-------~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g~  409 (480)
                      ...  +.+...       ......|+...++..++|+.+.+  ++..++.+++.++++++|++.  .+..+.... ....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~--g~~~~~~~~~~~~~  294 (353)
T TIGR03235       217 KPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL--GVKLNGDPAETIPH  294 (353)
T ss_pred             ccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC--CeEEeCCcccccCC
Confidence            322  221101       11223445556666677776543  355667777777777776552  111111111 1122


Q ss_pred             eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCC------CEEEEeCCCCCCHHHHHH
Q 011669          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG------NVFRITPPLCFTKEDADY  468 (480)
Q Consensus       410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~------~~iRi~p~~~~t~~~id~  468 (480)
                      +..+.+.  .       .....+.+.|.+ ||.+.+|....      ..+|.+  +..+++++..
T Consensus       295 i~~~~~~--~-------~~~~~v~~~L~~-~i~v~~g~~~~~~~~~~~~~l~~--~g~~~~~~~~  347 (353)
T TIGR03235       295 ILNFSID--G-------VNSEALIVNLRA-DAAVSTGSACSSSKYEPSHVLQA--MGLDTDRARG  347 (353)
T ss_pred             EEEEEeC--C-------cCHHHHHHHHhC-CeEEEchhhcCCCCCCCCHHHHH--cCCCHHHhCc
Confidence            3333321  1       124567777754 89998763221      134444  5566655543

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.74  E-value=2.4e-15  Score=156.14  Aligned_cols=286  Identities=20%  Similarity=0.235  Sum_probs=169.5

Q ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEe
Q 011669          143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA  222 (480)
Q Consensus       143 ~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~  222 (480)
                      ..++.+.++++++.+.+++.+++||+++++.++...+ ..++++|++.++.|.. ....+.....        ..|....
T Consensus       114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~-~~~g~~Vlv~~~~~~~-~~~~~~~~~~--------~~G~~~~  183 (447)
T PRK00451        114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAVR-ITKRKKVLVSGAVHPE-YREVLKTYLK--------GQGIEVV  183 (447)
T ss_pred             HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHH-hcCCCEEEEeCccCHH-HHHHHHHHHH--------hCCcEEE
Confidence            4455577789988777789999999998887776443 3366788887765533 3322221100        0122222


Q ss_pred             cCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE--cccccCc
Q 011669          223 LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA--DEVQAGF  300 (480)
Q Consensus       223 ~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~--DEv~tgf  300 (480)
                      .+|....   ..|    .+++++.++    +++++|++... +++|.+.+    +++|.++|+++|+++|+  |.+..|+
T Consensus       184 ~v~~~~~---~~d----~~~l~~~i~----~~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~  247 (447)
T PRK00451        184 EVPYEDG---VTD----LEALEAAVD----DDTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL  247 (447)
T ss_pred             EecCCCC---CCC----HHHHHHhcC----CCeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc
Confidence            2222111   112    577777774    36778777765 66888865    99999999999999998  6553221


Q ss_pred             cccCCCcccccccCCCcceee-----eccccc-cCccccccccCHHHHHhhcCC--------------------------
Q 011669          301 ARTGSHFWGFEAHGVVPDIVT-----MAKGIG-NGIPLGAVVTTPEIAEVLTRR--------------------------  348 (480)
Q Consensus       301 gr~G~~~~~~~~~~~~pDivt-----~sK~~g-~G~pig~v~~~~~~~~~l~~~--------------------------  348 (480)
                        ..    ...  ....|+++     |||.+. +|+++|++++++++++.+...                          
T Consensus       248 --~~----~~~--~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  319 (447)
T PRK00451        248 --LK----PPG--EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIR  319 (447)
T ss_pred             --CC----Ccc--cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccc
Confidence              11    011  23456664     566665 678999999999988774211                          


Q ss_pred             --CccccCCCcH-HHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE--EEEecCCC
Q 011669          349 --NYFNTFGGNP-VCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG--VEFVTDRQ  420 (480)
Q Consensus       349 --~~~~t~~~~~-~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~--i~~~~~~~  420 (480)
                        ....+++.+. +...++.++|+.+.++   +..++..++.++++++|+++    +.+... ..+.+..  +.+  +  
T Consensus       320 ~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~g~~~~-~~~~~~~~~v~~--~--  390 (447)
T PRK00451        320 REKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEI----GGVELF-DGPFFNEFVVRL--P--  390 (447)
T ss_pred             cccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc----CCEEec-CCCeEEEEEEec--C--
Confidence              0111222222 2213333345444332   34455566666666666553    322222 2222222  222  1  


Q ss_pred             cCCCCHHHHHHHHHHHHHcCceee-ccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          421 LKTPAKAETLYIMDKMKEMGVLVG-KGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       421 ~~~~~~~~~~~~~~~l~~~Gv~v~-~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                          .  ...++.+.|.++|+... ++..+    .+++|++++..+|+++++++++.|++++
T Consensus       391 ----~--~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        391 ----K--PAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             ----C--CHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                0  14678899999988743 11111    3689999988899999999999999865

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.73  E-value=3.6e-16  Score=158.33  Aligned_cols=242  Identities=17%  Similarity=0.183  Sum_probs=151.1

Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ...+|.++...+|+++|++..+.  +.+++++||++|+..+++....  ++++||+..+.| |.+...+...        
T Consensus        47 ~y~r~~~p~~~~le~~la~l~g~--~~~~~~~sG~~Ai~~al~al~~--~Gd~Vl~~~~~~-~~t~~~~~~~--------  113 (380)
T TIGR01325        47 VYSRYANPTVAAFEERIAALEGA--ERAVATATGMSAIQAALMTLLQ--AGDHVVASRSLF-GSTVGFISEI--------  113 (380)
T ss_pred             ceecCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhC--CCCEEEEecCCc-chHHHHHHHH--------
Confidence            34567788899999999999854  5678999999999999976533  567788766544 4433222110        


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                      ....|+....++.       +|    .+++++.++    +++++|++|.++++.|.+.+    +++|.++|+++|+++|+
T Consensus       114 ~~~~g~~v~~v~~-------~d----~~~l~~~i~----~~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~liv  174 (380)
T TIGR01325       114 LPRFGIEVSFVDP-------TD----LNAWEAAVK----PNTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVV  174 (380)
T ss_pred             HHHhCCEEEEECC-------CC----HHHHHHhcC----CCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEE
Confidence            0011333222221       12    456766664    36789999998888888876    99999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCccee--eecccccc-Cccc-cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pi-g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      ||+|..+. .. .     .....+|++  +++|.+++ |.++ |++++++++++.+...........+|..++.++..++
T Consensus       175 D~a~~~~~-~~-~-----pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~  247 (380)
T TIGR01325       175 DNVFATPV-LQ-Q-----PLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLE  247 (380)
T ss_pred             ECCCcccc-cC-C-----chhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccC
Confidence            99986321 11 1     112346777  47899996 6666 6788888887766543211122234565555555555


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhH--H--hcCce----------eeEeccceeEEEEEe
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALK--D--KYGII----------GDVRGRGFLLGVEFV  416 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~--~--~~~~~----------~~v~g~g~~~~i~~~  416 (480)
                      .+..  ..++..+...++.+.|++..  +  .||..          ....|.|.|+.|++.
T Consensus       248 tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~  306 (380)
T TIGR01325       248 TLSL--RMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA  306 (380)
T ss_pred             cHHH--HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence            4432  34444555555555555421  0  02211          012467888899884

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.72  E-value=2.1e-15  Score=156.28  Aligned_cols=340  Identities=14%  Similarity=0.070  Sum_probs=195.0

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhc---cccccccC--C---hHHHH-HHHHHHHhCCCCCCEEEEe---CCH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI---QHSTVLYL--N---HAIAD-FAEALASKMPGNLKVVFFT---NSG  167 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~---~~~~~~~~--~---~~~~~-l~e~L~~~~~~~~~~v~f~---~sG  167 (480)
                      +.|.+..+-.     ...|.|.+++...+.+.   ++....+.  .   ..+++ .++++++.++.+.+++.|+   +||
T Consensus        35 ~~l~l~~sen-----~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sg  109 (452)
T PTZ00094         35 EGLELIASEN-----FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSG  109 (452)
T ss_pred             cCeeEecccc-----cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCch
Confidence            4555554432     35699999998877542   12222221  1   22332 4567888888766666677   799


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++||..+++....  +++.|++. ..-||..........  ..+.......+....++....+  ..|    .+++++++
T Consensus       110 t~an~~v~~al~~--~gd~Ii~~-~~ehg~~l~~~~~l~--~~~~~~~~~~~~~~~~~~~~~g--~id----~~~L~~~l  178 (452)
T PTZ00094        110 SPANFAVYTALLQ--PHDRIMGL-DLPSGGHLTHGFYTA--KKKVSATSIYFESLPYQVNEKG--LID----YDKLEELA  178 (452)
T ss_pred             HHHHHHHHHHhcC--CCCEEEec-ccccCCccccccccc--ccccccceeeeeeeecccCCCC--CcC----HHHHHHHH
Confidence            9999998886632  45666664 445665543321100  0000000011222222211111  123    67888888


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cc
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KG  325 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~  325 (480)
                      +..   +.+.+++.  .+..|...+    +++|.++|+++|+++++|++|+ +|..+...+.....  ..|++++|  |+
T Consensus       179 ~~~---~~~lvi~~--~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~~--~~D~l~~S~hK~  246 (452)
T PTZ00094        179 KAF---RPKLIIAG--ASAYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPFP--YADVVTTTTHKS  246 (452)
T ss_pred             HHh---CCCEEEEe--CCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCCC--CCcEEEcCCccC
Confidence            642   23345542  344666776    9999999999999999999996 66544122111111  46888665  98


Q ss_pred             cccCccccccccCHHHHHhhcCC---CccccC--CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHh
Q 011669          326 IGNGIPLGAVVTTPEIAEVLTRR---NYFNTF--GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDK  397 (480)
Q Consensus       326 ~g~G~pig~v~~~~~~~~~l~~~---~~~~t~--~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~  397 (480)
                      ++|... |++++++++.+.+...   ..+..+  +.++...++..++|+.+..   +++.+++.++.+++++.|.+.  .
T Consensus       247 l~GP~G-g~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~--g  323 (452)
T PTZ00094        247 LRGPRS-GLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR--G  323 (452)
T ss_pred             CCCCCc-eEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC--C
Confidence            876442 6677766554322211   111122  3456677777788888744   346778888888888887663  2


Q ss_pred             cCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------cCCCEEEEeCCCCCC----HHHH
Q 011669          398 YGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------FYGNVFRITPPLCFT----KEDA  466 (480)
Q Consensus       398 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~~~t----~~~i  466 (480)
                      +.+...- .......+.+....       .....+...|.++||.+...+       ...+.+|++++..+|    ++|+
T Consensus       324 ~~v~~~~-~~~~~~~v~~~~~~-------~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di  395 (452)
T PTZ00094        324 YDLVTGG-TDNHLVLVDLRPFG-------ITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDF  395 (452)
T ss_pred             cEEecCC-CCCceEeecCCcCC-------CCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHH
Confidence            2222110 01112333332211       123567777777899995321       113689999977765    9999


Q ss_pred             HHHHHHHHHHHh
Q 011669          467 DYLVDVMDYSLS  478 (480)
Q Consensus       467 d~~l~~l~~~l~  478 (480)
                      +++++.|.+++.
T Consensus       396 ~~l~~~l~~~~~  407 (452)
T PTZ00094        396 KFVADFLDRAVK  407 (452)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.72  E-value=7.4e-16  Score=156.40  Aligned_cols=289  Identities=18%  Similarity=0.141  Sum_probs=179.3

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..+|.++...+|+++|+++.+.  +..++++||+.|+..++....  .+++.||+..+.|. .+...+.....       
T Consensus        55 y~r~~~pt~~~Le~~lA~l~G~--~~al~~~sG~~Ai~~~l~al~--~~Gd~Vv~~~~~y~-~~~~~~~~~~~-------  122 (386)
T PRK06767         55 YSRLGNPTVKLFEERMAVLEGG--EEALAFGSGMAAISATLIGFL--KAGDHIICSNGLYG-CTYGFLEVLEE-------  122 (386)
T ss_pred             ccCCCCcchHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCcHH-HHHHHHHHHHh-------
Confidence            4567788899999999999964  456788999999988886543  36678888777663 33332221110       


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                       ..++.....+.       .|    .+++++.++    +++++|++|.++|++|.+.+    +++|.++|+++|+++|+|
T Consensus       123 -~~gi~~~~~~~-------~d----~~~l~~~i~----~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD  182 (386)
T PRK06767        123 -KFMITHSFCDM-------ET----EADIENKIR----PNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVD  182 (386)
T ss_pred             -hcCeEEEEeCC-------CC----HHHHHHhhC----cCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEE
Confidence             01222211110       12    466777664    36789999998899998876    899999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-Cccc-cccccCHHHHHhhcCCCcccc-CCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTPEIAEVLTRRNYFNT-FGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pi-g~v~~~~~~~~~l~~~~~~~t-~~~~~~~~aaa~a~L~  369 (480)
                      |+|.. +..+ ..  . ..+  .|++  +++|.+++ |.++ |+++++++.++.+........ -..+|+.+++++..|+
T Consensus       183 ~a~a~-~~~~-~p--l-~~g--~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~  255 (386)
T PRK06767        183 NTFCS-PYLQ-RP--L-ELG--CDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLK  255 (386)
T ss_pred             CCCcc-cccC-Cc--h-hcC--CcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC
Confidence            99852 2222 11  1 123  3555  56799986 7775 889899887665432111111 1125666666555554


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE------------eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK  437 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  437 (480)
                      .+  +...++.+++..++.+.|++.    +.+..+            ++.|.++.|++...       ......+.+.|+
T Consensus       256 tl--~~r~~~~~~~a~~la~~L~~~----p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~-------~~~~~~f~~~l~  322 (386)
T PRK06767        256 TL--AVRMDRHCDNAEKIVSFLKNH----DAVEGVWYPEGELASRQMKRGGGVISFSIKGG-------KEETQAFINDLH  322 (386)
T ss_pred             cH--HHHHHHHHHHHHHHHHHHHcC----CCccEEECCCcHHHHHhCCCCCceEEEEEcCC-------HHHHHHHHHhCC
Confidence            33  223455566666666666543    433322            35677888887321       223567788877


Q ss_pred             HcCceeeccCc-------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          438 EMGVLVGKGGF-------------------------YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       438 ~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..++.+.-|+.                         ..+.+||+..+    |+.+.+++-|+++|.+
T Consensus       323 ~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~~  385 (386)
T PRK06767        323 FITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL----ESWEDIVSDLEQALKK  385 (386)
T ss_pred             ccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            66666544421                         12578998554    4566677777777653

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.72  E-value=1.3e-15  Score=153.39  Aligned_cols=280  Identities=18%  Similarity=0.129  Sum_probs=172.8

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..+|+++...+|+++|+++.  + +.+++++||++|+..++...  ..++++||+.+++|++.........         
T Consensus        45 y~ry~~p~~~~Le~~lA~l~--~-~~~v~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~y~~~~~~~~~~l---------  110 (366)
T PRK07582         45 YGRASNPTWRALEAALGELE--G-AEALVFPSGMAAITAVLRAL--LRPGDTVVVPADGYYQVRALAREYL---------  110 (366)
T ss_pred             eECCCCccHHHHHHHHHHHc--C-CCEEEECCHHHHHHHHHHHh--cCCCCEEEEeCCCcHhHHHHHHHHH---------
Confidence            45678899999999999998  3 34678899999999888654  2367899999999977654332110         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+....++.       .+.      .+...     +++++|++|..+|++|.+.+    +++|.++|+++|+++|+|
T Consensus       111 ~~~G~~v~~v~~-------~~~------~~~~~-----~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD  168 (366)
T PRK07582        111 APLGVTVREAPT-------AGM------AEAAL-----AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVD  168 (366)
T ss_pred             hcCeEEEEEECC-------CCh------HHHhc-----cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEE
Confidence            011444333322       110      11111     36788888888888887665    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc--CccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~--G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      |+|...  .|...  .   +...|++  +++|.++|  |+++||++++ +++++.+...........+|+.+..++..|+
T Consensus       169 ~t~~~~--~~~~p--~---~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~  241 (366)
T PRK07582        169 NTTATP--LGQRP--L---ELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLG  241 (366)
T ss_pred             CCCCCc--cccCc--h---hcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc
Confidence            998421  12111  1   2234665  57899975  6899999974 7777766543222333456777776666665


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE------------------eccceeEEEEEecCCCcCCCCHHHHHH
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAETLY  431 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~~~  431 (480)
                      .+  +-..++..++...+.+.|++.    +.+..|                  .|.|.++.|++. +          ...
T Consensus       242 tl--~~R~~~~~~na~~la~~L~~~----p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~-~----------~~~  304 (366)
T PRK07582        242 TL--GLRFARQCANALAVAELLAGH----PAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA-D----------AAA  304 (366)
T ss_pred             cH--HHHHHHHHHHHHHHHHHHHhC----CCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC-C----------HHH
Confidence            32  223355556666666666543    333222                  256778888873 1          122


Q ss_pred             HHHHHHHcCceeec---cC--------------cCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          432 IMDKMKEMGVLVGK---GG--------------FYGNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       432 ~~~~l~~~Gv~v~~---~~--------------~~~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      +.+.+...++....   |+              ...+.||++..+...++.|+.+.++|+
T Consensus       305 ~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~  364 (366)
T PRK07582        305 AERFVAASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALD  364 (366)
T ss_pred             HHHHHHhCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence            33444444554421   11              113579999887665555555544443

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.71  E-value=1.5e-15  Score=153.25  Aligned_cols=238  Identities=18%  Similarity=0.101  Sum_probs=149.5

Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ...+|.++...+|+++|+++.+.  +..++++||++|+..++.+   ..++++||+.++.|++.........        
T Consensus        45 ~y~r~~~pt~~~le~~la~l~g~--~~~~~~~sG~~ai~~~~~l---l~~Gd~Vl~~~~~y~~t~~~~~~~~--------  111 (366)
T PRK08247         45 DYSRTGNPTRGVLEQAIADLEGG--DQGFACSSGMAAIQLVMSL---FRSGDELIVSSDLYGGTYRLFEEHW--------  111 (366)
T ss_pred             cccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHH---hCCCCEEEEecCCcCcHHHHHHHHh--------
Confidence            34678899999999999999865  3457899999999977642   2366899999999976322111100        


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                       ...|+....++.       .|    .++++++++    +++++|++|.++|+.|.+..    +++|.++|++||+++|+
T Consensus       112 -~~~G~~v~~vd~-------~d----~~~l~~~i~----~~tklv~le~P~NP~~~~~d----l~~I~~la~~~g~~lIv  171 (366)
T PRK08247        112 -KKWNVRFVYVNT-------AS----LKAIEQAIT----PNTKAIFIETPTNPLMQETD----IAAIAKIAKKHGLLLIV  171 (366)
T ss_pred             -hccCceEEEECC-------CC----HHHHHHhcc----cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEE
Confidence             011333322221       12    467777774    26788888877777665444    99999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCcceeeecccccc--CccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHH
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~--G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~  370 (480)
                      ||+|... ..+ ..  . ..+...-+.+++|.++|  ++..|+++++ +++.+.+...........+|+.+..++..|+.
T Consensus       172 D~t~~~~-~~~-~p--~-~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t  246 (366)
T PRK08247        172 DNTFYTP-VLQ-RP--L-EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKT  246 (366)
T ss_pred             ECCCccc-ccc-Cc--h-hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCc
Confidence            9998411 111 11  1 12322333478899985  4788999987 66776665433334445677777776666653


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee--EeccceeEEEEE
Q 011669          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD--VRGRGFLLGVEF  415 (480)
Q Consensus       371 i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--v~g~g~~~~i~~  415 (480)
                      +.  ...++.+++.+.+.+.|    ++++.+..  .++.|.|+.+++
T Consensus       247 l~--~r~~~~~~~a~~l~~~L----~~~p~v~~v~~P~~gg~~sf~~  287 (366)
T PRK08247        247 LA--LRMRQHEENAKAIAAFL----NEQPGVTDVLYPGRGGMLSFRL  287 (366)
T ss_pred             HH--HHHHHHHHHHHHHHHHH----HhCCCeeEEecCCcCcEEEEEE
Confidence            32  22233344444444444    44555543  344677887776

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.71  E-value=2.4e-15  Score=147.60  Aligned_cols=203  Identities=19%  Similarity=0.257  Sum_probs=142.1

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-ccccc-cC---ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVL-YL---NHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~-~~---~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~  173 (480)
                      ..|||..+      .|-++|.|.+|+.+.+.... ..... |.   ....++-++.++++++.+.++|+||+++||+|.+
T Consensus        44 ~vyld~~a------t~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nl  117 (428)
T KOG1549|consen   44 PVYLDNQA------TGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNL  117 (428)
T ss_pred             cEEEecCc------CCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHH
Confidence            46888654      35678999999999877642 11112 32   2346788899999999888889999999999999


Q ss_pred             HHHH-HHhhcC-Cc-eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          174 AIMM-ARLYTG-CN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       174 Alk~-ar~~~~-~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +++- ++.+.. .+ .||.++..|-.-..+...+-...        ..+..+|+++        ++....+.+++.|+  
T Consensus       118 vl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g--------~~Vt~lpv~~--------~~~~d~~~~~~~i~--  179 (428)
T KOG1549|consen  118 VLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEG--------LEVTYLPVED--------SGLVDISKLREAIR--  179 (428)
T ss_pred             HHHHhhccccccccceEEEecccCcchhHHHHHHHhcC--------eEEEEeccCc--------cccccHHHHHHhcC--
Confidence            9985 454332 33 55555544433333332222111        1233344332        22222677777775  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--ccccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGN  328 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~  328 (480)
                        .++++|+++.++++.|+++|    +++|.++|+++|+.+++|.+|. .|..     ..+-.++.+|+.+++  |.+|.
T Consensus       180 --~~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa-vG~i-----~vDV~eln~D~~s~s~HK~ygp  247 (428)
T KOG1549|consen  180 --SKTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA-VGKI-----PVDVQELNADFLSISAHKIYGP  247 (428)
T ss_pred             --CCceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh-cCCc-----cccHHHcCchheeeecccccCC
Confidence              38999999999999999999    9999999999999999999996 4422     255667788999887  88874


Q ss_pred             -CccccccccCH
Q 011669          329 -GIPLGAVVTTP  339 (480)
Q Consensus       329 -G~pig~v~~~~  339 (480)
                       |  +|++++++
T Consensus       248 ~~--iGaLYvr~  257 (428)
T KOG1549|consen  248 PG--IGALYVRR  257 (428)
T ss_pred             Cc--ceEEEEcc
Confidence             4  89998886

>PRK06460 hypothetical protein; Provisional

Probab=99.70  E-value=1.9e-15  Score=152.68  Aligned_cols=295  Identities=15%  Similarity=0.121  Sum_probs=172.4

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      |...+..++...+|+++|++..+.. . .+.++||++|+..++.....  ++++||+..+.|.+........        
T Consensus        37 ~~y~r~~~p~~~~L~~~lA~l~g~~-~-~v~~~sG~~ai~~~l~al~~--~Gd~Vl~~~~~~~~ty~~~~~~--------  104 (376)
T PRK06460         37 YRYSREANPTVLELTKKIVELENAE-M-GVAFSSGMGAISTTALALLK--PGNSVLVHRDMFGRSYRFFTDY--------  104 (376)
T ss_pred             cceeCCCCccHHHHHHHHHHHhCCC-c-EEEeCCHHHHHHHHHHHHhC--CCCEEEEecCCcCcHHHHHHHH--------
Confidence            3445667888999999999998753 3 34558889999988875533  5678888766553211100000        


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                       ....|+....++.       ++    .+.++++++    +++++|+++.++|++|.+.+    +++|.++|++||+++|
T Consensus       105 -~~~~G~~v~~~~~-------~~----~~~l~~~~~----~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vi  164 (376)
T PRK06460        105 -LKNWGVNVDASNP-------GS----DNIIEKAKS----KRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILI  164 (376)
T ss_pred             -HHhhCcEEEEECC-------CC----HHHHHHhcC----CCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence             0011333222221       11    123444332    36789999999999998887    8899999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCccee--eecccccc--CccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~--G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L  368 (480)
                      +||+|..+ ... .  .. .++  .|++  +++|.++|  +.++|++++++++++.+.......+.+.+|..+..++..+
T Consensus       165 vDea~~~~-~~~-~--~l-~~~--~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~  237 (376)
T PRK06460        165 VDATFSTP-INQ-K--PL-ELG--ADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGI  237 (376)
T ss_pred             EECCcCcc-ccC-C--hh-hcC--CCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhch
Confidence            99998632 111 1  11 123  4555  68899974  3679999999999887764332233344555544444444


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHH----hcCcee----------eEeccceeEEEEEecCCCcCCCCHHHHHHHHH
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKD----KYGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMD  434 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~  434 (480)
                      +.++  ...+++.+..+++.+.|++...    .||...          ...|.|.|+.|++..+       ......+.+
T Consensus       238 ~~l~--~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~-------~~~~~~~~~  308 (376)
T PRK06460        238 KTLK--IRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGG-------QESALKVMK  308 (376)
T ss_pred             hhHH--HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCc-------HHHHHHHHH
Confidence            4332  3455566666666666654310    011110          1246788888988421       122344444


Q ss_pred             HHH--HcCceee--------cc---------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          435 KMK--EMGVLVG--------KG---------------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       435 ~l~--~~Gv~v~--------~~---------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .|.  ..+.-.+        |.               |...+.|||+..+    ||.+.+++-|+++|.+
T Consensus       309 ~l~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~  374 (376)
T PRK06460        309 SLKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI----EDVNDLIEDLDRALST  374 (376)
T ss_pred             hCCcceeccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence            442  1111111        10               1123679998554    4666777777777654

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.70  E-value=5.2e-15  Score=150.79  Aligned_cols=290  Identities=13%  Similarity=0.102  Sum_probs=180.4

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +.+.+|.++...+|+++|+++.+.  +.+++++||++|+..++....  .+++.||+..+.|.+.. ......       
T Consensus        56 ~~Y~r~~~p~~~~Le~~iA~~~g~--~~~l~~~sG~~Ai~~al~~ll--~~Gd~Vl~~~~~y~~~~-~~~~~~-------  123 (400)
T PRK06234         56 YIYSRLGNPTSTEVENKLALLEGG--EAAVVAASGMGAISSSLWSAL--KAGDHVVASDTLYGCTF-ALLNHG-------  123 (400)
T ss_pred             CcccCCCCccHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHh--CCCCEEEEecCccchHH-HHHHHH-------
Confidence            345567789999999999999964  467899999999998886543  36778888887664322 221100       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh--CCE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGL  290 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gil  290 (480)
                       ....|+....++.       .|    .+++++.++    +++++|++|.++|++|.+.+    +++|.++|+++  |++
T Consensus       124 -~~~~G~~v~~vd~-------~d----~e~l~~~i~----~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~  183 (400)
T PRK06234        124 -LTRYGVEVTFVDT-------SN----LEEVRNALK----ANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECL  183 (400)
T ss_pred             -HhhCCeEEEEECC-------CC----HHHHHHHhc----cCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCE
Confidence             0112343333321       12    567777775    36789999998899998876    99999999997  999


Q ss_pred             EEEcccccCccccCCCcccccccCCCccee--eecccccc-Cccc-cccccCHHHHHhhcCC--CccccCCCcHHHHHHH
Q 011669          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAG  364 (480)
Q Consensus       291 lI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pi-g~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aaa  364 (480)
                      +|+||+|... ..+ ..  .   +...|++  +++|.+++ |.++ ||+++++++++.+...  ....+...+|..++.+
T Consensus       184 livDea~~~~-~~~-~~--l---~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~  256 (400)
T PRK06234        184 VFVDNTFCTP-YIQ-RP--L---QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLI  256 (400)
T ss_pred             EEEECCCCch-hcC-Cc--h---hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            9999998632 222 11  1   2234555  67899985 7765 8999999988876532  1123345677877777


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEecCCCcCCCCH
Q 011669          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAK  426 (480)
Q Consensus       365 ~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~  426 (480)
                      +..|+.+  +...++..++..++.+.|++    ++.+..                  ..+.|.++.|++...       .
T Consensus       257 ~~~l~tl--~~r~~~~~~na~~~a~~L~~----~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~-------~  323 (400)
T PRK06234        257 IRGMKTL--QIRMEKHCKNAMKVAKFLES----HPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG-------V  323 (400)
T ss_pred             HhccCcH--HHHHHHHHHHHHHHHHHHHc----CCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc-------H
Confidence            7666533  23344455555555555543    332211                  235677888887421       1


Q ss_pred             HHHHHHHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          427 AETLYIMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       427 ~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ....++.+.|.-.++...-|+                         ...+.+||+..+.    +.+.+++-|+++|+
T Consensus       324 ~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE----~~~dl~~dl~~al~  396 (400)
T PRK06234        324 EEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLE----DVDDIIADLKQALD  396 (400)
T ss_pred             HHHHHHHHhCCcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCC----CHHHHHHHHHHHHH
Confidence            234556666654443332221                         1135799996655    44555555555544

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.70  E-value=5.5e-15  Score=150.20  Aligned_cols=239  Identities=16%  Similarity=0.126  Sum_probs=158.0

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +...++.++...+|+++|+++.+.  +.+++++||++|+..++.....  +++.||+..+.|++........        
T Consensus        56 ~~y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssG~~Ai~~~l~all~--~GD~Vi~~~~~y~~~~~~~~~~--------  123 (398)
T PRK08249         56 HIYSRNTNPTVQAFEEKVRILEGA--EAATAFSTGMAAISNTLYTFLK--PGDRVVSIKDTYGGTNKIFTEF--------  123 (398)
T ss_pred             ccccCCCChHHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcC--CCCEEEEcCCchHHHHHHHHHH--------
Confidence            444567789999999999999864  5678889999999999875433  6789999999997632211110        


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                       ....|+....++.       .|    .++++++++    +++++|++|.++|++|.+.+    +++|.++|++||+++|
T Consensus       124 -~~~~Gi~v~~vd~-------~d----~e~l~~~i~----~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~li  183 (398)
T PRK08249        124 -LPRMGVDVTLCET-------GD----HEQIEAEIA----KGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVV  183 (398)
T ss_pred             -HhhCCeEEEEcCC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEE
Confidence             0112333332221       12    467777774    26789999988888998876    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCccee--eecccccc-Cccc-cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pi-g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L  368 (480)
                      +|++|..+. .. ..     .....|++  +++|.+++ |-++ |++++++++++.+...........+|+.++.++..|
T Consensus       184 vD~t~a~~~-~~-~~-----l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l  256 (398)
T PRK08249        184 VDNTFATPI-NQ-NP-----LALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGM  256 (398)
T ss_pred             EECCcCccc-cC-Cc-----hhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence            999997432 11 11     11234555  67899986 5555 677788888877754333344556788777777777


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEe
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~  416 (480)
                      +.+.  ...++..++...+.+.|++    ++.+..                  ..|.|.++.|++.
T Consensus       257 ~tL~--~R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~  316 (398)
T PRK08249        257 KTLK--LRVRQQQESAMALAKYLQT----HPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLK  316 (398)
T ss_pred             chHH--HHHHHHHHHHHHHHHHHHc----CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEc
Confidence            6552  2334445555555555554    332221                  2466888888884

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.69  E-value=9.8e-15  Score=134.92  Aligned_cols=303  Identities=14%  Similarity=0.118  Sum_probs=183.1

Q ss_pred             cCChHHHHHHHHHHHhCCCCC--CEEEEeCCHHHHHHHHHHHHHhhc--CC-ce-EEEEcCCcccccccccccccCCCcc
Q 011669          138 YLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYT--GC-ND-IISLRNAYHGNAAGTMGATAQSNWK  211 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~--~~v~f~~sGseA~~~Alk~ar~~~--~~-~~-ii~~~~~yhG~~~~~~~~~~~~~~~  211 (480)
                      +....+..+++.|.+.++.++  +++.+||+...|...+..+.-.++  |. ++ ++-..+-|-|+....+---.--.++
T Consensus        75 G~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~k  154 (417)
T COG3977          75 GKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAK  154 (417)
T ss_pred             chhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeecc
Confidence            345667788888888887554  589999999888887776543221  22 23 3345788888776655322111111


Q ss_pred             ccccCCCeeEecC-CCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669          212 FNVVQTGVHHALN-PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (480)
Q Consensus       212 ~~~~~~g~~~~~~-p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  290 (480)
                      .     .++..+. ...|+.    |    .++|+      ..+.+.+|++.-..+++|.+. .++.+.+|.+++++||+.
T Consensus       155 P-----~iel~~~g~FKY~v----D----F~~l~------i~e~~g~ic~SRPtNPTGNVl-TdeE~~kldalA~~~giP  214 (417)
T COG3977         155 P-----NIELLPAGQFKYHV----D----FEHLH------IGESTGAICVSRPTNPTGNVL-TDEELAKLDALARQHGIP  214 (417)
T ss_pred             C-----Ccccccccceeecc----C----HHHcc------cccccceEEecCCCCCCCCcc-cHHHHHHHHHHhhhcCCc
Confidence            1     1111110 001111    1    22321      135889999998888888775 888899999999999999


Q ss_pred             EEEcccccCccccCCCcccccccCC----Cccee-e--eccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHH
Q 011669          291 CIADEVQAGFARTGSHFWGFEAHGV----VPDIV-T--MAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAA  363 (480)
Q Consensus       291 lI~DEv~tgfgr~G~~~~~~~~~~~----~pDiv-t--~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa  363 (480)
                      +|.|.+|. .=..|     +-..++    .++++ |  +||.=-.|.|+|.+++.+++++.+.......+.....++.|.
T Consensus       215 liIDnAYg-~PFP~-----iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~iisLap~~~G~Ai  288 (417)
T COG3977         215 LIIDNAYG-VPFPG-----IIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAI  288 (417)
T ss_pred             EEEecccC-CCCCc-----eecccccccCCCCEEEEeehhhcCCCCcceeEEEccHHHHHHHHhccceeeecCCCccHHH
Confidence            99999984 31222     222222    24444 4  456433789999999999999988764322333333444455


Q ss_pred             HHHHHHHhhhhHHHHHHHH--------HHHHHHHHHHHhHHhcCceeeEeccce-eEEEEEecCCCcCCCCHHHHHHHHH
Q 011669          364 GHAVLKVIQKDKLQNNAHV--------VGSYLKERLTALKDKYGIIGDVRGRGF-LLGVEFVTDRQLKTPAKAETLYIMD  434 (480)
Q Consensus       364 a~a~L~~i~~~~~~~~~~~--------~~~~l~~~L~~l~~~~~~~~~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~  434 (480)
                      +...++   +.++.+-..+        ..+.-.+.|++..-.++.. -.++.|. |+|+.|.+-+       .....+.+
T Consensus       289 a~~mie---~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~-iHkpEGAIFlWLWf~dLP-------Itt~~LYq  357 (417)
T COG3977         289 AAEMIE---SGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCL-IHKPEGAIFLWLWFKDLP-------ITTEELYQ  357 (417)
T ss_pred             HHHHhh---cchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcccee-eecCCcceeehhhhccCC-------CCHHHHHH
Confidence            544443   3222222222        2222222222222122222 2355555 5577664322       23678999


Q ss_pred             HHHHcCceeeccCcC-----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          435 KMKEMGVLVGKGGFY-----------GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       435 ~l~~~Gv~v~~~~~~-----------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .|+++||++.||..|           ++++|++  ++-+++.|+..+++|.+.+++
T Consensus       358 ~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn--~~~~~~~ie~Gva~lae~ve~  411 (417)
T COG3977         358 RLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMN--YVPEPEKIEKGVAILAEEVER  411 (417)
T ss_pred             HHHhCeEEEecccccCCCCCCCCCCccceEEEe--cCCCHHHHHHHHHHHHHHHHH
Confidence            999999999998432           4689999  889999999999999887764

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.69  E-value=2.3e-15  Score=136.42  Aligned_cols=296  Identities=18%  Similarity=0.214  Sum_probs=183.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g  218 (480)
                      +.+--.++...+++--|-..+.+.+..+..|.+++.|+.... +|+++|+..-++|--++.             .....+
T Consensus        67 ~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~-PGkeKIl~cPPtysMY~v-------------~A~iNd  132 (375)
T KOG0633|consen   67 PDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCD-PGKEKILDCPPTYSMYVV-------------DAAIND  132 (375)
T ss_pred             CCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhheec-CCccceeecCCcceeEEE-------------EeecCC
Confidence            333344556666666666678899999999999999987654 578999999999843222             222224


Q ss_pred             eeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc
Q 011669          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA  298 (480)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t  298 (480)
                      +..+.+|..  ..|+-+    .+.+...++.  ...++++++....+++|... +.+.+.+|.+.-+  ++++++||+|-
T Consensus       133 ~eVvkvpl~--pdF~ln----vdai~evl~~--ds~iK~~F~tSPgNPtg~~i-k~~di~KiLe~p~--nglVVvDEAYi  201 (375)
T KOG0633|consen  133 AEVVKVPLN--PDFSLN----VDAIAEVLEL--DSKIKCIFLTSPGNPTGSII-KEDDILKILEMPD--NGLVVVDEAYI  201 (375)
T ss_pred             ceEEEecCC--CCcccc----HHHHHHHHhc--cccceEEEEcCCCCCCcccc-cHHHHHHHHhCCC--CcEEEEeeeeE
Confidence            444444322  134434    4455555553  23678888777777777765 4444555544333  79999999999


Q ss_pred             CccccCCCcccccccCCCccee---eeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHh--h
Q 011669          299 GFARTGSHFWGFEAHGVVPDIV---TMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI--Q  372 (480)
Q Consensus       299 gfgr~G~~~~~~~~~~~~pDiv---t~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i--~  372 (480)
                      .|.-.++   ...+..-.|+++   |+||++| +|+|+|+...+.++++.+....  ..|+.+..+..+|+++|.--  +
T Consensus       202 dFsg~~S---~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~K--aPYNiS~~~s~~AL~Als~~n~k  276 (375)
T KOG0633|consen  202 DFSGVES---RMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAK--APYNISVAGSVAALAALSDSNGK  276 (375)
T ss_pred             eeccccc---cchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhcc--CCccccchhHHHHHHhcCcccch
Confidence            8843332   123334467766   6899999 8999999999999988876554  45555666777777777521  1


Q ss_pred             h-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec--cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC
Q 011669          373 K-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG--RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY  449 (480)
Q Consensus       373 ~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~  449 (480)
                      . +...+-+.+.+.++-..|.    ..+...+..|  ...|+.+++....     .........+.+-.+||.++--+..
T Consensus       277 kme~~rdaiv~er~RL~keLt----~v~~~~~~~gg~daNFiLi~v~~~~-----n~~akkly~q~at~~gVvVRfrgse  347 (375)
T KOG0633|consen  277 KMEDVRDAIVRERERLFKELT----EVPFLNDYPGGSDANFILIEVTGGD-----NGMAKKLYKQDATKMGVVVRFRGSE  347 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh----cCccccCCCCcccccEEEEEEcCCC-----cHHHHHHHHHHHHhcceEEEEcCCc
Confidence            1 2222222222233333333    2344443222  2456666664321     1112233455566889999764432


Q ss_pred             ---CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          450 ---GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       450 ---~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                         .+++||+   ..|+|+.+.+++.|+++
T Consensus       348 ~~c~G~lRit---vGt~EentvL~k~~K~~  374 (375)
T KOG0633|consen  348 EGCKGYLRIT---VGTPEENTVLMKCLKQF  374 (375)
T ss_pred             cccceeEEEE---cCCcccchHHHHHHHhh
Confidence               3689999   66899999999988875

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.69  E-value=4.9e-15  Score=149.85  Aligned_cols=237  Identities=16%  Similarity=0.108  Sum_probs=155.6

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      .++|.++...+|+++|+++.+.  +.+++++||++|+..++....  .+++.|++..++|.+...........       
T Consensus        45 Y~R~~~p~~~~le~~lA~l~g~--~~v~~~~gg~~Ai~~~l~all--~~GD~Vl~~~p~y~~~~~~~~~~~~~-------  113 (382)
T TIGR02080        45 YSRSGNPTRDLLQQALAELEGG--AGAVVTNTGMSAIHLVTTALL--GPDDLLVAPHDCYGGTYRLLNALAKK-------  113 (382)
T ss_pred             ccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHc--CCCCEEEEcCCCcHHHHHHHHHHHhh-------
Confidence            4577889999999999999863  578999999999999998653  36788999999996533221111110       


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                        .++.....+.       .|    .++++++++    +++++|+++.++|++|.+.+    +++|.++|+++|+++|+|
T Consensus       114 --~~~~v~~~d~-------~d----~~~l~~ai~----~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD  172 (382)
T TIGR02080       114 --GCFRVLFVDQ-------GD----EQALRAALA----QKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVD  172 (382)
T ss_pred             --cCeEEEEECC-------CC----HHHHHHhcC----cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEE
Confidence              1222211110       12    466777774    25788999988889998876    899999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc--Ccccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~--G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      |+|..+-..  ..  .   ....|++  +++|.++|  +++.|++++ ++++.+.+...........+|+.+..++..|+
T Consensus       173 ~a~~~~~~~--~p--l---~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~  245 (382)
T TIGR02080       173 NTFLSPALQ--NP--L---ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLR  245 (382)
T ss_pred             CCCcccccC--Cc--h---hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccc
Confidence            999633111  11  1   1224555  67899974  578998876 57777766543334455677888777766665


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEe
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~  416 (480)
                      .+..  ..++..++...+.+.|+    .+|.+..                  ..|.|.|+.|++.
T Consensus       246 tl~~--R~~~~~~na~~~a~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~  304 (382)
T TIGR02080       246 TLVA--RMRLQQRNAQAIVEYLQ----TQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELK  304 (382)
T ss_pred             hHHH--HHHHHHHHHHHHHHHHH----hCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEec
Confidence            4322  13334444444444444    3443321                  2466888888884

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.69  E-value=3.5e-15  Score=151.51  Aligned_cols=288  Identities=17%  Similarity=0.158  Sum_probs=170.2

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ...+.++...+++++|+++++.  +.+++++||++|+..++....  .+++.||+..+.|.+........         .
T Consensus        55 y~r~~~p~~~~le~~la~l~g~--~~~v~~ssG~~Ai~~al~al~--~~Gd~Vi~~~~~y~~t~~~~~~~---------~  121 (390)
T PRK08133         55 YSRFTNPTVTMFQERLAALEGA--EACVATASGMAAILAVVMALL--QAGDHVVSSRSLFGSTVSLFEKI---------F  121 (390)
T ss_pred             eECCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEccCcchhHHHHHHHH---------H
Confidence            3456788899999999999864  468899999999999987653  36778888777664432211100         0


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+....++.       .|    .+++++.++    +++++|++|.++++.|.+.+    +++|.++|++||+++|+|
T Consensus       122 ~~~G~~v~~vd~-------~d----~~~l~~~i~----~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD  182 (390)
T PRK08133        122 ARFGIETTFVDL-------TD----LDAWRAAVR----PNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVD  182 (390)
T ss_pred             HHcCcEEEEECC-------CC----HHHHHHhcC----cCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEE
Confidence            112333332221       12    466777774    36889999988888998876    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-Cccc-cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pi-g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~  370 (480)
                      +++... ... ..  . ..+  .|++  +++|.+++ |.++ |++++++++++.+...........++..+..++..++.
T Consensus       183 ~t~~~~-~~~-~p--l-~~g--~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~t  255 (390)
T PRK08133        183 NCFCTP-ALQ-QP--L-KLG--ADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLET  255 (390)
T ss_pred             CCCccc-ccC-Cc--h-hhC--CcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccch
Confidence            998522 111 11  1 123  4555  57799985 7887 56777877766554322222233456655554444432


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee------------------eEeccceeEEEEEecCCCcCCCCHHHHHHH
Q 011669          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIG------------------DVRGRGFLLGVEFVTDRQLKTPAKAETLYI  432 (480)
Q Consensus       371 i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~  432 (480)
                      +.  ...++..++...+.+.|++    ++.+.                  ...|.|.|+.|++..+       ......+
T Consensus       256 l~--~R~~~~~~~a~~la~~L~~----~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~-------~~~~~~f  322 (390)
T PRK08133        256 LS--LRMEAHSANALALAEWLEA----HPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGG-------REAAWRV  322 (390)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHh----CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCC-------HHHHHHH
Confidence            21  1223333344444444443    33221                  1346688888888421       1223445


Q ss_pred             HHHHH--HcCceee--------cc---------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          433 MDKMK--EMGVLVG--------KG---------------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       433 ~~~l~--~~Gv~v~--------~~---------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+.|+  ..++-++        |.               |...+.|||+..+    |+.+.+++-|+++|+
T Consensus       323 ~~~l~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  389 (390)
T PRK08133        323 IDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGL----EDVADIKADLARGLA  389 (390)
T ss_pred             HHhCCcceEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHhh
Confidence            44443  1121111        10               1123579998554    466777777777764

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.69  E-value=5e-15  Score=150.41  Aligned_cols=294  Identities=19%  Similarity=0.137  Sum_probs=172.7

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +...++.++...+|+++++++.+  .+.+++++||++|+..++....  .+++.||+.++.|.+.....-...       
T Consensus        57 ~~Y~r~~~pt~~~Le~~lA~l~g--~~~~l~~~sgt~Ai~~~l~al~--~~GD~Vl~~~~~y~~~~~~~~~~~-------  125 (394)
T PRK07050         57 WRYGLHATPTSLALAQRLAEIEG--GRHALLQPSGLAAISLVYFGLV--KAGDDVLIPDNAYGPNRDHGEWLA-------  125 (394)
T ss_pred             cccCCCCCHHHHHHHHHHHHHhC--CCeEEEeccHHHHHHHHHHHHh--CCCCEEEEecCCcccHHHHHHHHH-------
Confidence            34467788999999999999985  4689999999999999998663  367899999999965432110000       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                        ...|+....++.       .+    .+++++.++    +++++|++|.+.|+.|.+..    +++|.++|+++|+++|
T Consensus       126 --~~~Gi~v~~vd~-------~~----~~~l~~~i~----~~tklV~le~p~Np~~~~~d----i~~I~~ia~~~gi~li  184 (394)
T PRK07050        126 --RDFGITVRFYDP-------LI----GAGIADLIQ----PNTRLIWLEAPGSVTMEVPD----VPAITAAARARGVVTA  184 (394)
T ss_pred             --HhcCeEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCccHhh----HHHHHHHHHHcCCEEE
Confidence              012343333221       11    246777664    36788999987777765544    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCccee--eeccccccC--cccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G--~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~  367 (480)
                      +|++|.. +..   .... ..|  .|++  +++|.+++|  .+.|++++ ++++++.+.........+.+|..+..++..
T Consensus       185 vD~a~a~-~~~---~~~l-~~G--aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~  257 (394)
T PRK07050        185 IDNTYSA-GLA---FKPF-EHG--VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRG  257 (394)
T ss_pred             EECCccc-ccc---cCHH-HcC--CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence            9999862 111   1111 123  4655  678999854  57887776 577777665432222334556555444333


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEecCCCcCCCCHHHH
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKAET  429 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~~  429 (480)
                      |+.+.  ...++..+....+.+.|++    ++.+..                  ..+.|.++.+++..+.     .....
T Consensus       258 l~tl~--~Rl~~~~~~a~~la~~L~~----~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~-----~~~~~  326 (394)
T PRK07050        258 LPSLQ--VRLAAHDRSALEVAEWLKA----RPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERY-----SPAQV  326 (394)
T ss_pred             CCcHH--HHHHHHHHHHHHHHHHHHh----CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCC-----CHHHH
Confidence            32221  1223333333344444433    332221                  2245666667764211     12345


Q ss_pred             HHHHHHHHHcCceeeccCc-------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          430 LYIMDKMKEMGVLVGKGGF-------------------YGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       430 ~~~~~~l~~~Gv~v~~~~~-------------------~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      .++.+.|...++.+.-|+.                   .++.|||+..+...++-++.+..+|+++
T Consensus       327 ~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGlE~~~dl~~dl~~al~~~  392 (394)
T PRK07050        327 DAFVEALELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGLEDEADLIADLEQALEAA  392 (394)
T ss_pred             HHHHHcCCCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            6677777665544332221                   1257899976654444444444444443

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.69  E-value=8.8e-15  Score=148.13  Aligned_cols=238  Identities=15%  Similarity=0.095  Sum_probs=154.9

Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ..+++.++...+|+++|+++.+.  +.+++++||++|+..++....  .+++.|++.++.|++...........      
T Consensus        45 ~Y~R~~~pt~~~L~~~lA~l~g~--~~~i~~~sg~~Ai~~~l~~l~--~~GD~Vl~~~~~y~~~~~~~~~~~~~------  114 (386)
T PRK08045         45 DYSRRGNPTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTVFL--KPGDLLVAPHDCYGGSYRLFDSLAKR------  114 (386)
T ss_pred             eeeCCCCccHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc--CCCCEEEEcCCCcHHHHHHHHHHHhh------
Confidence            34678889999999999999864  468999999999999987543  36788999999997633222111110      


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                         .++....++.       .|    .+++++.++    +++++|+++.++|++|.+.+    +++|.++|+++|+++|+
T Consensus       115 ---~gi~v~~vd~-------~d----~e~l~~~l~----~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~viv  172 (386)
T PRK08045        115 ---GCYRVLFVDQ-------GD----EQALRAALA----EKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVV  172 (386)
T ss_pred             ---CCeEEEEeCC-------CC----HHHHHHhcc----cCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEE
Confidence               1222111110       12    466777664    36788999999999998876    89999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCccee--eecccccc--Ccccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHH
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~--G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L  368 (480)
                      ||+|..... . ..     .....|++  +++|.++|  +...|++++ ++++.+.+.......+...+|+.+..++..|
T Consensus       173 Deay~~~~~-~-~p-----l~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl  245 (386)
T PRK08045        173 DNTFLSPAL-Q-NP-----LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGL  245 (386)
T ss_pred             ECCCCcccc-C-Cc-----hhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence            999964311 1 11     12234655  67899984  467888876 5777766653333344557788887777766


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEe
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~  416 (480)
                      +.+.  -..++..+....+.+.|+    .+|.+..                  ..|.|.|+.|++.
T Consensus       246 ~tl~--~R~~~~~~na~~la~~L~----~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~  305 (386)
T PRK08045        246 RTLV--PRMELAQRNAQAIVKYLQ----TQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD  305 (386)
T ss_pred             ccHH--HHHHHHHHHHHHHHHHHH----cCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEec
Confidence            5432  123333344444444443    3443322                  2467888888884

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.69  E-value=1.5e-14  Score=146.06  Aligned_cols=310  Identities=14%  Similarity=0.125  Sum_probs=187.2

Q ss_pred             HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccc
Q 011669          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (480)
Q Consensus       118 p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~  197 (480)
                      ++..+++.+.+...+.+   ...+...++++.+++.++  .+.+++++||++|+..+++.+ ...++++||+..++|.+.
T Consensus        11 ~~e~~a~~~~~~~~~~~---~~g~~~~~~e~~la~~~g--~~~~v~~~sgt~aL~~~l~al-~~~pGd~Viv~~~t~~~~   84 (376)
T TIGR02379        11 GQELEYIAEAISEGKLS---GDGPFSRRCETWLENRTG--TKKALLTPSCTAALEMAALLL-DIQPGDEVIMPSYTFVST   84 (376)
T ss_pred             HHHHHHHHHHHHcCCcc---CCcHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHH
Confidence            56677888777654321   135678899999999874  478999999999999988754 234678999999998765


Q ss_pred             cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChH
Q 011669          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  277 (480)
                      .......             |...+.++... ..|..|    .+++++.++    .++++|+  |++ .+|...+    +
T Consensus        85 ~~~~~~~-------------G~~~v~vd~d~-~~~~~d----~~~le~~i~----~~tk~Ii--p~~-~~G~~~d----~  135 (376)
T TIGR02379        85 ANAFVLR-------------GAKIVFVDIRP-DTMNID----ETLIESAIT----HRTKAIV--PVH-YAGVACD----M  135 (376)
T ss_pred             HHHHHHc-------------CCEEEEEecCC-CcCCCC----HHHHHHhcC----cCceEEE--EeC-CCCCccC----H
Confidence            4433322             22222222111 112223    567777764    2567776  333 3455554    8


Q ss_pred             HHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec----cccccCccccccccC-HHHHHhhcCCC-c-
Q 011669          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRRN-Y-  350 (480)
Q Consensus       278 ~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~~-~-  350 (480)
                      ++|.++|++||+++|.|++|+ +|..    +.-...+..-|+.+||    |.++.|.+.|+++.+ +++++.+.... + 
T Consensus       136 ~~I~~la~~~~i~vIeDaa~~-~g~~----~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g  210 (376)
T TIGR02379       136 DTIMALANKHQLFVIEDAAQG-VMST----YKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKG  210 (376)
T ss_pred             HHHHHHHHHCCCEEEEECccc-cCCc----cCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhC
Confidence            999999999999999999997 4321    1111224445788888    999988788988776 67777665321 1 


Q ss_pred             -------------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH----hcCce-eeEec
Q 011669          351 -------------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD----KYGII-GDVRG  406 (480)
Q Consensus       351 -------------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~-~~v~g  406 (480)
                                         +..+-.+.+..+.+++.|+.++  ++.++-++..++..+.|..+..    ..+.+ .....
T Consensus       211 ~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~--~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~  288 (376)
T TIGR02379       211 TNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQAD--RINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQH  288 (376)
T ss_pred             CCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCee
Confidence                               1122234566666667676543  3455555566666666655421    11110 01110


Q ss_pred             cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC----------cC--------------CCEEEEeCCCCCC
Q 011669          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG----------FY--------------GNVFRITPPLCFT  462 (480)
Q Consensus       407 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~--------------~~~iRi~p~~~~t  462 (480)
                      .-.++++.+.. .       ...+++.+.|.++||.+...-          .+              .+.+.+=.....|
T Consensus       289 ~~~~~~i~~~~-~-------~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~  360 (376)
T TIGR02379       289 NAHMFYIKLKD-E-------DDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLS  360 (376)
T ss_pred             eeEEEEEEECC-c-------CCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCC
Confidence            00122333321 0       124678899999999876311          00              1123332223479


Q ss_pred             HHHHHHHHHHHHHHH
Q 011669          463 KEDADYLVDVMDYSL  477 (480)
Q Consensus       463 ~~~id~~l~~l~~~l  477 (480)
                      ++|++..++.|++++
T Consensus       361 ~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       361 KEDQARVIQTICDYL  375 (376)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999875

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK05968 hypothetical protein; Provisional

Probab=99.68  E-value=5.2e-15  Score=150.22  Aligned_cols=288  Identities=17%  Similarity=0.093  Sum_probs=174.4

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..++.++...+|.++++++.+.  +..++++||+.|+..++....  .++++||+..+.|++........         .
T Consensus        57 Y~r~~~p~~~~le~~lA~l~g~--~~av~~~sG~~Ai~~al~al~--~~Gd~Vl~~~~~y~~t~~~~~~~---------~  123 (389)
T PRK05968         57 YSRGDNPTVRAFEEMLAKLEGA--EDARGFASGMAAISSTVLSFV--EPGDRIVAVRHVYPDAFRLFETI---------L  123 (389)
T ss_pred             ccCCCChhHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEeCCCchHHHHHHHHH---------H
Confidence            4566788899999999999865  345677999999999887543  36788999998887632111100         0


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+....++.       .|    .+++++.+.     ++++|++|.+.|..+.+.    .+++|.++|++||+++|+|
T Consensus       124 ~~~G~~v~~vd~-------~d----~~~l~~~i~-----~tklV~ie~pt~~~~~~~----dl~~i~~la~~~gi~vivD  183 (389)
T PRK05968        124 KRMGVEVDYVDG-------RD----EEAVAKALP-----GAKLLYLESPTSWVFELQ----DVAALAALAKRHGVVTMID  183 (389)
T ss_pred             HHcCceEEEeCC-------CC----HHHHHHhcc-----cCCEEEEECCCCCCCcHH----HHHHHHHHHHHcCCEEEEE
Confidence            011333222211       12    456766652     467888887666555444    4999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCHHHHHhhcCCCc-cccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTPEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~-~~t~~~~~~~~aaa~a~L~  369 (480)
                      ++|.... .. ..  .. +|.  |++  +++|.+++ | ...|+++.++++++.+..... ......+++.++.++..|+
T Consensus       184 ~a~a~~~-~~-~p--~~-~g~--Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~  256 (389)
T PRK05968        184 NSWASPV-FQ-RP--IT-LGV--DLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLR  256 (389)
T ss_pred             CCCcchh-cc-Cc--hh-cCC--cEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccC
Confidence            9986331 11 11  11 233  555  57799985 3 677888889988776653211 1113356777777766666


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe-------------ccceeEEEEEecCCCcCCCCHHHHHHHHHHH
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-------------GRGFLLGVEFVTDRQLKTPAKAETLYIMDKM  436 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-------------g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l  436 (480)
                      .+  +...++-.+...++.+.|++    ++.+..+.             +.|.++.|++..        .....++.+.|
T Consensus       257 tl--~~r~~~~~~~a~~la~~L~~----~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~--------~~~~~~f~~~L  322 (389)
T PRK05968        257 TL--PLRMKAHEASALEIARRLKA----HPVVERVCHPALANHPPAGLSGTSGLFSFIFRE--------GIDVRAFADAL  322 (389)
T ss_pred             cH--HHHHHHHHHHHHHHHHHHHh----CCCccEEECCCCCCChHHhCCCCceEEEEEECC--------HHHHHHHHHhC
Confidence            44  22333344445555555544    44443332             456677777731        12356677777


Q ss_pred             HHcCceeeccCc-------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          437 KEMGVLVGKGGF-------------------------YGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       437 ~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ...++.+.-|+.                         ..+.+|+++.+..+++-++.+-.+|+++
T Consensus       323 ~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~~  387 (389)
T PRK05968        323 KLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAAA  387 (389)
T ss_pred             CccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence            665544332211                         1357999988766555555555555443

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.68  E-value=5.4e-15  Score=150.51  Aligned_cols=237  Identities=18%  Similarity=0.147  Sum_probs=151.9

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..+|.++...+|.++|+++.+.  +.+++++||+.|+..++....  .++++||+....| |.+.......        .
T Consensus        64 Y~r~~~p~~~~le~~lA~l~g~--~~al~~~sG~~Ai~~~l~all--~~Gd~Vl~~~~~~-~~t~~~~~~~--------~  130 (403)
T PRK07810         64 YSRYGNPTVSMFEERLRLIEGA--EACFATASGMSAVFTALGALL--GAGDRLVAARSLF-GSCFVVCNEI--------L  130 (403)
T ss_pred             eeCCCCchHHHHHHHHHHHhCC--CcEEEECChHHHHHHHHHHHh--CCCCEEEEccCCc-chHHHHHHHH--------H
Confidence            4567889999999999999864  468899999999999887653  3677888776554 3332211100        0


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+....++.       .|    .++++++++    .++++|++|.+.|++|.+..    +++|.++|+++|+++|+|
T Consensus       131 ~~~G~~v~~vd~-------~d----~~~l~~ai~----~~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD  191 (403)
T PRK07810        131 PRWGVETVFVDG-------ED----LSQWEEALS----VPTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLD  191 (403)
T ss_pred             HHcCcEEEEECC-------CC----HHHHHHhcC----cCceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEE
Confidence            012333332221       12    567777775    36789999999999998876    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-Cccc-cccccCHHHHH-hhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pi-g~v~~~~~~~~-~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      |+|.. +... .  .. ..|  .|++  +++|.+++ |.++ |+++++++.+. .+...........+|+.++.++..|+
T Consensus       192 ~a~a~-~~~~-~--~~-~~g--aDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~  264 (403)
T PRK07810        192 NVFAT-PLLQ-R--GL-PLG--ADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLE  264 (403)
T ss_pred             CCCCc-cccC-C--hh-hcC--CcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccC
Confidence            99862 1111 1  11 123  4666  56799986 7777 77878877554 33321112223467888888777776


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE------------------eccceeEEEEEe
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFV  416 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~  416 (480)
                      .+.  ...++..+...++.+.|++    +|.+..|                  .|.|.++.+++.
T Consensus       265 tl~--~R~~~~~~~a~~~a~~L~~----~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~  323 (403)
T PRK07810        265 TLA--LRVRHSNASALRIAEFLEG----HPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELD  323 (403)
T ss_pred             cHH--HHHHHHHHHHHHHHHHHhc----CCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence            542  2344444444455444443    3433332                  267888888884

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.68  E-value=9.8e-15  Score=148.23  Aligned_cols=296  Identities=17%  Similarity=0.116  Sum_probs=179.9

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +..++|.++...+|+++|+++.+.  +.+++++||+.|+..++....  .+++.||+..+.|.+.........       
T Consensus        51 ~~y~r~~~p~~~~le~~lA~l~g~--~~av~~~sG~~Ai~~~l~al~--~~Gd~Vi~~~~~y~~t~~~~~~~~-------  119 (391)
T TIGR01328        51 YIYSRLGNPTVSNLEGRIAFLEGT--EAAVATSSGMGAIAATLLTIL--KAGDHLISDECLYGCTFALLEHAL-------  119 (391)
T ss_pred             CceeCCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEecCcchHHHHHHHHHH-------
Confidence            445667889999999999999964  457899999999998887553  367788888777643222111110       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                        ...|+....++.       +|    .+++++.++    +++++|++|.++++.|.+.+    +++|.++|+++|+++|
T Consensus       120 --~~~G~~~~~vd~-------~d----~e~l~~~i~----~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~li  178 (391)
T TIGR01328       120 --TKFGIQVDFINM-------AI----PEEVKAHIK----DNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVI  178 (391)
T ss_pred             --hcCCeEEEEECC-------CC----HHHHHHhhc----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence              112433332221       12    466777664    36789999988888888776    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCccee--eecccccc-Ccc-ccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIP-LGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHA  366 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~p-ig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a  366 (480)
                      +||+|.. +..+ ..     .+...|++  +++|.+++ |.+ .|++++++++++.+....  .......+|..++.++.
T Consensus       179 vD~a~a~-~~~~-~~-----~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~  251 (391)
T TIGR01328       179 VDNTFAT-PMLT-NP-----VALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILR  251 (391)
T ss_pred             EECCCch-hccC-Cc-----hhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHh
Confidence            9999862 2222 11     12235555  67799985 665 577888888887665321  11123346666666666


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhHH----hcCce----------eeEeccceeEEEEEecCCCcCCCCHHHHHHH
Q 011669          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKD----KYGII----------GDVRGRGFLLGVEFVTDRQLKTPAKAETLYI  432 (480)
Q Consensus       367 ~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~----------~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~  432 (480)
                      .|+.+  +...++..++..++.+.|++...    .||..          ...++.|.++.|++..+       .....++
T Consensus       252 ~L~tl--~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~-------~~~~~~f  322 (391)
T TIGR01328       252 GLKTL--NIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGG-------FAGAKKL  322 (391)
T ss_pred             CcCcH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCC-------HHHHHHH
Confidence            56533  22345555666666666654310    01111          11346677888887421       1223444


Q ss_pred             HHHHHH--cCceee--------cc---------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          433 MDKMKE--MGVLVG--------KG---------------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       433 ~~~l~~--~Gv~v~--------~~---------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      .+.|.=  .+.-.+        |.               |...+.|||+..+    ||.+.+++-|+++|+++
T Consensus       323 ~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~  391 (391)
T TIGR01328       323 LNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL----EDADDLIADLKQALDAL  391 (391)
T ss_pred             HHhCCcceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHhhC
Confidence            444431  111111        00               0113578998554    56777888888887654

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.67  E-value=1.1e-14  Score=147.52  Aligned_cols=314  Identities=15%  Similarity=0.054  Sum_probs=185.5

Q ss_pred             CHH-HHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC-CCEEEEeC-CHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669          117 HPY-VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTN-SGTEANELAIMMARLYTGCNDIISLRNA  193 (480)
Q Consensus       117 ~p~-v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~-sGseA~~~Alk~ar~~~~~~~ii~~~~~  193 (480)
                      +|+ |.+|+.+.+....|.... ......+.++.|+++++.. ..+|+|+. |||++++.++....  .+++.+++. .+
T Consensus        24 ~~~~v~~a~~~~~~~~~hr~~~-f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~--~~~~~~vi~-~g   99 (378)
T PRK03080         24 RPGWQLEALADALLGRSHRQKP-VKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL--GARRVDHLA-WE   99 (378)
T ss_pred             ChHHHHHHHHhhhcccCcCCHH-HHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcC--CCCcceEEE-eC
Confidence            577 999988654322243322 2466788899999998753 34677775 99999999997652  222333333 45


Q ss_pred             cccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       194 yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      .||.........   .+..    ..+..++.+  +...  .|    +++    ++     .++.|.+..+.+.+|.+.| 
T Consensus       100 ~f~~~~~~~~~~---~~g~----~~v~~~~~~--~g~~--~d----~~~----i~-----~~~~V~~~h~~t~tG~~~p-  154 (378)
T PRK03080        100 SFGSKWATDVVK---QLKL----EDPRVLEAD--YGSL--PD----LSA----VD-----FDRDVVFTWNGTTTGVRVP-  154 (378)
T ss_pred             HHHHHHHHHHHh---hcCC----CCceEeccC--CCCC--CC----Hhh----cC-----CCCCEEEEecCCccceecc-
Confidence            666543221100   0000    011222211  1111  11    222    22     1334677777788898887 


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCCC--
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN--  349 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~~--  349 (480)
                         +++|.+  ++||+++|+|-+|+ +|..   .  ++..+  .|++++|  |++++...+|+++++++..+.+.+..  
T Consensus       155 ---i~~I~~--~~~g~~~vVDa~qs-~G~~---p--idv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~  221 (378)
T PRK03080        155 ---VARWIG--ADREGLTICDATSA-AFAL---P--LDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPA  221 (378)
T ss_pred             ---chhhcc--ccCCCeEEEecccc-cccC---C--CCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCC
Confidence               888888  78999999999997 5422   2  22223  4888776  99987667899999999887665321  


Q ss_pred             --------------------ccccCCCcH-HHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCcee-e
Q 011669          350 --------------------YFNTFGGNP-VCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIG-D  403 (480)
Q Consensus       350 --------------------~~~t~~~~~-~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~  403 (480)
                                          ...|++.++ .+..+..++|+.+.+.    +..++.+++.+++++.|+++.. ..... .
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~-~~~~~~~  300 (378)
T PRK03080        222 RPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPW-ATPLVAD  300 (378)
T ss_pred             CCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCC-cccccCC
Confidence                                012333333 3444456778877654    3445666666777777665521 11111 1


Q ss_pred             Eecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          404 VRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       404 v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ...+ +.++.+.+..      ++......+...+.++|+++..++.  ..+.+|+++...+|++||+.++++|++++++
T Consensus       301 ~~~~s~~i~~~~~~~------~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~  373 (378)
T PRK03080        301 PATRSNTSVTLDFVD------AQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFER  373 (378)
T ss_pred             ccccCccEEEEEcCC------chHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            1111 2344444311      0001123355667777888876542  2468999999999999999999999998764

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.67  E-value=9e-15  Score=148.84  Aligned_cols=243  Identities=17%  Similarity=0.111  Sum_probs=153.1

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +....|.++...+|+++|+++.+.  +..+.++||+.|+..++....  .++++||+.++.|.+.........       
T Consensus        57 ~~y~r~~~p~~~~Le~~lA~l~G~--~~~~~~~sG~~Ai~~~l~~~l--~~Gd~Vl~~~~~y~~~~~~~~~~~-------  125 (398)
T PRK07504         57 FIYSRYSNPTVDMFEKRMCALEGA--EDARATASGMAAVTAAILCQV--KAGDHVVAARALFGSCRYVVETLL-------  125 (398)
T ss_pred             ceeecCCCchHHHHHHHHHHHhCC--CeeeEecCHHHHHHHHHHHHh--CCCCEEEEcCCchhHHHHHHHHHH-------
Confidence            334567788999999999999854  445678899999988776433  367889998888865432211110       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                        ...|+....++.       .|    .++++++++    +++++|++|.+++++|.+.+    +++|.++|+++|+++|
T Consensus       126 --~~~G~~v~~vd~-------~d----~e~l~~ai~----~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lv  184 (398)
T PRK07504        126 --PRYGIESTLVDG-------LD----LDNWEKAVR----PNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLV  184 (398)
T ss_pred             --hhcCeEEEEECC-------CC----HHHHHHhcC----cCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEE
Confidence              112333332221       12    567777764    36889999999999998876    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCccee--eecccccc-Ccccc-ccccCHHHHH-hhcCCCccccCCCcHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLG-AVVTTPEIAE-VLTRRNYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pig-~v~~~~~~~~-~l~~~~~~~t~~~~~~~~aaa~a~  367 (480)
                      +||+|..+ ... ..  . .+|  .|++  +++|.+++ |.++| +++++++.++ .+...........+|+.++.++..
T Consensus       185 vD~a~a~~-~~~-~~--~-~~g--aDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~  257 (398)
T PRK07504        185 VDNVFATP-LFQ-KP--L-ELG--AHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKG  257 (398)
T ss_pred             EECCcccc-ccC-Cc--h-hhC--CCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence            99999732 111 11  1 123  4655  56799985 88986 5667766554 233211112234567888888777


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHH----hcCce----------eeEeccceeEEEEEe
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKD----KYGII----------GDVRGRGFLLGVEFV  416 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~----------~~v~g~g~~~~i~~~  416 (480)
                      |+.+.  ...++..++..++.+.|++...    .||..          ...+|.|.|+.|++.
T Consensus       258 L~tl~--~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~  318 (398)
T PRK07504        258 LETLP--VRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELK  318 (398)
T ss_pred             cchHH--HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeC
Confidence            77553  2344444555556555554210    01111          113466889999984

>PRK02769 histidine decarboxylase; Provisional

Probab=99.67  E-value=8.7e-14  Score=140.19  Aligned_cols=287  Identities=19%  Similarity=0.168  Sum_probs=181.6

Q ss_pred             hHHHHHHHHHHHhCCCCCCE--EEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC
Q 011669          141 HAIADFAEALASKMPGNLKV--VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~--v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g  218 (480)
                      ....+..+.++++++.+.++  .+||+||||||..|+..+|...+++.|++ ...-|.....+....+..          
T Consensus        65 ~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~-s~~~H~Sv~ka~~~lg~~----------  133 (380)
T PRK02769         65 DFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYY-SKDTHYSVSKIARLLRIK----------  133 (380)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEe-CCCceehHHHHHHHcCCC----------
Confidence            45567888888888754343  48999999999999999987655544544 444555444333322211          


Q ss_pred             eeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC---CEEEEcc
Q 011669          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG---GLCIADE  295 (480)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g---illI~DE  295 (480)
                      ...++...  .+.  -|    .++|++.++.. ...+.+|++...+++.|.+.|    +++|.++|++||   +++++|-
T Consensus       134 ~~~V~~~~--~g~--id----~~~L~~~i~~~-~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDa  200 (380)
T PRK02769        134 SRVITSLP--NGE--ID----YDDLISKIKEN-KNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADA  200 (380)
T ss_pred             CceeccCC--CCc--Cc----HHHHHHHHHhC-CCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEe
Confidence            11122111  111  13    67888888753 335888999999999999988    999999999998   6999999


Q ss_pred             cccCcccc---CCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCCCc-----cccCCC--cHHHHHH
Q 011669          296 VQAGFART---GSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNY-----FNTFGG--NPVCTAA  363 (480)
Q Consensus       296 v~tgfgr~---G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~~~-----~~t~~~--~~~~~aa  363 (480)
                      +|.|+-..   ....+.+  .. ..|.++++  |.+++..++|.++.+++..+.+.....     -.|+.|  |..+.++
T Consensus       201 A~gg~~~p~~~~~~~~d~--~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~  277 (380)
T PRK02769        201 ALSGMILPFVNNPPPFSF--AD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALL  277 (380)
T ss_pred             cccceeecccCccccCCc--cC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHH
Confidence            99874211   0001211  12 57888887  877767899999999887665532111     123333  3456677


Q ss_pred             HHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcC
Q 011669          364 GHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMG  440 (480)
Q Consensus       364 a~a~L~~i~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G  440 (480)
                      ..++|+.+..++   ..++..++.+++.++|++.    +...-.....+.  +.|..      |.    ..+.     +|
T Consensus       278 lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~----g~~~~~~p~~~~--v~f~~------~~----~~~~-----~~  336 (380)
T PRK02769        278 LWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN----GIPAWRNPNSIT--VVFPC------PS----ERIW-----KK  336 (380)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC----CCEEEcCCCceE--EEEcC------CC----HHHH-----hC
Confidence            778888776654   4566666777777777653    221112222222  23321      21    1121     56


Q ss_pred             ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ..+.+..   +.+|+.....++++.||.+++.|.+.+.
T Consensus       337 w~l~~~~---~~~hi~~~~~~~~~~~~~f~~dl~~~~~  371 (380)
T PRK02769        337 WHLATSG---NQAHIITMPHHNKQQIDSLIDELIFDLK  371 (380)
T ss_pred             eeEcccC---CEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            6665443   4788888888899999999999987654

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.66  E-value=8.7e-14  Score=145.04  Aligned_cols=323  Identities=18%  Similarity=0.179  Sum_probs=187.5

Q ss_pred             CCCHHHHHHHHHHHHhcc-ccc-----cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------c
Q 011669          115 HCHPYVVDSIVNQIKRIQ-HST-----VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------T  182 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~-~~~-----~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~  182 (480)
                      |.+|.+.+++.+...... |..     ..+..+.+.++.+.++++++.+ +..++.++|+.+...++.+++.+      +
T Consensus        81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~-~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~  159 (481)
T PRK04366         81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD-AVTLQPAAGAHGELTGLLMIRAYHEARGDT  159 (481)
T ss_pred             CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC-ceEEEeCcHHHHHHHHHHHHHHHhhccCcC
Confidence            677899998887522111 111     0112245567888888888654 34556677877776665544432      1


Q ss_pred             CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc
Q 011669          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES  262 (480)
Q Consensus       183 ~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep  262 (480)
                      ++++|++.++.|+.... .....            |+..+.+|..  ..+..|    .+++++.++    +++++|++..
T Consensus       160 ~~~~Vlv~~~~hp~~~~-~~~~~------------G~~vv~v~~~--~~~~~D----~e~L~~~i~----~~t~~V~v~~  216 (481)
T PRK04366        160 KRTEVIVPDSAHGTNPA-SAAMA------------GFKVVEIPSN--EDGLVD----LEALKAAVG----EDTAALMLTN  216 (481)
T ss_pred             CCCEEEEcCCccHhHHH-HHHHc------------CCEEEEeecC--CCCCcC----HHHHHhhcc----cCCeEEEEeC
Confidence            33478888876654443 22221            3333333221  112223    567777774    2566666654


Q ss_pred             cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--ccccc-----cCcccccc
Q 011669          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIG-----NGIPLGAV  335 (480)
Q Consensus       263 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g-----~G~pig~v  335 (480)
                      .+ .+|.+   ...+++|.++|+++|+++|+|++|. .+..| .. ....+  ..|++++  -|.++     ||..+|++
T Consensus       217 Pn-~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g-~~-~~~~~--GaD~~~~~~hK~l~~P~g~Ggp~~G~l  287 (481)
T PRK04366        217 PN-TLGLF---ERNILEIAEIVHEAGGLLYYDGANL-NAILG-KA-RPGDM--GFDVVHLNLHKTFSTPHGGGGPGSGPV  287 (481)
T ss_pred             CC-Ccccc---chHHHHHHHHHHHcCCEEEEEecCh-hhhcc-cC-Ccccc--CCCEEEEechhhcCCCCCCCCCCeeee
Confidence            44 56654   1239999999999999999999985 33233 11 11222  3588765  39887     33457788


Q ss_pred             ccCHHHHHhhcCCCc-------------------cccCCCcHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHH
Q 011669          336 VTTPEIAEVLTRRNY-------------------FNTFGGNPVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTA  393 (480)
Q Consensus       336 ~~~~~~~~~l~~~~~-------------------~~t~~~~~~~~aaa~a~L~~i~~~~~~---~~~~~~~~~l~~~L~~  393 (480)
                      .+++++.+.+.....                   .-.+.++.+...+++..+..+-.+.+.   ++...+.++++++|.+
T Consensus       288 ~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~  367 (481)
T PRK04366        288 GVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKD  367 (481)
T ss_pred             eehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            888887776632110                   011223445555555556655555443   4556678888888887


Q ss_pred             hHHhcCceeeEeccc-eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---CCCEEEEeCCCCCCHHHHHHH
Q 011669          394 LKDKYGIIGDVRGRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---YGNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       394 l~~~~~~~~~v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~~~~t~~~id~~  469 (480)
                      +   +....  .+.. ....+.+..-..   + ......+.+.|.++|+.+.....   ..+.+|+++...+|++|||.+
T Consensus       368 ~---~~~~~--~~~~~~~~~~~~~~~~~---~-g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l  438 (481)
T PRK04366        368 I---YDLPY--DRPCMHEFVLSGKKLKE---T-GVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAF  438 (481)
T ss_pred             h---CcccC--CCCeeEEEEEECccccc---c-CCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHH
Confidence            6   22221  1110 011122110000   0 11256799999999998763211   146899999999999999999


Q ss_pred             HHHHHHHHhh
Q 011669          470 VDVMDYSLSK  479 (480)
Q Consensus       470 l~~l~~~l~~  479 (480)
                      ++.|+++.++
T Consensus       439 ~~~l~~i~~~  448 (481)
T PRK04366        439 IAAMKQIAEE  448 (481)
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.66  E-value=2.3e-14  Score=143.91  Aligned_cols=235  Identities=17%  Similarity=0.116  Sum_probs=151.3

Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ...++.++...+|+++|+++.+  .+.++.++||++|+.+++.+ .  .++++||+..+.|++.... +....       
T Consensus        47 ~Y~R~~~p~~~~le~~lA~leg--~~~~v~~~sG~aAi~~~l~~-l--~~GD~VI~~~~~yg~~~~~-~~~~~-------  113 (364)
T PRK07269         47 DYTRTKNPTRAKLEETLAAIES--ADYALATSSGMSAIVLAFSV-F--PVGSKVVAVRDLYGGSFRW-FNQQE-------  113 (364)
T ss_pred             ceeCCCCccHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHH-h--CCCCEEEEecCCcCchHHH-HHHHH-------
Confidence            3466788999999999999984  46899999999999999853 2  3678899988888543321 11100       


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                       +..++...         |..|    .+++++.++    +++++|++|.+.|++|.+..    +++|.++|+++|+++|+
T Consensus       114 -~~~~~~~~---------~~~d----~~~l~~~i~----~~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvv  171 (364)
T PRK07269        114 -KEGRFHFT---------YANT----EEELIAAIE----EDTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIV  171 (364)
T ss_pred             -hcCcEEEE---------ecCC----HHHHHHhcC----cCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEE
Confidence             00112111         1123    467777774    36789999988888887775    99999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCcceee--ecccccc-C-cccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHH
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~-G-~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L  368 (480)
                      ||++..    +  .+ ....+...|+++  ++|.++| | .=.|+|++ ++++.+.+...........+|+.++.++..|
T Consensus       172 D~t~~~----~--~~-~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L  244 (364)
T PRK07269        172 DNTFYS----P--IY-QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGL  244 (364)
T ss_pred             ECCCcc----c--cc-CCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCC
Confidence            999641    1  11 122344567775  5699985 3 33467776 4667766643221122445788887777766


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE--eccceeEEEEEe
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV--RGRGFLLGVEFV  416 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v--~g~g~~~~i~~~  416 (480)
                      +.+  +...++.+++..++.+.    .+.+|.+..+  ++.|.++.|++.
T Consensus       245 ~tL--~~r~~~~~~na~~~a~~----L~~~p~v~~v~ypg~gg~~sf~~~  288 (364)
T PRK07269        245 KTL--SLRMERSTANAQEVVAF----LKKSPAVKEVLYTGKGGMISFKVA  288 (364)
T ss_pred             CcH--HHHHHHHHHHHHHHHHH----HHhCCCccEEeCCCcCcEEEEEEC
Confidence            643  22333344444444444    4456654433  577888888873

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.65  E-value=4.8e-14  Score=143.61  Aligned_cols=237  Identities=19%  Similarity=0.121  Sum_probs=152.8

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..++.++...+|+++|+++.+.  +..++++||++|+..++....  .+++.|++..+.|++.........         
T Consensus        54 y~R~~~p~~~~Le~~lA~l~g~--~~~v~~~sG~~Ai~~~l~all--~pGD~Vvv~~p~Y~~t~~~~~~~~---------  120 (405)
T PRK08776         54 YTRSGNPTRDLLGEALAELEGG--AGGVITATGMGAINLVLNALL--QPGDTLVVPHDAYGGSWRLFNALA---------  120 (405)
T ss_pred             ccCCCChHHHHHHHHHHHHhCC--CceEEEcCHHHHHHHHHHHHh--CCCCEEEEccCCchHHHHHHHHHH---------
Confidence            4567788889999999998864  345688889999998887653  367889999999976322111110         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+....++.       .|    .+++++.++    +++++|+++..+|++|.+..    +++|.++|++||+++|+|
T Consensus       121 ~~~g~~v~~v~~-------~d----~~~l~~~i~----~~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD  181 (405)
T PRK08776        121 KKGHFALITADL-------TD----PRSLADALA----QSPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVD  181 (405)
T ss_pred             HhcCcEEEEECC-------CC----HHHHHHhcC----cCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEE
Confidence            001333332221       12    466777764    26788888888888888755    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc--Ccccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~--G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      |+|..-...  ..  .+   ...|++  +.+|.+++  +...|++++ ++++.+.+........+..+|+.+.+.+..++
T Consensus       182 ~a~a~~~~~--~p--l~---~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~  254 (405)
T PRK08776        182 NTFLSPALQ--KP--LE---FGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLR  254 (405)
T ss_pred             CCCcccccC--Cc--cc---ccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhC
Confidence            999632111  11  11   234666  56699984  467788876 46777766543222334568888888777666


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee------------------eEeccceeEEEEEe
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG------------------DVRGRGFLLGVEFV  416 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~  416 (480)
                      .+  +...++..++...+.+.|++    +|.+.                  ...|.|.|+.|++.
T Consensus       255 tl--~~r~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~  313 (405)
T PRK08776        255 TL--DARLRVHQENADAIAALLDG----HAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELE  313 (405)
T ss_pred             cH--HHHHHHHHHHHHHHHHHHHc----CCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEc
Confidence            54  22344455555555555443    33322                  12467888999884

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.65  E-value=2.7e-14  Score=146.36  Aligned_cols=166  Identities=19%  Similarity=0.202  Sum_probs=119.7

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..++.++...+|+++|+++.+.  +.+++++||++|+..+++.+..  ++++||+..+.|+|........         .
T Consensus        51 ysr~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~~--~Gd~Vl~~~~~y~~t~~~~~~~---------~  117 (418)
T TIGR01326        51 YSRLMNPTTDVLEQRIAALEGG--VAALAVASGQAAITYAILNLAQ--AGDNIVSSSYLYGGTYNLFKHT---------L  117 (418)
T ss_pred             eECCCChhHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHHHHHH---------H
Confidence            4567788899999999999864  5688999999999999986643  5778999999887643221110         0


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+....++.       +|    .++++++++    +++++|++|.++|++|.+.+    +++|.++|++||+++|+|
T Consensus       118 ~~~G~~v~~v~~-------~d----~~~l~~~l~----~~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD  178 (418)
T TIGR01326       118 KRLGIEVRFVDP-------DD----PEEFEKAID----ENTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVD  178 (418)
T ss_pred             HHcCcEEEEECC-------CC----HHHHHHhcC----cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEE
Confidence            011333333321       12    567777774    36789999999899998876    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-CccccccccCH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVTTP  339 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pig~v~~~~  339 (480)
                      |+|. .+..      .......+|++  +++|.+++ |+++|++++++
T Consensus       179 ~t~~-~~~~------~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       179 NTFA-TPYL------CRPIDHGADIVVHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             CCCc-hhhc------CCchhcCCeEEEECccccccCCccceEEEEEec
Confidence            9985 2211      11122345766  68899996 89999988864

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.65  E-value=1.6e-13  Score=140.19  Aligned_cols=331  Identities=15%  Similarity=0.078  Sum_probs=196.4

Q ss_pred             CCCHHHHHHHHHHHHhc-ccccc-ccCChHHHHHHHHHHHhCCCC-C-CEEEE--eCCHHHHHHHHHHHHHhhc------
Q 011669          115 HCHPYVVDSIVNQIKRI-QHSTV-LYLNHAIADFAEALASKMPGN-L-KVVFF--TNSGTEANELAIMMARLYT------  182 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~-~~~~~-~~~~~~~~~l~e~L~~~~~~~-~-~~v~f--~~sGseA~~~Alk~ar~~~------  182 (480)
                      ..+|++.+++.+.+.+. .+... ........+..+++++.++.+ . +++.|  |+||||||..||+.+|...      
T Consensus        52 ~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~  131 (431)
T TIGR01788        52 WMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEA  131 (431)
T ss_pred             CCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHh
Confidence            45799999998888643 22111 111356678889999998765 2 34555  7999999999998876421      


Q ss_pred             -C---CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          183 -G---CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       183 -~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                       +   ....|+....-|-....+....+.          .+..++... ..  +.-|    .++|+++|+.    ++.+|
T Consensus       132 ~g~~~~~~~ii~s~~~H~sv~ka~~~lg~----------~v~~i~~d~-~~--~~vd----~~~L~~~i~~----~t~lV  190 (431)
T TIGR01788       132 AGKPTDKPNLVMGSNVQVCWEKFARYFDV----------ELREVPMDP-GR--YVID----PEQVVEAVDE----NTIGV  190 (431)
T ss_pred             cCCCCCCcEEEEcCcchHHHHHHHHHcCc----------eeEEEecCC-Cc--eeeC----HHHHHHHHhh----CCeEE
Confidence             1   122455555555444333222211          222333211 00  0012    6788888863    57789


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHh------CCEEEEcccccCccc---cCCCcccccccCCCcceeeec--cccc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKA------GGLCIADEVQAGFAR---TGSHFWGFEAHGVVPDIVTMA--KGIG  327 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~tgfgr---~G~~~~~~~~~~~~pDivt~s--K~~g  327 (480)
                      ++.-.+++.|.+.|    +++|.++|+++      |+++++|-+|.|+-.   .+...+.+.  ....|.++++  |.+.
T Consensus       191 ~~t~g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--~~~~DSis~s~HK~~~  264 (431)
T TIGR01788       191 VCILGTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--LPRVKSINVSGHKYGL  264 (431)
T ss_pred             EEEeCCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--CCCceEEEECchhccC
Confidence            99999999999998    99999999999      999999999987421   221111122  2246788887  7765


Q ss_pred             cCccccccccCHH--HHHhhcCC-------CccccCCCc-H-HHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHH
Q 011669          328 NGIPLGAVVTTPE--IAEVLTRR-------NYFNTFGGN-P-VCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       328 ~G~pig~v~~~~~--~~~~l~~~-------~~~~t~~~~-~-~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~  393 (480)
                      +...+|+++.+++  +.+.+...       ....++.+. + ....+.+..|..+..+   +..++..++.+++.++|++
T Consensus       265 ~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~  344 (431)
T TIGR01788       265 VYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAK  344 (431)
T ss_pred             CCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6677898887754  32332210       000122222 2 1223344444444333   4455666677777777766


Q ss_pred             hHHhcCceeeEe--ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee----ccCc-CCCEEEEeCCCCCCHHHH
Q 011669          394 LKDKYGIIGDVR--GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG----KGGF-YGNVFRITPPLCFTKEDA  466 (480)
Q Consensus       394 l~~~~~~~~~v~--g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~~-~~~~iRi~p~~~~t~~~i  466 (480)
                      +    +.+.-+.  ....++.|.+..+..    .......+.+.|.++|+.+.    |... ...++|++..-.++++.+
T Consensus       345 ~----~~~el~~~~~~~~iV~Fr~~~~~~----~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~  416 (431)
T TIGR01788       345 L----GPFEIISDGSGIPLVAFKLKDDAD----PGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLA  416 (431)
T ss_pred             C----CCEEEeeCCCCceEEEEEeCCCCC----CCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHH
Confidence            4    3222121  133344455432110    11124668889999998642    2211 124689887667889999


Q ss_pred             HHHHHHHHHHHhhC
Q 011669          467 DYLVDVMDYSLSKM  480 (480)
Q Consensus       467 d~~l~~l~~~l~~~  480 (480)
                      +.+++.|++++..+
T Consensus       417 ~~~~~~~~~~~~~~  430 (431)
T TIGR01788       417 ELLIEDIEAALAYL  430 (431)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988653

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.64  E-value=6.2e-14  Score=142.97  Aligned_cols=219  Identities=16%  Similarity=0.092  Sum_probs=143.8

Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ..+.+.++...+|+++|+++.+.  +..+.++||+.|+..+++..  ..++++||+..+.| +.+.......        
T Consensus        58 ~y~r~~~p~~~~le~~lA~l~g~--~~~i~~~sG~~Al~~~l~~l--l~~Gd~Viv~~~~y-~~t~~~~~~~--------  124 (403)
T PRK07503         58 FYSRISNPTLALLEQRMASLEGG--EAAVALASGMGAITATLWTL--LRPGDEVIVDQTLY-GCTFAFLHHG--------  124 (403)
T ss_pred             eeeCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHH--cCCCCEEEEccCcc-chHHHHHHHH--------
Confidence            34567788899999999999865  34678889999999998754  34677888887766 3332211100        


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                      ....|+....++.       .|    .+++++.++    +++++|++|.+++++|.+.+    +++|.++|++||+++|+
T Consensus       125 ~~~~G~~v~~vd~-------~d----~~~l~~~i~----~~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIv  185 (403)
T PRK07503        125 LGEFGVTVRHVDL-------TD----PAALKAAIS----DKTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVV  185 (403)
T ss_pred             HhhCCEEEEEeCC-------CC----HHHHHHhcC----ccCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEE
Confidence            0112444333221       12    466777774    26789999988888898876    99999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCHHHHHhhcCC--CccccCCCcHHHHHHHHHH
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aaa~a~  367 (480)
                      |++|... ..+ ..     .+...|++  +++|.+++ | .+.|+++.++++++.+...  ........+|+.++.++..
T Consensus       186 D~a~a~~-~~~-~~-----l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~  258 (403)
T PRK07503        186 DNTYCTP-YLQ-RP-----LELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRG  258 (403)
T ss_pred             ECCCccc-ccC-Cc-----hhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcC
Confidence            9999632 222 11     12234655  57899996 5 7889999889988877532  2222355678888777777


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHH
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~  393 (480)
                      |+.+.  ...++..++...+.+.|++
T Consensus       259 L~tl~--~r~~~~~~na~~~a~~L~~  282 (403)
T PRK07503        259 LKTLA--LRMDRHCASAQAVAEWLAR  282 (403)
T ss_pred             cchHH--HHHHHHHHHHHHHHHHHHh
Confidence            66442  2223333444445454443

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.64  E-value=8.1e-14  Score=141.30  Aligned_cols=311  Identities=14%  Similarity=0.099  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccc
Q 011669          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (480)
Q Consensus       118 p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~  197 (480)
                      ++-.+++.+.+...+.    +..+...+|+++++++++.  +.+++++||++|+.++++... ..++++||+..++|.+.
T Consensus        14 ~~e~~~~~~~l~~~~~----~~g~~~~~le~~la~~~g~--~~~v~~~sgt~al~lal~al~-~~~Gd~Viv~~~~~~~~   86 (379)
T PRK11658         14 DEELAAVKEVLRSGWI----TTGPKNQALEQAFCQLTGN--QHAIAVSSATAGMHITLMALG-IGPGDEVITPSLTWVST   86 (379)
T ss_pred             HHHHHHHHHHHHcCCc----cCCHhHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcC-CCCCCEEEECCCcHHHH
Confidence            5567777777765422    3457789999999999964  568899999999999998652 23678899999998765


Q ss_pred             cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChH
Q 011669          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  277 (480)
                      .......             |+..+.++... ..|..|    .+++++.++    +++++|+  |++. .|...+    +
T Consensus        87 ~~~~~~~-------------G~~~v~vd~~~-~~~~~d----~~~l~~~i~----~~tkav~--~~~~-~G~~~d----~  137 (379)
T PRK11658         87 LNMIVLL-------------GATPVMVDVDR-DTLMVT----PEAIEAAIT----PRTKAII--PVHY-AGAPAD----L  137 (379)
T ss_pred             HHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHhcc----cCCeEEE--EeCC-CCCcCC----H
Confidence            4332221             33333222111 112223    567777775    2566766  3333 555544    8


Q ss_pred             HHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec--cccccCccccccccC-HHHHHhhcCCC-c--
Q 011669          278 PAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT-PEIAEVLTRRN-Y--  350 (480)
Q Consensus       278 ~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~-~~~~~~l~~~~-~--  350 (480)
                      ++|.++|++||+++|+|++|+ |....| ..  ...++.  ++.+|+  |.+.+| +.|+++.+ +++.+.+.... +  
T Consensus       138 ~~i~~~a~~~gi~vi~D~a~a~g~~~~~-~~--~g~~g~--~~~Sf~~~K~l~~g-~GG~v~~~~~~~~~~~~~~~~~G~  211 (379)
T PRK11658        138 DAIRAIGERYGIPVIEDAAHAVGTYYKG-RH--IGARGT--AIFSFHAIKNITCA-EGGLVVTDDDELADRLRSLKFHGL  211 (379)
T ss_pred             HHHHHHHHHcCCeEEEECCCccCCeECC-ee--cCCCCC--EEEeCCCCCcCccc-CceEEEECCHHHHHHHHHHHHcCC
Confidence            999999999999999999997 322222 11  112332  667776  666554 56777764 67766554211 0  


Q ss_pred             ---------------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee-eEeccc
Q 011669          351 ---------------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRGRG  408 (480)
Q Consensus       351 ---------------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~v~g~g  408 (480)
                                           +..+..+.+..+.++..|+.+  ++..++.+++.+++++.|.++.-. .... ......
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l--~~~~~~r~~~a~~~~~~L~~~~~~-~~~~~~~~~~~  288 (379)
T PRK11658        212 GVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKL--EALNARRREIAARYLQALADLPFQ-PLSLPAWPHQH  288 (379)
T ss_pred             CcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCc-cCcCCCCCCce
Confidence                                 011222344555555555433  345566666666777766654100 0100 000111


Q ss_pred             e--eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC----------------c-------CCCEEEEeCCCCCCH
Q 011669          409 F--LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG----------------F-------YGNVFRITPPLCFTK  463 (480)
Q Consensus       409 ~--~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------~-------~~~~iRi~p~~~~t~  463 (480)
                      .  ++.+.+...     ......+.+.+.|.++||-++...                .       ....+.+-.....|+
T Consensus       289 ~~~~~~~~~~~~-----~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~  363 (379)
T PRK11658        289 AWHLFIIRVDEE-----RCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTD  363 (379)
T ss_pred             eEEEEEEEECCc-----cccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCH
Confidence            1  112222111     001124678899999998765210                0       012333322344789


Q ss_pred             HHHHHHHHHHHHHHh
Q 011669          464 EDADYLVDVMDYSLS  478 (480)
Q Consensus       464 ~~id~~l~~l~~~l~  478 (480)
                      +|++.+++.|++++.
T Consensus       364 ~~~~~i~~~i~~~~~  378 (379)
T PRK11658        364 ADVDRVITALQQIAG  378 (379)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998764

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.63  E-value=7.1e-14  Score=141.89  Aligned_cols=237  Identities=19%  Similarity=0.089  Sum_probs=148.4

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ...+.++...+|+++|+++.+..  ..+.++||++|+..++....  .++++||+..+.|.+.........         
T Consensus        55 Y~r~~~p~~~~Le~~lA~~~g~~--~~i~~~sG~~Ai~~~l~all--~~Gd~Vl~~~~~y~~t~~~~~~~~---------  121 (388)
T PRK07811         55 YARTGNPTRTALEEQLAALEGGA--YGRAFSSGMAATDCLLRAVL--RPGDHIVIPNDAYGGTFRLIDKVF---------  121 (388)
T ss_pred             ccCCCCccHHHHHHHHHHHhCCC--ceEEeCCHHHHHHHHHHHHh--CCCCEEEEcCCCchHHHHHHHHhC---------
Confidence            34567788999999999998653  34566899999999998664  367889999999865322111110         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+.....+.       .|    .+++++.++    +++++|++|.++|++|.+..    +++|.++|++||+++|+|
T Consensus       122 ~~~gi~~~~~d~-------~d----~e~l~~~i~----~~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD  182 (388)
T PRK07811        122 TRWGVEYTPVDL-------SD----LDAVRAAIT----PRTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVD  182 (388)
T ss_pred             cCCCeEEEEeCC-------CC----HHHHHHhcC----cCCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEE
Confidence            011333222211       12    567777764    36789999988888887765    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      |+|... ..+ ..     .+...|++  +++|.+++ | ...|+++++ +++.+.+...........+|..+..++..|+
T Consensus       183 ~a~a~~-~~~-~p-----~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~  255 (388)
T PRK07811        183 NTFASP-YLQ-QP-----LALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLK  255 (388)
T ss_pred             CCCCcc-ccC-Cc-----hhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC
Confidence            998632 222 11     12234655  57799985 3 567888875 6666655432222223345666555555554


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEe
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~  416 (480)
                      .+  +...++..++...+.+.|++    ++.+..                  ..|.|.|+.|++.
T Consensus       256 tl--~~R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~  314 (388)
T PRK07811        256 TL--AVRMDRHSENAEAVAEFLAG----HPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA  314 (388)
T ss_pred             cH--HHHHHHHHHHHHHHHHHHHh----CCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeC
Confidence            32  22334444455555555543    333221                  2466888889884

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.63  E-value=4.6e-14  Score=142.95  Aligned_cols=217  Identities=19%  Similarity=0.117  Sum_probs=139.1

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..++.++...+|+++++++.+.  +.+++++||++|+..++....  .+++.|++..+.|++.......+.         
T Consensus        47 y~r~~np~~~~lE~~lA~l~g~--~~~l~~~sG~~Ai~~~l~~ll--~~GD~Vlv~~~~y~~~~~~~~~~~---------  113 (385)
T PRK08574         47 YSREENPTLRPLEEALAKLEGG--VDALAFNSGMAAISTLFFSLL--KAGDRVVLPMEAYGTTLRLLKSLE---------  113 (385)
T ss_pred             EECCCCccHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHh--CCCCEEEEcCCCchhHHHHHHHhh---------
Confidence            4566788999999999999964  467788999999999987553  367889999988876443221111         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                       ..|+......        .|    .+++++.++.   .++++|++|.++|++|.+.+    +++|.++|+++|+++|+|
T Consensus       114 -~~g~~v~~~~--------~d----~~~l~~~i~~---~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD  173 (385)
T PRK08574        114 -KFGVKVVLAY--------PS----TEDIIEAIKE---GRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVD  173 (385)
T ss_pred             -ccCcEEEEEC--------CC----HHHHHHhcCc---cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEE
Confidence             0122221110        12    4667777752   26789999999999998876    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-Cccc-ccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pi-g~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      |+|. .+... .  .. .+|  .|++  +++|.++| |-.+ |++++ ++++.+.+...........+|+.++.++..|+
T Consensus       174 ~t~a-~~~~~-~--~l-~~G--aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~  246 (385)
T PRK08574        174 NTFA-TPLLY-R--PL-RHG--ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLK  246 (385)
T ss_pred             CCCC-ccccC-C--hh-hhC--CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC
Confidence            9985 22111 1  11 134  3555  67899985 5443 54554 67777765532222233455777776666665


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHH
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~  393 (480)
                      .+.  ...++..++..++.+.|++
T Consensus       247 tL~--~R~~~~~~na~~la~~L~~  268 (385)
T PRK08574        247 TLE--VRFERQCRNAMAIAEFLSE  268 (385)
T ss_pred             cHH--HHHHHHHHHHHHHHHHHHc
Confidence            442  2334444455555555543

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.63  E-value=9.5e-14  Score=138.78  Aligned_cols=315  Identities=12%  Similarity=0.043  Sum_probs=187.2

Q ss_pred             CCHHHHHHHHHHHHhcc--ccc----cccCC---hHHHHHHHHHHHhCCC-CCCEEEEe-CCHHHHHHHHHHHHHhhcCC
Q 011669          116 CHPYVVDSIVNQIKRIQ--HST----VLYLN---HAIADFAEALASKMPG-NLKVVFFT-NSGTEANELAIMMARLYTGC  184 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~--~~~----~~~~~---~~~~~l~e~L~~~~~~-~~~~v~f~-~sGseA~~~Alk~ar~~~~~  184 (480)
                      .+..|++++.+.+....  +..    .....   ....+..+.|.+++.. ...+|+|+ +|||+|+|+++.....  ++
T Consensus         3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~--~~   80 (349)
T TIGR01364         3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA--EG   80 (349)
T ss_pred             CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC--CC
Confidence            35689999988877432  110    01111   4567788888888864 22345555 5699999999986543  56


Q ss_pred             ceEEEEcCCcccccccccccccCCCccccccCCCe-eEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEccc
Q 011669          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV-HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI  263 (480)
Q Consensus       185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi  263 (480)
                      +++++...+..|....-+....           |. ..+..+  ...+|+..     .++++...   ..++.+|.+-.+
T Consensus        81 ~~~l~i~~G~fg~r~~~~a~~~-----------g~~~~~~~~--~~~~~~~~-----~~~~~~~~---~~~~~~v~~th~  139 (349)
T TIGR01364        81 KVADYIVTGAWSKKAAKEAKKY-----------GVVNVVASG--KEGNYTKI-----PDPSTWEI---SEDAAYVHYCAN  139 (349)
T ss_pred             CeEEEEECCHHHHHHHHHHHHh-----------CCcEEEecc--ccCCCCCC-----CCHHhcCC---CCCCCEEEEcCC
Confidence            7777777888776664333221           22 111111  11223221     12222221   135777777777


Q ss_pred             CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHH
Q 011669          264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEI  341 (480)
Q Consensus       264 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~  341 (480)
                      -+++|+..+         ++++.+++++|+|-||+ +|-.   ....+.+    |++++|  |++| .-.+|.+++++++
T Consensus       140 ETstGv~~~---------~l~~~~~~l~iVDavss-~g~~---~id~~~~----d~~~~ssqK~lg-P~Glg~l~~s~~~  201 (349)
T TIGR01364       140 ETIHGVEFR---------ELPDVKNAPLVADMSSN-ILSR---PIDVSKF----GLIYAGAQKNIG-PAGLTVVIVRKDL  201 (349)
T ss_pred             CCcccEecc---------eecccCCCeEEEEcccc-ccCc---cCCHHHc----cEEEEecccccC-CCceEEEEECHHH
Confidence            777887653         67777899999999997 4322   2222322    466655  9986 3447899999998


Q ss_pred             HHhhcCCC-----------ccccC-CCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          342 AEVLTRRN-----------YFNTF-GGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       342 ~~~l~~~~-----------~~~t~-~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                      .+.+.+..           ...++ +.|-....+..++|+.+.++    ++.++.+++.+++++.|+++..-+.......
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~  281 (349)
T TIGR01364       202 LGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPR  281 (349)
T ss_pred             HhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHH
Confidence            87664421           01223 33445556666788888654    3445556666666666666521001101101


Q ss_pred             ccc-eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          406 GRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       406 g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+. ..+.+.+..        ......+...+.++|+.+.++....+.+|+++...+|++|||.++++|++++++
T Consensus       282 ~rs~~v~sf~~~~--------~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       282 NRSRMNVVFTLGN--------EELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             HcCCeEEEEecCC--------hhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            122 333443311        112355667888999966555322468999999999999999999999998764

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.63  E-value=6.8e-14  Score=140.50  Aligned_cols=307  Identities=13%  Similarity=0.081  Sum_probs=190.1

Q ss_pred             CCHHHHHHHHHHHHhc----------cccccccCChHHHHHHHHHHHhCCC--CCCEEEEeCCHHHHHHHHHHHHHhhcC
Q 011669          116 CHPYVVDSIVNQIKRI----------QHSTVLYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEANELAIMMARLYTG  183 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~----------~~~~~~~~~~~~~~l~e~L~~~~~~--~~~~v~f~~sGseA~~~Alk~ar~~~~  183 (480)
                      .+++|++|+.+++.+.          .|....+ .+...+..++|+++++.  +.+.+++.+||+.|+|+++.....  +
T Consensus        14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f-~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~--~   90 (360)
T PRK05355         14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEF-EAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG--G   90 (360)
T ss_pred             CCHHHHHHHHHHhhccccCCccccccCCCCHHH-HHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC--C
Confidence            5799999999887432          2222111 25678889999999874  234556668999999999876543  4


Q ss_pred             CceEEEEcCCcccccccccccccCCCccccccCCCee-EecCCCCcCCCCCC-ChHHHHHHHHH-HHHccCCCceEEEEE
Q 011669          184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH-HALNPDPYRGVFGA-DGEMYAKDVQD-LIDFGTSGHVAGFLS  260 (480)
Q Consensus       184 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~-~~~~p~~~~~~~~~-d~~~~~~~le~-~i~~~~~~~~a~vi~  260 (480)
                      +++++....+..|....-+.-..           |.. .+..+..    |+. +    ..++++ .++    .++++|.+
T Consensus        91 g~~~l~i~~G~fg~r~~~~a~~~-----------g~~~~~~~~~~----~g~~~----~~~~~~~~l~----~~~~~V~~  147 (360)
T PRK05355         91 GKKADYVDTGSWSKKAIKEAKKY-----------GEVNVAASSED----DGFTY----IPPLDEWQLS----DDAAYVHY  147 (360)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHh-----------CCceEEecccc----cCCCC----CCChhhccCC----CCCCEEEE
Confidence            56777777777776653332221           111 1111100    110 0    112222 343    25678888


Q ss_pred             cccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccC
Q 011669          261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT  338 (480)
Q Consensus       261 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~  338 (480)
                      -.+-+++|...++   +++|      ||+++|+|-||+ +|.   .....+.+    |++++|  |++| ...+|.++++
T Consensus       148 th~eTstGv~~~~---i~~i------~g~l~vVDavss-~g~---~~idv~~~----d~~~~ssqK~lg-P~Glg~l~~s  209 (360)
T PRK05355        148 TSNETIDGTEFHE---LPDT------GDVPLVADMSSD-ILS---RPIDVSKF----GLIYAGAQKNIG-PAGLTIVIVR  209 (360)
T ss_pred             ccCCCcceEecCc---cccc------CCCcEEEEcCcc-ccC---ccCCHHHc----cEEEEecccccc-CCceEEEEEC
Confidence            8888888888632   5544      899999999997 442   22222222    466665  9986 3457999999


Q ss_pred             HHHHHhhcCC-C----------ccccCC-CcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669          339 PEIAEVLTRR-N----------YFNTFG-GNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIG  402 (480)
Q Consensus       339 ~~~~~~l~~~-~----------~~~t~~-~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~  402 (480)
                      +++.+.+.+. .          ...+++ .|-....+..++|+.+.++    ++.++.+++.+++++.|+++    +...
T Consensus       210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~----~~~~  285 (360)
T PRK05355        210 EDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSS----DFYR  285 (360)
T ss_pred             HHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC----CCcc
Confidence            9998776552 1          112233 3455566666888888765    45566666677777777665    3221


Q ss_pred             e-----EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          403 D-----VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       403 ~-----v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      .     .+ .+..+.+.+        |.......+...+.++|+.+.++....+.+|+++...+|++|||.+++.|++++
T Consensus       286 ~~~~~~~r-s~~v~sf~~--------~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~  356 (360)
T PRK05355        286 NPVAPEDR-SRMNVPFTL--------ADEELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFE  356 (360)
T ss_pred             cCCChhhc-CCcEEEEEc--------CChHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            1     11 123334433        222233566678889999985543224689999999999999999999999987


Q ss_pred             hh
Q 011669          478 SK  479 (480)
Q Consensus       478 ~~  479 (480)
                      +.
T Consensus       357 ~~  358 (360)
T PRK05355        357 RR  358 (360)
T ss_pred             Hh
Confidence            53

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.63  E-value=9.6e-14  Score=140.26  Aligned_cols=239  Identities=16%  Similarity=0.086  Sum_probs=150.8

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +..+++.++...+|.++|+++.+  .+.+++++||++|+..++....  .+++.|++..+.|.+.........       
T Consensus        45 ~~Y~R~~npt~~~Le~~lA~leg--~e~ivvt~gg~~Ai~~~l~all--~~Gd~Il~~~~~y~~~~~~~~~~~-------  113 (388)
T PRK08861         45 YDYTRSGNPNRGLLEQTLSELES--GKGAVVTNCGTSALNLWVSALL--GPDDLIVAPHDCYGGTYRLFNTRA-------  113 (388)
T ss_pred             ccccCCCCchHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHc--CCCCEEEEcCCchHHHHHHHHHHH-------
Confidence            34567789999999999999985  4789999999999999997653  367889998988864322111110       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                        ...|+....++.       .|    .++++++++    +++++|++|.++|++|.+.+    +++|.++|+++|+++|
T Consensus       114 --~~~gi~v~~vd~-------~d----~e~l~~~i~----~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vI  172 (388)
T PRK08861        114 --NKGDFKVQFVDQ-------SD----AAALDAALA----KKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVA  172 (388)
T ss_pred             --hcCCeEEEEECC-------CC----HHHHHHhcC----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence              011333332221       12    466777664    36789999988888998876    8999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCccee--eecccccc--CccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~--G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~  367 (480)
                      +||+|... . .     ....+...|++  +++|.++|  +...|+++++ +++.+.+...........+|..+...+..
T Consensus       173 vDea~~~~-~-~-----~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rg  245 (388)
T PRK08861        173 VDNTFLTP-V-L-----QKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRG  245 (388)
T ss_pred             EECCcccc-c-c-----CCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhc
Confidence            99999631 1 1     11112345666  56699986  3667888775 55666554322222334457666655544


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee------------------eEeccceeEEEEEe
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG------------------DVRGRGFLLGVEFV  416 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~  416 (480)
                      |+.+.  -..++..+....+.+.|+    .+|.+.                  ...|.|.++.|++.
T Consensus       246 l~Tl~--lR~~~~~~~a~~~a~~L~----~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~  306 (388)
T PRK08861        246 IRTLG--ARMRVHEESAQQILAYLQ----TQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFA  306 (388)
T ss_pred             CCCHH--HHHHHHHHHHHHHHHHHH----hCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeC
Confidence            43321  122333344444444444    333322                  13467888888884

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.62  E-value=2.6e-14  Score=144.21  Aligned_cols=289  Identities=16%  Similarity=0.120  Sum_probs=175.7

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      .+..++....|+++|+++.+.  +.+++++||++|+..++....  .+++.||+.++.|++.....-...         .
T Consensus        45 ~r~gnPt~~~lE~~lA~l~g~--~~~~~~~sG~~Ai~~al~all--~~GD~Vl~~~~~y~~t~~~~~~~~---------~  111 (377)
T TIGR01324        45 GRRGTLTHFALQDAMCELEGG--AGCYLYPSGLAAVTNSILAFV--KAGDHVLMVDSAYEPTRYFCDIVL---------K  111 (377)
T ss_pred             cCCCCccHHHHHHHHHHHhCC--CcEEEECcHHHHHHHHHHHhc--CCCCEEEEcCCCcHHHHHHHHHHH---------H
Confidence            345678889999999999864  568899999999999997653  367889999999987533111000         0


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      ..|+....++.       .+    .+++++.++    +++++|++|.+.+++|.+.+    +++|.++|++||+++|+||
T Consensus       112 ~~gi~v~~~d~-------~~----~e~l~~~i~----~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~  172 (377)
T TIGR01324       112 RMGVDITYYDP-------LI----GEDIATLIQ----PNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDN  172 (377)
T ss_pred             hcCcEEEEECC-------CC----HHHHHHhcC----CCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEEC
Confidence            01222221110       11    145666664    36889999998888887766    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCccee--eecccccc--CccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHh
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~--G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i  371 (480)
                      +|. .|... .     ......|++  +++|.++|  +.-.|+++++++.++.+...........+|..+...+..|+.+
T Consensus       173 t~a-~g~~~-~-----pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl  245 (377)
T TIGR01324       173 TWA-AGLLF-K-----PLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTL  245 (377)
T ss_pred             CCc-ccccc-C-----ccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhH
Confidence            996 33222 1     112345666  45799985  3667889998887776653222222234566555555555432


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHhcCcee------------------eEeccceeEEEEEecCCCcCCCCHHHHHHHH
Q 011669          372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIG------------------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIM  433 (480)
Q Consensus       372 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~  433 (480)
                      .  -..++..+....+.+.|++    +|.+.                  ...+.|.++.|++...      ......++.
T Consensus       246 ~--~R~~~~~~~a~~la~~L~~----~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~------~~~~~~~~~  313 (377)
T TIGR01324       246 G--VRLKQHQESSLAIAKWLSE----QPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRL------TQKQVHAFL  313 (377)
T ss_pred             H--HHHHHHHHHHHHHHHHHHh----CCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCC------CHHHHHHHH
Confidence            1  1233334444444444443    23221                  1236678888888421      122345566


Q ss_pred             HHHHHcCceeeccC---------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          434 DKMKEMGVLVGKGG---------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       434 ~~l~~~Gv~v~~~~---------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.|+-.++.+.-|+                     ..++.|||+..+    |+.+.+++-|+++|+.
T Consensus       314 ~~l~~~~~~~slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGl----E~~~dl~~dl~~al~~  376 (377)
T TIGR01324       314 DHLQLFGLGYSWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGL----ENVDDLKADLKAGFEA  376 (377)
T ss_pred             HhCCcceEeccCCCccceeecCCCCCCHHHHHhccCCCCEEEEEeCC----CCHHHHHHHHHHHHhc
Confidence            66654333322211                     123568988554    4566667777776654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=2.5e-14  Score=139.16  Aligned_cols=310  Identities=20%  Similarity=0.200  Sum_probs=188.5

Q ss_pred             CCCCHHHHHHHHHHHHhccccc-----cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEE
Q 011669          114 GHCHPYVVDSIVNQIKRIQHST-----VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDII  188 (480)
Q Consensus       114 Gh~~p~v~~A~~~~~~~~~~~~-----~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii  188 (480)
                      |.|++.+.+++.+    +.+..     ..+.+....++.+..+++++.. +.+ ..+-|-..|..-+-.   +-++...|
T Consensus       154 g~ca~~~~~~~~k----ygl~~css~~e~G~~~~hkelE~l~A~f~g~e-~a~-vF~mGf~TNs~~~p~---l~~~gsLI  224 (519)
T KOG1357|consen  154 GPCAEASLKSFDK----YGLSRCSSRHEAGTTEEHKELEELVARFLGVE-DAI-VFSMGFATNSMNIPS---LLGKGSLI  224 (519)
T ss_pred             CcCChHHHHHHHH----hcccccccchhcccHHHHHHHHHHHHHhcCCc-ceE-EEeccccccccCcce---eecCCcce
Confidence            4566666666544    43321     1355677888988888888643 333 334444444433321   12455566


Q ss_pred             EEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH----cc-----CCCceEEEE
Q 011669          189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID----FG-----TSGHVAGFL  259 (480)
Q Consensus       189 ~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~----~~-----~~~~~a~vi  259 (480)
                      +.+--.|+.......+++.....+.+                   ||    ..+||++|.    ..     .+-+.-.||
T Consensus       225 iSDelNHaSi~~GaRLSgAtiRVfkH-------------------Nd----m~~LEr~Lrd~I~~gqP~Thrp~kki~ii  281 (519)
T KOG1357|consen  225 ISDELNHASLITGARLSGATTRVFRH-------------------ND----MQGLERLLRDAIVYGQPKTHRPWKKILIC  281 (519)
T ss_pred             eeccccchheeccccccCceEEEEec-------------------CC----HHHHHHHHHHHHhcCCCCcCCcchheeee
Confidence            66777787766665555432221111                   34    445555553    21     123556899


Q ss_pred             EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC--ccccCCCcccccccCCCc---ce--eeecccccc-Ccc
Q 011669          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGVVP---DI--VTMAKGIGN-GIP  331 (480)
Q Consensus       260 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg--fgr~G~~~~~~~~~~~~p---Di--vt~sK~~g~-G~p  331 (480)
                      +|.+..+.|.+..    |+++.++++||..+|+.||+++.  .|++|  ....+.+++.|   ||  .+|.|++|+ |  
T Consensus       282 vegiysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tG--rgvce~~g~d~~dvDImMGtftKSfga~G--  353 (519)
T KOG1357|consen  282 VEGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATG--RGVCEYFGVDPEDVDIMMGTFTKSFGAAG--  353 (519)
T ss_pred             eccceeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCC--cceeeccCCCchhheeecceehhhccccc--
Confidence            9999999999987    99999999999999999999974  34555  22345555543   43  388999994 5  


Q ss_pred             ccccccCHHHHHhhcCCCccccCC--CcHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669          332 LGAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGHAVLKVIQK-------DKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (480)
Q Consensus       332 ig~v~~~~~~~~~l~~~~~~~t~~--~~~~~~aaa~a~L~~i~~-------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  402 (480)
                       |++.+++++++.+.......+++  .+|+.+...+..++.+..       +...++++++..++|..|+..    +++.
T Consensus       354 -Gyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~----gfiv  428 (519)
T KOG1357|consen  354 -GYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM----GFIV  428 (519)
T ss_pred             -ceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC----cEEE
Confidence             67999999999887655444433  234444455666777753       234566677777777766654    1111


Q ss_pred             eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       403 ~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      .-.......-+-+.        .+.....+.+.|+++++.+...++     -....|++.+..+++|++|++++.++++
T Consensus       429 yG~~dSpVvplll~--------~~~k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~  499 (519)
T KOG1357|consen  429 YGNNDSPVVPLLLY--------GPAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRV  499 (519)
T ss_pred             ecCCCCCcceeeec--------CcccccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence            00000000000000        111245577788888776654432     1245799999999999999999999875

>PLN03032 serine decarboxylase; Provisional

Probab=99.62  E-value=5.2e-13  Score=133.70  Aligned_cols=308  Identities=15%  Similarity=0.069  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHHHh-ccccccc-----cCChHHHHHHHHHHHhCCCCCCEE--EEeCCHHHHHHHHHHHHHhhcCCceEEE
Q 011669          118 PYVVDSIVNQIKR-IQHSTVL-----YLNHAIADFAEALASKMPGNLKVV--FFTNSGTEANELAIMMARLYTGCNDIIS  189 (480)
Q Consensus       118 p~v~~A~~~~~~~-~~~~~~~-----~~~~~~~~l~e~L~~~~~~~~~~v--~f~~sGseA~~~Alk~ar~~~~~~~ii~  189 (480)
                      +.+++++.+.+.+ .+.....     .......+..+.+++.++.+.+.+  +||+||||||..|+..+|.+.++ .+++
T Consensus        37 ~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~-~~vi  115 (374)
T PLN03032         37 YGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPD-GILY  115 (374)
T ss_pred             hHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCC-cEEE
Confidence            3456666665542 2221111     124556788889999998765655  99999999999999999875444 3566


Q ss_pred             EcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcc
Q 011669          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (480)
Q Consensus       190 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  269 (480)
                      ....-|-...-+....+.          ++..++...        ++...+++|++.|+.. .+.+.+|++.-.+++.|.
T Consensus       116 ~s~~~H~Sv~kaa~~lg~----------~~~~V~~d~--------~g~id~~~L~~~i~~~-~~~~~lvv~tagtt~tG~  176 (374)
T PLN03032        116 ASRESHYSVFKAARMYRM----------EAVKVPTLP--------SGEIDYDDLERALAKN-RDKPAILNVNIGTTVKGA  176 (374)
T ss_pred             eCCCceeHHHHHHHHcCC----------CCeEeeeCC--------CCcCcHHHHHHHHHHc-CCCCEEEEEEecCcCCcc
Confidence            666667655544433321          222232211        1111267888888743 225678888888889999


Q ss_pred             eeCCCChHHHHHHHHHHhC-----CEEEEcccccCcccc--C-CCcccccccCCCcceeeec--cccccCccccccccCH
Q 011669          270 IELAPGYLPAVYKSIKKAG-----GLCIADEVQAGFART--G-SHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTP  339 (480)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~g-----illI~DEv~tgfgr~--G-~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~  339 (480)
                      +.|    +++|.++|++||     +++++|-+|.|+-..  . ...+.+   ....|.++++  |.++...++|+++.++
T Consensus       177 idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~---~~~vDSis~s~HK~~g~P~g~G~ll~r~  249 (374)
T PLN03032        177 VDD----LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF---RKPIGSVSVSGHKFLGCPMPCGVALTRK  249 (374)
T ss_pred             CCC----HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC---CcCCcEEEECcccccCCCcCeEEEEEEc
Confidence            988    999999999997     589999999764110  0 001111   1247888877  7666678899999998


Q ss_pred             HHHHhhcCCCc-----cccCCCc--HHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHhHHhcCceeeEeccce
Q 011669          340 EIAEVLTRRNY-----FNTFGGN--PVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF  409 (480)
Q Consensus       340 ~~~~~l~~~~~-----~~t~~~~--~~~~aaa~a~L~~i~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  409 (480)
                      +..+.+.....     -.|+.++  ....+..+++|+.+-.+.+   .++..++.+++.++|++.    +.........+
T Consensus       250 ~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~p~~~  325 (374)
T PLN03032        250 KHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA----GLTCRLNELSS  325 (374)
T ss_pred             hhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCcEEECCCce
Confidence            77765543211     1234333  3556667777777666554   455566677777777663    22222222222


Q ss_pred             eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      .  +.|..+      ..   ..     ..+|..+.+.   .+.+|+.....++++.+|++++-|++
T Consensus       326 ~--V~f~~~------~~---~~-----~~~~w~l~~~---~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        326 T--VVFERP------MD---EA-----FIKKWQLACE---GDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             E--EEEcCC------Cc---Hh-----Hhheeeeccc---CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence            2  333221      10   11     2256655543   34788887777889999999998875

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.62  E-value=2.8e-13  Score=137.21  Aligned_cols=305  Identities=14%  Similarity=0.125  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccc
Q 011669          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (480)
Q Consensus       118 p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~  197 (480)
                      ++-.+++.+.+...+..   ...+...++++++++.++  .+++++++||++|+.+++..+. ..+++.||+..++|.+.
T Consensus        11 ~~~~~~~~~~l~~~~~~---g~~~~~~~~e~~la~~~g--~~~~v~~~sgt~al~~~l~~~~-~~~Gd~Viv~~~t~~~~   84 (375)
T PRK11706         11 GTELDYIQQAMSSGKLC---GDGGFTRRCQQWLEQRFG--SAKVLLTPSCTAALEMAALLLD-IQPGDEVIMPSYTFVST   84 (375)
T ss_pred             HHHHHHHHHHHHcCCcc---CCCHHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHhC-CCCCCEEEECCCCcHHH
Confidence            34466666666553211   124667888899999874  4789999999999999887542 23678899999998765


Q ss_pred             cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChH
Q 011669          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  277 (480)
                      .......             |...+.++.. ...|..|    .+++++.++.    ++++|++..   ..|....    +
T Consensus        85 ~~~~~~~-------------G~~~v~~d~d-~~~~~~d----~~~le~~i~~----~tk~i~~~~---~~G~~~~----~  135 (375)
T PRK11706         85 ANAFVLR-------------GAKIVFVDIR-PDTMNID----ETLIEAAITP----KTRAIVPVH---YAGVACE----M  135 (375)
T ss_pred             HHHHHHc-------------CCEEEEEecC-CCcCCcC----HHHHHHhcCC----CCeEEEEeC---CCCCccC----H
Confidence            5443322             2222222211 1112223    5678877752    566666432   3565544    8


Q ss_pred             HHHHHHHHHhCCEEEEcccccCccc--cCCCcccccccCCCcceeeec----cccccCccccccccCHHHHHhhcCCC-c
Q 011669          278 PAVYKSIKKAGGLCIADEVQAGFAR--TGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTTPEIAEVLTRRN-Y  350 (480)
Q Consensus       278 ~~l~~l~~~~gillI~DEv~tgfgr--~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~~~~~~~l~~~~-~  350 (480)
                      ++|.++|++||+++|.|++|+ +|.  .| .     ..+..-|+.+||    |.++.|.+.++++.++++.+.+.... +
T Consensus       136 ~~i~~la~~~~i~vIeD~a~a-~g~~~~~-~-----~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~  208 (375)
T PRK11706        136 DTIMALAKKHNLFVVEDAAQG-VMSTYKG-R-----ALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREK  208 (375)
T ss_pred             HHHHHHHHHcCCEEEEECccc-cccccCC-e-----eeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHc
Confidence            999999999999999999997 432  12 1     112234778888    99987776667777788776443211 0


Q ss_pred             --------------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee--eEe---
Q 011669          351 --------------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG--DVR---  405 (480)
Q Consensus       351 --------------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~v~---  405 (480)
                                          +.++-.+.+..+.+++.|+.+  +...++.+++.+++++.|..+.. .+.+.  ...   
T Consensus       209 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~~~~-~~~~~~~~~~~~~  285 (375)
T PRK11706        209 GTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAPLAE-AGRIELPSIPDDC  285 (375)
T ss_pred             CCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCc-CCeeecCCCCCCC
Confidence                                112222345555566666543  33445555555666666654421 01111  011   


Q ss_pred             -ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-----------------cC-------CCEEEEeCCC-
Q 011669          406 -GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-----------------FY-------GNVFRITPPL-  459 (480)
Q Consensus       406 -g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------~~-------~~~iRi~p~~-  459 (480)
                       ....++++.+...        .....+.+.|.++||.+...-                 ..       .+.  ++.|+ 
T Consensus       286 ~~~~~~~~~~~~~~--------~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~--l~lP~~  355 (375)
T PRK11706        286 KHNAHMFYIKLRDL--------EDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERL--LRLPLF  355 (375)
T ss_pred             ceeeEEEEEEECCc--------CCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCc--EeccCC
Confidence             1122334444211        125678899999999864210                 00       122  34443 


Q ss_pred             -CCCHHHHHHHHHHHHHHH
Q 011669          460 -CFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       460 -~~t~~~id~~l~~l~~~l  477 (480)
                       ..|++|++..++.|++++
T Consensus       356 ~~l~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        356 YNLTDVEQRTVIDTILEFF  374 (375)
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence             368999999999999865

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.61  E-value=3.6e-13  Score=148.49  Aligned_cols=348  Identities=14%  Similarity=0.104  Sum_probs=203.7

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHH-HHHHHHhc---cccc---cccCChHHHHHHHHHHHhCCCCCC--EEEEeCCHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDS-IVNQIKRI---QHST---VLYLNHAIADFAEALASKMPGNLK--VVFFTNSGTE  169 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A-~~~~~~~~---~~~~---~~~~~~~~~~l~e~L~~~~~~~~~--~v~f~~sGse  169 (480)
                      ..|||..+..      ..+|.++++ +.+.+...   .|..   .......+.+.+++++++++.+.+  .|+||+++|+
T Consensus        35 ~iYLD~Aatt------~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~  108 (805)
T PLN02724         35 VVYLDHAGAT------LYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATA  108 (805)
T ss_pred             CEeEeCCCCC------CCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHH
Confidence            5899976543      223444444 44444432   1211   111234577899999999986544  5899999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCC--CCCC--ChHHHHHHHHH
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG--VFGA--DGEMYAKDVQD  245 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~--~~~~--d~~~~~~~le~  245 (480)
                      |+..+..... ..+++.||+ ....|............         .|+.....+.....  +.+.  +.+...+++++
T Consensus       109 alnlva~~l~-~~~gd~Iv~-t~~eH~svl~~~~~a~~---------~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~  177 (805)
T PLN02724        109 ALKLVGETFP-WSSESHFCY-TLENHNSVLGIREYALE---------KGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQR  177 (805)
T ss_pred             HHHHHHHHCC-CCCCCeEEE-eeccccchHHHHHHHHH---------cCCeEEeccchhccccccccccccccchhhhhh
Confidence            9998876542 234566666 45555544433221110         12222221111000  0000  00000134444


Q ss_pred             HHH----c--cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh--------CCEEEEcccccCccccCCCccccc
Q 011669          246 LID----F--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA--------GGLCIADEVQAGFARTGSHFWGFE  311 (480)
Q Consensus       246 ~i~----~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--------gillI~DEv~tgfgr~G~~~~~~~  311 (480)
                      .++    .  ...++++.|.+..+.+.+|.+.|    ++.+..+++..        ++++++|-+|+ +|..     .++
T Consensus       178 ~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~-----piD  247 (805)
T PLN02724        178 RNTSKLQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS-----PPD  247 (805)
T ss_pred             hhhhhhccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC-----CCC
Confidence            421    1  01235679999999999999988    77665555432        36899999996 4322     234


Q ss_pred             ccCCCcceeeec--cccccCccccccccCHHHHHhhcCCCccc-c---------C--------------CCcHHHHHHHH
Q 011669          312 AHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNYFN-T---------F--------------GGNPVCTAAGH  365 (480)
Q Consensus       312 ~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~~~~~-t---------~--------------~~~~~~~aaa~  365 (480)
                      ...+.+|++++|  |.+|+...+|++++++++.+.+.+...++ +         +              ..|..+.++..
T Consensus       248 v~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~  327 (805)
T PLN02724        248 LSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALR  327 (805)
T ss_pred             hhhcCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHH
Confidence            445578999888  98875566899999998877666432211 1         1              23456666666


Q ss_pred             HHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhc--CceeeE---------eccceeEEEEEecCCCcCCCCHHHHHH
Q 011669          366 AVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKY--GIIGDV---------RGRGFLLGVEFVTDRQLKTPAKAETLY  431 (480)
Q Consensus       366 a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~--~~~~~v---------~g~g~~~~i~~~~~~~~~~~~~~~~~~  431 (480)
                      ++|+.+.+   +.+.++.+++.+++.+.|.++....  +.+.-.         ..++..+.|.+......    ......
T Consensus       328 aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~----~v~~~~  403 (805)
T PLN02724        328 HGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGS----WVGHRE  403 (805)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCC----EeCHHH
Confidence            77777655   5677888888999999888773111  111111         12455555555432111    011233


Q ss_pred             HHHHHHHcCceeeccCc-------------------------------------CCCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          432 IMDKMKEMGVLVGKGGF-------------------------------------YGNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       432 ~~~~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      +...+.++||.++.|..                                     ..+.+|+++.+..|.+|||++++.|+
T Consensus       404 v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~  483 (805)
T PLN02724        404 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFII  483 (805)
T ss_pred             HHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHH
Confidence            44445567888876521                                     02679999999999999999999999


Q ss_pred             HHH
Q 011669          475 YSL  477 (480)
Q Consensus       475 ~~l  477 (480)
                      +.+
T Consensus       484 ~~~  486 (805)
T PLN02724        484 SSF  486 (805)
T ss_pred             HHh
Confidence            865

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.61  E-value=1.9e-13  Score=139.96  Aligned_cols=165  Identities=22%  Similarity=0.271  Sum_probs=116.1

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..++.++...+|+++|+++.+.  +..++++||++|+..+++.+..  ++++||+..+.|++... .+...        .
T Consensus        52 y~r~~~pt~~~Le~~lA~l~g~--~~~l~~ssG~~Ai~~al~al~~--~Gd~Vl~~~~~Y~~t~~-~~~~~--------l  118 (425)
T PRK06084         52 YTRIMNPTNDVLEQRVAALEGG--VGALAVASGMAAITYAIQTIAE--AGDNIVSVAKLYGGTYN-LLAHT--------L  118 (425)
T ss_pred             ccCCCCchHHHHHHHHHHHhCC--CceeEehhHHHHHHHHHHHHhC--CCCEEEEeCCCcchHHH-HHHHh--------c
Confidence            4456778889999999999863  4567899999999999986644  56789999999986332 22110        0


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      +..|+....++.       .|    .++++++++    +++++|++|++++++|.+.+    +++|.++|++||+++|+|
T Consensus       119 ~~~gi~v~~~d~-------~d----~e~le~ai~----~~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD  179 (425)
T PRK06084        119 PRIGIETRFAAH-------DD----IAALEALID----ERTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVD  179 (425)
T ss_pred             ccceeEEEEECC-------CC----HHHHHHHhc----cCCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEE
Confidence            111332222111       12    567888775    26789999999999998876    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-CccccccccC
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVTT  338 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pig~v~~~  338 (480)
                      |+|. .+...      .......|++  +++|.++| |.++|.+++.
T Consensus       180 ~a~a-~~~~~------~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~  219 (425)
T PRK06084        180 NTVA-TPVLC------RPFEHGADIVVHSLTKYIGGHGTSIGGIVVD  219 (425)
T ss_pred             CCCc-ccccC------ChhhcCCCEEEECchhcccccccceeEEEEe
Confidence            9996 22211      1122346666  67899996 6788876653

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.61  E-value=2.2e-13  Score=137.58  Aligned_cols=236  Identities=12%  Similarity=0.068  Sum_probs=147.4

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      ....++...+|+++|+++.++  +.+++++||++|+..++....  .++++||+.++.|.+........         ..
T Consensus        56 ~r~~npt~~~Le~~iA~le~~--~~~~~~~sG~~Ai~~~l~all--~~GD~Vvv~~~~Y~~t~~l~~~~---------l~  122 (394)
T PRK09028         56 GRRGTPTHFAFQAAIVELEGG--AGTALYPSGAAAISNALLSFL--KAGDHLLMVDSCYEPTRDLCDKI---------LK  122 (394)
T ss_pred             cCCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEECCCcHHHHHHHHHh---------hh
Confidence            444567788999999998753  458899999999999987553  36789999999986654321110         01


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      ..|+....++.       .+    .+.++++++    +++++|++|.+.|++|.+.+    +++|.++|++||+++|+||
T Consensus       123 ~~Gi~v~~v~~-------~~----~e~l~~~l~----~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~  183 (394)
T PRK09028        123 GFGIETTYYDP-------MI----GEGIRELIR----PNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDN  183 (394)
T ss_pred             hcceEEEEECC-------CC----HHHHHHhcC----cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEEC
Confidence            12333322211       12    255776664    36889999999999887766    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHh
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i  371 (480)
                      +|..    + -  .+.-.....|++  +..|.++| | .-.|+++.++++.+.+...........+|..+...+..|+.+
T Consensus       184 t~a~----p-~--~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL  256 (394)
T PRK09028        184 TWAS----P-I--NSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTL  256 (394)
T ss_pred             Cccc----c-c--cCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH
Confidence            9962    2 0  122223345766  56799985 3 777888777777665543211112234566655555444332


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEe
Q 011669          372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (480)
Q Consensus       372 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~  416 (480)
                      .  -..++..+....+.+.|++    +|.+..                  ..|.|.|+.|++.
T Consensus       257 ~--lR~~~~~~na~~la~~L~~----~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~  313 (394)
T PRK09028        257 G--VRLAQHEKNALKVANWLAT----RPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLK  313 (394)
T ss_pred             H--HHHHHHHHHHHHHHHHHhc----CCCccEEECCCCCCCccHHHHHHhccCCCceEEEEEC
Confidence            1  1233334444444444443    333221                  2466888888884

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.60  E-value=5.3e-13  Score=136.06  Aligned_cols=217  Identities=14%  Similarity=0.130  Sum_probs=135.2

Q ss_pred             HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC-CCcc
Q 011669          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG-VVPD  318 (480)
Q Consensus       240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~-~~pD  318 (480)
                      .+++++++..    .+..|++-...+.++ ..+    +++|+++|++||+++++|++|+ +|-.|......+... ...|
T Consensus       209 ~d~l~~~~~~----~~plvii~g~S~~~~-~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D  278 (493)
T PRK13580        209 YDEIAALARE----FKPLILVAGYSAYPR-RVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHAD  278 (493)
T ss_pred             HHHHHHHHhh----cCCEEEEeCccccCC-CcC----HHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCc
Confidence            6778888863    334444445544444 445    9999999999999999999996 554431111100001 1457


Q ss_pred             ee--eeccccccCccccccccCHHHHHhhcCCCccccCCCc-HHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHH
Q 011669          319 IV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGN-PVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       319 iv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~-~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~  392 (480)
                      ++  |++|++.|.. .|++++++++.+.+.... ...++++ +...+++..++..+.++   .+.+++.++.++|++.|.
T Consensus       279 ~vtgT~hKaL~GP~-GG~I~~~~~l~~~L~~a~-P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~  356 (493)
T PRK13580        279 IVTTTTHKTLRGPR-GGLVLAKKEYADAVDKGC-PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFL  356 (493)
T ss_pred             EEEeCChhhccCCC-eEEEEecHHHHHHHhhCC-CcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence            66  5679995432 478889999888885332 2333332 22444444445544422   367888889999998887


Q ss_pred             HhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc----Cc----CCCEEEEeCCC----C
Q 011669          393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG----GF----YGNVFRITPPL----C  460 (480)
Q Consensus       393 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~----~~~~iRi~p~~----~  460 (480)
                      +.  .+..+.. .....++.+.+.+.       ......+.+.|.+.||++.+.    .+    ....|||+++.    .
T Consensus       357 ~~--G~~vv~g-gTdshIV~V~lg~~-------~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg  426 (493)
T PRK13580        357 KR--GARLVTG-GTDNHLVLIDVTSF-------GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLG  426 (493)
T ss_pred             hc--CCCccCC-CCCCCEEEEEeCCH-------HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcC
Confidence            75  3332210 12234556665221       112345677899999998642    11    14579999887    4


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 011669          461 FTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       461 ~t~~~id~~l~~l~~~l~  478 (480)
                      ++++|++++++.|.++++
T Consensus       427 ~teedi~~iad~l~~~l~  444 (493)
T PRK13580        427 MGSDEMDEVAELIVKVLS  444 (493)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            569999999999998875

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.60  E-value=7.2e-14  Score=140.54  Aligned_cols=313  Identities=11%  Similarity=0.056  Sum_probs=187.5

Q ss_pred             CCHHHHHHHHHHHHh---ccccccccCChHHHHHHHHHHHhCCCC-CCEEEEe-CCHHHHHHHHHHHHHhhcCCceEEEE
Q 011669          116 CHPYVVDSIVNQIKR---IQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFT-NSGTEANELAIMMARLYTGCNDIISL  190 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~---~~~~~~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~-~sGseA~~~Alk~ar~~~~~~~ii~~  190 (480)
                      -+|+|++|+.++...   ..|....+ .....+.++.|+++++.. ..+|+|+ +|||.+++.++.....  +  +.+..
T Consensus        14 ~~~~v~~a~~~~~~~~~~~~hr~~~f-~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~--~--~~l~i   88 (361)
T TIGR01366        14 VRLEQLQALTTTAASLFGTSHRQAPV-KNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIE--K--KSLHL   88 (361)
T ss_pred             CCHHHHHHHHhcCccccccCcCChHH-HHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhccc--c--cccEE
Confidence            378999998765211   13433322 467788899999999753 2367775 7799999999975431  2  33333


Q ss_pred             cCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcce
Q 011669          191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (480)
Q Consensus       191 ~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  270 (480)
                      ..+.||....-.+....  +.     ..+..++.+      |+.       .++..+    ..+++.|.+....+.+|.+
T Consensus        89 ~~G~~~~~~~~~a~~~~--~~-----~~~~~~~~~------~~~-------~~~~~~----~~~~~lV~~~h~et~tG~~  144 (361)
T TIGR01366        89 SFGEFSSKFAKAVKLAP--WL-----GEPIIVTAD------PGS-------APEPQA----DPGVDVIAWAHNETSTGVA  144 (361)
T ss_pred             ecCHHHHHHHHHHHhhh--cc-----CCceEEecC------CCC-------CCCCcc----CCCCCEEEEcccCCcccee
Confidence            34555644444433210  00     011222221      111       111111    2478899999999999998


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCC
Q 011669          271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRR  348 (480)
Q Consensus       271 ~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~  348 (480)
                      .|    +++|   ++++|+++|+|-+|+ +|.   ....++  .  .|++++|  |++++--.++.++.++++++.+...
T Consensus       145 ~p----i~~I---~~~~g~~~iVDavqs-~g~---~~idv~--~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~  209 (361)
T TIGR01366       145 VP----VRRP---EGSDDALVVIDATSG-AGG---LPVDIA--E--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAI  209 (361)
T ss_pred             cc----cccc---cccCCCeEEEEcCcc-ccC---CCCCHH--H--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcc
Confidence            87    5555   689999999999998 542   121222  2  6888776  9888421255667788877665421


Q ss_pred             Cc--------------------cccCCCcHHH-HHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCceee
Q 011669          349 NY--------------------FNTFGGNPVC-TAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (480)
Q Consensus       349 ~~--------------------~~t~~~~~~~-~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  403 (480)
                      ..                    ..|.+.+++. ..+..++|+.+.++    ...++.+++.+++++.+.++.........
T Consensus       210 ~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~  289 (361)
T TIGR01366       210 AASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTD  289 (361)
T ss_pred             cCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence            10                    1334444444 33556777777654    34466667777777777766311011111


Q ss_pred             Eec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC--cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          404 VRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG--FYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       404 v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ... ......+.+. +       ......+.+.|.++||.+.++.  ...+.+|++....+|++||++++++|+++++++
T Consensus       290 ~~~~s~~v~~v~~~-~-------g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~  361 (361)
T TIGR01366       290 PGKRSQVVGTIDFV-D-------DIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL  361 (361)
T ss_pred             hhhcccceEEEECC-C-------ccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence            100 1111234442 1       1124668888889999987642  124579999999999999999999999998764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.59  E-value=6.4e-13  Score=146.13  Aligned_cols=303  Identities=14%  Similarity=0.184  Sum_probs=195.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCCEEEEeCCHH----HHHHHHHHHHHhhcCC--ceEEEEcCCcccccccccccccCCCcccc
Q 011669          140 NHAIADFAEALASKMPGNLKVVFFTNSGT----EANELAIMMARLYTGC--NDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~~~v~f~~sGs----eA~~~Alk~ar~~~~~--~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ...+.+++++|+++++  .+.|.|+.+++    +|+..+++......|.  .++|+....-||.........        
T Consensus       567 ~~~~~~~r~~la~i~g--~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~--------  636 (993)
T PLN02414        567 QEMFEDLGDLLCEITG--FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMC--------  636 (993)
T ss_pred             HHHHHHHHHHHHHHhC--CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHC--------
Confidence            3556789999999995  48899998888    8888888876543221  236666678888777555442        


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                          |+..+.+|....+.  .|    +++|+++++.+ .+++++|++...++.+|...+    +++|.++|+++|+++++
T Consensus       637 ----G~~vv~v~~d~~G~--vD----le~L~~~i~~~-~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~v  701 (993)
T PLN02414        637 ----GMKIVVVGTDAKGN--IN----IEELRKAAEAH-KDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYM  701 (993)
T ss_pred             ----CCEEEEeccCCCCC--cC----HHHHHHHHhcc-CCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEE
Confidence                33333333211111  13    68888888743 247899999988888998877    99999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCcceeeec--cccc-----cCccccccccCHHHHHhhcCCC-----------c---cc
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG-----NGIPLGAVVTTPEIAEVLTRRN-----------Y---FN  352 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g-----~G~pig~v~~~~~~~~~l~~~~-----------~---~~  352 (480)
                      |-+|. .+..+  .  ........|+++++  |+|+     ||-.+|.+.++++++..+-...           .   .+
T Consensus       702 DgAq~-~a~~~--l--~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iG  776 (993)
T PLN02414        702 DGANM-NAQVG--L--TSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLG  776 (993)
T ss_pred             EecCH-HhccC--c--CCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcC
Confidence            99985 22212  1  11123457888774  8776     3466899999998876654321           0   12


Q ss_pred             cCC----CcHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHhHHhcCceeeEeccce---eEEEEEecCCCcC
Q 011669          353 TFG----GNPVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF---LLGVEFVTDRQLK  422 (480)
Q Consensus       353 t~~----~~~~~~aaa~a~L~~i~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~---~~~i~~~~~~~~~  422 (480)
                      |..    ++.+...+++.-++.+-.+.+   .++...+..|++++|.+.   ++... ....|.   -+.+.+..-+  +
T Consensus       777 t~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~---~~~~~-~~~~~~~~hEfv~~~~~l~--~  850 (993)
T PLN02414        777 TISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH---YPVLF-RGKNGTCAHEFIIDLRPFK--N  850 (993)
T ss_pred             CccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh---CCccc-cCCCCCeeeeEEEeccccc--c
Confidence            222    333444555555665555655   566677788888888662   33221 111122   1122221100  0


Q ss_pred             CCCHHHHHHHHHHHHHcCceeeccC-cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          423 TPAKAETLYIMDKMKEMGVLVGKGG-FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       423 ~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       .....+..+.+.|.+.|+....-. +..+.+||+|.-..|++|+|+++++|..+..+
T Consensus       851 -~~g~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e  907 (993)
T PLN02414        851 -TAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREE  907 (993)
T ss_pred             -ccCCCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence             001124678899999999875422 12578999999999999999999999876543

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.59  E-value=1.9e-12  Score=131.50  Aligned_cols=313  Identities=17%  Similarity=0.128  Sum_probs=182.0

Q ss_pred             HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccc
Q 011669          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (480)
Q Consensus       118 p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~  197 (480)
                      ++-.+++.+.+.....    +..+...+++++++++++.  +..++++||++|+..+++... ..+++.||+..++|++.
T Consensus        10 ~~~~~~v~~~~~~~~~----~~g~~~~~le~~la~~~g~--~~~v~~~sgt~al~~~l~al~-~~~Gd~Viv~~~~~~~~   82 (380)
T TIGR03588        10 QDDIDAVVEVLKSDFL----TQGPTVPAFEEALAEYVGA--KYAVAFNSATSALHIACLALG-VGPGDRVWTTPITFVAT   82 (380)
T ss_pred             HHHHHHHHHHHhcCCc----cCChhHHHHHHHHHHHHCC--CeEEEEcCHHHHHHHHHHHcC-CCCCCEEEeCCcchHHH
Confidence            4557777777765322    2346678899999999864  456778899999999998652 23578899999888765


Q ss_pred             cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChH
Q 011669          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  277 (480)
                      .......             |...+.++... ..+..|    .+++++.++....+++++|++..   ..|...+    +
T Consensus        83 ~~~~~~~-------------G~~~~~~~~~~-~~~~~d----~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~----~  137 (380)
T TIGR03588        83 ANCALYC-------------GAKVDFVDIDP-DTGNID----EDALEKKLAAAKGKLPKAIVPVD---FAGKSVD----M  137 (380)
T ss_pred             HHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHHhhcccCCCceEEEEeC---CCCccCC----H
Confidence            4322211             22222222110 112223    57788887632113566776432   2455544    8


Q ss_pred             HHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC--Ccceeeec----cccccCccccccccC-HHHHHhhcCCCc
Q 011669          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV--VPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRRNY  350 (480)
Q Consensus       278 ~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~--~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~~~  350 (480)
                      ++|.++|++||+++|+|++|+ +|-.    +.....|.  .-|++++|    |.++.| .-|+++.. +++.+.+.....
T Consensus       138 ~~i~~l~~~~~~~lI~D~a~a-~g~~----~~~~~~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~  211 (380)
T TIGR03588       138 QAIAALAKKHGLKIIEDASHA-LGAE----YGGKPVGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRS  211 (380)
T ss_pred             HHHHHHHHHcCCEEEEECCCc-ccCc----cCCEeCCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHH
Confidence            999999999999999999997 4311    11112233  34777766    888754 34556554 666655432100


Q ss_pred             -------------------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          351 -------------------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       351 -------------------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                                               +..+..+.+..+.+++.|+.+  +...++.+++.+++.+.|..+. .........
T Consensus       212 ~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~~-~~~~~~~~~  288 (380)
T TIGR03588       212 HGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDLP-YFTPLTIPL  288 (380)
T ss_pred             CCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCC
Confidence                                     011222456556666666643  4556666777777777776652 111011101


Q ss_pred             cc--c-eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC----------------cC-------CCEEEEeCCC
Q 011669          406 GR--G-FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG----------------FY-------GNVFRITPPL  459 (480)
Q Consensus       406 g~--g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------~~-------~~~iRi~p~~  459 (480)
                      +.  . .+..+.+... .     ....+.+.+.|.++||.+...-                ..       .+.+++-...
T Consensus       289 ~~~~~~~~~~i~~~~~-~-----~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~  362 (380)
T TIGR03588       289 GSKSAWHLYPILLDQE-F-----GCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHP  362 (380)
T ss_pred             CCEeEEEEEEEEECCc-C-----CCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCC
Confidence            11  1 1222223211 0     1124678888999999875321                00       1456665556


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 011669          460 CFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       460 ~~t~~~id~~l~~l~~~l  477 (480)
                      ..|++|++.+++.|++++
T Consensus       363 ~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       363 ALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             CCCHHHHHHHHHHHHHhC
Confidence            679999999999998864

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.58  E-value=9.8e-13  Score=135.27  Aligned_cols=309  Identities=17%  Similarity=0.154  Sum_probs=178.9

Q ss_pred             HHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH-------hhcCCceEEEEcCC
Q 011669          121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR-------LYTGCNDIISLRNA  193 (480)
Q Consensus       121 ~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar-------~~~~~~~ii~~~~~  193 (480)
                      .+++.+.+...+..    ..+...+|+++|+++++.  +.+++++|||+|+..|++.+.       ...+++.||+..++
T Consensus        47 ~~a~~~~~~~~~~~----~G~~~~~fe~~lA~~~g~--~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t  120 (438)
T PRK15407         47 LQNLVDASLDFWLT----TGRFNDAFEKKLAEFLGV--RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAG  120 (438)
T ss_pred             HHHHHHHHHhCccc----CChhHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCC
Confidence            44455555543222    235578899999999954  579999999999999998663       23467889999999


Q ss_pred             cccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       194 yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      |.+........             |...+.++.. ...|+.|    .+++++.++    .++++|++.+..|.   .   
T Consensus       121 ~~a~~~~v~~~-------------G~~pv~vdvd-~~~~~id----~~~le~~i~----~~tkaVi~~~~~G~---p---  172 (438)
T PRK15407        121 FPTTVNPIIQN-------------GLVPVFVDVE-LPTYNID----ASLLEAAVS----PKTKAIMIAHTLGN---P---  172 (438)
T ss_pred             cHHHHHHHHHc-------------CCEEEEEecC-CCcCCcC----HHHHHHHcC----cCCeEEEEeCCCCC---h---
Confidence            97655443322             2222222111 0123333    567777764    36788888876442   2   


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec----cccccCccccccccCH-HHHHhhcCC
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTTP-EIAEVLTRR  348 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~~-~~~~~l~~~  348 (480)
                       ..+++|.++|++||+++|+|++|+ +|-.   +-+ ...|-.-|+.+||    |.+..|- -|++++++ ++.+.+...
T Consensus       173 -~dl~~I~~la~~~gi~vIeDaa~a-~G~~---~~g-~~~G~~gd~~~fSf~~~k~~~~ge-GG~l~t~d~~l~~~~~~~  245 (438)
T PRK15407        173 -FDLAAVKAFCDKHNLWLIEDNCDA-LGST---YDG-RMTGTFGDIATLSFYPAHHITMGE-GGAVFTNDPLLKKIIESF  245 (438)
T ss_pred             -hhHHHHHHHHHHCCCEEEEECccc-hhhh---cCC-eeeeccCceEEEeCCCCCCccccC-ceEEEECCHHHHHHHHHH
Confidence             238999999999999999999997 4421   111 1123334777665    7776543 37777764 444332210


Q ss_pred             ----C-----------------------------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011669          349 ----N-----------------------------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE  389 (480)
Q Consensus       349 ----~-----------------------------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~  389 (480)
                          .                                   .+..+..+.+.++.++..|+.+  ++..++-+++.+++.+
T Consensus       246 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l--~~~~~~R~~~a~~y~~  323 (438)
T PRK15407        246 RDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKL--PGFIEARKANFAYLKE  323 (438)
T ss_pred             HHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence                0                                   1122334577778888888765  3455666666677777


Q ss_pred             HHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC--c------------------
Q 011669          390 RLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG--F------------------  448 (480)
Q Consensus       390 ~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~------------------  448 (480)
                      .|..+...........+. ..++.+.+.-+...    ....+.+.+.|.++||-.....  .                  
T Consensus       324 ~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~  399 (438)
T PRK15407        324 GLASLEDFLILPEATPNSDPSWFGFPITVKEDA----GFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGEL  399 (438)
T ss_pred             HhccCCCccccCcCCCCCeeEEEEEEEEECCcC----CCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCC
Confidence            765532101011111111 12222222111110    1124678899999999654210  0                  


Q ss_pred             ------CCCEEEEeCC--CCCCHHHHHHHHHHHHHHHh
Q 011669          449 ------YGNVFRITPP--LCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       449 ------~~~~iRi~p~--~~~t~~~id~~l~~l~~~l~  478 (480)
                            ....  |+.|  ...|++|++..+++|+++++
T Consensus       400 P~ae~~~~~~--l~LP~~~~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        400 TNTDRIMNDT--FWIGVYPGLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             hHHHHHHhCe--EEecCCCCCCHHHHHHHHHHHHHHHh
Confidence                  0112  3333  33589999999999998874

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.58  E-value=1.7e-12  Score=134.43  Aligned_cols=325  Identities=13%  Similarity=0.049  Sum_probs=180.5

Q ss_pred             CCCHHHHHHHHHHH-Hhccccc--cccC--C---hHHHHHHHH-HHHhCCCCCCEEEE---eCCHHHHHHHHHHHHHhhc
Q 011669          115 HCHPYVVDSIVNQI-KRIQHST--VLYL--N---HAIADFAEA-LASKMPGNLKVVFF---TNSGTEANELAIMMARLYT  182 (480)
Q Consensus       115 h~~p~v~~A~~~~~-~~~~~~~--~~~~--~---~~~~~l~e~-L~~~~~~~~~~v~f---~~sGseA~~~Alk~ar~~~  182 (480)
                      +..|.|.+|+...+ .++....  ..|.  +   +.+++++.+ ..+.+....+.+.|   .+||+.||..++.....  
T Consensus        45 ~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~--  122 (475)
T PLN03226         45 FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQ--  122 (475)
T ss_pred             cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCC--
Confidence            45699999999888 4543211  1221  2   233333333 44556544343323   48999999999986643  


Q ss_pred             CCceEEEEcC---Cc--ccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669          183 GCNDIISLRN---AY--HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (480)
Q Consensus       183 ~~~~ii~~~~---~y--hG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~  257 (480)
                      +++.|+..+-   ++  |++......++....+        +..+++..  ..   ++.....++|++++...   +++.
T Consensus       123 pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~--------~~~~~y~~--~~---~~g~iD~d~Le~~l~~~---~pkl  186 (475)
T PLN03226        123 PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIY--------FESMPYRL--DE---STGLIDYDKLEKKAMLF---RPKL  186 (475)
T ss_pred             CCCEEEECCCCcCcchhhhhhhcccccccceEE--------EEeeeeee--cC---CCCCcCHHHHHHHHhhc---CCeE
Confidence            6778887442   11  3322211111111100        00111110  00   01111167888888642   3445


Q ss_pred             EEE-cccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccc
Q 011669          258 FLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGA  334 (480)
Q Consensus       258 vi~-epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~  334 (480)
                      |++ +.+.   |...+    +++|+++|++||+++++|++|. +|..+..... ...+ ..|++  |++|++.|... |+
T Consensus       187 Iv~~~S~~---s~~~D----~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~-~p~~-~~Div~~t~hK~L~GP~G-g~  255 (475)
T PLN03226        187 IIAGASAY---PRDWD----YARMRKIADKVGALLMCDMAHI-SGLVAAQEAA-SPFE-YCDVVTTTTHKSLRGPRG-GM  255 (475)
T ss_pred             EEEecCcC---CCccC----HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCC-CCCC-CCeEEEecCcccccCCCc-eE
Confidence            555 4443   33333    8899999999999999999996 5544311111 1111 36766  56699965322 66


Q ss_pred             cccCHHHH-----------H---hhcCCC-ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHH
Q 011669          335 VVTTPEIA-----------E---VLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKD  396 (480)
Q Consensus       335 v~~~~~~~-----------~---~l~~~~-~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~  396 (480)
                      +++++++.           +   .+.... ...+-+.++...++..++|+.+.++   .+.+++.++.+++++.|.+.  
T Consensus       256 I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~--  333 (475)
T PLN03226        256 IFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK--  333 (475)
T ss_pred             EEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC--
Confidence            77777543           2   222211 1122234466666677778887643   46788888888888888764  


Q ss_pred             hcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------cCCCEEEEeC----CCCCCHHH
Q 011669          397 KYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------FYGNVFRITP----PLCFTKED  465 (480)
Q Consensus       397 ~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p----~~~~t~~~  465 (480)
                      .+.++..- ....+..+++....       ....++.+.|.+.||++..+.       .....+|+..    ...++++|
T Consensus       334 G~~l~~~~-t~~hi~lv~~~~~g-------i~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d  405 (475)
T PLN03226        334 GYKLVTGG-TDNHLVLWDLRPLG-------LTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKD  405 (475)
T ss_pred             CCEEEcCC-CCCCEEEEEccCCC-------CCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHH
Confidence            33322210 11345556653221       123457777888999986542       1134588833    34578899


Q ss_pred             HHHHHHHHHHHHh
Q 011669          466 ADYLVDVMDYSLS  478 (480)
Q Consensus       466 id~~l~~l~~~l~  478 (480)
                      ++++.+.|.++++
T Consensus       406 ~~~ia~~i~~~~~  418 (475)
T PLN03226        406 FEKVAEFLHRAVT  418 (475)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998875

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.7e-13  Score=131.15  Aligned_cols=353  Identities=16%  Similarity=0.122  Sum_probs=213.6

Q ss_pred             EEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-----ccCChHHHHHHHHHHHhCCCCCC
Q 011669           85 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        85 ~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-----~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      ++...+.++ ..||+.++.|.+.......  .++++.+.+...+.+++.++-     .+.-+...++.+.|+++++.  +
T Consensus        81 ~e~~~~~~~-~i~G~~~~N~aS~NfL~l~--~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~--E  155 (467)
T KOG1358|consen   81 LESVMLPHV-TIDGKDVLNFASANFLGLI--ENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGT--E  155 (467)
T ss_pred             cccccCCce-EecCceeecccchhhhhhc--ccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCC--c
Confidence            444444443 5899999999876554433  368999999999998754321     33456778999999999964  4


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHH
Q 011669          160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY  239 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~  239 (480)
                      ..++-+-|-.+++.++..   ++.+.+|+..+-.-+-...-.+.++......+.+                   +|    
T Consensus       156 ~aivYs~gF~ti~S~ipa---fsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkh-------------------nd----  209 (467)
T KOG1358|consen  156 DAIVYSYGFSTIESAIPA---FSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKH-------------------ND----  209 (467)
T ss_pred             ceeeeccccchhhhcchh---hhccCcEEEEehhhhHHHHHHHhhhhheeEEecC-------------------CC----
Confidence            444556677778877774   4456777776555443333333333322111111                   23    


Q ss_pred             HHHHHHHHHcc------CCC---ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC-ccc
Q 011669          240 AKDVQDLIDFG------TSG---HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-FWG  309 (480)
Q Consensus       240 ~~~le~~i~~~------~~~---~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~-~~~  309 (480)
                      .+++|.++...      .++   ....+++|.+.-+.|.+.|    +++|.++..||..-+|.||.++ ||-.|.. ..-
T Consensus       210 m~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~GrGv  284 (467)
T KOG1358|consen  210 MEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTGRGV  284 (467)
T ss_pred             HHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccCccc
Confidence            34554444211      111   2568899999999999988    9999999999999999999987 6544321 122


Q ss_pred             ccccCCC---cceeee--ccccc-cCccccccccCHHHHH--hhcCCCccccCCCcHHHHHHHHHHHHHhhhh-HHHHHH
Q 011669          310 FEAHGVV---PDIVTM--AKGIG-NGIPLGAVVTTPEIAE--VLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD-KLQNNA  380 (480)
Q Consensus       310 ~~~~~~~---pDivt~--sK~~g-~G~pig~v~~~~~~~~--~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~-~~~~~~  380 (480)
                      .+++++.   .|+++.  +-+++ +|   |+++++.-+++  ++....+..+-+.+|....||..++.+++++ +..+.+
T Consensus       285 teH~~v~~~~iDiv~~sm~~alas~G---gFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L  361 (467)
T KOG1358|consen  285 TEHFGVPITDIDIVTASMETALASGG---GFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPL  361 (467)
T ss_pred             cccCCCCccceeeeeecccccccccC---ceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhh
Confidence            4677764   467654  45565 23   44555444332  2222222233345677778888888876653 445555


Q ss_pred             HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--------CCCE
Q 011669          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--------YGNV  452 (480)
Q Consensus       381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~~~~  452 (480)
                      +.....+...|...   -.....-.....++.+.+.....+.+.+-...+.+++.+..+|+++.....        ....
T Consensus       362 ~~k~~~~H~~l~~~---s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pS  438 (467)
T KOG1358|consen  362 RAKVAKFHAALSSN---SGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPS  438 (467)
T ss_pred             hccccccchhhhcC---CceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCc
Confidence            55555555555442   111111112233444455433222222223456788888777988865321        1246


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          453 FRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       453 iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +||+....++++|++.+.+.|++....
T Consensus       439 iri~~~a~~seeel~ra~~~ik~~~~~  465 (467)
T KOG1358|consen  439 IRICVSAGMSEEELERAAELIKEVASA  465 (467)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999987643

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.57  E-value=4.6e-13  Score=135.47  Aligned_cols=286  Identities=16%  Similarity=0.127  Sum_probs=171.0

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      ..+.++...+|+++|+++++.  +.+++++||+.|+..++.+   ..+++.||+.++.|.+.........         .
T Consensus        42 ~r~~~p~~~~le~~la~l~g~--~~~l~~~sG~~al~~~l~l---l~~Gd~Vl~~~~~y~~~~~~~~~~~---------~  107 (378)
T TIGR01329        42 TRSGNPTRTALESLLAKLDKA--DRAFAFSSGMAALDVITRL---LNNGDEIIAGDDLYGGTDRLLTQVV---------P  107 (378)
T ss_pred             CCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHH---hCCCCEEEEcCCCchHHHHHHHHHH---------H
Confidence            334567788999999999865  5677889999998877652   2467889988888754322111000         0


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      ..|+....++.       .|    .+++++.++    +++++|++|.+.|+.|.+.+    +++|.++|++||+++|+|+
T Consensus       108 ~~G~~v~~vd~-------~d----~~~le~~i~----~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~  168 (378)
T TIGR01329       108 RSGVVVVHVDT-------TD----LDKVKAALG----PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDN  168 (378)
T ss_pred             HcCcEEEEeCC-------CC----HHHHHHhcC----cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEEC
Confidence            11333333221       12    467777774    37889999999899998876    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCccee--eecccccc--CccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHH
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~--G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~  370 (480)
                      +|.. +... ..  .   +...|++  +.+|.++|  +...|+++++ +++.+.+...........+|..+..++..|+.
T Consensus       169 a~~~-~~~~-~~--l---~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~t  241 (378)
T TIGR01329       169 TMMS-PLLC-NP--L---ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKT  241 (378)
T ss_pred             CCcc-cccC-Ch--h---hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCC
Confidence            9842 1111 11  1   2235666  56799985  3668888774 55555554322212233456655443333332


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee------------------eEeccceeEEEEEecCCCcCCCCHHHHHHH
Q 011669          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIG------------------DVRGRGFLLGVEFVTDRQLKTPAKAETLYI  432 (480)
Q Consensus       371 i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~  432 (480)
                      +  ....++..++...+.+.|+    +++.+.                  ...+.|.++.|++ .+       .....++
T Consensus       242 l--~~R~e~~~~na~~la~~L~----~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~-~~-------~~~~~~~  307 (378)
T TIGR01329       242 L--AIRIEKQQENARAIAMFLS----THPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET-GS-------VALSKRL  307 (378)
T ss_pred             H--HHHHHHHHHHHHHHHHHHH----hCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEE-CC-------HHHHHHH
Confidence            2  1223333444444444444    333221                  1235677888887 21       1224567


Q ss_pred             HHHHHHcCceeeccCc-------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          433 MDKMKEMGVLVGKGGF-------------------------YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       433 ~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+.|...++.+..|+.                         ..+.|||+..+    |+.+.+++-|+++|++
T Consensus       308 ~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~  375 (378)
T TIGR01329       308 VEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI----EDVDDLISDLDIAFVT  375 (378)
T ss_pred             HHhCcCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence            7777655655544431                         13578988554    4566667777776654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.56  E-value=8.9e-13  Score=133.96  Aligned_cols=288  Identities=15%  Similarity=0.101  Sum_probs=169.7

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      .+..++...+|+++|+++.+.. + .+.++||+.|+..++. +.  .++++||+.++.|++.........         .
T Consensus        49 ~r~~~p~~~~le~~lA~l~g~~-~-~v~~~sG~~ai~~~l~-~l--~~Gd~Vlv~~~~y~~~~~~~~~~~---------~  114 (390)
T PRK08064         49 SRSGNPTREALEDIIAELEGGT-K-GFAFASGMAAISTAFL-LL--SKGDHVLISEDVYGGTYRMITEVL---------S  114 (390)
T ss_pred             cCCCChhHHHHHHHHHHHhCCC-C-eEEECCHHHHHHHHHH-Hh--CCCCEEEEccCccchHHHHHHHHH---------H
Confidence            4455788899999999998654 3 4567999999998885 22  367889999998875432211110         0


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      ..|+....++.       .|    .+++++.++    +++++|++|.++|++|.+.+    +++|.++|+++|+++|+||
T Consensus       115 ~~G~~v~~v~~-------~d----~~~l~~~l~----~~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~  175 (390)
T PRK08064        115 RFGIEHTFVDM-------TN----LEEVAQNIK----PNTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDN  175 (390)
T ss_pred             HcCCEEEEECC-------CC----HHHHHHhcC----CCceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEEC
Confidence            01333222221       12    466766664    36789999998888998876    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCccee--eecccccc--CccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHH
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~--G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~  370 (480)
                      +|..+. .. ..  . .+|  .|++  +++|.++|  |.-.|+++++ +++++.+...........+|..+...+..++.
T Consensus       176 a~~~~~-~~-~~--~-~~g--~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~t  248 (390)
T PRK08064        176 TFLTPL-LQ-KP--L-DLG--ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKT  248 (390)
T ss_pred             CCCccc-cc-Cc--h-hhC--CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc
Confidence            986431 11 11  1 123  4666  56799974  3445666654 67777766433222233444444443333322


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHH----hcCce----------eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHH
Q 011669          371 IQKDKLQNNAHVVGSYLKERLTALKD----KYGII----------GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM  436 (480)
Q Consensus       371 i~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~----------~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l  436 (480)
                      +  ....++..+....+.+.|++...    .||..          ....+.|.++.|++..        .   ..+.+.+
T Consensus       249 l--~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~--------~---~~~~~f~  315 (390)
T PRK08064        249 L--HVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS--------E---EAVRQFV  315 (390)
T ss_pred             H--HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC--------H---HHHHHHH
Confidence            1  12233334444444444443210    01111          1234678888888831        1   1223333


Q ss_pred             HHcCce---eecc-------------------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          437 KEMGVL---VGKG-------------------------GFYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       437 ~~~Gv~---v~~~-------------------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ...++.   +.-|                         |...+.+|++..+..+++.|+.+.++|+++
T Consensus       316 ~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~  383 (390)
T PRK08064        316 SHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV  383 (390)
T ss_pred             HhCCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence            334442   1111                         011368999999988888888888888764

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.55  E-value=1e-12  Score=132.60  Aligned_cols=198  Identities=13%  Similarity=0.030  Sum_probs=125.6

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      +++..++....|++.|++...+ .. .++++||++|+..++....  .++++||+.++.|.++........         
T Consensus        58 YsR~gnPt~~~Le~~la~le~~-~~-~v~~sSG~aAi~~~l~all--~~GD~Vlv~~~~Y~~~~~l~~~~l---------  124 (395)
T PRK05967         58 YGTRGTPTTDALCKAIDALEGS-AG-TILVPSGLAAVTVPFLGFL--SPGDHALIVDSVYYPTRHFCDTML---------  124 (395)
T ss_pred             cCCCCChHHHHHHHHHHHHhCC-CC-EEEECcHHHHHHHHHHHhc--CCCCEEEEccCCcHHHHHHHHHHH---------
Confidence            3456689999999999987643 23 4677789999999986553  377899999999987543221111         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+....++.       .+    .+.++++++    +++++|++|.+.|+.+.+.+    +++|.++|+++|+++|+|
T Consensus       125 ~~~Gi~v~~vd~-------~~----~e~l~~al~----~~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD  185 (395)
T PRK05967        125 KRLGVEVEYYDP-------EI----GAGIAKLMR----PNTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMD  185 (395)
T ss_pred             HhcCeEEEEeCC-------CC----HHHHHHhcC----cCceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEE
Confidence            011333222211       11    245777774    36889999987777776665    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCcceeeecccccc--CccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN--GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~--G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      ++|.....     .-...+|...-+.+.+|.++|  ..-.|+++.++++.+.+........-..+|..+...+..|+
T Consensus       186 ~t~a~p~~-----~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~  257 (395)
T PRK05967        186 NTWATPLY-----FRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLR  257 (395)
T ss_pred             CCccCcee-----cChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcc
Confidence            99964211     111123433333467899986  37778888888766655421111112245665554444333

>PRK05939 hypothetical protein; Provisional

Probab=99.55  E-value=7.6e-13  Score=134.44  Aligned_cols=168  Identities=15%  Similarity=0.141  Sum_probs=114.2

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +...++.++...+|+++|+++.+.  +..+.++||+.|+..++....  .++++||+.+..|.+.......+.       
T Consensus        39 ~~Y~r~g~p~~~~lE~~la~leg~--~~~v~~ssG~~Ai~~~l~all--~~Gd~Vv~~~~~y~~t~~~~~~l~-------  107 (397)
T PRK05939         39 FTYARQGTPTTAALEAKITKMEGG--VGTVCFATGMAAIAAVFLTLL--RAGDHLVSSQFLFGNTNSLFGTLR-------  107 (397)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHHc--CCCCEEEECCCccccHHHHHHHHH-------
Confidence            334456688999999999999864  446788899999999987653  367789888877754322111110       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                         ..|+....++.       .|    .+++++.++    +++++|++|.++|++|.+.+    +++|.++|++||+++|
T Consensus       108 ---~~G~~v~~v~~-------~d----~e~l~~~l~----~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~li  165 (397)
T PRK05939        108 ---GLGVEVTMVDA-------TD----VQNVAAAIR----PNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYV  165 (397)
T ss_pred             ---hcCCEEEEECC-------CC----HHHHHHhCC----CCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEE
Confidence               11333332221       12    567777774    36889999999999998866    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeecccccc-CccccccccC
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPLGAVVTT  338 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pig~v~~~  338 (480)
                      +|++|..    + ..+.....|....+.+++|.+++ |..+|+++..
T Consensus       166 vD~t~a~----~-~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~  207 (397)
T PRK05939        166 VDNTMTS----P-WLFRPKDVGASLVINSLSKYIAGHGNALGGAVTD  207 (397)
T ss_pred             EECCccc----c-cccCccccCCEEEEecCeecccCCCCeEEEEEec
Confidence            9999852    1 11111122333333478899996 8888887764

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.55  E-value=1.2e-12  Score=134.43  Aligned_cols=163  Identities=21%  Similarity=0.219  Sum_probs=113.6

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      ....++...+|+++|++..+.  +..++++||++|+.++++.+..  ++++||+....|+|........         ..
T Consensus        58 ~r~~~p~~~~le~~lA~l~g~--~~al~~~SG~~Ai~~al~all~--pGd~VIv~~~~y~~t~~~~~~~---------~~  124 (427)
T PRK05994         58 TRITNPTNAVLEERVAALEGG--TAALAVASGHAAQFLVFHTLLQ--PGDEFIAARKLYGGSINQFGHA---------FK  124 (427)
T ss_pred             ECCCCccHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHhC--CCCEEEEecCcchhHHHHHHHH---------HH
Confidence            345577788999999999864  4578999999999999987643  6789999999997643221100         01


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      ..|+....++.       .|    .+++++.++    +++++|++|.++|++|.+.+    +++|.++|++||+++|+|+
T Consensus       125 ~~G~~v~~vd~-------~d----~~~l~~ai~----~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~  185 (427)
T PRK05994        125 SFGWQVRWADA-------DD----PASFERAIT----PRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDN  185 (427)
T ss_pred             hcCcEEEEECC-------CC----HHHHHHhcC----cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEEC
Confidence            12333332221       12    467777774    36889999999999998876    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCcceee--ecccccc-Ccccccccc
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPLGAVVT  337 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~-G~pig~v~~  337 (480)
                      +|+.    + .  ........+|+++  ++|.+++ |-.+|+++.
T Consensus       186 a~a~----~-~--~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~  223 (427)
T PRK05994        186 TLAS----P-Y--LIRPIEHGADIVVHSLTKFLGGHGNSMGGIIV  223 (427)
T ss_pred             Cccc----c-c--cCCccccCCcEEEEcCccccCCCCCcEEEEEE
Confidence            9862    2 1  1222345677764  6799985 445665444

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.54  E-value=5.7e-12  Score=117.48  Aligned_cols=313  Identities=17%  Similarity=0.183  Sum_probs=189.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEE
Q 011669          111 VCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIIS  189 (480)
Q Consensus       111 ~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~  189 (480)
                      .++||-||++.+-+.+-++..                   ...+.. +..-..+..||+.+.|.|+-....  +++.+++
T Consensus        39 ~~lgh~sPe~~qIm~~v~egi-------------------kyVFkT~n~~tf~isgsGh~g~E~al~N~le--Pgd~vLv   97 (385)
T KOG2862|consen   39 PSLGHMSPEFVQIMDEVLEGI-------------------KYVFKTANAQTFVISGSGHSGWEAALVNLLE--PGDNVLV   97 (385)
T ss_pred             CccccCCHHHHHHHHHHHHHH-------------------HHHhccCCCceEEEecCCcchHHHHHHhhcC--CCCeEEE
Confidence            456777777777665544432                   222221 123467888999999999986655  7888888


Q ss_pred             EcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcc
Q 011669          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (480)
Q Consensus       190 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  269 (480)
                      +..+-.|....-+.-.           .|+.....+.++....      -++++++.+.++   ++.+|.+-..-..+|+
T Consensus        98 ~~~G~wg~ra~D~~~r-----------~ga~V~~v~~~~G~~~------~le~i~~~lsqh---~p~~vfv~hgdsSTgV  157 (385)
T KOG2862|consen   98 VSTGTWGQRAADCARR-----------YGAEVDVVEADIGQAV------PLEEITEKLSQH---KPKAVFVTHGDSSTGV  157 (385)
T ss_pred             EEechHHHHHHHHHHh-----------hCceeeEEecCcccCc------cHHHHHHHHHhc---CCceEEEEecCccccc
Confidence            7766655433322211           1222222222111111      157788888764   6677888777778888


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCC
Q 011669          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN  349 (480)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~  349 (480)
                      .++   .++...++|++|+.+|++|-|-+ +|  | ..|.++.+|+..-...--|++++.-.++-+..++...+.++.+.
T Consensus       158 ~q~---~~~~~g~lc~k~~~lllVD~VaS-lg--g-t~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK  230 (385)
T KOG2862|consen  158 LQD---LLAISGELCHKHEALLLVDTVAS-LG--G-TEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRK  230 (385)
T ss_pred             cch---HHHHHHHHhhcCCeEEEEechhh-cC--C-ccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhcc
Confidence            765   35677899999999999999987 54  3 45667777764433344599995444456888998888886542


Q ss_pred             c--c---------ccCC-----------CcHH-HHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHhHHhcCceee
Q 011669          350 Y--F---------NTFG-----------GNPV-CTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGIIGD  403 (480)
Q Consensus       350 ~--~---------~t~~-----------~~~~-~~aaa~a~L~~i~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~  403 (480)
                      .  .         .+|.           ..|+ ......++|..|-++.   ..++-++++++++..|+++--+.-....
T Consensus       231 ~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e  310 (385)
T KOG2862|consen  231 TKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDE  310 (385)
T ss_pred             CCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecCh
Confidence            1  0         1111           1233 3344557777776654   4566677888888888886211100000


Q ss_pred             EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---CCCEEEEeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---YGNVFRITPP-LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       404 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~-~~~t~~~id~~l~~l~~~l~~  479 (480)
                      -........+.        .|...+..++...+..++.+...+|.   .+.++||..- .+.+.+.|+..++.|..++.+
T Consensus       311 ~~rlptvttv~--------vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  311 ELRLPTVTTVK--------VPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             hhccCcceeee--------cCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence            00000011111        23444567788888888655544433   2578999743 334779999999999988753

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.54  E-value=2.4e-12  Score=131.06  Aligned_cols=307  Identities=14%  Similarity=0.066  Sum_probs=175.8

Q ss_pred             ChHHHHHHHHHHHhCCCC-CCEEEEeCCHH-HHHHHHHHHHHhhc-CCceEEEEcCCcccccccccccccCCCccccccC
Q 011669          140 NHAIADFAEALASKMPGN-LKVVFFTNSGT-EANELAIMMARLYT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~-~~~v~f~~sGs-eA~~~Alk~ar~~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  216 (480)
                      .....++.+.+++.++.. .+.++++++|| .++.+++..++... +++.||+.... |-.+..++...+.         
T Consensus       104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~t-h~S~~kAi~~~G~---------  173 (444)
T TIGR03531       104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRID-QKSCIKAISTAGF---------  173 (444)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcC-hHHHHHHHHHcCC---------
Confidence            345567777788887543 23688999999 79998888776432 35678887776 5555555444432         


Q ss_pred             CCeeEecCCC-CcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          217 TGVHHALNPD-PYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       217 ~g~~~~~~p~-~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                         ..+.++. .....|.-|    .++++++|+...++.+.+|+..|..+..|...    .+++|.++|++||+++|+|+
T Consensus       174 ---~pv~Vd~~~d~~~~~iD----~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~d----dL~eIa~la~k~gI~lIvDa  242 (444)
T TIGR03531       174 ---EPRVIETVLDGDELTTD----VEDIERAIEEIGPDNILCVLSTTSCFAPRSPD----DIEEIAKICANYDIPHIVNN  242 (444)
T ss_pred             ---eEEEeeeeecCcCCCcC----HHHHHHHHHhccCCCEEEEEEcCCcCCCcchh----CHHHHHHHHHHcCCEEEEEC
Confidence               1111111 011123334    67888888743324667777666544334333    39999999999999999999


Q ss_pred             cccCccccCCCcccccccCC-Ccceeee--cccccc-Ccccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH
Q 011669          296 VQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGN-GIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~-~pDivt~--sK~~g~-G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~  370 (480)
                      +|......-.+.. ...... ..|++++  .|.+.. |. -|.++. ++++++.+.....+ .. .+...+.+....+..
T Consensus       243 Ayg~~~~~~~~~~-~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g-~~-~~s~~~~~~~~ll~~  318 (444)
T TIGR03531       243 AYGLQSNKYMELI-NKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPG-RA-SASPSLDVLITLLSL  318 (444)
T ss_pred             cCcCcChhhhhhh-hccccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccC-CC-CChHHHHHHHHHHHh
Confidence            9963210000000 011111 2466654  598884 43 344446 57787777643222 22 223344444444433


Q ss_pred             hhh--hHHHHHHHHHHHHHHHHHHHhHHhcCc-eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCce----e
Q 011669          371 IQK--DKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL----V  443 (480)
Q Consensus       371 i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~----v  443 (480)
                      -.+  +++.++..++.+++.+.|+++..+++. +.+++.-..-+++.+..-.      ......+...|..++|-    |
T Consensus       319 G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~------~~~~~~~g~~l~~~~v~g~r~v  392 (444)
T TIGR03531       319 GSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK------GKDPTMLGSMLYSRRVTGPRVV  392 (444)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc------ccCHHHHHHHHHhCCCCCceee
Confidence            222  356677778888999999999888753 2233222223344442110      11245566677777652    2


Q ss_pred             eccC-------cC---C--------CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          444 GKGG-------FY---G--------NVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       444 ~~~~-------~~---~--------~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      .++.       .|   +        .++-++..+.++++|||.++++|++++
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~  444 (444)
T TIGR03531       393 TNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL  444 (444)
T ss_pred             cCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence            2221       01   1        134444456689999999999999863

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PLN02509 cystathionine beta-lyase

Probab=99.54  E-value=1.6e-12  Score=133.69  Aligned_cols=215  Identities=14%  Similarity=0.068  Sum_probs=134.1

Q ss_pred             ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC
Q 011669          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (480)
Q Consensus       137 ~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  216 (480)
                      .+.++...+++++++++.+  .+.+++++||+.|+.+++.+   ..++++||+.++.|.+.........         ..
T Consensus       129 r~gnpt~~aLE~~lA~leg--~e~ai~~~SG~aAi~~il~l---l~~GD~VI~~~~~y~~t~~ll~~~l---------~~  194 (464)
T PLN02509        129 RSGNPTRDALESLLAKLDK--ADRAFCFTSGMAALSAVTHL---IKNGEEIVAGDDVYGGSDRLLSQVV---------PR  194 (464)
T ss_pred             CCCCHHHHHHHHHHHHHhC--CCEEEEeCcHHHHHHHHHHH---hCCCCEEEEcCCchhhHHHHHHHHH---------HH
Confidence            3457888999999999885  35677889999888655532   3467889999999866432211100         01


Q ss_pred             CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc
Q 011669          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (480)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  296 (480)
                      .|+....++.       .|    .+++++.++    .++++|++|.+.+++|.+..    +++|.++|++||+++|+||+
T Consensus       195 ~G~~v~~vd~-------~d----~e~l~~ai~----~~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A  255 (464)
T PLN02509        195 SGVVVKRVNT-------TN----LDEVAAAIG----PQTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNS  255 (464)
T ss_pred             CCeEEEEeCC-------CC----HHHHHHhCC----cCCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECC
Confidence            1333332221       12    466776664    36789999999998888765    99999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHh
Q 011669          297 QAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (480)
Q Consensus       297 ~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i  371 (480)
                      |. .+..+ .     ..+...|++  +++|.++| | .-.|+++++ +++.+.+...........+|..++.++..|+.+
T Consensus       256 ~a-~~~~~-~-----pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL  328 (464)
T PLN02509        256 IM-SPVLS-R-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM  328 (464)
T ss_pred             cc-ccccC-C-----hhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhH
Confidence            84 22222 1     122345766  56799985 3 335666654 444443321111111224677777777777765


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Q 011669          372 QKDKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       372 ~~~~~~~~~~~~~~~l~~~L~~  393 (480)
                      .  ...++..+...++.+.|++
T Consensus       329 ~--~R~~r~~~nA~~la~~L~~  348 (464)
T PLN02509        329 A--LRIEKQQENARKIAMYLSS  348 (464)
T ss_pred             H--HHHHHHHHHHHHHHHHHhc
Confidence            2  2445555555666665554

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.53  E-value=1.7e-12  Score=131.27  Aligned_cols=173  Identities=18%  Similarity=0.117  Sum_probs=115.4

Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ...++.++...+|.++++++.+.  +..++++||+.|+.+++.+   ..++++||+.++.|++.........        
T Consensus        43 ~y~r~~~p~~~~Le~~la~l~g~--~~al~~~SG~~Al~~~l~~---l~pGd~Vi~~~~~y~~t~~~~~~~~--------  109 (380)
T PRK06176         43 EYSRSGNPTRFALEELIADLEGG--VKGFAFASGLAGIHAVFSL---FQSGDHVLLGDDVYGGTFRLFDKVL--------  109 (380)
T ss_pred             cccCCCChhHHHHHHHHHHHhCC--CCEEEECCHHHHHHHHHHH---cCCCCEEEEcCCChhHHHHHHHHHH--------
Confidence            34567788999999999999864  4467889999999866642   2467889999988865432111110        


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                       ...|+....++.       .|    .+++++.++    +++++|++|..+|++|.+.+    +++|.++|++||+++|+
T Consensus       110 -~~~gi~v~~vd~-------~d----~e~l~~ai~----~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~viv  169 (380)
T PRK06176        110 -VKNGLSCTIIDT-------SD----LSQIKKAIK----PNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIV  169 (380)
T ss_pred             -HhcCeEEEEcCC-------CC----HHHHHHhcC----cCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEE
Confidence             112343332221       12    567777764    36889999988888888876    99999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCcceee--ecccccc-C-ccccccccC-HHHHHhhc
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTT-PEIAEVLT  346 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~-G-~pig~v~~~-~~~~~~l~  346 (480)
                      |++|+.. ..+ ..     .+...|+++  ++|.+++ | .-.|+++++ +++.+.+.
T Consensus       170 D~t~a~~-~~~-~p-----~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~  220 (380)
T PRK06176        170 DNTFATP-YYQ-NP-----LLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA  220 (380)
T ss_pred             ECCcccc-ccC-Cc-----cccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH
Confidence            9999742 112 11     133457765  5699985 4 334566664 56655554

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.53  E-value=1.6e-13  Score=122.27  Aligned_cols=167  Identities=23%  Similarity=0.208  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEe
Q 011669          143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA  222 (480)
Q Consensus       143 ~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~  222 (480)
                      +.++.+.+++.++.+.+.+++++||++|++.+++.++.  .+++|++.++.||+.........            |....
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~------------g~~~~   67 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG--PGDEVIVDANGHGSRYWVAAELA------------GAKPV   67 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC--CCCEEEEeecccceehhhHHHhc------------CCEEE
Confidence            46788899999855567899999999999999998754  46789999999988763111111            22222


Q ss_pred             cCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccc
Q 011669          223 LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR  302 (480)
Q Consensus       223 ~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr  302 (480)
                      .++.........+    .+.+++..   ...+++++++++.++++|...+    +++|.++|+++|+++|+||+|.++..
T Consensus        68 ~v~~~~~~~~~~~----~~~~~~~~---~~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~  136 (170)
T cd01494          68 PVPVDDAGYGGLD----VAILEELK---AKPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGAS  136 (170)
T ss_pred             EeccCCCCccchh----hhhhhhcc---ccCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccc
Confidence            2221111000000    11232222   2458899999999999888776    69999999999999999999997755


Q ss_pred             cCCCcccccccCCCcceeeec--cccccCccccccccC
Q 011669          303 TGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT  338 (480)
Q Consensus       303 ~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~  338 (480)
                      .. ..  .......+|+++.|  |.+++ .+.|+++++
T Consensus       137 ~~-~~--~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~  170 (170)
T cd01494         137 PA-PG--VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK  170 (170)
T ss_pred             cc-cc--cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence            43 11  12223458888776  99987 788888764

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.52  E-value=2e-12  Score=130.01  Aligned_cols=315  Identities=12%  Similarity=0.050  Sum_probs=176.7

Q ss_pred             CCHHHHHHHHHHHHhcc--ccccccC-------ChHHHHHHHHHHHhCCC-CCCEEEEeCC-HHHHHHHHHHHHHhhcCC
Q 011669          116 CHPYVVDSIVNQIKRIQ--HSTVLYL-------NHAIADFAEALASKMPG-NLKVVFFTNS-GTEANELAIMMARLYTGC  184 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~--~~~~~~~-------~~~~~~l~e~L~~~~~~-~~~~v~f~~s-GseA~~~Alk~ar~~~~~  184 (480)
                      .++.|.+|+.+.+....  +......       .....+.+++|+++++. ..++|+|+++ ||+|++.++.......++
T Consensus        10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~   89 (355)
T cd00611          10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGT   89 (355)
T ss_pred             CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCe
Confidence            57899999999875431  1000011       15567889999999975 3456888865 999999999865321112


Q ss_pred             ceEEEEcCCcccccccccc-cccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEccc
Q 011669          185 NDIISLRNAYHGNAAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI  263 (480)
Q Consensus       185 ~~ii~~~~~yhG~~~~~~~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi  263 (480)
                      ..+|+. +.| +....-+. -.+          ..+..++.+.  .+.|+..    .+..+..+    .++++.|.+..+
T Consensus        90 ~~~i~~-g~~-~~~~~~~a~~~g----------~~~~~~~~~~--~g~~~~~----~~~~~~~~----~~~~~lV~~~h~  147 (355)
T cd00611          90 ADYVVT-GAW-SAKAAKEAKRYG----------GVVVIVAAKE--EGKYTKI----PDVETWDL----APDAAYVHYCSN  147 (355)
T ss_pred             EEEEEC-CHH-HHHHHHHHHhcC----------CCcEEEeccc--ccCCCCC----CCHhhcCC----CCCCCEEEEeCC
Confidence            233332 333 21111010 001          0122222221  1112110    01111112    236778888888


Q ss_pred             CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHH
Q 011669          264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAE  343 (480)
Q Consensus       264 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~  343 (480)
                      .+.+|...+         ++++.||+++++|-+|+ +|..   ....+.++  .++.+--|.+| ...+|.+++++++.+
T Consensus       148 ~t~tG~~~~---------~i~~~~g~~~~VDa~qs-~g~~---~idv~~~~--~~~ss~~K~lG-P~G~g~l~~~~~~~~  211 (355)
T cd00611         148 ETIHGVEFD---------EVPDTGGVPLVADMSSN-ILSR---PIDVSKFG--VIYAGAQKNLG-PAGVTVVIVRKDLLG  211 (355)
T ss_pred             cccccEEcc---------eecccCCCeEEEEcccc-ccCC---CCCHHHhC--EEEeecccccC-CCceEEEEECHHHHh
Confidence            888887632         45566999999999998 4422   22223333  23322448775 345789999999887


Q ss_pred             hhcCCC-----------ccccCC-CcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc
Q 011669          344 VLTRRN-----------YFNTFG-GNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR  407 (480)
Q Consensus       344 ~l~~~~-----------~~~t~~-~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  407 (480)
                      .+.+..           ...+++ .|.....+..++|+.+.++    ++.++.+++.++++++|+++..-+........+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~r  291 (355)
T cd00611         212 KARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRAR  291 (355)
T ss_pred             hcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHc
Confidence            655421           011233 3444566666888887654    345666677777777777652111111111112


Q ss_pred             c-eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          408 G-FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       408 g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      . ..+.|.+...        .....+...+.++|+...++-...+.+|+++...+|++|||.++++|+++
T Consensus       292 s~~vvsf~~~~~--------~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         292 SRMNVPFRLGKE--------ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             CceEEEEEcCCh--------hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            2 3344443110        11244556788899985444222468999999999999999999999985

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.52  E-value=1.9e-12  Score=130.92  Aligned_cols=235  Identities=19%  Similarity=0.141  Sum_probs=141.2

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ...+.++...+|+++|+++.+.  +..++++||+.|+..++.+   ..++++||+.++.|.+.........         
T Consensus        44 y~r~~~p~~~~Le~~lA~l~g~--~~~~~~~sG~aai~~~~~~---l~~Gd~Viv~~~~y~~~~~~~~~~~---------  109 (377)
T PRK07671         44 YSRTGNPTRAALEELIAVLEGG--HAGFAFGSGMAAITAVMML---FSSGDHVILTDDVYGGTYRVMTKVL---------  109 (377)
T ss_pred             cCCCCChHHHHHHHHHHHHhCC--CceEEeCCHHHHHHHHHHH---hCCCCEEEECCCccchHHHHHHHHH---------
Confidence            3466788999999999999864  3457789999888766532   2367889999998864332211110         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+....++.       .|    .++++++++    +++++|++|..+|++|.+..    +++|.++|+++|+++|+|
T Consensus       110 ~~~G~~v~~v~~-------~d----~~~l~~ai~----~~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD  170 (377)
T PRK07671        110 NRFGIEHTFVDT-------SN----LEEVEEAIR----PNTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVD  170 (377)
T ss_pred             hcCCeEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEE
Confidence            012333333221       12    467777774    36789999888888887765    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-C-cccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      |+|... ..+ ..     .+...|++  +++|.++| + .-.|++++ ++++++.+........-..+|..+..++..++
T Consensus       171 ~a~~~~-~~~-~p-----~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~  243 (377)
T PRK07671        171 NTFMTP-YWQ-SP-----ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLK  243 (377)
T ss_pred             CCCCcc-ccC-Ch-----hhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcC
Confidence            998631 112 11     12234665  57799984 2 33455555 46677666533222222334555554444443


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee------------------eEeccceeEEEEE
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG------------------DVRGRGFLLGVEF  415 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~  415 (480)
                      .+..  ..++..++...+.+.|++    ++.+.                  ...|.|.++.|++
T Consensus       244 tl~~--R~~~~~~na~~la~~L~~----~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~  301 (377)
T PRK07671        244 TLGI--RMEEHETNSRAIAEFLNN----HPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV  301 (377)
T ss_pred             hHHH--HHHHHHHHHHHHHHHHHc----CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe
Confidence            3221  233344444444444443    33221                  1346678888888

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.52  E-value=2.7e-12  Score=129.38  Aligned_cols=238  Identities=15%  Similarity=0.088  Sum_probs=150.4

Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      .+.+..+|....|+++|+++-++  +..++++||+.|+.+++....  .+++.||+.+..|.+........         
T Consensus        55 ~YsR~~nPt~~~le~~la~LEg~--~~a~~~~SGmaAi~~~~~~ll--~~GD~Vv~~~~~Yg~t~~l~~~~---------  121 (395)
T PRK08114         55 FYGRRGTLTHFSLQEAMCELEGG--AGCALYPCGAAAVANAILAFV--EQGDHVLMTGTAYEPTQDFCSKI---------  121 (395)
T ss_pred             cccCCCChhHHHHHHHHHHHhCC--CeEEEEhHHHHHHHHHHHHHc--CCCCEEEEeCCCcHHHHHHHHHH---------
Confidence            34566789999999999998753  567889999999999887543  36788888888876554332111         


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC--CEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG--GLC  291 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g--ill  291 (480)
                      ....|+....++.       .|    .++++++++    +++++|++|.+.|+.|.+.+    +++|.++|+++|  +++
T Consensus       122 l~~~Gi~v~~vd~-------~d----~~~l~~~l~----~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~l  182 (395)
T PRK08114        122 LSKLGVTTTWFDP-------LI----GADIAKLIQ----PNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVI  182 (395)
T ss_pred             HHhcCcEEEEECC-------CC----HHHHHHhcC----CCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEE
Confidence            0112333322211       12    466777775    36899999999999999988    999999999985  999


Q ss_pred             EEcccccCccccCCCcccccccCCCcceee--ecccccc-C-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHH
Q 011669          292 IADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       292 I~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~  367 (480)
                      |+|.+++    +| ..  ++......|+++  ..|.++| | .-.|.++.++++.+.+.......--..+|..+...+..
T Consensus       183 vVDnT~a----~p-~~--~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rg  255 (395)
T PRK08114        183 MIDNTWA----AG-VL--FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRG  255 (395)
T ss_pred             EEECCCc----cc-cc--cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcC
Confidence            9999986    22 11  333344567775  5599986 3 67787788887666554221111113346655544443


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEe
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~  416 (480)
                      |+.+.  -..++..+....+.+.|++    +|.+..                  ..|.|.|+.|++.
T Consensus       256 l~TL~--lR~~~~~~na~~va~~L~~----hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~  316 (395)
T PRK08114        256 LRTLG--VRLRQHEESSLKVAEWLAE----HPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLK  316 (395)
T ss_pred             CCcHH--HHHHHHHHHHHHHHHHHHc----CCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEec
Confidence            33221  1233344444444444443    333221                  2467888888884

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.51  E-value=4.2e-12  Score=130.26  Aligned_cols=165  Identities=20%  Similarity=0.226  Sum_probs=114.6

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..++.++....|+++|+++.+.  +..++++||+.|+..++....  .++++|++..+.|++.........         
T Consensus        58 y~r~~~p~~~~Le~~lA~leg~--~~al~~~sG~~Ai~~al~~ll--~~GD~Vlv~~~~y~~t~~~~~~~~---------  124 (431)
T PRK08248         58 YTRIMNPTTDVFEKRIAALEGG--IGALAVSSGQAAITYSILNIA--SAGDEIVSSSSLYGGTYNLFAHTL---------  124 (431)
T ss_pred             eECCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEccCchhhHHHHHHHHH---------
Confidence            3456688899999999999863  567899999999999997553  367889998888765432211110         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+....++.       .|    .++++++++    +++++|+++.+.|++|.+.+    +++|.++|+++|+++|+|
T Consensus       125 ~~~Gv~v~~vd~-------~d----~e~l~~ai~----~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD  185 (431)
T PRK08248        125 PKLGITVKFVDP-------SD----PENFEAAIT----DKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVD  185 (431)
T ss_pred             HhCCEEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEe
Confidence            112444333322       12    567777774    36788999988888898876    899999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-CccccccccC
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVTT  338 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pig~v~~~  338 (480)
                      +++.. +..      ........|++  +++|.+++ |.++|++++.
T Consensus       186 ~t~a~-~~~------~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~  225 (431)
T PRK08248        186 NTFAS-PYL------LRPIEHGADIVVHSATKFIGGHGTSIGGVIVD  225 (431)
T ss_pred             CCCCc-ccc------CChhHcCCCEEEEcCccccCCCCCceEEEEEe
Confidence            99851 111      11112335665  56799996 7788877663

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.50  E-value=1.8e-11  Score=123.23  Aligned_cols=345  Identities=14%  Similarity=0.103  Sum_probs=189.3

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHH-HHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDS-IVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A-~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Al  175 (480)
                      ....|||+.+-.++       +.+.++ +.. +....-  ...-++...+|.+++++.++  .+.+++++||+.|...+.
T Consensus        36 ~~~v~iDLltDsgT-------~aMs~~q~a~-~~~GDe--~yag~~s~~~lE~~va~~~G--~~~av~v~sGT~Al~ll~  103 (450)
T TIGR02618        36 SEDVYIDLLTDSGT-------NAMSDKQWAG-LMMGDE--AYAGSRNFYHLERTVRELYG--FKYVVPTHQGRGAENLLS  103 (450)
T ss_pred             cCceEEEcccCCCc-------HHHHHHHHHH-hhhcch--hhcCCCcHHHHHHHHHHHHC--CCeEEEcCCHHHHHHHHH
Confidence            34589999876654       455555 322 222111  12236778899999999994  578999999999988643


Q ss_pred             HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC---CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ---TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~---~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (480)
                      .  ....+++.|  ..+.|...+...+...+. .+ ...+.   .+..   ..+++.+.+  |    +++++++|+....
T Consensus       104 ~--l~l~pGDeV--psn~~f~Tt~ahIe~~Ga-v~-vDi~~dea~~~~---~~~p~~Gni--D----~~~Le~aI~~~~~  168 (450)
T TIGR02618       104 Q--IAIKPGDYV--PGNMYFTTTRYHQEKNGA-TF-VDIIIDEAHDAQ---LNIPFKGNV--D----LKKLQKLIDEVGA  168 (450)
T ss_pred             H--hCCCCcCEE--CCceeHHHHHHHHHhCCe-EE-Eeeecccccccc---cCCCCCCCc--C----HHHHHHHhccccC
Confidence            2  222244444  444443333332322221 00 00000   0000   111222222  3    6889998875333


Q ss_pred             CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccc-------cCCCccccccc------CCCcce
Q 011669          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR-------TGSHFWGFEAH------GVVPDI  319 (480)
Q Consensus       253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr-------~G~~~~~~~~~------~~~pDi  319 (480)
                      .+++.|.++...+..|..+.+...+++++++|++||+.+|.|-++. |+-       .. .+......      --..|.
T Consensus       169 ~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gNA~~I~~re~-g~~~~~i~ei~~e~~~~aD~  246 (450)
T TIGR02618       169 DKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VENAYFIKEREQ-GYEDKSIAEILKEMMSYADG  246 (450)
T ss_pred             cccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hhChhhhhcccc-cccCCCHHHHHHHHhccCcE
Confidence            3556666666555443345577889999999999999999999885 321       00 01111110      013455


Q ss_pred             eeeccccc-cCcccccccc--CHHHHHhhcCCC----ccccCCCcH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011669          320 VTMAKGIG-NGIPLGAVVT--TPEIAEVLTRRN----YFNTFGGNP-VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (480)
Q Consensus       320 vt~sK~~g-~G~pig~v~~--~~~~~~~l~~~~----~~~t~~~~~-~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L  391 (480)
                       +++|+.- +|.|+|.+++  ++++++.++...    ...|+++=. -.+.+..-+|+...+..+.++.....++|.+.|
T Consensus       247 -~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L  325 (450)
T TIGR02618       247 -CTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKL  325 (450)
T ss_pred             -EEEeeccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence             4445553 4567676555  678887766531    223555421 123333334554445566677777788888888


Q ss_pred             HHhHHhcCceeeEeccceeEEEEEecC----CCcCCCCHHHHHHHHHHH-HHcCceeeccCc-------------C--CC
Q 011669          392 TALKDKYGIIGDVRGRGFLLGVEFVTD----RQLKTPAKAETLYIMDKM-KEMGVLVGKGGF-------------Y--GN  451 (480)
Q Consensus       392 ~~l~~~~~~~~~v~g~g~~~~i~~~~~----~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~-------------~--~~  451 (480)
                      .+.  ..+++  .+..|..+.++...-    +....|    +..+.-.| ++.||--..-|.             .  -.
T Consensus       326 ~~~--Gvpv~--~p~ggh~V~vda~~~lph~~~~~~p----~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~e  397 (450)
T TIGR02618       326 KAA--GVPIV--EPVGGHAVFLDARRFLPHIPQDQFP----AQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLE  397 (450)
T ss_pred             HHC--CCccc--CCCCcceEEEEhHHhCCCCChhhCh----HHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccc
Confidence            776  34432  244566666765431    111122    23333333 355554322110             0  14


Q ss_pred             EEEEeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669          452 VFRITPP-LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       452 ~iRi~p~-~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+|+..| -..|.+++|.+.++|..+.++
T Consensus       398 l~rlaiprr~yt~~h~~~v~~~~~~~~~~  426 (450)
T TIGR02618       398 LVRLTIPRRVYTYAHMDVVADGIIKLYKH  426 (450)
T ss_pred             eeeeccccccccHhHHHHHHHHHHHHHhh
Confidence            6898877 456999999999999887653

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.49  E-value=8.4e-12  Score=127.99  Aligned_cols=165  Identities=20%  Similarity=0.191  Sum_probs=112.9

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +...++.++...+|+++++++.+..  .+++++||++|+.+++....  .++++||+....|++........        
T Consensus        56 ~~y~R~~~p~~~~le~~lA~l~g~~--~av~~sSGt~Al~~al~~ll--~~Gd~Vi~~~~~y~~t~~~~~~~--------  123 (433)
T PRK08134         56 HVYSRISNPTVAVLEERVAALEGGV--GAIATASGQAALHLAIATLM--GAGSHIVASSALYGGSHNLLHYT--------  123 (433)
T ss_pred             ceeecCcChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh--CCCCEEEEeCCccHHHHHHHHHH--------
Confidence            3334566889999999999998653  47899999999999997653  36778988888886543222110        


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                       ....|+....++.       +|    .++++++|+    +++++|++|.+.+++|.+.+    +++|.++|++||+++|
T Consensus       124 -l~~~Gi~v~~vd~-------~d----~~~l~~~i~----~~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~li  183 (433)
T PRK08134        124 -LRRFGIETTFVKP-------GD----IDGWRAAIR----PNTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLL  183 (433)
T ss_pred             -HhhCCeEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEE
Confidence             0112443333221       12    567888875    37889999998888998887    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeee--cccccc-Cccccccc
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGN-GIPLGAVV  336 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g~-G~pig~v~  336 (480)
                      +|.+|. .   | ..  ........|++++  .|.+++ |--+|.++
T Consensus       184 vD~t~a-~---~-~~--~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v  223 (433)
T PRK08134        184 VDSTFT-T---P-YL--LRPFEHGADLVYHSATKFLGGHGTAIGGVL  223 (433)
T ss_pred             EECCCc-c---c-cc--CCchhcCCCEEEeccccccCCCCCceEEEE
Confidence            999985 2   2 11  1112344677755  498875 54455443

>PLN02880 tyrosine decarboxylase

Probab=99.48  E-value=9.6e-12  Score=129.45  Aligned_cols=318  Identities=12%  Similarity=0.003  Sum_probs=180.9

Q ss_pred             ChHHHHHHHHHHHhCCCCC-------CEEEEeCCHHHHHHHHHHHHHhhcC--------CceEEEEcCCccccccccccc
Q 011669          140 NHAIADFAEALASKMPGNL-------KVVFFTNSGTEANELAIMMARLYTG--------CNDIISLRNAYHGNAAGTMGA  204 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~-------~~v~f~~sGseA~~~Alk~ar~~~~--------~~~ii~~~~~yhG~~~~~~~~  204 (480)
                      .....++.++|+++++.+.       ..-+|++||||||..||.+||...-        +.-++.....-|....-+..+
T Consensus       121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~  200 (490)
T PLN02880        121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQI  200 (490)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHH
Confidence            3455677788888875432       1357899999999999999987421        122444444446655554444


Q ss_pred             ccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHH
Q 011669          205 TAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (480)
Q Consensus       205 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  282 (480)
                      .+-+.       ..+..++.+..  +.+.-|    .+.|++.|++.  ....+.+|+..--..+.|.+.|    +++|.+
T Consensus       201 lGlg~-------~~v~~Vp~d~~--~~~~md----~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~  263 (490)
T PLN02880        201 AGIHP-------ENCRLLKTDSS--TNYALA----PELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGK  263 (490)
T ss_pred             cCCCH-------HHEEEeecCCC--cCCcCC----HHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHH
Confidence            43211       12334443211  111123    56777777531  1234566777666667788877    999999


Q ss_pred             HHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeeec--cccccCccccccccCHH--HHHhhcCCC----c---
Q 011669          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPE--IAEVLTRRN----Y---  350 (480)
Q Consensus       283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~s--K~~g~G~pig~v~~~~~--~~~~l~~~~----~---  350 (480)
                      +|++||+++++|-+|.|+...- ..+-....|+ ..|.+++.  |.+...+++|.++.+..  +.+.+....    +   
T Consensus       264 i~~~~~iwlHVDaA~gg~~~~~-~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~  342 (490)
T PLN02880        264 IAKSNGMWFHVDAAYAGSACIC-PEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKAS  342 (490)
T ss_pred             HHHHcCCEEEEehhhHHHHHhC-HHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccc
Confidence            9999999999999998753221 1111122354 57888765  99988899998887742  222222110    0   


Q ss_pred             --cccC--------CCcHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHhHHhcCceeeE-eccceeEEEEEe
Q 011669          351 --FNTF--------GGNPVCTAAGHAVLKVIQKDKLQNNAH---VVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFV  416 (480)
Q Consensus       351 --~~t~--------~~~~~~~aaa~a~L~~i~~~~~~~~~~---~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~  416 (480)
                        ..++        .+..+.....+.+|+.+-.+.+.++++   ++.+++.+.|++.    +...-+ .....++.|.+.
T Consensus       343 ~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~----~~~el~~~~~~~iv~Fr~~  418 (490)
T PLN02880        343 QANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQD----SRFEVVTPRIFSLVCFRLV  418 (490)
T ss_pred             cccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceEEEEEEEe
Confidence              0001        111222334445566666677777776   6677776666543    222211 122334555554


Q ss_pred             cCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCC-CCHHHHHHHHHHHHHHHhh
Q 011669          417 TDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLC-FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~-~t~~~id~~l~~l~~~l~~  479 (480)
                      ...............+.+.|.+.|-+......  ...++|+++... ++++|++.+++.|.+..++
T Consensus       419 ~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~  484 (490)
T PLN02880        419 PPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASK  484 (490)
T ss_pred             CCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            32111000112234566777776655433221  135799987544 4569999999999887654

>PRK04311 selenocysteine synthase; Provisional

Probab=99.48  E-value=1.1e-11  Score=127.68  Aligned_cols=338  Identities=15%  Similarity=0.123  Sum_probs=186.3

Q ss_pred             EEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-c---ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHH
Q 011669           93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-V---LYLNHAIADFAEALASKMPGNLKVVFFTNSGT  168 (480)
Q Consensus        93 l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~---~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGs  168 (480)
                      ++...|..|.+-.++ +     --++++.+++.+.+....... .   ....+....+++.++++++.  +.++++|||+
T Consensus        81 vinatg~v~~tNlg~-s-----~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga--e~a~vv~sgt  152 (464)
T PRK04311         81 VINATGVVLHTNLGR-A-----LLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA--EDALVVNNNA  152 (464)
T ss_pred             eecCCccEEeccCCC-C-----CCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC--CeEEEECCHH
Confidence            455556666554432 1     135899999998876542100 0   01123456788999998854  5688999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcc--cccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYH--GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yh--G~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      .|+..++...   .++++||+.++.+.  |.+.. +.        ......|+....++..-+    .+    .++++++
T Consensus       153 aAl~l~l~~l---~~GdeVIvs~~e~~~~ggs~~-i~--------~~~~~~G~~l~~v~~~~~----t~----~~dle~a  212 (464)
T PRK04311        153 AAVLLALNAL---AAGKEVIVSRGELVEIGGAFR-IP--------DVMRQAGARLVEVGTTNR----TH----LRDYEQA  212 (464)
T ss_pred             HHHHHHHHHh---CCCCEEEEcchhhhhcCcchh-hH--------HHHHHCCcEEEEECCCCC----CC----HHHHHHh
Confidence            9999888542   36678888776433  21111 00        001112444333221100    11    5678887


Q ss_pred             HHccCCCceEEEEEcccCCC--Cc--ceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC-----CCcccccccCCCc
Q 011669          247 IDFGTSGHVAGFLSESIQGV--GG--IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-----SHFWGFEAHGVVP  317 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~--~G--~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G-----~~~~~~~~~~~~p  317 (480)
                      ++    +++++|+++...+.  .|  ...+    +++|.++|++||+++|+|....-++-.+     ......+......
T Consensus       213 I~----~~TklV~~vh~sN~~i~G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~Ga  284 (464)
T PRK04311        213 IN----ENTALLLKVHTSNYRIEGFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGV  284 (464)
T ss_pred             cC----ccCeEEEEEcCCCccccccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCC
Confidence            75    36788887776553  34  3334    9999999999999999999432111111     0111111123457


Q ss_pred             ceeeec--cccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHH------------HHHHH
Q 011669          318 DIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKL------------QNNAH  381 (480)
Q Consensus       318 Divt~s--K~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~------------~~~~~  381 (480)
                      |++++|  |.++|. ..|++++++++++.+......-.+...-...++-.++|...-+  +.+            .++..
T Consensus       285 Div~fSg~K~LgGp-~~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~  363 (464)
T PRK04311        285 DLVTFSGDKLLGGP-QAGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELR  363 (464)
T ss_pred             cEEEecCcccccCC-ceEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHH
Confidence            999888  999865 3788999999988776432222333333444444455542211  111            14444


Q ss_pred             HHHHHHHHHHHHhHHh-c--Cceee--Eecccee-------EEEEEecCCCcCCCCHHHHHHHHHHHHHc--CceeeccC
Q 011669          382 VVGSYLKERLTALKDK-Y--GIIGD--VRGRGFL-------LGVEFVTDRQLKTPAKAETLYIMDKMKEM--GVLVGKGG  447 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~~-~--~~~~~--v~g~g~~-------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--Gv~v~~~~  447 (480)
                      ++...+.+.|+..... +  .++..  .-|.|.+       +.+.+...       ......+.+.|++-  .|+.+   
T Consensus       364 ~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~-------~~~~~~l~~~lr~~~~~i~~r---  433 (464)
T PRK04311        364 ARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPK-------DRSLEALAARLRLLPPPVIGR---  433 (464)
T ss_pred             HHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCC-------CCCHHHHHHHHhcCCCCEEEE---
Confidence            4555555555443110 0  01100  1122222       22333211       11246677777763  35544   


Q ss_pred             cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          448 FYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       448 ~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ...+.+.+-+- +..++|++.++++|.+++.
T Consensus       434 ~~~~~~~ld~r-~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        434 IEDGRLLLDLR-TLEEEDEERLAAALLEALN  463 (464)
T ss_pred             EECCEEEEEeC-cCCHHHHHHHHHHHHHHhh
Confidence            22456666643 7789999999999998764

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.48  E-value=7.7e-12  Score=127.54  Aligned_cols=154  Identities=18%  Similarity=0.125  Sum_probs=106.1

Q ss_pred             ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC
Q 011669          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (480)
Q Consensus       137 ~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  216 (480)
                      +..++...+|+++++++.+.  +.++.++||+.|+.+++..+.  .+++.||+....|.+.....-..         ...
T Consensus        57 R~~nPtv~~lE~~la~leg~--~~av~~~SG~aAi~~al~all--~~GD~VI~~~~~Y~~T~~~~~~~---------l~~  123 (432)
T PRK06702         57 RIGNPTLAAFEQKLAELEGG--VGAVATASGQAAIMLAVLNIC--SSGDHLLCSSTVYGGTFNLFGVS---------LRK  123 (432)
T ss_pred             CCCCcHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHhc--CCCCEEEECCCchHHHHHHHHHH---------HHH
Confidence            34478999999999999864  457889999999999998553  36789999999996543321110         001


Q ss_pred             CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc
Q 011669          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (480)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  296 (480)
                      .|+....+.      +..|    .++++++|+    +++++|++|...++.+.+..    +++|.++|++||+++|+|++
T Consensus       124 ~Gi~v~~vd------~~~d----~~~l~~~I~----~~Tk~I~~e~pgnP~~~v~D----i~~I~~iA~~~gi~livD~T  185 (432)
T PRK06702        124 LGIDVTFFN------PNLT----ADEIVALAN----DKTKLVYAESLGNPAMNVLN----FKEFSDAAKELEVPFIVDNT  185 (432)
T ss_pred             CCCEEEEEC------CCCC----HHHHHHhCC----cCCeEEEEEcCCCccccccC----HHHHHHHHHHcCCEEEEECC
Confidence            133322211      1112    467888875    36789999988777877766    99999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCccee--eecccccc
Q 011669          297 QAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN  328 (480)
Q Consensus       297 ~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~  328 (480)
                      +.    +   +..++......||+  +++|.++|
T Consensus       186 ~~----t---P~~~~pl~~GADIvv~S~TKy~~G  212 (432)
T PRK06702        186 LA----T---PYLCQAFEHGANIIVHSTTKYIDG  212 (432)
T ss_pred             CC----c---hhhCChhhcCCCEEEEccccccCC
Confidence            73    2   22233233345555  78898874

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.47  E-value=2.9e-11  Score=133.79  Aligned_cols=302  Identities=14%  Similarity=0.204  Sum_probs=176.0

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCCCccccc
Q 011669          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..+.++.+.|++.++.+ ...+..|+|+.++..+|..+|.+.      .+++|++ ..+-|+.........         
T Consensus       542 ~~i~e~q~~l~eltG~d-~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vli-s~~aH~snp~sa~~~---------  610 (954)
T PRK05367        542 ELIDQLEAWLAEITGYD-AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLI-PSSAHGTNPASAVMA---------  610 (954)
T ss_pred             HHHHHHHHHHHHHHCCC-CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEE-EchhhhhhHHHHHHC---------
Confidence            44568888999988654 344556688899988887777642      1233444 455666555443332         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                         |+..+.++....+.  .|    .++|++.++.. ..++++|++......|+...+    +++|.++|+++|+++++|
T Consensus       611 ---G~~vv~v~~d~~G~--iD----~~~L~~~i~~~-~~~la~V~it~pst~G~~e~~----I~eI~~i~h~~G~~v~VD  676 (954)
T PRK05367        611 ---GMKVVVVACDENGN--ID----LDDLRAKAEEH-ADNLAAIMITYPSTHGVFEET----IREICEIVHEHGGQVYLD  676 (954)
T ss_pred             ---CCEEEEECCCCCCC--cC----HHHHHHHHhcc-CCCeEEEEEEcCCCCeeecCC----HHHHHHHHHHcCCEEEEE
Confidence               33333332211111  23    67888888642 235777766554443333345    999999999999999999


Q ss_pred             ccccCccccCCCccccccc-CCCcceeeec--cccc-----cCccccccccCHHHHHhhcCCCc--------cccCCCcH
Q 011669          295 EVQAGFARTGSHFWGFEAH-GVVPDIVTMA--KGIG-----NGIPLGAVVTTPEIAEVLTRRNY--------FNTFGGNP  358 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~-~~~pDivt~s--K~~g-----~G~pig~v~~~~~~~~~l~~~~~--------~~t~~~~~  358 (480)
                      .++.+ +..+     +... ....|+++++  |.|+     ||-.+|.+.+++.+...+.....        .++....+
T Consensus       677 gA~~~-al~~-----l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~  750 (954)
T PRK05367        677 GANMN-AQVG-----LARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAP  750 (954)
T ss_pred             CcChh-hccC-----CCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHH
Confidence            99952 1112     1111 2346888776  9886     34557888888776655543211        12222223


Q ss_pred             H----HHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHhHHhcCceeeE-ecc-ceeEEEEEecCCCcCCCCHHHH
Q 011669          359 V----CTAAGHAVLKVIQKDKLQNNAH---VVGSYLKERLTALKDKYGIIGDV-RGR-GFLLGVEFVTDRQLKTPAKAET  429 (480)
Q Consensus       359 ~----~~aaa~a~L~~i~~~~~~~~~~---~~~~~l~~~L~~l~~~~~~~~~v-~g~-g~~~~i~~~~~~~~~~~~~~~~  429 (480)
                      .    ....++..+..+-.+.+.+..+   .+.+|+.++|++.   ++....- .+. -.-+.+++..-+.   ......
T Consensus       751 ~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~---~~~~~~~~~~~~~~e~i~~~~~~~~---~~g~~~  824 (954)
T PRK05367        751 FGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH---YPVLYTGANGRVAHECILDLRPLKE---STGITV  824 (954)
T ss_pred             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh---cCccccCCCCCcccceEEEeecccc---cCCCCH
Confidence            3    2222333444444566655555   6788888888763   2221110 000 0011223311100   001124


Q ss_pred             HHHHHHHHHcCceeeccC-cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          430 LYIMDKMKEMGVLVGKGG-FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       430 ~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..+.+.|.+.|+...... ...+.++|+|.-..|++|+|++++++..+.++
T Consensus       825 ~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e  875 (954)
T PRK05367        825 DDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAE  875 (954)
T ss_pred             HHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHH
Confidence            679999999999876521 12578999999999999999999999876543

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.47  E-value=5.7e-11  Score=119.98  Aligned_cols=348  Identities=17%  Similarity=0.130  Sum_probs=184.4

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      ....|||+.+-.++       +.+.+++...+..+.-  ...-++...+|.+.++++++  .+.+++++||+.|+..+..
T Consensus        43 ~~~v~IDLlSDS~T-------~aMs~~q~a~~~vGDd--~Yagd~s~~~LE~~vAe~lG--~e~aV~v~sGTaAl~ll~~  111 (460)
T PRK13237         43 SEDVYIDLLTDSGT-------NAMSDRQWAGMMIGDE--AYAGSRNFYHLEETVQEYYG--FKHVVPTHQGRGAENLLSR  111 (460)
T ss_pred             cCcEEEECcccCCc-------hhccHHHHHHHhhcch--hhcCCCcHHHHHHHHHHHHC--CCeEEEeCCHHHHHHHHHH
Confidence            44689999877665       2334443333322211  11236678899999999995  5679999999999998643


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      +  ...+++ +| ..+.+...+...+...+. .+ .+....+.......+++.+.  -|    +++++++|+.....+++
T Consensus       112 l--~v~pGd-~V-p~n~~f~Tt~ahI~~~Ga-~f-vDi~~d~a~~~~~~~p~tgn--lD----~d~Le~~I~~~~~~~~~  179 (460)
T PRK13237        112 I--AIKPGQ-YV-PGNMYFTTTRYHQELNGG-IF-VDIIIDEAHDAQSDHPFKGN--VD----LDKLQALIDEVGAENIA  179 (460)
T ss_pred             h--CCCCcC-EE-CCccchHhhHHHHHhCCc-EE-EeeecccccccccCCCCCCC--cC----HHHHHHHhccccCCccC
Confidence            2  222344 33 223232222221322221 00 00000000000011122222  23    67899988754344555


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcc-------ccCCCcccccc------cCCCcceeeec
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA-------RTGSHFWGFEA------HGVVPDIVTMA  323 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg-------r~G~~~~~~~~------~~~~pDivt~s  323 (480)
                      .+.++-..+..|..+.|.+.+++|+++|++||+.+|.|-++. +|       |.. .+++...      ..-.-|+++||
T Consensus       180 lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~-~y~~~~i~ei~~e~~s~aD~~t~S  257 (460)
T PRK13237        180 YICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREE-GYQDKSIKEIVHEMFSYADGCTMS  257 (460)
T ss_pred             ceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhccccc-ccCCCcHhHHhhhccCcCcEEEEe
Confidence            555554444443345577789999999999999999999886 44       111 1111111      11245888776


Q ss_pred             --cccccCccc-cccccC-HHHHHhhcCCC----ccccCCCcHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 011669          324 --KGIGNGIPL-GAVVTT-PEIAEVLTRRN----YFNTFGGNPV-CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       324 --K~~g~G~pi-g~v~~~-~~~~~~l~~~~----~~~t~~~~~~-~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l  394 (480)
                        |.++.  ++ |+++.+ +++.+.++...    .+.|+++-.- -+.|..-.|+...++++.++.-+..++|.+.|.+.
T Consensus       258 ~~K~~~~--~~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        258 GKKDCLV--NIGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             CCCCCCC--CCceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence              65553  43 455554 67877776541    3346665322 12222222333334466666666677777777664


Q ss_pred             HHhcCceeeEeccceeEEEEEecC----CCcCCCCHHHHHHHHHHH-HHcCceeeccCc-------------C--CCEEE
Q 011669          395 KDKYGIIGDVRGRGFLLGVEFVTD----RQLKTPAKAETLYIMDKM-KEMGVLVGKGGF-------------Y--GNVFR  454 (480)
Q Consensus       395 ~~~~~~~~~v~g~g~~~~i~~~~~----~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~-------------~--~~~iR  454 (480)
                        ..|++.  +..|.-+.++...-    +....|    +..+.-.| ++-||--..-|.             .  -..+|
T Consensus       336 --Gvpv~~--p~ggH~v~vda~~~lph~~~~~~p----~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~r  407 (460)
T PRK13237        336 --GVPIVE--PVGGHAVFLDARRFLPHLPQDQFP----AQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVR  407 (460)
T ss_pred             --CCceec--CCCceEEEEEhHHhCCCCCcccCh----HHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceee
Confidence              334332  34455455553221    111122    23333333 344554321110             0  14689


Q ss_pred             EeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669          455 ITPP-LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       455 i~p~-~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +..| -..|.+++|.+.++|..+.++
T Consensus       408 laiprr~yt~~h~~~v~~~~~~~~~~  433 (460)
T PRK13237        408 LTIPRRVYTYAHMDVVADSVIKLYKH  433 (460)
T ss_pred             eccccccccHHHHHHHHHHHHHHHHh
Confidence            8877 456999999999999887653

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.47  E-value=6.5e-12  Score=126.34  Aligned_cols=288  Identities=20%  Similarity=0.191  Sum_probs=166.2

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +...++.++....|.++|+++.++  +.++.++||.-|+.+++.....  .++.||+....|+|.....-...       
T Consensus        47 ~~Y~R~gnPt~~~le~~la~Le~g--~~a~~~~SGmaAi~~~l~~ll~--~Gd~iv~~~~~Y~~t~~~~~~~l-------  115 (386)
T PF01053_consen   47 YIYSRYGNPTVRALEQRLAALEGG--EDALLFSSGMAAISAALLALLK--PGDHIVASDDLYGGTYRLLEELL-------  115 (386)
T ss_dssp             CSBTTTC-HHHHHHHHHHHHHHT---SEEEEESSHHHHHHHHHHHHS---TTBEEEEESSSSHHHHHHHHHCH-------
T ss_pred             cceeccccccHHHHHHHHHHhhcc--cceeeccchHHHHHHHHHhhcc--cCCceEecCCccCcchhhhhhhh-------
Confidence            344567789999999999999854  6788999999999999886543  57889999999977433222111       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC-CEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG-GLC  291 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g-ill  291 (480)
                        +..|+....++.       .|    .++++++++    +++++|++|++.|+...+..    +++|+++|+++| +++
T Consensus       116 --~~~gv~v~~~d~-------~d----~~~l~~~l~----~~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~  174 (386)
T PF01053_consen  116 --PRFGVEVTFVDP-------TD----LEALEAALR----PNTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILV  174 (386)
T ss_dssp             --HHTTSEEEEEST-------TS----HHHHHHHHC----TTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EE
T ss_pred             --cccCcEEEEeCc-------hh----HHHHHhhcc----ccceEEEEEcCCCccccccc----HHHHHHHHHHhCCceE
Confidence              112444332211       12    578888885    38999999999888877766    999999999998 999


Q ss_pred             EEcccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCH--HHHHhhcCCCccccCC--CcHHHHHH
Q 011669          292 IADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTP--EIAEVLTRRNYFNTFG--GNPVCTAA  363 (480)
Q Consensus       292 I~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~--~~~~~l~~~~~~~t~~--~~~~~~aa  363 (480)
                      |+|......       +.++......|++  +.+|-++| | .-.|+++.+.  ++.+.+....  ..++  .+|..+..
T Consensus       175 vVDnT~atp-------~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~--~~~G~~~~p~da~l  245 (386)
T PF01053_consen  175 VVDNTFATP-------YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR--RLLGATLSPFDAWL  245 (386)
T ss_dssp             EEECTTTHT-------TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH--HHHT-B--HHHHHH
T ss_pred             Eeeccccce-------eeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh--hhcCccchHHHHHH
Confidence            999986421       1122222235665  67799985 3 5567777654  6766554321  1122  23444443


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE------------------eccceeEEEEEecCCCcCCCC
Q 011669          364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPA  425 (480)
Q Consensus       364 a~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~  425 (480)
                      .+..|+.+  .-..++..+....+.+    .++++|.+..|                  .|.|.++.|++...       
T Consensus       246 l~rgl~Tl--~~R~~~~~~nA~~lA~----~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~-------  312 (386)
T PF01053_consen  246 LLRGLRTL--PLRMERQNENAEALAE----FLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG-------  312 (386)
T ss_dssp             HHHHHTTH--HHHHHHHHHHHHHHHH----HHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH-------
T ss_pred             HhcCCCcH--HHHHHHHHHHHHHHHH----HHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccc-------
Confidence            33333221  1123333334444444    34445555433                  36667889998432       


Q ss_pred             HHHHHHHHHHHHH--cCceee--------cc---------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          426 KAETLYIMDKMKE--MGVLVG--------KG---------------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       426 ~~~~~~~~~~l~~--~Gv~v~--------~~---------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ......+.+.|.=  .|.-.+        |.               |...+.|||+..+    |+.+.+++-|+++|+
T Consensus       313 ~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  313 EEAARRFLDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL----EDPDDLIADLEQALE  386 (386)
T ss_dssp             HHHHHHHHHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S----S-HHHHHHHHHHHHH
T ss_pred             hhhhHhHHhhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc----CCHHHHHHHHHHhcC
Confidence            1234555555531  111111        10               1113578998554    567777888887764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PLN02590 probable tyrosine decarboxylase

Probab=99.47  E-value=3.7e-10  Score=117.91  Aligned_cols=317  Identities=11%  Similarity=0.023  Sum_probs=177.7

Q ss_pred             hHHHHHHHHHHHhCCCCC-------CEEEEeCCHHHHHHHHHHHHHhhcC-------Cce-EEEEcCCcccccccccccc
Q 011669          141 HAIADFAEALASKMPGNL-------KVVFFTNSGTEANELAIMMARLYTG-------CND-IISLRNAYHGNAAGTMGAT  205 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~-------~~v~f~~sGseA~~~Alk~ar~~~~-------~~~-ii~~~~~yhG~~~~~~~~~  205 (480)
                      ....++.++|+++++.+.       ..-+|++||||||..||.+||...-       ..+ ++.....-|-+..-+..+.
T Consensus       170 ~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~il  249 (539)
T PLN02590        170 ELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIG  249 (539)
T ss_pred             HHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHc
Confidence            445567777777775332       2357899999999999999987421       112 3333443454443333333


Q ss_pred             cCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHH
Q 011669          206 AQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (480)
Q Consensus       206 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  283 (480)
                      +-+       ...+..++.+.  ...+.-|    .+.|++.|++.  ....+.+|+..--....|.+-|    |++|.++
T Consensus       250 Glg-------~~~vr~Vp~d~--~~~~~md----~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~i  312 (539)
T PLN02590        250 GIH-------EENIRLLKTDS--STNYGMP----PESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGNI  312 (539)
T ss_pred             CCC-------cccEEEEeCCC--CCCCcCC----HHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHHH
Confidence            211       11244444331  1111123    56777777531  1224566666666666788877    9999999


Q ss_pred             HHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeeec--cccccCccccccccCHH--HHHhhcCCC---------
Q 011669          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPE--IAEVLTRRN---------  349 (480)
Q Consensus       284 ~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~s--K~~g~G~pig~v~~~~~--~~~~l~~~~---------  349 (480)
                      |++||++|++|-+|.|+...-... ..-..|+ ..|.+++.  |.+...+++|.++.+..  +.+.+....         
T Consensus       313 ~~~~g~WlHVDaA~GG~al~~~~~-r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~  391 (539)
T PLN02590        313 AKKYGIWLHVDAAYAGNACICPEY-RKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSK  391 (539)
T ss_pred             HHHhCCeEEEecchhhhhhcChhh-HHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccc
Confidence            999999999999998874322111 0112243 36777765  99988899998888753  322221100         


Q ss_pred             -----ccc--cC-CCcHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHhHHhcCceeeEecc-ceeEEEEEec
Q 011669          350 -----YFN--TF-GGNPVCTAAGHAVLKVIQKDKLQNNAH---VVGSYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVT  417 (480)
Q Consensus       350 -----~~~--t~-~~~~~~~aaa~a~L~~i~~~~~~~~~~---~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~  417 (480)
                           ...  +. .+-.+.....+.+|+.+-.+.+.+.++   ++.+++.+.|++    .+.+.-+... =..+.|.+..
T Consensus       392 ~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~----~~~fel~~~~~l~iVcFr~~~  467 (539)
T PLN02590        392 KDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQ----DPSFEVVTTRYFSLVCFRLAP  467 (539)
T ss_pred             cccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCceEEEEEEecC
Confidence                 000  11 122455556667777666666555544   445555555544    3332222221 1223344322


Q ss_pred             CCCcCCCCHHHHHHHHHHHHHcCceeeccCc-C-CCEEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Q 011669          418 DRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-Y-GNVFRITP-PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~-~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..............+.+.+.+.|.+...... . ..+||++. ...++++||+.+++.|.+...+
T Consensus       468 ~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~  532 (539)
T PLN02590        468 VDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK  532 (539)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            1110000122345677888888866543322 1 24789875 3457899999999999887654

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.46  E-value=3.8e-11  Score=118.79  Aligned_cols=311  Identities=19%  Similarity=0.200  Sum_probs=191.2

Q ss_pred             HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccc
Q 011669          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (480)
Q Consensus       118 p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~  197 (480)
                      .+..+++.+.++..+.+.    -+...++.++++++++  .+.++.++|||.|+.+|++..- ..+++.||+..-+|-..
T Consensus        15 ~~e~~~v~~vl~sg~i~~----G~~v~~FE~~~ae~~G--~k~ava~~sgT~AL~laL~al~-ig~GDeVI~ps~TfvAT   87 (374)
T COG0399          15 EEELAAVQEVLKSGWLTG----GPFVRRFEQAFAEYLG--VKYAVAVSSGTAALHLALLALA-IGPGDEVIVPSFTFVAT   87 (374)
T ss_pred             hHHHHHHHHHHHcCCeec----ChHHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHhcC-CCCCCEEEecCCchHHH
Confidence            466777777777654433    4677899999999994  5788999999999999998443 56788999988888655


Q ss_pred             cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChH
Q 011669          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  277 (480)
                      ....+..+..+.+           +.   .....|+-|    .+.+|+.|+    +++++||.-...|..   ..    +
T Consensus        88 an~i~~~Ga~PVF-----------vD---id~~T~nid----~~~ie~aIt----~~tKAIipVhl~G~~---~d----m  138 (374)
T COG0399          88 ANAVLLVGAKPVF-----------VD---IDPDTLNID----PDLIEAAIT----PRTKAIIPVHLAGQP---CD----M  138 (374)
T ss_pred             HHHHHHcCCeEEE-----------Ee---cCCcccCCC----HHHHHHHcc----cCCeEEEEehhccCC---CC----H
Confidence            5554444433221           11   111122234    678898886    358888877776532   22    8


Q ss_pred             HHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec----cccccCccccccccC-HHHHHhhcCCC-c-
Q 011669          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRRN-Y-  350 (480)
Q Consensus       278 ~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~~-~-  350 (480)
                      ++|.++|++||+++|.|.+|+ +|-+    +.-...|-.-|+.+||    |.++.| --|+++++ +++++.++... | 
T Consensus       139 ~~i~~la~~~~l~vIEDaAqa-~Ga~----y~gk~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG  212 (374)
T COG0399         139 DAIMALAKRHGLPVIEDAAQA-HGAT----YKGKKVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHG  212 (374)
T ss_pred             HHHHHHHHHcCCeEEEEcchh-ccCe----ecCcccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhC
Confidence            999999999999999999997 5422    1112335556788776    999865 44677776 56666654211 1 


Q ss_pred             --------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE--
Q 011669          351 --------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE--  414 (480)
Q Consensus       351 --------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~--  414 (480)
                                    +..+.-+-+.++.+++-|+.+  +++.++-+++.+++.+.|+++.. ........+.-.-+++.  
T Consensus       213 ~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l--~~~~~~R~~~a~~Y~~~l~~~~~-~~~p~~~~~~~~~~~~~~i  289 (374)
T COG0399         213 LSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERL--DEINERRREIAQIYAEALKGLPG-ITLPPEPDGAVHAWHLYTI  289 (374)
T ss_pred             cCCCccccceeeecccccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-ccccCCCCCceeeeeeeEE
Confidence                          122333456666677777654  44556666666666666665521 11111111111111111  


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCcee----ecc--------------CcC-------CCEEEEeCCCCCCHHHHHHH
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLV----GKG--------------GFY-------GNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v----~~~--------------~~~-------~~~iRi~p~~~~t~~~id~~  469 (480)
                      +..+.      ...-+.+.+.|.++||..    .|.              +..       ...+.+=..-..+++++++.
T Consensus       290 ~~~~~------~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V  363 (374)
T COG0399         290 LVDEE------GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRV  363 (374)
T ss_pred             EecCC------CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHH
Confidence            11111      122467888899996552    331              000       12444433345799999999


Q ss_pred             HHHHHHHHhh
Q 011669          470 VDVMDYSLSK  479 (480)
Q Consensus       470 l~~l~~~l~~  479 (480)
                      ++.|++++.+
T Consensus       364 ~~~l~~~~~~  373 (374)
T COG0399         364 IEALKEVLGS  373 (374)
T ss_pred             HHHHHHHhcc
Confidence            9999998864

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.46  E-value=1.9e-12  Score=126.68  Aligned_cols=229  Identities=12%  Similarity=0.114  Sum_probs=129.6

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCC
Q 011669          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~  217 (480)
                      .+...+.++.+++++.++.+ +.+++++|+++++..++..+.  .++++|++.+++|..... .+...+           
T Consensus        56 ~~~g~i~~~~~~~A~~~ga~-~~~~~~~Gst~a~~~~l~al~--~~gd~Vlv~~~~h~s~~~-~~~~~g-----------  120 (294)
T cd00615          56 DPTGPIKEAQELAARAFGAK-HTFFLVNGTSSSNKAVILAVC--GPGDKILIDRNCHKSVIN-GLVLSG-----------  120 (294)
T ss_pred             CCChHHHHHHHHHHHHhCCC-CEEEEcCcHHHHHHHHHHHcC--CCCCEEEEeCCchHHHHH-HHHHCC-----------
Confidence            34566788888888888643 444459999999999987654  367888888887654332 233322           


Q ss_pred             CeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc
Q 011669          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ  297 (480)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~  297 (480)
                       ...+.++......|+.......+++++.++..  .++++|++... +..|.+.+    +++|.++|++||+++|+||+|
T Consensus       121 -~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~--~~~k~v~l~~p-~~~G~~~d----l~~I~~~~~~~g~~livDeA~  192 (294)
T cd00615         121 -AVPVYLKPERNPYYGIAGGIPPETFKKALIEH--PDAKAAVITNP-TYYGICYN----LRKIVEEAHHRGLPVLVDEAH  192 (294)
T ss_pred             -CEEEEecCccCcccCcCCCCCHHHHHHHHHhC--CCceEEEEECC-CCCCEecC----HHHHHHHHHhcCCeEEEECcc
Confidence             11111111111111100011167788888642  24555554432 34787766    999999999999999999999


Q ss_pred             cCc-cccCCCcccccccCCCccee--eeccccccCccccccc-cCHHH--HHhhcCC-CccccCCCcHHHHHHHHHHHHH
Q 011669          298 AGF-ARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVV-TTPEI--AEVLTRR-NYFNTFGGNPVCTAAGHAVLKV  370 (480)
Q Consensus       298 tgf-gr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~-~~~~~--~~~l~~~-~~~~t~~~~~~~~aaa~a~L~~  370 (480)
                      ... ...+ .+ .........|++  +++|.+ +|++.|+++ .+.+.  .+.+... ....|.+.+.+.+++..++++.
T Consensus       193 ~~~~~~~~-~~-~~~~~~~~~div~~S~hK~l-~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~  269 (294)
T cd00615         193 GAHFRFHP-IL-PSSAAMAGADIVVQSTHKTL-PALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAM  269 (294)
T ss_pred             hhhhccCc-cc-CcchhhcCCcEEEEchhccc-chHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH
Confidence            642 2222 11 111112245666  567987 455554443 44331  1122211 1223445556666666666666


Q ss_pred             hhh--hHHHHHHHHHHHHHHHHHH
Q 011669          371 IQK--DKLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       371 i~~--~~~~~~~~~~~~~l~~~L~  392 (480)
                      +..  +++.++..++.++++++|.
T Consensus       270 ~~~~g~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         270 MALEGKELVEELIELALYARQEIN  293 (294)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHh
Confidence            543  3456666777777776654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.45  E-value=1.3e-11  Score=126.61  Aligned_cols=164  Identities=20%  Similarity=0.244  Sum_probs=109.2

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      .++.++...+|+++|+++.+.  +..++++||+.|+..++....  .+++.||+....|.+.. ..+..        ...
T Consensus        64 sr~~~p~~~~Le~~lA~l~g~--~~av~~sSG~aAi~~al~all--~~Gd~Vv~~~~~y~~t~-~~~~~--------~l~  130 (436)
T PRK07812         64 TRIMNPTQDVVEQRIAALEGG--VAALLLASGQAAETFAILNLA--GAGDHIVSSPRLYGGTY-NLFHY--------TLP  130 (436)
T ss_pred             cCCCCchHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHHh--CCCCEEEEeCCcchHHH-HHHHH--------Hhh
Confidence            344578888999999999854  557899999999999996543  36778888877764432 21110        001


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      ..|+.....++.      .|    .++++++++    +++++|++|.+.++.|.+.+    +++|.++|++||+++|+|+
T Consensus       131 ~~Gi~v~~vdd~------~d----~e~l~~ai~----~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~  192 (436)
T PRK07812        131 KLGIEVSFVEDP------DD----LDAWRAAVR----PNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDN  192 (436)
T ss_pred             cCeEEEEEECCC------CC----HHHHHHhCC----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEEC
Confidence            124443333211      12    566777664    36889999999999999988    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCccee--eecccccc-Ccccccccc
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVT  337 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pig~v~~  337 (480)
                      ++.. +...      .......|++  +++|.+++ |--+|+++.
T Consensus       193 t~a~-~~~~------~pl~~GaDivv~S~tK~lgg~G~~i~G~vv  230 (436)
T PRK07812        193 TIAT-PYLI------RPLEHGADIVVHSATKYLGGHGTAIAGVIV  230 (436)
T ss_pred             CCcc-cccC------CchhcCCCEEEEecccccCCCCCeEEEEEE
Confidence            8852 1111      1112235665  67799984 433444444

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.45  E-value=6.2e-11  Score=128.35  Aligned_cols=298  Identities=13%  Similarity=0.162  Sum_probs=177.3

Q ss_pred             hHHHHHHHHHHHhCCCCCCEE-EEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          141 HAIADFAEALASKMPGNLKVV-FFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v-~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ..+.+|.+.|++.++  ++.+ +.-+||+.++.++++..|.|      ++|++||+. .+-||........         
T Consensus       543 q~i~elq~~l~eLtG--md~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp-~saHgtNpasa~~---------  610 (954)
T PRK12566        543 AMIDELEAWLCAITG--FDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIP-SSAHGTNPASAQM---------  610 (954)
T ss_pred             HHHHHHHHHHHHHHC--CCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEec-ccccccCHHHHHH---------
Confidence            345688888899985  4433 45569999998899888875      345555554 4666655443222         


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                         .|+..+.+|....+.  .|    +++|++.+++. .+++++|++...+..|+...+    +++|.++|+++|+++++
T Consensus       611 ---~GieVv~Vp~D~~G~--iD----le~L~a~I~~~-~~~laaVmiT~Pnt~Gv~e~~----V~eI~~iah~~Galv~v  676 (954)
T PRK12566        611 ---AGMRVVIVECDPDGN--VD----LDDLKAKAAAA-GDRLSCLMITYPSTHGVYEEG----IREICEVVHQHGGQVYM  676 (954)
T ss_pred             ---CCCEEEEeccCCCCC--cC----HHHHHHHhhcc-CCCEEEEEEEecCcCceecch----HHHHHHHHHHcCCEEEE
Confidence               244444443321221  13    78888888743 347888887666555544333    99999999999999999


Q ss_pred             cccccCccccCCCcccccc-cCCCcceeeec--cccc-----cCccccccccCHHHHHhhcCCC----------cc---c
Q 011669          294 DEVQAGFARTGSHFWGFEA-HGVVPDIVTMA--KGIG-----NGIPLGAVVTTPEIAEVLTRRN----------YF---N  352 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~-~~~~pDivt~s--K~~g-----~G~pig~v~~~~~~~~~l~~~~----------~~---~  352 (480)
                      |-++. .+..+     +.. -+...|+++++  |.++     ||.-+|.+..++++...+.+..          .+   .
T Consensus       677 DgA~~-~a~~~-----l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~  750 (954)
T PRK12566        677 DGANL-NAQVG-----LARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSA  750 (954)
T ss_pred             EeeCh-hhccC-----CCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceee
Confidence            99985 22111     221 23457888776  9886     3455777777876665554311          01   1


Q ss_pred             cCCCcHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHhHHhcCceeeEeccce-e--EEEEEecCCCcCCCC
Q 011669          353 TFGGNPVCTAAGHAVLKVIQKDKLQNNA----HVVGSYLKERLTALKDKYGIIGDVRGRGF-L--LGVEFVTDRQLKTPA  425 (480)
Q Consensus       353 t~~~~~~~~aaa~a~L~~i~~~~~~~~~----~~~~~~l~~~L~~l~~~~~~~~~v~g~g~-~--~~i~~~~~~~~~~~~  425 (480)
                      ...++.+...+++.-++.+-.+ + .+.    ..+..|++++|.+   .++.... ...+. +  +.+.+..-+.   ..
T Consensus       751 ~~~gsa~~l~~A~~Yi~~lG~e-L-k~aa~~ailnAnYla~rL~~---~~~v~~~-~~~~~~~hEfii~~~~l~~---~~  821 (954)
T PRK12566        751 APWGSASILPISWMYIAMMGPQ-L-ADASEVAILSANYLANQLGG---AFPVLYR-GRNERVAHECILDLRPLKA---QT  821 (954)
T ss_pred             cccchHHHHHHHHHHHHHHCHH-H-HHHHHHHHHHHHHHHHHhHh---hCCCCcC-CCCCCeeeEEEEEcccccc---cc
Confidence            1223333334444444444334 3 222    3466677777765   2333321 11122 1  2233221110   01


Q ss_pred             HHHHHHHHHHHHHcCceeeccC-cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          426 KAETLYIMDKMKEMGVLVGKGG-FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       426 ~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ......+.+.|.+.|+...... +..+.+||+|.-..|++|||+++++|..+.++
T Consensus       822 g~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e  876 (954)
T PRK12566        822 GISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAE  876 (954)
T ss_pred             CCCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence            1224668888999998875421 12578999999999999999999999887654

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.42  E-value=1.8e-10  Score=125.54  Aligned_cols=301  Identities=15%  Similarity=0.191  Sum_probs=185.0

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc-----CCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      ..+.++.++|++.++-+ ..-++.++|+.|..++++.+|.|.     ++..++....+-||.........          
T Consensus       530 q~i~elq~~l~eltGmd-~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~----------  598 (939)
T TIGR00461       530 ELIAQLEKWLCSITGFD-AISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMA----------  598 (939)
T ss_pred             HHHHHHHHHHHHHHCCC-CcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHC----------
Confidence            45578999999998655 356788999999988888888752     12345555567787765553333          


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                        |+..+.+|....+.  -|    +++|++.++.. .+++++|++...++. |.+.++   +++|.++|+++|+++++|-
T Consensus       599 --G~~Vv~V~~d~~G~--iD----le~L~~~i~~~-~~~taaV~iT~pst~-G~~e~~---I~eI~~iah~~G~~v~VDg  665 (939)
T TIGR00461       599 --GMQVVPVNCDQDGN--ID----LVDLKNKAEQH-GDELAAVMVTYPSTH-GVFEPT---IQHACDIVHSFGGQVYLDG  665 (939)
T ss_pred             --CCEEEEeccCCCCC--cC----HHHHHHHHhhc-CCceEEEEEEeCCcC-ceeccc---HHHHHHHHHHcCCEEEEEe
Confidence              33333333211111  23    68888888743 247888888766554 555422   8999999999999999999


Q ss_pred             cccCccccCCCcccccc-cCCCcceeeec--cccc-----cCccccccccCHHHHHhhcCCCcc----------------
Q 011669          296 VQAGFARTGSHFWGFEA-HGVVPDIVTMA--KGIG-----NGIPLGAVVTTPEIAEVLTRRNYF----------------  351 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~-~~~~pDivt~s--K~~g-----~G~pig~v~~~~~~~~~l~~~~~~----------------  351 (480)
                      +|.. +-.+     ... -....|+++++  |+|+     ||-.+|.+.+++++...+......                
T Consensus       666 Aq~~-al~~-----l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s  739 (939)
T TIGR00461       666 ANMN-AQVG-----LTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVS  739 (939)
T ss_pred             cChh-hCCC-----CCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCcccccccc
Confidence            9853 1111     111 23457898875  9887     567789999998766555422110                


Q ss_pred             ccCCCcHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHhHHhcCceeeEecccee---EEEEEecCCCcCCCC
Q 011669          352 NTFGGNPVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL---LGVEFVTDRQLKTPA  425 (480)
Q Consensus       352 ~t~~~~~~~~aaa~a~L~~i~~~~~~---~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~---~~i~~~~~~~~~~~~  425 (480)
                      +.+.++.+....++..|..+-.+.+.   +..-.+..|+.++|.+.   ++.+... ..+.+   +.+++...   +...
T Consensus       740 ~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~---~~~l~~~-~~~~~~hEfv~~~~~~---~~~~  812 (939)
T TIGR00461       740 AAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH---YPILFVG-TLKHVAHECILDLRPL---KAKT  812 (939)
T ss_pred             ccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc---CcccccC-CCCceeEEEEEeccch---hhhc
Confidence            11334445555566666666555543   33444667888887662   3322211 11121   22232110   0001


Q ss_pred             HHHHHHHHHHHHHcCceeeccC-cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          426 KAETLYIMDKMKEMGVLVGKGG-FYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       426 ~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .....++.+.|.+.|+...... +-.+.+-|.|.-..|++|||++++++.++-+
T Consensus       813 g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~  866 (939)
T TIGR00461       813 GIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKE  866 (939)
T ss_pred             CCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence            1236789999999999865432 1124666777788999999999999976644

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PLN02263 serine decarboxylase

Probab=99.42  E-value=3.2e-10  Score=115.52  Aligned_cols=288  Identities=18%  Similarity=0.084  Sum_probs=173.9

Q ss_pred             hHHHHHHHHHHHhCCCCCC--EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC
Q 011669          141 HAIADFAEALASKMPGNLK--VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~--~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g  218 (480)
                      ....++.++++++++.+.+  .-++|+||||||..||.+||.+.++ .+++..-.-|-...-+..+.+-          +
T Consensus       133 ~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~-~vvy~S~~aH~Sv~KAa~llgi----------~  201 (470)
T PLN02263        133 QFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRM----------E  201 (470)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCC-cEEEEcCCccHHHHHHHHhcCC----------c
Confidence            4456777888888865432  3589999999999999999986443 3455544555444433333221          2


Q ss_pred             eeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC-----EEEE
Q 011669          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG-----LCIA  293 (480)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi-----llI~  293 (480)
                      +..++...  .  +.-|    .++|++.|++.. ..+.+|++.--..+.|.+-|    +++|.++|++||+     +|++
T Consensus       202 ~~~Vp~d~--~--g~mD----~~aL~~aI~~d~-~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHV  268 (470)
T PLN02263        202 CVKVDTLV--S--GEID----CADFKAKLLANK-DKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHC  268 (470)
T ss_pred             ceEeccCC--C--CcCc----HHHHHHHHHhCC-CCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEE
Confidence            23333221  1  1123    678888886532 24566666655556788877    9999999999997     9999


Q ss_pred             cccccCcccc---CCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCCCc-----cccCCCc--HHHH
Q 011669          294 DEVQAGFART---GSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNY-----FNTFGGN--PVCT  361 (480)
Q Consensus       294 DEv~tgfgr~---G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~~~-----~~t~~~~--~~~~  361 (480)
                      |-++.|+-..   ..+.+.+   ....|.++++  |.++..++.|.++.+.+..+.+.....     -.|..++  ....
T Consensus       269 DAA~GG~~lPf~~~~~~~df---~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~a  345 (470)
T PLN02263        269 DGALFGLMMPFVKRAPKVTF---KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP  345 (470)
T ss_pred             eccchhhHhhhcccccccCC---CcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHH
Confidence            9999886320   0011111   1236777766  988888999999999776554432210     1233222  2234


Q ss_pred             HHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH
Q 011669          362 AAGHAVLKVIQKDKLQNNA---HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE  438 (480)
Q Consensus       362 aaa~a~L~~i~~~~~~~~~---~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~  438 (480)
                      +..+++|+.+-.+++.+.+   .++.+++.++|++.    +...-.....+.+.+.  .      |..        .+..
T Consensus       346 l~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~----g~~~~~~p~s~~V~f~--~------p~~--------~~~~  405 (470)
T PLN02263        346 IFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA----GISAMLNELSSTVVFE--R------PKD--------EEFV  405 (470)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEeCCCceEEEEe--c------Cch--------HHhh
Confidence            5566777766666555444   44556666666654    3322233333333332  1      111        1134


Q ss_pred             cCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          439 MGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       439 ~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +|..+...   ++.++|.....++++.+|++++.|++..+
T Consensus       406 ~gW~L~~~---~~~~Hivvmphv~~~~id~fi~DL~~~~~  442 (470)
T PLN02263        406 RRWQLACQ---GNIAHVVVMPSVTIEKLDYFLKELVEKRS  442 (470)
T ss_pred             cceEEccC---CCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence            67766653   35577776666789999999999987654

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.42  E-value=4e-11  Score=121.00  Aligned_cols=306  Identities=20%  Similarity=0.208  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccc
Q 011669          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (480)
Q Consensus       118 p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~  197 (480)
                      .+..+++.+.++..+.+.   ..+...+|.++++++++  .+.++.++|||.|+.+|++.. ...++++||+..-+|.+.
T Consensus         5 ~e~~~~v~~~l~s~~~~~---~g~~~~~fE~~~a~~~g--~~~~~~~~sgt~Al~~al~~l-~~~~gdeVi~p~~t~~~~   78 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWLST---YGPYVEEFEKEFAEYFG--VKYAVAVSSGTSALHLALRAL-GLGPGDEVIVPAYTFPAT   78 (363)
T ss_dssp             HHHHHHHHHHHHHTCCSS---SSHHHHHHHHHHHHHHT--SSEEEEESSHHHHHHHHHHHT-TGGTTSEEEEESSS-THH
T ss_pred             HHHHHHHHHHHHhCCccC---CCHHHHHHHHHHHHHhC--CCeEEEeCChhHHHHHHHHhc-CCCcCceEecCCCcchHH
Confidence            456677777776653221   15788999999999995  578999999999999999974 445788999998888766


Q ss_pred             cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChH
Q 011669          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  277 (480)
                      ....+.....+             +.++. -...+.-|    .+++++.++.    ++++|++-...|..   ..    +
T Consensus        79 ~~ai~~~G~~p-------------v~~Di-~~~~~~id----~~~~~~~i~~----~t~ai~~~h~~G~~---~d----~  129 (363)
T PF01041_consen   79 ASAILWAGAEP-------------VFVDI-DPETLNID----PEALEKAITP----KTKAILVVHLFGNP---AD----M  129 (363)
T ss_dssp             HHHHHHTT-EE-------------EEE-B-ETTTSSB-----HHHHHHHHHT----TEEEEEEE-GGGB----------H
T ss_pred             HHHHHHhccEE-------------EEEec-cCCcCCcC----HHHHHHHhcc----CccEEEEecCCCCc---cc----H
Confidence            65555543322             21111 01122233    6788988873    67888887776532   23    8


Q ss_pred             HHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec----cccccCccccccccC-HHHHHhhcCC---C
Q 011669          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRR---N  349 (480)
Q Consensus       278 ~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~---~  349 (480)
                      ++|.++|++||+++|.|-+|+ +|-.    +.-...|-.-|+.+||    |.+..|- -|+|+++ +++.+.+...   .
T Consensus       130 ~~i~~~~~~~~i~lIeD~a~a-~g~~----~~g~~~G~~gd~~~fSf~~~K~i~~ge-GG~v~~~~~~~~~~~~~~~~~g  203 (363)
T PF01041_consen  130 DAIRAIARKHGIPLIEDAAQA-FGAR----YKGRPVGSFGDIAIFSFHPTKIITTGE-GGAVVTNDPELAERARALRNHG  203 (363)
T ss_dssp             HHHHHHHHHTT-EEEEE-TTT-TT-E----ETTEETTSSSSEEEEESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTT
T ss_pred             HHHHHHHHHcCCcEEEccccc-cCce----eCCEeccCCCCceEecCCCCCCCcCCC-CeeEEecHHHHHHHhhhhhccC
Confidence            999999999999999999997 4321    1112234445888776    9987442 2667776 5565555321   1


Q ss_pred             --------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE---ecc--cee
Q 011669          350 --------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV---RGR--GFL  410 (480)
Q Consensus       350 --------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~--g~~  410 (480)
                                    .+..+..+.+..+.+++.|+.+  +...++-+++.+++++.|..+    +.+...   .+.  ..+
T Consensus       204 ~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~~y~~~L~~~----~~~~~~~~~~~~~~~~~  277 (363)
T PF01041_consen  204 RSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQRYREALAGI----PGIKPPPIPDGAERSSY  277 (363)
T ss_dssp             EETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHTTG----TTEEEEGCGTTTEEBCE
T ss_pred             cCccccccccccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcC----CCccccccccccccccc
Confidence                          1233456688888888877754  334445555556666665554    322111   111  122


Q ss_pred             EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--------C------------------CCEEEEeCCCCCCHH
Q 011669          411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--------Y------------------GNVFRITPPLCFTKE  464 (480)
Q Consensus       411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~------------------~~~iRi~p~~~~t~~  464 (480)
                      +.+.+.-+...  .  ...+.+.+.|.++||-+.+...        +                  ...|.+-.....+++
T Consensus       278 ~~f~i~~~~~~--~--~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~e  353 (363)
T PF01041_consen  278 YRFPIRLPDEA--L--ADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEE  353 (363)
T ss_dssp             SSEEEEETCCG--C--STHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHH
T ss_pred             ccccccccccc--c--chHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHH
Confidence            22222222110  0  1256789999999999876421        0                  023444444557899


Q ss_pred             HHHHHHHHHH
Q 011669          465 DADYLVDVMD  474 (480)
Q Consensus       465 ~id~~l~~l~  474 (480)
                      |++..+++|+
T Consensus       354 dv~~I~~~ir  363 (363)
T PF01041_consen  354 DVDYIAEAIR  363 (363)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhhccC
Confidence            9999988874

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.41  E-value=4.6e-11  Score=109.35  Aligned_cols=303  Identities=18%  Similarity=0.234  Sum_probs=186.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCe
Q 011669          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~  219 (480)
                      .+.+.++-+.|++++  +.+.+.+|++.-||-.++|....   +..+.++.++.-|-.+..+.-..+.            
T Consensus        60 kPpI~~F~~dlaeFl--g~D~~R~t~GARe~KfavMhal~---~~gd~vV~D~~aHYttyvAAEragl------------  122 (382)
T COG1103          60 KPPIKDFLEDLAEFL--GMDEVRVTAGAREAKFAVMHALC---KEGDWVVVDSLAHYTTYVAAERAGL------------  122 (382)
T ss_pred             CCcHHHHHHHHHHHh--CCceeeecccchhhHHHHHHHhc---cCCCEEEEcCcchHHHHHHHHhcCC------------
Confidence            567888999999999  56889999999999988876443   4566777788777665544333221            


Q ss_pred             eEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC
Q 011669          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG  299 (480)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg  299 (480)
                      ....+|..-...|..+.+.|.+-+++..+.. .+.++..++..+.++.|.+..    .+++.++|+++|++++..-+|+ 
T Consensus       123 ~v~eVp~tg~Pey~i~~e~y~~viee~~~~~-g~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-  196 (382)
T COG1103         123 NVAEVPNTGYPEYKITPEGYAEVIEEVKDEG-GDPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-  196 (382)
T ss_pred             eEEecCCCCCCceEecHHHHHHHHHHHHhcc-CCCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee-
Confidence            1112221111122235555666777766643 346888888889999998866    8999999999999999999998 


Q ss_pred             ccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCCC-----------ccccCCCcHHHHHHHH-
Q 011669          300 FARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN-----------YFNTFGGNPVCTAAGH-  365 (480)
Q Consensus       300 fgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~~-----------~~~t~~~~~~~~aaa~-  365 (480)
                      .||..     .....+.+|+++-|  |++++.-|+|.+..++|..+.+-..+           .+-|..|-|+....|. 
T Consensus       197 ~Grmp-----vs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASf  271 (382)
T COG1103         197 VGRMP-----VSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASF  271 (382)
T ss_pred             ecccc-----ccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcC
Confidence            67654     34456789998876  99997779999999999887654322           1223334454433322 


Q ss_pred             -HHHHHhhhhHHHHHHHHHHHHHHHHHHHhH--HhcCceeeEeccce-eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCc
Q 011669          366 -AVLKVIQKDKLQNNAHVVGSYLKERLTALK--DKYGIIGDVRGRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGV  441 (480)
Q Consensus       366 -a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~--~~~~~~~~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  441 (480)
                       .+.+.+  ..|.+.+ +...++.+.|+++.  .+++    .++.-. ++.++...-..-....+...-.+.+.|+++||
T Consensus       272 P~V~eRV--krWdeEv-~kaR~fv~elEkigg~~qlG----~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI  344 (382)
T COG1103         272 PHVVERV--KRWDEEV-EKARWFVAELEKIGGVKQLG----ERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGI  344 (382)
T ss_pred             HHHHHHH--HHHHHHH-HHHHHHHHHHHHhhhHHHhC----CCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCc
Confidence             222222  2233333 33456777777663  1111    111110 11222100000000000011236778899998


Q ss_pred             eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .-...|. ..++.++. +..+.|+++..++++++++++
T Consensus       345 ~GI~~G~-Tk~~K~sv-yGl~~Eqve~V~~afkeI~ek  380 (382)
T COG1103         345 HGIQPGQ-TKYFKLSV-YGLSWEQVEYVVDAFKEIAEK  380 (382)
T ss_pred             cccccCc-eeEEEEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence            7433222 34566663 578999999999999998864

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.38  E-value=5.9e-11  Score=121.70  Aligned_cols=164  Identities=20%  Similarity=0.221  Sum_probs=108.4

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      ..+.++...+++++|++..+.  +..++++||++|+.+++....  .++++||+....|.+........         ..
T Consensus        64 ~r~~~pt~~~le~~la~l~g~--~~~v~fsSG~~Ai~~al~~ll--~~Gd~VI~~~~~y~~t~~~~~~~---------l~  130 (437)
T PRK05613         64 SRLTNPTVEALENRIASLEGG--VHAVAFASGQAAETAAILNLA--GAGDHIVTSPRLYGGTETLFLVT---------LN  130 (437)
T ss_pred             eCccChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHhc--CCCCEEEECCCccHHHHHHHHHH---------HH
Confidence            445688899999999999864  567788999999998887543  35678888877776542211110         01


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      ..|+....++++      .|    .+++++.++    +++++|++|...++.|.+.+    +++|.++|+++|+++|+|.
T Consensus       131 ~~Gi~v~~vd~~------~d----~e~l~~~l~----~~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~  192 (437)
T PRK05613        131 RLGIEVTFVENP------DD----PESWQAAVQ----PNTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDN  192 (437)
T ss_pred             hcCeEEEEECCC------CC----HHHHHHhCC----ccCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEEC
Confidence            124443333211      12    467777775    35788889887777777777    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCcceeee--cccccc-Ccccccccc
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGN-GIPLGAVVT  337 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g~-G~pig~v~~  337 (480)
                      ++. .+.    .  +.......|++++  .|.++| |--+|.+++
T Consensus       193 t~a-~g~----~--~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv  230 (437)
T PRK05613        193 TIA-TAA----L--VRPLELGADVVVASLTKFYTGNGSGLGGVLI  230 (437)
T ss_pred             CCc-ccc----c--cChHHhCCCEEEeeccceecCCCcceeEEEE
Confidence            985 221    1  1111223577755  498886 544454443

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.38  E-value=2e-10  Score=117.95  Aligned_cols=333  Identities=16%  Similarity=0.169  Sum_probs=178.8

Q ss_pred             EEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc---c-cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHH
Q 011669           93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS---T-VLYLNHAIADFAEALASKMPGNLKVVFFTNSGT  168 (480)
Q Consensus        93 l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~---~-~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGs  168 (480)
                      ++...|..|.+-.+. +     .-+++|.+|+.+.+......   . ..........+++.|+++++.  +..++++||+
T Consensus        76 vinatg~v~~tNlg~-s-----~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga--e~alvv~sg~  147 (454)
T TIGR00474        76 VINATGVVLHTNLGR-A-----PLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA--EDALVVNNNA  147 (454)
T ss_pred             eeCCCCcEEeccCCC-C-----CCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC--CcEEEECCHH
Confidence            344556555554322 1     34699999999988754210   0 001124457888999999864  3467889999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcc--cccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYH--GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yh--G~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      .|+.+++..   ..++++||+.++.+.  |.+.....         .....|+....++..-.    .+    .++++++
T Consensus       148 aAi~l~l~~---l~~GdeVIvs~~e~v~~ggs~~i~~---------~~~~~G~~~~~v~~~~~----~~----l~dle~a  207 (454)
T TIGR00474       148 AAVLLALNT---LAKGKEVIVSRGELVEIGGSFRIPD---------VMEQSGAKLVEVGTTNR----TH----LKDYEDA  207 (454)
T ss_pred             HHHHHHHHH---hCCcCEEEECCChhhhhcchhhHHH---------HHHHcCCEEEEeCCCCC----CC----HHHHHHh
Confidence            999888853   236778888776641  21111000         00112444433321100    12    5677777


Q ss_pred             HHccCCCceEEEEEcccCCC--Cc--ceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC-----CCcccccccCCCc
Q 011669          247 IDFGTSGHVAGFLSESIQGV--GG--IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-----SHFWGFEAHGVVP  317 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~--~G--~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G-----~~~~~~~~~~~~p  317 (480)
                      ++    +++++|+++...+.  .|  .+.+    +++|.++|++||+++|+|....-++..+     ......+......
T Consensus       208 I~----~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~Ga  279 (454)
T TIGR00474       208 IT----ENTALLLKVHTSNYRIVGFTEEVS----IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGV  279 (454)
T ss_pred             cC----cCCEEEEEEccCcccccCCCCCCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCC
Confidence            74    36788777776543  35  2445    9999999999999999996421111111     0111112223457


Q ss_pred             ceeeec--cccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-h-HH------------HHHHH
Q 011669          318 DIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-D-KL------------QNNAH  381 (480)
Q Consensus       318 Divt~s--K~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~-~~------------~~~~~  381 (480)
                      |++++|  |.++|. ..|++++++++++.+......-.+...-+..++..++|...-. + .+            .++..
T Consensus       280 Div~fSg~K~LgGp-~~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~  358 (454)
T TIGR00474       280 DLVTFSGDKLLGGP-QAGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELR  358 (454)
T ss_pred             CEEEecCccccCCC-eEEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHH
Confidence            999998  999765 3688999998887665422211122222333344444433211 1 11            12444


Q ss_pred             HHHHHHHHHHHHhHH-hc--Cceee--Eecccee-------EEEEEecCCCcCCCCHHHHHHHHHHHHHcC--ceeeccC
Q 011669          382 VVGSYLKERLTALKD-KY--GIIGD--VRGRGFL-------LGVEFVTDRQLKTPAKAETLYIMDKMKEMG--VLVGKGG  447 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~-~~--~~~~~--v~g~g~~-------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G--v~v~~~~  447 (480)
                      +....+.+.|++... .+  .++..  .-|.|.|       +.+.+...       ......+.+.|++..  |+.+   
T Consensus       359 ~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~-------~~~~~~l~~~lr~~~~~ii~r---  428 (454)
T TIGR00474       359 ARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPD-------GLSAEKLEARLRELPPPIIGR---  428 (454)
T ss_pred             HHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecC-------CCCHHHHHHHHhcCCCCEEEE---
Confidence            455555555555311 00  01110  1122222       23333211       112466777777654  4443   


Q ss_pred             cCCCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          448 FYGNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       448 ~~~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                      ...+.+.+-+- +..++|++.++++|
T Consensus       429 ~~~~~~~ld~r-~~~~~~~~~~~~~~  453 (454)
T TIGR00474       429 IEDDRFLLDLR-TLLEDEEELLIEAL  453 (454)
T ss_pred             EECCEEEEEeC-cCCHHHHHHHHHHh
Confidence            22456666643 67888988888776

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.37  E-value=9.5e-11  Score=118.21  Aligned_cols=284  Identities=19%  Similarity=0.167  Sum_probs=165.0

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      +.++.++...+|.++++++.+.  +.++.++||+.|+.+++....  .++++||+....|.+........         .
T Consensus        58 Y~r~~~P~~~~lE~~la~leg~--~~av~~sSG~aAi~~al~all--~~GD~Vl~~~~~yg~t~~~~~~~---------~  124 (384)
T PRK06434         58 YTRWGNPTVQAFEEKYAVLENA--EHALSFSSGMGAITSAILSLI--KKGKRILSISDLYGQTFYFFNKV---------L  124 (384)
T ss_pred             eeCCCChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHh--CCCCEEEEecCccchHHHHHHHH---------H
Confidence            3455688999999999999854  567899999999999998653  36788888776664433222111         1


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      ...|+....++..       +    .+.++  ++   ++++++|++|.+.++++.+.+    +++|.++|++++  +++|
T Consensus       125 ~~~Gi~v~fvd~~-------~----~~~~~--l~---~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD  182 (384)
T PRK06434        125 KTLGIHVDYIDTD-------R----LNSLD--FD---PSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVD  182 (384)
T ss_pred             HhcCcEEEEECCC-------C----hhhee--ec---CCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEE
Confidence            1124333322210       1    01121  22   346889999999888887766    999999999998  4569


Q ss_pred             ccccCccccCCCcccccccCCCcceeeec--ccccc-C-cccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGN-G-IPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~-G-~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      .++. -...      ....+...|++++|  |.++| | .=.|.++. ++++.+.+...........+|+.++.++..|+
T Consensus       183 ~t~~-s~~~------~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~  255 (384)
T PRK06434        183 ATFA-SPYN------QNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLK  255 (384)
T ss_pred             CCCC-Cccc------CCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCC
Confidence            9963 1111      22234557888765  99975 3 33456656 45666655422111223345776666665554


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK  437 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  437 (480)
                      .+  +...++..++...+.+.|+.    +|.+..            .+|.|.|+.|++..        ...+.++.+.|.
T Consensus       256 tL--~~R~~r~~~~a~~~a~~L~~----~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~--------~~~~~~f~~~l~  321 (384)
T PRK06434        256 TL--GLRMEKHNKNGMELARFLRD----SKKISNVYYPDTEIGKKVLRGFGGMLSFELRS--------MEDVHKFIRNLE  321 (384)
T ss_pred             cH--HHHHHHHHHHHHHHHHHHHc----CCCccEEECCChHHHHHhcCCCCceEEEEECC--------HHHHHHHHHhCC
Confidence            33  23344455555555555543    444322            24668888888842        122344544443


Q ss_pred             H--cCceeec--------c---------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          438 E--MGVLVGK--------G---------------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       438 ~--~Gv~v~~--------~---------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      =  .++-.+.        .               |...+.|||+..+    |+++.+++-|+++|.
T Consensus       322 l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGl----Ed~~dLi~dl~~Al~  383 (384)
T PRK06434        322 IPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGI----EDIDDLIKDIENALS  383 (384)
T ss_pred             cceEccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHhc
Confidence            1  1211110        0               1113578998554    567777777777765

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.34  E-value=3.3e-10  Score=118.41  Aligned_cols=288  Identities=17%  Similarity=0.129  Sum_probs=156.1

Q ss_pred             EEEeCCHHHHHHHHHHHHHhhcC-----------------------CceEEEEcCCcccccccccccccCCCccccccCC
Q 011669          161 VFFTNSGTEANELAIMMARLYTG-----------------------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (480)
Q Consensus       161 v~f~~sGseA~~~Alk~ar~~~~-----------------------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~  217 (480)
                      -.|++|||+||..||..||...-                       .+.+|+....-|-...-+....+.+       ..
T Consensus       162 G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg-------~~  234 (522)
T TIGR03799       162 GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIG-------RD  234 (522)
T ss_pred             eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCC-------cc
Confidence            47899999999999999987521                       1123444444444433222222110       01


Q ss_pred             CeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      .+..++....  +  .-|    .++|++.|++.  ....+.+|+......++|.+.|    +++|.++|++||+++++|-
T Consensus       235 ~v~~vp~d~~--g--~~d----~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDp----l~eIa~i~~~~g~~lHVDa  302 (522)
T TIGR03799       235 NLIAIKTDAN--N--RID----VDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDP----LDEMADIAQELGCHFHVDA  302 (522)
T ss_pred             cEEEEEeCCC--C--cCC----HHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCC----HHHHHHHHHHcCCeEEEEc
Confidence            2333433211  1  123    56777777531  1123444444445557899988    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCC-Ccceeeec--cccccCccccccccC-HHHHHhhcCCC-c-----c-----ccCCCc-HH
Q 011669          296 VQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTT-PEIAEVLTRRN-Y-----F-----NTFGGN-PV  359 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~-~pDivt~s--K~~g~G~pig~v~~~-~~~~~~l~~~~-~-----~-----~t~~~~-~~  359 (480)
                      +|.|....- .-+.....++ ..|.++++  |.+.+.+.+|+++.+ ++..+.+.... +     .     .++.+. +.
T Consensus       303 A~gg~~~~~-~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~  381 (522)
T TIGR03799       303 AWGGATLLS-NTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPG  381 (522)
T ss_pred             hhhhHHHhC-HHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcch
Confidence            997642111 0000112344 67999887  888887888998876 45555443310 0     0     122222 22


Q ss_pred             HHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHhHHhcCceeeEe-ccceeEEEEEecCCCcC-----C-----C-
Q 011669          360 CTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLK-----T-----P-  424 (480)
Q Consensus       360 ~~aaa~a~L~~i~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~-----~-----~-  424 (480)
                      ......++|+.+..+.   +.++..++.+++.+.|++.    +.+.-+. ..-..+.+.+.......     .     . 
T Consensus       382 ~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~----~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~  457 (522)
T TIGR03799       382 MAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ----PDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKI  457 (522)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEecCCCccEEEEEEeChhhcccccccchhhhhhH
Confidence            2234567777765543   4455556666666666543    3222221 11223344443221100     0     0 


Q ss_pred             ---CHHHHHHHHHHHHHcCceeeccCc-----C----CCEEEEeC-CCCCCHHHHHHHHHH
Q 011669          425 ---AKAETLYIMDKMKEMGVLVGKGGF-----Y----GNVFRITP-PLCFTKEDADYLVDV  472 (480)
Q Consensus       425 ---~~~~~~~~~~~l~~~Gv~v~~~~~-----~----~~~iRi~p-~~~~t~~~id~~l~~  472 (480)
                         .......+.+.+.+.|........     +    ..++|++. ...+|+++|+.+++.
T Consensus       458 ~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~  518 (522)
T TIGR03799       458 NELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDE  518 (522)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence               011234577777888866543211     1    13689865 345788999987764

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.32  E-value=4.6e-10  Score=107.62  Aligned_cols=174  Identities=21%  Similarity=0.236  Sum_probs=124.2

Q ss_pred             HHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccC
Q 011669          128 IKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ  207 (480)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~  207 (480)
                      ++..++...+..+|....|.++|+.+-++ .. .+.+.||..|+..|+.....  .++.||+...-| |.+...+..+  
T Consensus        49 l~~~G~iYsRi~NPT~~vlE~RiAaLEGG-~a-a~a~aSG~AA~~~ai~~la~--aGD~iVss~~LY-GGT~~lf~~t--  121 (426)
T COG2873          49 LKEPGNIYTRIMNPTTDVLEERIAALEGG-VA-ALAVASGQAAITYAILNLAG--AGDNIVSSSKLY-GGTYNLFSHT--  121 (426)
T ss_pred             CCcCCceeeeccCchHHHHHHHHHHhhcc-hh-hhhhccchHHHHHHHHHhcc--CCCeeEeecccc-CchHHHHHHH--
Confidence            44445555667799999999999998754 33 45789999999999975433  678888877777 4444444333  


Q ss_pred             CCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh
Q 011669          208 SNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (480)
Q Consensus       208 ~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  287 (480)
                            ++..|+....+..       .|    .+.+++.|+    +++++|++|.+-|+++.++.    +++|.++|++|
T Consensus       122 ------l~~~Gi~v~fvd~-------~d----~~~~~~aI~----~nTkavf~EtigNP~~~v~D----ie~ia~iAh~~  176 (426)
T COG2873         122 ------LKRLGIEVRFVDP-------DD----PENFEAAID----ENTKAVFAETIGNPGLDVLD----IEAIAEIAHRH  176 (426)
T ss_pred             ------HHhcCcEEEEeCC-------CC----HHHHHHHhC----cccceEEEEeccCCCccccC----HHHHHHHHHHc
Confidence                  2223544332211       12    578888886    48999999999999998877    99999999999


Q ss_pred             CCEEEEcccccCccccCCCcccccccCCCccee--eecccccc-CccccccccCHH
Q 011669          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVTTPE  340 (480)
Q Consensus       288 gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pig~v~~~~~  340 (480)
                      |+++|+|...+.       .|-+...+...|||  +.+|.+|| |--||.+++...
T Consensus       177 gvpliVDNT~at-------pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G  225 (426)
T COG2873         177 GVPLIVDNTFAT-------PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGG  225 (426)
T ss_pred             CCcEEEecCCCc-------ceecchhhcCCCEEEEeecccccCCccccceEEEeCC
Confidence            999999997652       22233334456777  67899996 888888776543

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.31  E-value=1.2e-09  Score=104.91  Aligned_cols=313  Identities=15%  Similarity=0.135  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHHhccccccccC-----ChHHHHHHHHHHHh--CCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEE
Q 011669          118 PYVVDSIVNQIKRIQHSTVLYL-----NHAIADFAEALASK--MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL  190 (480)
Q Consensus       118 p~v~~A~~~~~~~~~~~~~~~~-----~~~~~~l~e~L~~~--~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~  190 (480)
                      ..+++-...-+...+-+...|.     .-.+...|+-|.++  .|.+.+.|++|.+.|.|+...|++.... .++.|++.
T Consensus        89 ~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~-~~~GvliP  167 (475)
T KOG0258|consen   89 TDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAG-KKTGVLIP  167 (475)
T ss_pred             HHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcC-CCCceEee
Confidence            4455555555555432222332     33445555555555  3566789999999999999999987653 67789999


Q ss_pred             cCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcce
Q 011669          191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (480)
Q Consensus       191 ~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  270 (480)
                      -+-|.-++... ++.            |...+++=......|+.|.+.+...++++.+.  -+..++|+++|-|++| .+
T Consensus       168 iPQYPLYsAti-~l~------------~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~--i~~r~lvvINPGNPTG-qv  231 (475)
T KOG0258|consen  168 IPQYPLYSATI-SLL------------GGTQVPYYLDEESNWSLDVAELERSVDEARKG--INPRALVVINPGNPTG-QV  231 (475)
T ss_pred             cCCCchhHHHH-HHh------------CCcccceeeccccCCCCCHHHHHHHHHHHhcc--CCceEEEEECCCCccc-hh
Confidence            99886554332 222            12222222233456777744433334444422  2356788899887655 44


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEcccccCccc-cCCCcccccc----cC-CCcce---e---eecccccc--Cccccccc
Q 011669          271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR-TGSHFWGFEA----HG-VVPDI---V---TMAKGIGN--GIPLGAVV  336 (480)
Q Consensus       271 ~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr-~G~~~~~~~~----~~-~~pDi---v---t~sK~~g~--G~pig~v~  336 (480)
                       .+++-+++|...|.++|++|+.||||..--+ .+++++++..    .+ -.+|-   +   +.||++.+  |.|-|++=
T Consensus       232 -ls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmE  310 (475)
T KOG0258|consen  232 -LSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYME  310 (475)
T ss_pred             -hcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeee
Confidence             4889999999999999999999999876433 3445665531    12 23432   2   45899874  78888754


Q ss_pred             ---cCHHHHHhhcCCCccccCCCcHHHHHHHHH----------HHH--HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669          337 ---TTPEIAEVLTRRNYFNTFGGNPVCTAAGHA----------VLK--VIQKDKLQNNAHVVGSYLKERLTALKDKYGII  401 (480)
Q Consensus       337 ---~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a----------~L~--~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~  401 (480)
                         .++++.+.+.+... ...+.+-.+++..-.          ..+  .-+.+.+.+.++...+.+.+.++.+    +.+
T Consensus       311 v~n~~prv~~qi~Kl~s-i~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~----~gi  385 (475)
T KOG0258|consen  311 SLNRDPRVKQQIKKLAS-IKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSL----EGI  385 (475)
T ss_pred             cccCChhHHHHHHHHHh-hhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhc----Cce
Confidence               23455444332100 000000001110000          000  0123445555555555555555544    667


Q ss_pred             eeEeccceeEEEEEecCCC---------cCCCCHHHHHHHHHHHHHcCceeeccCcCCC-----EEEEe
Q 011669          402 GDVRGRGFLLGVEFVTDRQ---------LKTPAKAETLYIMDKMKEMGVLVGKGGFYGN-----VFRIT  456 (480)
Q Consensus       402 ~~v~g~g~~~~i~~~~~~~---------~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~-----~iRi~  456 (480)
                      ..-+..|.|+.+.-..-+.         ...|+   .--..+.|..-||.+.||..|++     ++|.+
T Consensus       386 ~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD---~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~T  451 (475)
T KOG0258|consen  386 SCNPVQGAMYLFPQISLPPKAIEAAKALGIAPD---EFYCLKLLEATGICVVPGSGFGQKEGTYHFRTT  451 (475)
T ss_pred             eeccCccceeecccccCCHHHHHHHHHhCCCCc---HHHHHHHHHhcCeEEecCCCCCCCCceeEEEEe
Confidence            7788889998765432110         01111   11233445567999999866552     57765

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.28  E-value=6.9e-10  Score=111.28  Aligned_cols=316  Identities=16%  Similarity=0.122  Sum_probs=175.6

Q ss_pred             CHH-HHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCC--CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669          117 HPY-VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (480)
Q Consensus       117 ~p~-v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~--~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~  193 (480)
                      +|. .++|+.+++-...|.+..+ .....+..+.|.+++..  +.+.++++.|||.++|+++..... .+++++++. + 
T Consensus        15 ~~~~~~~~~~~~~~~~~HRs~~F-~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~-~~g~~vLv~-g-   90 (374)
T TIGR01365        15 RPGWSIEELKNAPLGRSHRSKLG-KEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG-CRGVDVLAW-E-   90 (374)
T ss_pred             CchhhHHHHhhhhcccCcCCHHH-HHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC-CCCCeEEEE-C-
Confidence            466 6666666554444544332 35566777888888763  345677799999999999986542 145567763 3 


Q ss_pred             ccccccc-cccc-ccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCccee
Q 011669          194 YHGNAAG-TMGA-TAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (480)
Q Consensus       194 yhG~~~~-~~~~-~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~  271 (480)
                      +.|.... -+.- .+.+         .+..+.  .++....  +    .++++.      ...+.   +-..-.++|+..
T Consensus        91 ~FG~r~~~eia~~~g~~---------~v~~l~--~~~g~~~--~----~~~ve~------~~~v~---~vhnETSTGv~n  144 (374)
T TIGR01365        91 SFGKGWVTDVTKQLKLP---------DVRVLE--AEYGKLP--D----LKKVDF------KNDVV---FTWNGTTSGVRV  144 (374)
T ss_pred             HHHHHHHHHHHHhcCCC---------CcEEEc--CCCCCCC--C----HHHcCC------CCCEE---EecCCCchheec
Confidence            4454422 1111 1100         011221  1122111  1    344431      12333   333334567766


Q ss_pred             CCCChHHHHHHHHHH-hCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCC
Q 011669          272 LAPGYLPAVYKSIKK-AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRR  348 (480)
Q Consensus       272 ~~~~~l~~l~~l~~~-~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~  348 (480)
                      +    +++   ++++ +++++|+|-|-+ ||  + ..+.++  +  .|++..|  |+|++--.++.++.+++.++.....
T Consensus       145 p----v~~---i~~~~~~~lliVDavSs-~g--~-~~l~~d--~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~  209 (374)
T TIGR01365       145 P----NGD---FIPADREGLTICDATSA-AF--A-QDLDYH--K--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESY  209 (374)
T ss_pred             c----ccc---cccccCCCcEEEEccch-hc--C-CCCChh--H--CcEEEEechhccCCCCceEEEEECHHHHHHHhhc
Confidence            5    443   3333 589999999865 54  2 222233  3  6776554  9999544568889998877654421


Q ss_pred             -------C---------------ccccCCCc-HHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669          349 -------N---------------YFNTFGGN-PVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGII  401 (480)
Q Consensus       349 -------~---------------~~~t~~~~-~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~  401 (480)
                             .               ...|...+ ..+..+...+|+.+.++    +..++.+++.+.+++.++++-- +...
T Consensus       210 ~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~-l~~~  288 (374)
T TIGR01365       210 TPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNW-IHFL  288 (374)
T ss_pred             CCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCC-cccC
Confidence                   0               02233333 34555556667666553    3455566667777777776520 1111


Q ss_pred             e---eEeccceeEEEEEecCCC---cCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          402 G---DVRGRGFLLGVEFVTDRQ---LKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       402 ~---~v~g~g~~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                      .   ..+.. ....+.+..+..   ...|.-.....+.+.|+++|+.+.+|..  .++.+||...-.++.+||+.+++.|
T Consensus       289 ~~~~~~rS~-tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l  367 (374)
T TIGR01365       289 AETPEIRSN-TSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWL  367 (374)
T ss_pred             CCChhhcCC-CeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHH
Confidence            1   12221 223343311100   0001111146788899999999887632  2478999988889999999999999


Q ss_pred             HHHHhh
Q 011669          474 DYSLSK  479 (480)
Q Consensus       474 ~~~l~~  479 (480)
                      +-+.+.
T Consensus       368 ~~~~~~  373 (374)
T TIGR01365       368 DWAFAL  373 (374)
T ss_pred             HHHHhc
Confidence            977654

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PLN02452 phosphoserine transaminase

Probab=99.26  E-value=2.1e-09  Score=107.77  Aligned_cols=325  Identities=11%  Similarity=0.043  Sum_probs=192.1

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHh----------ccccccccCChHHHHHHHHHHHhCCC--CCCEEEEeCCHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKR----------IQHSTVLYLNHAIADFAEALASKMPG--NLKVVFFTNSGT  168 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~----------~~~~~~~~~~~~~~~l~e~L~~~~~~--~~~~v~f~~sGs  168 (480)
                      .+-|..|-..     -+++|.+++.+.+-+          ..|....| .....+..+.|.+++..  +.+.+++..|||
T Consensus         8 ~~~f~pGP~~-----lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f-~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt   81 (365)
T PLN02452          8 VFNFSAGPAT-----LPANVLAKAQAELYNWEGSGMSVMEMSHRGKEF-LSIIQKAEADLRELLDIPDNYEVLFLQGGAS   81 (365)
T ss_pred             eEeeeCCCCC-----CCHHHHHHHHHHHhcccccCccccccCCCchHH-HHHHHHHHHHHHHHhCCCCCceEEEEeCccH
Confidence            4456666443     379999999887643          23433322 35667778888888753  445667778999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      .++++++.....  +++++++...++.|....-....-...        .+........+....  +    .+++    +
T Consensus        82 ~~~ea~~~nl~~--~~~~~l~~~~G~fg~r~~~~a~~~g~~--------~~~~~~~~~~~~~~~--~----~~~~----~  141 (365)
T PLN02452         82 TQFAAIPLNLCK--PGDKADFVVTGSWSKKAAKEAKKYCKT--------NVIASGKDEKYTKIP--S----VSEW----E  141 (365)
T ss_pred             HHHHHHHHhcCC--CCCeEEEEECCHHHHHHHHHHHHhCCC--------cEEEecCCCCCCCCC--C----hHHc----C
Confidence            999999986543  456777777777675554433221000        011100001010000  1    2222    2


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeecccccc
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN  328 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~  328 (480)
                      .  +.++..|.+-.....+|+...+   ++++.      ++++|+|-+++ +|  + .....+.+++  |+.+--|.+| 
T Consensus       142 ~--~~~~~~v~~~hnETstGv~~~~---~~~i~------~~~lvVDa~Ss-~g--~-~pidv~~~~v--~~~saqK~lG-  203 (365)
T PLN02452        142 L--TPDAKFVHICANETIHGVEFKD---YPDVG------NVPLVADMSSN-FL--S-KPVDVSKYGV--IYAGAQKNVG-  203 (365)
T ss_pred             C--CCCCcEEEECCCCCCCcEecCc---ccccC------CCeEEEECCcc-cc--C-cccCHHHcCE--EEEecccccC-
Confidence            1  2356677776666677774222   33332      38999999997 43  1 2333444554  6666779996 


Q ss_pred             CccccccccCHHHHHhhcCCC-----------ccccCC-CcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHH
Q 011669          329 GIPLGAVVTTPEIAEVLTRRN-----------YFNTFG-GNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       329 G~pig~v~~~~~~~~~l~~~~-----------~~~t~~-~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~  392 (480)
                      .-.+|.+++++++++.+....           ...+++ .|..+..+..++|+.+.++    .+.++.+++.+++++.|+
T Consensus       204 P~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~  283 (365)
T PLN02452        204 PSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAID  283 (365)
T ss_pred             CCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence            223688999999887654321           123343 3455666677889988764    455666777777777776


Q ss_pred             HhHHhcCceeeEeccce-eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-CCCEEEEeCCCCCCHHHHHHHH
Q 011669          393 ALKDKYGIIGDVRGRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-YGNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       393 ~l~~~~~~~~~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~p~~~~t~~~id~~l  470 (480)
                      +...-+....+..-+.. .+.+.+        +.......+.+.++++|++..+|-. .++ +|++.=-.++.++++.++
T Consensus       284 ~~~G~y~~~~~~~~rs~~~vsF~~--------~~~~~~~~f~~~~~~~g~~~~~G~r~~gg-~R~s~yna~~~~~v~~L~  354 (365)
T PLN02452        284 ESNGFYVCPVEKSVRSLMNVPFTL--------GGSELEAEFVKEAAKAGMVQLKGHRSVGG-MRASIYNAMPLAGVEKLV  354 (365)
T ss_pred             hCCCcccCCCChHHhCCeEEEEEc--------CCchhHHHHHHHHHHCCCcccCCccccCc-eEEECcCCCCHHHHHHHH
Confidence            64110111111011122 223332        1122567899999999999988732 234 999987789999999999


Q ss_pred             HHHHHHHh
Q 011669          471 DVMDYSLS  478 (480)
Q Consensus       471 ~~l~~~l~  478 (480)
                      +.+++.-+
T Consensus       355 ~~m~~f~~  362 (365)
T PLN02452        355 AFMKDFQA  362 (365)
T ss_pred             HHHHHHHH
Confidence            99998754

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.26  E-value=7.2e-10  Score=107.30  Aligned_cols=303  Identities=16%  Similarity=0.133  Sum_probs=170.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHH-HHHHHHHhhc-----------CCceEEEEcCCccccccccccccc
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANE-LAIMMARLYT-----------GCNDIISLRNAYHGNAAGTMGATA  206 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~-~Alk~ar~~~-----------~~~~ii~~~~~yhG~~~~~~~~~~  206 (480)
                      .-..+.++++..++.++.+.++|+...+.|--++ -.|..+..+.           ++-+.|+..|+|-.+-..+     
T Consensus        67 ~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~-----  141 (425)
T PF12897_consen   67 GLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAIT-----  141 (425)
T ss_dssp             -SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHH-----
T ss_pred             ccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHH-----
Confidence            3567788888889998888887777665554433 3333333321           1346788888884322111     


Q ss_pred             CCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHH-H
Q 011669          207 QSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKS-I  284 (480)
Q Consensus       207 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l-~  284 (480)
                              ...|++.+++|....+|   |    .+.+|+++..  ...++++++-| ..|++|.+ ++++-.++++++ +
T Consensus       142 --------E~~Giemi~VpM~~dGP---D----mD~Ve~LV~~--D~svKGiWcVP~ySNPtG~t-ySde~vrrlA~m~~  203 (425)
T PF12897_consen  142 --------EHFGIEMIPVPMTEDGP---D----MDMVEELVAE--DPSVKGIWCVPKYSNPTGIT-YSDEVVRRLAAMKT  203 (425)
T ss_dssp             --------HHCT-EEEEEEEETTEE--------HHHHHHHTHT--STTEEEEEE-SSS-TTT------HHHHHHHHHS--
T ss_pred             --------HhhCcEEEecCCCCCCC---C----HHHHHHHHhc--CCccceEEeCCCccCCCCcc-CCHHHHHHHhcCCc
Confidence                    11477777776543222   2    7888988864  35899999999 45566755 688888888888 4


Q ss_pred             HHhCCEEEEcccccCccccCC--Ccc--cc----cccCCCccee----eeccccccCccccccccCHHHHHhhcCCCccc
Q 011669          285 KKAGGLCIADEVQAGFARTGS--HFW--GF----EAHGVVPDIV----TMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN  352 (480)
Q Consensus       285 ~~~gillI~DEv~tgfgr~G~--~~~--~~----~~~~~~pDiv----t~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~  352 (480)
                      ...+..++-|.+|+---.++.  ..-  .+    ...| .||.+    +.||---.|-.++++.++++-++.+.......
T Consensus       204 AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~  282 (425)
T PF12897_consen  204 AAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAG-NPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQ  282 (425)
T ss_dssp             SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT--TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH
T ss_pred             CCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcC-CCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCc
Confidence            467999999999862111110  000  00    0111 35533    67898778888999999998887777655567


Q ss_pred             cCCCcHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh----HHhcC----ce-eeEeccceeEEEEEecCCCcC
Q 011669          353 TFGGNPVCTAAGHAVLKVIQKD-KLQNNAHVVGSYLKERLTAL----KDKYG----II-GDVRGRGFLLGVEFVTDRQLK  422 (480)
Q Consensus       353 t~~~~~~~~aaa~a~L~~i~~~-~~~~~~~~~~~~l~~~L~~l----~~~~~----~~-~~v~g~g~~~~i~~~~~~~~~  422 (480)
                      |.+.+-+.|..-..-++.  .+ ++.+++++..+.++-+++..    .++++    +. +..+..|.|+.++....    
T Consensus       283 tIgpdKvNQLRHvrff~d--~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G----  356 (425)
T PF12897_consen  283 TIGPDKVNQLRHVRFFKD--AEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG----  356 (425)
T ss_dssp             -S---HHHHHHHHHHHHS--HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT----
T ss_pred             eeCccHHHHHHHHHHhcC--hhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC----
Confidence            888888887766555542  34 67777877777666665433    23333    22 23444577888887542    


Q ss_pred             CCCHHHHHHHHHHHHHcCceeeccCc--------CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          423 TPAKAETLYIMDKMKEMGVLVGKGGF--------YGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       423 ~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                           .+.++++.+++.||.+.+.|.        ....|||+|++ -+.+|++.+++.+.-++
T Consensus       357 -----~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~-P~leel~~Am~~~~~cv  413 (425)
T PF12897_consen  357 -----TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSY-PSLEELETAMDVFATCV  413 (425)
T ss_dssp             ------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SS-S-HHHHHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCC-CCHHHHHHHHHHHHHHH
Confidence                 267899999999999988542        24689999985 48899999999887654

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.24  E-value=7.5e-09  Score=103.55  Aligned_cols=351  Identities=13%  Similarity=0.085  Sum_probs=187.6

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~  177 (480)
                      ...|||+.+-.++.   -..++..+||..  .+-    ...-++...+|.+..++++  +.+.++++.+|..|+..+.+.
T Consensus        40 ~dV~IDLrSDTgT~---apS~~m~aAM~~--GDD----~Y~gdpSv~~Lee~vael~--G~E~alpthqGRgaE~Il~~~  108 (467)
T TIGR02617        40 EDVFIDLLTDSGTG---AVTQSMQAAMMR--GDE----AYSGSRSYYALAESVKNIF--GYQYTIPTHQGRGAEQIYIPV  108 (467)
T ss_pred             CCeEEECccCCCCC---CCCHHHHHHHHc--CCc----ccccCchHHHHHHHHHHHh--CCceEEECCCCchHHHHHHHh
Confidence            34689998876653   245777777764  111    1223677889999999999  457789999999999988876


Q ss_pred             HHhhcCCceEE------EEcCCcccccc-cccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          178 ARLYTGCNDII------SLRNAYHGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       178 ar~~~~~~~ii------~~~~~yhG~~~-~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      .... +++.++      ++...||-.+. +...+++.....  .+.........+.++++.++      +++++++|+..
T Consensus       109 ~~~~-~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~--l~~~ea~~~~~~~~fkG~~d------l~~le~~I~~~  179 (467)
T TIGR02617       109 LIKK-REQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARN--VYTKEAFDTGVRYDFKGNFD------LEGLERGIEEV  179 (467)
T ss_pred             hccc-ccccccccccccccceEEEEecchHHHHHcCceeec--ccchhhcccccCCCCCCCcC------HHHHHHHHhhc
Confidence            5431 122222      11233333322 222232211000  00000000111222333332      78899999865


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc----Cc------cccCCCccccc-ccCCCcce
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA----GF------ARTGSHFWGFE-AHGVVPDI  319 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t----gf------gr~G~~~~~~~-~~~~~pDi  319 (480)
                      ..+++..+...-.+|..|..+.|.+.+++++++|++||+.++.|-+--    -|      +..|....-+- ..--..|.
T Consensus       180 g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDs  259 (467)
T TIGR02617       180 GPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADM  259 (467)
T ss_pred             CCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCE
Confidence            445677776666666655566789999999999999999999996421    01      12221100000 00123566


Q ss_pred             e--eeccccccCccccc-cccCHH----HHHhhcCC----CccccCCCcHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 011669          320 V--TMAKGIGNGIPLGA-VVTTPE----IAEVLTRR----NYFNTFGGNPVC-TAAGHAVLKVIQKDKLQNNAHVVGSYL  387 (480)
Q Consensus       320 v--t~sK~~g~G~pig~-v~~~~~----~~~~l~~~----~~~~t~~~~~~~-~aaa~a~L~~i~~~~~~~~~~~~~~~l  387 (480)
                      +  |+||+++  .|+|. ++++++    +.+.++..    ..+.||+|-.-- +.|....|+..-++++..+--...++|
T Consensus       260 vt~slsKglg--ApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl  337 (467)
T TIGR02617       260 LAMSAKKDAM--VPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYL  337 (467)
T ss_pred             EEEEcCCCCC--CcccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHH
Confidence            5  5567765  46554 445543    33333332    245677763221 222222344334455665555566777


Q ss_pred             HHHHHHhHHhcCceeeEeccceeEEEEEec----CCCcCCCCHHHHHHHHHHH-HHcCceeeccCc-------------C
Q 011669          388 KERLTALKDKYGIIGDVRGRGFLLGVEFVT----DRQLKTPAKAETLYIMDKM-KEMGVLVGKGGF-------------Y  449 (480)
Q Consensus       388 ~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~-------------~  449 (480)
                      .++|.+.  ..|++.   ..|.-+.++-..    -+....|    +..+.-.| ++-||--..-|.             .
T Consensus       338 ~~~L~~~--Gvpi~~---~Gghav~iDa~~~lphip~~~fp----a~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~  408 (467)
T TIGR02617       338 VNGLEEI--GVVCQQ---AGGHAAFVDAGKLLPHIPADQFP----AHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLP  408 (467)
T ss_pred             HHHHHhC--CCcEEe---cCccEEEEehhhhCCCCChhhCc----HHHHHHHHHHHcCcceEeecceecccCCCCCccCC
Confidence            7777664  234333   233333333211    1111122    23333333 355554321110             0


Q ss_pred             --CCEEEEeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669          450 --GNVFRITPP-LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       450 --~~~iRi~p~-~~~t~~~id~~l~~l~~~l~~  479 (480)
                        -..+|+..| -..|.+++|.+.+++..+.++
T Consensus       409 ~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~  441 (467)
T TIGR02617       409 CPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_pred             CccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence              146898877 456999999999999887653

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.22  E-value=5.6e-12  Score=122.14  Aligned_cols=202  Identities=18%  Similarity=0.147  Sum_probs=122.1

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH  195 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yh  195 (480)
                      .+|++.+++.+ +.. ++. ....++...++.+++++.++  .+.++|+.|||.||..+++....  +.+.||+-+. .|
T Consensus         7 ~~~~m~~a~~~-a~~-gd~-~Yg~D~~~~~l~~~i~~l~g--~e~a~f~~sGT~An~~al~~~~~--~~~~vi~~~~-aH   78 (290)
T PF01212_consen    7 PTPAMLEAMAA-ANV-GDD-AYGEDPTTARLEERIAELFG--KEAALFVPSGTMANQLALRAHLR--PGESVICADT-AH   78 (290)
T ss_dssp             S-HHEEHHHHH-TTS-B-C-CTTSSHHHHHHHHHHHHHHT--SSEEEEESSHHHHHHHHHHHHHH--TTEEEEEETT-EH
T ss_pred             CCHHHHHHHHc-ccc-CCc-ccCCChhHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHHh--cCCceecccc-ce
Confidence            56999999944 322 232 34457889999999999995  46778999999999999997663  5566666544 33


Q ss_pred             cccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCceEEEEEcccCCCCcceeCC
Q 011669          196 GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      -.....-....         ..|...++++....+.+      .+++|++.++...  ..++++|.+|...+..|..+++
T Consensus        79 i~~~E~ga~~~---------~~G~~~~~l~~~~~G~l------~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s  143 (290)
T PF01212_consen   79 IHFDETGAIEE---------LSGAKLIPLPSDDDGKL------TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYS  143 (290)
T ss_dssp             HHHSSTTHHHH---------HTTCEEEEEBECTGTBB-------HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---
T ss_pred             eeeeccchhhH---------hcCcEEEECCCcccCCC------CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCC
Confidence            32222211100         02444444443211222      2788888887532  2578999999887775556679


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccC--ccccCCCcccccccCCCcceeeeccccccCccccc-cccCHHHHH
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGA-VVTTPEIAE  343 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tg--fgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~-v~~~~~~~~  343 (480)
                      .+.|++|.++|++||+.++.|-+--.  ....| .  .....-...|++++|=.-++|.+.|+ +++++++++
T Consensus       144 ~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~--~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~  213 (290)
T PF01212_consen  144 LEELRAISELAREHGLPLHMDGARLANAAAALG-V--SLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKEFIA  213 (290)
T ss_dssp             HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-H--HHHHHHTTSSEEEEETTSTT-SSSEEEEEESHHHHH
T ss_pred             HHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-c--cHHHHhhhCCEEEEEEEcccccccceEEEechHHHH
Confidence            99999999999999999999965210  00001 0  01111135688876544444555564 557788544

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.21  E-value=6.8e-09  Score=103.56  Aligned_cols=290  Identities=19%  Similarity=0.138  Sum_probs=169.9

Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ...++.++....|.++++++-+  -+..+.++||..|+..++.....  .+++|+..+..|.|....+-...        
T Consensus        56 ~Y~R~~nPT~~~lE~~~a~LEg--~~~~~afsSGmaAI~~~~l~ll~--~GD~vl~~~~~YG~t~~~~~~~l--------  123 (396)
T COG0626          56 DYSRTGNPTRDALEEALAELEG--GEDAFAFSSGMAAISTALLALLK--AGDHVLLPDDLYGGTYRLFEKIL--------  123 (396)
T ss_pred             ccccCCCccHHHHHHHHHHhhC--CCcEEEecCcHHHHHHHHHHhcC--CCCEEEecCCccchHHHHHHHHH--------
Confidence            3345668999999999999984  36688999999999998775544  57899999988865433332221        


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                       ...|+....+..       .+    .+.+++.+.   ++++++|++|+.-|+.-.+..    +++|.++|+++|+++|+
T Consensus       124 -~~~gi~~~~~d~-------~~----~~~~~~~~~---~~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvV  184 (396)
T COG0626         124 -QKFGVEVTFVDP-------GD----DEALEAAIK---EPNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVV  184 (396)
T ss_pred             -HhcCeEEEEECC-------CC----hHHHHHHhc---ccCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEE
Confidence             113555443322       11    234444443   247999999998888766665    99999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCccee--eeccccccC--ccccccccCH-HHHHhhcCCCc-cccCCCcHHHHHHHHHH
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVTTP-EIAEVLTRRNY-FNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G--~pig~v~~~~-~~~~~l~~~~~-~~t~~~~~~~~aaa~a~  367 (480)
                      |.....    +   ..++......||+  +.+|-++|.  .=.|.|+++. ++.+.+..... ..-....|..+...+..
T Consensus       185 DNTfat----P---~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRG  257 (396)
T COG0626         185 DNTFAT----P---VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRG  257 (396)
T ss_pred             ECCccc----c---cccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhc
Confidence            998752    2   1123333446776  577999974  5567677665 45554421111 01112335555444444


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEecCCCcCCCCHHHH
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKAET  429 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~~  429 (480)
                      |+.+.  -..++..++...+.+.|++    +|.+..                  ..|.|.|+.|++...        ..+
T Consensus       258 lkTL~--~Rm~~~~~nA~~IA~~L~~----~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~--------~~~  323 (396)
T COG0626         258 LRTLA--LRMERHNENALKIAEFLAD----HPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE--------EAA  323 (396)
T ss_pred             cchHH--HHHHHHHHHHHHHHHHHhc----CCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh--------HHH
Confidence            43221  1233333344444444433    444432                  225788888888541        224


Q ss_pred             HHHHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          430 LYIMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       430 ~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .++.+.|+--.+...-||                         ..++.+|++..+    |+++.+++-|+++++.
T Consensus       324 ~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl----Ed~eDLi~Dl~~Al~~  394 (396)
T COG0626         324 KKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL----EDVEDLIADLEQALAK  394 (396)
T ss_pred             HHHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHHh
Confidence            445444432221111111                         124678998554    5566666666666654

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.19  E-value=1.3e-09  Score=105.36  Aligned_cols=342  Identities=18%  Similarity=0.185  Sum_probs=187.4

Q ss_pred             CCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCC-C--
Q 011669           81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG-N--  157 (480)
Q Consensus        81 ~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~-~--  157 (480)
                      +|--+.=|-|.| .|.+|+..+        .      +.|.+|=+..++.. ..-...+-....++.+.+.+++-+ +  
T Consensus        25 R~~KVNLgIGvY-~de~Gk~pv--------l------~aV~~Ae~~l~~~~-~~k~Yl~i~G~~~f~~~~~~llFG~d~~   88 (396)
T COG1448          25 RPNKVNLGIGVY-KDEDGKTPV--------L------RAVKKAEKRLLEQE-KTKNYLPIEGLPEFLEAVQKLLFGADSP   88 (396)
T ss_pred             CcCeeeeeeeee-eCCCCCcch--------h------HHHHHHHHHhhccc-cccccCCcCCcHHHHHHHHHHhcCCCcH
Confidence            344555666775 577765322        1      44555433333221 111122345667777887777533 2  


Q ss_pred             -C--C--EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          158 -L--K--VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       158 -~--~--~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                       +  +  ..+-|.|||-|+-.+-+......++..|-+.++++-.+. .....            .|.....+|......-
T Consensus        89 ~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~-~If~~------------aGl~v~~Y~Yyd~~~~  155 (396)
T COG1448          89 ALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHK-AIFEA------------AGLEVETYPYYDAETK  155 (396)
T ss_pred             HHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHH-HHHHh------------cCCceeeeeccccccc
Confidence             1  1  235678999999999987766667777888888883322 22222            2333333332111111


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Cccccc
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFE  311 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~~  311 (480)
                      .-|    .+.+-..|+.. +.....++-.+-+|++|.- ++++-|++|.++.++.|.+-++|=+|-||+.... .-++..
T Consensus       156 ~~d----f~~mla~L~~a-~~~~vvLLH~CcHNPTG~D-~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR  229 (396)
T COG1448         156 GLD----FDGMLADLKTA-PEGSVVLLHGCCHNPTGID-PTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALR  229 (396)
T ss_pred             ccc----HHHHHHHHHhC-CCCCEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHH
Confidence            112    23333333332 2234445555688888865 5888899999999999999999999999974321 111111


Q ss_pred             c-cCCCc-cee--eeccccc-cCccccccc---cCHHHHHhhcCC---CccccCCCcHHHHH-HHHHHHHH--h-----h
Q 011669          312 A-HGVVP-DIV--TMAKGIG-NGIPLGAVV---TTPEIAEVLTRR---NYFNTFGGNPVCTA-AGHAVLKV--I-----Q  372 (480)
Q Consensus       312 ~-~~~~p-Div--t~sK~~g-~G~pig~v~---~~~~~~~~l~~~---~~~~t~~~~~~~~a-aa~a~L~~--i-----~  372 (480)
                      . ....+ -++  +|||.|| =|-|+|+..   -+++..+.+...   ..-++|+.+|---+ .....|+.  +     +
T Consensus       230 ~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~  309 (396)
T COG1448         230 LFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQ  309 (396)
T ss_pred             HHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHH
Confidence            1 01122 333  6899999 588988644   234555444321   11255554443222 22222211  0     0


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCC
Q 011669          373 -KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGN  451 (480)
Q Consensus       373 -~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~  451 (480)
                       -+...+++.++++.|.+.|++......+-.-....|+|...-+            ..+++.+...+.||++...|    
T Consensus       310 El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gl------------s~~QV~rLree~~IY~v~sG----  373 (396)
T COG1448         310 ELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGL------------SPEQVDRLREEFGIYLVASG----  373 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCC------------CHHHHHHHHHhccEEEecCC----
Confidence             1234555666666666666654322222222344455432222            12445555557899998654    


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          452 VFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       452 ~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                        ||+.. ..++..|+.+.++|.++
T Consensus       374 --Ri~va-Gl~~~ni~~va~ai~~v  395 (396)
T COG1448         374 --RINVA-GLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             --eeeec-cCChhhHHHHHHHHHhh
Confidence              77754 57889999999998875

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.18  E-value=3.5e-08  Score=93.12  Aligned_cols=333  Identities=16%  Similarity=0.122  Sum_probs=196.8

Q ss_pred             EeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-cc-ccccC------ChHHHHHHHHHHHhCCCCCCEEEEeC
Q 011669           94 FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HS-TVLYL------NHAIADFAEALASKMPGNLKVVFFTN  165 (480)
Q Consensus        94 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~-~~~~~------~~~~~~l~e~L~~~~~~~~~~v~f~~  165 (480)
                      -+.+|-.|||-      ++||-.++.+.+...+...+-| +. ...+.      -..-..+..+|+-+.+....+|..++
T Consensus        27 ~lp~~viyLdg------nSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~d  100 (407)
T COG3844          27 ALPGGVIYLDG------NSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTD  100 (407)
T ss_pred             cCCCCeEEeec------cccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeC
Confidence            35677788884      4567544455554444332211 10 00011      12234566677777777777888888


Q ss_pred             CHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccc-cccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHH
Q 011669          166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT-MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ  244 (480)
Q Consensus       166 sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~-~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le  244 (480)
                      |-|--+...|-.+...+.++.||++++.....-... ..+...  ...   ...+..+           .+    .++++
T Consensus       101 tts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~--~~~---~~~~~~~-----------~~----P~~~~  160 (407)
T COG3844         101 TTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADL--LGI---GYDLEGV-----------IA----PRALE  160 (407)
T ss_pred             CcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhh--hcc---cccceee-----------eC----hHHHH
Confidence            877666666655555555667777776543221111 111000  000   0011111           01    34677


Q ss_pred             HHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--ee
Q 011669          245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TM  322 (480)
Q Consensus       245 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~  322 (480)
                      ++++    ++++.|++..+|--+|....    +.+|-.++++||++++.|=+++ -   |  -...+.++-..|+.  |-
T Consensus       161 ~~~~----dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs-a---G--avp~~Lh~~gaDfaigcs  226 (407)
T COG3844         161 EAIT----DDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS-A---G--AVPVDLHAAGADFAIGCS  226 (407)
T ss_pred             Hhhc----cceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc-c---C--CcceeecccCCCeeeeee
Confidence            7774    58999999999999998877    9999999999999999999887 2   3  12244444445544  45


Q ss_pred             ccccccCc-cccccccCHHHHHhhcCC--------------------CccccC-CC--cHHHHHHHHHHHHHhhh---hH
Q 011669          323 AKGIGNGI-PLGAVVTTPEIAEVLTRR--------------------NYFNTF-GG--NPVCTAAGHAVLKVIQK---DK  375 (480)
Q Consensus       323 sK~~g~G~-pig~v~~~~~~~~~l~~~--------------------~~~~t~-~~--~~~~~aaa~a~L~~i~~---~~  375 (480)
                      =|-+++|- -.+++.+.++..+...+.                    .+..-| .+  +-+++++...+|++..+   .+
T Consensus       227 yKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~  306 (407)
T COG3844         227 YKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITE  306 (407)
T ss_pred             ceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHH
Confidence            58888652 344455544443332221                    000011 11  23455555567776654   45


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhcCce----eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCC
Q 011669          376 LQNNAHVVGSYLKERLTALKDKYGII----GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGN  451 (480)
Q Consensus       376 ~~~~~~~~~~~l~~~L~~l~~~~~~~----~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~  451 (480)
                      +.++.-.+.+++.+.++.....+++-    ..-..+|..+.+..        |   ...++++.|.++||+.---  ..+
T Consensus       307 lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~h--------p---~~~~V~qaLi~rGVigD~R--~P~  373 (407)
T COG3844         307 LRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYH--------P---HGYQVMQALIDRGVIGDFR--EPD  373 (407)
T ss_pred             HHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEec--------C---cHHHHHHHHHHcCcccccc--CCC
Confidence            66777778888888887765544321    11222344443333        1   2577999999999986422  257


Q ss_pred             EEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Q 011669          452 VFRITP-PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       452 ~iRi~p-~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+||.| |+..+-+|+=.+++.|+++++.
T Consensus       374 vlRfgftPlY~~~~DVw~AV~~L~evL~t  402 (407)
T COG3844         374 VLRFGFTPLYVSFVDVWDAVDALEEVLDT  402 (407)
T ss_pred             eeeecCccceechhHHHHHHHHHHHHHHh
Confidence            899987 4778999999999999999875

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.17  E-value=7.3e-09  Score=102.16  Aligned_cols=194  Identities=17%  Similarity=0.081  Sum_probs=131.8

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      .+..+|....+.+.+++..+  .+.++.++||..|...|+.....  .+++|+.+...|.|.....-....         
T Consensus        72 sr~~nPt~~~le~~iaal~g--a~~~l~fsSGmaA~~~al~~L~~--~g~~iV~~~~~Y~gT~~~l~~~~~---------  138 (409)
T KOG0053|consen   72 SRSGNPTRDVLESGIAALEG--AAHALLFSSGMAAITVALLHLLP--AGDHIVATGDVYGGTLRILRKFLP---------  138 (409)
T ss_pred             ccCCCCchHHHHHHHHHHhC--CceEEEecccHHHHHHHHHHhcC--CCCcEEEeCCCcccHHHHHHHHHH---------
Confidence            34457777888888888874  35688999999999999986653  678899999999764433222111         


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE  295 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  295 (480)
                      ..|+.....          |.. ..+++++.++    .++.+|++|.+-|+...++.    +++|+++|+++|+++|+|+
T Consensus       139 ~~gie~~~v----------d~~-~~~~~~~~i~----~~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDn  199 (409)
T KOG0053|consen  139 KFGGEGDFV----------DVD-DLKKILKAIK----ENTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDN  199 (409)
T ss_pred             HhCceeeee----------chh-hHHHHHHhhc----cCceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeC
Confidence            123322211          100 0345555554    37999999999888887766    9999999999999999999


Q ss_pred             cccCccccCCCcccccccCCCcceee--eccccccC--ccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHH
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNG--IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G--~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L  368 (480)
                      ...+.       ..++......|||+  .+|-|+|.  +=.|.++.+ +++...+.......-++.+|+.+.-...-|
T Consensus       200 Tf~~p-------~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rgl  270 (409)
T KOG0053|consen  200 TFGSP-------YNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGL  270 (409)
T ss_pred             CcCcc-------cccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCc
Confidence            86543       12333344578885  66999974  666777775 777777665443344566777766555444

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.13  E-value=3.2e-08  Score=98.45  Aligned_cols=323  Identities=13%  Similarity=0.079  Sum_probs=184.6

Q ss_pred             eccCCcccccCCCCCHHHHHHHHHHHHh----------ccccccccCChHHHHHHHHHHHhCCC--CCCEEEEeCCHHHH
Q 011669          103 DAFGGIATVCCGHCHPYVVDSIVNQIKR----------IQHSTVLYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEA  170 (480)
Q Consensus       103 D~~~g~~~~~lGh~~p~v~~A~~~~~~~----------~~~~~~~~~~~~~~~l~e~L~~~~~~--~~~~v~f~~sGseA  170 (480)
                      .|..|-..     -+++|.+++.+.+.+          ..|.+..| .....+..+.|.+++..  +.+.+++..|||.+
T Consensus         7 nF~aGPa~-----lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F-~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~   80 (364)
T PRK12462          7 NFSGGPGA-----LPDTVLEQVRQAVVELPETGLSVLGMSHRSSWF-SSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQ   80 (364)
T ss_pred             eecCCCcC-----CCHHHHHHHHHHHhcccccCccccccccccHHH-HHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHH
Confidence            45555443     368999999877765          23333222 34556777777777753  45556666679999


Q ss_pred             HHHHHHHHHhhcCCceEE-EEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          171 NELAIMMARLYTGCNDII-SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii-~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      +++++.....  ++++++ +...++.|....-.+..-.          .+..+..  .....|+.-..  .+++    +.
T Consensus        81 ~ea~~~Nll~--~g~~~~~~~~tG~fg~r~~~ea~~~g----------~v~~~~~--~~~~~~~~~p~--~~~~----~~  140 (364)
T PRK12462         81 FSMIPMNFSR--PGAAAPEYVTTGYWSRKAIGEASRVA----------AMRVVWD--GAASGYRTLPS--LAEL----DW  140 (364)
T ss_pred             HHHHHHHcCC--CCCcEEEEEeCCHHHHHHHHHHHhcC----------CceEecC--cCCCCCCcCCC--HHHh----cc
Confidence            9998875543  445455 5556655544332221100          0111100  00001110000  1222    11


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g  327 (480)
                        +.+.+.|.+-.+...+|+..+         ++.+.+++++|+|-+-+ ++  + ..+.++.+    |++..|  |++|
T Consensus       141 --~~d~~~v~~t~NETstGv~~~---------~~~~~~~~llvvD~sS~-~~--s-~pid~~~~----dvi~agsQKnlg  201 (364)
T PRK12462        141 --DARAPFRHYVSNETVEGLQFP---------DAAGLPDSPLIADMSSD-FM--S-RPFDVEAY----GMVYAHAQKNLG  201 (364)
T ss_pred             --CCCCcEEEEccCCCCceEecC---------cccccCCCeEEEEcCch-hh--C-CCCChHHc----cEEEeeccccCC
Confidence              224566777666667777653         23334799999998865 42  2 22333433    676554  9998


Q ss_pred             cCccccccccCHHHHHhhcCCC-----------ccccCCCc-HHHHHHHHHHHHHhhhh--H---HHHHHHHHHHHHHHH
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRN-----------YFNTFGGN-PVCTAAGHAVLKVIQKD--K---LQNNAHVVGSYLKER  390 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~-----------~~~t~~~~-~~~~aaa~a~L~~i~~~--~---~~~~~~~~~~~l~~~  390 (480)
                       .-.++.++.+++.++......           ...+++.+ .....+...+|+.+.++  +   +.++.++..+.+++.
T Consensus       202 -P~Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~  280 (364)
T PRK12462        202 -PAGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYAT  280 (364)
T ss_pred             -CCceEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence             334578889999887654321           12455444 55667777889988766  3   445555566666666


Q ss_pred             HHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHH
Q 011669          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       391 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l  470 (480)
                      ++++..-+....+..-+..|. +.|.-      ++.....++.+.+.++|+.-..|-..-+-+|++.--.++.++++.++
T Consensus       281 id~~~~~~~~~~~~~~RS~mn-v~f~~------~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~  353 (364)
T PRK12462        281 LDALNEVIDCHAHRAARSTMN-VAFRF------RQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLC  353 (364)
T ss_pred             HHhCCCcccCCCChhhcCcce-EEEEc------CCHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHH
Confidence            666521122222223333332 22321      23345678999999999998665322234899987889999999999


Q ss_pred             HHHHHHHh
Q 011669          471 DVMDYSLS  478 (480)
Q Consensus       471 ~~l~~~l~  478 (480)
                      +-+++.-+
T Consensus       354 ~fm~~f~~  361 (364)
T PRK12462        354 AFLKDFAI  361 (364)
T ss_pred             HHHHHHHH
Confidence            99987654

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.10  E-value=7.4e-08  Score=99.09  Aligned_cols=254  Identities=18%  Similarity=0.112  Sum_probs=147.7

Q ss_pred             CCCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcC----C---
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTG----C---  184 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~----~---  184 (480)
                      +.++...+++...+.+..-....++  .....++...+++++..+ .-.-.||+||||||..|+.++|....    +   
T Consensus        73 ~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~  152 (460)
T COG0076          73 RVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESG  152 (460)
T ss_pred             CCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhccc
Confidence            4567777887777765322112222  334456667777777652 23468999999999999999987531    1   


Q ss_pred             ----ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE-EEE
Q 011669          185 ----NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA-GFL  259 (480)
Q Consensus       185 ----~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a-~vi  259 (480)
                          ...|++....|-+..-+....+-          +...++....   .+.-|    .+++++++++.   .+. +|+
T Consensus       153 ~~~~~P~ii~s~~aH~s~~Kaa~~lG~----------~~~~v~~~~~---~~~id----~~~l~~~i~~~---t~~g~vV  212 (460)
T COG0076         153 KPGGKPNIVCSETAHFSFEKAARYLGL----------GLRRVPTVPT---DYRID----VDALEEAIDEN---TIGGVVV  212 (460)
T ss_pred             ccCCCCeEEecCcchhHHHHHHHHhCC----------CceeEEeccC---ccccC----HHHHHHHHHhh---ccCceEE
Confidence                11344444555444433333321          2222221110   11123    67899888753   222 366


Q ss_pred             EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcccc-CCCccccc-ccCC-Ccceeeec--cccccCccccc
Q 011669          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART-GSHFWGFE-AHGV-VPDIVTMA--KGIGNGIPLGA  334 (480)
Q Consensus       260 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~-G~~~~~~~-~~~~-~pDivt~s--K~~g~G~pig~  334 (480)
                      ..-.....|.+-+    +++|.++|++||+++++|.++.||-.. -.+.  .. .+++ ..|.++++  |.....+++|+
T Consensus       213 ~~aGtT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~--~~~~f~l~~vdSIt~d~HK~g~aP~~~G~  286 (460)
T COG0076         213 GTAGTTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPD--GRWDFGLEGVDSITVDGHKYGLAPIGCGV  286 (460)
T ss_pred             EEecCCCCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCcc--chhhcCCCCceEEEECcccccCCCCCceE
Confidence            5555666777766    999999999999999999999987421 1010  01 1233 35667766  77777788999


Q ss_pred             cccCHH--HHHhhcCCC--------ccccCCCc--HHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHh
Q 011669          335 VVTTPE--IAEVLTRRN--------YFNTFGGN--PVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       335 v~~~~~--~~~~l~~~~--------~~~t~~~~--~~~~aaa~a~L~~i~~~~~---~~~~~~~~~~l~~~L~~l  394 (480)
                      ++.+++  +.+.+.-..        ...|..++  ....++.+++++.+-.+++   .++..++.+++.++|+++
T Consensus       287 il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~  361 (460)
T COG0076         287 VLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKL  361 (460)
T ss_pred             EEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            998865  444332111        01122222  2245556677777655544   445557777777777665

>PLN02271 serine hydroxymethyltransferase

Probab=99.07  E-value=1.4e-07  Score=97.36  Aligned_cols=283  Identities=13%  Similarity=-0.019  Sum_probs=147.6

Q ss_pred             eCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHH
Q 011669          164 TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV  243 (480)
Q Consensus       164 ~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l  243 (480)
                      .-||+.||.+++....  .++++|+..+..+-| .......+. ...+.......+..++++.... ....|    .+++
T Consensus       220 p~SGs~AN~aV~~ALl--~PGD~IL~ldl~~GG-Hlshg~~~~-~g~~vs~sG~~~~~vpY~~d~~-~g~ID----yd~l  290 (586)
T PLN02271        220 PYSCTSANFAVYTGLL--LPGDRIMGLDSPSGG-HMSHGYYTP-GGKKVSGASIFFESLPYKVNPQ-TGYID----YDKL  290 (586)
T ss_pred             eccHHHHHHHHHHHhc--CCCCEEEEecCCCCC-chhcccccc-cccccccccceEEEEEcccccc-cCccC----HHHH
Confidence            3499999999997653  478889888765433 222211000 0000000001123333322100 00112    5777


Q ss_pred             HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec
Q 011669          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA  323 (480)
Q Consensus       244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s  323 (480)
                      ++....   .+++.|++......      -.--+++++++|+++|+++++|-+|. .|.-....+  ...-...|+++++
T Consensus       291 ek~a~~---~rPKLII~g~Sayp------r~~D~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~--~sP~~~aDvvt~T  358 (586)
T PLN02271        291 EEKALD---FRPKILICGGSSYP------REWDYARFRQIADKCGAVLMCDMAHI-SGLVAAKEC--VNPFDYCDIVTST  358 (586)
T ss_pred             HHHhhh---cCCeEEEECchhcc------CcCCHHHHHHHHHHcCCEEEEECccc-ccccccCcC--CCCCcCCcEEEeC
Confidence            774432   37888988553322      22228999999999999999999996 433221111  1111146888765


Q ss_pred             --cccccCccccccccCHH--------------------HHHhhcCCCccccCCCcHHHHHHHH-HHHHHhhhh---HHH
Q 011669          324 --KGIGNGIPLGAVVTTPE--------------------IAEVLTRRNYFNTFGGNPVCTAAGH-AVLKVIQKD---KLQ  377 (480)
Q Consensus       324 --K~~g~G~pig~v~~~~~--------------------~~~~l~~~~~~~t~~~~~~~~aaa~-a~L~~i~~~---~~~  377 (480)
                        |++.|.-. |.++.+++                    +.+.+....+-+..+++.....|++ .+++.+...   ++.
T Consensus       359 THKtLrGPrG-G~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya  437 (586)
T PLN02271        359 THKSLRGPRG-GIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYM  437 (586)
T ss_pred             CcccCCCCCc-eEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHH
Confidence              99975322 55666543                    4444444333333344333333333 345544333   355


Q ss_pred             HHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------cCC
Q 011669          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------FYG  450 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~  450 (480)
                      +++.++.+.|.+.|.+.  .+.++..- -...++++++....       .....+.+.|.+-||.+....       ...
T Consensus       438 ~QVv~NAkaLA~~L~~~--G~~vv~gg-TdnHlvLvDl~~~g-------~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~p  507 (586)
T PLN02271        438 QQVKKNAQALASALLRR--KCRLVTGG-TDNHLLLWDLTTLG-------LTGKNYEKVCEMCHITLNKTAIFGDNGTISP  507 (586)
T ss_pred             HHHHHHHHHHHHHHHHC--CCeEeeCC-CCcceeeecCcccC-------CCHHHHHHHHHHcCeEeccccCCCCCCCCCC
Confidence            55666666666666553  33333211 11234555553211       113445566777788884321       112


Q ss_pred             CEEEEeCCCCC----CHHHHHHHHHHHHHHHh
Q 011669          451 NVFRITPPLCF----TKEDADYLVDVMDYSLS  478 (480)
Q Consensus       451 ~~iRi~p~~~~----t~~~id~~l~~l~~~l~  478 (480)
                      +-|||..|..+    .++|++++.+.|.++++
T Consensus       508 sGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        508 GGVRIGTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             CcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            45888766443    56888888888877764

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.04  E-value=1.1e-07  Score=105.52  Aligned_cols=302  Identities=17%  Similarity=0.158  Sum_probs=172.9

Q ss_pred             CCHHHHHHHHHHHHhccccccccC-------ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc-CCceE
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYL-------NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT-GCNDI  187 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~-------~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~-~~~~i  187 (480)
                      -++.|.+++.+..+-+.-.+ -|.       -+.+.++...++++++.+.+++-++.++|.+.++++...+... ++++|
T Consensus       117 ~P~~v~~~i~~~~~~~Tayt-PYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~V  195 (993)
T PLN02414        117 VPPVILRNILENPGWYTQYT-PYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKF  195 (993)
T ss_pred             CCHHHHHHHHhChHHHhhcC-CCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEE
Confidence            45666688877554321111 122       2335678888999998888889999999999997776544322 23567


Q ss_pred             EEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCC
Q 011669          188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG  267 (480)
Q Consensus       188 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~  267 (480)
                      ++.+..| +....++....        ...|+.....+.              ++.. ..    .+.+++++ -.+.+..
T Consensus       196 lVs~~~h-P~~~~v~~t~a--------~~~GieV~~v~~--------------~~~~-~~----~~~v~~vl-vq~P~~~  246 (993)
T PLN02414        196 LIASNCH-PQTIDVCQTRA--------DGLGLEVVVADE--------------KDFD-YS----SGDVCGVL-VQYPATD  246 (993)
T ss_pred             EEcCccC-HhHHHHHHHhh--------hhcCCEEEEecc--------------hhhc-cc----cCceEEEE-EecCCCC
Confidence            7766555 43333332111        112444443321              0100 00    22566665 3455567


Q ss_pred             cceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec-cccc-----cCccccccccCHHH
Q 011669          268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA-KGIG-----NGIPLGAVVTTPEI  341 (480)
Q Consensus       268 G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s-K~~g-----~G~pig~v~~~~~~  341 (480)
                      |.+.+    +++|.++|+++|+++|+ -++. ++-.+  .-  ..-....|+++.+ ..++     ||-..|++.+++++
T Consensus       247 G~v~d----v~~I~~~ah~~GaL~iV-aad~-lal~~--l~--~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~  316 (993)
T PLN02414        247 GEVLD----YAEFVKNAHANGVKVVM-ATDL-LALTM--LK--PPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEY  316 (993)
T ss_pred             eEEcC----HHHHHHHHHHcCCEEEE-EECH-HHhcC--CC--CHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHH
Confidence            88876    99999999999999999 3332 32222  10  1113346777543 3233     45558999999988


Q ss_pred             HHhhcCCCcc----------c--------------cCCCcHH---HHHHHHHHH--HHhhh---hHHHHHHHHHHHHHHH
Q 011669          342 AEVLTRRNYF----------N--------------TFGGNPV---CTAAGHAVL--KVIQK---DKLQNNAHVVGSYLKE  389 (480)
Q Consensus       342 ~~~l~~~~~~----------~--------------t~~~~~~---~~aaa~a~L--~~i~~---~~~~~~~~~~~~~l~~  389 (480)
                      ...+.....+          .              ....|.-   +..+++++.  ..+..   +++.+++.++..++++
T Consensus       317 ~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~  396 (993)
T PLN02414        317 KRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAA  396 (993)
T ss_pred             HhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            6654321100          0              0112221   222233222  11111   3455777788888888


Q ss_pred             HHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHH
Q 011669          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       390 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~  469 (480)
                      +|.++  .+.....    -.+--+.+.-      +   ...++.+.|.++||.++...  .+.+|+++...+|++|||.+
T Consensus       397 ~L~~~--G~~~~~~----~~f~~vt~~~------~---~~~~v~~~L~~~gI~l~~~~--~~~lrvs~~e~~T~edId~L  459 (993)
T PLN02414        397 GLKKL--GFQVQSL----PFFDTVKVKC------S---DADAIADAAAKVGINLRVVD--ANTVTVSFDETTTLEDVDKL  459 (993)
T ss_pred             HHhhc--CCccCCC----CCcCeEEEec------C---CHHHHHHHHHHCCCeeEEec--CCeEEEEeeccCCHHHHHHH
Confidence            88654  2222211    1111122211      1   13668899999999887543  56799999999999999999


Q ss_pred             HHHHH
Q 011669          470 VDVMD  474 (480)
Q Consensus       470 l~~l~  474 (480)
                      +++|.
T Consensus       460 ~~~l~  464 (993)
T PLN02414        460 FKVFA  464 (993)
T ss_pred             HHHHc
Confidence            99996

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.94  E-value=8.8e-07  Score=86.29  Aligned_cols=323  Identities=15%  Similarity=0.155  Sum_probs=178.2

Q ss_pred             CCCHHHHHHHHHHHHh-cccc--ccccC-----ChHHHHHHHHH-HHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCc
Q 011669          115 HCHPYVVDSIVNQIKR-IQHS--TVLYL-----NHAIADFAEAL-ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN  185 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~-~~~~--~~~~~-----~~~~~~l~e~L-~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~  185 (480)
                      +..|.|.+|+-..+.. +...  ..+|+     -+..++|+-.. .++++.+.-+| =-.||+.||.+++.....  +++
T Consensus        37 ~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anV-QPhSGs~AN~av~~All~--pGD  113 (413)
T COG0112          37 FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANV-QPHSGSQANQAVYLALLQ--PGD  113 (413)
T ss_pred             cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCcccc-CCCCchHHHHHHHHHHcC--CCC
Confidence            4569999998876653 2211  11221     24445555444 44555544444 457999999998876554  778


Q ss_pred             eEEEEcCCccccccccc-ccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccC
Q 011669          186 DIISLRNAYHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ  264 (480)
Q Consensus       186 ~ii~~~~~yhG~~~~~~-~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~  264 (480)
                      .|+..+-.. |....-- ..+..+.+        +..++++...     ++.....++++++....   +.+.||+    
T Consensus       114 timgm~l~~-GGHltHg~~v~~sG~~--------~~~v~Y~vd~-----et~~IDyD~~~k~a~e~---kPK~ii~----  172 (413)
T COG0112         114 TIMGLDLSH-GGHLTHGSPVNFSGKL--------FNVVSYGVDP-----ETGLIDYDEVEKLAKEV---KPKLIIA----  172 (413)
T ss_pred             eEecccCCC-CCcccCCCCCCcccee--------EEeEeccccc-----ccCccCHHHHHHHHHHh---CCCEEEE----
Confidence            887764333 3222111 11111111        2223332211     11111267788877754   5566765    


Q ss_pred             CCCcceeCCCChHHHHHHHHHHhCCEEEEcccc-cCccccCCCcccccccCCCcceeeec--cccccCccccccccC-HH
Q 011669          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT-PE  340 (480)
Q Consensus       265 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~-~~  340 (480)
                        |+..-+-.--+++++++|++.|++|.+|-+| .|+--.|  .+  +..=-..|+||-+  |.|-| -|-|.|+.+ ++
T Consensus       173 --G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G--~~--p~P~~~AdvVTtTTHKTlrG-PrGG~Il~~~ee  245 (413)
T COG0112         173 --GGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGG--VH--PNPLPHADVVTTTTHKTLRG-PRGGIILTNDEE  245 (413)
T ss_pred             --CccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcc--cC--CCCCCccceEeCCcccCCCC-CCceEEEeccHH
Confidence              3333334444899999999999999999886 4553344  11  1111126888655  88865 255667777 48


Q ss_pred             HHHhhcCCCccccCCCcHHHHHHHHHH-HHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEe
Q 011669          341 IAEVLTRRNYFNTFGGNPVCTAAGHAV-LKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV  416 (480)
Q Consensus       341 ~~~~l~~~~~~~t~~~~~~~~aaa~a~-L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~  416 (480)
                      +.+.+....+.++.+++-+-..||.++ +....+   .++.+++.++.+.|.+.|.+.  .+.++..- -...++.+++.
T Consensus       246 l~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~--G~~vvsGg-TdnHl~lVDl~  322 (413)
T COG0112         246 LAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER--GFKVVSGG-TDNHLVLVDLR  322 (413)
T ss_pred             HHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc--CCeEecCC-ccceEEEEEcc
Confidence            988888766666666654444443332 222222   245566666666666666653  23222210 01224455554


Q ss_pred             cCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------c-CCCEEEEeCCCCC----CHHHHHHHHHHHHHHHh
Q 011669          417 TDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------F-YGNVFRITPPLCF----TKEDADYLVDVMDYSLS  478 (480)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~-~~~~iRi~p~~~~----t~~~id~~l~~l~~~l~  478 (480)
                      +..       .......+.|.+.||.+-...       + ...-|||..|..+    .++|+.+..+.|.+++.
T Consensus       323 ~~~-------~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~  389 (413)
T COG0112         323 SKG-------LTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLD  389 (413)
T ss_pred             cCC-------CCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHh
Confidence            211       113445556667788875321       1 1245899877554    56788888888887775

>PRK15029 arginine decarboxylase; Provisional

Probab=98.89  E-value=1.3e-06  Score=94.43  Aligned_cols=311  Identities=10%  Similarity=0.043  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccC-CCccccc-cCCCe
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNWKFNV-VQTGV  219 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~-~~~g~  219 (480)
                      .+.+..+..++.++.+ +..|.+||.|.+|.+++..+..  ++++|++-+++ |-+...++.+++. +.|-.+. ...|+
T Consensus       206 ~I~eAq~~aA~~fgA~-~t~FlvNGST~gn~a~i~a~~~--~gd~Vlv~RN~-HKSv~~al~L~ga~Pvyl~P~~~~~Gi  281 (755)
T PRK15029        206 AFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACMT--DNDVVVVDRNC-HKSIEQGLILTGAKPVYMVPSRNRYGI  281 (755)
T ss_pred             HHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHHhcC--CCCEEEeeccc-HHHHHHHHHHcCCeEEEecccccccCC
Confidence            3444444445556543 5667788888888877765543  56667766555 6666667776653 2222211 01111


Q ss_pred             eEecCCCCcCCCCCCChHHHHHHHHHHHHccCC------Cce-EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS------GHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~------~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                      ..-..          ......+.+++.++.+..      .++ ++|+..|..  -|.+..    +++|.++|+++|+.|+
T Consensus       282 ~~~i~----------~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~ll  345 (755)
T PRK15029        282 IGPIY----------PQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDRLH  345 (755)
T ss_pred             ccCCC----------ccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCeEE
Confidence            11000          000004677777764311      112 456665643  355555    8999999999999999


Q ss_pred             EcccccCccccCCCcccc-ccc-----C-CCcc-eeeec--cccccCcccc-ccccCHH--HH--HhhcCCC-ccccCCC
Q 011669          293 ADEVQAGFARTGSHFWGF-EAH-----G-VVPD-IVTMA--KGIGNGIPLG-AVVTTPE--IA--EVLTRRN-YFNTFGG  356 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~-~~~-----~-~~pD-ivt~s--K~~g~G~pig-~v~~~~~--~~--~~l~~~~-~~~t~~~  356 (480)
                      +||++.+...-. ..+.- ...     . ..+| +++-|  |.+++ +.-| ++-.+..  .+  +.+.... ...|-+.
T Consensus       346 vDEAhGah~~F~-~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSP  423 (755)
T PRK15029        346 FDEAWYGYARFN-PIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHATTSP  423 (755)
T ss_pred             EECccccccccC-ccccccccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCCccccCHHHHHHHHHHHcCCCc
Confidence            999986532222 12211 111     1 3477 66655  77753 2222 2222211  11  1222211 1233344


Q ss_pred             cHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcC----c-----------------------------
Q 011669          357 NPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYG----I-----------------------------  400 (480)
Q Consensus       357 ~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~----~-----------------------------  400 (480)
                      +-+-++..-.+.+.++.   +.+.++..+....+|+.+.++...+.    .                             
T Consensus       424 SY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  503 (755)
T PRK15029        424 LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLL  503 (755)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccccccccchhhh
Confidence            43333333333333432   34666677777888888877643110    0                             


Q ss_pred             -----eeeEe------cc-c----------eeEEEEEecCCCcCC--CCHHHHHHHHHHHHHcCceeeccCcCCCEEEEe
Q 011669          401 -----IGDVR------GR-G----------FLLGVEFVTDRQLKT--PAKAETLYIMDKMKEMGVLVGKGGFYGNVFRIT  456 (480)
Q Consensus       401 -----~~~v~------g~-g----------~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~  456 (480)
                           .....      |. +          +-+.+.....+.+..  ..+.-+..+.+.|.++||.+--.+  ...+-+.
T Consensus       504 ~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~--~~~vL~l  581 (755)
T PRK15029        504 TTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTT--DFQIMFL  581 (755)
T ss_pred             ccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecC--CCeEEEE
Confidence                 00000      00 0          000111100000000  000012367778888899997655  3445566


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q 011669          457 PPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       457 p~~~~t~~~id~~l~~l~~~  476 (480)
                      .+...|+++++.++++|.+.
T Consensus       582 ~s~g~t~~~~~~L~~aL~~~  601 (755)
T PRK15029        582 FSMGVTRGKWGTLVNTLCSF  601 (755)
T ss_pred             eCCCCCHHHHHHHHHHHHHH
Confidence            67789999999999999865

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.89  E-value=4e-07  Score=101.34  Aligned_cols=277  Identities=14%  Similarity=0.138  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcC-CceEEEEcCCcccccccccccccCCCccccccCCCee
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG-CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH  220 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~-~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~  220 (480)
                      .+.++.+.++++++.+..++-+..++|.+.|+++...+...+ +++|++.+..| ..+..++....        ...|+.
T Consensus       122 al~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~h-P~~~~v~~t~a--------~~~G~e  192 (954)
T PRK05367        122 ALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVH-PQTLDVLRTRA--------EPLGIE  192 (954)
T ss_pred             HHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccC-HHHHHHHHHHH--------HhCCCE
Confidence            446778888999887777888999999999966654443222 36777776665 33333222110        112444


Q ss_pred             EecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCc
Q 011669          221 HALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF  300 (480)
Q Consensus       221 ~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgf  300 (480)
                      .+..+..      .|       ++       .+++++++ -.+.+..|.+.+    +++|.++|+++|+++++|-.+..+
T Consensus       193 v~~~~~~------~d-------~~-------~~~~~~vl-vq~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al  247 (954)
T PRK05367        193 VVVGDAA------KA-------LD-------HDDVFGVL-LQYPGTSGEVRD----YTALIAAAHARGALVAVAADLLAL  247 (954)
T ss_pred             EEEecCc------cC-------CC-------cccEEEEE-EecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhc
Confidence            4433321      01       10       13566654 445677888876    999999999999999999855322


Q ss_pred             cccCCCcccccccCCCcceeeec--cc---cc-cCccccccccCHHHHHhhcCCCcccc---------------------
Q 011669          301 ARTGSHFWGFEAHGVVPDIVTMA--KG---IG-NGIPLGAVVTTPEIAEVLTRRNYFNT---------------------  353 (480)
Q Consensus       301 gr~G~~~~~~~~~~~~pDivt~s--K~---~g-~G~pig~v~~~~~~~~~l~~~~~~~t---------------------  353 (480)
                      +. . .    .--+...|+++.+  |.   +| ||-..|++.+++++...+.....+.+                     
T Consensus       248 ~~-l-~----~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiR  321 (954)
T PRK05367        248 TL-L-T----PPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIR  321 (954)
T ss_pred             cC-C-C----ChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCccccccccccccccc
Confidence            21 1 0    1112345776543  43   22 34458899999998777653311100                     


Q ss_pred             C---CCc---HHHHHHHHHH--HHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcC
Q 011669          354 F---GGN---PVCTAAGHAV--LKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK  422 (480)
Q Consensus       354 ~---~~~---~~~~aaa~a~--L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~  422 (480)
                      +   ..|   ..+..+..+.  +..+..+   ++.+++..+..+++++|++.  .+.....    ..+--+.+..     
T Consensus       322 rekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~--G~~~~~~----~~f~~~~~~~-----  390 (954)
T PRK05367        322 REKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL--GLEVVHD----SFFDTLTVEV-----  390 (954)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc--CcccCCC----CCCCeEEEeC-----
Confidence            0   011   1111222222  2323333   44566777777888877653  2222211    1111111211     


Q ss_pred             CCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       423 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                       +  ....++.+.|+++||.+....  ++.+|++|....|++|||.++++|.
T Consensus       391 -~--~~~~~i~~~l~~~gi~~~~~~--~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        391 -G--GDAAAVLARALAAGINLRRVD--DDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             -C--CCHHHHHHHHHHCCceecccc--CCEEEEEecccCCHHHHHHHHHHHc
Confidence             1  025678999999999985432  5689999999999999999999996

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.88  E-value=7.8e-07  Score=89.76  Aligned_cols=230  Identities=17%  Similarity=0.151  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHhCCCC-------CCEEEEeCCHHHHHHHHHHHHHhhc-------C----CceEEEEcCCcccccccccc
Q 011669          142 AIADFAEALASKMPGN-------LKVVFFTNSGTEANELAIMMARLYT-------G----CNDIISLRNAYHGNAAGTMG  203 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~-------~~~v~f~~sGseA~~~Alk~ar~~~-------~----~~~ii~~~~~yhG~~~~~~~  203 (480)
                      ...++.++|+++++.+       ...-+||+||||||..|+..||...       +    .+.+++....-|-...-+..
T Consensus        80 ~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~  159 (373)
T PF00282_consen   80 IEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAAR  159 (373)
T ss_dssp             HHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHH
T ss_pred             chHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcc
Confidence            3456667777777543       1256899999999999999998642       1    23355555545654444444


Q ss_pred             cccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc-CCCc-eEEEEEcccCCCCcceeCCCChHHHHH
Q 011669          204 ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-TSGH-VAGFLSESIQGVGGIIELAPGYLPAVY  281 (480)
Q Consensus       204 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-~~~~-~a~vi~epi~~~~G~~~~~~~~l~~l~  281 (480)
                      ..+.          ++..++....    +.-|    .++|++.|++. ..+. +.+|+..--....|.+-+    +++|+
T Consensus       160 ~lGl----------g~~~I~~~~~----~~md----~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~  217 (373)
T PF00282_consen  160 ILGL----------GVRKIPTDED----GRMD----IEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIA  217 (373)
T ss_dssp             HTTS----------EEEEE-BBTT----SSB-----HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHH
T ss_pred             eeee----------EEEEecCCcc----hhhh----HHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHh
Confidence            4332          3444443221    1123    56777766532 1223 445555555556788876    99999


Q ss_pred             HHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeeec--cccccCccccccccCHH-HH-HhhcCC---Cc---
Q 011669          282 KSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPE-IA-EVLTRR---NY---  350 (480)
Q Consensus       282 ~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~s--K~~g~G~pig~v~~~~~-~~-~~l~~~---~~---  350 (480)
                      ++|++|++++++|.++.|....- +..-.-..++ ..|.+++.  |.++..++.|+++.+.+ .. ..+...   ..   
T Consensus       218 ~i~~~~~~wlHVDaA~gg~~~~~-~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~  296 (373)
T PF00282_consen  218 DICEKYNIWLHVDAAYGGSALLS-PEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDD  296 (373)
T ss_dssp             HHHHHCT-EEEEEETTGGGGGGH-CTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-
T ss_pred             hhccccceeeeeccccccccccc-ccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccc
Confidence            99999999999999998732211 1111111233 35777655  99988899999988764 33 333110   00   


Q ss_pred             --------c--ccCC-CcHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHh
Q 011669          351 --------F--NTFG-GNPVCTAAGHAVLKVIQKDKLQNNAH---VVGSYLKERLTAL  394 (480)
Q Consensus       351 --------~--~t~~-~~~~~~aaa~a~L~~i~~~~~~~~~~---~~~~~l~~~L~~l  394 (480)
                              .  .|+. +-.......+.+|+.+-.+.+.+.++   ++.+++.+.|++.
T Consensus       297 ~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~  354 (373)
T PF00282_consen  297 RESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKD  354 (373)
T ss_dssp             SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                    0  1222 22455556666777665665554444   4455555555543

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.85  E-value=1.4e-06  Score=85.65  Aligned_cols=297  Identities=20%  Similarity=0.272  Sum_probs=180.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCCEE-EEeCCHHHHHHHHHHHHHhhc-----CCceEEEEcCCcccccccccccccCCCcccc
Q 011669          140 NHAIADFAEALASKMPGNLKVV-FFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~~~v-~f~~sGseA~~~Alk~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      -+.+.+|.++|++..+  ++.| +--|+|++.=.+.|.+.|.|.     +..+++..-.+-||.-.+..+..        
T Consensus       108 l~li~~Lq~~L~~ITG--~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~--------  177 (496)
T COG1003         108 LELIYELQEWLKEITG--MDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMA--------  177 (496)
T ss_pred             HHHHHHHHHHHHHhcC--CceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhc--------
Confidence            3566788888888874  4544 445789999999998888873     12344444567788776665554        


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                          |+..+.++...++.      -.+++|++.++    ++++++++...+. -|..   ++-+++|.++.+++|..|..
T Consensus       178 ----G~~VV~V~~~~~G~------VDlddLk~k~~----~~~AalMiTnPsT-~GvF---E~~I~ei~~ivH~~Gg~vY~  239 (496)
T COG1003         178 ----GFKVVVVKCDENGN------VDLDDLRAKAE----DNLAALMITNPST-LGVF---EEDIREICEIVHEAGGQVYY  239 (496)
T ss_pred             ----CceEEEEecCCCCC------ccHHHHHHHhc----cceeEEEeccCcc-cccc---hhhHHHHHHHHHHcCCEEEe
Confidence                34444433322222      22778887775    5788777754433 3444   23489999999999999999


Q ss_pred             ccc----ccCccccCCCcccccccCCCccee------eecccccc-CccccccccCHHHHHhhcCC----C---------
Q 011669          294 DEV----QAGFARTGSHFWGFEAHGVVPDIV------TMAKGIGN-GIPLGAVVTTPEIAEVLTRR----N---------  349 (480)
Q Consensus       294 DEv----~tgfgr~G~~~~~~~~~~~~pDiv------t~sK~~g~-G~pig~v~~~~~~~~~l~~~----~---------  349 (480)
                      |-+    +-|..|.| . ++       .|++      ||+=.-|| |-..|-|.+++++...+-..    .         
T Consensus       240 DGANlNA~vG~~rPG-d-~G-------~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~  310 (496)
T COG1003         240 DGANLNAIVGLARPG-D-MG-------FDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYD  310 (496)
T ss_pred             cCcchhhhhcccccc-c-cc-------cceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCC
Confidence            964    44555666 2 22       3444      44444454 57788888888877655431    0         


Q ss_pred             ------ccccCCCcHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCC
Q 011669          350 ------YFNTFGGNPVCTAAGHAVLKVIQKDKLQN---NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ  420 (480)
Q Consensus       350 ------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~---~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~  420 (480)
                            ....|.||......+++-+..+-.+.+.+   ..--+.+|+..+|+.   .|+++..-  .. .+.=|++-+..
T Consensus       311 ~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~---~y~~~y~~--~~-~~~HE~ild~r  384 (496)
T COG1003         311 GKKSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG---YYPVPYTG--EN-RVAHECILDAR  384 (496)
T ss_pred             CCccceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh---cCccccCC--CC-cceeEEEeech
Confidence                  01234455555556666666655554432   223345677777665   33433211  11 12223322211


Q ss_pred             -cCCCCHHHHHHHHHHHHHcCceeeccCc---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          421 -LKTPAKAETLYIMDKMKEMGVLVGKGGF---YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       421 -~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       .+......+..++++|++.|+.--+-..   -.+.+-|-|-=.-+++++|++++++.++.++
T Consensus       385 ~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~E  447 (496)
T COG1003         385 PLKKETGVRALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREE  447 (496)
T ss_pred             HhHhhcCCcHHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence             1111223467899999999988644321   1367888888888999999999999877653

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.79  E-value=4.2e-07  Score=91.17  Aligned_cols=274  Identities=16%  Similarity=0.154  Sum_probs=137.6

Q ss_pred             eCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHH
Q 011669          164 TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV  243 (480)
Q Consensus       164 ~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l  243 (480)
                      ..||+.||..++.....  ++++|+.++... |.....-.....  .+.......+..++++.... ....|    .+++
T Consensus        92 p~SGs~An~av~~aLl~--pGD~Im~l~l~~-GGHlshg~~~~~--~~~~~~~~~~~~~~y~~d~~-~~~ID----~d~l  161 (399)
T PF00464_consen   92 PHSGSQANLAVYMALLK--PGDTIMGLSLPH-GGHLSHGSSVNF--KKISASGLYFESVPYPVDPD-TGLID----YDEL  161 (399)
T ss_dssp             -SSHHHHHHHHHHHHT---TT-EEEEEEGGG-T--GGGT-TTSH--SBSSHHHHHSEEEEEEB-TT-TSSB-----HHHH
T ss_pred             cCCchHHHHHHHHHHHh--hcCcEEecChhh-cccccccccccc--cccccccceEEEEeeeeecC-CCeEC----HHHH
Confidence            45999999988876554  788998886443 322211110000  00000001122222221100 11123    6788


Q ss_pred             HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeee
Q 011669          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTM  322 (480)
Q Consensus       244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~  322 (480)
                      +++++..   +++.||+....-      +-+--+++++++|++.|++|++|-.|. |+--.|  .+. +-+. ..|++|+
T Consensus       162 ~~~a~~~---kPklIi~G~S~y------~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g--~~~-~P~~-~ADvvt~  228 (399)
T PF00464_consen  162 EKLAKEH---KPKLIICGASSY------PRPIDFKRFREIADEVGAYLMADISHIAGLIAGG--LFP-NPFP-YADVVTG  228 (399)
T ss_dssp             HHHHHHH-----SEEEEE-SST------SS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTT--SS---GCC-TSSEEEE
T ss_pred             HHHHhhc---CCCEEEECchhc------cCccCHHHHHHHHHhcCcEEEecccccccceehh--eec-Cccc-cceEEEe
Confidence            8887754   667888865432      222226999999999999999999875 442233  221 1122 2689987


Q ss_pred             c--cccccCccccccccC--------------HHHHHhhcCCCccccCCCcHHHHHHHH-HHHHHhhh---hHHHHHHHH
Q 011669          323 A--KGIGNGIPLGAVVTT--------------PEIAEVLTRRNYFNTFGGNPVCTAAGH-AVLKVIQK---DKLQNNAHV  382 (480)
Q Consensus       323 s--K~~g~G~pig~v~~~--------------~~~~~~l~~~~~~~t~~~~~~~~aaa~-a~L~~i~~---~~~~~~~~~  382 (480)
                      |  |.|.|. +-|.|+.+              +++.+.+....+.+..+++-....+++ .+|.....   .++.+++.+
T Consensus       229 sThKtl~GP-rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~  307 (399)
T PF00464_consen  229 STHKTLRGP-RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVK  307 (399)
T ss_dssp             ESSGGG-SS-S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             ecccccccc-CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence            6  888653 55778888              788888876554444454444333333 23333322   255666677


Q ss_pred             HHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------cCCCEEEE
Q 011669          383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------FYGNVFRI  455 (480)
Q Consensus       383 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi  455 (480)
                      +.+.|.+.|.+.  .+.++.. --...++++++....       .....+.+.|.+.||.+....       .....|||
T Consensus       308 NAk~La~~L~~~--G~~v~~g-gTd~H~vlvd~~~~~-------~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRl  377 (399)
T PF00464_consen  308 NAKALAEALQER--GFKVVTG-GTDNHQVLVDLRSFG-------IDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRL  377 (399)
T ss_dssp             HHHHHHHHHHHT--T-EEGGG-S-SSSEEEEEGGGGT-------S-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEE
T ss_pred             HHHHHHHHHhhC--CcEEEEC-CCCCCeEEEEecccc-------cchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEE
Confidence            777777777664  2333321 012335666653321       124556778889999985431       11256999


Q ss_pred             eCCCC----CCHHHHHHHHH
Q 011669          456 TPPLC----FTKEDADYLVD  471 (480)
Q Consensus       456 ~p~~~----~t~~~id~~l~  471 (480)
                      .-+..    ..++|+.++.+
T Consensus       378 GT~~lT~rG~~e~dm~~iA~  397 (399)
T PF00464_consen  378 GTPALTRRGMKEEDMKEIAE  397 (399)
T ss_dssp             ESHHHHHTT--HHHHHHHHH
T ss_pred             CCHHHHhCCCCHHHHHHHHh
Confidence            85533    34566655443

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=98.74  E-value=2.9e-07  Score=92.74  Aligned_cols=231  Identities=16%  Similarity=0.158  Sum_probs=121.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccC-CCccccccC-C
Q 011669          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNWKFNVVQ-T  217 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~~-~  217 (480)
                      ...+.+..+.+++.++.+ +..|.+||.|.+|..++..+..  ++++|++-+++ |-+...++-+++. +.|..+... .
T Consensus        65 ~G~I~eAe~~aA~~fGAd-~t~flvnGsT~g~~a~i~a~~~--~gd~VLv~RN~-HkSv~~alil~ga~Pvyi~p~~~~~  140 (417)
T PF01276_consen   65 EGIIKEAEELAARAFGAD-KTFFLVNGSTSGNQAMIMALCR--PGDKVLVDRNC-HKSVYNALILSGAIPVYIPPEDNEY  140 (417)
T ss_dssp             BTHHHHHHHHHHHHHTES-EEEEESSHHHHHHHHHHHHHTT--TTCEEEEETT---HHHHHHHHHHTEEEEEEEEEE-TT
T ss_pred             ccHHHHHHHHHHHhcCCC-eEEEEecCchHHHHHHHHHhcC--CCCEEEEcCCc-HHHHHHHHHHcCCeEEEecCCcccc
Confidence            345566666667777542 4455667777888888876654  67777777766 5555556666553 333322211 2


Q ss_pred             CeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE---EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA---GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a---~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      |+..-..+..    |      ..+.+++.|++. ++..+   +||..|..  -|.+..    +++|.++|+++++.|++|
T Consensus       141 gi~~~i~~~~----~------~~~~i~~~l~~~-p~~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvD  203 (417)
T PF01276_consen  141 GIIGGISPDE----F------NEEDIEEALKEH-PDAKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVD  203 (417)
T ss_dssp             S-BEEB-GGG----G------SHHHHHHHHHHC-TTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE
T ss_pred             CCccCCChhh----h------hHHHHHHHHHhC-ccccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEE
Confidence            3222111100    1      036788888765 32333   66666643  366666    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCcc-------eeeec--cccccCcc-ccccccCHHH---HHhhcCC-CccccCCCcHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPD-------IVTMA--KGIGNGIP-LGAVVTTPEI---AEVLTRR-NYFNTFGGNPVC  360 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pD-------ivt~s--K~~g~G~p-ig~v~~~~~~---~~~l~~~-~~~~t~~~~~~~  360 (480)
                      |++.+.-.-. .+ .........|       +++-|  |.+++ +. -+++-.+.+.   .+.+... ....|-+.+-+-
T Consensus       204 EAhGah~~F~-~l-p~~a~~~gad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~l  280 (417)
T PF01276_consen  204 EAHGAHFGFH-PL-PRSALALGADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPL  280 (417)
T ss_dssp             -TT-TTGGCS-GG-GTTCSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHH
T ss_pred             ccccccccCC-CC-ccchhhccCccccccceeeeechhhcccc-cccceEEEecCCCcccHHHHHHHHHHHcCCChHHHH
Confidence            9986431111 11 1123344556       77766  77653 22 2333332221   1222221 122344444444


Q ss_pred             HHHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHHh
Q 011669          361 TAAGHAVLKVI-Q--KDKLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       361 ~aaa~a~L~~i-~--~~~~~~~~~~~~~~l~~~L~~l  394 (480)
                      ++..-.+.+.+ .  .+.+.++..+....+|+.|+++
T Consensus       281 mASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~  317 (417)
T PF01276_consen  281 MASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRL  317 (417)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            44444444444 2  2357788888888899988663

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.72  E-value=9.6e-06  Score=77.89  Aligned_cols=354  Identities=18%  Similarity=0.206  Sum_probs=188.5

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      .+..+||+.+-.++..+   ..+-..|    +-++.-  ...-+.....|++...+.++  .+.++-+.-|--|=..-+.
T Consensus        44 Sedv~IDLLTDSGTgam---s~~qwaa----mm~GDE--AYagsrs~~~L~~avkdifG--fq~~iPthQGRgAE~Il~~  112 (471)
T COG3033          44 SEDVFIDLLTDSGTGAM---TDKQWAA----MMRGDE--AYAGSRSYYALADAVKDIFG--FQYTIPTHQGRGAENILIP  112 (471)
T ss_pred             ccceEEEeeccCCcccc---cHHHHHH----Hhccch--hhcccccHHHHHHHHHHhcC--ceeeeeccCCccHHHHHHH
Confidence            45689999865554322   1222222    222211  11125667789999999994  6778888877666554444


Q ss_pred             HHHh---hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          177 MARL---YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       177 ~ar~---~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      ..++   .-++.+.++|++.|+-.+.+.....+.-..  +.+...........++.+.++      ++.|+++|+..+.+
T Consensus       113 i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~--n~~~~ea~d~~~~~pFKGd~D------~~kLe~lidevG~~  184 (471)
T COG3033         113 ILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPR--NVYVDEAFDTEVKYPFKGNFD------LEKLERLIDEVGAD  184 (471)
T ss_pred             HHhhhccccCCccccccccceecchhHHHHhcCCccc--cccccccccccccCCCCCccC------HHHHHHHHHHhCcc
Confidence            4433   224567888888887777666655542211  111111112222334555544      78999999987777


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC----cc--cc-CCCccccccc--C--CCcceeee
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----FA--RT-GSHFWGFEAH--G--VVPDIVTM  322 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg----fg--r~-G~~~~~~~~~--~--~~pDivt~  322 (480)
                      ++..|++.-.+|..|..+.+-.-+++++++|++||+.++.|.+-..    |-  |. |-.-|.+...  .  -..|-.+|
T Consensus       185 nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~m  264 (471)
T COG3033         185 NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTM  264 (471)
T ss_pred             cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhhee
Confidence            7877776665555555566888899999999999999999975321    10  00 1011111100  0  02344455


Q ss_pred             c-cccccCcccc-ccccCHH----HHHhhcCC----CccccCCC----cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 011669          323 A-KGIGNGIPLG-AVVTTPE----IAEVLTRR----NYFNTFGG----NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLK  388 (480)
Q Consensus       323 s-K~~g~G~pig-~v~~~~~----~~~~l~~~----~~~~t~~~----~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~  388 (480)
                      | |-=| =..+| +++.+++    +...++..    ..+.||+|    ..-++|++   |..--+.+++++--+..+||.
T Consensus       265 S~KKD~-lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvG---L~e~~~~~yl~~Rv~Qv~YL~  340 (471)
T COG3033         265 SAKKDG-LVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVG---LREGVNFDYLAHRVAQVQYLA  340 (471)
T ss_pred             eccccc-eeccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHH---HHHhcCcHHHHHHHHHHHHHH
Confidence            5 3111 02333 4555554    33333332    12345554    23333333   332234556666556667888


Q ss_pred             HHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHH-HHHHHH-HHHHHcCceeeccCcC---------------CC
Q 011669          389 ERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA-ETLYIM-DKMKEMGVLVGKGGFY---------------GN  451 (480)
Q Consensus       389 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~-~~~~~~-~~l~~~Gv~v~~~~~~---------------~~  451 (480)
                      ++|.+.  .-|++..+-  |.-..++...- -+..|... -++.++ +.-++.||-...-|.+               -+
T Consensus       341 ~~l~~~--GVpi~~paG--GHavfvda~~~-lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~e  415 (471)
T COG3033         341 DGLEEA--GVPIVQPAG--GHAVFVDAGKF-LPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAE  415 (471)
T ss_pred             HHHHhc--CCeeEecCC--CceEEeehhhh-cCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchh
Confidence            888775  223222222  32223332110 00111111 123333 3334567665432211               15


Q ss_pred             EEEEeCC-CCCCHHHHHHHHHHHHHHHh
Q 011669          452 VFRITPP-LCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       452 ~iRi~p~-~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+|+..| -+.|.+++|..++.++++.+
T Consensus       416 lvRltipRrtYt~~HmD~V~~a~~~l~e  443 (471)
T COG3033         416 LVRLTIPRRTYTQTHMDFVIEAFKALKE  443 (471)
T ss_pred             eeeEeccccccchhHHHHHHHHHHHHHh
Confidence            7899877 45699999999999988765

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.62  E-value=2e-06  Score=82.66  Aligned_cols=263  Identities=15%  Similarity=0.166  Sum_probs=143.6

Q ss_pred             CCEEEEeCCHHHHHHHHHHHHHhh----cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCC
Q 011669          158 LKVVFFTNSGTEANELAIMMARLY----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG  233 (480)
Q Consensus       158 ~~~v~f~~sGseA~~~Alk~ar~~----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~  233 (480)
                      -..++|.+|+|+-+++|+-..--.    .+.-+|++..|-|.-+...+--.. ...|++.                    
T Consensus        66 gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~-s~~y~w~--------------------  124 (363)
T PF04864_consen   66 GRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFD-SRLYKWA--------------------  124 (363)
T ss_dssp             TSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT--BTTEEEE--------------------
T ss_pred             CcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhcc-ccCcccc--------------------
Confidence            467999999999999988654222    123467777777754433331111 1111111                    


Q ss_pred             CChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc
Q 011669          234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH  313 (480)
Q Consensus       234 ~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~  313 (480)
                      .|..    ...   +...++...=++..|+|+.|....          .+++.-+.-+|.|=+|- +    +++-.+.. 
T Consensus       125 Gda~----~~~---~~~~~~~~IElVTSPNNPDG~lr~----------~V~~g~~~k~I~D~AYY-W----PhyTpI~~-  181 (363)
T PF04864_consen  125 GDAS----NFK---NSDNPSPYIELVTSPNNPDGQLRE----------AVLNGSSGKVIHDLAYY-W----PHYTPITA-  181 (363)
T ss_dssp             EECC----CGT---T-S-CCGEEEEEESS-TTT----------------SSTTTEEEEEEE-TT--S----TTTS---S-
T ss_pred             ccHH----hhc---cCCCCCCeEEEEeCCCCCcccccc----------hhcCCCCcceeeeeeee-c----ccccccCC-
Confidence            1100    000   100123555677888776654322          23345566789998873 1    12222221 


Q ss_pred             CCCccee--eeccccc-cCccccccccCH-HHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh--------HHHHHHH
Q 011669          314 GVVPDIV--TMAKGIG-NGIPLGAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD--------KLQNNAH  381 (480)
Q Consensus       314 ~~~pDiv--t~sK~~g-~G~pig~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~--------~~~~~~~  381 (480)
                      ...-||+  |+||.-| +|-|+||.++++ ++.+.+......+|.+.+-=+|.-++..|+.+-+.        ++.+.-.
T Consensus       182 ~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~  261 (363)
T PF04864_consen  182 PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGY  261 (363)
T ss_dssp             -B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHH
T ss_pred             CCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHH
Confidence            1233544  8899999 899999988875 57777766666789998888888888888776431        2333333


Q ss_pred             HHHHHHHHHHHHhHHhcCce-------------e-eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC
Q 011669          382 VVGSYLKERLTALKDKYGII-------------G-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG  447 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~~~~~~-------------~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  447 (480)
                      +.-+...++|+++...-...             . .......+.|+....++         ...+...|++.||+.+.|.
T Consensus       262 ~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~ee---------d~DC~~~l~~~~I~tr~G~  332 (363)
T PF04864_consen  262 STMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREE---------DEDCYAVLREAKIITRSGV  332 (363)
T ss_dssp             HHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCG---------GSSHHHHHHCTTEEEEEGG
T ss_pred             HHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcc---------cccHHHHHHhCCcccCCCC
Confidence            33333334444443322111             1 12344678888875432         1346777888999998885


Q ss_pred             cCC---CEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          448 FYG---NVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       448 ~~~---~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      .|+   .++||+  +..++++.|.++++|..
T Consensus       333 ~fga~~ryVRlS--ml~~~d~Fd~l~~rL~~  361 (363)
T PF04864_consen  333 LFGADSRYVRLS--MLKRDDDFDQLLERLSK  361 (363)
T ss_dssp             GGTS-TTEEEEE--SSS-HHHHHHHHHHHHC
T ss_pred             ccCCCCCeEEEe--ccCCHHHHHHHHHHHHh
Confidence            554   799999  89999999999999975

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK13578 ornithine decarboxylase; Provisional

Probab=98.57  E-value=1.1e-05  Score=86.48  Aligned_cols=307  Identities=12%  Similarity=0.008  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccc-ccccccC-CCcccccc-CCC
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG-TMGATAQ-SNWKFNVV-QTG  218 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~-~~~~~~~-~~~~~~~~-~~g  218 (480)
                      .+.+-.+..++.++.+ +..|++||.|.+|..++..+..  +++.|++-+++ |-+... ++.+++. +.|-.+.. ..|
T Consensus       175 ~i~eAq~~AA~~fgAd-~tyFlvNGTS~gn~a~i~a~~~--~Gd~VLvdRN~-HKSv~hgaLiLsGa~PVYl~P~~n~~G  250 (720)
T PRK13578        175 AAKDAQKHAAKVFNAD-KTYFVLNGTSASNKVVTNALLT--PGDLVLFDRNN-HKSNHHGALIQAGATPVYLETARNPFG  250 (720)
T ss_pred             HHHHHHHHHHHHhCCC-ceEEEeCChhHHHHHHHHHhcC--CCCEEEeeccc-HHHHHHHHHHHcCCeEEEeeccccccC
Confidence            3444444555556543 5567788888888888876543  56677766665 544443 3555542 33322111 011


Q ss_pred             eeEecCCCCcCCCCCCChHH-HHHHHHHHHHccCCC------c-eEEEEEcccCCCCcceeCCCChHHHHHHH-HHHhCC
Q 011669          219 VHHALNPDPYRGVFGADGEM-YAKDVQDLIDFGTSG------H-VAGFLSESIQGVGGIIELAPGYLPAVYKS-IKKAGG  289 (480)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~-~~~~le~~i~~~~~~------~-~a~vi~epi~~~~G~~~~~~~~l~~l~~l-~~~~gi  289 (480)
                      +..-           .+.+. ..+.+++.|++..++      . .++||..|..  .|.+..    +++|.++ |++++ 
T Consensus       251 i~g~-----------I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~-  312 (720)
T PRK13578        251 FIGG-----------IDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD-  312 (720)
T ss_pred             CcCC-----------CChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC-
Confidence            1110           01110 034577777654221      2 3455555533  355555    8999998 68888 


Q ss_pred             EEEEcccccCccccCCCc--ccccccCCCcc----eeeec--cccccCccc-cccccCHHHH---------HhhcCCC-c
Q 011669          290 LCIADEVQAGFARTGSHF--WGFEAHGVVPD----IVTMA--KGIGNGIPL-GAVVTTPEIA---------EVLTRRN-Y  350 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~--~~~~~~~~~pD----ivt~s--K~~g~G~pi-g~v~~~~~~~---------~~l~~~~-~  350 (480)
                      .|++||++.+.-+-.+.+  +.-......+|    ++|=|  |.+++ +-- +++-.+...+         +.+.... .
T Consensus       313 ~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m  391 (720)
T PRK13578        313 YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNHIKGQARYCPHKRLNNAFML  391 (720)
T ss_pred             cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCcccccccccCCHHHHHHHHHH
Confidence            999999986542222110  11011233566    66655  76653 222 2333322111         1222111 1


Q ss_pred             cccCCCcHHHHHHHHHH-HHHhh---hhHHHHHHHHHHHHHHHHHHHhHHhcCcee--eEe-------------------
Q 011669          351 FNTFGGNPVCTAAGHAV-LKVIQ---KDKLQNNAHVVGSYLKERLTALKDKYGIIG--DVR-------------------  405 (480)
Q Consensus       351 ~~t~~~~~~~~aaa~a~-L~~i~---~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~v~-------------------  405 (480)
                      ..|-+.+ ....|.+.+ -..++   .+.+.+...+....+|+.|.+....+..+.  .+.                   
T Consensus       392 ~qSTSPs-Y~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w  470 (720)
T PRK13578        392 HASTSPF-YPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFF  470 (720)
T ss_pred             HcCCChH-HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhccccccc
Confidence            1222222 222233322 22222   235667777777777777733222221110  000                   


Q ss_pred             ---------ccc-----e-e-----EEEEEecCCCc---C--CCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCC
Q 011669          406 ---------GRG-----F-L-----LGVEFVTDRQL---K--TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLC  460 (480)
Q Consensus       406 ---------g~g-----~-~-----~~i~~~~~~~~---~--~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~  460 (480)
                               |..     . +     +.+..  .+..   .  ...+.-...+.+.|.++||.+-..+  .+.+-+..+..
T Consensus       471 ~~~p~~~whgf~~~~~~~~~lDP~KltI~t--~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d--~~~vL~l~s~g  546 (720)
T PRK13578        471 SFEPGEKWHGFEGYAEDQYFVDPCKLLLTT--PGIDAETGEYEDFGIPATILANYLRENGIVPEKCD--LNSILFLLTPA  546 (720)
T ss_pred             ccccCccccccccccccccccCCceEEEEc--CCcCcccccccccCccHHHHHHHHHHcCCEEEecC--CCeEEEEeCCC
Confidence                     000     0 0     00111  0000   0  0000014567788888899997765  34555666778


Q ss_pred             CCHHHHHHHHHHHHHH
Q 011669          461 FTKEDADYLVDVMDYS  476 (480)
Q Consensus       461 ~t~~~id~~l~~l~~~  476 (480)
                      .|+++++.++++|.++
T Consensus       547 ~t~~~~~~Lv~aL~~f  562 (720)
T PRK13578        547 EDMAKLQQLVAMLARF  562 (720)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999999865

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=98.53  E-value=3.8e-05  Score=82.38  Aligned_cols=306  Identities=13%  Similarity=0.116  Sum_probs=153.4

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccC-CCcccccc-CCC
Q 011669          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNWKFNVV-QTG  218 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~-~~g  218 (480)
                      ....+..+..++.++.+ +..|.+||.|.+|..++..+..  +++.|++-+++ |-+...++.+++. +.|-.+.. ..|
T Consensus       195 G~i~eAe~~aA~~fgAd-~tyfvvNGTS~~n~av~~a~~~--~Gd~VLvdRN~-HKSv~~aLilsga~PVYl~P~~n~~G  270 (713)
T PRK15399        195 GPHLEAEEYIARTFGAE-QSYIVTNGTSTSNKIVGMYAAP--AGSTLLIDRNC-HKSLAHLLMMSDVVPIWLKPTRNALG  270 (713)
T ss_pred             hHHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHhcC--CCCEEEeeccc-HHHHHHHHHHcCCeeEEecccccccC
Confidence            34445555555667543 4566777778888888876543  56666666555 5555556666653 33322111 112


Q ss_pred             eeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC--CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEE-EEcc
Q 011669          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS--GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC-IADE  295 (480)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill-I~DE  295 (480)
                      +..-..+.          ....+.+++.+++...  ...++||..|..  .|.+..    +++|.++|   |+.+ ++||
T Consensus       271 i~g~I~~~----------~~~~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilvDE  331 (713)
T PRK15399        271 ILGGIPRR----------EFTRDSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHFDS  331 (713)
T ss_pred             CcCCCChh----------hccHHHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEEec
Confidence            11100000          0013678888875421  114677776633  365654    78888888   6766 5999


Q ss_pred             cccCccccCCCc---ccccccCCCccee---eec--cccccCcc-ccccccCH-----HHHHhhcCCCccccCCCcHHHH
Q 011669          296 VQAGFARTGSHF---WGFEAHGVVPDIV---TMA--KGIGNGIP-LGAVVTTP-----EIAEVLTRRNYFNTFGGNPVCT  361 (480)
Q Consensus       296 v~tgfgr~G~~~---~~~~~~~~~pDiv---t~s--K~~g~G~p-ig~v~~~~-----~~~~~l~~~~~~~t~~~~~~~~  361 (480)
                      ++.+.-+-.+.+   .+.. .+-.+|.+   |=|  |.+++ +- -+++-.+.     .+.+.+.   ...|-+.+-+-+
T Consensus       332 Ahgah~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~a~~---m~~STSPsY~Lm  406 (713)
T PRK15399        332 AWVPYTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNEAFM---MHTSTSPSYPIV  406 (713)
T ss_pred             cchhhhhcCcccCCcChhh-CCCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHHHHH---HHcCCCcHHHHH
Confidence            987542222111   1111 11145766   434  77753 21 12222221     1222221   112333332222


Q ss_pred             HHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhHHhc-CceeeEec------cc-----------------------
Q 011669          362 AAGHAVLKVIQ---KDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRG------RG-----------------------  408 (480)
Q Consensus       362 aaa~a~L~~i~---~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~v~g------~g-----------------------  408 (480)
                      |..-.+...++   .+.+.++..+....+|+.|.++.... ++...+.+      ..                       
T Consensus       407 ASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~l  486 (713)
T PRK15399        407 ASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFL  486 (713)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccC
Confidence            22222333333   24566777888888888887764311 11001100      00                       


Q ss_pred             --eeEEEEEecC--CCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          409 --FLLGVEFVTD--RQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       409 --~~~~i~~~~~--~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                        +-+.+....-  .......+.....+.+.|.++||.+-..+  .+.+-+..+...|+++++.++++|.+.
T Consensus       487 DP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d--~~~vL~l~s~g~t~~~~~~L~~aL~~f  556 (713)
T PRK15399        487 DPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTG--PYNLLFLFSIGIDKTKAMGLLRGLTEF  556 (713)
T ss_pred             CCceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence              0001111000  00000111224567788899999997765  345666777889999999999998765

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.47  E-value=6.6e-05  Score=82.79  Aligned_cols=278  Identities=14%  Similarity=0.123  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcC-CceEEEEcCCcccccccccccccCCCccccccCCCee
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG-CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH  220 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~-~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~  220 (480)
                      .+-++-..++++++-+..+.-+..++|.+-|++++..+...+ +++|++.+.. |..+...+...        ....|+.
T Consensus       110 ~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~-hP~~~~v~~t~--------a~~~g~~  180 (939)
T TIGR00461       110 ALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDL-HPQTKSVLHTR--------AKPFGIE  180 (939)
T ss_pred             HHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCC-CcchHHHHHHH--------HHhcCcE
Confidence            445777888888865555556777888888865554443222 3566665544 44333322211        1113444


Q ss_pred             EecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCc
Q 011669          221 HALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF  300 (480)
Q Consensus       221 ~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgf  300 (480)
                      .+..          |    .++|++.+      +++++++.. ++..|.+..    +++|.++++++|+++|++--...+
T Consensus       181 v~~~----------~----~~~l~~~~------~~~~v~~q~-Pn~~G~ied----~~~i~~~~h~~gal~~~~ad~~al  235 (939)
T TIGR00461       181 VIVV----------D----CSDIKKAV------DVFGCLLQY-PATDGSILD----YKQLIDALHSHKSLVSVAADLMAL  235 (939)
T ss_pred             EEEE----------c----HHHHhhcC------CEEEEEEEC-CCCCeEEec----HHHHHHHHHHcCCEEEEEechHHh
Confidence            4332          1    23444332      466666643 345576653    899999999999999986544322


Q ss_pred             cccCCCcccccccCCCcceee-eccccc-----cCccccccccCHHHHHhhcCCCcc-----------------------
Q 011669          301 ARTGSHFWGFEAHGVVPDIVT-MAKGIG-----NGIPLGAVVTTPEIAEVLTRRNYF-----------------------  351 (480)
Q Consensus       301 gr~G~~~~~~~~~~~~pDivt-~sK~~g-----~G~pig~v~~~~~~~~~l~~~~~~-----------------------  351 (480)
                      +-.- .   -.  +...||++ .+|.||     ||--.|++.+++++...+..+..+                       
T Consensus       236 ~ll~-~---Pg--e~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIr  309 (939)
T TIGR00461       236 TLLT-P---PG--HYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIR  309 (939)
T ss_pred             CCcC-C---HH--HcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeeccccccccc
Confidence            2110 0   01  22356652 335554     354578888888887766433111                       


Q ss_pred             -----ccCCCcHHHHHHHHH-HHHHhhhhH---HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcC
Q 011669          352 -----NTFGGNPVCTAAGHA-VLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK  422 (480)
Q Consensus       352 -----~t~~~~~~~~aaa~a-~L~~i~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~  422 (480)
                           +.++.+...++...+ -+..+-.+.   +.+++..+..++.++|.+.  .+..+..    ..|--+.+.-+.   
T Consensus       310 RekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~--G~~~~~~----~fF~~~~v~~~~---  380 (939)
T TIGR00461       310 RDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND--PHELINK----TWFDTLTVKVGN---  380 (939)
T ss_pred             ccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC--CCcccCC----CccceEEEEeCC---
Confidence                 111122222221111 123333333   3455666677777777663  2222211    222222221110   


Q ss_pred             CCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       423 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                          ....++.+.++++||.++...  ++.++++.--.+|++||+.+++.|.
T Consensus       381 ----~~~~~i~~~~~~~gi~l~~~~--~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       381 ----GISSELLKAAEEFNINLRAVD--TTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             ----CCHHHHHHHHHHCCCeeeecC--CCEEEEEeecCCCHHHHHHHHHHhc
Confidence                015678899999999987643  4689999999999999999999984

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=98.46  E-value=7.2e-05  Score=80.32  Aligned_cols=305  Identities=13%  Similarity=0.124  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccC-CCcccccc-CCCe
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNWKFNVV-QTGV  219 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~-~~g~  219 (480)
                      .+.+..+..++.++.+ +..|.+||.|.+|..++..+.  ++++.|++-+++ |-+...++.+++. +.|-.+.. ..|+
T Consensus       196 ~i~eAe~~AA~~fgAd-~tyfvvNGTS~~n~av~~a~~--~~Gd~VLvdRN~-HKSv~haLilsga~PVYl~P~rn~~Gi  271 (714)
T PRK15400        196 PHKEAEEYIARVFNAD-RSYMVTNGTSTANKIVGMYSA--PAGSTVLIDRNC-HKSLTHLMMMSDVTPIYFRPTRNAYGI  271 (714)
T ss_pred             HHHHHHHHHHHHhCCC-cEEEEeCchHHHHHHHHHHhc--CCCCEEEeeccc-HHHHHHHHHHcCCeEEEecccccccCC
Confidence            3444545555556543 456667777888887777554  356666665555 5656666666653 22222110 1111


Q ss_pred             eEecCCCCcCCCCCCChHHHHHHHHHHHHccCC--CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc
Q 011669          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS--GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ  297 (480)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~  297 (480)
                      ..-..+.    .|  +    .+.+++.++....  ...++||..|..  .|.+..    +++|.++|+.++  +++||++
T Consensus       272 ~g~I~~~----~~--~----~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDEAw  333 (714)
T PRK15400        272 LGGIPQS----EF--Q----HATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDSAW  333 (714)
T ss_pred             ccCCCcc----cc--C----HHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEccc
Confidence            1100000    01  1    4677777765421  122577777733  355654    899999999887  6899998


Q ss_pred             cCccccCCCcc----cccccCCCc-c--eeeec--cccccCccc-ccccc----C-HHHHHhhcCCCccccCCCcHHHHH
Q 011669          298 AGFARTGSHFW----GFEAHGVVP-D--IVTMA--KGIGNGIPL-GAVVT----T-PEIAEVLTRRNYFNTFGGNPVCTA  362 (480)
Q Consensus       298 tgfgr~G~~~~----~~~~~~~~p-D--ivt~s--K~~g~G~pi-g~v~~----~-~~~~~~l~~~~~~~t~~~~~~~~a  362 (480)
                      .+.-+-. ..+    +.. .+-.+ |  ++|=|  |.+++ +-- +++-.    . +.+.+.+.   ...|-+.+-+-+|
T Consensus       334 gah~~F~-p~~~~~sam~-~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~vd~~~~n~a~~---m~~STSPsY~l~A  407 (714)
T PRK15400        334 VPYTNFS-PIYEGKCGMS-GGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYM---MHTTTSPHYGIVA  407 (714)
T ss_pred             hhhhccC-cccCCcChhh-cCCCCCCceEEEEchhhcccc-hhHHhHHHHcCCCCHHHHHHHHH---HHcCCCcHHHHHH
Confidence            7642222 111    111 12211 3  55545  76653 211 12211    1 11222221   1123333322222


Q ss_pred             HHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhc-CceeeEe--------------------ccc----------
Q 011669          363 AGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKY-GIIGDVR--------------------GRG----------  408 (480)
Q Consensus       363 aa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~v~--------------------g~g----------  408 (480)
                      ..-.+...++.   +.+.++..+....+|+.|.++.... ++...+.                    |..          
T Consensus       408 SLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lD  487 (714)
T PRK15400        408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLD  487 (714)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccC
Confidence            22233333332   3566777778888888887764210 0001110                    000          


Q ss_pred             -eeEEEEEecCCCcC--CCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          409 -FLLGVEFVTDRQLK--TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       409 -~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                       +-+.+....-..+.  ...+.....+.+.|.++||.+-..+  .+.+-+..+...|+++++.++++|.++
T Consensus       488 P~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d--~~~iLfl~s~g~t~~~~~~L~~aL~~f  556 (714)
T PRK15400        488 PIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTG--PYNLLFLFSIGIDKTKALSLLRALTDF  556 (714)
T ss_pred             CceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence             00011110000000  0011124567778889999997765  355667777889999999999998765

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.45  E-value=1.8e-05  Score=78.13  Aligned_cols=223  Identities=16%  Similarity=0.117  Sum_probs=129.2

Q ss_pred             CHHHHHHHHHHHHhcccc-cc---ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcC
Q 011669          117 HPYVVDSIVNQIKRIQHS-TV---LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN  192 (480)
Q Consensus       117 ~p~v~~A~~~~~~~~~~~-~~---~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~  192 (480)
                      +|++++++.+.+.....- +.   ...-+-...+++.++...  +.+.+..+|.-+-|+.+++-..-   .+.++|+..+
T Consensus        40 ~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~--~aea~~ivnnn~aAVll~~~al~---~~~EvVis~g  114 (395)
T COG1921          40 SPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLT--GAEAAAIVNNNAAAVLLTLNALA---EGKEVVVSRG  114 (395)
T ss_pred             CHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhccc--chhheeeECCcHHHHHHHHhhhc---cCCeEEEEcc
Confidence            589999998877653211 00   111122234555555444  24567788888888887765332   2334444322


Q ss_pred             ----CcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCc
Q 011669          193 ----AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGG  268 (480)
Q Consensus       193 ----~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G  268 (480)
                          ++|-.....+..            .|+..+.+-+.-        .....+++.+|....  ....-+..+..+-.|
T Consensus       115 ~lV~gg~~~v~d~~~~------------aG~~l~EvG~tn--------~t~~~d~~~AIne~t--a~llkV~s~~~~f~~  172 (395)
T COG1921         115 ELVEGGAFRVPDIIRL------------AGAKLVEVGTTN--------RTHLKDYELAINENT--ALLLKVHSSNYGFTG  172 (395)
T ss_pred             ccccCCCCChhHHHHH------------cCCEEEEecccC--------cCCHHHHHHHhccCC--eeEEEEeeccccccc
Confidence                333333333333            244444332211        112578888886421  122223344445555


Q ss_pred             ceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhc
Q 011669          269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLT  346 (480)
Q Consensus       269 ~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~  346 (480)
                      .+.     ++++.++|++||+++|+|..-...-+ - .+--.+.....+|+|+||  |-|+ |.+.|.+++++++++.+.
T Consensus       173 ~l~-----~~~l~~ia~~~~lpvivD~aSg~~v~-~-e~~l~~~la~GaDLV~~SgdKllg-GPqaGii~GkKelI~~lq  244 (395)
T COG1921         173 MLS-----EEELVEIAHEKGLPVIVDLASGALVD-K-EPDLREALALGADLVSFSGDKLLG-GPQAGIIVGKKELIEKLQ  244 (395)
T ss_pred             ccc-----HHHHHHHHHHcCCCEEEecCCccccc-c-ccchhHHHhcCCCEEEEecchhcC-CCccceEechHHHHHHHH
Confidence            554     88999999999999999986422211 0 111122345578999998  7665 446788999999998887


Q ss_pred             CCCccccCCCcHHHHHHHHHHHHHhhhh
Q 011669          347 RRNYFNTFGGNPVCTAAGHAVLKVIQKD  374 (480)
Q Consensus       347 ~~~~~~t~~~~~~~~aaa~a~L~~i~~~  374 (480)
                      .....-.+-......++..++|+.....
T Consensus       245 ~~~l~Ralrv~K~tla~l~~aLe~y~~~  272 (395)
T COG1921         245 SHPLKRALRVDKETLAALEAALELYLQP  272 (395)
T ss_pred             hhhhhhhhhcCcHhHHHHHHHHHHHcCc
Confidence            6554445556677788888888876653

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.45  E-value=7.2e-05  Score=79.51  Aligned_cols=151  Identities=17%  Similarity=0.149  Sum_probs=88.6

Q ss_pred             HHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHH---HHhCC--EEEEcccccCcccc---C-C-Cc
Q 011669          240 AKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI---KKAGG--LCIADEVQAGFART---G-S-HF  307 (480)
Q Consensus       240 ~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~---~~~gi--llI~DEv~tgfgr~---G-~-~~  307 (480)
                      .+.|++.|++.  ....+.+|+..--..+.|.+-|    +++|.++|   +++|+  ++++|.+|.|+.+.   . . .+
T Consensus       262 ~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~  337 (608)
T TIGR03811       262 INELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNF  337 (608)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccc
Confidence            56676666531  1224556666555556688877    99999998   67898  69999999986421   0 0 00


Q ss_pred             cc-------------c-------------cccCC-Ccceeeec--cccccCccccccccCHH-HHHhhcCCC-----cc-
Q 011669          308 WG-------------F-------------EAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPE-IAEVLTRRN-----YF-  351 (480)
Q Consensus       308 ~~-------------~-------------~~~~~-~pDivt~s--K~~g~G~pig~v~~~~~-~~~~l~~~~-----~~-  351 (480)
                      ..             +             ...++ ..|.+|+.  |.+.-.++.|+++.+.. +.+.+....     .. 
T Consensus       338 ~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~  417 (608)
T TIGR03811       338 IPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGA  417 (608)
T ss_pred             cccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccc
Confidence            00             0             01122 35777765  88777889998888754 444332110     00 


Q ss_pred             --------ccCCCcH--HHHHHHHHHHHHh--hhh---HHHHHHHHHHHHHHHHHHHh
Q 011669          352 --------NTFGGNP--VCTAAGHAVLKVI--QKD---KLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       352 --------~t~~~~~--~~~aaa~a~L~~i--~~~---~~~~~~~~~~~~l~~~L~~l  394 (480)
                              .+..++.  ...++.+.+++.+  ..+   .+.++..+..+++.+.|++.
T Consensus       418 ~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       418 DIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             cCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    1222332  3355566777776  333   45566666777777777764

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.44  E-value=0.0002  Score=70.78  Aligned_cols=285  Identities=19%  Similarity=0.212  Sum_probs=158.6

Q ss_pred             HHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEec
Q 011669          144 ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHAL  223 (480)
Q Consensus       144 ~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~  223 (480)
                      -++-..++++.+-+..+.-.-..+|-+-|+++..-|....+.+-+.....-|-.+..++.....        ..|+..+.
T Consensus       123 fefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~--------~~g~~i~~  194 (450)
T COG0403         123 FEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAE--------GLGIEIEV  194 (450)
T ss_pred             HHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcc--------cCceEEEE
Confidence            3555566777754444444555677666666655454333334444456666666666544322        13555543


Q ss_pred             CCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE--cccccCcc
Q 011669          224 NPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA--DEVQAGFA  301 (480)
Q Consensus       224 ~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~--DEv~tgfg  301 (480)
                      .+.       +|    .+++++. +   .+++.+++++-.+..|+....    +++|.+.++++|+++|+  |=+--++-
T Consensus       195 ~~~-------~d----~~~l~~~-~---~~~~~gv~vQyP~~~G~~~~d----~~~l~~~~h~~~al~~v~aDplaL~LL  255 (450)
T COG0403         195 VDA-------DD----LDDLESA-D---DGDVFGVLVQYPNTFGIVEED----LRALIEAAHSAGALVIVAADPLALGLL  255 (450)
T ss_pred             ecc-------ch----hhhhhhc-c---ccCeEEEEEecCCCCCccchh----HHHHHHHHhhcCCEEEEEechhHhhcc
Confidence            321       11    4555555 2   348999999877655534433    89999999999999884  43322221


Q ss_pred             -ccCCCcccccccCCCcceee-----eccccc-cCccccccccCHHHHHhhcCCCcc-----------------------
Q 011669          302 -RTGSHFWGFEAHGVVPDIVT-----MAKGIG-NGIPLGAVVTTPEIAEVLTRRNYF-----------------------  351 (480)
Q Consensus       302 -r~G~~~~~~~~~~~~pDivt-----~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~-----------------------  351 (480)
                       ..|         ....||++     |+=.++ ||--.|+..++++++..+-.+..+                       
T Consensus       256 ~pPG---------e~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIR  326 (450)
T COG0403         256 KPPG---------EFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIR  326 (450)
T ss_pred             CCcc---------ccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHh
Confidence             111         12346653     666666 677788899999987666543211                       


Q ss_pred             -----ccCCCcHHHHHHHHHHHHH-hhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcC
Q 011669          352 -----NTFGGNPVCTAAGHAVLKV-IQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK  422 (480)
Q Consensus       352 -----~t~~~~~~~~aaa~a~L~~-i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~  422 (480)
                           +..+.|..-++.+.+..-. +-.+   ++.+++.++..++.++|++....+    .+.....|.-+.+.-     
T Consensus       327 ReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~----~~~~~~fFdt~~v~~-----  397 (450)
T COG0403         327 REKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGV----ELVFDHFFDTFTVRV-----  397 (450)
T ss_pred             hhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCce----EeccccceeeEEEec-----
Confidence                 2233343222222222211 1222   345666667777777777652211    122222232222211     


Q ss_pred             CCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       423 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                       +. .....+.++....|+-++.-.  ...+-|+.-=.+|+++|+.+++.+....
T Consensus       398 -~~-~~~~~l~~~~~~~G~~L~~~~--~~~~~ia~tEt~t~~~i~~l~~~~~~~~  448 (450)
T COG0403         398 -PE-EVAEALLAAAIAGGINLRRVD--ADTVLIALTETTTKEDIDALVAAFGGVN  448 (450)
T ss_pred             -ch-hHHHHHHHHHHhcCCceeeec--CCceEEEeecccCHHHHHHHHHHHhhhc
Confidence             11 234556677777888887543  3356677666788999999999987654

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.35  E-value=7.1e-05  Score=73.56  Aligned_cols=307  Identities=17%  Similarity=0.194  Sum_probs=156.7

Q ss_pred             HHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhh--cC---------CceEEEEcCCcccccccccccccCCCccc
Q 011669          145 DFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLY--TG---------CNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       145 ~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~--~~---------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +.-.++.+..+... ..-+|+++|+-+|..|+..||..  ++         ..-|+..+---|-+..-+....+-+    
T Consensus       145 ~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~g----  220 (510)
T KOG0629|consen  145 EVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLG----  220 (510)
T ss_pred             HHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccC----
Confidence            33344444443322 24579999999999999999852  11         1223333333332222211111110    


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC-CCceEEEEEcccCCC--CcceeCCCChHHHHHHHHHHhCC
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGV--GGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-~~~~a~vi~epi~~~--~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                         ...+..+  +...++.      ...++||+.|.... ++-+ -++++..-|+  -|.+-+    |..|+++|++|+.
T Consensus       221 ---td~c~~v--~t~e~Gk------m~~~dLe~kile~k~kg~~-Pf~vnaTaGTTV~GAFDd----L~~iadiC~k~~l  284 (510)
T KOG0629|consen  221 ---TDHCIKV--KTDERGK------MIPDDLEKKILEAKAKGGV-PFFVNATAGTTVLGAFDD----LNGIADICEKHKL  284 (510)
T ss_pred             ---CceeEEe--cccccCc------cchHHHHHHHHHHHhcCCC-CeEEEecCCceeeeccCc----HHHHHHHHHhcCE
Confidence               0122222  2222222      22678887765321 1112 2344444343  355555    9999999999999


Q ss_pred             EEEEcccccCccccCCCcccc----cccCC-Ccceeeec--cccccCccccccccCHH-HHHhhcCCC---------cc-
Q 011669          290 LCIADEVQAGFARTGSHFWGF----EAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPE-IAEVLTRRN---------YF-  351 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~----~~~~~-~pDivt~s--K~~g~G~pig~v~~~~~-~~~~l~~~~---------~~-  351 (480)
                      ++++|.+..|    | -+.+.    ...|+ ..|.++..  |-+|..++.++.+.+.+ +.+...+..         +. 
T Consensus       285 WmHvDAAwGG----g-lLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Yd  359 (510)
T KOG0629|consen  285 WMHVDAAWGG----G-LLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYD  359 (510)
T ss_pred             EEEeeccccc----c-cccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceee
Confidence            9999998755    1 11111    22344 34677765  99999999999999876 444443321         00 


Q ss_pred             ccCC-CcHHHH-------HHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCC-
Q 011669          352 NTFG-GNPVCT-------AAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR-  419 (480)
Q Consensus       352 ~t~~-~~~~~~-------aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~-  419 (480)
                      .+|. ++-..+       .-.+-.++.--.   +...++.-++.+|+.++|++... +..+....+.-.-+.+.++... 
T Consensus       360 vS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~-~~~l~~~~pe~~nv~fw~vp~~l  438 (510)
T KOG0629|consen  360 VSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREG-FEMLFELEPEHVNVCFWYVPPSL  438 (510)
T ss_pred             cccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccc-ceehhcCCCceEEEeeccCchHh
Confidence            1111 111111       111111111011   34567777888899988887532 1111111111111122222211 


Q ss_pred             --CcCCCCHH-----HHHHHHHHHHHcCceee---ccCcCCCEEEE--eCCCCCCHHHHHHHHHHHHHHHh
Q 011669          420 --QLKTPAKA-----ETLYIMDKMKEMGVLVG---KGGFYGNVFRI--TPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       420 --~~~~~~~~-----~~~~~~~~l~~~Gv~v~---~~~~~~~~iRi--~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                        ....+...     .+-.+...|.++|....   |.+...+++|+  ++| +.+.+|+|.+++.|++.=+
T Consensus       439 R~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~-a~~~ad~dflldEIerlgq  508 (510)
T KOG0629|consen  439 RGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNP-ALTEADLDFLLDEIERLGQ  508 (510)
T ss_pred             ccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccc-hhhhhhHHHHHHHHHHhcc
Confidence              01111111     12346677888886543   34445577775  444 6799999999999987643

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.31  E-value=6.2e-07  Score=87.61  Aligned_cols=229  Identities=17%  Similarity=0.155  Sum_probs=55.0

Q ss_pred             ccCCCC--CHHHHHHHHHHHHhccccc---cccCChH-HHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCC
Q 011669          111 VCCGHC--HPYVVDSIVNQIKRIQHST---VLYLNHA-IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC  184 (480)
Q Consensus       111 ~~lGh~--~p~v~~A~~~~~~~~~~~~---~~~~~~~-~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~  184 (480)
                      .|||-+  ++++.+++.+.+..+..--   ..+-... ...+.+.|+...  +.+..+++|+.+.|+.+++.....  ++
T Consensus        11 TnLGRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~lt--gAeaA~VvNnnaAAv~L~l~~la~--~~   86 (367)
T PF03841_consen   11 TNLGRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELT--GAEAALVVNNNAAAVLLALNTLAK--GK   86 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc--cc
Confidence            456654  4778888877665431100   0000001 123444555555  346678889988888887764322  33


Q ss_pred             ceEEEEcCCcccccccccccccCCCcccc--ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE-EEc
Q 011669          185 NDIISLRNAYHGNAAGTMGATAQSNWKFN--VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF-LSE  261 (480)
Q Consensus       185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~--~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v-i~e  261 (480)
                       +||+..|---       -. + ..++.+  +...|...+.+-.        ......+|++++|.    ++++++ .+-
T Consensus        87 -EvIvsRGelV-------ei-G-gsFRip~vm~~sGa~lvEVGt--------tN~t~~~Dye~AI~----e~Ta~ll~Vh  144 (367)
T PF03841_consen   87 -EVIVSRGELV-------EI-G-GSFRIPDVMRQSGARLVEVGT--------TNRTHLSDYEKAIT----ENTAALLKVH  144 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -cccccccccc-------cc-c-ccccccccccccccccccccc--------cccccccccccccc----cccccccccc
Confidence             4444332210       00 0 011111  1113333332211        11222567788875    356555 444


Q ss_pred             c----cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC------ccccCCCcccccccCCCcceeeec--cccccC
Q 011669          262 S----IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG------FARTGSHFWGFEAHGVVPDIVTMA--KGIGNG  329 (480)
Q Consensus       262 p----i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg------fgr~G~~~~~~~~~~~~pDivt~s--K~~g~G  329 (480)
                      +    ++|-.+.+ +    ++++.+++++||+++|.|---..      +|..+ +.-..+......|+||||  |-+||.
T Consensus       145 ~Sn~~i~GFt~~~-~----~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~-Ep~v~~~~~~GaDlV~fSGdKlLGGP  218 (367)
T PF03841_consen  145 TSNFRIQGFTGEV-S----LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPD-EPTVQEYLAAGADLVTFSGDKLLGGP  218 (367)
T ss_dssp             ---------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCCCT-SEEEEETTSSSSS-
T ss_pred             ccccccccccccc-c----HHHHHHHHhhcCCcEEEECCCCCCcCcccccCcc-ccHHHHHhhcCCCEEEEECCCcCCCC
Confidence            2    23333333 2    89999999999999999965311      12222 111123344568999998  777653


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~  372 (480)
                       ..|.+++++++++.++.....-.+-..-+..++..++|+...
T Consensus       219 -QaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~  260 (367)
T PF03841_consen  219 -QAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYL  260 (367)
T ss_dssp             -S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH--
T ss_pred             -CeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHH
Confidence             468899999999988764444455567788888888887654

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.29  E-value=0.00015  Score=73.32  Aligned_cols=276  Identities=19%  Similarity=0.218  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCC-ceEEEEcCCcccccccccccccCCCccccccCCCee
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC-NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH  220 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~-~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~  220 (480)
                      .+-++-..++++.+-+.-++-+-.+++.+-|+++.+.|....+ ++|++.+ +-|+.+..++.....        ..|+.
T Consensus       111 ~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~-~~hP~~~~v~~t~a~--------~~g~~  181 (429)
T PF02347_consen  111 ALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPE-SLHPQTRAVLRTYAA--------PLGIE  181 (429)
T ss_dssp             HHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEET-TS-CHHHHHHHHHCC--------HCCEE
T ss_pred             HHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcC-CcChhhHHHHHHhhh--------hCCeE
Confidence            4567888888888433222234456666666554444443332 3666654 456655554432211        12555


Q ss_pred             EecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc----
Q 011669          221 HALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV----  296 (480)
Q Consensus       221 ~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv----  296 (480)
                      .+..+....+   .+      +         .+++++|++...+.- |.+..    +++|.++++++|+++|+ -+    
T Consensus       182 iv~~~~~~~~---~~------d---------~~~~a~v~vq~Pn~~-G~~ed----~~~i~~~~h~~gal~~~-~ad~~a  237 (429)
T PF02347_consen  182 IVEVPLDEDG---TT------D---------DDDTAAVMVQNPNTF-GVFED----IKEIADIAHAAGALVIV-GADPNA  237 (429)
T ss_dssp             EEEE-BBTTC---SB----------------STTEEEEEEESS-TT-SB--T----HHHHHHHHHHTT-EEEE-CGGCCG
T ss_pred             EEEecccccC---Cc------c---------ccCeEEEEeecCCCC-ceEee----HHHHHHHHHHcCCEEEE-ecCHHH
Confidence            5544321100   00      1         358999999876644 55543    99999999999999986 22    


Q ss_pred             ccCccccCCCcccccccCCCcceee-eccccc-----cCccccccccCHHHHHhhcCCCc--------------------
Q 011669          297 QAGFARTGSHFWGFEAHGVVPDIVT-MAKGIG-----NGIPLGAVVTTPEIAEVLTRRNY--------------------  350 (480)
Q Consensus       297 ~tgfgr~G~~~~~~~~~~~~pDivt-~sK~~g-----~G~pig~v~~~~~~~~~l~~~~~--------------------  350 (480)
                      ..++-+.|       .+  ..||++ .+|.||     ||--.|++.++++++..+-.+..                    
T Consensus       238 L~~l~~Pg-------e~--GADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtRE  308 (429)
T PF02347_consen  238 LGGLKSPG-------EY--GADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTRE  308 (429)
T ss_dssp             CCTC--GG-------GG--T-SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGT
T ss_pred             HhCcCChh-------hc--CccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeecccccc
Confidence            11111111       12  346663 356665     45668889999988776643211                    


Q ss_pred             --------cccCCCcHHHHH-HHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecC
Q 011669          351 --------FNTFGGNPVCTA-AGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD  418 (480)
Q Consensus       351 --------~~t~~~~~~~~a-aa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~  418 (480)
                              .+.++.|..-++ ++..-+..+-.+   ++.+++..+..++.++|.++ -..+.    .+.-++-.+.. ..
T Consensus       309 QHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~-~~~~~----~~~~f~e~v~~-~~  382 (429)
T PF02347_consen  309 QHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI-YGLPF----DNPFFFEFVVV-FS  382 (429)
T ss_dssp             CHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TBECS----SSSSBSSEEEE-ES
T ss_pred             ccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh-cCccc----CCCCceeeeee-cC
Confidence                    133444543333 222223333333   34566667777888887775 11111    11111111111 11


Q ss_pred             CCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          419 RQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       419 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                           +. ....++.+.+...|+.....  ..+.+-+++-=..|++|||.++++|
T Consensus       383 -----~~-~~~~~l~~~~~~~gl~~~~~--~~~~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  383 -----KD-KEVEELLKRGIEGGLNLRYP--DDGALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             -----S--HHHHHHHHTT----EEEGGG---SSEEEEE--TT--HHHHHHHHH--
T ss_pred             -----Cc-HHHHHHHHHHHhcCCCcccc--CCCeEEEEccCCCCHHHHHHHHhcC
Confidence                 11 23344666666667444322  2457889988889999999999875

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.25  E-value=0.00023  Score=67.18  Aligned_cols=333  Identities=18%  Similarity=0.117  Sum_probs=179.8

Q ss_pred             ccCCCCCHHHHHHHHHHHHhc------cccccccCCh-HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc-
Q 011669          111 VCCGHCHPYVVDSIVNQIKRI------QHSTVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT-  182 (480)
Q Consensus       111 ~~lGh~~p~v~~A~~~~~~~~------~~~~~~~~~~-~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~-  182 (480)
                      ++||--+..+.+.+.+.+++-      +|...--+.- .-+.+...++...+...++|-++||=|--+...|-...+-| 
T Consensus        74 NSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTe  153 (465)
T KOG3846|consen   74 NSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTE  153 (465)
T ss_pred             cccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcc
Confidence            467877777888888777752      2322111100 01223344555566666778888887744443333333333 


Q ss_pred             CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHH--HHHHHHHHHHccCCCceEEEEE
Q 011669          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM--YAKDVQDLIDFGTSGHVAGFLS  260 (480)
Q Consensus       183 ~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~--~~~~le~~i~~~~~~~~a~vi~  260 (480)
                      .|.+|+.-..+|.....+.-+-......   .+...+..+. |   |     .++.  -.+++-+.|+.. .+.+|.|+.
T Consensus       154 kR~KILlE~kaFPSDhYAiesQ~~lhG~---~~e~sm~~ie-P---R-----EGEetlRteDILd~IEkn-gDeiA~v~f  220 (465)
T KOG3846|consen  154 KRFKILLEKKAFPSDHYAIESQCKLHGI---SPENSMIQIE-P---R-----EGEETLRTEDILDTIEKN-GDEIALVCF  220 (465)
T ss_pred             hhhhhhhccCCCCchHHHHHhhhhhcCC---ChHHheEEec-c---c-----ccccchhHHHHHHHHHhc-CCeEEEEEe
Confidence            3567777777775544433222110000   0001111111 1   1     1111  135666667654 458999999


Q ss_pred             cccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--ccccccC-cccccccc
Q 011669          261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNG-IPLGAVVT  337 (480)
Q Consensus       261 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g~G-~pig~v~~  337 (480)
                      ..+|--+|....    +.+|-..-+..|+++=.|=++. +|...     .+.++...|+.|.  =|-+.+| =.||.+.+
T Consensus       221 SGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vgNVp-----L~LHdWgVDFACWCSYKYlnaGaGgIgGlFv  290 (465)
T KOG3846|consen  221 SGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VGNVP-----LQLHDWGVDFACWCSYKYLNAGAGGIGGLFV  290 (465)
T ss_pred             ecceeecccccc----hhhhhhcccCCCcEechhhhhh-hcCCc-----eEEeecCCceEEEeeecccccCCCccceeee
Confidence            999988887765    6666655556788888998876 54332     2223334566653  3777644 24565555


Q ss_pred             CHHHHHhhcCC------------------------CccccCCCcHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011669          338 TPEIAEVLTRR------------------------NYFNTFGGNPV-CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       338 ~~~~~~~l~~~------------------------~~~~t~~~~~~-~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~  392 (480)
                      .++......++                        ..+.-.+.+|+ ..++..+.|++...-+ .++++...-++-.-|+
T Consensus       291 Hekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~-~~~lRkrS~lLTgYle  369 (465)
T KOG3846|consen  291 HEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN-INELRKRSLLLTGYLE  369 (465)
T ss_pred             ehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh-HHHHhhhhhhHHhHHH
Confidence            44432211111                        01111222333 3444556677665433 3334443333333333


Q ss_pred             HhHHhc-----Cc-----------eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEe
Q 011669          393 ALKDKY-----GI-----------IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRIT  456 (480)
Q Consensus       393 ~l~~~~-----~~-----------~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~  456 (480)
                      .+.+..     +.           +..+..+|.-+.+.|..+          ...+.+.|.++|++.-..  ..|.||+.
T Consensus       370 yL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp----------~~~vfqeL~krGv~~DkR--~PNvIRvA  437 (465)
T KOG3846|consen  370 YLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSP----------TPKVFQELHKRGVIGDKR--RPNVIRVA  437 (465)
T ss_pred             HHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCC----------chHHHHHHHHcCeecccc--CCCceEee
Confidence            332211     10           012344566566655432          356889999999998653  36889998


Q ss_pred             C-CCCCCHHHHHHHHHHHHHHHhh
Q 011669          457 P-PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       457 p-~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      | |+..+-.|+-.++.+|.+++..
T Consensus       438 PvpLYN~f~Dvy~f~n~L~e~~d~  461 (465)
T KOG3846|consen  438 PVPLYNTFSDVYIFVNALNEAMDK  461 (465)
T ss_pred             cchhhccHHHHHHHHHHHHHHHHH
Confidence            7 4778999999999999998754

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=98.20  E-value=0.00036  Score=72.27  Aligned_cols=173  Identities=14%  Similarity=0.144  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccC-CCccccccCCCe
Q 011669          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ-SNWKFNVVQTGV  219 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~~~g~  219 (480)
                      ..+.+..|..++.++.+ ...|.+||-|.||...+..+..  .+++|++-+++ |-+....+-+++. +.|-.+.     
T Consensus        70 G~i~eAqe~aA~~fgAd-~tyFvvNGTS~ank~vi~a~~~--~GD~VLvdRN~-HKSi~~glilaGa~Pvyl~p~-----  140 (557)
T COG1982          70 GPIKEAQELAARVFGAD-HTYFVVNGTSTANKAVINAVLT--PGDKVLVDRNC-HKSIHHGLILAGATPVYLEPS-----  140 (557)
T ss_pred             ccHHHHHHHHHHHhCCC-ceEEEECCccHHHHHHHHhhcC--CCCEEEecCCc-cHHHHHHHHHcCCceEEecCC-----
Confidence            34455555556666543 4567788888888887775443  66777776666 4444444555543 3222211     


Q ss_pred             eEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC
Q 011669          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG  299 (480)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg  299 (480)
                           .++.   |+--.....+.+++.+.++...+..+|+.+|..  .|..-.    +++|.+.+.++++++.+||.+--
T Consensus       141 -----~np~---~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah~~  206 (557)
T COG1982         141 -----RNPL---YGIIGGIPLETFKEALLAHPDAEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAHPA  206 (557)
T ss_pred             -----CCcc---ccccCCCCHHHHHHHHHhChhhheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcCcc
Confidence                 1110   111000114566655544322225677777643  355554    89999999999999999998742


Q ss_pred             -ccccCCCcccccccCCCcceeeec--cccccCccccccccC
Q 011669          300 -FARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT  338 (480)
Q Consensus       300 -fgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~  338 (480)
                       ++..+  ...-.......|++|-|  |.+++.--.+.+-.+
T Consensus       207 ~~~~~~--~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~  246 (557)
T COG1982         207 HFDFSP--MLPESALNGGADFVTQSTHKLLAALSQASMIHVK  246 (557)
T ss_pred             cccccc--cCcchhhhcCceEEEechhhhhhhhhhhHHHhhC
Confidence             12222  11111222345777777  555443233344444

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=98.15  E-value=0.0001  Score=71.57  Aligned_cols=207  Identities=16%  Similarity=0.191  Sum_probs=114.6

Q ss_pred             CCHHHHHHHHHH-HHhc--ccccc-ccCChHHHHHHHHHHHhCCCCCCEEEE---eCCHHHHHHHHHHHHHhhcCCceEE
Q 011669          116 CHPYVVDSIVNQ-IKRI--QHSTV-LYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII  188 (480)
Q Consensus       116 ~~p~v~~A~~~~-~~~~--~~~~~-~~~~~~~~~l~e~L~~~~~~~~~~v~f---~~sGseA~~~Alk~ar~~~~~~~ii  188 (480)
                      |..+|++|+++. +...  ..++. .|....+..|.+-.++.++.  +..++   ..|||.|+..+|.....  ++++++
T Consensus        25 Nq~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfga--E~ALVRpq~vSGTHAi~~~Lfg~Lr--pGD~ll  100 (403)
T PF06838_consen   25 NQLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGA--EDALVRPQFVSGTHAIALALFGVLR--PGDELL  100 (403)
T ss_dssp             HHHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT---SEEEEETTS-SHHHHHHHHHHHH----TT-EEE
T ss_pred             HHHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCc--hhhhhcccccchHHHHHHHHHhcCC--CCCeEE
Confidence            445777777652 2211  11222 23456778888889999964  44444   35999999999986554  788888


Q ss_pred             EEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCc
Q 011669          189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGG  268 (480)
Q Consensus       189 ~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G  268 (480)
                      +..|.=.-....++.+.++.  .-.+...|+..-.++..      +|+....+.+++.++    .++++|.+--   +.|
T Consensus       101 ~~tG~PYDTL~~VIG~~g~~--~GSL~e~Gi~Y~~v~L~------~dg~~D~~~i~~~~~----~~tk~v~IQR---SrG  165 (403)
T PF06838_consen  101 SITGKPYDTLEEVIGIRGNG--PGSLKEFGIKYREVPLT------EDGTIDWEAIKKALK----PNTKMVLIQR---SRG  165 (403)
T ss_dssp             ESSSS--CCHHHHHTSSSSS--SSSTGGGT-EEEE--B-------TTSSB-HHHHHHHHH----TTEEEEEEE----S-T
T ss_pred             EcCCCchhhHHHHhCCCCCC--CCChHHhCceeEEEeec------CCCCcCHHHHHHhhc----cCceEEEEec---CCC
Confidence            77655433333444444431  11112235544333322      222222678888886    3778887643   334


Q ss_pred             cee---CCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCc-cc-cccccCH
Q 011669          269 IIE---LAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGI-PL-GAVVTTP  339 (480)
Q Consensus       269 ~~~---~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~-pi-g~v~~~~  339 (480)
                      .-.   .+-+.++++.+++|+  -++++.+|..|..|--+-      +-..+-.|++  ++=|..|||+ |. |||++++
T Consensus       166 Ys~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~------EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~  239 (403)
T PF06838_consen  166 YSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ------EPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRK  239 (403)
T ss_dssp             TSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-------GGGGT-SEEEEETTSGGGTTT-SS-EEEEESH
T ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc------CccccchhheeccceeCCCCCccCcCCEEechH
Confidence            332   222345555555555  389999999998874332      3334567877  5669999995 54 5899999


Q ss_pred             HHHHhhcC
Q 011669          340 EIAEVLTR  347 (480)
Q Consensus       340 ~~~~~l~~  347 (480)
                      ++++....
T Consensus       240 ~lVe~~a~  247 (403)
T PF06838_consen  240 DLVERAAY  247 (403)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99887643

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.13  E-value=0.001  Score=65.93  Aligned_cols=227  Identities=13%  Similarity=0.121  Sum_probs=116.3

Q ss_pred             HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc---ccCCC
Q 011669          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE---AHGVV  316 (480)
Q Consensus       240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~---~~~~~  316 (480)
                      .+.+|+.++..+++.+.+|+ .......|..   ++-+++|.++|++|||..|+.-+|+ .- ......-.+   ..|..
T Consensus       141 ~~~ie~~i~~~G~~~iLcvl-tttscfapr~---~D~i~~IakiC~~~~IPhlvNnAYg-vQ-~~~~~~~i~~a~~~GRv  214 (389)
T PF05889_consen  141 LEAIEAKIEELGADNILCVL-TTTSCFAPRL---PDDIEEIAKICKEYDIPHLVNNAYG-VQ-SSKCMHLIQQAWRVGRV  214 (389)
T ss_dssp             HHHHHHHHHHHCGGGEEEEE-EESSTTTTB-------HHHHHHHHHHHT--EEEEGTTT-TT--HHHHHHHHHHHHHSTC
T ss_pred             HHHHHHHHHHhCCCCeEEEE-EecCccCCCC---CccHHHHHHHHHHcCCceEEccchh-hh-HHHHHHHHHHHHhcCCc
Confidence            46777777765444455554 4444444433   2359999999999999999999985 40 000000000   12332


Q ss_pred             c-ceeeeccccccCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Q 011669          317 P-DIVTMAKGIGNGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERL  391 (480)
Q Consensus       317 p-Divt~sK~~g~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L  391 (480)
                      | ++-+..|-|=-|..-+-+.+ .+..+..+...-.+-.+..+.+-.   ...|..+-.   ..+.....+...+++++|
T Consensus       215 da~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpGRas~sp~ld~---~itLl~LG~~g~~~ll~~r~~~f~~l~erl  291 (389)
T PF05889_consen  215 DAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPGRASASPSLDL---FITLLSLGCTGYGALLKERKASFPYLKERL  291 (389)
T ss_dssp             SEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhhhhhcccchHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            2 22245565531111112222 344555554321111222222222   222222222   345666777888999999


Q ss_pred             HHhHHhcCc-eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCcee----eccCc---------CCCEEEEeC
Q 011669          392 TALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLV----GKGGF---------YGNVFRITP  457 (480)
Q Consensus       392 ~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v----~~~~~---------~~~~iRi~p  457 (480)
                      +++.++++. +.+.+..-..+.+++..-....  . ...-.+...|..+||.=    .+.+.         ...++-++-
T Consensus       292 ~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~--~-k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~As  368 (389)
T PF05889_consen  292 KKWAEEVGERLLETPRNHISMAFTLDTLYEIS--Q-KDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAAS  368 (389)
T ss_dssp             HHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCC--S-SHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE
T ss_pred             HHHHHHhhhhhcCCCCCCeeEEEECccchhhc--c-chhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHH
Confidence            999988852 3344333444556653221111  1 23456788888887652    22111         115677766


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 011669          458 PLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+.+++||||.++++|+++++
T Consensus       369 aiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  369 AIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             -TT--HHHHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHhC
Confidence            788999999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=97.98  E-value=0.0059  Score=59.57  Aligned_cols=194  Identities=18%  Similarity=0.146  Sum_probs=116.8

Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeeec--ccccc-Cc
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGN-GI  330 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~s--K~~g~-G~  330 (480)
                      .+-|..-++....|+-.+...+.      ..  +.++|+|-.-.-|+|.         .++ .-|++.+|  |.+|+ | 
T Consensus       145 ~ayv~~~~NeTi~Gv~v~~~p~~------~~--~~~~v~D~SS~ilsr~---------iDvsk~dviyagaQKnlGpaG-  206 (365)
T COG1932         145 DAYVHFCWNETISGVEVPELPDI------GS--DGLLVADASSAILSRP---------IDVSKYDVIYAGAQKNLGPAG-  206 (365)
T ss_pred             ccEEEEecCCcccceEccCCCCC------CC--CceEEEecccHHhcCC---------CChhHcceEEEehhhccCccc-
Confidence            33355545555556655432221      11  2788999654433331         122 34678776  99994 7 


Q ss_pred             cccccccCHHHHHhhcCC------------CccccCCCcHH-HHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHH
Q 011669          331 PLGAVVTTPEIAEVLTRR------------NYFNTFGGNPV-CTAAGHAVLKVIQKDK----LQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       331 pig~v~~~~~~~~~l~~~------------~~~~t~~~~~~-~~aaa~a~L~~i~~~~----~~~~~~~~~~~l~~~L~~  393 (480)
                       ++.++.++++.+++...            ...++|+.+|. +......+++.+++.+    +.++-++..+.|.+.+.+
T Consensus       207 -ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~  285 (365)
T COG1932         207 -LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDK  285 (365)
T ss_pred             -eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence             78899999998877553            13467776654 4555667788887643    444444445555554443


Q ss_pred             hHHhcCcee---eEeccceeE-EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHH
Q 011669          394 LKDKYGIIG---DVRGRGFLL-GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       394 l~~~~~~~~---~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~  469 (480)
                          .+...   ....+..|. .|.+.        +......+...+.++|+..-.|-.-.+-+|++.--++..++++.+
T Consensus       286 ----s~fy~~~v~~~~RS~mnV~f~~~--------~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL  353 (365)
T COG1932         286 ----SDFYRNLVAKANRSRMNVTFTLV--------DAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEAL  353 (365)
T ss_pred             ----CCccccccchhhccceeEEEEcC--------cHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHH
Confidence                33221   113333443 34442        233456788888899988766632223389998888999999999


Q ss_pred             HHHHHHHHhh
Q 011669          470 VDVMDYSLSK  479 (480)
Q Consensus       470 l~~l~~~l~~  479 (480)
                      ++-++.+.++
T Consensus       354 ~~fm~~f~~~  363 (365)
T COG1932         354 TDFMDWFEET  363 (365)
T ss_pred             HHHHHHHHHh
Confidence            9999887653

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.96  E-value=0.0016  Score=67.36  Aligned_cols=301  Identities=19%  Similarity=0.289  Sum_probs=172.6

Q ss_pred             hHHHHHHHHHHHhCCCCCCEE-EEeCCHHHHHHHHHHHHHhhc-----CCceEEEEcCCcccccccccccccCCCccccc
Q 011669          141 HAIADFAEALASKMPGNLKVV-FFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v-~f~~sGseA~~~Alk~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ....+|.+.|++..+  .+.+ +--|||...-.+.++..|.|.     +...|...--+-||...+.....         
T Consensus       582 ~lf~~Le~~Lc~iTG--~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Ma---------  650 (1001)
T KOG2040|consen  582 QLFTELEKDLCEITG--FDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMA---------  650 (1001)
T ss_pred             HHHHHHHHHhheeec--ccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhc---------
Confidence            344678888888874  4444 446899999888898888873     22345445567788666554443         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                         |...+++...-.+..  |    ..+|+...+++ .++.+++++.-. +.-|+..+   -++++.++.++||.-+..|
T Consensus       651 ---gmkvvpV~~~~~G~i--d----~~dLk~kaekh-~~~Laa~MvTYP-ST~GvfE~---~i~d~cd~iHehGGQVYlD  716 (1001)
T KOG2040|consen  651 ---GMKVVPVGCDANGNI--D----MVDLKAKAEKH-KDNLAALMVTYP-STHGVFEE---GIDDICDIIHEHGGQVYLD  716 (1001)
T ss_pred             ---CCEEEEeeccCCCCc--c----HHHHHHHHHHh-hhhhheeEEecc-cccccccc---cHHHHHHHHHhcCCEEEec
Confidence               333343322211111  2    56777666654 457777777533 33455432   3899999999999999999


Q ss_pred             c----cccCccccCCCccccc--ccCCCcceeeecccccc-CccccccccCHHHHHhhcCCC-----------ccccCC-
Q 011669          295 E----VQAGFARTGSHFWGFE--AHGVVPDIVTMAKGIGN-GIPLGAVVTTPEIAEVLTRRN-----------YFNTFG-  355 (480)
Q Consensus       295 E----v~tgfgr~G~~~~~~~--~~~~~pDivt~sK~~g~-G~pig~v~~~~~~~~~l~~~~-----------~~~t~~-  355 (480)
                      -    +|-|+-|.| .+ +.+  +.++.   -||.=.-|| |-.+|-+.+++.++..+....           ..++.+ 
T Consensus       717 GANMNAqVGlc~pG-d~-GaDV~HLNLH---KTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsa  791 (1001)
T KOG2040|consen  717 GANMNAQVGLCRPG-DI-GADVCHLNLH---KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSA  791 (1001)
T ss_pred             CCCccceecccCCc-cc-cccceeeccc---ceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceec
Confidence            6    477777766 22 211  11111   033333343 567788888888776554311           112222 


Q ss_pred             ---CcHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecC-CCcCCCCHHH
Q 011669          356 ---GNPVCTAAGHAVLKVIQKDKLQNN---AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD-RQLKTPAKAE  428 (480)
Q Consensus       356 ---~~~~~~aaa~a~L~~i~~~~~~~~---~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~-~~~~~~~~~~  428 (480)
                         |+..-....++-++.+-...+.+.   ..-+..|+.++|+.   .|.++. ....| .++-+|.-+ +.-+.....+
T Consensus       792 aP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~---hYkil~-~~~~~-~vaHEFIlD~r~fK~~agie  866 (1001)
T KOG2040|consen  792 APWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLES---HYKILF-RGENG-LVAHEFILDLRPFKKTAGIE  866 (1001)
T ss_pred             cCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhh---ccceeE-ecCCc-ceeeeeeeechhhccccCCc
Confidence               223333445566666654443322   22235566666655   344331 11222 344444322 2222223345


Q ss_pred             HHHHHHHHHHcCceeeccC-cCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          429 TLYIMDKMKEMGVLVGKGG-FYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       429 ~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      +..+++.|.+.|....+-. +-.+++-|-|.-.-+++|+|++++++-.+
T Consensus       867 avDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSI  915 (1001)
T KOG2040|consen  867 AVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISI  915 (1001)
T ss_pred             HHHHHHHHHhccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHH
Confidence            6779999999998754321 12367888888778899999999988544

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=97.95  E-value=0.00048  Score=66.12  Aligned_cols=226  Identities=21%  Similarity=0.207  Sum_probs=120.4

Q ss_pred             CeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCCCC---
Q 011669           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGN---  157 (480)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~~---  157 (480)
                      |.-+.=|-|.| .|.+|+.|+=              |.|.+|=++.+.+. . .-.| +-....++.+.-+++.-++   
T Consensus        52 ~~KiNLgvGaY-Rdd~gKp~vL--------------~~VrkAE~ql~~~~-l-dKEYlpI~Gl~eF~k~sakLa~G~~s~  114 (427)
T KOG1411|consen   52 PKKINLGVGAY-RDDNGKPYVL--------------PSVRKAEQQLASLS-L-DKEYLPITGLAEFNKLSAKLALGDNSP  114 (427)
T ss_pred             cceeeecccce-ecCCCCeeee--------------HHHHHHHHHHhhhc-c-cchhccccchHHHHHHHHHHhhcCCch
Confidence            55566788887 5888887752              67777655433321 0 1112 2334455655555543211   


Q ss_pred             ---CCEEEE--eCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          158 ---LKVVFF--TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       158 ---~~~v~f--~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                         .+++.+  +-|||-|+..+-.....+-+..+|.+.+|.+ |.........+.+          +....+-++.  ..
T Consensus       115 ~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTW-gNh~~if~~ag~~----------~~~yrYyd~~--t~  181 (427)
T KOG1411|consen  115 VIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTW-GNHKNIFKDAGLP----------VKFYRYYDPK--TR  181 (427)
T ss_pred             hhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcc-cccCccccccCcc----------eeeeeecccc--cc
Confidence               123433  4588888887776544444566788888887 3222222222211          1111110110  01


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEc-ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc--
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG--  309 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~--  309 (480)
                      +-|-...++++.++     ++.- .|++- ..++++|+ .|.++-+++|.++.++.+.+-++|-+|.||. .| .+..  
T Consensus       182 gld~~g~ledl~~~-----p~gs-~ilLhaCaHNPTGv-DPt~eqw~ki~~~~~~k~~~pffDmAYQGfa-SG-~~d~DA  252 (427)
T KOG1411|consen  182 GLDFKGMLEDLGEA-----PEGS-IILLHACAHNPTGV-DPTKEQWEKISDLIKEKNLLPFFDMAYQGFA-SG-DLDKDA  252 (427)
T ss_pred             ccchHHHHHHHhcC-----CCCc-EEEeehhhcCCCCC-CccHHHHHHHHHHhhhccccchhhhhhcccc-cC-CchhhH
Confidence            11222222333221     2222 33333 36677775 5788899999999999999999999999994 45 2211  


Q ss_pred             --c---cccCCCcce-eeeccccc-cCcccccc---ccCHHHHHhhc
Q 011669          310 --F---EAHGVVPDI-VTMAKGIG-NGIPLGAV---VTTPEIAEVLT  346 (480)
Q Consensus       310 --~---~~~~~~pDi-vt~sK~~g-~G~pig~v---~~~~~~~~~l~  346 (480)
                        .   ...|...-+ -+++|.+| -|=|+|++   +-+++.+..+.
T Consensus       253 ~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~  299 (427)
T KOG1411|consen  253 QAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVE  299 (427)
T ss_pred             HHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHH
Confidence              1   111221111 16889998 46677754   34455554443

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=97.89  E-value=0.00053  Score=64.93  Aligned_cols=194  Identities=17%  Similarity=0.236  Sum_probs=106.6

Q ss_pred             ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC---Ccccccc---cCCCccee--eeccccc-cCccc
Q 011669          262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS---HFWGFEA---HGVVPDIV--TMAKGIG-NGIPL  332 (480)
Q Consensus       262 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~---~~~~~~~---~~~~pDiv--t~sK~~g-~G~pi  332 (480)
                      ..++++|+- |+.+-+++|.+..++.+.+-.+|-+|.||. +|.   .-|+...   .| .+-++  +|+|.+| -|-|+
T Consensus       186 CAhNPTGmD-PT~EQW~qia~vik~k~lf~fFDiAYQGfA-SGD~~~DawAiR~fV~~g-~e~fv~QSFaKNfGlYneRv  262 (410)
T KOG1412|consen  186 CAHNPTGMD-PTREQWKQIADVIKSKNLFPFFDIAYQGFA-SGDLDADAWAIRYFVEQG-FELFVCQSFAKNFGLYNERV  262 (410)
T ss_pred             cccCCCCCC-CCHHHHHHHHHHHHhcCceeeeehhhcccc-cCCccccHHHHHHHHhcC-CeEEEEhhhhhhcccccccc
Confidence            357888864 688889999999999999999999999994 441   2343322   23 22233  6899998 46677


Q ss_pred             cc---cccCHHHHHhhcCCC---ccccCCC-cHHHHHHHHHHHHHhh-hhHHHH-------HHHHHHHHHHHHHHHhHHh
Q 011669          333 GA---VVTTPEIAEVLTRRN---YFNTFGG-NPVCTAAGHAVLKVIQ-KDKLQN-------NAHVVGSYLKERLTALKDK  397 (480)
Q Consensus       333 g~---v~~~~~~~~~l~~~~---~~~t~~~-~~~~~aaa~a~L~~i~-~~~~~~-------~~~~~~~~l~~~L~~l~~~  397 (480)
                      |-   |+-.+..+..+....   .-.+++. +..+......+|+.-+ .++|.+       ++.+++..|++.|..|  +
T Consensus       263 Gnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL--~  340 (410)
T KOG1412|consen  263 GNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVAL--K  340 (410)
T ss_pred             cceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence            73   333455544433211   1234433 2334444445553211 133443       4444555555555554  2


Q ss_pred             cCcee-e-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          398 YGIIG-D-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       398 ~~~~~-~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      -|.-+ . ++..|+|-.--+.            ...+-....++.|++.+.|      ||+.+ ..+...+|....+|++
T Consensus       341 TPGtWDHI~~QiGMFSyTGLt------------p~qV~~li~~h~vyLl~~G------RInis-GLN~~NveyVAkAIde  401 (410)
T KOG1412|consen  341 TPGTWDHITQQIGMFSYTGLT------------PAQVDHLIENHKVYLLSDG------RINIS-GLNMKNVEYVAKAIDE  401 (410)
T ss_pred             CCCcHHHHHhhccceeecCCC------------HHHHHHHHHhceEEEecCC------cEeee-ccccccHHHHHHHHHH
Confidence            22211 1 3444544322110            1223333345678887654      44433 4456678888888888


Q ss_pred             HHhh
Q 011669          476 SLSK  479 (480)
Q Consensus       476 ~l~~  479 (480)
                      +++.
T Consensus       402 ~Vr~  405 (410)
T KOG1412|consen  402 TVRA  405 (410)
T ss_pred             HHHh
Confidence            7654

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=97.77  E-value=0.0059  Score=61.17  Aligned_cols=320  Identities=17%  Similarity=0.157  Sum_probs=159.5

Q ss_pred             CHHHHHHHHHHHHhc--cccccccC--ChHHHHHHHHHHHhCCCCCC-EEEEeCCHHHHHHHHHHHHHhhcC------Cc
Q 011669          117 HPYVVDSIVNQIKRI--QHSTVLYL--NHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTG------CN  185 (480)
Q Consensus       117 ~p~v~~A~~~~~~~~--~~~~~~~~--~~~~~~l~e~L~~~~~~~~~-~v~f~~sGseA~~~Alk~ar~~~~------~~  185 (480)
                      +|+..+-+.+.+.++  .| ...|+  .....+....++.+++++.+ -=.-|.+||||..++.|..+....      +.
T Consensus        93 ~~~~~~l~~~~~~k~N~l~-~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p  171 (491)
T KOG1383|consen   93 EPELDKLIMEAYNKFNPLH-PDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKP  171 (491)
T ss_pred             CcchhhHHHHHHhhcCccC-ccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCc
Confidence            455555555555543  11 11222  23445666667777765533 124567999998888876544321      12


Q ss_pred             eEEEEcCCcccccccccccccCCCccccccCCCee--EecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEccc
Q 011669          186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH--HALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI  263 (480)
Q Consensus       186 ~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~--~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi  263 (480)
                      .|++.....-++-..        ...     .++.  .+++..   +.|.-|    ...+.+.++    +++.+++.+-.
T Consensus       172 ~iv~~~~v~~a~eK~--------a~y-----f~v~l~~V~~~~---~~~~~D----~~k~~~~i~----eNti~lv~~~~  227 (491)
T KOG1383|consen  172 NIVTPQNVHAAFEKA--------ARY-----FEVELREVPLDE---GDYRVD----PGKVVRMID----ENTIMLVGSLP  227 (491)
T ss_pred             cccchHHHHHHHHHH--------Hhh-----EEEEEEeeeccc---cceEec----HHHHHHHhc----cceEEEEEEcC
Confidence            333322111000000        001     1222  222210   111122    455556664    47888888887


Q ss_pred             CCCCcceeCCCChHHHHHHHHHH-hCCEEEEcccccCcccc-C---CCcccccccCCCcceeeeccccc-cCcccccccc
Q 011669          264 QGVGGIIELAPGYLPAVYKSIKK-AGGLCIADEVQAGFART-G---SHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVT  337 (480)
Q Consensus       264 ~~~~G~~~~~~~~l~~l~~l~~~-~gillI~DEv~tgfgr~-G---~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v~~  337 (480)
                      +-+.|.+.+    +++|.++..| +++.+.+|..-.||--. +   ...|.|...++ +.+.+-+--+| .--.++|++-
T Consensus       228 ~~p~G~~e~----ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V-~Sisa~~HKYGl~~~G~~~vl~  302 (491)
T KOG1383|consen  228 NFPTGEIED----VEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGV-TSISADGHKYGLAPAGSSWVLY  302 (491)
T ss_pred             CCCccchhh----HHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCc-eeEeeccceeeeeecCcEEEEE
Confidence            777787766    9999999999 99999999999888432 2   11233332222 22333331122 1113467775


Q ss_pred             CH-HHH-HhhcC-----CCcc--ccCCCc--HHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHhHHhcCceee
Q 011669          338 TP-EIA-EVLTR-----RNYF--NTFGGN--PVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTALKDKYGIIGD  403 (480)
Q Consensus       338 ~~-~~~-~~l~~-----~~~~--~t~~~~--~~~~aaa~a~L~~i~~~~~~---~~~~~~~~~l~~~L~~l~~~~~~~~~  403 (480)
                      +. ++. ..+.-     +...  .|.+++  ..-.++.++++=.+-.+++.   +++.+....+++++++.. .+.    
T Consensus       303 r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~-~i~----  377 (491)
T KOG1383|consen  303 RNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIK-GIK----  377 (491)
T ss_pred             cccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccc-cce----
Confidence            43 322 11110     1111  233332  23344455555444455444   455556667777777742 111    


Q ss_pred             EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHH-HHHHHHHHHHHHhh
Q 011669          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKED-ADYLVDVMDYSLSK  479 (480)
Q Consensus       404 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~-id~~l~~l~~~l~~  479 (480)
                      +-|...+..+-+.+..       ...-++.+.|.+.|..+-.- .+...+.|+.-..+..++ .|+++.-|++++.+
T Consensus       378 i~gkp~vs~~~~~s~~-------~~i~elsd~l~~~GW~lnal-q~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~e  446 (491)
T KOG1383|consen  378 IVGKPLVSFILFGSND-------VNIFELSDLLRKKGWILNAL-QFPAAIHICVTRVHAREDVADRFVADIRKVVEE  446 (491)
T ss_pred             ecCCCcEEEEEccCCc-------cchhhhhHHHHhcCcCcccc-CCCCceEEEEEeeeccHHHHHHHHHHHHHHHHH
Confidence            2222333222222111       22456788899999887432 122233344334444444 57788888877764

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.62  E-value=0.027  Score=62.38  Aligned_cols=272  Identities=15%  Similarity=0.144  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcC--CceEEEEcCCcccccccccccccCCCccccccCCCe
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG--CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~--~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~  219 (480)
                      .+-++-..++++++-+..+.-.-..+|.+-| |+.+++.+++  +.++++ +.+-|-.+..++....        ...|+
T Consensus       125 al~e~Qtmi~~LtGm~vaNASl~D~atA~aE-A~~ma~~~~~~k~~~~~v-~~~~hP~~~~v~~t~~--------~~~g~  194 (954)
T PRK12566        125 ALLNFQQMTIDLTGLDLANASLLDEATAAAE-AMALAKRVAKSKSNRFFV-DEHCHPQTLSVLRTRA--------EGFGF  194 (954)
T ss_pred             HHHHHHHHHHHHhCchhhhhhhccchhHHHH-HHHHHHHHhhcCCCEEEE-CCCCCHHHHHHHHHhh--------hcCCc
Confidence            3456777788887544333334446666666 4444444443  445554 4455544444332221        11244


Q ss_pred             eEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc--ccc
Q 011669          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD--EVQ  297 (480)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D--Ev~  297 (480)
                      ..+.                 +++++.++    +++++|++...+ .-|.+..    +++|.++++++|+++|+-  =.-
T Consensus       195 ~i~~-----------------~~~~~~~~----~~~~~v~vq~P~-~~G~i~d----~~~i~~~~h~~gal~~~~~d~la  248 (954)
T PRK12566        195 ELVV-----------------DAVDNLAA----HAVFGALLQYPD-THGEIRD----LRPLIDQLHGQQALACVAADLLS  248 (954)
T ss_pred             EEEE-----------------cchhhcCC----CCEEEEEEECCC-CceEEcc----HHHHHHHHHHcCCEEEEEeCHHH
Confidence            4442                 23444332    368888885443 3455543    899999999999998832  111


Q ss_pred             -cCccccCCCcccccccCCCcceee-----eccccc-cCccccccccCHHHHHhhcCCCcc-------------------
Q 011669          298 -AGFARTGSHFWGFEAHGVVPDIVT-----MAKGIG-NGIPLGAVVTTPEIAEVLTRRNYF-------------------  351 (480)
Q Consensus       298 -tgfgr~G~~~~~~~~~~~~pDivt-----~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~-------------------  351 (480)
                       +.+-..|         +...||++     |+=.++ ||--.|++.+++++...+-.+..+                   
T Consensus       249 L~ll~~Pg---------e~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtRE  319 (954)
T PRK12566        249 LLVLTPPG---------ELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTRE  319 (954)
T ss_pred             HhCCCChh---------hcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHH
Confidence             1111111         12356653     334444 455678888888887776543211                   


Q ss_pred             ---------ccCCCcHHHHHHHHHHHHHh-hhhHH---HHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecC
Q 011669          352 ---------NTFGGNPVCTAAGHAVLKVI-QKDKL---QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD  418 (480)
Q Consensus       352 ---------~t~~~~~~~~aaa~a~L~~i-~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~  418 (480)
                               +..+.|..-+|.+.+..-.. -.+.+   .+++.....++.++|.+.  .+....    ...|--+.+.-.
T Consensus       320 QHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~--g~~~~~----~~fF~~~~v~~~  393 (954)
T PRK12566        320 QHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAK--GIKRLN----RHFFDTLTLEVG  393 (954)
T ss_pred             HHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc--CCcccc----CCccceEEEEcc
Confidence                     22233332222222222122 22333   345555666777777663  222211    122322222111


Q ss_pred             CCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          419 RQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       419 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      .        ...++.+...++|+.++...  .+.+.|+.-=++|.+|++.++++|.
T Consensus       394 ~--------~~~~~~~~a~~~~~n~r~~~--~~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        394 G--------AQAAIIESAEAARINLRILG--RGRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             C--------CHHHHHHHHHHCCCeeEEeC--CCeEEEEeCCCCCHHHHHHHHHHhc
Confidence            0        14567888889999998654  4678899888899999999999883

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=97.44  E-value=0.019  Score=57.61  Aligned_cols=226  Identities=15%  Similarity=0.094  Sum_probs=111.4

Q ss_pred             HHHHHHHHc-cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccc
Q 011669          241 KDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPD  318 (480)
Q Consensus       241 ~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pD  318 (480)
                      +.|+++|++ ...+-+-.+++- ..|++|..  .-+.|.+|..+|+++|++|++|.+|.|-...-+.+ -.-.-|+ ..|
T Consensus       220 ~~L~~AIe~D~arGlIPf~v~a-t~GTT~~c--a~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~-r~l~rGie~aD  295 (511)
T KOG0628|consen  220 DTLRKAIEEDIARGLIPFFVCA-TLGTTSSC--AFDELEELGPVCREEGLWLHVDAAYAGSAFICPEF-RYLMRGIEYAD  295 (511)
T ss_pred             HHHHHHHHHHHhCCCccEEEEE-eecCcccc--ccccHHHhcchhhhcCEEEEeehhhccccccCHHH-HHHhhcchhhc
Confidence            445555543 113345455554 44666554  45669999999999999999999998632211000 0000122 123


Q ss_pred             eee--eccccc-----------cCcccc-ccccCHHHHHhhcCCC-ccccCCC----cHHHHHHHHHHHHHhhhhHHHHH
Q 011669          319 IVT--MAKGIG-----------NGIPLG-AVVTTPEIAEVLTRRN-YFNTFGG----NPVCTAAGHAVLKVIQKDKLQNN  379 (480)
Q Consensus       319 ivt--~sK~~g-----------~G~pig-~v~~~~~~~~~l~~~~-~~~t~~~----~~~~~aaa~a~L~~i~~~~~~~~  379 (480)
                      ...  .+|.+-           .|..+. +.-+.+...+.-.+.. .-.-+..    ..+-..-.+-+++.+--++++++
T Consensus       296 Sfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~  375 (511)
T KOG0628|consen  296 SFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNY  375 (511)
T ss_pred             cccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHH
Confidence            221  234432           232222 1112222221111110 0011111    12222233445565556777777


Q ss_pred             HHHHHHHHHHHHHHhHHhcCcee--eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcCCC-EEEE
Q 011669          380 AHVVGSYLKERLTALKDKYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFYGN-VFRI  455 (480)
Q Consensus       380 ~~~~~~~l~~~L~~l~~~~~~~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~-~iRi  455 (480)
                      +++..+ |.+.+.++..+-+...  ..+-.|+ +.+.+..+       ....+.+.+++-.. .|.+.+....+. .||+
T Consensus       376 iR~h~~-La~~fe~lv~~d~~FE~~~~~~lgL-vcFRlk~~-------N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf  446 (511)
T KOG0628|consen  376 IREHVR-LAKEFETLVRADPRFEIVNKRILGL-VCFRLKGD-------NEINEALLNRLNSSGRIHLVPASLHGKFVLRF  446 (511)
T ss_pred             HHHHHH-HHHHHHHHhhcCCcceeecccccce-eEEeecCC-------cHHHHHHHHHHHhcCcEEEEEeeecceEEEEE
Confidence            776543 4455566543333221  2222333 22333221       23456677777655 477777654443 5788


Q ss_pred             eCCCC-CCHHHHHHHHHHHHHHHhh
Q 011669          456 TPPLC-FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       456 ~p~~~-~t~~~id~~l~~l~~~l~~  479 (480)
                      +.... ++++||+++.+.|.+....
T Consensus       447 ~V~s~~t~~~di~~a~~~I~~~a~~  471 (511)
T KOG0628|consen  447 AVCSPLTNESDIDEAWKIIFEAADE  471 (511)
T ss_pred             EecCCCCcHHHHHHHHHHHHHHHHH
Confidence            75433 5778999999988876543

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=97.41  E-value=0.06  Score=52.52  Aligned_cols=323  Identities=17%  Similarity=0.115  Sum_probs=149.6

Q ss_pred             CCCHHHHHHHHHHHHh-cc--cccccc-C-ChHHHHHHHHHHH-----hCCCCCC---EEEEeCCHHHHHHHHHHHHHhh
Q 011669          115 HCHPYVVDSIVNQIKR-IQ--HSTVLY-L-NHAIADFAEALAS-----KMPGNLK---VVFFTNSGTEANELAIMMARLY  181 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~-~~--~~~~~~-~-~~~~~~l~e~L~~-----~~~~~~~---~v~f~~sGseA~~~Alk~ar~~  181 (480)
                      ..+..|.+|+-..+.+ +.  +...+| . ++. .+-.|.|++     .+..+.+   .-+-.-|||-||..+-..... 
T Consensus        51 Fts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~-ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~-  128 (477)
T KOG2467|consen   51 FTSRAVMEALGSCLTNKYSEGYPGARYYGGNEY-IDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLK-  128 (477)
T ss_pred             chHHHHHHHHhHHhhcccccCCCcccccCcchH-HHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcC-
Confidence            3457888888776654 21  111222 2 333 333344443     2433322   223456999999887765544 


Q ss_pred             cCCceEEEEc---CCc--ccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          182 TGCNDIISLR---NAY--HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       182 ~~~~~ii~~~---~~y--hG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                       +.++|.-++   |+.  ||+.......++.+.|-..            .||+.... .+-...+.||+.-...   +.+
T Consensus       129 -Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeS------------mPYkv~~~-TG~IDYD~Le~~A~~f---rPk  191 (477)
T KOG2467|consen  129 -PHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFES------------MPYKVDPS-TGYIDYDKLEKTATLF---RPK  191 (477)
T ss_pred             -CCCeeeeccCCCCCccccccccCCceeeeeeeeccc------------CceeeCCC-CCceehHHHHHHHHhc---CCc
Confidence             566666543   221  3333222222222221111            12221111 1111145666544432   456


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc-cCccccCCCcccccccCCCcceeeec--cccccCcccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLG  333 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig  333 (480)
                      .+|+-      +.--+..-...+++++|++.|++|.+|=+| +|+.-.|.-.-.|++    .||||..  |++-| -|-|
T Consensus       192 ~iiaG------~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----~DiVTTTTHKsLRG-PRg~  260 (477)
T KOG2467|consen  192 LIIAG------TSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----CDIVTTTTHKSLRG-PRGA  260 (477)
T ss_pred             EEEec------cccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc----cceeeccccccccC-Ccce
Confidence            66652      222222223689999999999999999876 454333311112333    5777544  77754 2333


Q ss_pred             ccccCHHHH---------------HhhcC----CCccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Q 011669          334 AVVTTPEIA---------------EVLTR----RNYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL  391 (480)
Q Consensus       334 ~v~~~~~~~---------------~~l~~----~~~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L  391 (480)
                      .+..++.+.               +.+..    ..+++..+-.-.+.|.   +|+--...   .+++++.++.+.|.+.|
T Consensus       261 mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAv---ALkQa~tpefk~Yq~qV~~Nakala~~l  337 (477)
T KOG2467|consen  261 MIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAV---ALKQAMTPEFKEYQKQVLKNAKALASAL  337 (477)
T ss_pred             eEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHH---HHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            344433221               11111    1122222221222222   33332333   34555666666666666


Q ss_pred             HHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHH---HHcCceeecc-CcCCCEEEEeCCCCC----C
Q 011669          392 TALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKM---KEMGVLVGKG-GFYGNVFRITPPLCF----T  462 (480)
Q Consensus       392 ~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l---~~~Gv~v~~~-~~~~~~iRi~p~~~~----t  462 (480)
                      .++  .+.++.  .|. ..++.+++....    -+...++.+++.+   .++.-+.+-. ....+-|||.-|..+    .
T Consensus       338 ~~~--Gy~lvt--gGTDnHlvLvDLr~~G----~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~  409 (477)
T KOG2467|consen  338 ISR--GYKLVT--GGTDNHLVLVDLRPKG----VDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFG  409 (477)
T ss_pred             HHc--CceEec--CCccceEEEEeccccC----CchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCcc
Confidence            554  232221  111 123444543221    2334455555544   2333222211 112345899877655    4


Q ss_pred             HHHHHHHHHHHHHHHh
Q 011669          463 KEDADYLVDVMDYSLS  478 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~  478 (480)
                      ++|.++..+-|+++++
T Consensus       410 e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  410 EEDFEKVADFIDRAVK  425 (477)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6888888888777653

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=96.13  E-value=0.11  Score=49.50  Aligned_cols=187  Identities=15%  Similarity=0.157  Sum_probs=106.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCC--EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCC
Q 011669          140 NHAIADFAEALASKMPGNLK--VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~~--~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~  217 (480)
                      .-.+..|.+-.++.++....  +.- .-|||.|+..||.-...  +++..+...|.=.-.....+.+.+...  -.+...
T Consensus        64 D~GRdtLe~vyA~vf~aE~a~VRpq-~isGTHAI~~aLfg~LR--pgDell~i~G~PYDTLeevIG~rg~~~--gSL~df  138 (416)
T COG4100          64 DLGRDTLERVYAQVFGAEAALVRPQ-IISGTHAIACALFGILR--PGDELLYITGSPYDTLEEVIGLRGEGQ--GSLKDF  138 (416)
T ss_pred             ccchhHHHHHHHHHhccccceeeee-eecchhHHHHHHHhccC--CCCeEEEecCCcchhHHHHhccCCCCc--ccHHHh
Confidence            44567788888888864322  222 35899999999875443  677887766554333333333333210  001112


Q ss_pred             CeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh--CCEEEEcc
Q 011669          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIADE  295 (480)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gillI~DE  295 (480)
                      |+..-.+|...      ++....+.++..++    ++++.|.+--.-|-+-.-..+-+.++++.++.++-  ++++.+|.
T Consensus       139 gi~Y~~v~Lt~------~gkiD~~~v~~~i~----~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDN  208 (416)
T COG4100         139 GIKYKAVPLTA------DGKIDIQAVKTAIS----DRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDN  208 (416)
T ss_pred             Ccceeeccccc------CCcccHHHHHHhcC----ccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEec
Confidence            33222222211      22222556666664    47777766433332211111224566667777763  79999999


Q ss_pred             cccCccccCCCcccccccCCCccee--eeccccccCc--cccccccCHHHHHhhcC
Q 011669          296 VQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGI--PLGAVVTTPEIAEVLTR  347 (480)
Q Consensus       296 v~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~--pig~v~~~~~~~~~l~~  347 (480)
                      .|..|-.+-      +...+..|++  ++=|..|||+  --||+.+++++++...-
T Consensus       209 CYGEFvE~~------EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~y  258 (416)
T COG4100         209 CYGEFVEEK------EPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAAY  258 (416)
T ss_pred             cchhhhhcc------CccccchhhhccceeeCCCCceeeccceeechHHHHHhhce
Confidence            998774332      3334566776  5679999885  45789999999887654

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=95.94  E-value=0.035  Score=48.46  Aligned_cols=57  Identities=14%  Similarity=0.116  Sum_probs=44.5

Q ss_pred             cCChHHHHHHHHHHHhCC----CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccc
Q 011669          138 YLNHAIADFAEALASKMP----GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG  196 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~----~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG  196 (480)
                      +..+....+++.+.+.++    .+.++|++|+++++|++.+++....  +++.|++.++.|.|
T Consensus        93 G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~d--pGD~VlVp~P~Y~~  153 (153)
T PLN02994         93 GLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIAD--PGDAFLVPTPYYAA  153 (153)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcC--CCCEEEEeCCCCCC
Confidence            445666777777766644    3467899999999999999887654  78899999999975

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=91.23  E-value=24  Score=37.79  Aligned_cols=268  Identities=15%  Similarity=0.184  Sum_probs=133.2

Q ss_pred             HHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC
Q 011669          148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP  227 (480)
Q Consensus       148 e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~  227 (480)
                      ..++++.+-+..+.-+..-||.|-|+.....+ ..++++ ++.+...|-.+..++.....        ..|+..+.    
T Consensus       170 Tmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~-~~krkk-~vvd~~~hpqtlsV~~TRa~--------~~~i~v~~----  235 (1001)
T KOG2040|consen  170 TMITDLTGLPMANASLLDEGTAAAEAMALCNR-INKRKK-FVVDSNCHPQTLSVVKTRAK--------GFGIKVVV----  235 (1001)
T ss_pred             HhhhhccCCcccchhhhccchhHHHHHHHHHh-hcccce-EEecCCCCcchhhhhhcccc--------ccceeEEe----
Confidence            34455555444555566678877775554444 445556 44566666666655543321        12333221    


Q ss_pred             cCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcc-c--ccCccccC
Q 011669          228 YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE-V--QAGFARTG  304 (480)
Q Consensus       228 ~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE-v--~tgfgr~G  304 (480)
                                   .++++.-.  ..++++++++--.... |.+..    ..++.+++++.|.++++-- -  -|-+-..|
T Consensus       236 -------------~~~~~~~~--s~~~v~gvlvQYP~t~-G~i~d----~~el~~~a~~~~s~vv~atDLLaLtiLrpPg  295 (1001)
T KOG2040|consen  236 -------------SDIKEADY--SSKDVSGVLVQYPDTE-GSVLD----FDELVELAHANGSLVVMATDLLALTILRPPG  295 (1001)
T ss_pred             -------------cCHHHhhc--cccceeEEEEEcCCCC-CcccC----HHHHHHHhhccCceEEEeehhhHHHccCChh
Confidence                         11222211  1347888887654444 45554    7899999999998877421 1  11111111


Q ss_pred             CCcccccccCCCcceee-----eccccc-cCccccccccCHHHHHhhcCCCccccC--CCc-------------------
Q 011669          305 SHFWGFEAHGVVPDIVT-----MAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTF--GGN-------------------  357 (480)
Q Consensus       305 ~~~~~~~~~~~~pDivt-----~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~--~~~-------------------  357 (480)
                             .+|  .||++     |+-.+| ||--.|+..+++++...+..+..+.|-  .++                   
T Consensus       296 -------efG--aDIavGSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKA  366 (1001)
T KOG2040|consen  296 -------EFG--ADIAVGSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKA  366 (1001)
T ss_pred             -------hcC--ceeeeccccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhcc
Confidence                   122  35543     444555 444455566666665544333222111  111                   


Q ss_pred             --HHHHHHHH-HH----HHHhhh----hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCH
Q 011669          358 --PVCTAAGH-AV----LKVIQK----DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK  426 (480)
Q Consensus       358 --~~~~aaa~-a~----L~~i~~----~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~  426 (480)
                        .++.|-|+ |.    ..+...    +++..++......|..+|+...  +.++    ....|-.+.+.-        .
T Consensus       367 TSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~ag--hel~----~k~fFDTLkI~~--------~  432 (1001)
T KOG2040|consen  367 TSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAG--HELQ----HKPFFDTLKIRC--------G  432 (1001)
T ss_pred             chhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcc--hhhc----cccccceEEEEe--------c
Confidence              11111111 11    111111    2334445555556666665542  2111    111221222110        1


Q ss_pred             HHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          427 AETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       427 ~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      ...+++.....++++-++--.  .+.+-++.--+++++|+|.++..+.
T Consensus       433 ~s~~~~l~rA~~~~iNlr~~e--d~tigvslDETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  433 CSAEEVLDRAAKRQINLRLVE--DGTIGVSLDETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             CcHHHHHHHHHhhcCceEEee--cCceEEeecccccHHHHHHHHHHHc
Confidence            125667777777777776432  4567777777889999999998875

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=85.58  E-value=5.4  Score=37.55  Aligned_cols=227  Identities=12%  Similarity=0.086  Sum_probs=108.1

Q ss_pred             HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc---cccCCC
Q 011669          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF---EAHGVV  316 (480)
Q Consensus       240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~---~~~~~~  316 (480)
                      ++.+++.+++.+++-+-+|....    .-.-+-+++-+++|..+|..|++.-|+..+|. +-... ...-+   ...| .
T Consensus       143 leav~~~iee~g~dcilci~stt----scfapr~pd~leaiaaica~~diphivnnayg-lqsee-~i~~iaa~~~~g-r  215 (432)
T KOG3843|consen  143 LEAVEAIIEELGEDCILCIHSTT----SCFAPRSPDNLEAIAAICAAHDIPHIVNNAYG-LQSEE-CIHKIAAAAECG-R  215 (432)
T ss_pred             HHHHHHHHHHhCCceEEEEeecc----cccCCCCCchHHHHHHHHHccCchhhhccccc-cchHH-HHHHHHHHhhhc-c
Confidence            56677788776554344443322    11234467889999999999999999999873 31110 00000   0112 2


Q ss_pred             ccee--eeccccccCcccc-cccc--CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011669          317 PDIV--TMAKGIGNGIPLG-AVVT--TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (480)
Q Consensus       317 pDiv--t~sK~~g~G~pig-~v~~--~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L  391 (480)
                      .|.+  ++-|.|--  |+| ++++  ++..++.+.+.-.+-.-..+.+-....+-.+.--.-.++...-+++..+++..+
T Consensus       216 ida~vqsldknf~v--pvggaiia~fk~n~iq~iak~ypgrasa~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki  293 (432)
T KOG3843|consen  216 IDAFVQSLDKNFMV--PVGGAIIAAFKDNFIQEIAKMYPGRASASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKI  293 (432)
T ss_pred             HHHHHHHhhhccee--ecchhHhhHhHHHHHHHHHHhCCCccccCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence            2322  56677651  332 3332  345555554422221122222222222211110000123344455666677777


Q ss_pred             HHhHHhcC-ceeeEeccceeEEEEEecCCCcCCCCHH-HHHHHHHHHHHcCce---eeccCc------------------
Q 011669          392 TALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKA-ETLYIMDKMKEMGVL---VGKGGF------------------  448 (480)
Q Consensus       392 ~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~~Gv~---v~~~~~------------------  448 (480)
                      .++.+.++ .+..++..-.-..+.+.    +..+... ....+...|..+||-   +.|.+.                  
T Consensus       294 ~~~ae~~~e~l~~~p~n~is~amtl~----ti~~~k~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~  369 (432)
T KOG3843|consen  294 IKFAEAIGECLLETPENEISLAMTLK----TIDEAKDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTN  369 (432)
T ss_pred             HHHHHHhhhhhhcCCCchhhhhhhhc----cCChHHhhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccC
Confidence            77666553 22222211111111121    1112222 123355566666653   333211                  


Q ss_pred             --CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          449 --YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       449 --~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                        ...++-+..+...++.|+|+++.+|++.++.
T Consensus       370 e~~~~yln~a~aigm~~hdld~~~~rl~~~~a~  402 (432)
T KOG3843|consen  370 EQHCAYLNAACAIGMKDHDLDEFFNRLDRCLAA  402 (432)
T ss_pred             cCchhHhhHHHhcCCcHhHHHHHHHHHHHHHHH
Confidence              0123444445567889999999999987753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	480
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		5e-59
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		5e-59
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		8e-59
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		9e-59
2e54_A	385	Crystal Structure Of Acetylornithine Aminotransfera		1e-51
2ord_A	397	Crystal Structure Of Acetylornithine Aminotransfera		8e-51
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		4e-50
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		9e-50
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		1e-48
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		1e-47
3r4t_A	467	Crystal Structure Of 4-Aminobutyrate Aminotransfera		1e-47
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		5e-47
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		6e-47
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		2e-46
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		4e-46
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		3e-45
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		4e-45
3q8n_A	453	Crystal Structure Of 4-Aminobutyrate Transaminase F		2e-44
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		9e-44
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		4e-43
2pb0_A	420	Structure Of Biosynthetic N-Acetylornithine Aminotr		2e-42
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		1e-38
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		1e-38
3nui_A	478	Crystal Structure Of Omega-Transferase From Vibrio		4e-38
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		6e-38
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		1e-37
4e3r_A	473	Plp-Bound Aminotransferase Mutant Crystal Structure		1e-37
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		2e-37
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		2e-37
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		2e-36
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		3e-36
2byl_A	439	Structure Of Ornithine Aminotransferase Triple Muta		3e-36
4e3q_A	473	Pmp-Bound Form Of Aminotransferase Crystal Structur		3e-36
3i5t_A	476	Crystal Structure Of Aminotransferase Prk07036 From		5e-36
4grx_A	465	Structure Of An Omega-Aminotransferase From Paracoc		2e-35
2byj_A	439	Ornithine Aminotransferase Mutant Y85i Length = 439		5e-35
2can_A	402	Human Ornithine Aminotransferase Complexed With L-C		2e-34
1oat_A	439	Ornithine Aminotransferase Length = 439		2e-34
3ruy_A	392	Crystal Structure Of The Ornithine-Oxo Acid Transam		3e-33
3du4_A	448	Crystal Structure Of 7-Keto-8-Aminopelargonic Acid		2e-32
3dod_A	448	Crystal Structure Of Plp Bound 7,8-diaminopelargoni		4e-32
3a8u_X	449	Crystal Structure Of Omega-Amino Acid:pyruvate Amin		9e-31
4a6r_A	459	Crystal Structure Of The Omega Transaminase From Ch		2e-30
3i4j_A	430	Crystal Structure Of Aminotransferase, Class Iii Fr		4e-27
1dty_A	429	Crystal Structure Of Adenosylmethionine-8-Amino-7-O		6e-25
3l44_A	434	Crystal Structure Of Bacillus Anthracis Heml-1, Glu		1e-24
1qj3_A	429	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		1e-24
1mgv_A	429	Crystal Structure Of The R391a Mutant Of 7,8-Diamin		1e-24
1s08_A	429	Crystal Structure Of The D147n Mutant Of 7,8- Diami		1e-24
1s0a_A	429	Crystal Structure Of The Y17f Mutant Of 7,8- Diamin		2e-24
1s07_A	429	Crystal Structure Of The R253a Mutant Of 7,8-Diamin		8e-24
1s09_A	429	Crystal Structure Of The Y144f Mutant Of 7,8- Diami		1e-23
1s06_A	429	Crystal Structure Of The R253k Mutant Of 7,8- Diami		1e-23
2epj_A	434	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		6e-22
2gsa_A	432	Crystal Structure Of Glutamate-1-Semialdehyde Amino		3e-21
2hoy_A	432	Inter-Subunit Signaling In Gsam Length = 432		4e-21
2e7u_A	424	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		8e-21
3fq7_A	427	Gabaculine Complex Of Gsam Length = 427		1e-20
3fqa_A	427	Gabaculien Complex Of Gabaculine Resistant Gsam Ver		2e-20
3fq8_A	427	M248i Mutant Of Gsam Length = 427		3e-20
3bs8_A	438	Crystal Structure Of Glutamate 1-Semialdehyde Amino		5e-19
4ao9_A	454	Biochemical Properties And Crystal Structure Of A N		9e-19
2cfb_A	411	Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm		3e-18
4e77_A	429	2.0a Crystal Structure Of A Glutamate-1-Semialdehyd		4e-18
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		6e-18
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		1e-17
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		3e-17
2yku_A	465	Structural Determinants Of The Beta-Selectivity Of		3e-17
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		5e-17
3k28_A	429	Crystal Structure Of A Glutamate-1-Semialdehyde Ami		7e-17
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		2e-16
3tft_A	457	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		2e-14
3lv2_A	462	Crystal Structure Of Mycobacterium Tuberculosis 7,8		2e-14
3bv0_A	437	Crystal Structure Of Plp Bound 7,8-Diaminopelargoni		2e-14
2cy8_A	453	Crystal Structure Of D-Phenylglycine Aminotransfera		3e-14
4a0g_A	831	Structure Of Bifunctional Dapa Aminotransferase-Dtb		2e-05

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score =  225 bits (573), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 145/413 (35%), Positives = 214/413 (51%), Gaps = 20/413 (4%)
Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
           +P+ +   K  +++D +GR  LD   G  +   GHCHP +V  I     ++ H     L+
Sbjct: 25  EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 84
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
             + D A  LA+  P  L      ++G E+NE AI MA+L TG  +I+    ++HG    
Sbjct: 85  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFGADGEM-YAKDVQ---DLIDFGTSGH 254
              AT  +  K  V    V     P P  YR  F  +G   Y  ++    DLID  +SG+
Sbjct: 145 AASATYSAGRK-GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 203
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
           +A F++E I   GGIIEL  GY+ A+ +  +  G L I DE Q G  RTG+ F   +  G
Sbjct: 204 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 262
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQ 372
           V PDI+T++K +G G+PL A+VT+  I E      Y  + T   +P+  A G  VL V+Q
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 322
Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYI 432
           +D L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE V DR+ K PA      I
Sbjct: 323 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 382
Query: 433 MDKMKEMGV------LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
             +   +G+      L G GG    VFRI PPL  ++++ D  + ++  ++ +
Sbjct: 383 TRECMNLGLSMNIVQLPGMGG----VFRIAPPLTVSEDEIDLGLSLLGQAIER 431

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score =  225 bits (573), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 143/412 (34%), Positives = 212/412 (51%), Gaps = 18/412 (4%)
Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
           +P+ +   K  +++D +GR  LD   G  +   GHCHP +V  I     ++ H     L+
Sbjct: 23  EPMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 82
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
             + D A  LA+  P  L      ++G E+NE AI MA+L TG  +I+    ++HG    
Sbjct: 83  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 142
Query: 201 TMGATAQSNWK-FNVVQTGVHHALNPDPYRGVFGADGEM-YAKDVQ---DLIDFGTSGHV 255
              AT  +  K       G      P  YR  F  +G   Y  ++    DLID  +SG++
Sbjct: 143 AASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNL 202
Query: 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV 315
           A F++E I   GGIIEL  GY+ A+ +  +  G L I DE Q G  RTG+ F   +  GV
Sbjct: 203 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGV 261
Query: 316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQK 373
            PDI+T++K +G G+PL A+VT+  I E      Y  + T   +P+  A G  VL V+Q+
Sbjct: 262 TPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR 321
Query: 374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM 433
           D L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE V DR+ K PA      I 
Sbjct: 322 DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKIT 381
Query: 434 DKMKEMGV------LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
            +   +G+      L G GG    VFRI PPL  ++++ D  + ++  ++ +
Sbjct: 382 RECMNLGLSMNIVQLPGMGG----VFRIAPPLTVSEDEIDLGLSLLGQAIER 429

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score =  224 bits (571), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/413 (35%), Positives = 214/413 (51%), Gaps = 20/413 (4%)
Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
           +P+ +   K  +++D +GR  LD   G  +   GHCHP +V  I     ++ H     L+
Sbjct: 25  EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 84
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
             + D A  LA+  P  L      ++G E+NE AI MA+L TG  +I+    ++HG    
Sbjct: 85  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFGADGEM-YAKDVQ---DLIDFGTSGH 254
              AT  +  K  V    V     P P  YR  F  +G   Y  ++    DLID  +SG+
Sbjct: 145 AASATYSAGRK-GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 203
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
           +A F++E I   GGIIEL  GY+ A+ +  +  G L I DE Q G  RTG+ F   +  G
Sbjct: 204 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 262
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQ 372
           V PDI+T++K +G G+PL A+VT+  I E      Y  + T   +P+  A G  VL V+Q
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 322
Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYI 432
           +D L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE V DR+ K PA      I
Sbjct: 323 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 382
Query: 433 MDKMKEMGV------LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
             +   +G+      L G GG    VFRI PPL  ++++ D  + ++  ++ +
Sbjct: 383 TRECMNLGLSMNIVQLPGMGG----VFRIAPPLTVSEDEIDLGLSLLGQAIER 431

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score =  224 bits (571), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 145/413 (35%), Positives = 214/413 (51%), Gaps = 20/413 (4%)
Query: 81  KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
           +P+ +   K  +++D +GR  LD   G  +   GHCHP +V  I     ++ H     L+
Sbjct: 24  EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 83
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
             + D A  LA+  P  L      ++G E+NE AI MA+L TG  +I+    ++HG    
Sbjct: 84  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 143
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFGADGEM-YAKDVQ---DLIDFGTSGH 254
              AT  +  K  V    V     P P  YR  F  +G   Y  ++    DLID  +SG+
Sbjct: 144 AASATYSAGRK-GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 202
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
           +A F++E I   GGIIEL  GY+ A+ +  +  G L I DE Q G  RTG+ F   +  G
Sbjct: 203 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 261
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQ 372
           V PDI+T++K +G G+PL A+VT+  I E      Y  + T   +P+  A G  VL V+Q
Sbjct: 262 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 321
Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYI 432
           +D L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE V DR+ K PA      I
Sbjct: 322 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 381
Query: 433 MDKMKEMGV------LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
             +   +G+      L G GG    VFRI PPL  ++++ D  + ++  ++ +
Sbjct: 382 TRECMNLGLSMNIVQLPGMGG----VFRIAPPLTVSEDEIDLGLSLLGQAIER 430

>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385

Iteration: 1
 Score =  200 bits (509), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/413 (33%), Positives = 207/413 (50%), Gaps = 41/413 (9%)
Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
           L + YS+ P   V GK  +++DE G  YLD   GIA    GH HP +V++I +Q +++ H
Sbjct: 3   LMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 62
Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND-----II 188
            + L+ N    + AE L+    G    VFF N+GTEANE AI +AR Y          I+
Sbjct: 63  CSNLFWNRPQMELAELLSKNTFGG--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRIL 120
Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248
           S  N++HG   G++ AT Q  ++               P+  +          +V+DL  
Sbjct: 121 SAHNSFHGRTLGSLTATGQPKYQ--------------KPFEPLVPGFEYFEFNNVEDLRR 166
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
             +    A FL E IQG  GI+     +L    K   +   L + DEVQ G  RTG  F 
Sbjct: 167 KMSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLF- 224
Query: 309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
            ++ +GVVPD++T AKG+G G+P+GAV+   E A VL   ++  TFGGNP+   AG  V+
Sbjct: 225 AYQKYGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACRAGVTVI 283
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF---VTDRQLKTPA 425
           K + K+         G+YL ++L  +K++Y ++ DVRG G ++G++F   V++R++ T  
Sbjct: 284 KELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVAT-- 341
Query: 426 KAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
                    K  E  +LV   G   N  R  PPL     + D  V+ +   L 
Sbjct: 342 ---------KCFENKLLVVPAG--NNTIRFLPPLTVEYGEIDLAVETLKKVLQ 383

>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397

Iteration: 1
 Score =  197 bits (502), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 138/413 (33%), Positives = 205/413 (49%), Gaps = 41/413 (9%)
Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
           L + YS+ P   V GK  +++DE G  YLD   GIA    GH HP +V++I +Q +++ H
Sbjct: 15  LXNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 74
Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND-----II 188
            + L+ N    + AE L+    G    VFF N+GTEANE AI +AR Y          I+
Sbjct: 75  CSNLFWNRPQXELAELLSKNTFGG--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRIL 132
Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248
           S  N++HG   G++ AT Q  ++               P+  +          +V+DL  
Sbjct: 133 SAHNSFHGRTLGSLTATGQPKYQ--------------KPFEPLVPGFEYFEFNNVEDLRR 178
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
             +    A FL E IQG  GI+     +L    K   +   L + DEVQ G  RTG  F 
Sbjct: 179 KXSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLF- 236
Query: 309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
            ++ +GVVPD++T AKG+G G+P+GAV+   E A VL   ++  TFGGNP+   AG  V+
Sbjct: 237 AYQKYGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACRAGVTVI 295
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF---VTDRQLKTPA 425
           K + K+         G+YL ++L   K++Y ++ DVRG G  +G++F   V++R++ T  
Sbjct: 296 KELTKEGFLEEVEEKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQFREEVSNREVAT-- 353
Query: 426 KAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
                    K  E  +LV   G   N  R  PPL     + D  V+ +   L 
Sbjct: 354 ---------KCFENKLLVVPAG--NNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score =  195 bits (496), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/402 (34%), Positives = 202/402 (50%), Gaps = 51/402 (12%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+  V GK  YL+DE G+ YLD   GI     GH +P + +++  Q++++ H + LY N 
Sbjct: 11  PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENP 70
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND--IISLRNAYHG 196
              + A  L        KV FF NSGTE+ E AI +AR Y    G N    IS  N++HG
Sbjct: 71  WQEELAHKLVKHFWTEGKV-FFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHG 129
Query: 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK-----DVQDLIDFGT 251
              G++ AT Q  +         H    P          G  YAK      V  L+D  T
Sbjct: 130 RTYGSLSATGQPKF---------HKGFEPL-------VPGFSYAKLNDIDSVYKLLDEET 173
Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
               AG + E IQG GG+ E +  +L  + +  K+   L I DEVQ G  RTG  F+ ++
Sbjct: 174 ----AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQ 228
Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371
              + PD++ +AKG+G G+P+GA++   E+A+  T  ++ +TFGGNP+   AG  V  V 
Sbjct: 229 HFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVV--VD 286
Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLY 431
           + +KL  +   VG+Y KE+L  L       G V+GRG +LG+E   +R+ K        Y
Sbjct: 287 EVEKLLPHVREVGNYFKEKLKELGK-----GKVKGRGLMLGLEL--ERECKD-------Y 332
Query: 432 IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
           ++  + E G+L+      G V R  PPL   KE  D  + V+
Sbjct: 333 VLKAL-EKGLLINCTA--GKVLRFLPPLIIQKEHIDRAISVL 371

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score =  194 bits (493), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 213/433 (49%), Gaps = 14/433 (3%)
Query: 54  PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCC 113
           P  GP +  +  +R+  +S  +    + P+  VD     + D +G  ++D   GIA    
Sbjct: 21  PLPGPRSGALAERRRAAVSAGVGS--TAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTV 78
Query: 114 GHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALASKMPGNL-KVVFFTNSGTEAN 171
           G  HP V  +I +Q     H+  +   +      AE L +  PG+  K     NSG EA 
Sbjct: 79  GASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAV 138
Query: 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPY 228
           E AI +ARL TG   +++  NAYHG    TM  TA+S     +F      V+      P 
Sbjct: 139 ENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPL 198
Query: 229 RGVFGADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287
           R   G  GE  A+     I+       +A  + E IQG GG I  APG+L  +     + 
Sbjct: 199 RDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN 258
Query: 288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR 347
           G + IADEVQ GFARTG+ F   E  G+VPDIVTMA GI  G+PL AV    E+ + +  
Sbjct: 259 GVVFIADEVQTGFARTGAWF-ASEHEGIVPDIVTMAXGIAGGMPLSAVTGRAELMDAVYA 317
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR 407
                T+GGNPV  AA  A L V+++  L   A  + + +  RL+AL ++  IIG+VRGR
Sbjct: 318 GGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGR 377
Query: 408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD 467
           G +L +E V    L+ P  A T  I  +    GVL+   G +GNV R+ PPL       D
Sbjct: 378 GAMLAIEIVKPGTLE-PDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVI----GD 432
Query: 468 YLVDVMDYSLSKM 480
            L+D    +LS +
Sbjct: 433 DLLDEGITALSDI 445

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/446 (29%), Positives = 215/446 (48%), Gaps = 29/446 (6%)
Query: 61  DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQ--YLFDENGRRYLDAFGGIATVCCGHCHP 118
           DE+LAK + ++       +S     V  K +  ++ D  G+RYLD   G+  V  G+   
Sbjct: 10  DELLAKDEQYVWHGX-RPFSPNSTTVGAKAEGCWVEDIQGKRYLDGXSGLWCVNSGYGRK 68
Query: 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178
            + ++   Q++ + +      +      AE L   + G   V+FF+NSG+EANE A  +A
Sbjct: 69  ELAEAAYKQLQTLSYFPXSQSHEPAIKLAEKLNEWLGGEY-VIFFSNSGSEANETAFKIA 127
Query: 179 RLYTGCN------DIISLRNAYHGNAAGTMG--ATAQSNWKFNVVQTGVHHALNPDPYRG 230
           R Y             S    YHGN   T      AQ  +++    +G  H   PD YR 
Sbjct: 128 RQYYAQKGEPHRYKFXSRYRGYHGNTXATXAATGQAQRRYQYEPFASGFLHVTPPDCYRX 187
Query: 231 VFGADGEMY----AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286
                  +Y     K+V  +  +  S  +A F+ E I   GGI+     Y  AV+++ +K
Sbjct: 188 PGIERENIYDVECVKEVDRVXTWELSETIAAFIXEPIITGGGILXAPQDYXKAVHETCQK 247
Query: 287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL 345
            G L I+DEV  GF RTG  F GF  + V PDI+T AKGI +  +PL A     EI E  
Sbjct: 248 HGALLISDEVICGFGRTGKAF-GFXNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAF 306
Query: 346 TRR------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG 399
             +       + NTFGGNP   A     L++I+ + L   +   GS L E+L     ++ 
Sbjct: 307 KGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQXGSLLLEQLKEEIGEHP 366
Query: 400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETL-YIMDKMKEMGVLVGKGGF----YGNVFR 454
           ++GD+RG+G L+G+E V D++ K P   + +  +++  KE G+++G+ G     Y N+  
Sbjct: 367 LVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGXTTAGYNNILT 426
Query: 455 ITPPLCFTKEDADYLVDVMDYSLSKM 480
           + PPL  + E+  +++  +  +  ++
Sbjct: 427 LAPPLVISSEEIAFVIGTLKTAXERI 452

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score =  187 bits (475), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 189/396 (47%), Gaps = 29/396 (7%)
Query: 83  LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA 142
           L +V G+   ++D  G  Y+D  GG      GH +P VV+++  Q + +           
Sbjct: 29  LLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM 88
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM 202
             +F   L + +P  L  VF  NSGTEANE A+  AR +TG    ++    + G   G++
Sbjct: 89  RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSL 148
Query: 203 GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES 262
             T +  ++              +P+  +      +   DV+ L         A  + E 
Sbjct: 149 SVTWEPKYR--------------EPFLPLVEPVEFIPYNDVEAL-KRAVDEETAAVILEP 193
Query: 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM 322
           +QG GG+    P +L A  +  ++ G L I DE+Q G  RTG  F  FE  G+VPDI+T+
Sbjct: 194 VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPDILTL 252
Query: 323 AKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHV 382
           AK +G G+PLG  V   E+A  + +  +  TFGGNP+  AAG A ++ +++ +L   A  
Sbjct: 253 AKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAE 312
Query: 383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL 442
           +G +  E+L A+      I +VRG G ++G+E    ++   P      YI    KE  VL
Sbjct: 313 LGPWFMEKLRAIPSPK--IREVRGMGLMVGLEL---KEKAAP------YIARLEKEHRVL 361
Query: 443 VGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
             + G    V R  PPL   KED + +V+ +   L+
Sbjct: 362 ALQAG--PTVIRFLPPLVIEKEDLERVVEAVRAVLA 395

>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467

Iteration: 1
 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/429 (32%), Positives = 211/429 (49%), Gaps = 17/429 (3%)
Query: 57  GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           GP++ E+  +R   +S  +    + P+ VV      + D +G R +D   GIA    G+ 
Sbjct: 38  GPASLELNKRRAAAVSGGVG--VTLPVFVVRAGGGIVEDADGNRLIDLGSGIAVTTIGNS 95
Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALASKMPGN--LKVVFFTNSGTEANEL 173
            P VVD++ +Q+++  H+  +   +      AE L    PG+   + V F NSG EA E 
Sbjct: 96  APRVVDAVRDQVEQFTHTCFMVTPYEQYVAVAEQLNRITPGSGEKRTVLF-NSGAEAVEN 154
Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYRG 230
           +I +AR +T    +++   AYHG    TM  TA+S      F      ++ A    PYR 
Sbjct: 155 SIKVARAHTRKQAVVAFDYAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYPYRD 214
Query: 231 VF-----GADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
                    DGE+ A+   +LID    + ++A  + E I G GG I  A G+LPA+ +  
Sbjct: 215 NLLDKDIATDGELAAERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWC 274
Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           +    + IADEVQ GFARTG+ F   +   V PD++  A GI +G PL AV    EI + 
Sbjct: 275 RDNDVVFIADEVQTGFARTGAMF-ACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDA 333
Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   TFGGNPV  AA  A ++ I++D +   A  +   + +RL  L+     +GDV
Sbjct: 334 PHTSGLGGTFGGNPVACAAALATIETIERDGMVERARQIERLVMDRLLRLQAADDRLGDV 393
Query: 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE 464
           RGRG ++ +E V     + P  A T  +       GV+V   G +GNV R+ PPL  + E
Sbjct: 394 RGRGAMIAMELVKSGTAE-PDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTISDE 452
Query: 465 DADYLVDVM 473
                +D++
Sbjct: 453 LLSEGLDIL 461

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score =  185 bits (469), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 190/379 (50%), Gaps = 10/379 (2%)
Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
           ++D  GR YLD  GGIA +  GH HP VV ++  Q+K++ H+    L +    +  E + 
Sbjct: 35  VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
            K+PG+  K      +G+EA E A+ +AR  T  +  I+   AYHG    T+  T + N 
Sbjct: 95  QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
                 ++   V+ AL P P  G+  ++ +  A   +   +      +A  + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGSG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
           G    +P ++  +     + G + IADEVQ+G  RTG+ F   E  GV PD+ T AK I 
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            G PL  V    E+ + +       T+ GNP+   A   VLKV +++ L   A+ +G  L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG 447
           K+ L A+ +K+  IGDVRG G ++ +E   D     P    T  I+ + ++ G+++   G
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCG 391
Query: 448 FYGNVFRITPPLCFTKEDA 466
            Y NV RI  PL  T EDA
Sbjct: 392 PYYNVLRILVPL--TIEDA 408

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score =  184 bits (468), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 190/379 (50%), Gaps = 10/379 (2%)
Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
           ++D  GR YLD  GGIA +  GH HP VV ++  Q+K++ H+    L +    +  E + 
Sbjct: 35  VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
            K+PG+  K      +G+EA E A+ +AR  T  +  I+   AYHG    T+  T + N 
Sbjct: 95  QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
                 ++   V+ AL P P  G+  ++ +  A   +   +      +A  + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
           G    +P ++  +     + G + IADEVQ+G  RTG+ F   E  GV PD+ T AK I 
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            G PL  V    E+ + +       T+ GNP+   A   VLKV +++ L   A+ +G  L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG 447
           K+ L A+ +K+  IGDVRG G ++ +E   D     P    T  I+ + ++ G+++   G
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCG 391
Query: 448 FYGNVFRITPPLCFTKEDA 466
            Y NV RI  PL  T EDA
Sbjct: 392 PYYNVLRILVPL--TIEDA 408

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 189/379 (49%), Gaps = 10/379 (2%)
Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
           ++D  GR YLD  GGIA +  GH HP VV ++  Q+K++ H+    L +    +  E + 
Sbjct: 35  VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
            K+PG+  K      +G+EA E A+ +AR  T  +  I+   AYHG    T+  T + N 
Sbjct: 95  QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
                 ++   V+ AL P P  G+  ++ +  A   +   +      +A  + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
           G    +P ++  +     + G + IADE Q+G  RTG+ F   E  GV PD+ T AK I 
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            G PL  V    E+ + +       T+ GNP+   A   VLKV +++ L   A+ +G  L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG 447
           K+ L A+ +K+  IGDVRG G ++ +E   D     P    T  I+ + ++ G+++   G
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCG 391
Query: 448 FYGNVFRITPPLCFTKEDA 466
            Y NV RI  PL  T EDA
Sbjct: 392 PYYNVLRILVPL--TIEDA 408

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score =  182 bits (462), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 189/379 (49%), Gaps = 10/379 (2%)
Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
           ++D  GR YLD  GG A +  GH HP VV ++  Q+K++ H+    L +    +  E + 
Sbjct: 35  VWDVEGREYLDFAGGQAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
            K+PG+  K      +G+EA E A+ +AR  T  +  I+   AYHG    T+  T + N 
Sbjct: 95  QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
                 ++   V+ AL P P  G+  ++ +  A   +   +      +A  + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
           G    +P ++  +     + G + IADEVQ+G  RTG+ F   E  GV PD+ T AK I 
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
            G PL  V    E+ + +       T+ GNP+   A   VLKV +++ L   A+ +G  L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG 447
           K+ L A+ +K+  IGDVRG G ++ +E   D     P    T  I+ + ++ G+++   G
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCG 391
Query: 448 FYGNVFRITPPLCFTKEDA 466
            Y NV RI  PL  T EDA
Sbjct: 392 PYYNVLRILVPL--TIEDA 408

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/402 (33%), Positives = 203/402 (50%), Gaps = 5/402 (1%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G+   L +ENGR  +D  G       G+ HP +V ++         +T+L  ++
Sbjct: 39  PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 98
Query: 142 AIA-DFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
           A A   AE L +  PG     ++F +SG++ANE A       TG + +I+   AYHG   
Sbjct: 99  APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 158
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG-ADGEMYAKDVQDLIDFGTSGHVAGF 258
           G+M  +  S         G+     PDPYR       G+     + + +    +G +   
Sbjct: 159 GSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAA 218
Query: 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318
             E IQ  GG+I    G+L       +  G L + DEV+ G AR+G     FE  G VPD
Sbjct: 219 FIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPD 277
Query: 319 IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378
           I+ + KG+G G+PL AV+   EI +  +      T  GNP+  AAG AVL+ I +D L  
Sbjct: 278 ILVLGKGLGGGLPLSAVIAPAEILDCASA-FAMQTLHGNPISAAAGLAVLETIDRDDLPA 336
Query: 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE 438
            A   G  L++ L+ L  ++ +IGD+RGRG   G+E V DRQ + PA+AET  ++ +  +
Sbjct: 337 MAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQ 396
Query: 439 MGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           +G++V   G  GNV   TPPL  T+ D    +D++D + S++
Sbjct: 397 LGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL 438

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score =  179 bits (453), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/402 (33%), Positives = 203/402 (50%), Gaps = 5/402 (1%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G+   L +ENGR  +D  G       G+ HP +V ++         +T+L  ++
Sbjct: 26  PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 142 AIA-DFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
           A A   AE L +  PG     ++F +SG++ANE A       TG + +I+   AYHG   
Sbjct: 86  APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 145
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG-ADGEMYAKDVQDLIDFGTSGHVAGF 258
           G+M  +  S         G+     PDPYR       G+     + + +    +G +   
Sbjct: 146 GSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAA 205
Query: 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318
             E IQ  GG+I    G+L       +  G L + DEV+ G AR+G     FE  G VPD
Sbjct: 206 FIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPD 264
Query: 319 IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378
           I+ + KG+G G+PL AV+   EI +  +      T  GNP+  AAG AVL+ I +D L  
Sbjct: 265 ILVLGKGLGGGLPLSAVIAPAEILDCASA-FAMQTLHGNPISAAAGLAVLETIDRDDLPA 323
Query: 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE 438
            A   G  L++ L+ L  ++ +IGD+RGRG   G+E V DRQ + PA+AET  ++ +  +
Sbjct: 324 MAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQ 383
Query: 439 MGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           +G++V   G  GNV   TPPL  T+ D    +D++D + S++
Sbjct: 384 LGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL 425

>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453

Iteration: 1
 Score =  176 bits (446), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/423 (33%), Positives = 205/423 (48%), Gaps = 11/423 (2%)
Query: 57  GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           GP + E+ A++++ ++  +    + P+ VV      L D +G + +D   GIA    G+ 
Sbjct: 28  GPISQELQARKQSAVAAGVG--VTLPVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNS 85
Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGN-LKVVFFTNSGTEANELA 174
            P VVD++  Q+    H+  +   +      AE L    PG+  K     NSG EA E A
Sbjct: 86  APAVVDAVTQQVAAFTHTCFMVTPYEGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENA 145
Query: 175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-WK--FNVVQTGVHHALNPDPYRGV 231
           + +AR YT    ++   +AYHG    TM  TA++  +K  F      V+      P+R  
Sbjct: 146 VKIARAYTRRQAVVVFDHAYHGRTNLTMAMTAKNQPYKHGFGPFANEVYRVPTSYPFRD- 204
Query: 232 FGADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL 290
              DG   A    DLI+    + +VA  + E + G GG +  APG+L A+ K     G +
Sbjct: 205 GETDGAAAAAHALDLINKQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAV 264
Query: 291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY 350
            +ADEVQ GFARTG+ F   E   VVPD++  AKGI  G+PL AV    EI +       
Sbjct: 265 FVADEVQTGFARTGALF-ACEHENVVPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGL 323
Query: 351 FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
             T+GGNP+  AA  AV+  I+++ L   A  +G  +  RL AL      IG+VRGRG +
Sbjct: 324 GGTYGGNPLACAAALAVIDTIERENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAM 383
Query: 411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLV 470
           + VE V     + P    T  +       G++V   G YGNV R  PPL       D  +
Sbjct: 384 IAVELVKPGTTE-PDADLTKRVAAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGL 442
Query: 471 DVM 473
           D++
Sbjct: 443 DIL 445

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score =  174 bits (441), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 187/398 (46%), Gaps = 36/398 (9%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P   V G+   L+D+ G+ Y+D  GGIA    GH HP + +++  Q  +  H+   Y N 
Sbjct: 22  PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNE 81
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYH 195
            +   A+ L      +   VFF NSG EANE A+ +AR +      +  + I++ +NA+H
Sbjct: 82  PVLRLAKKLIDATFADR--VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFH 139
Query: 196 GNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
           G    T+ A  Q  +   F  +   + HA   D                   LID  T  
Sbjct: 140 GRTLFTVSAGGQPAYSQDFAPLPADIRHAAYND-------------INSASALIDDST-- 184
Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313
                + E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +
Sbjct: 185 --CAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE-LYAYMHY 241
Query: 314 GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK 373
           GV PD++T AK +G G P+GA++ T E A V+T   +  T+GGNP+ +A    VL++I  
Sbjct: 242 GVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT 301
Query: 374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM 433
            ++ N       +  ERL  +  +YG+  +VRG G L+G     D         +   I 
Sbjct: 302 PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADY------AGQAKQIS 355
Query: 434 DKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD 471
            +  + GV+V   G  GNV R  P L  ++E+    +D
Sbjct: 356 QEAAKAGVMVLIAG--GNVVRFAPALNVSEEEVTTGLD 391

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/433 (31%), Positives = 210/433 (48%), Gaps = 17/433 (3%)
Query: 57  GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           GP +  ++ ++ T ++  +    + P+  V      + D +G R +D   GIA    G+ 
Sbjct: 21  GPRSQALIDRKGTAVARGVG--TTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNS 78
Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP--GNLKVVFFTNSGTEANEL 173
            P VV+++ +Q+    H+  +   +       E L    P  G+ +   F NSG+EA E 
Sbjct: 79  APKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALF-NSGSEAVEN 137
Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYRG 230
           A+ +AR +T    +++  +AYHG    TM  TA+       F      ++ A    P+R 
Sbjct: 138 AVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRD 197
Query: 231 V-FG----ADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
             FG     DGE+ AK    +ID    + ++A  + E IQG GG I  A G+LP +    
Sbjct: 198 AEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWC 257
Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           +K   + IADEVQ GFARTG+ F   E  G+ PD++  A GI  G+PL AV    EI + 
Sbjct: 258 RKNDVVFIADEVQTGFARTGAMF-ACEHEGIDPDLIVTAXGIAGGLPLSAVTGRAEIMDS 316
Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   T+GGNP+  AA  A ++ I+ + L   A  +   +K+RL  L+ +   IGDV
Sbjct: 317 PHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDV 376
Query: 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE 464
           RGRG ++ +E V     + P    T  +       GV+V   G YGNV R  PPL    +
Sbjct: 377 RGRGAMIAMELVKAGTTE-PDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDD 435
Query: 465 DADYLVDVMDYSL 477
             +  +DV++  L
Sbjct: 436 LLNEGLDVLEEVL 448

>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 178/386 (46%), Gaps = 32/386 (8%)
Query: 86  VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIAD 145
           V GK   ++D+ G+ Y+D  GGIA    GHCHP +V+++ +Q + + H++ ++ N     
Sbjct: 44  VKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALR 103
Query: 146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHGNAA 199
               L        + V F NSGTEANE A  +AR Y           II+  NA+HG + 
Sbjct: 104 LGRKLIDAT--FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSL 161
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL 259
            T+    Q  +              P P   +     +++A  V+ ++D     H    +
Sbjct: 162 FTVSVGGQPKYS---------DGFGPKPADIIHVPFNDLHA--VKAVMD----DHTCAVV 206
Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
            E IQG GG+    P +L  +     +   L + DEVQ G  RTG  F  +  +GV PDI
Sbjct: 207 VEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDI 265
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN 379
           +T AK +G G P+ A++TT EIA      ++ +T+GGNP+  A   A   +I   ++   
Sbjct: 266 LTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQG 325
Query: 380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM 439
            H       + L A+ +++ I  D+RG G L+G E      LK   K      +    E 
Sbjct: 326 IHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAE------LKPKYKGRARDFLYAGAEA 379
Query: 440 GVLVGKGGFYGNVFRITPPLCFTKED 465
           GV+V   G   +V R  P L   + D
Sbjct: 380 GVMVLNAG--ADVMRFAPSLVVEEAD 403

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 204/418 (48%), Gaps = 44/418 (10%)
Query: 73  PSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRI 131
           P LF     PL +  G+  +++D +G +YLD   GI     G   HP V+   + Q++++
Sbjct: 21  PELF-----PLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKL 75
Query: 132 QHSTVL-YLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIIS 189
            H+    + N    + A+ L +  PGN  K VFF+NSGTEA E +I + +  TG   II+
Sbjct: 76  AHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVK-NTGRKYIIA 134
Query: 190 LRNAYHGNAAGTMGATAQSNWKFNVV---QTGVHHALNPDPYRGVFGADG-EMYAKDVQD 245
               +HG   G++  TA    + ++V     GV H   P+PYR  +  +G E  ++ V  
Sbjct: 135 FLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNR 194
Query: 246 LIDFGTS---------GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
           +I+F              VAG   E IQG GG +     +   + K  KK G L + DEV
Sbjct: 195 VIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEV 254
Query: 297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFG 355
           Q G  RTG  F   E    VPD++T+AK +G GI P+GA +   ++        + NTFG
Sbjct: 255 QMGLGRTGKLF-AIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD--FKPGMHSNTFG 311
Query: 356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           GN +  A G  V+ +++   L  + + +G    E L  L D      DVRG G   G+E+
Sbjct: 312 GNALACAIGSKVIDIVK--DLLPHVNEIGKIFAEELQGLAD------DVRGIGLAWGLEY 363
Query: 416 VTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
             +++++     E+        + G+L+   G   +  R+ PPL  ++E+A   +D++
Sbjct: 364 -NEKKVRDRIIGESF-------KRGLLLLPAG--RSAIRVIPPLVISEEEAKQGLDIL 411

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/425 (31%), Positives = 200/425 (47%), Gaps = 22/425 (5%)
Query: 55  YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG 114
           + GP +  +  +R   ++  +      P+ V D     + D +G  ++D   GIA    G
Sbjct: 22  FPGPKSQALAERRSAVVAAGVAS--GVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVG 79
Query: 115 HCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGN-LKVVFFTNSGTEANE 172
              P VV ++        H+  +   +       E L    PG+  K     NSG EA E
Sbjct: 80  ASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVE 139
Query: 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYR 229
            A+ +ARL TG + +++  +AYHG    TM  TA++      F      V+      P+R
Sbjct: 140 NAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFR 199
Query: 230 G----VFGADGEMYAKDVQDLIDFGTSG-HVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
                + GA+    AK    +I+    G  VA  + E IQG GG I  A G+LPA+ +  
Sbjct: 200 EENPEITGAEA---AKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWA 256
Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
           K+ G + IADEVQ+GF RTG  F   +  GVVPDI+TMAKGI  G+PL A+    ++ + 
Sbjct: 257 KEKGIVFIADEVQSGFCRTGEWF-AVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDA 315
Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-----G 399
           +       T+GGNPV  AA  A +  +++  L   A  +      +L  L  +       
Sbjct: 316 VHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGS 375
Query: 400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPL 459
           ++GD+RGRG +L +E V     K P    T  +     + GV++   G YGNV R+ PPL
Sbjct: 376 VVGDIRGRGAMLAIELVQPGS-KEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPL 434
Query: 460 CFTKE 464
             + E
Sbjct: 435 VISDE 439

>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478

Iteration: 1
 Score =  155 bits (393), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 195/423 (46%), Gaps = 34/423 (8%)
Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
           V  G+  Y+ D NGRRYLDA  G+  +  G  H  ++D+   Q +R    H+    ++  
Sbjct: 47  VTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQ 106
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
               +E L    P +   VF+TNSG+EAN+  + M               I++  NAYHG
Sbjct: 107 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 166
Query: 197 NAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
             A +   T +  N  F +   G  H   P  +R  +G +GE         A+++++ I 
Sbjct: 167 VTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWR--YGEEGETEEQFVARLARELEETIQ 224
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
              +  +AGF +E + G GG+I  A GY  A+   ++K     I+DEV  GF RTG+  W
Sbjct: 225 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT-W 283
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
           G   +   PD +  +K +  G  P+GAV+  PE++       E +    +  T  G+PV 
Sbjct: 284 GCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVG 343
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A     + V+  + L  N   +    +ERL  + ++   IG+ RG GF+  +E V D+ 
Sbjct: 344 CAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFMWALEAVKDKA 402
Query: 421 LKTPAKAE---TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
            KTP       +  I +   ++G++       G    + PP   T+   D + D ++ +L
Sbjct: 403 SKTPFDGNLSVSERIANTCTDLGLICRP---LGQSVVLCPPFILTEAQMDEMFDKLEKAL 459
Query: 478 SKM 480
            K+
Sbjct: 460 DKV 462

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score =  154 bits (389), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 188/402 (46%), Gaps = 37/402 (9%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+ +  GK  +++D   RRY D     ++V  GHCHP ++++++NQ K++   +  + + 
Sbjct: 29  PVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMINQAKKLTICSRAFFSD 88
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNA 193
           ++    E   + + G  KV+   N+G EA+E A  + R +             II   N 
Sbjct: 89  SLG-VCERYLTNLFGYDKVLMM-NTGAEASETAYKLCRKWGYEVKKIPENSAKIIVCNNN 146
Query: 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
           + G   G + A+     K N           P+ +  V   D E   K++QD        
Sbjct: 147 FSGRTLGCVSASTDKKCKNNF------GPFVPN-FLKVPYDDLEALEKELQD-------P 192
Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313
           +V  F+ E +QG  G+I  +  Y P V    KK   L +ADEVQ G  RTG        +
Sbjct: 193 NVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHH-Y 251
Query: 314 GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ 372
           GV PD++ + K +  G  P+ A++   ++  VL    + +T+GGNP+  A     LKV+ 
Sbjct: 252 GVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPLAAAICVEALKVLI 311
Query: 373 KDKLQNNAHVVGS-YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLY 431
            +KL  NA  +G+ +L+     LKD   ++ +VRG+G L  +EF  D             
Sbjct: 312 NEKLCENADKLGAPFLQNLKEQLKDS-KVVREVRGKGLLCAIEFKNDL-------VNVWD 363
Query: 432 IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
           I  K KE G++      +    R+TPPLC TKE  D   +++
Sbjct: 364 ICLKFKENGLIT--RSVHDKTVRLTPPLCITKEQLDECTEII 403

>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  154 bits (389), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 193/421 (45%), Gaps = 30/421 (7%)
Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
           V  G+  Y+ D NGRRYLDA  G+  +  G  H  ++D+   Q +R    H+    ++  
Sbjct: 53  VTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAAFGKMSDQ 112
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
               +E L    P +   VF+TNSG+EAN+  + M               I++  NAYHG
Sbjct: 113 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 172
Query: 197 NAAGTMGATA-QSNWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
             A +   T    N  F +   G  H   P  +R  +G +GE         A+++++ I 
Sbjct: 173 ATAVSASMTGFPYNSVFGLPLPGFVHLTCPHYWR--YGEEGETEEQFVARLARELEETIQ 230
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
              +  +AGF +E + G GG+I  A GY  A+   ++K     I+DEV  GF RTG+  W
Sbjct: 231 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNT-W 289
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
           G   +   PD +  +  +  G  P+GAV+  PE++       E +    +  T  G+PV 
Sbjct: 290 GCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVG 349
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A     + V+  + L  N   +    +ERL  + ++   IG+ RG GF+  +E V D+ 
Sbjct: 350 CAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFMWALEAVKDKA 408
Query: 421 LKTPAKAETLYIMDKMKEMGVLVGKGGF-YGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
            KTP     L + +++      +G   F  G    + PP   T+   D + D ++ +L K
Sbjct: 409 SKTPFDG-NLSVSERIANTCTDLGLICFPLGQSVVLCPPFILTEAQMDEMFDKLEKALDK 467
Query: 480 M 480
           +
Sbjct: 468 V 468

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 187/409 (45%), Gaps = 51/409 (12%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+ +   K  +++D N +RY D     ++V  GHCHP ++++++NQ K +   +  + + 
Sbjct: 48  PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNA 193
            +    E   + + G  KV+   N+G EANE A  + R +             I+  +N 
Sbjct: 108 PLG-ICERYLTNLLGYDKVLMM-NTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNN 165
Query: 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK----DVQDLIDF 249
           + G   G + A+       N                  FG     ++K    D++ L + 
Sbjct: 166 FSGRTLGCISASTTKKCTSN------------------FGPFAPQFSKVPYDDLEALEEE 207
Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
               +V  F+ E IQG  G+I  +  YL  VY   KK   L +ADEVQ G  RTG     
Sbjct: 208 LKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLC 266
Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
              + V PD++ + K +  G  P+ AV+   +I  V+    + +T+GGNP+  +     L
Sbjct: 267 VHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEAL 326
Query: 369 KVIQKDKLQNNAHVVGSYLKERLT-ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA 427
            V+  +KL  NA  +G    E L   LKD   I+ DVRG+G L  +EF          K 
Sbjct: 327 NVLINEKLCENAEKLGGPFLENLKRELKDS-KIVRDVRGKGLLCAIEF----------KN 375
Query: 428 ETLYIMD---KMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
           E + ++D   K+KE G++      +    R+TPPLC TKE  D   +++
Sbjct: 376 ELVNVLDICLKLKENGLITRD--VHDKTIRLTPPLCITKEQLDECTEII 422

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 200/415 (48%), Gaps = 38/415 (9%)
Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLNH--AIADFAE 148
           +L D  G   LDA  G+  V  G+    + +    Q++ + + +T     H  AIA  A+
Sbjct: 48  WLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIA-LAQ 106
Query: 149 ALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND------IISLRNAYHGN--AAG 200
            LA   PG+L  VFF   G+EAN+  I M R Y           IIS +NAYHG+  A+ 
Sbjct: 107 KLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASS 166
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLIDFGTSGHVA 256
            +G  A  + +  ++   VHH   P+ +      D E +    A+++++ I       VA
Sbjct: 167 ALGGMAGMHAQSGLIPD-VHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVA 225
Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV 316
            F++E +QG GG+I     Y P + +   K   L IADEV  GF RTG+ F G +  G+ 
Sbjct: 226 AFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWF-GTQTMGIR 284
Query: 317 PDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQK 373
           P I+T+AKG+ +G  P+G  +   E+A V+ +   N+  T+ G+PV  A     L+++++
Sbjct: 285 PHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE 344
Query: 374 DKLQNNA-HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYI 432
           + + ++  +V   YLKE+  AL D + ++G+ +  G +  +         TP KA     
Sbjct: 345 ENILDHVRNVAAPYLKEKWEALTD-HPLVGEAKIVGMMASIAL-------TPNKASRAKF 396
Query: 433 MDKMKEMGVLVGKGGFYGNVFR--------ITPPLCFTKEDADYLVDVMDYSLSK 479
             +   +G +  +  F  N+          I+PPL  T  + D +   +  SL +
Sbjct: 397 ASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDE 451

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 38/388 (9%)
Query: 88  GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFA 147
           G+  YLFD+  ++YLD   GI     G+ H      I  Q+ ++ H++ LY N  IA  A
Sbjct: 25  GQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIA--A 82
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDI-----ISLRNAYHGNAAGTM 202
            A        L+ VFFTNSGTE+ E A   AR Y     +     I+ ++++HG   G +
Sbjct: 83  AAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNKGVKGGQFIAFKHSFHGRTLGAL 142
Query: 203 GATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS 260
             TA   ++  F  + +GV  A   D                V+ L++  T       + 
Sbjct: 143 SLTANEKYQKPFKPLISGVKFAKYND-------------ISSVEKLVNEKT----CAIIL 185
Query: 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV 320
           ES+QG GGI      +  A+ K   +   L IADE+Q G  R+G  F+ +E   ++PDI 
Sbjct: 186 ESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGK-FFAYEHAQILPDIX 244
Query: 321 TMAKGIGNGIPLGAVVTTPEIA-EVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN 379
           T AK +G G+ +GA V   ++A   L   ++ +T+GGNP+  A  +AV ++ +++K+  N
Sbjct: 245 TSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILEN 304
Query: 380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM 439
            + +  YL++ L  L +++      +G GF  G+    D+ +K         ++ K +E 
Sbjct: 305 VNKLTPYLEQSLDELINEFDFCKKRKGLGFXQGLSL--DKSVKVAK------VIQKCQEN 356
Query: 440 GVLVGKGGFYGNVFRITPPLCFTKEDAD 467
            +L+   G   N  R  PPL   KE  D
Sbjct: 357 ALLLISCG--ENDLRFLPPLILQKEHID 382

>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 200/425 (47%), Gaps = 31/425 (7%)
Query: 58  PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           P++D+I  +   +      + +  P+ +  GK  YL+D  GR+Y D    I+ V  GHCH
Sbjct: 38  PTSDDIFEREYKY---GAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCH 94
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P +V+++ +Q+ ++  ++  + N+ + ++ E +      N   V   N+G EA E A  +
Sbjct: 95  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
           AR +      I    A    AAG       S          +  + +P  Y G    + G
Sbjct: 153 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 203
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            D   Y  D+  L       +VA F+ E IQG  G++   PGYL  V +   +   L IA
Sbjct: 204 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 262
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
           DE+Q G ARTG  +   +   V PDIV + K +  G+ P+ AV+   +I   +    +F+
Sbjct: 263 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFS 321
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
           T+GGNP+      A L+V++++ L  NA  +G  L+  L  L     ++  VRG+G L  
Sbjct: 322 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLLNA 379
Query: 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV 472
           +       +K     +   +  ++++ G+L      +G++ R  PPL   +++    +++
Sbjct: 380 I------VIKETKDWDAWKVCLRLRDNGLLAKPT--HGDIIRFAPPLVIKEDELRESIEI 431
Query: 473 MDYSL 477
           ++ ++
Sbjct: 432 INKTI 436

>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 189/423 (44%), Gaps = 34/423 (8%)
Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
           V  G+  Y+ D NGRRYLDA  G+     G  H  ++D+   Q +R    H+     +  
Sbjct: 53  VTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAFFGRXSDQ 112
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
               +E L    P +   VF+TNSG+EAN+  +                 I++  NAYHG
Sbjct: 113 TVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNAYHG 172
Query: 197 NAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
             A +   T +  N  F +   G  H   P  +R  +G +GE         A+++++ I 
Sbjct: 173 VTAVSASXTGKPYNSVFGLPLPGFVHLTCPHYWR--YGEEGETEEQFVARLARELEETIQ 230
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
              +  +AGF +E + G GG+I  A GY  A+   ++K     I+DEV  GF RTG+  W
Sbjct: 231 REGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT-W 289
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
           G   +   PD +  +K +  G  P GAV+  PE++       E +    +  T  G+PV 
Sbjct: 290 GCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVG 349
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A     + V+  + L  N   +    +ERL  + ++   IG+ RG GF   +E V D+ 
Sbjct: 350 CAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFXWALEAVKDKA 408
Query: 421 LKTPAKAE---TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
            KTP       +  I +   ++G++       G    + PP   T+   D   D ++ +L
Sbjct: 409 SKTPFDGNLSVSERIANTCTDLGLICRP---LGQSVVLCPPFILTEAQXDEXFDKLEKAL 465
Query: 478 SKM 480
            K+
Sbjct: 466 DKV 468

>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 207/414 (50%), Gaps = 31/414 (7%)
Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEAL 150
           Y+  E+GRR +D   G+     G+    +VD++ +Q   + +++  Y+     A  AE +
Sbjct: 47  YVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKI 106
Query: 151 ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHGNAAGTMGA 204
           A+  PG+L  +FFT  G+ A + A+  +  Y           II   + YHG+ A T   
Sbjct: 107 ATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAAC 166
Query: 205 TAQS-NW-KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV----QDLIDFGTSGHVAGF 258
           T ++ NW  F++ Q  +    +P+P R       E +  D+    +D I+      +A F
Sbjct: 167 TGRTGNWPNFDIAQDRISFLSSPNP-RHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAF 225
Query: 259 LSESIQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP 317
           L+E I   GG+I    GY  A +K+I +K   L I+DEV  GF R G  F   +  GVVP
Sbjct: 226 LAEPILASGGVIIPPAGY-HARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVP 284
Query: 318 DIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN----YFN---TFGGNPVCTAAGHAVLK 369
           DI+T AKG+ +G +PLG +  +  +   ++  N    +F    T+   PV  AA  A ++
Sbjct: 285 DIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIE 344
Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD--RQLKTPA-K 426
           +++++ + + A  +  Y    L +L+D  G + + R  G +  V+ + D  R   T   K
Sbjct: 345 LMEREGIVDQAREMADYFAAALASLRDLPG-VAETRSVGLVGCVQCLLDPTRADGTAEDK 403
Query: 427 AETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
           A TL I ++  E+G++V      G++  I+PPL  ++   D +V +M  +++++
Sbjct: 404 AFTLKIDERCFELGLIVRP---LGDLCVISPPLIISRAQIDEMVAIMRQAITEV 454

>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 193/423 (45%), Gaps = 34/423 (8%)
Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
           V  G+  Y+ D +GRRYLDA  G+  +  G  H  ++++   Q  R    H+    ++  
Sbjct: 45  VTHGEGPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAFFGRMSDQ 104
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
               +E L    P +   VF+TNSG+EAN+  + M               I++  NAYHG
Sbjct: 105 TVMLSEKLVEVSPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 164
Query: 197 NAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
             A +   T +  N  F +   G  H   P  +R  +G +GE         A++++D I 
Sbjct: 165 VTAVSASMTGKPYNSVFGLPLPGFIHLTCPHYWR--YGEEGETEAQFVARLARELEDTIT 222
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
              +  +AGF +E + G GG+I  A GY  A+   ++K     I+DEV  GF RTG+  W
Sbjct: 223 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNT-W 281
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
           G   +  +PD +  +  +  G  P+GAV+  P++A       E +    +  T  G+PV 
Sbjct: 282 GCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVG 341
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
            A     + V+  + L  N   +    +  L  + D+   IG+ RG GF+  +E V D+ 
Sbjct: 342 CAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADRPN-IGEYRGIGFMWALEAVKDKP 400
Query: 421 LKTPAKAE---TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
            KTP  A    +  I +   ++G++       G    + PP   T+   D + + ++ +L
Sbjct: 401 TKTPFDANLSVSERIANTCTDLGLICRP---LGQSIVLCPPFILTEAQMDEMFEKLEKAL 457
Query: 478 SKM 480
            K+
Sbjct: 458 DKV 460

>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439

Iteration: 1
 Score =  145 bits (366), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 199/425 (46%), Gaps = 31/425 (7%)
Query: 58  PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           P++D+I  +   +      + +  P+ +  GK  YL+D  GR+Y D    I+ V  GHCH
Sbjct: 38  PTSDDIFEREYKY---GAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCH 94
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P +V+++ +Q+ ++  ++  + N+ + ++ E +      N   V   N+G EA E A  +
Sbjct: 95  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
           AR +      I    A    AAG       S          +  + +P  Y G    + G
Sbjct: 153 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 203
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            D   Y  D+  L       +VA F+ E IQG  G++   PGYL  V +   +   L IA
Sbjct: 204 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 262
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
           DE+Q G ARTG  +   +   V PDIV + K +  G+ P+ AV+   +I   +    + +
Sbjct: 263 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGS 321
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
           T+GGNP+      A L+V++++ L  NA  +G  L+  L  L     ++  VRG+G L  
Sbjct: 322 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLLNA 379
Query: 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV 472
           +       +K     +   +  ++++ G+L      +G++ R  PPL   +++    +++
Sbjct: 380 I------VIKETKDWDAWKVCLRLRDNGLLAKPT--HGDIIRFAPPLVIKEDELRESIEI 431
Query: 473 MDYSL 477
           ++ ++
Sbjct: 432 INKTI 436

>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 199/425 (46%), Gaps = 31/425 (7%)
Query: 58  PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           P++D+I  +   + + +   L   P+ +  GK  YL+D  GR+Y D     + V  GHCH
Sbjct: 1   PTSDDIFEREYKYGAHNYHPL---PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCH 57
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P +V+++ +Q+ ++  ++  + N+ + ++ E +      N   V   N+G EA E A  +
Sbjct: 58  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 115
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
           AR +      I    A    AAG       S          +  + +P  Y G    + G
Sbjct: 116 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 166
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            D   Y  D+  L       +VA F+ E IQG  G++   PGYL  V +   +   L IA
Sbjct: 167 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 225
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
           DE+Q G ARTG  +   +   V PDIV + K +  G+ P+ AV+   +I   +    + +
Sbjct: 226 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGS 284
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
           T+GGNP+      A L+V++++ L  NA  +G  L+  L  L     ++  VRG+G L  
Sbjct: 285 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLLNA 342
Query: 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV 472
           +       +K     +   +  ++++ G+L      +G++ R  PPL   +++    +++
Sbjct: 343 I------VIKETKDWDAWKVCLRLRDNGLLAKPT--HGDIIRFAPPLVIKEDELRESIEI 394
Query: 473 MDYSL 477
           ++ ++
Sbjct: 395 INKTI 399

>pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 199/425 (46%), Gaps = 31/425 (7%)
Query: 58  PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           P++D+I  +   + + +   L   P+ +  GK  YL+D  GR+Y D     + V  GHCH
Sbjct: 38  PTSDDIFEREYKYGAHNYHPL---PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCH 94
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P +V+++ +Q+ ++  ++  + N+ + ++ E +      N   V   N+G EA E A  +
Sbjct: 95  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
           AR +      I    A    AAG       S          +  + +P  Y G    + G
Sbjct: 153 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 203
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            D   Y  D+  L       +VA F+ E IQG  G++   PGYL  V +   +   L IA
Sbjct: 204 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 262
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
           DE+Q G ARTG  +   +   V PDIV + K +  G+ P+ AV+   +I   +    + +
Sbjct: 263 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGS 321
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
           T+GGNP+      A L+V++++ L  NA  +G  L+  L  L     ++  VRG+G L  
Sbjct: 322 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLLNA 379
Query: 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV 472
           +       +K     +   +  ++++ G+L      +G++ R  PPL   +++    +++
Sbjct: 380 I------VIKETKDWDAWKVCLRLRDNGLLAKPT--HGDIIRFAPPLVIKEDELRESIEI 431
Query: 473 MDYSL 477
           ++ ++
Sbjct: 432 INKTI 436

>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 192/410 (46%), Gaps = 47/410 (11%)
Query: 82  PLNVVDGKMQ--YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL 139
           PL +V  K +  ++ D  G RY+D     + V  GH HP +++++++Q  R+  ++  + 
Sbjct: 17  PLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFH 76
Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--------GCNDIISLR 191
           +  +  + E +A     N ++V   N+G EA E AI  AR +            +II   
Sbjct: 77  SDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCE 134
Query: 192 NAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
           + +HG   G +  ++   +K  F  +  G+       PY       G++ A      +  
Sbjct: 135 DNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI----PY-------GDLEA------LKA 177
Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
             + + A F+ E IQG  GI     G+L    +  KK   L +ADE+Q G  RTG  F  
Sbjct: 178 AITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-A 236
Query: 310 FEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
            +   V PD+  +   +G G+ P+       +I  V    ++ +TFGGNP+  A   A L
Sbjct: 237 CDWDNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAAL 296
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAE 428
           +V++++KL   +  +G  L  +L  + +   +I +VRG+G  +G+E      L  PA+  
Sbjct: 297 EVLEEEKLTERSLQLGEKLVGQLKEIDNP--MITEVRGKGLFIGIE------LNEPARP- 347
Query: 429 TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
                +++K  G+L  +   + NV RI PPL  ++ED ++    +   LS
Sbjct: 348 ---YCEQLKAAGLLCKE--THENVIRIAPPLVISEEDLEWAFQKIKAVLS 392

>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 192/424 (45%), Gaps = 32/424 (7%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G    + D NG+ Y D F  +     GH    + D+I  Q+ +I HST+L + +
Sbjct: 27  PLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTN 86
Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAY 194
             A   AE L    P  L  VF+++SG EA E+A+ MA  Y            I+++N Y
Sbjct: 87  VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGY 146
Query: 195 HGNAAG--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252
           HG+  G  ++G+    +  +  +    + A  P  YR   G   E   + +++L      
Sbjct: 147 HGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQXLRELAQLLEE 206
Query: 253 GH--VAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
            H  +A    ES +QG  G+I +  GYL  V +       L I DEV  GF RTG  F  
Sbjct: 207 HHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-A 265
Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-----TRRNYF--NTFGGNPVCT 361
            E   V PD++   KGI  G +P+     T +I +         + +F  +++ GN +  
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI--IGDVRGRGFLLGVEFVTDR 419
           A     L + +    +N    V    K+    L+D + +  +GD+R  GF+ G E V  +
Sbjct: 326 AVALENLALFES---ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSK 382
Query: 420 QLKTPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476
           + K P  A+      +  KM+E+G+L       G+V    PPL  T E+   +V +M  +
Sbjct: 383 ETKEPYPADRRIGYKVSLKMRELGMLTRP---LGDVIAFLPPLASTAEELSEMVAIMKQA 439
Query: 477 LSKM 480
           + ++
Sbjct: 440 IHEV 443

>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  135 bits (341), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 192/424 (45%), Gaps = 32/424 (7%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G    + D NG+ Y D F  +     GH    + D+I  Q+ +I HST+L + +
Sbjct: 27  PLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTN 86
Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAY 194
             A   AE L    P  L  VF+++SG EA E+A+ MA  Y            I+++N Y
Sbjct: 87  VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGY 146
Query: 195 HGNAAG--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252
           HG+  G  ++G+    +  +  +    + A  P  YR   G   E   + +++L      
Sbjct: 147 HGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEE 206
Query: 253 GH--VAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
            H  +A    ES +QG  G+I +  GYL  V +       L I DEV  GF RTG  F  
Sbjct: 207 HHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-A 265
Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-----TRRNYF--NTFGGNPVCT 361
            E   V PD++   KGI  G +P+     T +I +         + +F  +++ GN +  
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI--IGDVRGRGFLLGVEFVTDR 419
           A     L + +    +N    V    K+    L+D + +  +GD+R  GF+ G E V  +
Sbjct: 326 AVALENLALFES---ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSK 382
Query: 420 QLKTPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476
           + K P  A+      +  KM+E+G+L       G+V    PPL  T E+   +V +M  +
Sbjct: 383 ETKEPYPADRRIGYKVSLKMRELGMLTRP---LGDVIAFLPPLASTAEELSEMVAIMKQA 439
Query: 477 LSKM 480
           + ++
Sbjct: 440 IHEV 443

>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449

Iteration: 1
 Score =  131 bits (329), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 190/427 (44%), Gaps = 40/427 (9%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P  +V  +  +L D+ GR+  D+  G+ T   GH    + +++  Q+  + +S      H
Sbjct: 33  PRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGH 92
Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAY 194
            ++   AE +    PGNL  VFFT+SG+E    A+ M R Y           +I     Y
Sbjct: 93  PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGY 152
Query: 195 HG-NAAGTMGATAQSNWKF-----NVVQTGVHHALNPDPY-RGVFGADGEMYAKDVQDLI 247
           HG N AGT       N K        V    H  L  + Y RG+    G   A ++  LI
Sbjct: 153 HGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLI 212
Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
           +   + ++A    E + G  G++    GYL    +   +   L + DEV  GF RTGS F
Sbjct: 213 ELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF 272
Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR---------NYFNTFGGN 357
            G ++ GV PD++ +AK + NG IP+GAV+ + EI +    +          +  T+  +
Sbjct: 273 -GADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAH 331
Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT 417
           PV  AAG A L ++QK+ L  +   V  + ++ L  +K    +I D+R  G    ++   
Sbjct: 332 PVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVI-DIRNFGLAGAIQIA- 389
Query: 418 DRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVM 473
                 P   + +    +  E G+ + K GFY    G+  +  P      +D D L D +
Sbjct: 390 ------PRDGDAIV---RPFEAGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAV 440
Query: 474 DYSLSKM 480
              L+K+
Sbjct: 441 GEVLNKL 447

>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 192/421 (45%), Gaps = 40/421 (9%)
Query: 88  GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYLNH-AIAD 145
           G+  YL+D  G + +D   G+  V  G+      ++   Q++ +  ++T     H A+ +
Sbjct: 39  GEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVE 98
Query: 146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHGNAA 199
            +  LA   P     VF+TNSG+E+ +  I M R Y           +I   N YHG+  
Sbjct: 99  LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTI 158
Query: 200 G--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD------GEMYAKDVQDLIDFGT 251
           G  ++G     + + ++   G+ H   P  Y+   G D      G + A+ +++ I    
Sbjct: 159 GGASLGGMKYMHEQGDLPIPGMAHIEQPWWYK--HGKDMTPDEFGVVAARWLEEKILEIG 216
Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
           +  VA F+ E IQG GG+I     Y P + +  +K   L +ADEV  GF RTG  F G +
Sbjct: 217 ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWF-GHQ 275
Query: 312 AHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN---TFGGNPVCTAAGHAV 367
             G  PD+ T AKG+ +G +P+GAV     +AE L     FN   T+ G+PVC A  HA 
Sbjct: 276 HFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHAN 335
Query: 368 LKVIQKDKL-QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK 426
           +  ++ + + Q     +G Y+++R      ++  + DVRG G +     V     K  AK
Sbjct: 336 VAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLV-----KNKAK 390
Query: 427 AETLYIMDKMKEMGVLVGKGGFYGNVFR--------ITPPLCFTKEDADYLVDVMDYSLS 478
            E   +     E+G L     F  N+            PPL  T+ + D ++ V +  L 
Sbjct: 391 RE---LFPDFGEIGTLCRDIFFRNNLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLE 447
Query: 479 K 479
           +
Sbjct: 448 E 448

>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 191/421 (45%), Gaps = 35/421 (8%)
Query: 74  SLFHLYSKPLNV-VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132
           ++F+  SKP  V V G+  +L+D+ GRRYLD   G      GH    V + +  Q  R+ 
Sbjct: 3   NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARL- 61
Query: 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFF----TNSGTEANELAIMMARLY------T 182
               ++ +   +D  E  A ++   + +  F     + G+EA E A+ +AR Y       
Sbjct: 62  --PFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP 119
Query: 183 GCNDIISLRNAYHGNAAGTMGAT---AQSNWKFNVVQTGVHHAL-NPDPYRGVFGADGEM 238
           G   +I+   +YHG + G++ A+   A+      +++      L  PDP R     +G  
Sbjct: 120 GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR-----NGAE 174
Query: 239 YAKDVQDLIDFGTSGHVAGFLSESIQGVG-GIIELAPGYLPAVYKSIKKAGGLCIADEVQ 297
            A+ ++ L++      VA F++E + G     +  APGY   V     +AG + IADEV 
Sbjct: 175 DAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVM 234
Query: 298 AGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAE-VLTRRNYFN--- 352
           +G  R GS        GV PDI  + KG+  G  PL  ++  P++ E V+     F    
Sbjct: 235 SGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGF 294
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR---GRGF 409
           T+ G+PV  AAG +VL +++++ L   A   G+ L   L AL+ ++  +  VR       
Sbjct: 295 TYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLG 354
Query: 410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG---FYGNVFRITPPLCFTKEDA 466
           ++  +  T +  +TP  A  +      + +    G G      G+   + PPL  T  + 
Sbjct: 355 VVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEV 414
Query: 467 D 467
           D
Sbjct: 415 D 415

>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 161/353 (45%), Gaps = 35/353 (9%)
Query: 85  VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA 144
           VV  +   L   +GRR +D          G+ HP +  ++ +QI  + H     + HA A
Sbjct: 29  VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGEITHAPA 88
Query: 145 -DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC-----NDIISLRNAYHGNA 198
            +    L +  P  L+ VF  +SG+ A E+A+ MA  Y        +  ++ RN YHG+ 
Sbjct: 89  IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWDAKGEARDRFLTFRNGYHGDT 148
Query: 199 AGTMGATAQSN-----WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--T 251
            G M      N     WK  + +    +   P P   +   DGE    D +D++ F    
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRM---DGEW---DERDMVGFARLM 198
Query: 252 SGH---VAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
           + H   +A  + E I QG GG+    P +L  + K   + G L IADE+  GF RTG  F
Sbjct: 199 AAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF 258
Query: 308 WGFEAHGVVPDIVTMAKGI-GNGIPLGAVVTTPEIAEVLTRRN-----YFNTFGGNPVCT 361
              E   + PDI+ + K + G  + L A +TT E+AE ++        +  TF GNP+  
Sbjct: 259 -ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPLAC 317
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
           AA +A L +++    Q     +   L+E+L   +D   ++ DVR  G +  VE
Sbjct: 318 AAANASLAILESGDWQQQVADIEVQLREQLAPARDAE-MVADVRVLGAIGVVE 369

>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 148/332 (44%), Gaps = 33/332 (9%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQHSTVLYLN 140
           P+    GK  Y +D +G +Y+D       +  GH HP++  +I    +  + + T   L 
Sbjct: 38  PIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALE 97
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN--- 197
                FA+ L    P  L  V F NSGTEA    I +AR YTG   I      YHG+   
Sbjct: 98  ---VKFAKXLKEAXPA-LDKVRFVNSGTEAVXTTIRVARAYTGRTKIXKFAGCYHGHSDL 153
Query: 198 ---AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
              AAG+  +T  +     V Q+     +   P+  V         + +++ +D    GH
Sbjct: 154 VLVAAGSGPSTLGTPDSAGVPQSIAQEVITV-PFNNV---------ETLKEALD--KWGH 201
Query: 255 -VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFE 311
            VA  L E I G  GI+E  PG+L  V + + +AG L I DEV     F   G+     +
Sbjct: 202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFXYGGAQ----D 257
Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV---LTRRNYFNTFGGNPVCTAAGHAVL 368
             GV PD+  +   IG G+P+GA     EI E    L       T  GNP   A+G A L
Sbjct: 258 LLGVTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACL 317
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGI 400
           +V+Q++ L      +G+ L++ +     K+ I
Sbjct: 318 EVLQQEGLYEKLDELGATLEKGILEQAAKHNI 349

>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 172/382 (45%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF RTG  F   E   + PDI+ + K + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 172/382 (45%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF RTG  F   E   + PDI+ + K + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHGN  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGNTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF RTG  F   E   + PDI+ +   + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  F   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--FTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF RTG  F   E   + PDI+ +   + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  108 bits (269), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF  TG  F   E   + PDI+ + K + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGATGKLF-ACEHAEIAPDILCLGKALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN +HG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGFHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF RTG  F   E   + PDI+ +   + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           + D++   ++  L P  +   + PL V   V  +   L   +GRR +D          G+
Sbjct: 2   TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
            HP +  ++ +QI  + H     + HA A +    L +  P  L+ VF  +SG+ A E+A
Sbjct: 60  NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
           + MA  Y           ++ RN YHG+  G M      N     WK  + +    +   
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
           P P   +   DGE    D +D++ F    + H   +A  + E I QG GG+    P +L 
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
            + K   + G L IADE+  GF +TG  F   E   + PDI+ +   + G  + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGKTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
           T E+AE ++        +  TF GNP+  AA +A L +++    Q     +   L+E+L 
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
             +D   ++ DVR  G +  VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369

>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 143/314 (45%), Gaps = 29/314 (9%)
Query: 72  SPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI 131
           SP    +   P  V  G+  YL+  +G R +D       +  GH HP V++++   + R 
Sbjct: 29  SPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR- 87
Query: 132 QHSTVLYLNHAIADFAEALASKMPGNLK---VVFFTNSGTEANELAIMMARLYTGCNDII 188
                 +L  A  +    LA K+ G +K   ++ F NSGTEA   AI +AR YTG + I+
Sbjct: 88  -----GWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLIL 142
Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNV-VQTGVHHALNP----DPYRGVFGADGEMYAKDV 243
                YHG+    + A   +   + V    GV  A+       PY      D E   +  
Sbjct: 143 KFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVF 197
Query: 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART 303
            +  D      +AG + E +    G+I     +L A+ +  +++G L I DEV  GF   
Sbjct: 198 AEYGD-----RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLG 252
Query: 304 GSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFN--TFGGNPVC 360
                G+    +  DI+ + K IG G P+GAV  + E+  +LT +   FN  TF  +P+ 
Sbjct: 253 LEGAQGY--FNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPIT 310
Query: 361 TAAGHAVLKVIQKD 374
            AAG A LK ++++
Sbjct: 311 MAAGLATLKALEEE 324

>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 158/365 (43%), Gaps = 38/365 (10%)
Query: 54  PYDGPSADEILAKRKTFL-----SP--SLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFG 106
           P+    +DEI A  +  +     SP  +   +  +P+     K  Y +D +G RY+D  G
Sbjct: 5   PFKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVG 64
Query: 107 GIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTN 165
                 CGH HP V++++ V   K         L + +A   E +   +P ++++V F N
Sbjct: 65  TWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA---EMVNDAVP-SIEMVRFVN 120
Query: 166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGTMGATAQSNWKFNVVQTGV 219
           SGTEA    + + R YTG + II     YHG+A      AG+  AT        V +   
Sbjct: 121 SGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTT 180
Query: 220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPA 279
            + L   PY  +      ++A++          G +AG + E I G  G I    G+L  
Sbjct: 181 ANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILEPIVGNSGFIVPDAGFLEG 229
Query: 280 VYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 337
           + +   +   L + DEV  GF  A  G      E  GV PD+ T+ K IG G+P+GA   
Sbjct: 230 LREITLEHDALLVFDEVMTGFRIAYGGVQ----EKFGVTPDLTTLGKIIGGGLPVGAYGG 285
Query: 338 TPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL 394
             EI +++          T  GNP+   AG   L+++++         +   L + L A+
Sbjct: 286 KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 345
Query: 395 KDKYG 399
             + G
Sbjct: 346 AQETG 350

>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 158/365 (43%), Gaps = 38/365 (10%)
Query: 54  PYDGPSADEILAKRKTFL-----SP--SLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFG 106
           P+    +DEI A  +  +     SP  +   +  +P+     K  Y +D +G RY+D  G
Sbjct: 5   PFKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVG 64
Query: 107 GIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTN 165
                 CGH HP V++++ V   K         L + +A   E +   +P ++++V F N
Sbjct: 65  TWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA---EMVNDAVP-SIEMVRFVN 120
Query: 166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGTMGATAQSNWKFNVVQTGV 219
           SGTEA    + + R YTG + II     YHG+A      AG+  AT        V +   
Sbjct: 121 SGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTT 180
Query: 220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPA 279
            + L   PY  +      ++A++          G +AG + E I G  G I    G+L  
Sbjct: 181 ANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILEPIVGNSGFIVPDAGFLEG 229
Query: 280 VYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 337
           + +   +   L + DEV  GF  A  G      E  GV PD+ T+ K IG G+P+GA   
Sbjct: 230 LREITLEHDALLVFDEVMTGFRIAYGGVQ----EKFGVTPDLTTLGKIIGGGLPVGAYGG 285
Query: 338 TPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL 394
             EI +++          T  GNP+   AG   L+++++         +   L + L A+
Sbjct: 286 KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 345
Query: 395 KDKYG 399
             + G
Sbjct: 346 AQETG 350

>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424

Iteration: 1
 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 139/311 (44%), Gaps = 44/311 (14%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P  +V G+  Y++D +G RYLD       +  GH HP V+  +   ++R           
Sbjct: 35  PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERG------LTFG 88
Query: 142 AIADFAEALASKMPGN---LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198
           A +    ALA K+      + +V F NSGTEA   A+ +AR YTG   I+  R  YHG+A
Sbjct: 89  APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHA 148
Query: 199 AG----------TMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247
            G          T+G  + +       + T V    +P+  R V    GE          
Sbjct: 149 DGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGE---------- 198
Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
                  +A  + E + G  G++     +L A++++ K  G L IADEV  GF      F
Sbjct: 199 ------EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA---F 248
Query: 308 WG-FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN---YFNTFGGNPVCTAA 363
            G  E  G+ PD+VT+ K +G G+P  A     EI E +          T  GNP+  AA
Sbjct: 249 GGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAA 308
Query: 364 GHAVLKVIQKD 374
           G A L++++++
Sbjct: 309 GLATLELLEEN 319

>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 31/323 (9%)
Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFA 147
           K  Y +D +G RY+D  G      CGH HP V++++ V   K         L + +A   
Sbjct: 42  KDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA--- 98
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGT 201
           E +   +P ++++V F NSGTEA    + + R YTG + II     YHG+A      AG+
Sbjct: 99  EMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGS 157
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
             AT        V +    + L   PY  +      ++A++          G +AG + E
Sbjct: 158 GVATLGLPSSPGVPKKTTANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILE 206
Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDI 319
            I G  G I    G+L  + +   +   L + DEV  GF  A  G      E  GV PD+
Sbjct: 207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQ----EKFGVTPDL 262
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKL 376
            T+ K IG G+P+GA     EI +++          T  GNP+   AG   L+++++   
Sbjct: 263 TTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT 322
Query: 377 QNNAHVVGSYLKERLTALKDKYG 399
                 +   L + L A+  + G
Sbjct: 323 YEYLDQITKRLSDGLLAIAQETG 345

>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 31/323 (9%)
Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFA 147
           K  Y +D +G RY+D  G      CGH HP V++++ V   K         L + +A   
Sbjct: 42  KDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA--- 98
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGT 201
           E +   +P ++++V F NSGTEA    + + R YTG + II     YHG+A      AG+
Sbjct: 99  EMVNDAVP-SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGS 157
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
             AT        V +    + L   PY  +      ++A++          G +AG + E
Sbjct: 158 GVATLGLPSSPGVPKKTTANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILE 206
Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDI 319
            I G  G I    G+L  + +   +   L + DEV  GF  A  G      E  GV PD+
Sbjct: 207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQ----EKFGVTPDL 262
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKL 376
            T+ K IG G+P+GA     EI +++          T  GNP+   AG   L+++++   
Sbjct: 263 TTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT 322
Query: 377 QNNAHVVGSYLKERLTALKDKYG 399
                 +   L + L A+  + G
Sbjct: 323 YEYLDQITKRLSDGLLAIAQETG 345

>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 31/323 (9%)
Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFA 147
           K  Y +D +G RY+D  G      CGH HP V++++ V   K         L + +A   
Sbjct: 42  KDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA--- 98
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGT 201
           E +   +P ++++V F NSGTEA    + + R YTG + II     YHG+A      AG+
Sbjct: 99  EMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGS 157
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
             AT        V +    + L   PY  +      ++A++          G +AG + E
Sbjct: 158 GVATLGLPSSPGVPKKTTANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILE 206
Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDI 319
            I G  G I    G+L  + +   +   L + DEV  GF  A  G      E  GV PD+
Sbjct: 207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQ----EKFGVTPDL 262
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKL 376
            T+ K IG G+P+GA     EI +++          T  GNP+   AG   L+++++   
Sbjct: 263 TTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT 322
Query: 377 QNNAHVVGSYLKERLTALKDKYG 399
                 +   L + L A+  + G
Sbjct: 323 YEYLDQITKRLSDGLLAIAQETG 345

>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 148/347 (42%), Gaps = 28/347 (8%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTVLYLN 140
           P+ +  GK   +FD +G  Y+D       +  GH +    D +V  +K++ ++ T     
Sbjct: 44  PIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTN----DRVVESLKKVAEYGTSFGAP 99
Query: 141 HAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
             +  + A+ +  ++P ++++V   +SGTEA   A+ +AR YTG N I+     YHG+  
Sbjct: 100 TEVENELAKLVIDRVP-SVEIVRMVSSGTEATMSALRLARGYTGRNKILKFEGCYHGHGD 158
Query: 200 GTMGATAQSNWKFNV-----VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
             +           +     V  G+       PY      D E      Q    FG    
Sbjct: 159 SLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPYN-----DLESVKLAFQQ---FGED-- 208
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
           +AG + E + G  G++    G+L  +    ++ G L I DEV  GF    +   G+   G
Sbjct: 209 IAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGFRVDYNCAQGY--FG 266
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVI 371
           V PD+  + K IG G+P+GA     EI E +          T  GNP+   AG   LK +
Sbjct: 267 VTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETLKQL 326
Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
             D  +N     G  L+E ++   + +GI       G ++G  F  +
Sbjct: 327 TPDSYKNFIK-KGDRLEEGISKAAEAHGIPHTFNRAGSMIGFFFTNE 372

>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 139/341 (40%), Gaps = 33/341 (9%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G+   L+D +G RY D          GH  P + D+++  ++      +    H
Sbjct: 70  PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQ----GGINLTGH 125
Query: 142 AIAD--FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
            + +   A  +  + P  ++ + FTNSGTEAN +A+  A  +TG   I+     YHG   
Sbjct: 126 NLLEGRLARLICERFP-QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVL 184
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL 259
           G     + +   F+ +           PY     A  ++     +          +A  L
Sbjct: 185 GFGARPSPTTVPFDFLVL---------PYNDAQTARAQIERHGPE----------IAVVL 225
Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
            E +QG  G I   P +L A+ +S  + G L + DEV    +R   H    +  G+  D+
Sbjct: 226 VEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAPHGLANKL-GIRSDL 282
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKDK 375
            T+ K IG G+  GA     ++  +   R     +  TF  N +  AAG+A L  +   +
Sbjct: 283 TTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPE 342
Query: 376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
                   G  L+ RL AL    G+     G G L+   FV
Sbjct: 343 AAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFV 383

>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 33/298 (11%)
Query: 89  KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAE 148
           K  +++D +G +Y+D  G       GH HP V+D++   +++        L   I   AE
Sbjct: 26  KGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDALHAALEKGTSFGAPCLLENI--LAE 83
Query: 149 ALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGTM 202
            + + +P ++++V F NSGTEA    + + R YT    +I     YHG+A      AG+ 
Sbjct: 84  MVIAAVP-SVEMVRFVNSGTEACMAVLRLMRAYTQREKVIKFEGCYHGHADMFLVKAGSG 142
Query: 203 GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG--EMYAKDVQDLIDFGTSGHVAGFLS 260
            AT        V +      L   PY  +       E Y  D            +AG + 
Sbjct: 143 VATLGLPDSPGVPKATTAATLT-APYNDLEAVSRLFEQYPND------------IAGVIL 189
Query: 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPD 318
           E + G  G I    G+L  + +  K+ G L + DEV  GF  A  G+     E  GV PD
Sbjct: 190 EPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGFRIAYGGAQ----EKFGVTPD 245
Query: 319 IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN---YFNTFGGNPVCTAAGHAVLKVIQK 373
           + T+ K IG G+P+GA     EI +++          T  GNP+   AG   L+++ +
Sbjct: 246 LTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEILSR 303

>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 132/336 (39%), Gaps = 58/336 (17%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +      YLFD +G+ Y+D  G       GH HP +  +++  ++R        L+ 
Sbjct: 36  PLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAIRQAVIEAVER-------GLSF 88
Query: 142 AIADFAEALASKMPGNL----KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 197
                 E   +++  +L      V   NSGTEA   AI +AR YTG + II     YHG+
Sbjct: 89  GAPTEXEVKXAQLVTDLVPTXDXVRXVNSGTEATXSAIRLARGYTGRDKIIKFEGCYHGH 148
Query: 198 A------AGTMGATAQSNWKFNVVQTGVHHALNPD-----PYRGVFGADGEMYAKDVQDL 246
           A      AG+   T        V      H L          R  F    E Y ++    
Sbjct: 149 ADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAF----EQYPQE---- 200
Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTG 304
                   VA  + E + G    I   P +LP +     + G L I DEV  GF  A  G
Sbjct: 201 --------VACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGFRVALAG 252
Query: 305 SHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN---YFNTFGGNPVCT 361
           +  +    + V+PD+  + K IG G P+GA     E+   L          T  GNP+  
Sbjct: 253 AQDY----YHVIPDLTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAX 308
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK 397
           AAG A L  I +         VG Y  E LT L D 
Sbjct: 309 AAGFACLTEISQ---------VGVY--ETLTELTDS 333

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 180/431 (41%), Gaps = 58/431 (13%)
Query: 83  LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           L++      YL D   GRRYLD F  +A+   G   P +VD      + +Q +     N 
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
                A+A F E  A ++ G+  L  +FF   G  A E A+  A  +   ++        
Sbjct: 97  DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
               ++ LR A+HG +  T+  T           KF+  +    + + P   +P      
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
           A+    A+       F T  H +A F++E IQG GG     P +  A+ +   +   L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAE----VLTR 347
            DEVQ G   TG+  W ++   V PDIV   K     G+  G  V   E+A+    V +R
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVPSR 326
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRG 406
            N  +T+GGN         +L+VI+ + L   A   G YL+ RL  L   +  ++ D RG
Sbjct: 327 LN--STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDA 466
           RG +             P  A+   ++ ++ +  V+V   G   +  R  PPL  +  + 
Sbjct: 385 RGLMCAFSL--------PTTADRDELIRQLWQRAVIVLPAG--ADTVRFRPPLTVSTAEI 434
Query: 467 DYLVDVMDYSL 477
           D  +  +  +L
Sbjct: 435 DAAIAAVRSAL 445

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 180/431 (41%), Gaps = 58/431 (13%)
Query: 83  LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           L++      YL D   GRRYLD F  +A+   G   P +VD      + +Q +     N 
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
                A+A F E  A ++ G+  L  +FF   G  A E A+  A  +   ++        
Sbjct: 97  DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
               ++ LR A+HG +  T+  T           KF+  +    + + P   +P      
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
           A+    A+       F T  H +A F++E IQG GG     P +  A+ +   +   L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAE----VLTR 347
            DEVQ G   TG+  W ++   V PDIV   K     G+  G  V   E+A+    V +R
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVPSR 326
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRG 406
            N  +T+GGN         +L+VI+ + L   A   G YL+ RL  L   +  ++ D RG
Sbjct: 327 LN--STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDA 466
           RG +             P  A+   ++ ++ +  V+V   G   +  R  PPL  +  + 
Sbjct: 385 RGLMCAFSL--------PTTADRDELIRQLWQRAVIVLPAG--ADTVRFRPPLTVSTAEI 434
Query: 467 DYLVDVMDYSL 477
           D  +  +  +L
Sbjct: 435 DAAIAAVRSAL 445

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 180/431 (41%), Gaps = 58/431 (13%)
Query: 83  LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           L++      YL D   GRRYLD F  +A+   G   P +VD      + +Q +     N 
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
                A+A F E  A ++ G+  L  +FF   G  A E A+  A  +   ++        
Sbjct: 97  DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
               ++ LR A+HG +  T+  T           KF+  +    + + P   +P      
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
           A+    A+       F T  H +A F++E IQG GG     P +  A+ +   +   L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAE----VLTR 347
            DEVQ G   TG+  W ++   V PDIV   K     G+  G  V   E+A+    V +R
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVPSR 326
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRG 406
            N  +++GGN         +L+VI+ + L   A   G YL+ RL  L   +  ++ D RG
Sbjct: 327 LN--SSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDA 466
           RG +             P  A+   ++ ++ +  V+V   G   +  R  PPL  +  + 
Sbjct: 385 RGLMCAFSL--------PTTADRDELIRQLWQRAVIVLPAG--ADTVRFRPPLTVSTAEI 434
Query: 467 DYLVDVMDYSL 477
           D  +  +  +L
Sbjct: 435 DAAIAAVRSAL 445

>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 130/324 (40%), Gaps = 35/324 (10%)
Query: 75  LFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS 134
           LFH    PL +  G      D +G  Y++  G       GH HP +  ++   +    + 
Sbjct: 77  LFH-RPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNL 135
Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
           +    N A+  FAEA+  + P ++ +V FTNSGTEAN +A+  A   TG   +++    Y
Sbjct: 136 STQTENEAL--FAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGY 192
Query: 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID-FGTSG 253
           HG         A +N  ++VV              GV+         DV+   D     G
Sbjct: 193 HGGLLNFASGHAPTNAPYHVVL-------------GVY--------NDVEGTADLLKRHG 231
Query: 254 H-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
           H  A  L E + G GG +     +L  +     + G L I DEV       G      E 
Sbjct: 232 HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGG---AQEM 288
Query: 313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL--TRRNYF---NTFGGNPVCTAAGHAV 367
            G+  D+ T+ K IG G+  GA     ++ E     R   F    TF  N +  +AGHA 
Sbjct: 289 LGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA 348
Query: 368 LKVIQKDKLQNNAHVVGSYLKERL 391
           L  I   +  ++    G   +  L
Sbjct: 349 LTQIYTRQAASDLSASGDRFRANL 372

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 176/433 (40%), Gaps = 62/433 (14%)
Query: 83  LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           L++      YL D   GRRYLD F  +A+   G   P +VD      + +Q +     N 
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
                A+A F E  A ++ G+  L  +FF   G  A E A+  A  +   ++        
Sbjct: 97  DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
               ++ LR A+HG +  T+  T           KF+  +    + + P   +P      
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
           A+    A+       F T  H +A F++E IQG GG     P +  A+ +   +   L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF- 351
            DEVQ G   TG+  W ++   V PDIV      G    +  V+    + EV    N F 
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIV----AFGKKTQVCGVMAGRRVDEVAD--NVFA 322
Query: 352 ------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDV 404
                 +T+GGN         +L+VI+ + L   A   G YL+ RL  L   +  ++ D 
Sbjct: 323 VPSRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDP 382
Query: 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE 464
           RGRG +             P  A+   ++ ++ +  V+V   G   +  R  PPL  +  
Sbjct: 383 RGRGLMCAFSL--------PTTADRDELIRQLWQRAVIVLPAG--ADTVRFRPPLTVSTA 432
Query: 465 DADYLVDVMDYSL 477
           + D  +  +  +L
Sbjct: 433 EIDAAIAAVRSAL 445

>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 148/356 (41%), Gaps = 45/356 (12%)
Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTVLYLN 140
           PL    GK   ++D +G  Y+D       +  GH +    D +V  +K + +  T     
Sbjct: 36  PLFXERGKGSKVYDIDGNEYIDYVLSWGPLIHGHAN----DRVVEALKAVAERGTSFGAP 91
Query: 141 HAIAD-FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG--- 196
             I +  A+ +  ++P ++++V   NSGTEA   A+ +AR YTG N I+     YHG   
Sbjct: 92  TEIENKLAKLVIERVP-SIEIVRXVNSGTEATXSALRLARGYTGRNKILKFIGCYHGHGD 150
Query: 197 -------NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
                  +   T+G          V +  +  A N          D E      +   D 
Sbjct: 151 SLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN----------DLESVKYAFEQFGD- 199
Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
                +A  + E + G  G++   PG+L  + +  ++ G L I DEV  GF    +   G
Sbjct: 200 ----DIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGFRVAYNCGQG 255
Query: 310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHA 366
           +  +GV PD+  + K IG G+P+GA     EI   +          T  GNP+  AAG+ 
Sbjct: 256 Y--YGVTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYE 313
Query: 367 VLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
            L  +  +   + +  A      L+  L    +K+GI   +   G  +G+ F TD 
Sbjct: 314 TLVQLTPESYVEFERKAEX----LEAGLRKAAEKHGIPHHINRAGSXIGI-FFTDE 364

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/473 (22%), Positives = 181/473 (38%), Gaps = 68/473 (14%)
Query: 48  FDYSPP----PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLD 103
           FDY  P       GP + E++ +     +    H +    N  + +  YL D +G R LD
Sbjct: 11  FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFC---NYEESRGNYLVDVDGNRMLD 67
Query: 104 AFGGIATVCCGHCHPYVVDSIVNQIKRIQHST------VLYLNHAIADFAEALASKMPGN 157
            +  I+++  G+ HP +V  +V Q + +          +L   + +    E+L S  P  
Sbjct: 68  LYSQISSIPIGYSHPALV-KLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG 126
Query: 158 LKVVFFTNSGTEANE------------------------LAIMMARLYTGCND--IISLR 191
           +  +     G+ +NE                        L   M     GC D  I+S  
Sbjct: 127 MSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFM 186
Query: 192 NAYHGNAAGTMGAT-AQSNWKFNVVQTGVHHALNPD---PYRGVFGADGEMYAKDVQDLI 247
            A+HG   G +  T +++  K ++       A  P    P       + +  A+ ++++ 
Sbjct: 187 GAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVE 246
Query: 248 DF-----GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
           D           VAG + E IQ  GG    +  +   +    +K G   + DEVQ G   
Sbjct: 247 DLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGS 306
Query: 303 TGSHFWGFEAHGV--VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
           TG  FW  E  G+    D++T +K +  G         P     +     FNT+ G+P  
Sbjct: 307 TGK-FWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI-----FNTWLGDPSK 360
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTDR 419
                 V+ +I+++ L +NA   G  L   L  L+ +Y   I  VRGRG     +     
Sbjct: 361 NLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFD----- 415
Query: 420 QLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV 472
              TP ++    ++   +  GV++G  G      R  P L F    A   +++
Sbjct: 416 ---TPDESIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNI 463

>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 126/289 (43%), Gaps = 29/289 (10%)
Query: 102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKV 160
           LDA     T   GH HP +  ++  Q++ + H     L H   A  A+ L    P  L  
Sbjct: 78  LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 137
Query: 161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGAT-----AQSN 209
           VFF++SG+ + E+A  MA  Y       G   +++ R  YHG+    M          S 
Sbjct: 138 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 197
Query: 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGG 268
           W  +V+   V     P  Y   + A  E  A+  Q       +G +A  + E + QG GG
Sbjct: 198 WT-DVLAAQVFAPQVPRDYDPAYSAAFE--AQLAQH------AGELAAVVVEPVVQGAGG 248
Query: 269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN 328
           +    P YL  +    ++   L I DE+  GF RTG+ F    A GV PDI+ + K +  
Sbjct: 249 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA-GVSPDIMCVGKALTG 307
Query: 329 G-IPLGAVVTTPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVI 371
           G + L A + T ++A  ++        +  TF  NP+  A   A ++++
Sbjct: 308 GYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELL 356

>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 125/289 (43%), Gaps = 29/289 (10%)
Query: 102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKV 160
           LDA     T   GH HP +  ++  Q++ + H     L H   A  A+ L    P  L  
Sbjct: 83  LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 142
Query: 161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGAT-----AQSN 209
           VFF++SG+ + E+A  MA  Y       G   +++ R  YHG+    M          S 
Sbjct: 143 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 202
Query: 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGG 268
           W  +V+   V     P  Y   + A  E  A+  Q       +G +A  + E + QG GG
Sbjct: 203 WT-DVLAAQVFAPQVPRDYDPAYSAAFE--AQLAQH------AGELAAVVVEPVVQGAGG 253
Query: 269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN 328
           +    P YL  +    ++   L I DE+  GF RTG+ F    A GV PDI+ + K +  
Sbjct: 254 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA-GVSPDIMCVGKALTG 312
Query: 329 G-IPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCTAAGHAVLKVI 371
           G + L A + T ++A  ++           TF  NP+  A   A ++++
Sbjct: 313 GYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELL 361

>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 125/289 (43%), Gaps = 29/289 (10%)
Query: 102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKV 160
           LDA     T   GH HP +  ++  Q++ + H     L H   A  A+ L    P  L  
Sbjct: 58  LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 117
Query: 161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGAT-----AQSN 209
           VFF++SG+ + E+A  MA  Y       G   +++ R  YHG+    M          S 
Sbjct: 118 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 177
Query: 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGG 268
           W  +V+   V     P  Y   + A  E  A+  Q       +G +A  + E + QG GG
Sbjct: 178 WT-DVLAAQVFAPQVPRDYDPAYSAAFE--AQLAQH------AGELAAVVVEPVVQGAGG 228
Query: 269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN 328
           +    P YL  +    ++   L I DE+  GF RTG+ F    A GV PDI+ + K +  
Sbjct: 229 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA-GVSPDIMCVGKALTG 287
Query: 329 G-IPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCTAAGHAVLKVI 371
           G + L A + T ++A  ++           TF  NP+  A   A ++++
Sbjct: 288 GYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELL 336

>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 152/331 (45%), Gaps = 34/331 (10%)
Query: 83  LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA 142
           L + D +  +  D +G  YLD FGG   +  GH HP V  +I    + + H      +H 
Sbjct: 41  LFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIA---EALSHGVQYAASHP 97
Query: 143 I-ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201
           +   +AE + +  P +++ + FT SGTE   LA+ +AR +TG   I+     YHG     
Sbjct: 98  LEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHG----- 151
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGE----MYAKDVQDLID-FGTSGH-V 255
                   W  +   +G +   +  P  GV          +   D++ + + F   G  +
Sbjct: 152 --------WH-DFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDI 202
Query: 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA-HG 314
           A F++E +    G+  ++  +L    +  ++ G L I DEV +GF R G+H  G +A   
Sbjct: 203 AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH--GMQALLD 259
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLK 369
           V PD+  +AK    G+P G +    ++  VL+R +     +  TF GNP+  AA  A + 
Sbjct: 260 VQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAID 319
Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGI 400
            I +D +    + +G + +E +  L  + G+
Sbjct: 320 TILEDDVCAKINDLGQFAREAMNHLFARKGL 350

>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 98/264 (37%), Gaps = 70/264 (26%)
Query: 161 VFFTNSGTEANELAIMMARLYTGCND----------------IISLRNAYHGNAAGTMGA 204
           V+F+++G+ A E+A+ MA     C D                +I+LR +YHG+  G M A
Sbjct: 445 VYFSDNGSTAIEIALKMA-FRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEA 503
Query: 205 TAQSNWKFNVVQ---TGVHHALNPD---------------------PYRGVFGADGEMY- 239
            A S +   + Q   TG    L+P                      P  G F +  E++ 
Sbjct: 504 QAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFD 563
Query: 240 ----------------AKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYK 282
                           +K +Q+      S HV   + E  I G GG+  + P +   +  
Sbjct: 564 KSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVN 623
Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEI 341
             +      I DEV  GF R G      E  G  PDI   AK +  G +PL   + T  +
Sbjct: 624 ECRNRKIPVIFDEVFTGFWRLGVET-TTELLGCKPDIACFAKLLTGGMVPLAVTLATDAV 682
Query: 342 AEVLTRRNYFNTFGGNPVCTAAGH 365
                    F++F G+    A  H
Sbjct: 683 ---------FDSFSGDSKLKALLH 697

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	480
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	0.0
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	0.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	1e-152
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	1e-149
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	1e-144
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-119
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	1e-114
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	1e-113
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	1e-111
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	1e-111
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	1e-110
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	1e-109
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	1e-108
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	1e-108
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	1e-107
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	1e-106
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	1e-105
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	1e-103
3hmu_A	472	Aminotransferase, class III; structural genomics,	1e-103
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	1e-103
1z7d_A	433	Ornithine aminotransferase; structural genomics co	1e-102
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	1e-102
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	3e-99
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	8e-99
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	2e-88
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	2e-73
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	7e-68
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	5e-58
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	5e-36
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	2e-34
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	8e-29
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	1e-28
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	3e-28
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	2e-27
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	6e-27
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	7e-26
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	6e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-04

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score =  551 bits (1422), Expect = 0.0
 Identities = 139/427 (32%), Positives = 208/427 (48%), Gaps = 12/427 (2%)

Query: 62  EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVV 121
                 +  L          P+ +   K  +++D +GR  LD   G  +   GHCHP +V
Sbjct: 8   TFWRNARHHLVRYGGTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIV 65

Query: 122 DSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY 181
             I     ++ H     L+  + D A  LA+  P  L      ++G E+NE AI MA+L 
Sbjct: 66  SVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV 125

Query: 182 TGCNDIISLRNAYHGNAAGTMGATAQSNWK-FNVVQTGVHHALNPDPYRGVFGADGE--- 237
           TG  +I+    ++HG       AT  +  K       G      P  YR  F  +G    
Sbjct: 126 TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDY 185

Query: 238 -MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296
                   DLID  +SG++A F++E I   GGIIEL  GY+ A+ +  +  G L I DE 
Sbjct: 186 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEA 245

Query: 297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTF 354
           Q G  RTG   +  +  GV PDI+T++K +G G+PL A+VT+  I E      Y  + T 
Sbjct: 246 QTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTH 304

Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
             +P+  A G  VL V+Q+D L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE
Sbjct: 305 VSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVE 364

Query: 415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVG--KGGFYGNVFRITPPLCFTKEDADYLVDV 472
            V DR+ K PA      I  +   +G+ +   +    G VFRI PPL  ++++ D  + +
Sbjct: 365 IVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSL 424

Query: 473 MDYSLSK 479
           +  ++ +
Sbjct: 425 LGQAIER 431

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score =  541 bits (1396), Expect = 0.0
 Identities = 133/428 (31%), Positives = 207/428 (48%), Gaps = 7/428 (1%)

Query: 57  GPS-ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
           G      +  +    +       +  PL +  G+   L +ENGR  +D  G       G+
Sbjct: 1   GSHMTKALYDRDGAAIGNLQKLRFF-PLAISGGRGARLIEENGRELIDLSGAWGAASLGY 59

Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALASKMPGN-LKVVFFTNSGTEANEL 173
            HP +V ++         +T+L  ++A     AE L +  PG     ++F +SG++ANE 
Sbjct: 60  GHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEA 119

Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG 233
           A       TG + +I+   AYHG   G+M  +  S         G+     PDPYR    
Sbjct: 120 AYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRN 179

Query: 234 -ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
              G+     + + +    +G +     E IQ  GG+I    G+L       +  G L +
Sbjct: 180 DPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVV 239

Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN 352
            DEV+ G AR+G     FE  G VPDI+ + KG+G G+PL AV+   EI +  +      
Sbjct: 240 CDEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASA-FAMQ 297

Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
           T  GNP+  AAG AVL+ I +D L   A   G  L++ L+ L  ++ +IGD+RGRG   G
Sbjct: 298 TLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACG 357

Query: 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV 472
           +E V DRQ + PA+AET  ++ +  ++G++V   G  GNV   TPPL  T+ D    +D+
Sbjct: 358 MELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDL 417

Query: 473 MDYSLSKM 480
           +D + S++
Sbjct: 418 LDRAFSEL 425

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score =  439 bits (1132), Expect = e-152
 Identities = 149/451 (33%), Positives = 215/451 (47%), Gaps = 13/451 (2%)

Query: 33  SSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQY 92
            S+++    L +        P   GP +  +  +R+  +S  +      P+  VD     
Sbjct: 3   GSMTDITYRLAQKRTIVTPLP---GPRSGALAERRRAAVSAGVGSTA--PVYAVDADGGV 57

Query: 93  LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALA 151
           + D +G  ++D   GIA    G  HP V  +I +Q     H+  +   +      AE L 
Sbjct: 58  IVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLN 117

Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW 210
           +  PG+  K     NSG EA E AI +ARL TG   +++  NAYHG    TM  TA+S  
Sbjct: 118 ALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMP 177

Query: 211 ---KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID-FGTSGHVAGFLSESIQGV 266
              +F      V+      P R   G  GE  A+     I+    +  +A  + E IQG 
Sbjct: 178 YKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGE 237

Query: 267 GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI 326
           GG I  APG+L  +     + G + IADEVQ GFARTG  ++  E  G+VPDIVTMAKGI
Sbjct: 238 GGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGI 296

Query: 327 GNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY 386
             G+PL AV    E+ + +       T+GGNPV  AA  A L V+++  L   A  + + 
Sbjct: 297 AGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEAS 356

Query: 387 LKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG 446
           +  RL+AL ++  IIG+VRGRG +L +E V       P  A T  I  +    GVL+   
Sbjct: 357 VTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGT-LEPDAALTKSIAAEALSQGVLILTC 415

Query: 447 GFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
           G +GNV R+ PPL    +  D  +  +   +
Sbjct: 416 GTFGNVIRLLPPLVIGDDLLDEGITALSDII 446

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score =  432 bits (1112), Expect = e-149
 Identities = 134/453 (29%), Positives = 205/453 (45%), Gaps = 18/453 (3%)

Query: 36  SEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFD 95
               +   +      + P   GP +  ++ ++ T ++  +      P+  V      + D
Sbjct: 3   GSMVSHPEQSRHLATAIP---GPRSQALIDRKGTAVARGVGTTM--PVYAVRAGGGIVED 57

Query: 96  ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM 154
            +G R +D   GIA    G+  P VV+++ +Q+    H+  +   +       E L    
Sbjct: 58  VDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLT 117

Query: 155 PGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW--- 210
           P    K     NSG+EA E A+ +AR +T    +++  +AYHG    TM  TA+      
Sbjct: 118 PVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKD 177

Query: 211 KFNVVQTGVHHALNPDPYRGVFG-----ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQ 264
            F      ++ A    P+R          DGE+ AK    +ID       +A  + E IQ
Sbjct: 178 GFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQ 237

Query: 265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAK 324
           G GG I  A G+LP +    +K   + IADEVQ GFARTG   +  E  G+ PD++  AK
Sbjct: 238 GEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAK 296

Query: 325 GIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVG 384
           GI  G+PL AV    EI +         T+GGNP+  AA  A ++ I+ + L   A  + 
Sbjct: 297 GIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIE 356

Query: 385 SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG 444
             +K+RL  L+ +   IGDVRGRG ++ +E V       P    T  +       GV+V 
Sbjct: 357 KIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGT-TEPDADLTKALCAGAHAAGVIVL 415

Query: 445 KGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
             G YGNV R  PPL    +  +  +DV++  L
Sbjct: 416 SCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score =  417 bits (1075), Expect = e-144
 Identities = 122/426 (28%), Positives = 200/426 (46%), Gaps = 10/426 (2%)

Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
           S  E++ +R   +   +  ++  P+     +   ++D  GR YLD  GGIA +  GH HP
Sbjct: 3   SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 60

Query: 119 YVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNL-KVVFFTNSGTEANELAIM 176
            VV ++  Q+K++ H+    L +    +  E +  K+PG+  K      +G+EA E A+ 
Sbjct: 61  KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120

Query: 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW---KFNVVQTGVHHALNPDPYRGVFG 233
           +AR  T  +  I+   AYHG    T+  T + N       ++   V+ AL P P  G+  
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            D       +    +      +A  + E +QG GG    +P ++  +     + G + IA
Sbjct: 181 DDAIASIHRI--FKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA 238

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNT 353
           DEVQ+G  RTG   +  E  GV PD+ T AK I  G PL  V    E+ + +       T
Sbjct: 239 DEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGT 297

Query: 354 FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV 413
           + GNP+   A   VLKV +++ L   A+ +G  LK+ L A+ +K+  IGDVRG G ++ +
Sbjct: 298 YAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 357

Query: 414 EFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
           E   D     P    T  I+ + ++ G+++   G Y NV RI  PL          ++++
Sbjct: 358 ELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 417

Query: 474 DYSLSK 479
                +
Sbjct: 418 SQCFDE 423

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score =  354 bits (912), Expect = e-119
 Identities = 126/423 (29%), Positives = 208/423 (49%), Gaps = 26/423 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
                  +  ++ D  G+RYLD   G+  V  G+    + ++   Q++ + +  +   + 
Sbjct: 32  TTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHE 91

Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND------IISLRNAYH 195
                AE L   + G   + FF+NSG+EANE A  +AR Y            +S    YH
Sbjct: 92  PAIKLAEKLNEWLGGEYVI-FFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYH 150

Query: 196 GNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLIDF 249
           GN   TM AT Q+  +  +    +G  H   PD YR        +Y     K+V  ++ +
Sbjct: 151 GNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTW 210

Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
             S  +A F+ E I   GGI+     Y+ AV+++ +K G L I+DEV  GF RTG   +G
Sbjct: 211 ELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTG-KAFG 269

Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL---TRRNYFN---TFGGNPVCTA 362
           F  + V PDI+TMAKGI +  +PL A     EI E         +F    TFGGNP   A
Sbjct: 270 FMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACA 329

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
                L++I+ + L   +  +GS L E+L     ++ ++GD+RG+G L+G+E V D++ K
Sbjct: 330 LALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK 389

Query: 423 TP-AKAETLYIMDKMKEMGVLVGKGG----FYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
            P    +   +++  KE G+++G+ G     Y N+  + PPL  + E+  +++  +  ++
Sbjct: 390 EPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAM 449

Query: 478 SKM 480
            ++
Sbjct: 450 ERI 452

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score =  342 bits (879), Expect = e-114
 Identities = 125/407 (30%), Positives = 196/407 (48%), Gaps = 34/407 (8%)

Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
              +Y+K  L +V G+   ++D  G  Y+D  GG      GH +P VV+++  Q + +  
Sbjct: 20  DSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA 79

Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA 193
                      +F   L + +P  L  VF  NSGTEANE A+  AR +TG    ++    
Sbjct: 80  MPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRG 139

Query: 194 YHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251
           + G   G++  T +  ++  F  +   V       PY        ++ A  ++  +D   
Sbjct: 140 FSGRTMGSLSVTWEPKYREPFLPLVEPVEFI----PY-------NDVEA--LKRAVD--- 183

Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
               A  + E +QG GG+    P +L A  +  ++ G L I DE+Q G  RTG   + FE
Sbjct: 184 -EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-KRFAFE 241

Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371
             G+VPDI+T+AK +G G+PLG  V   E+A  + +  +  TFGGNP+  AAG A ++ +
Sbjct: 242 HFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL 301

Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLY 431
           ++ +L   A  +G +  E+L A+      I +VRG G ++G+E      LK  A     Y
Sbjct: 302 ERTRLWERAAELGPWFMEKLRAIPSPK--IREVRGMGLMVGLE------LKEKAAP---Y 350

Query: 432 IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
           I    KE  VL  + G    V R  PPL   KED + +V+ +   L+
Sbjct: 351 IARLEKEHRVLALQAG--PTVIRFLPPLVIEKEDLERVVEAVRAVLA 395

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score =  339 bits (873), Expect = e-113
 Identities = 124/438 (28%), Positives = 202/438 (46%), Gaps = 39/438 (8%)

Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCH 117
            + +I+ +   +L+ S       PL +  G+  +++D +G +YLD   GI     G   H
Sbjct: 2   LSRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSH 61

Query: 118 PYVVDSIVNQIKRIQH-STVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAI 175
           P V+   + Q++++ H +   + N    + A+ L +  PGN  K VFF+NSGTEA E +I
Sbjct: 62  PEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASI 121

Query: 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK---FNVVQTGVHHALNPDPYRGVF 232
            + +  TG   II+    +HG   G++  TA    +         GV H   P+PYR  +
Sbjct: 122 KVVK-NTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPW 180

Query: 233 GADGEMYAKD-VQDLIDF---------GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282
             +G     + V  +I+F              VAG   E IQG GG +     +   + K
Sbjct: 181 HINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK 240

Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEI 341
             KK G L + DEVQ G  RTG   +  E    VPD++T+AK +G GI P+GA +   ++
Sbjct: 241 LAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDL 299

Query: 342 AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII 401
                   + NTFGGN +  A G  V+ +++   L  + + +G    E L  L       
Sbjct: 300 D--FKPGMHSNTFGGNALACAIGSKVIDIVK--DLLPHVNEIGKIFAEELQGL------A 349

Query: 402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCF 461
            DVRG G   G+E+   +            I+ +  + G+L+   G   +  R+ PPL  
Sbjct: 350 DDVRGIGLAWGLEYNEKKVRDR--------IIGESFKRGLLLLPAG--RSAIRVIPPLVI 399

Query: 462 TKEDADYLVDVMDYSLSK 479
           ++E+A   +D++   +  
Sbjct: 400 SEEEAKQGLDILKKVIKV 417

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score =  335 bits (861), Expect = e-111
 Identities = 121/431 (28%), Positives = 194/431 (45%), Gaps = 38/431 (8%)

Query: 59  SADEILAKRKTFLSPSLFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           + ++    R TF    +  +Y+      V GK   ++D+ G+ Y+D  GGIA    GHCH
Sbjct: 17  ATEQTAITRATF-DEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCH 75

Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P +V+++ +Q + + H++ ++ N         L          V F NSGTEANE A  +
Sbjct: 76  PALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAE--RVLFMNSGTEANETAFKL 133

Query: 178 ARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYR 229
           AR Y           II+  NA+HG +  T+    Q  +   F      + H     P+ 
Sbjct: 134 ARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHV----PF- 188

Query: 230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG 289
                  +++A  V+ ++D     H    + E IQG GG+    P +L  +     +   
Sbjct: 189 ------NDLHA--VKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQA 236

Query: 290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN 349
           L + DEVQ G  RTG   + +  +GV PDI+T AK +G G P+ A++TT EIA      +
Sbjct: 237 LLVFDEVQCGMGRTG-DLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGS 295

Query: 350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF 409
           + +T+GGNP+  A   A   +I   ++    H       + L A+ +++ I  D+RG G 
Sbjct: 296 HGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGL 355

Query: 410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYL 469
           L+G E      LK   K      +    E GV+V   G   +V R  P L   + D    
Sbjct: 356 LIGAE------LKPKYKGRARDFLYAGAEAGVMVLNAG--ADVMRFAPSLVVEEADIHEG 407

Query: 470 VDVMDYSLSKM 480
           +     ++ K+
Sbjct: 408 MQRFAQAVGKV 418

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score =  334 bits (859), Expect = e-111
 Identities = 119/424 (28%), Positives = 194/424 (45%), Gaps = 28/424 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI--QHSTVLYL 139
              +  G+   ++D NGR+ +DAF G+  V  G+    + D+I  Q K +   H+ V + 
Sbjct: 34  TRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHG 93

Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNA 193
             A    A+ +  + P  +  V+F  SG++ANE  I +   Y    G  +   IIS    
Sbjct: 94  TEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRG 153

Query: 194 YHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYR-GVFGADGEMY----AKDVQDL 246
           YHG+   T   T    +   F++ +  V H   P  +R        E +    A  ++++
Sbjct: 154 YHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEM 213

Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306
           I       +A F+ E I G GGI+    GY   +   +KK   L +ADEV  GF R G  
Sbjct: 214 ILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-T 272

Query: 307 FWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYFN---TFGGNP 358
            +G + +G+ PD++T+AKG+ +   PL  V+    + +VL     +        T+  +P
Sbjct: 273 MFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHP 332

Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           +C AAG A L++I +  L  NA   G+Y +  L      +  +G+VRG G L  VEFV D
Sbjct: 333 ICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVAD 392

Query: 419 RQLKTPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY 475
           +  +    A       +   +   GV+  +    G++    PPLC T+E AD +V     
Sbjct: 393 KDDRVFFDASQKIGPQVATALAASGVIG-RAMPQGDILGFAPPLCLTREQADIVVSKTAD 451

Query: 476 SLSK 479
           ++  
Sbjct: 452 AVKS 455

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score =  334 bits (858), Expect = e-110
 Identities = 119/428 (27%), Positives = 189/428 (44%), Gaps = 30/428 (7%)

Query: 77  HLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHST 135
                 + V  G+  Y+ D NGRRYLDA  G+  +  G  H  ++D+   Q +R   +  
Sbjct: 39  LHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHA 98

Query: 136 VLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---II 188
                       +E L    P +   VF+TNSG+EAN+  + M        G      I+
Sbjct: 99  FFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKIL 158

Query: 189 SLRNAYHGNAAGTMGATAQSNWK-FNVVQTGVHHALNPDPYR-GVFGADGEMY----AKD 242
           +  NAYHG  A +   T +     F +   G  H   P  +R G  G   E +    A++
Sbjct: 159 TRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARE 218

Query: 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
           +++ I    +  +AGF +E + G GG+I  A GY  A+   ++K     I+DEV  GF R
Sbjct: 219 LEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGR 278

Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYFN---TF 354
           TG + WG   +   PD +  +K +  G  P+GAV+  PE+++ L         F    T 
Sbjct: 279 TG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTA 337

Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
            G+PV  A     + V+  + L  N   +    +ERL  + +    IG+ RG GF+  +E
Sbjct: 338 SGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAE-RPNIGEYRGIGFMWALE 396

Query: 415 FVTDRQLKTPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD 471
            V D+  KTP          I +   ++G++       G    + PP   T+   D + D
Sbjct: 397 AVKDKASKTPFDGNLSVSERIANTCTDLGLICRP---LGQSVVLCPPFILTEAQMDEMFD 453

Query: 472 VMDYSLSK 479
            ++ +L K
Sbjct: 454 KLEKALDK 461

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score =  328 bits (843), Expect = e-109
 Identities = 130/418 (31%), Positives = 200/418 (47%), Gaps = 43/418 (10%)

Query: 73  PSLFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI 131
             L + YS  P   V GK  +++DE G  YLD   GIA    GH HP +V++I +Q +++
Sbjct: 13  MYLMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL 72

Query: 132 QHSTVLYLNHAIADFAEAL--ASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGC 184
            H + L+ N    + AE L   +        VFF N+GTEANE AI +AR Y        
Sbjct: 73  IHCSNLFWNRPQMELAELLSKNTFG----GKVFFANTGTEANEAAIKIARKYGKKKSEKK 128

Query: 185 NDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKD 242
             I+S  N++HG   G++ AT Q  ++  F  +  G  +      +  V         +D
Sbjct: 129 YRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYF----EFNNV---------ED 175

Query: 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
           ++  +       V     E IQG  GI+     +L    K   +   L + DEVQ G  R
Sbjct: 176 LRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGR 231

Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA 362
           TG   + ++ +GVVPD++T AKG+G G+P+GAV+   E A VL   ++  TFGGNP+   
Sbjct: 232 TG-KLFAYQKYGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACR 289

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
           AG  V+K + K+         G+YL ++L  +K++Y ++ DVRG G ++G++       +
Sbjct: 290 AGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQ------FR 343

Query: 423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
                    +  K  E  +LV   G   N  R  PPL     + D  V+ +   L  +
Sbjct: 344 EEVSNRE--VATKCFENKLLVVPAG--NNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  328 bits (844), Expect = e-108
 Identities = 103/461 (22%), Positives = 166/461 (36%), Gaps = 41/461 (8%)

Query: 46  PPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDE-NGRRYLDA 104
                        + D +       +      +    L++      YL D   GRRYLD 
Sbjct: 3   AVVKSVALAGRPTTPDRVHEVLGRSMLVDGLDI---VLDLTRSGGSYLVDAITGRRYLDM 59

Query: 105 FGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-----HAIADFAEALASKMPGN-L 158
           F  +A+   G   P +VD      + +Q +     N      A+A F E  A  +    L
Sbjct: 60  FTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPAL 119

Query: 159 KVVFFTNSGTEANELAIMMARLYTGCND------------IISLRNAYHGNAAGTMGATA 206
             +FF   G  A E A+  A  +   ++            ++ LR A+HG +  T+  T 
Sbjct: 120 PHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTN 179

Query: 207 QSNWK---FNVVQTGVHHA--LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
                   F         A  + P        A      +  +   +      +A F++E
Sbjct: 180 TKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFE-TRPHDIACFVAE 238

Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT 321
            IQG GG     P +  A+ +   +   L I DEVQ G   TG   W ++   V PDIV 
Sbjct: 239 PIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVA 297

Query: 322 MAKGIGN-GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA 380
             K     G+  G  V               +T+GGN         +L+VI+ + L   A
Sbjct: 298 FGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERA 357

Query: 381 HVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM 439
              G YL+ RL  L   +  ++ D RGRG +             P  A+   ++ ++ + 
Sbjct: 358 VQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL--------PTTADRDELIRQLWQR 409

Query: 440 GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
            V+V   G   +  R  PPL  +  + D  +  +  +L  +
Sbjct: 410 AVIVLPAG--ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score =  325 bits (835), Expect = e-108
 Identities = 118/417 (28%), Positives = 197/417 (47%), Gaps = 39/417 (9%)

Query: 72  SPSLFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130
              +   Y    + +  G+  YLFD+  ++YLD   GI     G+ H      I  Q+ +
Sbjct: 8   QSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDK 67

Query: 131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCN 185
           + H++ LY N  IA  A+ LA      L+ VFFTNSGTE+ E A+  AR Y         
Sbjct: 68  LLHTSNLYYNENIAAAAKNLAKA--SALERVFFTNSGTESIEGAMKTARKYAFNKGVKGG 125

Query: 186 DIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 243
             I+ ++++HG   G +  TA   ++  F  + +GV  A     Y  +           V
Sbjct: 126 QFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFA----KYNDI---------SSV 172

Query: 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART 303
           + L++          + ES+QG GGI      +  A+ K   +   L IADE+Q G  R+
Sbjct: 173 EKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRS 228

Query: 304 GSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAE-VLTRRNYFNTFGGNPVCTA 362
           G  F+ +E   ++PDI+T AK +G G+ +GA V   ++A   L   ++ +T+GGNP+  A
Sbjct: 229 G-KFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCA 287

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
             +AV ++ +++K+  N + +  YL++ L  L +++      +G GF+ G+       L 
Sbjct: 288 GVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLS------LD 341

Query: 423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
              K     ++ K +E  +L+   G   N  R  PPL   KE  D + + +  +L  
Sbjct: 342 KSVKVAK--VIQKCQENALLLISCG--ENDLRFLPPLILQKEHIDEMSEKLRKALKS 394

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  325 bits (836), Expect = e-107
 Identities = 106/484 (21%), Positives = 172/484 (35%), Gaps = 70/484 (14%)

Query: 46  PPFDYSPP------PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGR 99
             FDY  P      P  GP + E++ +     +    H      N  + +  YL D +G 
Sbjct: 9   VEFDYDGPLMKTEVP--GPRSRELMKQLNIIQNAEAVHF---FCNYEESRGNYLVDVDGN 63

Query: 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-----TVLYLNHAIADFAEALASKM 154
           R LD +  I+++  G+ HP +V  +                +L   + +    E+L S  
Sbjct: 64  RMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVA 123

Query: 155 PGNLKVVFFTNSGTEANELAIMMARLYT------------------------GCND--II 188
           P  +  +     G+ +NE A     ++                         GC D  I+
Sbjct: 124 PKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSIL 183

Query: 189 SLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNPDPYRGVFGADGEMYA-K 241
           S   A+HG   G +  T            F+           P           E    +
Sbjct: 184 SFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLE 243

Query: 242 DVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299
           +V+DLI         VAG + E IQ  GG    +  +   +    +K G   + DEVQ G
Sbjct: 244 EVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTG 303

Query: 300 FARTGSHFWGFEAHGV--VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGN 357
              TG  FW  E  G+    D++T +K +  G         P     +     FNT+ G+
Sbjct: 304 GGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI-----FNTWLGD 357

Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFV 416
           P        V+ +I+++ L +NA   G  L   L  L+ +Y   I  VRGRG     +  
Sbjct: 358 PSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDT- 416

Query: 417 TDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476
                  P ++    ++   +  GV++G  G      R  P L F    A   +++    
Sbjct: 417 -------PDESIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDI 467

Query: 477 LSKM 480
           L+  
Sbjct: 468 LADF 471

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score =  319 bits (821), Expect = e-106
 Identities = 132/408 (32%), Positives = 199/408 (48%), Gaps = 46/408 (11%)

Query: 75  LFHLYS-KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
           L + Y+  P+  V GK  YL+DE G+ YLD   GI     GH +P + +++  Q++++ H
Sbjct: 3   LMNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLH 62

Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCNDII 188
            + LY N    + A  L        K VFF NSGTE+ E AI +AR Y           I
Sbjct: 63  VSNLYENPWQEELAHKLVKHFWTEGK-VFFANSGTESVEAAIKLARKYWRDKGKNKWKFI 121

Query: 189 SLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246
           S  N++HG   G++ AT Q  +   F  +  G  +A        +           V  L
Sbjct: 122 SFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYA----KLNDI---------DSVYKL 168

Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306
           +D       AG + E IQG GG+ E +  +L  + +  K+   L I DEVQ G  RTG  
Sbjct: 169 LD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE- 223

Query: 307 FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA 366
           F+ ++   + PD++ +AKG+G G+P+GA++   E+A+  T  ++ +TFGGNP+   AG  
Sbjct: 224 FYAYQHFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTV 283

Query: 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK 426
           V+  +  +KL  +   VG+Y KE+L  L         V+GRG +LG+E      L+   K
Sbjct: 284 VVDEV--EKLLPHVREVGNYFKEKLKELGKG-----KVKGRGLMLGLE------LERECK 330

Query: 427 AETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD 474
                 + K  E G+L+      G V R  PPL   KE  D  + V+ 
Sbjct: 331 D----YVLKALEKGLLINCTA--GKVLRFLPPLIIQKEHIDRAISVLR 372

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score =  319 bits (821), Expect = e-105
 Identities = 108/420 (25%), Positives = 183/420 (43%), Gaps = 26/420 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLN 140
              +  G+  YL+D  G + +D   G+  V  G+      ++   Q++ +   +T     
Sbjct: 33  ARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTT 92

Query: 141 HAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNA 193
           H    + +  LA   P     VF+TNSG+E+ +  I M R Y    G  +   +I   N 
Sbjct: 93  HPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNG 152

Query: 194 YHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGAD----GEMYAKDVQDLI 247
           YHG+  G              ++   G+ H   P  Y+          G + A+ +++ I
Sbjct: 153 YHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKI 212

Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
               +  VA F+ E IQG GG+I     Y P + +  +K   L +ADEV  GF RTG  +
Sbjct: 213 LEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG-EW 271

Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN---TFGGNPVCTAA 363
           +G +  G  PD+ T AKG+ +G +P+GAV     +AE L     FN   T+ G+PVC A 
Sbjct: 272 FGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAV 331

Query: 364 GHAVLKVIQKDKL-QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
            HA +  ++ + + Q     +G Y+++R      ++  + DVRG G +     V ++  +
Sbjct: 332 AHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR 391

Query: 423 TPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
                         D      +++      G+     PPL  T+ + D ++ V +  L +
Sbjct: 392 ELFPDFGEIGTLCRDIFFRNNLIM---RACGDHIVSAPPLVMTRAEVDEMLAVAERCLEE 448

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score =  314 bits (808), Expect = e-103
 Identities = 114/430 (26%), Positives = 190/430 (44%), Gaps = 33/430 (7%)

Query: 74  SLFHLYSKPLNVVD-GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132
           ++F+  SKP  V   G+  +L+D+ GRRYLD   G      GH    V + +  Q  R+ 
Sbjct: 3   NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP 62

Query: 133 HSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND----- 186
                  +  +  ++A  LA  +       +  + G+EA E A+ +AR Y          
Sbjct: 63  FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRF 122

Query: 187 -IISLRNAYHGNAAGTMGATAQSNWKFN----VVQTGVHHALNPDPYRGVFGADGEMYAK 241
            +I+   +YHG + G++ A+     +      +          PDP R   GA+    A+
Sbjct: 123 KVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR--NGAE---DAE 177

Query: 242 DVQDLIDFGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF 300
            ++ L++      VA F++E + G     +  APGY   V     +AG + IADEV +G 
Sbjct: 178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGM 237

Query: 301 ARTGSHFWGFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-NYFN---TF 354
            R GS         GV PDI  + KG+  G  PL  ++  P++ E +      F    T+
Sbjct: 238 GRCGSPL-ALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTY 296

Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
            G+PV  AAG +VL +++++ L   A   G+ L   L AL+ ++  +  VRG G LLGV 
Sbjct: 297 AGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVV 356

Query: 415 FVTDRQLKTPAKAETL--YIMDKMKEMGVLV-----GKGGFYGNVFRITPPLCFTKEDAD 467
            + D       +   +   I     + G++       +    G+   + PPL  T  + D
Sbjct: 357 -LGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVD 415

Query: 468 YLVDVMDYSL 477
            L+ ++  +L
Sbjct: 416 GLLALLAGAL 425

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score =  316 bits (811), Expect = e-103
 Identities = 110/419 (26%), Positives = 197/419 (47%), Gaps = 26/419 (6%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLN 140
              +   +  +L D  G   LDA  G+  V  G+    + +    Q++ + + +T     
Sbjct: 38  TRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTT 97

Query: 141 HAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNA 193
           H  A   A+ LA   PG+L  VFF   G+EAN+  I M R Y    G  +   IIS +NA
Sbjct: 98  HVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNA 157

Query: 194 YHGNAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLID 248
           YHG+   +      +     + +   VHH   P+ +      D E +    A+++++ I 
Sbjct: 158 YHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAIL 217

Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
                 VA F++E +QG GG+I     Y P + +   K   L IADEV  GF RTG +++
Sbjct: 218 ELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWF 276

Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGH 365
           G +  G+ P I+T+AKG+ +G  P+G  +   E+A V+ +  +    T+ G+PV  A   
Sbjct: 277 GTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVAL 336

Query: 366 AVLKVIQKDKLQNNAHVVGS-YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
             L++++++ + ++   V + YLKE+  AL D + ++G+ +  G +  +    ++  +  
Sbjct: 337 ENLRILEEENILDHVRNVAAPYLKEKWEALTD-HPLVGEAKIVGMMASIALTPNKASRAK 395

Query: 425 AKAET----LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
             +E         ++     +++      G+   I+PPL  T  + D +   +  SL +
Sbjct: 396 FASEPGTIGYICRERCFANNLIM---RHVGDRMIISPPLVITPAEIDEMFVRIRKSLDE 451

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score =  314 bits (808), Expect = e-103
 Identities = 104/423 (24%), Positives = 175/423 (41%), Gaps = 32/423 (7%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P  +V  +  +L D+ GR+  D+  G+ T   GH    + +++  Q+  + +S      H
Sbjct: 33  PRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGH 92

Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNAY 194
            ++   AE +    PGNL  VFFT+SG+E    A+ M R Y    G      +I     Y
Sbjct: 93  PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGY 152

Query: 195 HGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGAD-----GEMYAKDVQDLI 247
           HG           +  +  F      V H  +       +        G   A ++  LI
Sbjct: 153 HGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLI 212

Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
           +   + ++A    E + G  G++    GYL    +   +   L + DEV  GF RTG   
Sbjct: 213 ELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SM 271

Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN---------TFGGN 357
           +G ++ GV PD++ +AK + NG IP+GAV+ + EI +    +             T+  +
Sbjct: 272 FGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAH 331

Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT 417
           PV  AAG A L ++QK+ L  +   V  + ++ L  +K     + D+R  G    ++   
Sbjct: 332 PVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKG-AKNVIDIRNFGLAGAIQIAP 390

Query: 418 DRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
                     E       + + G  V    F G+  +  P      +D D L D +   L
Sbjct: 391 RDGDAIVRPFE---AGMALWKAGFYV---RFGGDTLQFGPTFNSKPQDLDRLFDAVGEVL 444

Query: 478 SKM 480
           +K+
Sbjct: 445 NKL 447

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score =  312 bits (802), Expect = e-102
 Identities = 115/449 (25%), Positives = 186/449 (41%), Gaps = 46/449 (10%)

Query: 45  MPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVV--DGKMQYLFDENGRRYL 102
           + P        D  + ++ +     +      H Y  P+ VV    K  +++D N +RY 
Sbjct: 14  LVPRGSMEFVKDLKTPEDYINNELKYG----AHNY-DPIPVVLKRAKGVFVYDVNDKRYY 68

Query: 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVF 162
           D     ++V  GHCHP ++++++NQ K +   +  + +  +      L + +      V 
Sbjct: 69  DFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL--GYDKVL 126

Query: 163 FTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWK--F 212
             N+G EANE A  + R +             I+  +N + G   G + A+        F
Sbjct: 127 MMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 186

Query: 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL 272
                         PY             D++ L +     +V  F+ E IQG  G+I  
Sbjct: 187 GPFAPQFSKV----PY------------DDLEALEEELKDPNVCAFIVEPIQGEAGVIVP 230

Query: 273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-P 331
           +  YL  VY   KK   L +ADEVQ G  RTG        + V PD++ + K +  G  P
Sbjct: 231 SDNYLQGVYDICKKYNVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYP 289

Query: 332 LGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL 391
           + AV+   +I  V+    + +T+GGNP+  +     L V+  +KL  NA  +G    E L
Sbjct: 290 ISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENL 349

Query: 392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGN 451
                   I+ DVRG+G L  +EF              L I  K+KE G++         
Sbjct: 350 KRELKDSKIVRDVRGKGLLCAIEF-------KNELVNVLDICLKLKENGLITRDVH--DK 400

Query: 452 VFRITPPLCFTKEDADYLVDVMDYSLSKM 480
             R+TPPLC TKE  D   +++  ++   
Sbjct: 401 TIRLTPPLCITKEQLDECTEIIVKTVKFF 429

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score =  313 bits (805), Expect = e-102
 Identities = 107/424 (25%), Positives = 198/424 (46%), Gaps = 31/424 (7%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
              +   +  Y+  E+GRR +D   G+     G+    +VD++ +Q   + +++  Y+  
Sbjct: 37  QPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMAT 96

Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND---IISLRNAY 194
           + A   AE +A+  PG+L  +FFT  G+ A + A+  +  Y    G      II   + Y
Sbjct: 97  SPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGY 156

Query: 195 HGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLID 248
           HG+ A T   T ++     F++ Q  +    +P+P         E +     ++ +D I+
Sbjct: 157 HGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIE 215

Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
                 +A FL+E I   GG+I    GY        +K   L I+DEV  GF R G  ++
Sbjct: 216 SLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG-EWF 274

Query: 309 GFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN-------TFGGNPV 359
             E   GVVPDI+T AKG+ +G +PLG +  +  +   ++  N          T+   PV
Sbjct: 275 ASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPV 334

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
             AA  A +++++++ + + A  +  Y    L +L+D    + + R  G +  V+ + D 
Sbjct: 335 ACAAALANIELMEREGIVDQAREMADYFAAALASLRD-LPGVAETRSVGLVGCVQCLLDP 393

Query: 420 QLKTPAKAE---TLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476
                   +   TL I ++  E+G++V      G++  I+PPL  ++   D +V +M  +
Sbjct: 394 TRADGTAEDKAFTLKIDERCFELGLIV---RPLGDLCVISPPLIISRAQIDEMVAIMRQA 450

Query: 477 LSKM 480
           ++++
Sbjct: 451 ITEV 454

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score =  304 bits (780), Expect = 3e-99
 Identities = 110/470 (23%), Positives = 200/470 (42%), Gaps = 47/470 (10%)

Query: 24  FSQLAQKEESSLSE--HETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSK 81
           FS+LA  +  ++      + +               P++D+I  +   +      H Y  
Sbjct: 2   FSKLAHLQRFAVLSRGVHSSVASATSVATKKTVQGPPTSDDIFEREYKYG----AHNYHP 57

Query: 82  -PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
            P+ +  GK  YL+D  GR+Y D     + V  GHCHP +V+++ +Q+ ++  ++  + N
Sbjct: 58  LPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYN 117

Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRN 192
           + + ++ E +      N   V   N+G EA E A  +AR +             I+    
Sbjct: 118 NVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAG 175

Query: 193 AYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
            + G     + ++        F     G        PY             D+  L    
Sbjct: 176 NFWGRTLSAISSSTDPTSYDGFGPFMPGFDII----PY------------NDLPALERAL 219

Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310
              +VA F+ E IQG  G++   PGYL  V +   +   L IADE+Q G ARTG  +   
Sbjct: 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAV 278

Query: 311 EAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369
           +   V PDIV + K +  G+ P+ AV+   +I   +    + +T+GGNP+      A L+
Sbjct: 279 DYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALE 338

Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAET 429
           V++++ L  NA  +G  L+  L  L     ++  VRG+G L  +           A    
Sbjct: 339 VLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLLNAIVI--KETKDWDAWK-- 392

Query: 430 LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
             +  ++++ G+L       G++ R  PPL   +++    +++++ ++  
Sbjct: 393 --VCLRLRDNGLLAKPTH--GDIIRFAPPLVIKEDELRESIEIINKTILS 438

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score =  301 bits (774), Expect = 8e-99
 Identities = 108/416 (25%), Positives = 191/416 (45%), Gaps = 46/416 (11%)

Query: 75  LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
             + Y   P+ +   +  ++ D  G RY+D     + V  GH HP +++++++Q  R+  
Sbjct: 11  GANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTL 70

Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCN 185
           ++  + +  +  + E +A     N ++V   N+G EA E AI  AR +            
Sbjct: 71  TSRAFHSDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRA 128

Query: 186 DIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 243
           +II   + +HG   G +  ++   +K  F  +  G+       PY      D     + +
Sbjct: 129 EIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI----PY-----GD----LEAL 175

Query: 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART 303
           +  I      + A F+ E IQG  GI     G+L    +  KK   L +ADE+Q G  RT
Sbjct: 176 KAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRT 231

Query: 304 GSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA 362
           G   +  +   V PD+  + K +G G+ P+       +I  V    ++ +TFGGNP+  A
Sbjct: 232 GK-VFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACA 290

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
              A L+V++++KL   +  +G  L  +L  + +   +I +VRG+G  +G+E      L 
Sbjct: 291 VSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNP--MITEVRGKGLFIGIE------LN 342

Query: 423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
            PA+       +++K  G+L  +     NV RI PPL  ++ED ++    +   LS
Sbjct: 343 EPARP----YCEQLKAAGLLCKETH--ENVIRIAPPLVISEEDLEWAFQKIKAVLS 392

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score =  276 bits (709), Expect = 2e-88
 Identities = 115/424 (27%), Positives = 182/424 (42%), Gaps = 28/424 (6%)

Query: 80  SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL 139
             PL +  G    + D NG+ Y D F  +     GH    + D+I  Q+ +I HST+L +
Sbjct: 25  ENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGM 84

Query: 140 NHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRN 192
            +  A   AE L    P  L  VF+++SG EA E+A+ MA  Y            I+++N
Sbjct: 85  TNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKN 144

Query: 193 AYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
            YHG+  G +   +   +   +  +    + A  P  YR   G   E   + +++L    
Sbjct: 145 GYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLL 204

Query: 251 TSGH--VAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
              H  +A    E  +QG  G+I +  GYL  V +       L I DEV  GF RTG  F
Sbjct: 205 EEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF 264

Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL----TRRNYF---NTFGGNPV 359
              E   V PD++   KGI  G +P+     T +I +           F   +++ GN +
Sbjct: 265 -ACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQL 323

Query: 360 CTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR 419
             A     L + + + +          L   L  L      +GD+R  GF+ G E V  +
Sbjct: 324 GCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHA-LPHVGDIRQLGFMCGAELVRSK 382

Query: 420 QLKTPAKAET---LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476
           + K P  A+      +  KM+E+G+L       G+V    PPL  T E+   +V +M  +
Sbjct: 383 ETKEPYPADRRIGYKVSLKMRELGMLTRP---LGDVIAFLPPLASTAEELSEMVAIMKQA 439

Query: 477 LSKM 480
           + ++
Sbjct: 440 IHEV 443

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score =  237 bits (606), Expect = 2e-73
 Identities = 107/415 (25%), Positives = 168/415 (40%), Gaps = 32/415 (7%)

Query: 79  YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY 138
                 VV  +   L   +GRR +D          G+ HP +  ++ +QI  + H     
Sbjct: 23  PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82

Query: 139 LNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRN 192
           + HA A +    L +  P  L+ VF  +SG+ A E+A+ MA  Y           ++ RN
Sbjct: 83  ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142

Query: 193 AYHGNAAGTMGATAQSNW---KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
            YHG+  G M      N     +         A  P P   + G   E        L+  
Sbjct: 143 GYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFA--PAPQSRMDGEWDERDMVGFARLMA- 199

Query: 250 GTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
                +A  + E I QG GG+    P +L  + K   + G L IADE+  GF RTG  F 
Sbjct: 200 AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258

Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR---RNYF--NTFGGNPVCTA 362
             E   + PDI+ + K +  G + L A +TT E+AE ++      +    TF GNP+  A
Sbjct: 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
           A +A L +++    Q     +   L+E+L   +D   ++ DVR  G +  VE        
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVE------TT 371

Query: 423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL 477
            P     L       E GV +     +G +  + PP     +    L   ++ ++
Sbjct: 372 HPVNMAALQ--KFFVEQGVWIRP---FGKLIYLMPPYIILPQQLQRLTAAVNRAV 421

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score =  223 bits (570), Expect = 7e-68
 Identities = 105/467 (22%), Positives = 173/467 (37%), Gaps = 49/467 (10%)

Query: 33  SSLSEHETFLPRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYS-------KPLNV 85
           SS   H      +P   +      G + ++I+A         L+H YS        P+  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMAAATGGLTPEQIIAVDGA----HLWHPYSSIGREAVSPVVA 58

Query: 86  VDGKMQYLF---DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA 142
           V     +L    D      LDA     T   GH HP +  ++  Q++ + H     L H 
Sbjct: 59  VAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHE 118

Query: 143 IA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYH 195
            A   A+ L    P  L  VFF++SG+ + E+A  MA  Y       G   +++ R  YH
Sbjct: 119 PAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYH 178

Query: 196 GNAAGTMGATAQSNWKFNVVQTGV--HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
           G+    M          + + T V       P   R         Y+   +  +    +G
Sbjct: 179 GDTFLAMSICDPHGG-MHSLWTDVLAAQVFAPQVPRDY----DPAYSAAFEAQLA-QHAG 232

Query: 254 HVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
            +A  + E + QG GG+    P YL  +    ++   L I DE+  GF RTG+ F   + 
Sbjct: 233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADH 291

Query: 313 HGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR---RNYF--NTFGGNPVCTAAGHA 366
            GV PDI+ + K +  G + L A + T ++A  ++           TF  NP+  A   A
Sbjct: 292 AGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVA 351

Query: 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK 426
            ++++     +     + + L   L   +     + DVR  G +  +E      L     
Sbjct: 352 SVELLLGQDWRTRITELAAGLTAGLDTARA-LPAVTDVRVCGAIGVIECDRPVDLA---- 406

Query: 427 AETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
                      + GV +     + N+    PP   T  +   +   M
Sbjct: 407 ----VATPAALDRGVWL---RPFRNLVYAMPPYICTPAEITQITSAM 446

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score =  204 bits (520), Expect = 5e-58
 Identities = 84/478 (17%), Positives = 155/478 (32%), Gaps = 84/478 (17%)

Query: 82  PLNVVD---GKMQYLFDENG----RRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQH 133
            + V+D   G+   ++  +      +  DA     T          +   +     R  H
Sbjct: 356 TVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGH 415

Query: 134 STVLYLNHAIA-DFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLYTGCND----- 186
                  +  A   AE L   +  G    V+F+++G+ A E+A+ MA      +      
Sbjct: 416 VMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEA 475

Query: 187 ----------IISLRNAYHGNAAGTMGATAQSNWK------------------FNVVQTG 218
                     +I+LR +YHG+  G M A A S +                      +  G
Sbjct: 476 TEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNG 535

Query: 219 VHHALNPDPYRGVFGADGEMY-----------------------AKDVQDLIDFGTSGHV 255
             +   P+ +  +    G                          +K +Q+      S HV
Sbjct: 536 SWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHV 595

Query: 256 AGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
              + E +  G GG+  + P +   +    +      I DEV  GF R G      E  G
Sbjct: 596 GALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLG 654

Query: 315 VVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN------TFGGNPVCTAAGHAV 367
             PDI   AK +  G +PL   + T  + +  +  +         ++  + +  A     
Sbjct: 655 CKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKA 714

Query: 368 LKVIQKDKLQNNAHVVGSYLK-----ERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
           ++  +  +  +N    G  L+     E +  +   +  +  V   G L  +E   D    
Sbjct: 715 IQWFKDPETNHNITSQGKTLRELWDEELVQQISS-HSAVQRVVVIGTLFALELKADASNS 773

Query: 423 TPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM 480
             A      ++  ++E G+        GNV  +    C + E    L+  +   L + 
Sbjct: 774 GYASLYAKSLLIMLREDGIFT---RPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453

 Score =  137 bits (348), Expect = 5e-36
 Identities = 86/354 (24%), Positives = 142/354 (40%), Gaps = 48/354 (13%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
            L + D +  +  D +G  YLD FGG   +  GH HP V  +I   +           +H
Sbjct: 40  GLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSH---GVQYAASH 96

Query: 142 AI-ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA-- 198
            +   +AE + +  P +++ + FT SGTE   LA+ +AR +TG   I+     YHG    
Sbjct: 97  PLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDF 155

Query: 199 --AGTMGATAQSNWKFNVVQTGVHHAL----------NPDPYRGVFGADGEMYAKDVQDL 246
             +G                 GV              + +  R VF   G          
Sbjct: 156 SASGYNSHF------DGQPAPGVLPETTANTLLIRPDDIEGMREVFANHG---------- 199

Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306
                   +A F++E +    G+  ++  +L    +  ++ G L I DEV +GF R G+H
Sbjct: 200 ------SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH 252

Query: 307 FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCT 361
                   V PD+  +AK    G+P G +    ++  VL+R +        TF GNP+  
Sbjct: 253 GM-QALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITA 311

Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           AA  A +  I +D +    + +G + +E +  L  + G+     GR     +  
Sbjct: 312 AAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMP 365

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465

 Score =  133 bits (337), Expect = 2e-34
 Identities = 77/362 (21%), Positives = 128/362 (35%), Gaps = 49/362 (13%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           PL +  G      D +G  Y++  G       GH HP +  ++   +        L    
Sbjct: 83  PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV---GLNLSTQT 139

Query: 142 AI-ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN--A 198
              A FAEA+  + P ++ +V FTNSGTEAN +A+  A   TG   +++    YHG    
Sbjct: 140 ENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLN 198

Query: 199 AGTMGATAQSNWKFNVVQTGVHHAL-----NPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
             +  A   +           +H +     + +    +    G                 
Sbjct: 199 FASGHAPTNA----------PYHVVLGVYNDVEGTADLLKRHG----------------H 232

Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEA 312
             A  L E + G GG +     +L  +     + G L I DEV     +  G+     E 
Sbjct: 233 DCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGGAQ----EM 288

Query: 313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCTAAGHAV 367
            G+  D+ T+ K IG G+  GA     ++ E              TF  N +  +AGHA 
Sbjct: 289 LGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA 348

Query: 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA 427
           L  I   +  ++    G   +  L  +  +        G G L  +   +   +++    
Sbjct: 349 LTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTI-HFSRAPIRSAGDV 407

Query: 428 ET 429
             
Sbjct: 408 RA 409

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434

 Score =  116 bits (294), Expect = 8e-29
 Identities = 101/387 (26%), Positives = 149/387 (38%), Gaps = 86/387 (22%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           P+ +  GK  Y +D +G +Y+D       +  GH HP++  +I    +            
Sbjct: 38  PIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALE 97

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
                       A+ L   MP  L  V F NSGTEA    I +AR YTG   I+     Y
Sbjct: 98  VKF---------AKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCY 147

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG++      AG    T+G         + AQ      FN          N +  +    
Sbjct: 148 HGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN----------NVETLKEALD 197

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
             G                  VA  L E I G  GI+E  PG+L  V + + +AG L I 
Sbjct: 198 KWG----------------HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIY 241

Query: 294 DEVQAGF--ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF 351
           DEV   F     G+     +  GV PD+  + K IG G+P+GA     EI E +      
Sbjct: 242 DEVITAFRFMYGGAQ----DLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVA----- 292

Query: 352 N---------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402
                     T  GNP   A+G A L+V+Q++ L      +G+ L++ +     K+ I  
Sbjct: 293 -PLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDI 351

Query: 403 DVRGRGFLLGVEFVTDRQLKTPAKAET 429
            +      L V + T   ++    A+ 
Sbjct: 352 TLNRLKGALTV-YFTTNTIEDYDAAQD 377

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434

 Score =  116 bits (293), Expect = 1e-28
 Identities = 90/385 (23%), Positives = 153/385 (39%), Gaps = 82/385 (21%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           P  V  G+  YL+  +G R +D       +  GH HP V++++   + R        +  
Sbjct: 39  PFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAPGEAE 98

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
            +L         AE +   +     ++ F NSGTEA   AI +AR YTG + I+     Y
Sbjct: 99  VLL---------AEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCY 148

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG+       AG      G         A A+      +N          + +    VF 
Sbjct: 149 HGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN----------DVEALERVFA 198

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
             G                  +AG + E +    G+I     +L A+ +  +++G L I 
Sbjct: 199 EYG----------------DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLIL 242

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
           DEV  GF R G          +  DI+ + K IG G P+GAV  + E+  +LT       
Sbjct: 243 DEVVTGF-RLGLEGA-QGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLT------P 294

Query: 353 --------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   TF  +P+  AAG A LK ++++ + + +      L+E  + + D+ G+   +
Sbjct: 295 QGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTI 354

Query: 405 RGRGFLLGVEFVTDRQLKTPAKAET 429
                ++ + F+   ++   A+A  
Sbjct: 355 NRVESMMQL-FIGVEEVSNAAQARK 378

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427

 Score =  115 bits (290), Expect = 3e-28
 Identities = 90/371 (24%), Positives = 144/371 (38%), Gaps = 81/371 (21%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           P+     K  Y +D +G RY+D  G      CGH HP V++++   +++           
Sbjct: 35  PIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALE 94

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
            VL         AE +   +P ++++V F NSGTEA    + + R YTG + II     Y
Sbjct: 95  NVL---------AEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCY 144

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG+A      AG    T+G          T  +     +N          + +  + +F 
Sbjct: 145 HGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN----------DLEAVKALFA 194

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
            +                 G +AG + E I G  G I    G+L  + +   +   L + 
Sbjct: 195 ENP----------------GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVF 238

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
           DEV  GF R        E  GV PD+ T+ K IG G+P+GA     EI +++        
Sbjct: 239 DEVITGF-RIAYGGV-QEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVA------P 290

Query: 353 --------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   T  GNP+   AG   L+++++         +   L + L A+  + G     
Sbjct: 291 AGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACG 350

Query: 405 RGRGFLLGVEF 415
                + G  F
Sbjct: 351 GQVSGMFGFFF 361

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429

 Score =  112 bits (284), Expect = 2e-27
 Identities = 92/376 (24%), Positives = 138/376 (36%), Gaps = 82/376 (21%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           PL +      YLFD +G+ Y+D  G    +  GH HP +  +++  ++R        +  
Sbjct: 36  PLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEME 95

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
             +         A+ +   +P  + +V   NSGTEA   AI +AR YTG + II     Y
Sbjct: 96  VKM---------AQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCY 145

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG+A      AG    T+G           A+      +N          +    R  F 
Sbjct: 146 HGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN----------DLASVRQAFE 195

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
                                VA  + E + G    I   P +LP +     + G L I 
Sbjct: 196 QYP----------------QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLII 239

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
           DEV  GF R        + + V+PD+  + K IG G+P+GA     E+   L        
Sbjct: 240 DEVMTGF-RVALAGA-QDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALA------P 291

Query: 353 --------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
                   T  GNP+  AAG A L  I +  +      +   L   L     +  I   V
Sbjct: 292 TGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVV 351

Query: 405 RGRGFLLGVEFVTDRQ 420
              G + G+ F T+  
Sbjct: 352 NHVGGMFGL-FFTNAD 366

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429

 Score =  111 bits (280), Expect = 6e-27
 Identities = 91/388 (23%), Positives = 154/388 (39%), Gaps = 89/388 (22%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           PL +  GK   ++D +G  Y+D       +  GH +  VV+++    +R        +  
Sbjct: 36  PLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIE 95

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
             L         A+ +  ++P ++++V   NSGTEA   A+ +AR YTG N I+     Y
Sbjct: 96  NKL---------AKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCY 145

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG+       AG    T+G           A++     +N          + +  +  F 
Sbjct: 146 HGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN----------DLESVKYAFE 195

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
             G                  +A  + E + G  G++   PG+L  + +  ++ G L I 
Sbjct: 196 QFG----------------DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIF 239

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
           DEV  GF R   +      +GV PD+  + K IG G+P+GA     EI   +        
Sbjct: 240 DEVMTGF-RVAYNCG-QGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVA------P 291

Query: 353 --------TFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGII 401
                   T  GNP+  AAG+  L  +      + +  A      L+  L    +K+GI 
Sbjct: 292 SGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKA----EMLEAGLRKAAEKHGIP 347

Query: 402 GDVRGRGFLLGVEFVTDRQLKTPAKAET 429
             +   G ++G+ F TD  +     A++
Sbjct: 348 HHINRAGSMIGI-FFTDEPVINYDAAKS 374

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424

 Score =  108 bits (272), Expect = 7e-26
 Identities = 100/390 (25%), Positives = 154/390 (39%), Gaps = 92/390 (23%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-------IQHS 134
           P  +V G+  Y++D +G RYLD       +  GH HP V+  +   ++R           
Sbjct: 35  PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPLE 94

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
             L         A+ +    P  + +V F NSGTEA   A+ +AR YTG   I+  R  Y
Sbjct: 95  VAL---------AKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNY 144

Query: 195 HGNA------AG----TMG---------ATAQS--NWKFNVVQTGVHHALNPDPYRGVFG 233
           HG+A      AG    T+G           A+     ++N          +P+  R V  
Sbjct: 145 HGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN----------DPEGLREVLK 194

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
             G                  +A  + E + G  G++     +L A+    K  G L IA
Sbjct: 195 RRG----------------EEIAAIIFEPVVGNAGVLVPTEDFLKAL-HEAKAYGVLLIA 237

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN- 352
           DEV  GF R        E  G+ PD+VT+ K +G G+P  A     EI E +        
Sbjct: 238 DEVMTGF-RLAFGGA-TELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVA------P 289

Query: 353 --------TFGGNPVCTAAGHAVLKVIQK-----DKLQNNAHVVGSYLKERLTALKDKYG 399
                   T  GNP+  AAG A L+++++       L++      + L+  L  +  + G
Sbjct: 290 LGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLG----ARLEAGLKEVLKEKG 345

Query: 400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAET 429
           +   V   G ++ V F T+  + T   A  
Sbjct: 346 LPHTVNRVGSMITV-FFTEGPVVTFQDARR 374

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 52/363 (14%), Positives = 104/363 (28%), Gaps = 43/363 (11%)

Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQ 207
           +  A ++      +   + G  A  +   +   Y               N      A   
Sbjct: 82  KDKAKELFN-YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDTTAAHV 139

Query: 208 SNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
                  +      A + + Y       G+   K +++ I    + ++   +S       
Sbjct: 140 ELNGCKAINIVTEKAFDSETYDD---WKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSA 196

Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP---------- 317
           G   ++   L  VY+  K+ G   + D  +             +                
Sbjct: 197 GGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKY 256

Query: 318 -DIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-------YFNTFGGNPV--CTAAGHAV 367
            D +TM+      + +G +V   +  E+ T           F T+GG       A    +
Sbjct: 257 ADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGL 316

Query: 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF----VTDRQLKT 423
            +  +++ L         YL +RL        I     G    +  +     +   Q   
Sbjct: 317 EEGTEEEYLHYR-IGQVKYLGDRLREA--GIPIQYPTGGHAVFVDCKKLVPQIPGDQFPA 373

Query: 424 PAKAETLYIMD--KMKEMGVL-VGKGGFYG-------NVFRIT-PPLCFTKEDADYLVDV 472
            A    LY+    +  E+G   +G+    G          R+T     +T +  DY+ D 
Sbjct: 374 QAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADA 433

Query: 473 MDY 475
           +  
Sbjct: 434 LIG 436

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 9e-04
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 4/28 (14%)

Query: 126 NQIKRIQHSTVLYLNHAIADFAEALASK 153
             +K++Q S  LY   A  D A ALA K
Sbjct: 20  QALKKLQASLKLY---A-DDSAPALAIK 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	480
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	100.0
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	100.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	100.0
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	100.0
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	100.0
3hmu_A	472	Aminotransferase, class III; structural genomics,	100.0
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	100.0
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	100.0
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	100.0
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	100.0
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	100.0
1z7d_A	433	Ornithine aminotransferase; structural genomics co	100.0
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	100.0
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	100.0
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	100.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	100.0
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	100.0
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	100.0
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	100.0
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	100.0
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	100.0
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	100.0
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	100.0
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	100.0
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	100.0
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	100.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	100.0
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	100.0
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	100.0
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	100.0
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	100.0
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.98
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.98
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.98
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.98
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.98
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.98
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.97
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.97
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.97
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.97
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.97
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.97
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.97
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.97
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.97
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.97
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.97
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.97
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.97
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.97
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.97
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.97
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.97
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.97
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.97
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.97
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.96
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.96
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.96
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.96
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.96
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.96
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.96
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.96
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.96
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.96
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.96
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.96
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.96
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.96
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.96
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.96
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.96
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.96
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.96
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.95
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.95
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.95
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.95
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.95
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.95
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.95
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.95
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.95
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.95
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.95
1svv_A	359	Threonine aldolase; structural genomics, structura	99.95
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.94
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.94
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.94
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.94
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.94
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.94
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.94
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.94
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.94
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.94
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.94
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.94
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.94
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.93
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.93
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.93
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.93
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.93
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.93
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.93
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.93
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.92
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.92
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.92
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.92
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.92
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.92
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.92
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.92
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.91
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.91
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.91
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.91
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.91
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.91
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.9
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.9
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.9
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.9
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.9
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.9
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.9
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.9
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.9
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.9
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.9
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.89
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.89
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.89
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.89
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.89
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.89
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.89
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.89
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.88
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.88
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.88
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.87
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.87
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.86
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.86
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.86
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.86
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.86
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.85
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.85
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.85
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.84
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.84
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.83
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.83
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.83
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.82
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.82
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.82
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.81
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.81
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.8
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.79
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.78
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.77
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.76
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.75
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.75
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.75
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.72
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.72
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.69
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.69
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.64
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.63
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.63
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.63
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.62
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.58
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.4
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.39
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.26
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.59

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=1.7e-83  Score=660.52  Aligned_cols=423  Identities=31%  Similarity=0.493  Sum_probs=374.2

Q ss_pred             CCCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc
Q 011669           53 PPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (480)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~  132 (480)
                      .++|||+++++++++++++.++...  ..|+++++|+|+||||.|||+||||++|++++++||+||+|++|+.+|++++.
T Consensus        20 t~iPGP~s~~l~~r~~~~~~~~~~~--~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~   97 (456)
T 4atq_A           20 GAFPGPKSQALAERRSAVVAAGVAS--GVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT   97 (456)
T ss_dssp             SSSSCHHHHHHHHHHHHHBCTTCCC--SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS
T ss_pred             CCCCChHHHHHHHHHHHhCCCCCCC--CCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc
Confidence            3688999999999999999887654  34999999999999999999999999999999999999999999999999988


Q ss_pred             ccccc-cCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC-
Q 011669          133 HSTVL-YLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-  209 (480)
Q Consensus       133 ~~~~~-~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~-  209 (480)
                      |.... ++++...+|+|+|++..|. .+++|+|+||||||||.|||+||.+++|.+||+|+++|||++.+++++++... 
T Consensus        98 ~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~  177 (456)
T 4atq_A           98 HTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMP  177 (456)
T ss_dssp             CCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTT
T ss_pred             CcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccc
Confidence            86543 4578889999999999986 47899999999999999999999999999999999999999999999987653 


Q ss_pred             ccccccC--CCeeEecCCCCcCCCCCC-ChHHHHHHHHHHHH-ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHH
Q 011669          210 WKFNVVQ--TGVHHALNPDPYRGVFGA-DGEMYAKDVQDLID-FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK  285 (480)
Q Consensus       210 ~~~~~~~--~g~~~~~~p~~~~~~~~~-d~~~~~~~le~~i~-~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~  285 (480)
                      ++....+  .++..++++.+++..... +.....+...+.++ ...++++|+||+||+||++|.++|+++||++|+++|+
T Consensus       178 ~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~  257 (456)
T 4atq_A          178 YKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAK  257 (456)
T ss_dssp             TTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH
T ss_pred             cccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHh
Confidence            3333332  578888888777655432 22222222222222 2335689999999999999999999999999999999


Q ss_pred             HhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHH
Q 011669          286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (480)
Q Consensus       286 ~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~  365 (480)
                      +||++||+|||||||||+| ++|+++++|+.|||+|++|++|||+|+|++++++++++.+....|++||++||++|++++
T Consensus       258 ~~gillI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaal  336 (456)
T 4atq_A          258 EKGIVFIADEVQSGFCRTG-EWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAAL  336 (456)
T ss_dssp             HHTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHH
T ss_pred             hcCCceEecccccccCCcc-ccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhH
Confidence            9999999999999999999 899999999999999999999999999999999999999998889999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhc-----CceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcC
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-----GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMG  440 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~-----~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G  440 (480)
                      ++|++++++++.+++++++++++++|+++.+++     +.+++|||.|+|++++++.+. ++.|+......+.+.|+++|
T Consensus       337 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~-~~~~~~~~~~~v~~~~~~~G  415 (456)
T 4atq_A          337 AAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPG-SKEPNAELTKAVAAACLKEG  415 (456)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTT-SCCBCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCC-CCCcCHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999998876     568999999999999998754 45577777888999999999


Q ss_pred             ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |++.+++..+++|||.||+++|+++||+++++|+++|+.
T Consensus       416 vl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          416 VIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             EECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            999998888899999999999999999999999999975

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=100.00  E-value=3.5e-79  Score=630.72  Aligned_cols=413  Identities=28%  Similarity=0.441  Sum_probs=359.8

Q ss_pred             HHHHHHhhhcCCccccc----cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-
Q 011669           62 EILAKRKTFLSPSLFHL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-  136 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-  136 (480)
                      .+.+++++|.++.....    .+.|++|++|+|+||||+|||+||||++|++++++||+||+|++|+.+|++++.+... 
T Consensus        26 ~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~  105 (473)
T 4e3q_A           26 SWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAF  105 (473)
T ss_dssp             SHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCC
T ss_pred             cHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccccc
Confidence            36677788887654322    2459999999999999999999999999999999999999999999999999865433 


Q ss_pred             -ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCC
Q 011669          137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       137 -~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                       .+.++...+|+|+|++..|.++++|+|+||||||||.|||+||.+      +++.+||+|+++|||.+.+++++++.+.
T Consensus       106 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~  185 (473)
T 4e3q_A          106 FGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPY  185 (473)
T ss_dssp             TTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGG
T ss_pred             ccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccc
Confidence             345788999999999999988999999999999999999999976      5678999999999999999999998653


Q ss_pred             cc-ccccCCCeeEecCCCCcCCCCCCC-hH----HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHH
Q 011669          210 WK-FNVVQTGVHHALNPDPYRGVFGAD-GE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (480)
Q Consensus       210 ~~-~~~~~~g~~~~~~p~~~~~~~~~d-~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  283 (480)
                      .+ +..+.+++.+++.|+.++.....+ .+    .+.+++++.+....++++|+||+||+||++|+++|+++||++|+++
T Consensus       186 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~l  265 (473)
T 4e3q_A          186 NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPI  265 (473)
T ss_dssp             GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHH
T ss_pred             ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHH
Confidence            32 223347888888888776544332 22    2356777777766667899999999999999999999999999999


Q ss_pred             HHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhc-------CCCccccCC
Q 011669          284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT-------RRNYFNTFG  355 (480)
Q Consensus       284 ~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~-------~~~~~~t~~  355 (480)
                      |+|||++||+||||||||||| ++|+++++|+.||++|++|+++|| +|+|++++++++++.+.       ...|++||+
T Consensus       266 c~~~gilLI~DEV~tGfGRtG-~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~  344 (473)
T 4e3q_A          266 LRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTAS  344 (473)
T ss_dssp             HHHTTCCEEEECTTTSSSTTS-SSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTT
T ss_pred             hcccceEEeccCccccCCccc-chhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCC
Confidence            999999999999999999999 899999999999999999999988 89999999999988764       346889999


Q ss_pred             CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC---HHHHHHH
Q 011669          356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA---KAETLYI  432 (480)
Q Consensus       356 ~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~  432 (480)
                      +||++|++++++|++++++++.+++++++++|+++|+++. +++.+.++||.|+|++++++.+..++.|.   ......+
T Consensus       345 Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~-~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~  423 (473)
T 4e3q_A          345 GHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA-ERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERI  423 (473)
T ss_dssp             TCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHT-TSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred             CCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHh-cCCCeeEEeecceEEEEEEecCccccccccccHHHHHHH
Confidence            9999999999999999999999999999999999999986 45779999999999999999887665542   2346778


Q ss_pred             HHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          433 MDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       433 ~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+.|+++||++.+.+   +.+||+||+++|++|+|+++++|+++|++
T Consensus       424 ~~~~~~~Gll~~~~g---~~i~l~PPL~it~~eid~~~~~l~~al~~  467 (473)
T 4e3q_A          424 ANTCTDLGLICRPLG---QSVVLCPPFILTEAQMDEMFDKLEKALDK  467 (473)
T ss_dssp             HHHHHHTTEECEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcEEEecC---CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999998764   78999999999999999999999998875

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=100.00  E-value=1.6e-72  Score=576.48  Aligned_cols=392  Identities=24%  Similarity=0.338  Sum_probs=337.5

Q ss_pred             CCCHHHHHHHHhhhcCCcc----ccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc
Q 011669           57 GPSADEILAKRKTFLSPSL----FHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (480)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~  132 (480)
                      .|++++++++.+++++.+.    ..|.+.|+++++|+|+||||+|||+||||++|++++++||+||+|++|+.+|++++.
T Consensus        41 ~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~  120 (454)
T 4ao9_A           41 NPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI  120 (454)
T ss_dssp             CHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS
T ss_pred             CcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC
Confidence            3678999999999985432    224456999999999999999999999999999999999999999999999999875


Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +..  .++....+++++|++.+|. +++|+|+|||||||+.|||+||.+++|++||+|+++|||++.+.++.++......
T Consensus       121 ~~~--~~~~~~~~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~  197 (454)
T 4ao9_A          121 NLT--GHNLLEGRLARLICERFPQ-IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPF  197 (454)
T ss_dssp             CCC--SEESSHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCS
T ss_pred             Ccc--CCcHHHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCC
Confidence            432  3456778999999999984 7999999999999999999999999999999999999999998877654322111


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                           ++...+        | +|    .+.+++++++. .+++++||+||+||++|.++|+++||++|+++|+|||++||
T Consensus       198 -----~~~~~p--------~-nd----~~~l~~~l~~~-~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI  258 (454)
T 4ao9_A          198 -----DFLVLP--------Y-ND----AQTARAQIERH-GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLV  258 (454)
T ss_dssp             -----EEEEEC--------T-TC----HHHHHHHHHHT-GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEE
T ss_pred             -----CcccCC--------C-ch----HHHHHHHHhhc-CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEE
Confidence                 222222        2 34    57788888764 34899999999999999999999999999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCC----CccccCCCcHHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~----~~~~t~~~~~~~~aaa~a~L  368 (480)
                      +|||||  ||+| .+|+++++|+.||++|++|++|||+|+|++++++++++.+.+.    .|++||++||++|+|++++|
T Consensus       259 ~DEV~t--GR~G-~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L  335 (454)
T 4ao9_A          259 FDEVMT--SRLA-PHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGL  335 (454)
T ss_dssp             EECTTG--GGGS-TTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHH
T ss_pred             EECCCc--CCCc-cccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence            999999  4999 7888999999999999999999999999999999999988653    37899999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHcCcee
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEMGVLV  443 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v  443 (480)
                      ++++++++.+++++++++|+++|+++.++++.+.+++|.|+|++++|+.++..     ...+......+...|+++||++
T Consensus       336 ~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~  415 (454)
T 4ao9_A          336 TKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYS  415 (454)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEEC
T ss_pred             HHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEE
Confidence            99999999999999999999999999999999999999999999999764321     1123445567888999999999


Q ss_pred             eccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          444 GKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       444 ~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .|.+      ++.+++.+|++|||+++++|++++.+
T Consensus       416 ~p~~------~~~~s~~~T~~dId~~l~al~~~l~~  445 (454)
T 4ao9_A          416 SPRG------FVVLSLPLTDADIDRYVAAIGSFIGG  445 (454)
T ss_dssp             CTTC------EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCC------CEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence            8753      24466789999999999999999875

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=1.3e-68  Score=554.33  Aligned_cols=419  Identities=35%  Similarity=0.516  Sum_probs=369.5

Q ss_pred             CCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc
Q 011669           54 PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH  133 (480)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~  133 (480)
                      ..++|++.+++++.++++.++..  ...|+++++|+|+||||.|||+||||++|++++++||+||+|++|+.+|++++.|
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~   98 (453)
T 4ffc_A           21 PLPGPRSGALAERRRAAVSAGVG--STAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTH   98 (453)
T ss_dssp             CSSCHHHHHHHHHHHHHBCTTTC--CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC
T ss_pred             CCCCCCHHHHHHHHHHhcCCCcC--CCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccc
Confidence            46778899999999999877643  2568999999999999999999999999999999999999999999999998866


Q ss_pred             cc-cccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Cc
Q 011669          134 ST-VLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NW  210 (480)
Q Consensus       134 ~~-~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~  210 (480)
                      .. ..++++...+|+++|++.++.+ .++|+|+|||+|||+.|||+++.++++++||+++++|||++.+++++++.. .+
T Consensus        99 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~  178 (453)
T 4ffc_A           99 TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPY  178 (453)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccc
Confidence            44 3577899999999999999854 579999999999999999999999999999999999999999999998764 44


Q ss_pred             cccccC--CCeeEecCCCCcCCCCCCChHHHH----HHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHH
Q 011669          211 KFNVVQ--TGVHHALNPDPYRGVFGADGEMYA----KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI  284 (480)
Q Consensus       211 ~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~----~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~  284 (480)
                      +..+..  .++..+++|.+++++++.+.....    +.|++.+   .++++++||+||+|+++|.++++++|+++|+++|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i---~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~  255 (453)
T 4ffc_A          179 KSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI---GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWA  255 (453)
T ss_dssp             TTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHT---CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhc---CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHH
Confidence            443332  578888888888877765543322    3333333   2457999999999999999999999999999999


Q ss_pred             HHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHH
Q 011669          285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAG  364 (480)
Q Consensus       285 ~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa  364 (480)
                      ++||++||+||||+||||+| .+++++++++.||++||||++++|+|+||+++++++++.+....+.+||++||++++++
T Consensus       256 ~~~~~llI~DEv~~g~g~~g-~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa  334 (453)
T 4ffc_A          256 SENGVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAA  334 (453)
T ss_dssp             HHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHH
T ss_pred             HHcCCEEEEecCccCCCccc-ccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHH
Confidence            99999999999999999999 68888889999999999999999999999999999999988877889999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee
Q 011669          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG  444 (480)
Q Consensus       365 ~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~  444 (480)
                      +++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++.. ..++.|+......+.+.|+++||++.
T Consensus       335 ~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~v~  413 (453)
T 4ffc_A          335 VAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVK-PGTLEPDAALTKSIAAEALSQGVLIL  413 (453)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBC-TTSCCBCHHHHHHHHHHHHHTTEECC
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEec-CcccCCCHHHHHHHHHHHHhCCCEEe
Confidence            99999988889999999999999999999988999899999999999999975 33344666667889999999999999


Q ss_pred             ccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          445 KGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       445 ~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++.+++++||+||+++|++++++++++|++++++
T Consensus       414 ~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  448 (453)
T 4ffc_A          414 TCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRA  448 (453)
T ss_dssp             EECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            98877899999999999999999999999999865

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=100.00  E-value=2.9e-68  Score=551.43  Aligned_cols=422  Identities=32%  Similarity=0.460  Sum_probs=368.5

Q ss_pred             CCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc
Q 011669           54 PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH  133 (480)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~  133 (480)
                      ..++|++.+++++.++++.++...  ..|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.|
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~   95 (451)
T 3oks_A           18 AIPGPRSQALIDRKGTAVARGVGT--TMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTH   95 (451)
T ss_dssp             CSSCHHHHHHHHHHHHHBCTTBCC--SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSC
T ss_pred             CCCCCcHHHHHHHHHhhccCCcCC--CCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhccc
Confidence            466789999999999998776432  468999999999999999999999999999999999999999999999998766


Q ss_pred             cc-cccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Cc
Q 011669          134 ST-VLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NW  210 (480)
Q Consensus       134 ~~-~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~  210 (480)
                      .. ..++++...+|+++|++.++.+ .++|+|+|||+|||+.|+|+++.++++++||+++++|||++.+++++++.. .+
T Consensus        96 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~  175 (451)
T 3oks_A           96 TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPY  175 (451)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence            44 3577899999999999999854 579999999999999999999999999999999999999999999998764 44


Q ss_pred             cccccC--CCeeEecCCCCcCCCC-CCC----hHHHHHHHHHHHHc-cCCCceEEEEEcccCCCCcceeCCCChHHHHHH
Q 011669          211 KFNVVQ--TGVHHALNPDPYRGVF-GAD----GEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (480)
Q Consensus       211 ~~~~~~--~g~~~~~~p~~~~~~~-~~d----~~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  282 (480)
                      +.....  .++..++++.++++++ +.|    ....++.+++.+++ ..++++++||+||+|+++|.+.++++|+++|++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~  255 (451)
T 3oks_A          176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD  255 (451)
T ss_dssp             TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence            443332  5778888876665542 112    22234555555543 224589999999999999999999999999999


Q ss_pred             HHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHH
Q 011669          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA  362 (480)
Q Consensus       283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~a  362 (480)
                      +|++||++||+||||+||||+| .+++++++++.||++||||++++|+|+||+++++++++.+....+.+||++||++++
T Consensus       256 l~~~~g~~lI~DEv~~g~g~~g-~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~a  334 (451)
T 3oks_A          256 WCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACA  334 (451)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHH
T ss_pred             HHHHcCCEEEEEecccCCCccc-cchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHH
Confidence            9999999999999999999999 688889999999999999999999999999999999999888778999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCce
Q 011669          363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL  442 (480)
Q Consensus       363 aa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~  442 (480)
                      +++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++.. ..++.|+......+.+.|+++||+
T Consensus       335 aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~  413 (451)
T 3oks_A          335 AALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVK-AGTTEPDADLTKALCAGAHAAGVI  413 (451)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBS-TTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEec-CccCCCCHHHHHHHHHHHHhCCcE
Confidence            9999999988889999999999999999999988899899999999999999975 333446666678899999999999


Q ss_pred             eeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          443 VGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       443 v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.+++.+++++||+||+++|+++|++++++|++++++
T Consensus       414 v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          414 VLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             CEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            9998877899999999999999999999999999875

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=5e-68  Score=552.82  Aligned_cols=413  Identities=25%  Similarity=0.407  Sum_probs=357.6

Q ss_pred             HHHHHHHhhhcCCccccc--c--CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 011669           61 DEILAKRKTFLSPSLFHL--Y--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~--~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~  136 (480)
                      ..+.++.++++++...+.  +  ..|+++++|+|+|+||.|||+||||++|++++++||+||+|++|+.+|++++.+.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~   91 (476)
T 3i5t_A           12 GAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASP   91 (476)
T ss_dssp             -CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT
T ss_pred             hHHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccc
Confidence            456777778877654322  2  258999999999999999999999999999999999999999999999999876554


Q ss_pred             -ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCC
Q 011669          137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       137 -~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                       .+.++...+|+++|++.+|.+.++|+|+|||+|||+.||++++.+      +++++||+++++|||++.+++++++.+.
T Consensus        92 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~  171 (476)
T 3i5t_A           92 WYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTG  171 (476)
T ss_dssp             TTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGG
T ss_pred             CccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChh
Confidence             578999999999999999877899999999999999999999988      8899999999999999999999998776


Q ss_pred             cccccc--CCCeeEecCCCCcCCCCCCChHH----HHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHH
Q 011669          210 WKFNVV--QTGVHHALNPDPYRGVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS  283 (480)
Q Consensus       210 ~~~~~~--~~g~~~~~~p~~~~~~~~~d~~~----~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  283 (480)
                      ++....  ..++..+++|..+++ ++.+.+.    ++++|++++++..++++++||+||+||++|.++++++||++|+++
T Consensus       172 ~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~l  250 (476)
T 3i5t_A          172 NWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAI  250 (476)
T ss_dssp             GCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHH
T ss_pred             hccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHH
Confidence            554332  368888888888877 6544332    367888888754345899999999999999999999999999999


Q ss_pred             HHHhCCEEEEcccccCccccCCCccccc-ccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-------CccccC
Q 011669          284 IKKAGGLCIADEVQAGFARTGSHFWGFE-AHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNTF  354 (480)
Q Consensus       284 ~~~~gillI~DEv~tgfgr~G~~~~~~~-~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-------~~~~t~  354 (480)
                      |++||++||+||||+||||+| .+|+++ ++++.||++||||++++| +|+|++++++++++.+...       .+++||
T Consensus       251 c~~~gillI~DEv~~g~gr~G-~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~  329 (476)
T 3i5t_A          251 CEKHDILYISDEVVTGFGRCG-EWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTY  329 (476)
T ss_dssp             HHHTTCEEEEECTTTTTTTTS-SSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred             HHHcCCEEEEEecccCCcccc-CceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence            999999999999999999999 788888 999999999999999999 9999999999999988764       577999


Q ss_pred             CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHH---HHHH
Q 011669          355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA---ETLY  431 (480)
Q Consensus       355 ~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~---~~~~  431 (480)
                      ++||++|+|++++|+.++++++.++++++++++++.|+++. +++.+..+++.|+|+++++..+..++.+...   ....
T Consensus       330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~  408 (476)
T 3i5t_A          330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR-DLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLK  408 (476)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceeEEEEecCccccccccchhHHHHH
Confidence            99999999999999999888999999999999999999764 6788999999999999999765433333221   3567


Q ss_pred             HHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          432 IMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       432 ~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.+.|+++||++.+.+   +++||+||+++|+++|++++++|++++++
T Consensus       409 ~~~~l~~~Gv~v~~~g---~~iRi~p~l~~t~e~i~~~l~~l~~~l~~  453 (476)
T 3i5t_A          409 IDERCFELGLIVRPLG---DLCVISPPLIISRAQIDEMVAIMRQAITE  453 (476)
T ss_dssp             HHHHHHHTTEECEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEEecC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            8889999999999864   89999999999999999999999998864

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=100.00  E-value=1.2e-67  Score=549.10  Aligned_cols=414  Identities=26%  Similarity=0.420  Sum_probs=352.9

Q ss_pred             HHHHHHHHhhhcCCccccc----cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--
Q 011669           60 ADEILAKRKTFLSPSLFHL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--  133 (480)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--  133 (480)
                      ..++.++.++++++.....    ...|+++++|+|+|+||.|||+||||++|+++++|||+||+|++|+.+|++++.+  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~   91 (472)
T 3hmu_A           12 TAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYN   91 (472)
T ss_dssp             HHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCC
T ss_pred             HHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence            5677788888876654321    1358999999999999999999999999999999999999999999999998762  


Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccC
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQ  207 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~  207 (480)
                      ....|+++...+|+++|++.+|.+.++|+|+|||+|||+.|+|+++.+      +++++||+++++|||++.+++++++.
T Consensus        92 ~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~  171 (472)
T 3hmu_A           92 TFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGM  171 (472)
T ss_dssp             SSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCC
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCC
Confidence            233577899999999999999887899999999999999999999987      47889999999999999999999886


Q ss_pred             CCccccc-cCCCeeEecCCCCcC-CCCCCChH----HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHH
Q 011669          208 SNWKFNV-VQTGVHHALNPDPYR-GVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVY  281 (480)
Q Consensus       208 ~~~~~~~-~~~g~~~~~~p~~~~-~~~~~d~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~  281 (480)
                      +.++..+ ...++..++.|..|+ +++ .|.+    .++++|++++++..++++++||+||+||++|.++++++||++|+
T Consensus       172 ~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~  250 (472)
T 3hmu_A          172 AGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQ  250 (472)
T ss_dssp             HHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHH
T ss_pred             hhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHH
Confidence            5443221 335777888776555 222 2322    23677888887544458999999999999999999999999999


Q ss_pred             HHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC--CccccCCCcH
Q 011669          282 KSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR--NYFNTFGGNP  358 (480)
Q Consensus       282 ~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~--~~~~t~~~~~  358 (480)
                      ++|++||++||+||||+||||+| .+|+++++++.||++||||++++| +|+|++++++++++.+...  .+++||++||
T Consensus       251 ~l~~~~gillI~DEv~~gfgr~G-~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np  329 (472)
T 3hmu_A          251 RICDKYDILLIADEVICGFGRTG-NWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHP  329 (472)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCH
T ss_pred             HHHHHcCCEEEEEccccCCcccC-ccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCH
Confidence            99999999999999999999999 788889999999999999999987 8999999999999988433  5778999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC----HHHHHHHH
Q 011669          359 VCTAAGHAVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA----KAETLYIM  433 (480)
Q Consensus       359 ~~~aaa~a~L~~i~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~----~~~~~~~~  433 (480)
                      ++|+|++++|+.++++++.++++ +++++++++|+++. +++.+..+++.|+|+++++..+..++.+.    ......+.
T Consensus       330 ~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  408 (472)
T 3hmu_A          330 VAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALT-DHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICR  408 (472)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGG-GSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHH
Confidence            99999999999998889999999 99999999998874 57889999999999999997543333221    23456788


Q ss_pred             HHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          434 DKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       434 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.|+++||++.+++   +++||+||+++|+++|++++++|++++++
T Consensus       409 ~~l~~~Gv~v~~~g---~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  451 (472)
T 3hmu_A          409 ERCFANNLIMRHVG---DRMIISPPLVITPAEIDEMFVRIRKSLDE  451 (472)
T ss_dssp             HHHHHTTBCCEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCcEEEecC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999875   89999999999999999999999998864

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=100.00  E-value=7.7e-65  Score=526.02  Aligned_cols=419  Identities=31%  Similarity=0.530  Sum_probs=361.5

Q ss_pred             CHHHHHHHHhhhcCCcccccc-CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 011669           59 SADEILAKRKTFLSPSLFHLY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~  137 (480)
                      ++++++++.++++++.+..+. ..|+++++|+|+||||.||++||||++|++++++||+||+|++|+.++++++.|....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~   87 (452)
T 3n5m_A            8 QTDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS   87 (452)
T ss_dssp             HHHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTT
T ss_pred             cHHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccc
Confidence            456788888899887433332 4689999999999999999999999999999999999999999999999987664445


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh---c---CCceEEEEcCCcccccccccccccCCCcc
Q 011669          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---T---GCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~---~---~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  211 (480)
                      +.++...+++++|++.++.+.+ |+|+|||+|||+.|+++++.+   +   ++++||+++++|||++.+++++++.+.++
T Consensus        88 ~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~  166 (452)
T 3n5m_A           88 QSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRR  166 (452)
T ss_dssp             SEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGT
T ss_pred             cCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhc
Confidence            7788999999999999987767 999999999999999999976   5   78899999999999999999998876554


Q ss_pred             ccccC--CCeeEecCCCCcCCCCCCCh----HHHHHHHHHHHHccCCCceEEEEEccc-CCCCcceeCCCChHHHHHHHH
Q 011669          212 FNVVQ--TGVHHALNPDPYRGVFGADG----EMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSI  284 (480)
Q Consensus       212 ~~~~~--~g~~~~~~p~~~~~~~~~d~----~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~  284 (480)
                      .....  .++..++.|+.++.+++++.    ..++++|+++++...++++++||+||+ || +|.++++++|+++|+++|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~  245 (452)
T 3n5m_A          167 YQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETC  245 (452)
T ss_dssp             TTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHH
T ss_pred             cccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHH
Confidence            43322  57788888888888886432    224678888887323358999999999 89 999999999999999999


Q ss_pred             HHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC------CCccccCCCc
Q 011669          285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR------RNYFNTFGGN  357 (480)
Q Consensus       285 ~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~------~~~~~t~~~~  357 (480)
                      ++||++||+||||+||||+| .+++++.+++.||++||||++++| +|+||+++++++++.+..      ..+++||++|
T Consensus       246 ~~~~~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~  324 (452)
T 3n5m_A          246 QKHGALLISDEVICGFGRTG-KAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGN  324 (452)
T ss_dssp             HHHTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTC
T ss_pred             HHcCCEEEEecchhCCCccc-ccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCC
Confidence            99999999999999999999 678889999999999999999999 999999999999998853      2367899999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC-HHHHHHHHHHH
Q 011669          358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA-KAETLYIMDKM  436 (480)
Q Consensus       358 ~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~-~~~~~~~~~~l  436 (480)
                      |+++++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++..+..+..+. ......+.+.|
T Consensus       325 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l  404 (452)
T 3n5m_A          325 PAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC  404 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH
Confidence            99999999999998888899999999999999999998888889999999999999997654333222 23456788999


Q ss_pred             HHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          437 KEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       437 ~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      +++||++.+++.+    ++++||+||+++|+++|++++++|+++++++
T Consensus       405 ~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  452 (452)
T 3n5m_A          405 KEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI  452 (452)
T ss_dssp             HHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence            9999999987632    5899999999999999999999999998764

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=100.00  E-value=9e-67  Score=571.35  Aligned_cols=413  Identities=19%  Similarity=0.239  Sum_probs=336.2

Q ss_pred             HHHHhhhcCCcccccc----CCCeEEEeeecc--EEEeCCCC----EEEeccCCcccccCCCC-CHHHHHHHHHHHHhcc
Q 011669           64 LAKRKTFLSPSLFHLY----SKPLNVVDGKMQ--YLFDENGR----RYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQ  132 (480)
Q Consensus        64 ~~~~~~~~~~~~~~~~----~~p~~~~~g~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~  132 (480)
                      .++..+++++......    ..|++|++|+|.  ||||.|||    +|||+++|++++++||+ ||+|++|+.+|++++.
T Consensus       335 ~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~  414 (831)
T 4a0g_A          335 AKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFG  414 (831)
T ss_dssp             HHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcc
Confidence            3445667665443221    248899999995  99999999    99999999999999999 9999999999999998


Q ss_pred             cccc-ccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-Hhhc--------------CCceEEEEcCCcc
Q 011669          133 HSTV-LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMA-RLYT--------------GCNDIISLRNAYH  195 (480)
Q Consensus       133 ~~~~-~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~a-r~~~--------------~~~~ii~~~~~yh  195 (480)
                      |... .+.++...+|+++|++.+|.+ +++|||+||||||||.|||+| |.|+              ++.+||+++++||
T Consensus       415 h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syH  494 (831)
T 4a0g_A          415 HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYH  494 (831)
T ss_dssp             SCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCC
T ss_pred             cccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcc
Confidence            8643 456899999999999999865 789999999999999999999 5553              4678999999999


Q ss_pred             cccccccccccCCCcccc------------ccC------CCeeEecCCCCcCCCCCC-----C--------------hHH
Q 011669          196 GNAAGTMGATAQSNWKFN------------VVQ------TGVHHALNPDPYRGVFGA-----D--------------GEM  238 (480)
Q Consensus       196 G~~~~~~~~~~~~~~~~~------------~~~------~g~~~~~~p~~~~~~~~~-----d--------------~~~  238 (480)
                      |.+.+++++++.+.++..            .+.      .++.++++|+.++....+     +              ...
T Consensus       495 G~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (831)
T 4a0g_A          495 GDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARI  574 (831)
T ss_dssp             CSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHH
T ss_pred             cCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHH
Confidence            999999999986544330            000      244556677666543111     1              123


Q ss_pred             HHHHHHHHHHc----cCCCceEEEEEccc-CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc
Q 011669          239 YAKDVQDLIDF----GTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH  313 (480)
Q Consensus       239 ~~~~le~~i~~----~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~  313 (480)
                      +.+.|++.|+.    ..++++++||+||+ ||+||+++++++||++|+++|++||++||+||||+||||+| ++|+++++
T Consensus       575 ~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG-~~fa~e~~  653 (831)
T 4a0g_A          575 YSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG-VETTTELL  653 (831)
T ss_dssp             HHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTS-BSSTHHHH
T ss_pred             HHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCC-CchhhHhc
Confidence            45778887763    23568999999997 99999999999999999999999999999999999999999 78899999


Q ss_pred             CCCcceeeeccccccC-ccccccccCHHHHHhhcCC------CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 011669          314 GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY  386 (480)
Q Consensus       314 ~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~------~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~  386 (480)
                      |+.||++||||++++| +|+|++++++++++.+...      .|++||++||++|++++++|++++++++.+++++++++
T Consensus       654 gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~  733 (831)
T 4a0g_A          654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKT  733 (831)
T ss_dssp             SSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSB
T ss_pred             CCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999999 7999999999999988753      37899999999999999999999888888888776666


Q ss_pred             HHH----HHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCC
Q 011669          387 LKE----RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT  462 (480)
Q Consensus       387 l~~----~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t  462 (480)
                      +++    .+.+...+++.+.++++.|+|++++++.+.....+.......+.+.|+++||++.+.   ++.|||+||+++|
T Consensus       734 l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~---g~~lrl~pp~~~t  810 (831)
T 4a0g_A          734 LRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL---GNVIYLMCGPCTS  810 (831)
T ss_dssp             BCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB---TTEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec---CCEEEEECCCCCC
Confidence            543    454555678999999999999999998653222223345677889999999999876   4899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhC
Q 011669          463 KEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~~~  480 (480)
                      ++|||+++++|+++++++
T Consensus       811 ~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          811 PEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             HHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998764

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=100.00  E-value=1.1e-64  Score=526.14  Aligned_cols=416  Identities=29%  Similarity=0.433  Sum_probs=355.1

Q ss_pred             HHHHHHhhhcCCccccc------cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--
Q 011669           62 EILAKRKTFLSPSLFHL------YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--  133 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~~------~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--  133 (480)
                      ++.+..++++++.....      .+.|+++++|+|+|+||.||++||||++|++++++||+||+|++|+.+|++++.+  
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~   87 (460)
T 3gju_A            8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYH   87 (460)
T ss_dssp             CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence            46666777776654321      1245999999999999999999999999999999999999999999999998753  


Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccC
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQ  207 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~  207 (480)
                      ....++++...+|+++|++.++.+.++|+|+|||+|||+.|+++++.+      +++++||+++++|||++.+++++++.
T Consensus        88 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~  167 (460)
T 3gju_A           88 AYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGL  167 (460)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred             cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCC
Confidence            223567889999999999999878889999999999999999999987      57899999999999999999999887


Q ss_pred             CCccccccC--CCeeEecCCCCcCCCC-CCChH----HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHH
Q 011669          208 SNWKFNVVQ--TGVHHALNPDPYRGVF-GADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAV  280 (480)
Q Consensus       208 ~~~~~~~~~--~g~~~~~~p~~~~~~~-~~d~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l  280 (480)
                      +.++..+..  .++..++.|..|+++. +.+.+    .++++|++++++..++++++||+||+||++|.++++++|+++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l  247 (460)
T 3gju_A          168 DLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKI  247 (460)
T ss_dssp             GGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred             cccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence            665544332  5788888877776542 22322    2357888888754345899999999999999999999999999


Q ss_pred             HHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhc-------CCCccc
Q 011669          281 YKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT-------RRNYFN  352 (480)
Q Consensus       281 ~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~-------~~~~~~  352 (480)
                      +++|++||++||+||||+||||+| ++++++++++.||++||||++++| +|+||+++++++++.+.       ...+.+
T Consensus       248 ~~l~~~~~~llI~DEv~~g~gr~g-~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~  326 (460)
T 3gju_A          248 QAVLKKYDVLLVADEVVTGFGRLG-TMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW  326 (460)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCC
T ss_pred             HHHHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCC
Confidence            999999999999999999999999 788888899999999999999988 79999999999999884       346789


Q ss_pred             cCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCC---CHHHH
Q 011669          353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP---AKAET  429 (480)
Q Consensus       353 t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~---~~~~~  429 (480)
                      ||++||+++++++++|+.++++++.+++++++++++++|.+...+++.+..+++.|+|+++++..+..+..+   .....
T Consensus       327 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  406 (460)
T 3gju_A          327 TYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIG  406 (460)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHH
Confidence            999999999999999999988899999999999999999888888888999999999999999765433222   22245


Q ss_pred             HHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          430 LYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       430 ~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..+.+.|+++||++.+++ .++++||+||+++|++++++++++|++++++
T Consensus       407 ~~~~~~l~~~Gv~v~~~~-~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  455 (460)
T 3gju_A          407 PQVATALAASGVIGRAMP-QGDILGFAPPLCLTREQADIVVSKTADAVKS  455 (460)
T ss_dssp             HHHHHHHHHTTEECEECS-SSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCeEEecCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            678889999999999876 4589999999999999999999999998864

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=100.00  E-value=1e-64  Score=525.27  Aligned_cols=404  Identities=23%  Similarity=0.316  Sum_probs=345.3

Q ss_pred             CCCHHHHHHHHhhhcCCccccc---cCCCeEEEeeeccEEEeC-CCC--EEEeccCCcccccCCCCCHHHHHHHHHHHHh
Q 011669           57 GPSADEILAKRKTFLSPSLFHL---YSKPLNVVDGKMQYLFDE-NGR--RYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (480)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~g~G~~l~d~-dG~--~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~  130 (480)
                      +.+.+++++++++++++.....   ...|+++++|+|+|+||. |||  +||||++|++++++||+||+|++|+.+|+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~  106 (457)
T 3tfu_A           27 GLTPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV  106 (457)
T ss_dssp             CCCHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHh
Confidence            3556788999999988765432   345899999999999999 999  9999999999999999999999999999999


Q ss_pred             ccccc-cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccc
Q 011669          131 IQHST-VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMG  203 (480)
Q Consensus       131 ~~~~~-~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~  203 (480)
                      +.|.+ ..++++...+|+++|++.++.+.++|+|+|||+|||+.|+|+++.+      +++++||+++++|||++.++++
T Consensus       107 ~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~  186 (457)
T 3tfu_A          107 MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMS  186 (457)
T ss_dssp             CSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHT
T ss_pred             ccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhc
Confidence            87765 4577899999999999999877889999999999999999999987      7888999999999999999999


Q ss_pred             ccc-CCCccccccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc-cCCCCcceeCCCChHHH
Q 011669          204 ATA-QSNWKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPA  279 (480)
Q Consensus       204 ~~~-~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~  279 (480)
                      +++ .+.++.....  .++..++.|..   .+   ....+++|++++++. ++++++||+|| +||++|.++++++|+++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~---~~~d~~~le~~l~~~-~~~~aavi~ep~~~~~~G~~~~~~~~l~~  259 (457)
T 3tfu_A          187 ICDPHGGMHSLWTDVLAAQVFAPQVPR---DY---DPAYSAAFEAQLAQH-AGELAAVVVEPVVQGAGGMRFHDPRYLHD  259 (457)
T ss_dssp             TSCCC----------CCCCEEECCCCS---SC---CHHHHHHHHHHHHHH-GGGEEEEEECSSEECTTTCEECCTHHHHH
T ss_pred             ccCCcccccccccCCCCCceEecCCCc---cc---CHHHHHHHHHHHHhC-CCCEEEEEEeCCCcCCCCcccCCHHHHHH
Confidence            864 3333322221  45556655432   11   122367888888743 34799999999 99999999999999999


Q ss_pred             HHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhc---CC--Ccccc
Q 011669          280 VYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT---RR--NYFNT  353 (480)
Q Consensus       280 l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~---~~--~~~~t  353 (480)
                      |+++|++||++||+||||+||||+| .+++++++++.||++||||++++| +|+||+++++++++.+.   ..  .+++|
T Consensus       260 l~~l~~~~gillI~DEv~~g~gr~G-~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t  338 (457)
T 3tfu_A          260 LRDICRRYEVLLIFDEIATGFGRTG-ALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPT  338 (457)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCT
T ss_pred             HHHHHHHcCCEEEEEcCccCCcccc-chhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecC
Confidence            9999999999999999999999999 788889999999999999999998 69999999999999884   33  57899


Q ss_pred             CCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHH
Q 011669          354 FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM  433 (480)
Q Consensus       354 ~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~  433 (480)
                      |++||++|++++++|+.++++++.+++++++++++++|+++. +++.+..+++.|+|+++++....        ....+.
T Consensus       339 ~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~--------~~~~~~  409 (457)
T 3tfu_A          339 FMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPV--------DLAVAT  409 (457)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCC--------CHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcc--------cHHHHH
Confidence            999999999999999999888999999999999999999885 67788899999999999985421        146788


Q ss_pred             HHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          434 DKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       434 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      +.|+++||++.+.   ++++||+||+++|++|+++++++|+++++++
T Consensus       410 ~~l~~~Gv~v~~~---~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~  453 (457)
T 3tfu_A          410 PAALDRGVWLRPF---RNLVYAMPPYICTPAEITQITSAMVEVARLV  453 (457)
T ss_dssp             HHHHHTTEECCCB---TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999875   4799999999999999999999999998753

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=100.00  E-value=1.4e-64  Score=525.03  Aligned_cols=413  Identities=25%  Similarity=0.407  Sum_probs=338.8

Q ss_pred             HHHHHHhhhcCCccccc----cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--cc
Q 011669           62 EILAKRKTFLSPSLFHL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--ST  135 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--~~  135 (480)
                      ++.++.++++++.....    ...|+++++|+|+|+||.||++||||++|++++++||+||+|++|+.++++++.+  ..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~   88 (459)
T 4a6r_A            9 QWRELDAAHHLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTF   88 (459)
T ss_dssp             -------------------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTT
T ss_pred             HHHHHhhhhccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccc
Confidence            45556666665543221    1358999999999999999999999999999999999999999999999998752  23


Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCC
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      ..++++...+++++|++.++.+.++|+|+|||+|||+.|+++++.+      +++++||+++++|||++.+++++++.+.
T Consensus        89 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~  168 (459)
T 4a6r_A           89 FKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKY  168 (459)
T ss_dssp             SSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTT
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChh
Confidence            3577899999999999999888899999999999999999999986      4789999999999999999999988776


Q ss_pred             cccccc--CCCeeEecCCCCcC-CCCCCChH----HHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHH
Q 011669          210 WKFNVV--QTGVHHALNPDPYR-GVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (480)
Q Consensus       210 ~~~~~~--~~g~~~~~~p~~~~-~~~~~d~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  282 (480)
                      ++..+.  ..++..++.|..|+ +.+ .|.+    .++++|+++++...++++++|++||+++++|.++++++||++|++
T Consensus       169 ~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~  247 (459)
T 4a6r_A          169 MHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIER  247 (459)
T ss_dssp             TC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             hccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence            654332  25777888776555 222 2322    235778888875434589999999999999999999999999999


Q ss_pred             HHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhc---CCCccccCCCcH
Q 011669          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT---RRNYFNTFGGNP  358 (480)
Q Consensus       283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~---~~~~~~t~~~~~  358 (480)
                      +|++||++||+||||+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+.   ...+++||++||
T Consensus       248 l~~~~~~llI~DEv~~g~gr~G-~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~  326 (459)
T 4a6r_A          248 ICRKYDVLLVADEVICGFGRTG-EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHP  326 (459)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCH
T ss_pred             HHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCH
Confidence            9999999999999999999999 678888899999999999999987 89999999999999887   455778999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCC---CCHHHHHHHHH
Q 011669          359 VCTAAGHAVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT---PAKAETLYIMD  434 (480)
Q Consensus       359 ~~~aaa~a~L~~i~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~---~~~~~~~~~~~  434 (480)
                      +++++++++|+.++++++.++++ ++++++++.|.+...+++.+..+++.|+|+++++..+..++.   +.......+.+
T Consensus       327 ~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (459)
T 4a6r_A          327 VCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRD  406 (459)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHH
Confidence            99999999999988889999999 999999999944445678899999999999999976543322   23344677889


Q ss_pred             HHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          435 KMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       435 ~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .|+++||++.+++   +++||+||+++|++++++++++|++++++
T Consensus       407 ~l~~~Gv~v~~~g---~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  448 (459)
T 4a6r_A          407 IFFRNNLIMRACG---DHIVSAPPLVMTRAEVDEMLAVAERCLEE  448 (459)
T ss_dssp             HHHHTTEECEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCeEEecCC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999875   79999999999999999999999998864

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=100.00  E-value=6.3e-64  Score=518.64  Aligned_cols=411  Identities=27%  Similarity=0.420  Sum_probs=333.6

Q ss_pred             HHHHHHhhhcCCcccc---ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc-ccc
Q 011669           62 EILAKRKTFLSPSLFH---LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVL  137 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~---~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~  137 (480)
                      ++.++.++++++....   +...|+++++|+|+|+||.||++||||++|++++++||+||+|++|+.++++++.|. ...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~   83 (448)
T 3dod_A            4 DLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLG   83 (448)
T ss_dssp             HHHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSS
T ss_pred             HHHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc
Confidence            5677788888754432   224689999999999999999999999999999999999999999999999987664 345


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh---cC---CceEEEEcCCcccccccccccccCCCcc
Q 011669          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TG---CNDIISLRNAYHGNAAGTMGATAQSNWK  211 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~---~~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~  211 (480)
                      +.++...+++++|++.++.+.++|+|+|||+|||+.|+++++.+   +|   +++||+++++|||++..++++++.+.++
T Consensus        84 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~  163 (448)
T 3dod_A           84 MTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFH  163 (448)
T ss_dssp             SEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC--------------------
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcccc
Confidence            67888999999999999877899999999999999999999987   77   8999999999999999999998866555


Q ss_pred             ccccC--CCeeEecCCCCcCCCCCCChHH----HHHHHHHHHHccCCCceEEEEEcccC-CCCcceeCCCChHHHHHHHH
Q 011669          212 FNVVQ--TGVHHALNPDPYRGVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQ-GVGGIIELAPGYLPAVYKSI  284 (480)
Q Consensus       212 ~~~~~--~g~~~~~~p~~~~~~~~~d~~~----~~~~le~~i~~~~~~~~a~vi~epi~-~~~G~~~~~~~~l~~l~~l~  284 (480)
                      .....  .++..++.++.|+++ +.+...    .+++|+++++.. ++++++||+||++ +++|.+.++++|+++|+++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~-~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~  241 (448)
T 3dod_A          164 HVYGPLMFESYKAPIPYVYRSE-SGDPDECRDQCLRELAQLLEEH-HEEIAALSIESMVQGASGMIVMPEGYLAGVRELC  241 (448)
T ss_dssp             ---------CEEECCCCCTTSS-SCCHHHHHHHHHHHHHHHHHHH-GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred             ccccCCCCCceEeCCCccccCC-ccchhhhhHHHHHHHHHHHHhC-CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence            44322  567788888888776 433222    367788888632 3479999999998 99999999999999999999


Q ss_pred             HHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcC-------CCccccCCC
Q 011669          285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTFGG  356 (480)
Q Consensus       285 ~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~-------~~~~~t~~~  356 (480)
                      ++||++||+||||+||||+| .+++++.+++.||++||||++++| +|+||+++++++++.+..       ..+++||++
T Consensus       242 ~~~~~~lI~DEv~~g~g~~g-~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~  320 (448)
T 3dod_A          242 TTYDVLMIVDEVATGFGRTG-KMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTG  320 (448)
T ss_dssp             HHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTT
T ss_pred             HHhCCEEEEeccccCCCccc-chhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCc
Confidence            99999999999999999999 677888999999999999999999 599999999999999876       557899999


Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHH---HHHHHH
Q 011669          357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA---ETLYIM  433 (480)
Q Consensus       357 ~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~---~~~~~~  433 (480)
                      ||+++++++++|+.++++++.++++++++++++.|++ ..+++.+..+++.|+++++++..+..+..+...   ....+.
T Consensus       321 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (448)
T 3dod_A          321 NQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVS  399 (448)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHH
Confidence            9999999999999988888999999999999999999 667788889999999999999765433222211   136788


Q ss_pred             HHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          434 DKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       434 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.|+++||++.+++   +++||+|++++|+++|++++++|++++++
T Consensus       400 ~~l~~~Gv~~~~~~---~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  442 (448)
T 3dod_A          400 LKMRELGMLTRPLG---DVIAFLPPLASTAEELSEMVAIMKQAIHE  442 (448)
T ss_dssp             HHHHHTTEECCEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCcEEeccC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            89999999998874   79999999999999999999999998864

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=100.00  E-value=2.8e-60  Score=488.95  Aligned_cols=418  Identities=33%  Similarity=0.527  Sum_probs=351.2

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 011669           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY  138 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~  138 (480)
                      ++.+++++.++++.+....+  .|+++.+|+|+++||.||++||||.++.++.++||+||+|++|+.+++++..+....|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~   82 (433)
T 1zod_A            5 DDATFWRNARHHLVRYGGTF--EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEM   82 (433)
T ss_dssp             TCHHHHHHHHHHCCCCSSCC--CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTC
T ss_pred             hhHHHHHHHHHhhccccccc--CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccccccc
Confidence            45778888888876643322  5899999999999999999999999999999999999999999999998875544567


Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc-CC
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QT  217 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-~~  217 (480)
                      +++...+++++|++.++.+.++|+|++||+||++.|+++++.++++++||+++++|||.+..++..++...+....+ ..
T Consensus        83 ~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  162 (433)
T 1zod_A           83 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAV  162 (433)
T ss_dssp             CCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCT
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCC
Confidence            78889999999999998778899999999999999999988777888999999999999999888776442221111 25


Q ss_pred             CeeEecCCCCcCCCCCCC----hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          218 GVHHALNPDPYRGVFGAD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       218 g~~~~~~p~~~~~~~~~d----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                      ++..++.|..++.+|+++    ....+++|++++++..++++++|++||+|+++|.++++++++++|+++|++||++||+
T Consensus       163 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~  242 (433)
T 1zod_A          163 GSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLIL  242 (433)
T ss_dssp             TEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEE
T ss_pred             CceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Confidence            788888887777666531    1234678888887432357899999999999998889999999999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHh
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVI  371 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i  371 (480)
                      ||||+|||++| .+++++.+++.||++||||++++|+|+||+++++++++.+....  +.+|+++|+++++++.++|+.+
T Consensus       243 DEv~~~~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~  321 (433)
T 1zod_A          243 DEAQTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV  321 (433)
T ss_dssp             ECTTTTTTTTS-SSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred             eccccCCCcCc-hHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            99999999998 66677778999999999999999999999999999998886533  4489999999999999999998


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCC-
Q 011669          372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG-  450 (480)
Q Consensus       372 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-  450 (480)
                      +++++.+++++++++++++|+++..+++.+..+++.|+|+++++.....+..++......+.+.|+++||++.+++.++ 
T Consensus       322 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~  401 (433)
T 1zod_A          322 QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM  401 (433)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTS
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCC
Confidence            8888999999999999999999877778778889999999999864321111212235678888999999999987666 


Q ss_pred             -CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          451 -NVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       451 -~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       +++||+|++.+|++++++++++|++++++
T Consensus       402 ~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~  431 (433)
T 1zod_A          402 GGVFRIAPPLTVSEDEIDLGLSLLGQAIER  431 (433)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence             89999999999999999999999998865

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.7e-60  Score=490.81  Aligned_cols=408  Identities=26%  Similarity=0.362  Sum_probs=336.0

Q ss_pred             CCCHHHHHHHHhhhcCCccc---ccc-----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHH
Q 011669           57 GPSADEILAKRKTFLSPSLF---HLY-----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI  128 (480)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~---~~~-----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~  128 (480)
                      .|++.+++++.+++++.+..   ..+     ..|+++++|+|+|+||.|||+||||++|++++++||+||+|++|+.+++
T Consensus         5 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~   84 (434)
T 3l44_A            5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAA   84 (434)
T ss_dssp             CHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHH
Confidence            36788999999999876541   111     4699999999999999999999999999999999999999999999999


Q ss_pred             HhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC
Q 011669          129 KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS  208 (480)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~  208 (480)
                      .+..  ...|+++...+|+++|++.++ +.++|+|+|||+||++.|+++++.++++++||+++++|||++..++..++.+
T Consensus        85 ~~~~--~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~  161 (434)
T 3l44_A           85 ENGV--LYGTPTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSG  161 (434)
T ss_dssp             HHCS--CCSSCCHHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC----
T ss_pred             HhCc--CCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCc
Confidence            8852  235778999999999999998 5789999999999999999999998899999999999999999998887654


Q ss_pred             CccccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh
Q 011669          209 NWKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (480)
Q Consensus       209 ~~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  287 (480)
                      ......+. .++.....+.....+++ |    .++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  235 (434)
T 3l44_A          162 PSTLGTPDSAGVPQSIAQEVITVPFN-N----VETLKEALDKW-GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEA  235 (434)
T ss_dssp             ---CCCBSSTTCCHHHHTTEEEECTT-C----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTT
T ss_pred             ccccCCCCcCCCCCcCCCceEecCcc-c----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHc
Confidence            33222221 11110000111111222 3    67888888643 247999999999999999999999999999999999


Q ss_pred             CCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---CCccccCCCcHHHHHHH
Q 011669          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAG  364 (480)
Q Consensus       288 gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa  364 (480)
                      |++||+||||+|| |+| .+++++++++.||++||||++++|+|+||+++++++++.+..   ..+++||++|+++++++
T Consensus       236 ~illI~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa  313 (434)
T 3l44_A          236 GALVIYDEVITAF-RFM-YGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASG  313 (434)
T ss_dssp             TCEEEEECTTTTT-TSS-SSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHH
T ss_pred             CCEEEEeccccce-ecc-ccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHH
Confidence            9999999999999 998 677788889999999999999999999999999999998875   34678999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHc
Q 011669          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEM  439 (480)
Q Consensus       365 ~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~  439 (480)
                      +++|+.++++++.++++++++++++.|+++...++.+..+++.|+|+++++......     ..++......+.+.|+++
T Consensus       314 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  393 (434)
T 3l44_A          314 IACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE  393 (434)
T ss_dssp             HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC
Confidence            999999888889999999999999999999888888889999999999998543210     013344557788999999


Q ss_pred             CceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          440 GVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       440 Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||++.+++  .+.+|++  +++|++++++++++|++++++
T Consensus       394 Gv~v~~~~--~~~~rl~--~~~t~e~i~~~l~~l~~~l~~  429 (434)
T 3l44_A          394 GVNLAPSK--YEAWFLT--TEHTKEDIEYTIEAVGRAFAA  429 (434)
T ss_dssp             TEECCSST--TCCEECC--TTCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEeecC--CCcEEEe--cccCHHHHHHHHHHHHHHHHH
Confidence            99999875  3567874  899999999999999998864

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=100.00  E-value=4.8e-60  Score=488.11  Aligned_cols=412  Identities=30%  Similarity=0.456  Sum_probs=347.5

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-cccC
Q 011669           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VLYL  139 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~~~  139 (480)
                      .+++++.++++.++...  ..|+++++|+|+|+||.||++||||.++.+++++||+||+|.+|+.+++.+..+.. ..++
T Consensus         7 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~   84 (439)
T 3dxv_A            7 ALYDRDGAAIGNLQKLR--FFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSAS   84 (439)
T ss_dssp             CHHHHHHHHBCGGGCCC--SSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSE
T ss_pred             HHHHHHHHHhccCccCC--CCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccC
Confidence            46788888877665443  25899999999999999999999999999999999999999999999998876543 4567


Q ss_pred             ChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC--ccccccC
Q 011669          140 NHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN--WKFNVVQ  216 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~--~~~~~~~  216 (480)
                      ++...+++++|++.++.+. ++++|++||+||++.|+++++.++++++||+++++|||.+..++.+++...  ++.....
T Consensus        85 ~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  164 (439)
T 3dxv_A           85 NAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADG  164 (439)
T ss_dssp             EHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------C
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCC
Confidence            8899999999999998767 799999999999999999998888999999999999999999988877543  3332221


Q ss_pred             --CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          217 --TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       217 --~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                        .++..+++++.+.+.   +.+..+++|+++++....+++++|++||+++++|.+.++++|+++|+++|++||++||+|
T Consensus       165 ~~~~~~~~~~~~~~~~~---~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D  241 (439)
T 3dxv_A          165 LILLPYPDPYRPYRNDP---TGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD  241 (439)
T ss_dssp             EEEECCCCSSSCBTTBT---TSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCcEEcCCCcccccc---cHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence              233334433322111   111247888888853334589999999999999999999999999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD  374 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~  374 (480)
                      |+|+|||++| .++.++.+++.||++||||++++|+|+||+++++++++.+....+..|+ +||+++++++++|+.++++
T Consensus       242 E~~~g~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~  319 (439)
T 3dxv_A          242 EVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRD  319 (439)
T ss_dssp             CTTTCTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCcCc-hhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhc
Confidence            9999999999 6777888899999999999999999999999999999988877778999 9999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEE
Q 011669          375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFR  454 (480)
Q Consensus       375 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR  454 (480)
                      ++.++++++++++++.|+++...++.+..+++.|+|+++++..+..+..|.......+.+.|+++||++.+++.+++++|
T Consensus       320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR  399 (439)
T 3dxv_A          320 DLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLE  399 (439)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEE
Confidence            89999999999999999999888888899999999999999765444445556677889999999999999876678999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          455 ITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       455 i~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |+|++++|++++++++++|++++++
T Consensus       400 i~~~~~~t~e~i~~~l~~l~~~l~~  424 (439)
T 3dxv_A          400 FTPPLTITETDIHKALDLLDRAFSE  424 (439)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999875

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=100.00  E-value=1.1e-59  Score=484.77  Aligned_cols=391  Identities=27%  Similarity=0.467  Sum_probs=320.0

Q ss_pred             CCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 011669           58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~  137 (480)
                      +++++++++.++++.+.   +.+.|+++++|+|+|+||.||++||||.+|++.+++||+||+|++|+.+++++..+.+..
T Consensus        27 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~  103 (433)
T 1z7d_A           27 KTPEDYINNELKYGAHN---YDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA  103 (433)
T ss_dssp             CCHHHHHHHHHHHBCCC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTT
T ss_pred             ccHHHHHHHHHHhcccc---cCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCC
Confidence            45778888888887654   334589999999999999999999999999999999999999999999999987665445


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh--------cCCceEEEEcCCcccccccccccccCCC
Q 011669          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      +.++...+++++|++.++  .++|+|+|||+|||+.|+++++.+        +++++||+++++|||++..++.+++.+.
T Consensus       104 ~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~  181 (433)
T 1z7d_A          104 FFSVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKK  181 (433)
T ss_dssp             SEEHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC----------------
T ss_pred             cCCHHHHHHHHHHHhhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcc
Confidence            677889999999999984  689999999999999999998854        2458999999999999998887776433


Q ss_pred             ccccccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh
Q 011669          210 WKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (480)
Q Consensus       210 ~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  287 (480)
                      ++....+  .++..+++         +|    +++|+++++   .+++++|++||+++++|.++++++++++|+++|++|
T Consensus       182 ~~~~~~p~~~~v~~~~~---------~d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  245 (433)
T 1z7d_A          182 CTSNFGPFAPQFSKVPY---------DD----LEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY  245 (433)
T ss_dssp             ----------CEEEECT---------TC----HHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred             ccccCCCCCCCeEEeCC---------CC----HHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence            3222111  24444432         13    678888885   247899999999999999889999999999999999


Q ss_pred             CCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHH
Q 011669          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA  366 (480)
Q Consensus       288 gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a  366 (480)
                      |++||+||||+||||+| .+++++.+++.||++||||++++| +|+||+++++++++.+....+..||++||++++++.+
T Consensus       246 g~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a  324 (433)
T 1z7d_A          246 NVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVE  324 (433)
T ss_dssp             TCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHH
T ss_pred             CCEEEEecCccCCCcCC-cchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHH
Confidence            99999999999999999 677788889999999999999999 9999999999999988876678999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc
Q 011669          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG  446 (480)
Q Consensus       367 ~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  446 (480)
                      +|+.++++++.+++++++++++++|+++...++.+..+++.|+|+++++....       .....+.+.|+++||++.++
T Consensus       325 al~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-------~~~~~~~~~l~~~Gv~v~~~  397 (433)
T 1z7d_A          325 ALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-------VNVLDICLKLKENGLITRDV  397 (433)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-------CCHHHHHHHHHHTTEECCEE
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-------hHHHHHHHHHHHCCeEEecC
Confidence            99998878899999999999999999986677777888999999999985321       01457888999999999886


Q ss_pred             CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          447 GFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       447 ~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +  .+++||+||+.+|++|+++++++|++++++
T Consensus       398 ~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  428 (433)
T 1z7d_A          398 H--DKTIRLTPPLCITKEQLDECTEIIVKTVKF  428 (433)
T ss_dssp             T--TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             C--CCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence            4  579999999999999999999999998764

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=100.00  E-value=6.2e-60  Score=485.95  Aligned_cols=407  Identities=24%  Similarity=0.342  Sum_probs=326.9

Q ss_pred             CHHHHHHHHhhhcCCcccc---c----cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhc
Q 011669           59 SADEILAKRKTFLSPSLFH---L----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI  131 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~---~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~  131 (480)
                      ++.+++++.+++++.+...   .    ...|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~   85 (429)
T 4e77_A            6 KSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG   85 (429)
T ss_dssp             HHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC
Confidence            6788999999998765321   1    23699999999999999999999999999999999999999999999999886


Q ss_pred             cccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcc
Q 011669          132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (480)
Q Consensus       132 ~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  211 (480)
                      .+  ..|+++...+|+++|++.++ +.++|+|+|||+|||+.|+++++.++++++||+++++|||.+..++...+.....
T Consensus        86 ~~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  162 (429)
T 4e77_A           86 LS--FGAPTEMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALT  162 (429)
T ss_dssp             SC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC---------------
T ss_pred             cc--cCCCCHHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccc
Confidence            43  34678999999999999998 5789999999999999999999998999999999999999998777555433221


Q ss_pred             ccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669          212 FNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (480)
Q Consensus       212 ~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  290 (480)
                      ...+. .++.....+.....+++ |    .++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++||++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~l  236 (429)
T 4e77_A          163 LGQPNSPGVPTDFAKHTLTCTYN-D----LASVRQAFEQY-PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGAL  236 (429)
T ss_dssp             ---CCCTTSCGGGGTTEEEECTT-C----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCE
T ss_pred             cCCCCcCCCCCccCCceeecCCC-C----HHHHHHHHHhc-CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence            11111 12211111122222332 3    67888888753 347999999999999999999999999999999999999


Q ss_pred             EEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCC---CccccCCCcHHHHHHHHHH
Q 011669          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       291 lI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~---~~~~t~~~~~~~~aaa~a~  367 (480)
                      ||+||||+|| |+| .++.++.+++.||++||||++++|+|+||+++++++++.+...   .+++||++||++++++.++
T Consensus       237 li~DEv~~g~-r~g-~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aa  314 (429)
T 4e77_A          237 LIIDEVMTGF-RVA-LAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFAC  314 (429)
T ss_dssp             EEEEETTTBT-TTB-TTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHH
T ss_pred             EEEeccccCc-ccC-cchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHH
Confidence            9999999999 998 6777888999999999999999999999999999999988753   4678999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc------CCCCHHHHHHHHHHHHHcCc
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL------KTPAKAETLYIMDKMKEMGV  441 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv  441 (480)
                      |+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++......      ..++......+.+.|+++||
T Consensus       315 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi  394 (429)
T 4e77_A          315 LTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGV  394 (429)
T ss_dssp             HHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTE
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCe
Confidence            999888889999999999999999999888888889999999999998653210      11233455778899999999


Q ss_pred             eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ++.+++.  ..+|  +++.+|++|+++++++|+++++++
T Consensus       395 ~v~~~~~--~~~~--~~~~~t~e~i~~~l~~l~~~l~~~  429 (429)
T 4e77_A          395 YLAPSAF--EAGF--MSLAHSNEDIQKTVNAARRCFAKL  429 (429)
T ss_dssp             ECCSSTT--SCEE--CCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             EEeecCC--CCEE--EeccCCHHHHHHHHHHHHHHHHhC
Confidence            9998752  3344  468999999999999999998764

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=100.00  E-value=1.5e-59  Score=484.43  Aligned_cols=392  Identities=25%  Similarity=0.473  Sum_probs=333.4

Q ss_pred             CCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 011669           57 GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV  136 (480)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~  136 (480)
                      ++++++++++..+++.+.   +.+.|+++.+|+|+|+||.||++||||.+|++.+++||+||+|++|+.+++++..+.+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~  113 (439)
T 2oat_A           37 PPTSDDIFEREYKYGAHN---YHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSR  113 (439)
T ss_dssp             CCCHHHHHHHHHHHBCCC---CCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCT
T ss_pred             CCCHHHHHHHHHHhcccc---cCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccC
Confidence            466788888888887654   33468999999999999999999999999999999999999999999999998766544


Q ss_pred             ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh--------cCCceEEEEcCCcccccccccccccCC
Q 011669          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQS  208 (480)
Q Consensus       137 ~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~  208 (480)
                      .|.++...+++++|++.++  .++|+|++||+||++.|+++++.+        +++++||+++++|||++..++.+++.+
T Consensus       114 ~~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~  191 (439)
T 2oat_A          114 AFYNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDP  191 (439)
T ss_dssp             TSEESSHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCH
T ss_pred             ccCCHHHHHHHHHHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCCh
Confidence            5667788999999999984  688999999999999999998854        245899999999999998888776643


Q ss_pred             CccccccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH
Q 011669          209 NWKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK  286 (480)
Q Consensus       209 ~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~  286 (480)
                      .++....+  .++..++++         |    +++++++++   .+++++|++||+++++|.+.++++++++|+++|++
T Consensus       192 ~~~~~~~p~~~~v~~~~~~---------d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~  255 (439)
T 2oat_A          192 TSYDGFGPFMPGFDIIPYN---------D----LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR  255 (439)
T ss_dssp             HHHTTSCSCCTTEEEECSS---------C----HHHHHHHTT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred             hcccCCCCCCCCeEEeCCC---------C----HHHHHHHhC---CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHH
Confidence            22221111  344444322         3    678888885   24789999999999999988999999999999999


Q ss_pred             hCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHH
Q 011669          287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (480)
Q Consensus       287 ~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~  365 (480)
                      ||++||+||||+||||+| .+++++.+++.||++||||++++| +|+||+++++++++.+....+..||++||++++++.
T Consensus       256 ~gillI~DEv~~g~g~~g-~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~  334 (439)
T 2oat_A          256 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAI  334 (439)
T ss_dssp             TTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHH
T ss_pred             cCCEEEEeccccCCccCC-cchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHH
Confidence            999999999999999999 677788889999999999999999 999999999999998887777899999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK  445 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~  445 (480)
                      ++|+.++++++.+++++++++++++|+++  .++.+..+++.|+++++++..+..      .....+.+.|+++||++.+
T Consensus       335 aal~~~~~~~~~~~~~~~~~~l~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~~------~~~~~l~~~l~~~Gv~v~~  406 (439)
T 2oat_A          335 AALEVLEEENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETKD------WDAWKVCLRLRDNGLLAKP  406 (439)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHTTS--CTTTEEEEEEETTEEEEEECCCSS------CCHHHHHHHHHHTTEECCB
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHh--cCCCcEEEEeeeeEEEEEEecCcc------HHHHHHHHHHHHCCeEEec
Confidence            99999888889999999999999999887  466677789999999998854310      1145788889999999998


Q ss_pred             cCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          446 GGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       446 ~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ++  ++++||+||+.+|++|+++++++|+++++++
T Consensus       407 ~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  439 (439)
T 2oat_A          407 TH--GDIIRFAPPLVIKEDELRESIEIINKTILSF  439 (439)
T ss_dssp             SS--SSEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             CC--CCEEEEECccCCCHHHHHHHHHHHHHHHHhC
Confidence            64  5899999999999999999999999998764

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=100.00  E-value=3.2e-60  Score=488.17  Aligned_cols=408  Identities=22%  Similarity=0.331  Sum_probs=338.1

Q ss_pred             CCCHHHHHHHHhhhcCCccc---ccc----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 011669           57 GPSADEILAKRKTFLSPSLF---HLY----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (480)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~---~~~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~  129 (480)
                      .|++.+++++.+++++.+..   ..+    ..|+++++|+|+++||.|||+||||++|++++++||+||+|++|+.++++
T Consensus         4 ~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~   83 (429)
T 3k28_A            4 FDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAE   83 (429)
T ss_dssp             CHHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHh
Confidence            35788999999999876532   122    56999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC
Q 011669          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      ++.+  ..|+++...+|+++|++.++ +.++|+|+|||+|||+.|+++++.++++++||+++++|||++..++..++...
T Consensus        84 ~~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~  160 (429)
T 3k28_A           84 RGTS--FGAPTEIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGV  160 (429)
T ss_dssp             HCSC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC
T ss_pred             hCcC--cCCCCHHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcc
Confidence            8643  34678999999999999997 57899999999999999999999989999999999999999999988776543


Q ss_pred             ccccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669          210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (480)
Q Consensus       210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  288 (480)
                      .....+. .++.....+.....+++ |    .++++++++.. ++++++|++||+++++|.+.++++|+++|+++|++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~  234 (429)
T 3k28_A          161 ATLGLPDSPGVPEGVAKNTITVAYN-D----LESVKYAFEQF-GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNG  234 (429)
T ss_dssp             -----CCCTTCCHHHHTTEEEEETT-C----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred             cccCCCCcCCCCCcccCceeecCCC-C----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcC
Confidence            3222221 11110000011111222 3    67888888643 2479999999999999999999999999999999999


Q ss_pred             CEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCC---CccccCCCcHHHHHHHH
Q 011669          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGH  365 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~---~~~~t~~~~~~~~aaa~  365 (480)
                      ++||+||||+|| ++| .+++++.+++.||++||||++++|+|+||+++++++++.+...   .+++||++|++++++++
T Consensus       235 ~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~  312 (429)
T 3k28_A          235 ALLIFDEVMTGF-RVA-YNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGY  312 (429)
T ss_dssp             CEEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred             CEEEEecccccc-ccC-cchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHH
Confidence            999999999999 998 6777788899999999999999999999999999999888653   36789999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCC-----cCCCCHHHHHHHHHHHHHcC
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKEMG  440 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~G  440 (480)
                      ++|+.++ +++.++++++++++++.|+++...++.+..+++.|+++++++..+..     ...++......+.+.|+++|
T Consensus       313 aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  391 (429)
T 3k28_A          313 ETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQG  391 (429)
T ss_dssp             HHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCC
Confidence            9999876 78899999999999999999988888888999999999999864321     11234455677889999999


Q ss_pred             ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      |++.+++  .+.+|+  ++++|++++++++++|+++++++
T Consensus       392 v~v~~~~--~~~~r~--~~~~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          392 VFLPPSQ--FEGLFL--STVHSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             EECCSST--TSCBCC--CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             eEEecCC--CCCEEE--ECCCCHHHHHHHHHHHHHHHHHH
Confidence            9999875  456777  48999999999999999998763

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=100.00  E-value=8.8e-60  Score=484.88  Aligned_cols=394  Identities=27%  Similarity=0.419  Sum_probs=317.2

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCC
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGN  157 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~  157 (480)
                      ...|+++++|+|+|+||.||++||||.++++++++||+||+|++|+.+++++..+.+. .++++...+++++|++.++.+
T Consensus         9 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~   88 (430)
T 3i4j_A            9 SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLP   88 (430)
T ss_dssp             SSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCT
T ss_pred             CCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCC
Confidence            4568999999999999999999999999999999999999999999999998765443 577889999999999999877


Q ss_pred             CCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCccccccC--C--CeeEecCCCC
Q 011669          158 LKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--T--GVHHALNPDP  227 (480)
Q Consensus       158 ~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~--g~~~~~~p~~  227 (480)
                      .++|+|+|||+|||+.|+++++.+      +++++||+++++|||++..++.+++.+.++.....  .  ++..++.++.
T Consensus        89 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (430)
T 3i4j_A           89 TFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDP  168 (430)
T ss_dssp             TCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCT
T ss_pred             CCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcc
Confidence            889999999999999999999887      78899999999999999999888775544332211  2  5555665554


Q ss_pred             cCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCC-CCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC
Q 011669          228 YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH  306 (480)
Q Consensus       228 ~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~-~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~  306 (480)
                      +++     ....+++|+++++...++++++|++||++| ++|.+.++++++++|+++|++||++||+||||+|||++| .
T Consensus       169 ~~~-----~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g-~  242 (430)
T 3i4j_A          169 ARN-----GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG-S  242 (430)
T ss_dssp             TSC-----HHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-S
T ss_pred             cch-----hhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-c
Confidence            432     333467888888754335799999999999 999999999999999999999999999999999999999 6


Q ss_pred             ccccccc-CCCcceeeeccccccC-ccccccccCHHHHHhhcCC----CccccCCCcHHHHHHHHHHHHHhhhhHHHHHH
Q 011669          307 FWGFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA  380 (480)
Q Consensus       307 ~~~~~~~-~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~----~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~  380 (480)
                      +++++.+ ++.||++||||++++| +|+||+++++++++.+...    .+..||++|++++++++++|+.++++++.+++
T Consensus       243 ~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~  322 (430)
T 3i4j_A          243 PLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAA  322 (430)
T ss_dssp             SSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             hhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence            7888888 9999999999999999 9999999999999988753    57789999999999999999998888899999


Q ss_pred             HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC--HHHHHHHHHHHHHcCceeecc-----CcCCCEE
Q 011669          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA--KAETLYIMDKMKEMGVLVGKG-----GFYGNVF  453 (480)
Q Consensus       381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~v~~~-----~~~~~~i  453 (480)
                      +++++++++.|+++..+++.+..+++.|+|+++++.+ ..+..+.  ......+.+.|+++||++.++     +..++++
T Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~i  401 (430)
T 3i4j_A          323 KERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGD-LATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHL  401 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC-------------CHHHHHHHHHHTTEECC-----------CEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecc-ccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEE
Confidence            9999999999999988888889999999999999863 2111111  112467888999999999987     2236789


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          454 RITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||+|++++|++++++++++|++++++
T Consensus       402 Ri~~~~~~t~e~i~~~l~~l~~~l~~  427 (430)
T 3i4j_A          402 LLGPPLSITAAEVDGLLALLAGALED  427 (430)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999875

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=100.00  E-value=3.7e-59  Score=479.79  Aligned_cols=409  Identities=25%  Similarity=0.354  Sum_probs=340.5

Q ss_pred             CCCHHHHHHHHhhhcCCcccc---cc----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 011669           57 GPSADEILAKRKTFLSPSLFH---LY----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (480)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~---~~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~  129 (480)
                      .|++.+++++.+++++++...   .+    +.|+++++|+|+++||.||++||||.+|++++++||+||+|++|+.++++
T Consensus         3 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~   82 (427)
T 3fq8_A            3 TIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAME   82 (427)
T ss_dssp             CHHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHH
Confidence            367889999999988765432   12    56999999999999999999999999999999999999999999999998


Q ss_pred             hccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC
Q 011669          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      ++.+.  .++++...+++++|++.++ +.++|+|+|||+||++.|+++++.++++++||+++++|||++..++..++.+.
T Consensus        83 ~~~~~--~~~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~  159 (427)
T 3fq8_A           83 KGTSF--GAPCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGV  159 (427)
T ss_dssp             TCSCC--SSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHH
T ss_pred             hCCCc--CCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcc
Confidence            86542  3478899999999999998 57899999999999999999999999999999999999999998887766443


Q ss_pred             ccccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669          210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (480)
Q Consensus       210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  288 (480)
                      .....+. .++......+....+++ |    .++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~  233 (427)
T 3fq8_A          160 ATLGLPSSPGVPKKTTANTLTTPYN-D----LEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD  233 (427)
T ss_dssp             HHHTCCSCSSSCHHHHTTEEEEETT-C----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTT
T ss_pred             cccCCCCCCCCCCcccCceeecCCC-C----HHHHHHHHHhC-CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            2222111 22211000111111222 3    67888888753 3579999999999999999999999999999999999


Q ss_pred             CEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCC---CccccCCCcHHHHHHHH
Q 011669          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGH  365 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~---~~~~t~~~~~~~~aaa~  365 (480)
                      ++||+||||+|| |+| ..+..+.+++.||++||||++++|+|+||+++++++++.+...   .+.+||++||++++++.
T Consensus       234 ~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~  311 (427)
T 3fq8_A          234 ALLVFDEVITGF-RIA-YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI  311 (427)
T ss_dssp             CEEEEECTTTBT-TTB-TTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred             CEEEEecccccc-ccC-cchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHH
Confidence            999999999999 898 6677788899999999999999999999999999999988753   36789999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHcC
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEMG  440 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~G  440 (480)
                      ++|+.++++++.++++++++++++.|+++...++.+..+++.|+++++++......     ..++......+.+.|+++|
T Consensus       312 aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G  391 (427)
T 3fq8_A          312 KTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG  391 (427)
T ss_dssp             HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCC
Confidence            99999888889999999999999999999888887788999999999998653211     1234445667889999999


Q ss_pred             ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      |++.+++.    .|+++++.+|++++++++++|+++++++
T Consensus       392 i~v~~~~~----~r~~~~~~~t~e~i~~~l~~l~~~l~~~  427 (427)
T 3fq8_A          392 IYLAPSQF----EAGFTSLAHTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             EECCSSTT----SCEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             cEEecCCC----CCEEeeCcCCHHHHHHHHHHHHHHHHhC
Confidence            99998752    2667789999999999999999998764

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=100.00  E-value=2.5e-64  Score=519.38  Aligned_cols=392  Identities=22%  Similarity=0.310  Sum_probs=330.3

Q ss_pred             CCCHHHHHHHHhhhcCCcccc----ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc
Q 011669           57 GPSADEILAKRKTFLSPSLFH----LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ  132 (480)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~  132 (480)
                      .|++++++++.++++..+...    +.+.|+++++|+|+||||+|||+||||++|++++++||+||+|++|+.+|+.+..
T Consensus        54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~  133 (465)
T 2yky_A           54 NPVSAGHHERARRSMPGGNTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL  133 (465)
Confidence            456788999999988754332    3346999999999999999999999999999999999999999999999998852


Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                        ...|+++...+|+++|++.+| +.++|+|+|||+|||+.|++++|.++++++||+++++|||++.+++  ++ + .  
T Consensus       134 --~~~~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg-~-~--  204 (465)
T 2yky_A          134 --NLSTQTENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG-H-A--  204 (465)
Confidence              245678899999999999998 5788999999999999999999999999999999999999999888  22 1 0  


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                         ..|+..    .....+| +|    +++|++++++. ++++++|++||+++++|.++++++|+++|+++|++||++||
T Consensus       205 ---~~g~~~----~~~~~~~-~d----~~~l~~~l~~~-~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI  271 (465)
T 2yky_A          205 ---PTNAPY----HVVLGVY-ND----VEGTADLLKRH-GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLI  271 (465)
Confidence               112211    1111223 23    56788888643 25899999999999999999999999999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---C--CccccCCCcHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---R--NYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---~--~~~~t~~~~~~~~aaa~a~  367 (480)
                      +||||+ | |+| .+++++++++.||++||||++++|+|+||+++++++++.+..   .  .+++||++||+++++++++
T Consensus       272 ~DEv~~-~-r~g-~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aa  348 (465)
T 2yky_A          272 FDEVMT-S-RLS-GGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA  348 (465)
Confidence            999999 7 888 677888999999999999999999999999999999998876   2  4679999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCC-----CcCCCCHHHHHHHHHHHHHcCce
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR-----QLKTPAKAETLYIMDKMKEMGVL  442 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gv~  442 (480)
                      |+.++++++.+++++++++++++|+++.++++.+..+++.|+|+++++..+.     ..+.++......+.+.|+++||+
T Consensus       349 L~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~  428 (465)
T 2yky_A          349 LTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIY  428 (465)
Confidence            9999888999999999999999999998888888889999999999986411     11112223356788899999999


Q ss_pred             eeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          443 VGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       443 v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.+++. +.     ||+++|++||++++++|++++++
T Consensus       429 v~p~~~-~~-----~s~~~t~edid~~l~~l~~~l~~  459 (465)
T 2yky_A          429 LAPRGM-YA-----LSLEIADAGRDAFAEALADFIGE  459 (465)
Confidence            998752 22     77899999999999999998865

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=100.00  E-value=1.6e-59  Score=488.15  Aligned_cols=405  Identities=24%  Similarity=0.360  Sum_probs=322.0

Q ss_pred             CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhc--c
Q 011669           55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI--Q  132 (480)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~--~  132 (480)
                      .++|++.+++++..+++.+..   .+.|+.+++|+|+|+||.|||+||||++|++++++||+||+|++|+.+|+...  .
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~   98 (472)
T 1ohv_A           22 VPGPRSRELMKQLNIIQNAEA---VHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFI   98 (472)
T ss_dssp             SSCHHHHHHHHHHHHHSCCTT---CCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHH
T ss_pred             CCCccHHHHHHHHHhhhcccc---ccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccc
Confidence            456778889998888875432   23467889999999999999999999999999999999999999999987543  2


Q ss_pred             cccccc---CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh-----------c-------------C--
Q 011669          133 HSTVLY---LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----------T-------------G--  183 (480)
Q Consensus       133 ~~~~~~---~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~-----------~-------------~--  183 (480)
                      +....+   ..+...+++++|++.++.+.++|+|+|||+|||+.|||+++.+           |             +  
T Consensus        99 ~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~  178 (472)
T 1ohv_A           99 NRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCP  178 (472)
T ss_dssp             CCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSC
T ss_pred             cccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCC
Confidence            322111   2345566666677777767889999999999999999999754           1             3  


Q ss_pred             CceEEEEcCCcccccccccccccCCCc-cccccCCCeeEecCCCCcCCCCCCCh-------HHHHHHHHHHHHccCC--C
Q 011669          184 CNDIISLRNAYHGNAAGTMGATAQSNW-KFNVVQTGVHHALNPDPYRGVFGADG-------EMYAKDVQDLIDFGTS--G  253 (480)
Q Consensus       184 ~~~ii~~~~~yhG~~~~~~~~~~~~~~-~~~~~~~g~~~~~~p~~~~~~~~~d~-------~~~~~~le~~i~~~~~--~  253 (480)
                      +++||+++++|||++.+++++++...+ ....+..++..+++|. ++.++..+.       ...+++|+++++....  .
T Consensus       179 r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  257 (472)
T 1ohv_A          179 DYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKK  257 (472)
T ss_dssp             CCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCc-ccCccccccccchhHHHHHHHHHHHHHHhcCCCCC
Confidence            589999999999999999998875433 1122223444445542 333321110       1246788888864211  2


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCC--cceeeeccc-cccCc
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV--PDIVTMAKG-IGNGI  330 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~--pDivt~sK~-~g~G~  330 (480)
                      ++++|++||+++++|.++++++|+++|+++|++||++||+||||+|||++| .+|+++.+++.  ||++||||+ ++||+
T Consensus       258 ~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~gv~~~~Di~t~sK~~l~GG~  336 (472)
T 1ohv_A          258 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGF  336 (472)
T ss_dssp             CEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSGGGGGCCSSCCSEEEECGGGSSEEE
T ss_pred             CEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCC-CchhccccCCCCCCCEEEEccccccCCc
Confidence            799999999999999999999999999999999999999999999999999 67788888886  999999999 78765


Q ss_pred             cccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC-ceeeEeccce
Q 011669          331 PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGF  409 (480)
Q Consensus       331 pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~  409 (480)
                      +    + ++++. .+....+++|+++||+++++++++|+.+.++++.+++++++++++++|+++..+++ .+..+++.|+
T Consensus       337 ~----~-~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~  410 (472)
T 1ohv_A          337 F----H-KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT  410 (472)
T ss_dssp             E----E-CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT
T ss_pred             c----C-chhhc-ccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCce
Confidence            4    3 55552 23445578999999999999999999988888999999999999999999877777 4778999999


Q ss_pred             eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      |+++++..        ......+.+.|+++||++.+++  .++|||+|++++|++||++++++|+++++++
T Consensus       411 ~~~~~~~~--------~~~~~~~~~~l~~~Gv~~~~~g--~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          411 FCSFDTPD--------ESIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             EEEEECSS--------HHHHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEeCC--------hhHHHHHHHHHHHCCeEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            99987632        2245678899999999998865  5799999999999999999999999998764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=100.00  E-value=4.4e-58  Score=466.77  Aligned_cols=373  Identities=30%  Similarity=0.514  Sum_probs=329.6

Q ss_pred             ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC
Q 011669           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN  157 (480)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~  157 (480)
                      +.+.|+++.+|+|+++||.||++||||.++++.+++||+||+|.+|+.+++++..|....++++...+++++|++.++  
T Consensus        15 ~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--   92 (395)
T 3nx3_A           15 YKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA--   92 (395)
T ss_dssp             GGSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT--
T ss_pred             cCCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--
Confidence            446689999999999999999999999999999999999999999999999988776666788999999999999985  


Q ss_pred             CCEEEEeCCHHHHHHHHHHHHHhh-----cCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCC
Q 011669          158 LKVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRG  230 (480)
Q Consensus       158 ~~~v~f~~sGseA~~~Alk~ar~~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~  230 (480)
                      .++++|++||+|||+.|+++++.+     +++++||+++++|||++..++.+++.+.++.....  .++..++.+     
T Consensus        93 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  167 (395)
T 3nx3_A           93 LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----  167 (395)
T ss_dssp             CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----
T ss_pred             CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----
Confidence            578999999999999999999877     67899999999999999999988875544433322  234444322     


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc
Q 011669          231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF  310 (480)
Q Consensus       231 ~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~  310 (480)
                          |    +++|+++++    +++++|++||+++++|.+.++++++++|+++|++||++||+||||+|||++| .++++
T Consensus       168 ----d----~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-~~~~~  234 (395)
T 3nx3_A          168 ----D----ISSVEKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSG-KFFAY  234 (395)
T ss_dssp             ----C----HHHHHTTCC----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGG
T ss_pred             ----C----HHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCC-cchhH
Confidence                2    577777764    4799999999999999999999999999999999999999999999999999 67778


Q ss_pred             cccCCCcceeeeccccccCccccccccCHHH-HHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011669          311 EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEI-AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE  389 (480)
Q Consensus       311 ~~~~~~pDivt~sK~~g~G~pig~v~~~~~~-~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~  389 (480)
                      +.+++.||++||||++++|+|+||+++++++ ++.+....+..|+++|+++++++.++|+.++++++.++++++++++++
T Consensus       235 ~~~~~~~d~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~  314 (395)
T 3nx3_A          235 EHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQ  314 (395)
T ss_dssp             GGGTCCCSEEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999 888887778899999999999999999988878899999999999999


Q ss_pred             HHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHH
Q 011669          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       390 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~  469 (480)
                      .|.++..+++.+..+++.|+++++++....        ....+.+.|+++||++.+++  .+++||+|++.+|+++++++
T Consensus       315 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~l~~~Gi~v~~~~--~~~iRi~~~~~~t~e~i~~~  384 (395)
T 3nx3_A          315 SLDELINEFDFCKKRKGLGFMQGLSLDKSV--------KVAKVIQKCQENALLLISCG--ENDLRFLPPLILQKEHIDEM  384 (395)
T ss_dssp             HHHHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHH
T ss_pred             HHHHHHHhCCCeEEEEeEEEEEEEEeCCcc--------hHHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHH
Confidence            999998888888889999999999985421        14678888999999999876  68999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 011669          470 VDVMDYSLSKM  480 (480)
Q Consensus       470 l~~l~~~l~~~  480 (480)
                      +++|+++++++
T Consensus       385 l~~l~~~l~~~  395 (395)
T 3nx3_A          385 SEKLRKALKSF  395 (395)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999998753

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=100.00  E-value=1.5e-58  Score=478.45  Aligned_cols=400  Identities=25%  Similarity=0.344  Sum_probs=327.2

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEe-CCCCEEEeccCCcccccCCCCCHHHH-H-HHHH---HHHhcccc
Q 011669           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFD-ENGRRYLDAFGGIATVCCGHCHPYVV-D-SIVN---QIKRIQHS  134 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d-~dG~~ylD~~~g~~~~~lGh~~p~v~-~-A~~~---~~~~~~~~  134 (480)
                      +++++...+++...   .++.++.+++|+|+|+|| .||++||||++|++++++||+||+|+ + |+.+   ++.++.|.
T Consensus        18 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~   94 (449)
T 2cjg_A           18 DRVHEVLGRSMLVD---GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPS   94 (449)
T ss_dssp             GGHHHHHHTTSCCC---SCSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHhhccc---CCCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            45776666665332   233334457999999999 99999999999999999999999999 9 9999   88887665


Q ss_pred             ccccCChHHHHHHHHHHHhCC-CCCCEEEEeCCHHHHHHHHHHHHHhhcC------------CceEEEEcCCcccccccc
Q 011669          135 TVLYLNHAIADFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLYTG------------CNDIISLRNAYHGNAAGT  201 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~-~~~~~v~f~~sGseA~~~Alk~ar~~~~------------~~~ii~~~~~yhG~~~~~  201 (480)
                      +..|.++...+++++|++.++ .+.++|+|+|||+|||+.|+++++.+++            +++||+++++|||++.++
T Consensus        95 ~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~  174 (449)
T 2cjg_A           95 NSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT  174 (449)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG
T ss_pred             CcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccch
Confidence            556778889999999999986 4678999999999999999999987654            789999999999999999


Q ss_pred             cccccC-CCccccccC--CCeeEecCCC--CcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCCh
Q 011669          202 MGATAQ-SNWKFNVVQ--TGVHHALNPD--PYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY  276 (480)
Q Consensus       202 ~~~~~~-~~~~~~~~~--~g~~~~~~p~--~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  276 (480)
                      +.+++. +.++....+  .++..+++++  ...+.|..+....+++|+++++.. .+++++|++||+||++|.++++++|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~~vi~ep~~~~~G~~~~~~~~  253 (449)
T 2cjg_A          175 LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEF  253 (449)
T ss_dssp             GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS-TTTEEEEEECSEETTTTCEECCHHH
T ss_pred             hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc-CCceEEEEEeCcCCCCCCccCCHHH
Confidence            988875 222222211  2444444433  111111001123456788888643 2479999999999999988899999


Q ss_pred             HHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhh-----cCCCcc
Q 011669          277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL-----TRRNYF  351 (480)
Q Consensus       277 l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l-----~~~~~~  351 (480)
                      +++|+++|++||++||+||||+||||+| .+|+++.+++.||++||||++    |+||+++++++++.+     ....+.
T Consensus       254 l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~  328 (449)
T 2cjg_A          254 FAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLN  328 (449)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSC
T ss_pred             HHHHHHHHHHCCcEEEEeccccCCCccC-cceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccc
Confidence            9999999999999999999999999999 677778889999999999999    899999999998862     334567


Q ss_pred             ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCc-eeeEeccceeEEEEEecCCCcCCCCHHHHH
Q 011669          352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETL  430 (480)
Q Consensus       352 ~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~  430 (480)
                      +||++|+++++++.++|+.++++++.+++++++++++++|+++..+++. +..+++.|+|+++++..        .....
T Consensus       329 ~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~  400 (449)
T 2cjg_A          329 STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT--------TADRD  400 (449)
T ss_dssp             CSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS--------HHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC--------hHHHH
Confidence            8999999999999999999888889999999999999999998777876 77889999999988732        22356


Q ss_pred             HHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          431 YIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       431 ~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+.+.|+++||++.+++  .+++||+|++++|+++|++++++|++++++
T Consensus       401 ~~~~~l~~~Gv~v~~~g--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  447 (449)
T 2cjg_A          401 ELIRQLWQRAVIVLPAG--ADTVRFRPPLTVSTAEIDAAIAAVRSALPV  447 (449)
T ss_dssp             HHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCeEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            78888999999999875  589999999999999999999999999865

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=100.00  E-value=1.6e-57  Score=466.76  Aligned_cols=388  Identities=29%  Similarity=0.485  Sum_probs=316.2

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC
Q 011669           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN  140 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~  140 (480)
                      .+++++..+++.+.   +.+.|+++.+|+|+|+||.||++||||.+|++++++||+||+|.+|+.+++++..+.+..|.+
T Consensus        22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~   98 (420)
T 2pb2_A           22 AITRATFDEVILPV---YAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTN   98 (420)
T ss_dssp             --------------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCC
T ss_pred             HHHHHHHHHhhhcc---ccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCC
Confidence            45666666776554   335689999999999999999999999999999999999999999999999887665555778


Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      +...+++++|++.++  .++|+|++||+||++.|+++++.+      +++++||+++++|||.+..++..++...++..+
T Consensus        99 ~~~~~l~~~la~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~  176 (420)
T 2pb2_A           99 EPALRLGRKLIDATF--AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF  176 (420)
T ss_dssp             HHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred             HHHHHHHHHHHhhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence            899999999999985  578999999999999999998875      566799999999999998887776543222111


Q ss_pred             cC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          215 VQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       215 ~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                      .+  .++..++.+         |    +++|+++++    +++++|++||++|++|.+.++++++++|+++|++||++||
T Consensus       177 ~p~~~~~~~~~~~---------d----~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI  239 (420)
T 2pb2_A          177 GPKPADIIHVPFN---------D----LHAVKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLV  239 (420)
T ss_dssp             SSCCSCEEEECTT---------C----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCCeEEecCC---------C----HHHHHHHhc----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEE
Confidence            11  234444321         3    678888875    3799999999999999888899999999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~  372 (480)
                      +||+|+|||++| .+++++.+++.||++||||++++|+|+||+++++++++.+....+..||++|+++++++.++|+.++
T Consensus       240 ~Dev~~g~~~~g-~~~~~~~~~~~~diit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~  318 (420)
T 2pb2_A          240 FDEVQCGMGRTG-DLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIIN  318 (420)
T ss_dssp             EECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHS
T ss_pred             EEcCCcCcccCC-cHHHHHhcCCCCCeEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence            999999999999 6666777889999999999999999999999999998888766677899999999999999999988


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCE
Q 011669          373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNV  452 (480)
Q Consensus       373 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~  452 (480)
                      ++++.++++++++++++.|+++...++.+..+++.|+++++++.....      .....+.+.|+++||++.+++  .++
T Consensus       319 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~------~~~~~l~~~l~~~Gi~v~~~~--~~~  390 (420)
T 2pb2_A          319 TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYK------GRARDFLYAGAEAGVMVLNAG--ADV  390 (420)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGT------TCHHHHHHHHHHTTEECEESS--TTE
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCch------HHHHHHHHHHHHCCCEEEeCC--CCE
Confidence            788999999999999999998866677777889999999998853210      014568888999999999875  579


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          453 FRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       453 iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +||+||+.+|++|+++++++|++++++
T Consensus       391 iRl~~~~~~t~eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          391 MRFAPSLVVEEADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998865

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=100.00  E-value=1.7e-57  Score=468.45  Aligned_cols=409  Identities=23%  Similarity=0.331  Sum_probs=329.2

Q ss_pred             CCCCHHHHHHHHhhhcCCccc----cc-cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHh
Q 011669           56 DGPSADEILAKRKTFLSPSLF----HL-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (480)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~----~~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~  130 (480)
                      ++|++++++++.++++.++..    .+ .+.|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~   87 (434)
T 2epj_A            8 SGEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR   87 (434)
T ss_dssp             -CHHHHHHHHHHTTTSGGGSSSGGGGGCSSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred             CCcchHHHHHHHHhhcCCCcCcccccccCCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh
Confidence            457889999999998865432    12 3459999999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCc
Q 011669          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (480)
Q Consensus       131 ~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  210 (480)
                      ..+  ..+.++...+++++|++.++ +.++|+|++||+||++.|+++||.++++++||+++++|||++..++..++....
T Consensus        88 ~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  164 (434)
T 2epj_A           88 GWL--YGAPGEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAA  164 (434)
T ss_dssp             CSC--CSSCCHHHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC----
T ss_pred             CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCcc
Confidence            532  34678889999999999987 578999999999999999999998889999999999999999988776653221


Q ss_pred             cccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669          211 KFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       211 ~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                      .+..+. .|+.....++.+..++ +|    +++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++||+
T Consensus       165 ~~~~p~~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~  238 (434)
T 2epj_A          165 HYGVPTSAGVPEAVARLTLVTPY-ND----VEALERVFAEY-GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA  238 (434)
T ss_dssp             --CEESSTTCCHHHHTTEEEEET-TC----HHHHHHHHHHH-GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC
T ss_pred             ccCCCCCCCCCCcccCceEecCC-CC----HHHHHHHHHhC-CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC
Confidence            111111 1221000000111112 23    67788888642 24799999999999999988899999999999999999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC-C--CccccCCCcHHHHHHHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-R--NYFNTFGGNPVCTAAGHA  366 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~-~--~~~~t~~~~~~~~aaa~a  366 (480)
                      +||+||+|+|| ++| ..+.++.+++.||++||||++++|+|+||+++++++++.+.. .  .+.+||++||++++++.+
T Consensus       239 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a  316 (434)
T 2epj_A          239 LLILDEVVTGF-RLG-LEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLA  316 (434)
T ss_dssp             EEEEEETTTTT-TSS-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHH
T ss_pred             EEEEEcchhce-eCC-cchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHH
Confidence            99999999999 788 566677889999999999999999999999999999988865 2  356899999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCC-----cCCCCHHHHHHHHHHHHHcCc
Q 011669          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKEMGV  441 (480)
Q Consensus       367 ~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gv  441 (480)
                      +|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++.....     .+.++......+.+.|+++||
T Consensus       317 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  396 (434)
T 2epj_A          317 TLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGV  396 (434)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCe
Confidence            999988788999999999999999999876677767789999999999854210     011223446678899999999


Q ss_pred             eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++.+++.  .  |+.+++.+|++++++++++|++++++
T Consensus       397 ~v~~~~~--~--~~~~~~~~t~e~i~~~l~~l~~~l~~  430 (434)
T 2epj_A          397 FIAPSNL--E--AVFTGLPHQGEALEIAVEGLRSSLKT  430 (434)
T ss_dssp             ECCSSTT--S--CEECCTTCSHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCC--C--cEEEeccCCHHHHHHHHHHHHHHHHH
Confidence            9998752  3  34566899999999999999998864

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=100.00  E-value=3.8e-56  Score=457.03  Aligned_cols=404  Identities=24%  Similarity=0.366  Sum_probs=326.3

Q ss_pred             CCHHHHHHHHhhhcCCcccc---cc----CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHh
Q 011669           58 PSADEILAKRKTFLSPSLFH---LY----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR  130 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~---~~----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~  130 (480)
                      +++++++++.++++.++...   .+    ..|+++++++|+++||.||++||||.+|++++++||+||+|++|+.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~   83 (424)
T 2e7u_A            4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER   83 (424)
T ss_dssp             HHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHh
Confidence            46788999999998654321   12    248999999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCc
Q 011669          131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (480)
Q Consensus       131 ~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  210 (480)
                      ..+  ..|.++...+++++|+++++ +.++|+|++||+||++.|+++||.++++++||+++++|||++..++..++....
T Consensus        84 ~~~--~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  160 (424)
T 2e7u_A           84 GLT--FGAPSPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGAL  160 (424)
T ss_dssp             CSC--CSSCCHHHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSC
T ss_pred             CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCccc
Confidence            533  24678889999999999997 678999999999999999999998889999999999999999988776554322


Q ss_pred             cccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669          211 KFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       211 ~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                      .+..+. .|+.....+..+..++ +|    +++|++++++. ++++++|++||+++++|.+.++++|+++|+++ ++||+
T Consensus       161 ~~~~p~~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~  233 (424)
T 2e7u_A          161 TLGVPSSAGVPEEYAKLTLVLEY-ND----PEGLREVLKRR-GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGV  233 (424)
T ss_dssp             CBCEESSTTCCHHHHTTEEEECT-TC----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTC
T ss_pred             ccCCCCCCCCCCccCCceEeCCC-CC----HHHHHHHHHhC-CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCC
Confidence            211111 1221000001111122 23    67788888642 24789999999999999888899999999999 99999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC-C--CccccCCCcHHHHHHHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-R--NYFNTFGGNPVCTAAGHA  366 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~-~--~~~~t~~~~~~~~aaa~a  366 (480)
                      +||+||+|+|| ++| ..++++.+++.||++||||++++|+|+||+++++++++.+.. .  .+.+||++||++++++.+
T Consensus       234 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a  311 (424)
T 2e7u_A          234 LLIADEVMTGF-RLA-FGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLA  311 (424)
T ss_dssp             EEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHH
T ss_pred             EEEEecCcccc-ccc-hhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHH
Confidence            99999999999 888 566677889999999999999999999999999999998875 2  356899999999999999


Q ss_pred             HHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCC-----cCCCCHHHHHHHHHHHHHcC
Q 011669          367 VLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKEMG  440 (480)
Q Consensus       367 ~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~G  440 (480)
                      +|+.+++ +++.+++++++++++++|+++.++++.+..+++.|+|+++++.....     .+.++......+.+.|+++|
T Consensus       312 al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  391 (424)
T 2e7u_A          312 TLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRG  391 (424)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCC
Confidence            9999887 88999999999999999999877777767789999999999853210     01122334667888999999


Q ss_pred             ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      |++.+++.  .  |+.+++++|++++++++++|++++
T Consensus       392 v~v~~~~~--~--~~~~~~~~t~~~i~~~l~~l~~~l  424 (424)
T 2e7u_A          392 IYWPPSNF--E--AAFLSVAHREEDVEKTLEALRKAL  424 (424)
T ss_dssp             EECCSSSS--S--CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             eEEeccCC--C--ceEeeccCCHHHHHHHHHHHHHhC
Confidence            99998752  2  344668999999999999998863

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=100.00  E-value=9.9e-56  Score=457.27  Aligned_cols=393  Identities=25%  Similarity=0.396  Sum_probs=326.7

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNL  158 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~~~  158 (480)
                      +.|+++.+|+|+++||.||++|||+.++.+++++||+||+|++|+.+++.+..+... .+.++...+++++|++.++.+.
T Consensus        31 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~  110 (449)
T 3a8u_X           31 RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNL  110 (449)
T ss_dssp             HSCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTE
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            358999999999999999999999999999999999999999999999987642122 5678889999999999998778


Q ss_pred             CEEEEeCCHHHHHHHHHHHHHhhc------CCceEEEEcCCcccccccccccccCCCcccccc--CCCeeEecCCCCcCC
Q 011669          159 KVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRG  230 (480)
Q Consensus       159 ~~v~f~~sGseA~~~Alk~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~g~~~~~~p~~~~~  230 (480)
                      ++|+|++||+||++.|+++++.++      ++++||+++++|||.+..++..++.+.++..+.  ..++..++.|..++.
T Consensus       111 ~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~  190 (449)
T 3a8u_X          111 NHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASN  190 (449)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGG
T ss_pred             CEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccC
Confidence            899999999999999999988765      678999999999999988887766433222221  246777777765554


Q ss_pred             CCC-CC----hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC
Q 011669          231 VFG-AD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS  305 (480)
Q Consensus       231 ~~~-~d----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~  305 (480)
                      +|. .|    ...++++|++++++..++++++|++||+++++|.+.++++|+++|+++|++||++||+||||+|||++| 
T Consensus       191 ~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-  269 (449)
T 3a8u_X          191 AYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-  269 (449)
T ss_dssp             TTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-
T ss_pred             ccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC-
Confidence            431 12    233467888888743224789999999999999888999999999999999999999999999999998 


Q ss_pred             CcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC---------CccccCCCcHHHHHHHHHHHHHhhhhH
Q 011669          306 HFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR---------NYFNTFGGNPVCTAAGHAVLKVIQKDK  375 (480)
Q Consensus       306 ~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~---------~~~~t~~~~~~~~aaa~a~L~~i~~~~  375 (480)
                      .++.++.+++.||++||||++++| +|+||+++++++++.+...         .+..|+++|+++++++.++|+.+++++
T Consensus       270 ~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~  349 (449)
T 3a8u_X          270 SMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKEN  349 (449)
T ss_dssp             SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcC
Confidence            666778889999999999999988 9999999999999888653         356799999999999999999988788


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEE
Q 011669          376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRI  455 (480)
Q Consensus       376 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi  455 (480)
                      +.+++++++++++++|+++ .+++.+..+++.|+++++++.......   ......+.+.|+++||++.+++   +++||
T Consensus       350 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~g---~~iRi  422 (449)
T 3a8u_X          350 LVQSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDGDA---IVRPFEAGMALWKAGFYVRFGG---DTLQF  422 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTTBS---SHHHHHHHHHHHHHTEECEEET---TEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCcccc---cccHHHHHHHHHHCCcEEecCC---CEEEE
Confidence            9999999999999999884 346777778899999999986432110   0012358888889999999874   78999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          456 TPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      +||+.+|++++++++++|+++++++
T Consensus       423 s~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          423 GPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998753

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=9.7e-55  Score=445.94  Aligned_cols=398  Identities=29%  Similarity=0.483  Sum_probs=324.0

Q ss_pred             HHHHHHHHhhh-cCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCC-CHHHHHHHHHHHHhcccc-cc
Q 011669           60 ADEILAKRKTF-LSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQHS-TV  136 (480)
Q Consensus        60 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~-~~  136 (480)
                      +.+++++..++ +.+.... +..|+++.+++|+++||.+|++|||+.++.+++++||+ ||+|++|+.+++++..+. ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~   81 (419)
T 2eo5_A            3 SRKIIEESDIYLATSTRDP-ELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAN   81 (419)
T ss_dssp             HHHHHHHHHHHSCCCCCSS-CCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCS
T ss_pred             hHHHHHHHHhhhccccccc-cCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcccccc
Confidence            45677777777 6665332 23689999999999999999999999999999999999 999999999999876542 24


Q ss_pred             ccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Cccccc
Q 011669          137 LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNV  214 (480)
Q Consensus       137 ~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~  214 (480)
                      .|+++...+++++|++.++.+ .++|+|++||+||++.|+++++.++ +++||+++++|||.+..++.+++.. .++...
T Consensus        82 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~  160 (419)
T 2eo5_A           82 DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIV  160 (419)
T ss_dssp             CSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence            577888999999999999876 5799999999999999999988766 7899999999999999988877643 333222


Q ss_pred             c--CCCeeEecCCCCcCCCCCCC----h--H--HHHHHHH-HHHHccC-CCceEEEEEcccCCCCcceeCCCChHHHHHH
Q 011669          215 V--QTGVHHALNPDPYRGVFGAD----G--E--MYAKDVQ-DLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYK  282 (480)
Q Consensus       215 ~--~~g~~~~~~p~~~~~~~~~d----~--~--~~~~~le-~~i~~~~-~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  282 (480)
                      .  ..++..++.++.++.+|+.+    .  +  ..+++|+ ++++... ++++++|++||+|+++|.++++++++++|++
T Consensus       161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~  240 (419)
T 2eo5_A          161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK  240 (419)
T ss_dssp             CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred             CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence            1  13677777777666666531    0  1  2367788 7776321 1478999999999999988889999999999


Q ss_pred             HHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHH
Q 011669          283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCT  361 (480)
Q Consensus       283 l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~  361 (480)
                      +|++||++||+||+|+|||++| ..++++..++.||++||||++++| +|+||++++++++ .+ ...+.+|+++|++++
T Consensus       241 l~~~~~~~li~DE~~~~~g~~g-~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~  317 (419)
T 2eo5_A          241 LAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALAC  317 (419)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CCCCCHHHH
T ss_pred             HHHHcCCEEEEeccccCCccCc-chhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCCCCCHHHH
Confidence            9999999999999999999998 566677788999999999999999 9999999999987 66 445678999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCc
Q 011669          362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGV  441 (480)
Q Consensus       362 aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  441 (480)
                      +++.++|+.+++  +.++++++++++++.|+++      +..+++.|+|+++++..       ...... +.+.|+++||
T Consensus       318 ~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~-------~~~~~~-~~~~l~~~Gv  381 (419)
T 2eo5_A          318 AIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE-------KKVRDR-IIGESFKRGL  381 (419)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC-------HHHHHH-HHHHHHHTTE
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec-------CccHHH-HHHHHHHCCC
Confidence            999999997654  7888888899888888664      45678899999998731       112245 8888899999


Q ss_pred             eeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          442 LVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       442 ~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ++.+++  .+++||+|++.+|++++++++++|+++++++
T Consensus       382 ~v~~~~--~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          382 LLLPAG--RSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             ECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            999876  5799999999999999999999999988753

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=100.00  E-value=1.6e-54  Score=448.87  Aligned_cols=402  Identities=22%  Similarity=0.299  Sum_probs=307.3

Q ss_pred             CCHHHHHHHHhhhcCCcccc----ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc
Q 011669           58 PSADEILAKRKTFLSPSLFH----LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH  133 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~  133 (480)
                      |++++++++.++++.++...    +.+.|+++++|+|+++||.||++||||.+|++++++||+||+|++|+.+++++..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~   91 (453)
T 2cy8_A           12 EGSVFWAQRARSVMPDGVTADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ   91 (453)
T ss_dssp             HHHHHHHHHHHHHSCCC------CCSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCS
T ss_pred             chhHHHHHHHHhhcCCCCCccccccCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCC
Confidence            56788999999998765322    23459999999999999999999999999999999999999999999999987533


Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                        ..+.++...+++++|++.++ +.++|+|++||+||++.|+++||.++++++||+++++|||++..++..++. .+..+
T Consensus        92 --~~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~  167 (453)
T 2cy8_A           92 --YAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNS-HFDGQ  167 (453)
T ss_dssp             --SCSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC---------------------
T ss_pred             --CCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCC-ccCCC
Confidence              24678899999999999987 678999999999999999999988888899999999999999887765532 11000


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                      . ..|+.....+..+..+| +|    +++|++++++. ++++++|++||+++++|.+.++++|+++|+++|++||++||+
T Consensus       168 ~-~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~  240 (453)
T 2cy8_A          168 P-APGVLPETTANTLLIRP-DD----IEGMREVFANH-GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFIL  240 (453)
T ss_dssp             ---------CGGGEEEECT-TC----HHHHHHHHHHH-GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred             c-CCCCCccccCceeecCC-CC----HHHHHHHHHhc-CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence            0 01221100001111122 23    67788888642 247899999999999998888999999999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---C--CccccCCCcHHHHHHHHHHH
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---R--NYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---~--~~~~t~~~~~~~~aaa~a~L  368 (480)
                      ||+|+|| ++| ..+.++.+++.||++||||++++|+|+||+++++++++.+..   .  .+.+||++||++++++.++|
T Consensus       241 DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal  318 (453)
T 2cy8_A          241 DEVISGF-RVG-NHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI  318 (453)
T ss_dssp             ECTTTTT-TTC-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHH
T ss_pred             ecCcccc-ccC-chhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHH
Confidence            9999999 888 566677789999999999999999999999999999988876   1  35679999999999999999


Q ss_pred             HH-hhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEec-----C------CCcCCCCHHHHHHHHHHH
Q 011669          369 KV-IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT-----D------RQLKTPAKAETLYIMDKM  436 (480)
Q Consensus       369 ~~-i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~-----~------~~~~~~~~~~~~~~~~~l  436 (480)
                      +. + .+++.+++++++++++++|+++..+++.+..+++.|+|+++++..     +      .....++......+.+.|
T Consensus       319 ~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  397 (453)
T 2cy8_A          319 DTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMAL  397 (453)
T ss_dssp             HHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHH
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHH
Confidence            98 7 778899999999999999999877777777789999999999853     1      001112233456788899


Q ss_pred             HHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          437 KEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       437 ~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++||++.++    +.+|  +++.+|++++++++++|++++++
T Consensus       398 ~~~Gv~v~~~----~~~~--l~~~~t~~~i~~~l~~l~~~l~~  434 (453)
T 2cy8_A          398 ILEGVDIGGR----GSVF--LSAQHEREHVEHLVTTFDRVLDR  434 (453)
T ss_dssp             HHTTEECBTT----TEEE--CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCeEEeCC----CCEE--eeccCCHHHHHHHHHHHHHHHHH
Confidence            9999999653    2355  56899999999999999998764

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=100.00  E-value=3.4e-53  Score=435.64  Aligned_cols=397  Identities=26%  Similarity=0.376  Sum_probs=320.6

Q ss_pred             HHHhhhcCCccccc-cCCCeE-EEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-cccCCh
Q 011669           65 AKRKTFLSPSLFHL-YSKPLN-VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VLYLNH  141 (480)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~p~~-~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~~~~~  141 (480)
                      ...++++.+....+ .+.|++ +.+++|+++||.||++|||+.++.+++++||+||+|++|+.+++++..+.. ..|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~   86 (429)
T 1s0a_A            7 AFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHA   86 (429)
T ss_dssp             HHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECH
T ss_pred             hHHHHhhccccccccccCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCH
Confidence            34445554433222 223665 899999999999999999999999999999999999999999998764432 356778


Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcC-----CceEEEEcCCcccccccccccccCCC-cccccc
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG-----CNDIISLRNAYHGNAAGTMGATAQSN-WKFNVV  215 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~-----~~~ii~~~~~yhG~~~~~~~~~~~~~-~~~~~~  215 (480)
                      ...+++++|++.++.+.++|+|++||+||++.|+++++.+++     +++||+++++|||+...++.+++... ++....
T Consensus        87 ~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~  166 (429)
T 1s0a_A           87 PAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK  166 (429)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence            889999999999987788999999999999999998876544     78999999999999988877765332 221111


Q ss_pred             --CCCeeEecCCCCc-CCCCC-CChHHHHHHHHHHHHccCCCceEEEEEccc-CCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669          216 --QTGVHHALNPDPY-RGVFG-ADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGL  290 (480)
Q Consensus       216 --~~g~~~~~~p~~~-~~~~~-~d~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gil  290 (480)
                        ..++..++.+..+ ...|+ .|    +++++++++.. ++++++|++||+ +|++|.++++++++++|+++|++||++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l~~~-~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~  241 (429)
T 1s0a_A          167 GYLPENLFAPAPQSRMDGEWDERD----MVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL  241 (429)
T ss_dssp             TTSCCCEEECCCCSBC-CCCCGGG----GHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCE
T ss_pred             CCCCCceEeCCCcccccccchHHH----HHHHHHHHHhC-CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence              1355566655321 11221 22    57788887642 247899999999 999999889999999999999999999


Q ss_pred             EEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-----CccccCCCcHHHHHHH
Q 011669          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFNTFGGNPVCTAAG  364 (480)
Q Consensus       291 lI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-----~~~~t~~~~~~~~aaa  364 (480)
                      ||+||+|+|||++| ..++++..++.||++||||++++| +|+||+++++++++.+...     .+.+|+++|+++++++
T Consensus       242 li~De~~~~~g~~g-~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~  320 (429)
T 1s0a_A          242 LIADEIATGFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAA  320 (429)
T ss_dssp             EEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHH
T ss_pred             EEEeehhhCCcccc-hHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHH
Confidence            99999999999998 566677788899999999999999 9999999999998887653     2557999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee
Q 011669          365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG  444 (480)
Q Consensus       365 ~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~  444 (480)
                      .++|+.++++++.+++++++++++++|+++.. ++.+..+++.|+++++++...        .....+.+.|+++||++.
T Consensus       321 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~Gi~v~  391 (429)
T 1s0a_A          321 NASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP--------VNMAALQKFFVEQGVWIR  391 (429)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC--------BCHHHHHHHHHHTTEECC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc--------ccHHHHHHHHHHCCCEEe
Confidence            99999888778899999999999999988643 566667888899999987431        013567888889999998


Q ss_pred             ccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          445 KGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       445 ~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.   ++++||+|++.+|++|+++++++|++++++
T Consensus       392 ~~---~~~iRis~~~~~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          392 PF---GKLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             CB---TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             cc---CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            75   478999999999999999999999998754

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=100.00  E-value=9.1e-53  Score=431.58  Aligned_cols=415  Identities=29%  Similarity=0.483  Sum_probs=337.2

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-cc
Q 011669           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VL  137 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~  137 (480)
                      ++.+++++..+++.++...+  .|+++.+++|+++||.+|++||||.++.++.++||+||+|.+|+.+++.+..+.. ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~   80 (426)
T 1sff_A            3 SNKELMQRRSQAIPRGVGQI--HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV   80 (426)
T ss_dssp             CHHHHHHHHHHHSCTTBCCS--EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT
T ss_pred             hHHHHHHHHHHhcCcccccc--CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccc
Confidence            56778888888887654432  3899999999999999999999999999999999999999999999998754432 34


Q ss_pred             cCChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCC-Ccccccc
Q 011669          138 YLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV  215 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~  215 (480)
                      ++++...+|+++|+++++++. ++|+|++||+||++.++++++.++++++||+++++|||....++..++.. .++....
T Consensus        81 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~  160 (426)
T 1sff_A           81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  160 (426)
T ss_dssp             EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             cCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCccccccccC
Confidence            567889999999999995434 78999999999999999988777676799999999999988777665532 1221111


Q ss_pred             C--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc-CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          216 Q--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       216 ~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                      .  .++..++++..+++   .+....+++|+++++.. .++++++|++||+++++|.+.++++++++|+++|++||++||
T Consensus       161 ~~~~~v~~v~~~~~~~~---~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li  237 (426)
T 1sff_A          161 LMPGHVYRALYPCPLHG---ISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI  237 (426)
T ss_dssp             CCCSSEEEECCCBGGGT---BCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCcEEeCCCccccc---cchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            1  24555554432211   11223367888888631 124789999999988899788899999999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~  372 (480)
                      +||+|+||+++| .+++++..++.||++||||++++|+|+||+++++++++.+....+..|++.|+++++++.++|+.++
T Consensus       238 ~De~~~~~~~~g-~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~  316 (426)
T 1sff_A          238 ADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE  316 (426)
T ss_dssp             EECTTTTTTTTS-SSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             EechhhccCccc-chhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH
Confidence            999999999998 6666777888999999999999999999999999999888765667899999999999999999988


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCE
Q 011669          373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNV  452 (480)
Q Consensus       373 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~  452 (480)
                      ++++.+++++++++++++|+++...++.+..+++.|+++++++......+.|.......+.+.|+++||++.++..+.++
T Consensus       317 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~  396 (426)
T 1sff_A          317 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNV  396 (426)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCE
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCE
Confidence            77889999999999999999986667767777888999999985422122233345677888999999999998766789


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          453 FRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       453 iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +||++++.++++++++++++|++++++
T Consensus       397 iRi~~~~~~~~~~i~~~~~~l~~~l~~  423 (426)
T 1sff_A          397 LRILVPLTIEDAQIRQGLEIISQCFDE  423 (426)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998764

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=5.6e-53  Score=428.57  Aligned_cols=380  Identities=27%  Similarity=0.482  Sum_probs=325.6

Q ss_pred             HHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCCh
Q 011669           62 EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH  141 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~  141 (480)
                      +++++.++++.+.   +.+.|+++.+|+|+++||.||++||||.++++++++||+||+|.+|+.+++++..+....+.++
T Consensus         2 ~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~   78 (392)
T 3ruy_A            2 DIIELTDTYGANN---YHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSD   78 (392)
T ss_dssp             CHHHHHHHHBCTT---CCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEET
T ss_pred             hHHHHHHhhhhcc---CCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCH
Confidence            3566667777554   3456899999999999999999999999999999999999999999999998877765567788


Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh--------cCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      ...+++++|++.++  .++++|++||+||++.|+++++..        +++++||++.++|||....++.+++...++..
T Consensus        79 ~~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  156 (392)
T 3ruy_A           79 QLGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRG  156 (392)
T ss_dssp             THHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTT
T ss_pred             HHHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccc
Confidence            89999999999985  679999999999999999998876        56789999999999999999888776544433


Q ss_pred             ccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEE
Q 011669          214 VVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (480)
Q Consensus       214 ~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  291 (480)
                      ...  .++..++.         +|    .++++++++    +++++|++++++|++|.+.++++|+++|+++|++||+++
T Consensus       157 ~~~~~~~~~~~~~---------~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~l  219 (392)
T 3ruy_A          157 FGPMLPGIIVIPY---------GD----LEALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLF  219 (392)
T ss_dssp             CCSCCSSEEEECT---------TC----HHHHHHHCC----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEE
T ss_pred             cCCCCCCCeeeCc---------cc----HHHHHHHhc----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            222  23333322         13    678888875    479999999999999999989999999999999999999


Q ss_pred             EEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH
Q 011669          292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (480)
Q Consensus       292 I~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~  370 (480)
                      |+||+|+|||++| ..+..+..++.||++||||++++| +|+||+++++++++.+....+..+++.|+++++++.++|+.
T Consensus       220 i~De~~~~~~~~g-~~~~~~~~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  298 (392)
T 3ruy_A          220 VADEIQTGLGRTG-KVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV  298 (392)
T ss_dssp             EEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHH
T ss_pred             EEeechhCCCccc-cchhhhccCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999 677778889999999999999999 99999999999999888777888999999999999999998


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCC
Q 011669          371 IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG  450 (480)
Q Consensus       371 i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~  450 (480)
                      ++.+++.++++++.+++++.|+++  ..+.+..+++.|.++++.+..          ....+.+.|+++||++.+++  .
T Consensus       299 ~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~g~~~~~~~~~----------~~~~l~~~l~~~gi~v~~~~--~  364 (392)
T 3ruy_A          299 LEEEKLTERSLQLGEKLVGQLKEI--DNPMITEVRGKGLFIGIELNE----------PARPYCEQLKAAGLLCKETH--E  364 (392)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHTTC--CCTTEEEEEEETTEEEEEESS----------CSHHHHHHHHTTTEECCCBT--T
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHh--cCCCceEEEeeeeEEEEEEcc----------hHHHHHHHHHHCCcEEecCC--C
Confidence            877788899999999999988776  235677788889999988632          13568888999999999876  6


Q ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          451 NVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       451 ~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +++||+|++.+|++++++++++|+++++
T Consensus       365 ~~iRi~~~~~~~~~~i~~~~~~l~~~l~  392 (392)
T 3ruy_A          365 NVIRIAPPLVISEEDLEWAFQKIKAVLS  392 (392)
T ss_dssp             TEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence            8999999999999999999999999873

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=100.00  E-value=3.9e-52  Score=424.05  Aligned_cols=374  Identities=32%  Similarity=0.539  Sum_probs=323.6

Q ss_pred             ccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC
Q 011669           78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN  157 (480)
Q Consensus        78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~  157 (480)
                      +...|+++++|+|+++||.+|++||||.++.+.+++||+||+|.+++.+++.+..+....+.++...+++++|++.++  
T Consensus        18 ~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--   95 (406)
T 4adb_A           18 YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--   95 (406)
T ss_dssp             CCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSS--
T ss_pred             cCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCC--
Confidence            345689999999999999999999999999999999999999999999999887666566778899999999999995  


Q ss_pred             CCEEEEeCCHHHHHHHHHHHHHhh------cCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcC
Q 011669          158 LKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYR  229 (480)
Q Consensus       158 ~~~v~f~~sGseA~~~Alk~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~  229 (480)
                      .++++|++||+||++.|+++++.+      +++++||+++++||+....+...++...+......  .++..++.+    
T Consensus        96 ~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  171 (406)
T 4adb_A           96 ADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN----  171 (406)
T ss_dssp             CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT----
T ss_pred             CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC----
Confidence            458999999999999999988765      67789999999999999988888775544433322  234444322    


Q ss_pred             CCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc
Q 011669          230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (480)
Q Consensus       230 ~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~  309 (480)
                           |    .++|+++++    +++++|+++|++++||.+.++.+++++|.++|++||+++|+||+|+||+++| ..++
T Consensus       172 -----d----~~~l~~~l~----~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~  237 (406)
T 4adb_A          172 -----D----INSASALID----DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG-ELYA  237 (406)
T ss_dssp             -----C----HHHHHTTCS----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSH
T ss_pred             -----c----HHHHHHHhc----CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhHH
Confidence                 2    567777664    4799999999999999888899999999999999999999999999999999 6667


Q ss_pred             ccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011669          310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE  389 (480)
Q Consensus       310 ~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~  389 (480)
                      ++..++.||++||||++++|+|+||+++++++++.+....+..++++|+++++++.++|+.++++++.++++++++++++
T Consensus       238 ~~~~~~~~d~~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~  317 (406)
T 4adb_A          238 YMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVE  317 (406)
T ss_dssp             HHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCEEEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            77789999999999999999999999999999999888778899999999999999999988778899999999999999


Q ss_pred             HHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHH
Q 011669          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       390 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~  469 (480)
                      .|+++...++.+..+++.|+++++++....      ......+.+.|+++||++.+++  .+++||+|++.+|+++++++
T Consensus       318 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~--~~~iRi~~~~~~~~e~i~~~  389 (406)
T 4adb_A          318 RLNTINHRYGLFSEVRGLGLLIGCVLNADY------AGQAKQISQEAAKAGVMVLIAG--GNVVRFAPALNVSEEEVTTG  389 (406)
T ss_dssp             HHHHHHHHHCCEEEEEEETTEEEEEECTTT------TTCHHHHHHHHHHTTEECEESS--TTEEEECCCTTCCHHHHHHH
T ss_pred             HHHHHHHhCCCceEEEEEEEEEEEEEeCCc------HHHHHHHHHHHHHCCcEEeecC--CCeEEEECCCCCCHHHHHHH
Confidence            999987777777888999999999985421      0124678889999999999876  68999999999999999999


Q ss_pred             HHHHHHHHhh
Q 011669          470 VDVMDYSLSK  479 (480)
Q Consensus       470 l~~l~~~l~~  479 (480)
                      +++|++++++
T Consensus       390 ~~~l~~~l~~  399 (406)
T 4adb_A          390 LDRFAAACEH  399 (406)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=100.00  E-value=1e-48  Score=397.97  Aligned_cols=370  Identities=34%  Similarity=0.563  Sum_probs=306.8

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL  158 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~  158 (480)
                      ...|+.+.+++|+++||.+|++||||.+++++..+||++|+|.+|+.+++++..+....|..+...+++++|+++++  .
T Consensus        20 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~   97 (397)
T 2ord_A           20 SRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF--G   97 (397)
T ss_dssp             CCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT--S
T ss_pred             cCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC--C
Confidence            35689999999999999999999999999999999999999999999999886554444567888999999999985  5


Q ss_pred             CEEEEeCCHHHHHHHHHHHHHhh-----cCCceEEEEcCCcccccccccccccCCCccccc-cC-CCeeEecCCCCcCCC
Q 011669          159 KVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV-VQ-TGVHHALNPDPYRGV  231 (480)
Q Consensus       159 ~~v~f~~sGseA~~~Alk~ar~~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~p~~~~~~  231 (480)
                      ++++|++||+||++.|++.++.+     +++++||+++++||+....++...+...++... +. .++..++.       
T Consensus        98 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------  170 (397)
T 2ord_A           98 GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------  170 (397)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------
T ss_pred             CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------
Confidence            78999999999999999988754     466789999999999988666555432111111 11 23333332       


Q ss_pred             CCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc
Q 011669          232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE  311 (480)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~  311 (480)
                        +|    .++|++.++    +++++|+++|++|++|.+.++.+++++|.++|++||+++|+||+|+||+++| ..+.++
T Consensus       171 --~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~~  239 (397)
T 2ord_A          171 --NN----VEDLRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-KLFAYQ  239 (397)
T ss_dssp             --TC----HHHHHHHCC----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSHHH
T ss_pred             --CC----HHHHHHHhh----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc-cchhhh
Confidence              13    577888775    3789999999999999867788999999999999999999999999999988 555556


Q ss_pred             ccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011669          312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL  391 (480)
Q Consensus       312 ~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L  391 (480)
                      .++..||++||||++++|+|+||++++++++ .+....+..+++.|+++++++.++|+.++++++.++++++++++++.|
T Consensus       240 ~~~~~~d~~s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L  318 (397)
T 2ord_A          240 KYGVVPDVLTTAKGLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL  318 (397)
T ss_dssp             HHTCCCSEEEECGGGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred             hhCCCCCeeeeccccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            6677899999999999999999999999877 666545678899999999999999998877788999999999999999


Q ss_pred             HHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHH
Q 011669          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       392 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~  471 (480)
                      +++...++.+..+++.|.++++++....        ....+.+.|+++||++.+++  .+++||+|++..++++++++++
T Consensus       319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~~~--~~~iRis~~~~~~~e~i~~~~~  388 (397)
T 2ord_A          319 QEMKEEYDVVADVRGMGLMIGIQFREEV--------SNREVATKCFENKLLVVPAG--NNTIRFLPPLTVEYGEIDLAVE  388 (397)
T ss_dssp             HHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHH
T ss_pred             HHHHHhCCceEEEEEEeEEEEEEECChH--------HHHHHHHHHHHCCCEEccCC--CCEEEEECCcCCCHHHHHHHHH
Confidence            8875456766667888999999874321        14568888999999999875  5789999999999999999999


Q ss_pred             HHHHHHhh
Q 011669          472 VMDYSLSK  479 (480)
Q Consensus       472 ~l~~~l~~  479 (480)
                      +|++++++
T Consensus       389 ~l~~~l~~  396 (397)
T 2ord_A          389 TLKKVLQG  396 (397)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99999875

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=100.00  E-value=4.7e-48  Score=392.71  Aligned_cols=386  Identities=30%  Similarity=0.496  Sum_probs=310.8

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC
Q 011669           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN  140 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~  140 (480)
                      +++++..++|++.....+...|+.+.+++|+++||.+|+.||||.++.+++.+||++|+|.+|+.+++.+..+....|..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~   86 (395)
T 1vef_A            7 EDWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT   86 (395)
T ss_dssp             --CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCC
T ss_pred             HHHHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCC
Confidence            45666666775411012335688999999999999999999999999998999999999999999999876554445668


Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc-cC-CC
Q 011669          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV-VQ-TG  218 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~-~~-~g  218 (480)
                      +...+++++|+++++.+.++|++++||+||++.+++.++.++++++||+++++||+.....+...+........ +. .+
T Consensus        87 ~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~  166 (395)
T 1vef_A           87 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEP  166 (395)
T ss_dssp             HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSC
T ss_pred             HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCC
Confidence            88999999999999766789999999999999999987755678899999999999887666554432111100 10 12


Q ss_pred             eeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc
Q 011669          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA  298 (480)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t  298 (480)
                      +..++.         .|    .++++++++    +++++|+++|+++++|.+.++++++++|.++|++||+++|+||+|+
T Consensus       167 ~~~~~~---------~d----~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~  229 (395)
T 1vef_A          167 VEFIPY---------ND----VEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT  229 (395)
T ss_dssp             EEEECT---------TC----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             eeEeCC---------Cc----HHHHHHHhc----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            222221         13    577888775    3689999999999999888899999999999999999999999999


Q ss_pred             CccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHH
Q 011669          299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN  378 (480)
Q Consensus       299 gfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~  378 (480)
                      ||++.| ..+.++..++.+|+++|||.+++|+|+||+++++++++.+....+..+++.|+++++++.++|+.+.++++.+
T Consensus       230 ~~~~~g-~~~~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~  308 (395)
T 1vef_A          230 GMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWE  308 (395)
T ss_dssp             TTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHH
T ss_pred             CCccCC-chhHhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            998888 5555666788899999999999999999999999998888765567889999999999999999887777888


Q ss_pred             HHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcCCCEEEEeC
Q 011669          379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFYGNVFRITP  457 (480)
Q Consensus       379 ~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~iRi~p  457 (480)
                      +++++.+++++.|+++.  .+.+..+++.|.++++++..+          ...+.+.|+ ++||++.+++  .+++||++
T Consensus       309 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~~gi~v~~~~--~~~iRi~~  374 (395)
T 1vef_A          309 RAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEK----------AAPYIARLEKEHRVLALQAG--PTVIRFLP  374 (395)
T ss_dssp             HHHHHHHHHHHHHHTSC--CTTEEEEEEETTEEEEEESSC----------SHHHHHHHHHHHCEECEESS--TTEEEECC
T ss_pred             HHHHHHHHHHHHHHHhh--cCceEEEEEEEEEEEEEEcCh----------HHHHHHHHHHHCCeEEecCC--CCEEEEeC
Confidence            89999999988887752  234455677888999987421          356788888 8999999864  57999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 011669          458 PLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ++.++++++++++++|+++++
T Consensus       375 ~~~~~~~~i~~~~~~l~~~l~  395 (395)
T 1vef_A          375 PLVIEKEDLERVVEAVRAVLA  395 (395)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999998863

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=100.00  E-value=9.6e-46  Score=372.80  Aligned_cols=360  Identities=36%  Similarity=0.605  Sum_probs=294.0

Q ss_pred             CCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC
Q 011669           80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      +.|+.+.+|+|+++||.+|+.||||.+|.+.+.+||.+|++.+++.+++.+..+....|+++...+++++|+++++.+ +
T Consensus         9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~-~   87 (375)
T 2eh6_A            9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTE-G   87 (375)
T ss_dssp             CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSC-E
T ss_pred             CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCC-C
Confidence            458899999999999999999999999998889999999999999999987644434566778899999999998642 8


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhc-----CCceEEEEcCCcccccccccccccCCCccccc-c-CCCeeEecCCCCcCCCC
Q 011669          160 VVFFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNV-V-QTGVHHALNPDPYRGVF  232 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~-~-~~g~~~~~~p~~~~~~~  232 (480)
                      ++++++||++|++.++++++.+.     ++++|++.+++||+....+....+...+.... + ..++..++.+       
T Consensus        88 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  160 (375)
T 2eh6_A           88 KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLN-------  160 (375)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTT-------
T ss_pred             eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCc-------
Confidence            89999999999999999865443     44899999999999988777665433221111 1 1233333321       


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA  312 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~  312 (480)
                        |    .++|+++++    +++++|+++|+++++|.+.++++++++|.++|++||+++|+||+|++|++++ ..+..+.
T Consensus       161 --d----~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~  229 (375)
T 2eh6_A          161 --D----IDSVYKLLD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-EFYAYQH  229 (375)
T ss_dssp             --C----HHHHHTTCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGGGG
T ss_pred             --h----HHHHHHHhc----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cchhhhh
Confidence              2    567776664    3789999999999999998899999999999999999999999999999887 4445666


Q ss_pred             cCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011669          313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       313 ~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~  392 (480)
                      .+..+|+++|||.+++|+|+||+++++++++.+....+..+++.++++++++.++|+.++  ++.++++++++++++.|+
T Consensus       230 ~~~~~d~~s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~  307 (375)
T 2eh6_A          230 FNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLK  307 (375)
T ss_dssp             GTCCCSEEEECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            777899999999999999999999999998888775567888999999999999998765  677888888888888887


Q ss_pred             HhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHH
Q 011669          393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV  472 (480)
Q Consensus       393 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~  472 (480)
                      ++    +. ..+++.|.++++++..+          ...+.+.|+++||.+.+++  .+++||++++..+++++++++++
T Consensus       308 ~~----~~-~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~gi~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~  370 (375)
T 2eh6_A          308 EL----GK-GKVKGRGLMLGLELERE----------CKDYVLKALEKGLLINCTA--GKVLRFLPPLIIQKEHIDRAISV  370 (375)
T ss_dssp             HT----TS-SEEEEETTEEEEECSSC----------CHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHH
T ss_pred             HH----hc-CCceEEEEEEEEEEcCc----------HHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHH
Confidence            65    22 34567889999887321          2467888889999998864  57899999999999999999999


Q ss_pred             HHHHH
Q 011669          473 MDYSL  477 (480)
Q Consensus       473 l~~~l  477 (480)
                      |++++
T Consensus       371 l~~~l  375 (375)
T 2eh6_A          371 LREIL  375 (375)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98763

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=3e-41  Score=345.88  Aligned_cols=362  Identities=12%  Similarity=0.060  Sum_probs=265.4

Q ss_pred             CCCeEEEeeeccEEEeCC--CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC--
Q 011669           80 SKPLNVVDGKMQYLFDEN--GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--  155 (480)
Q Consensus        80 ~~p~~~~~g~G~~l~d~d--G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~--  155 (480)
                      ..++...+|+|+++||.+  |++||||..|..  . .++||+|++|+.+++++..+....+..+...++++++++.++  
T Consensus        40 ~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~~--~-~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~  116 (421)
T 3l8a_A           40 FTTRPDRLNQFTYKWKTSENNPELLQMWVADM--D-FLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYA  116 (421)
T ss_dssp             CSCCCCCTTTTBTTTGGGTTCTTCEECCSSCC--C-SCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred             CCcccccCCCCCccccccCCCCCeeecccCCC--C-CCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            346778899999999999  899999977643  3 368999999999999875443333345667788888888765  


Q ss_pred             CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC-cCCCCCC
Q 011669          156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFGA  234 (480)
Q Consensus       156 ~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~~~~~~~  234 (480)
                      .+.++|+|++||+||++.|++.+..  ++++||++.++||+..........             ..+.+|.. ..+.|..
T Consensus       117 ~~~~~v~~~~g~~ea~~~a~~~~~~--~gd~Vi~~~~~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~  181 (421)
T 3l8a_A          117 VVKEDILFIDGVVPAISIALQAFSE--KGDAVLINSPVYYPFARTIRLNDH-------------RLVENSLQIINGRFEI  181 (421)
T ss_dssp             CCGGGEEEESCHHHHHHHHHHHHSC--TEEEEEEEESCCHHHHHHHHHTTE-------------EEEEEECEEETTEEEC
T ss_pred             CCHHHEEEcCCHHHHHHHHHHHhcC--CCCEEEECCCCcHHHHHHHHHCCC-------------EEEeccccccCCCeee
Confidence            4567899999999999999998753  568899999999997766554322             11211111 0111212


Q ss_pred             ChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc----
Q 011669          235 DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF----  310 (480)
Q Consensus       235 d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~----  310 (480)
                      |    +++|+++++.   .++++|++++++|++|.+ ++++++++|+++|++||+++|+||+|++|+++|.....+    
T Consensus       182 d----~~~le~~i~~---~~~~~vil~~p~nptG~~-~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  253 (421)
T 3l8a_A          182 D----FEQLEKDIID---NNVKIYLLCSPHNPGGRV-WDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLD  253 (421)
T ss_dssp             C----HHHHHHHHHH---TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred             C----HHHHHHHhhc---cCCeEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcC
Confidence            3    6788888863   378999999999999955 588889999999999999999999999999888322222    


Q ss_pred             -cccCCCcceeeeccccc-cCccccccccC-HHHHHhhcCCC-ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 011669          311 -EAHGVVPDIVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY  386 (480)
Q Consensus       311 -~~~~~~pDivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~-~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~  386 (480)
                       +..+..+++.++||+++ +|+|+||++++ +++++.+.... ...++++|+++++++.++|+..  +++.+++.+..+.
T Consensus       254 ~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~--~~~~~~~~~~~~~  331 (421)
T 3l8a_A          254 ASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG--KPWLEELKTVIEG  331 (421)
T ss_dssp             TTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred             chhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHH
Confidence             22355677889999998 89999999998 89988887654 3456689999999999999853  3334444444444


Q ss_pred             HHHHHHHhHHhcCceeeEeccceeEE-EEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCC
Q 011669          387 LKERLTALKDKYGIIGDVRGRGFLLG-VEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLC  460 (480)
Q Consensus       387 l~~~L~~l~~~~~~~~~v~g~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~  460 (480)
                      +++.|.+..++++.+..+++.|.++. +++.....       ....+.+.|++ +||++.++..+    .+++||+++  
T Consensus       332 ~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--  402 (421)
T 3l8a_A          332 NIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAI-------AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--  402 (421)
T ss_dssp             HHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTC-------CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--
T ss_pred             HHHHHHHHHHhCCCceEeCCCeeEEEEEeccccCC-------CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--
Confidence            44444443333355667777777664 77743111       12457777865 59999986533    479999977  


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 011669          461 FTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       461 ~t~~~id~~l~~l~~~l~  478 (480)
                      +++++|++++++|+++++
T Consensus       403 ~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          403 TPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             SCHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            699999999999999875

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=1.7e-37  Score=318.68  Aligned_cols=368  Identities=14%  Similarity=0.086  Sum_probs=273.4

Q ss_pred             CCHHHHHHHHhhhcCCccccccCCCeEEE-eeeccEEEeCCCCEEEeccCCcccccCC-CCCHHHHHHHHHHHHhccccc
Q 011669           58 PSADEILAKRKTFLSPSLFHLYSKPLNVV-DGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQHST  135 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~~~  135 (480)
                      ++++++.++..+....++.  ++.+..+. +++|+++|| ||++||||.+|.   ++| |+||+|.+++.+++.+.....
T Consensus        25 ~~~~~~~~~~~~~~~~g~~--~r~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~lg~~~~~~v~~a~~~~~~~~~~~~   98 (427)
T 2w8t_A           25 SKFDGLIAERQKLLDSGVT--DPFAIVMEQVKSPTEAVI-RGKDTILLGTYN---YMGMTFDPDVIAAGKEALEKFGSGT   98 (427)
T ss_dssp             GGGHHHHHHHHHHHHTTCC--CTTCCCCSEEEETTEEEE-TTEEEEECSCCC---TTCGGGCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHHHHHcCCc--ceeeeeccccCCCceEee-CCceEEEEECcc---cccCCCCHHHHHHHHHHHHHhCCCC
Confidence            3566777777776655511  23345677 999999999 999999999884   478 799999999999998743211


Q ss_pred             c-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCc
Q 011669          136 V-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW  210 (480)
Q Consensus       136 ~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  210 (480)
                      .     .+.++...+++++|+++++  .+.+++++||++||..+++.+.  .+++.|++. ..+|+.....+...+    
T Consensus        99 ~~~~~~~G~~~~~~~l~~~la~~~g--~~~~i~~~sGs~a~~~al~~l~--~~gd~vl~~-~~~h~~~~~~~~~~g----  169 (427)
T 2w8t_A           99 CGSRMLNGTFHDHMEVEQALRDFYG--TTGAIVFSTGYMANLGIISTLA--GKGEYVILD-ADSHASIYDGCQQGN----  169 (427)
T ss_dssp             CSCTTTTCCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHHS--CTTCEEEEE-TTCCHHHHHHHHHSC----
T ss_pred             cccccccCCcHHHHHHHHHHHHHhC--CCceEEecCcHHHHHHHHHHhc--CCCCEEEEC-CcccHHHHHHHHHcC----
Confidence            1     1246788999999999995  3578899999999999998753  244455554 555565554444332    


Q ss_pred             cccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669          211 KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (480)
Q Consensus       211 ~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  290 (480)
                              ...+.+|.       +|    .++|+++++...++++++|+++++++++|.+.+    +++|+++|++||++
T Consensus       170 --------~~~~~~~~-------~d----~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~  226 (427)
T 2w8t_A          170 --------AEIVRFRH-------NS----VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAM  226 (427)
T ss_dssp             --------SEEEEECT-------TC----HHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCE
T ss_pred             --------CeeEEeCC-------CC----HHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCE
Confidence                    22222221       23    678888887532227899999999999999876    99999999999999


Q ss_pred             EEEcccccCc--cccCCCcccccccCCCcc----eeeeccccccCccccccccCHHHHHhhcCCC--ccccCCCcHHHHH
Q 011669          291 CIADEVQAGF--ARTGSHFWGFEAHGVVPD----IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTA  362 (480)
Q Consensus       291 lI~DEv~tgf--gr~G~~~~~~~~~~~~pD----ivt~sK~~g~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~a  362 (480)
                      +|+||+|+++  +++| .. ..+.+++.+|    +.||||++|  .+.||+++++++++.+....  +..+++.|++.++
T Consensus       227 li~Dea~~~~~~~~~g-~~-~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~a  302 (427)
T 2w8t_A          227 VLVDEAHSMGFFGPNG-RG-VYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVA  302 (427)
T ss_dssp             EEEECTTTTTTSSTTS-CC-HHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHH
T ss_pred             EEEECCccccccCCCC-Cc-hHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHH
Confidence            9999999974  3334 22 2344566555    668999996  45599999999988887642  3356678899999


Q ss_pred             HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcC
Q 011669          363 AGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMG  440 (480)
Q Consensus       363 aa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G  440 (480)
                      ++.++|+.+++ ++..++++++++++++.|+++  .+...  ..+ .|.++++.+.        .......+.+.|+++|
T Consensus       303 a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~~~~~~--------~~~~~~~l~~~L~~~G  370 (427)
T 2w8t_A          303 TATTSIRKLMTAHEKRERLWSNARALHGGLKAM--GFRLG--TETCDSAIVAVMLE--------DQEQAAMMWQALLDGG  370 (427)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH--TCEES--CSSCCSSEEEEEES--------SHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCccc--CCCCCCCEEEEEEC--------CHHHHHHHHHHHHHCC
Confidence            99999998866 678889999999999999886  33221  133 6788888872        2334677889999999


Q ss_pred             ceeeccCcC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          441 VLVGKGGFY-----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       441 v~v~~~~~~-----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |++.++..+     .+++||+++..+|++++++++++|++++++
T Consensus       371 i~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~  414 (427)
T 2w8t_A          371 LYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA  414 (427)
T ss_dssp             EECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            999886432     258999999989999999999999998764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=1.2e-36  Score=307.60  Aligned_cols=360  Identities=11%  Similarity=0.040  Sum_probs=258.3

Q ss_pred             eEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC--CCCCE
Q 011669           83 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--GNLKV  160 (480)
Q Consensus        83 ~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~--~~~~~  160 (480)
                      ++..+|+|+++||.+|++||||..|...   .+.+|+|.+++.+++.+..+.......+...++++.+++.++  .+.++
T Consensus        11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~~---~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~   87 (391)
T 3dzz_A           11 HVPKRQGNSIKWGVLKEKELPMWIAEMD---FKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW   87 (391)
T ss_dssp             SCCCCCTTBTTTTTCCTTCEECCSSCCS---SCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred             hhccCCCCccceeccCCCceeccccCCC---CCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence            6677899999999999999999987533   358999999999998874332222234566778888877754  45678


Q ss_pred             EEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCc-CCCCCCChHHH
Q 011669          161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPY-RGVFGADGEMY  239 (480)
Q Consensus       161 v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~-~~~~~~d~~~~  239 (480)
                      |+|++||++|++.+++.+.  .+++.|++.+++||+........             |...+.+|..+ .+.|..|    
T Consensus        88 i~~~~g~~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~d----  148 (391)
T 3dzz_A           88 CVFASGVVPAISAMVRQFT--SPGDQILVQEPVYNMFYSVIEGN-------------GRRVISSDLIYENSKYSVN----  148 (391)
T ss_dssp             EEEESCHHHHHHHHHHHHS--CTTCEEEECSSCCHHHHHHHHHT-------------TCEEEECCCEEETTEEECC----
T ss_pred             EEECCCHHHHHHHHHHHhC--CCCCeEEECCCCcHHHHHHHHHc-------------CCEEEEeeeeecCCceeec----
Confidence            9999999999999999864  36789999999999876655433             22223332211 1122223    


Q ss_pred             HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC-CCcc
Q 011669          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG-VVPD  318 (480)
Q Consensus       240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~-~~pD  318 (480)
                      .++++++++.   .++++|+++.+++++|.+. +++.+++|.++|++||+++|+||+|++|++.|.....+...+ ..+|
T Consensus       149 ~~~l~~~l~~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d  224 (391)
T 3dzz_A          149 WADLEEKLAT---PSVRMMVFCNPHNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKN  224 (391)
T ss_dssp             HHHHHHHHTS---TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGG
T ss_pred             HHHHHHHHhc---cCceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccC
Confidence            6788888862   3678888888889999764 677799999999999999999999999988773333333333 2267


Q ss_pred             ----eeeeccccc-cCccccccccC-HHHHHhhcCCCc-cccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Q 011669          319 ----IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKE  389 (480)
Q Consensus       319 ----ivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~~-~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~  389 (480)
                          +.++||.+| +|+|+||++++ +++++.+..... ..+++.|+++++++.++|+...+  ++..++.+++.+++.+
T Consensus       225 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~  304 (391)
T 3dzz_A          225 WVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYARE  304 (391)
T ss_dssp             GEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence                557899998 89999999998 888888765432 45678899999999999875321  2344444555555555


Q ss_pred             HHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCH
Q 011669          390 RLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTK  463 (480)
Q Consensus       390 ~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~  463 (480)
                      .|++.   ++.+....+. +.++++.+....       .....+.+.|+ ++||++.++..+    .+++||+++  +++
T Consensus       305 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~  372 (391)
T 3dzz_A          305 FLAKE---VPEVKVLDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPK  372 (391)
T ss_dssp             HHHHH---CTTSEECCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCH
T ss_pred             HHHhh---CCCcEEeccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCH
Confidence            55442   3333333344 445567764311       12466888885 899999987543    378999966  699


Q ss_pred             HHHHHHHHHHHHHHhhC
Q 011669          464 EDADYLVDVMDYSLSKM  480 (480)
Q Consensus       464 ~~id~~l~~l~~~l~~~  480 (480)
                      +++++++++|+++++++
T Consensus       373 ~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          373 ELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998763

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=1.4e-35  Score=300.66  Aligned_cols=350  Identities=16%  Similarity=0.170  Sum_probs=261.4

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCC-CCCHHHHHHHHHHHHhcccccc-----ccCChHHHHHHHHHHH
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALAS  152 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~~~~-----~~~~~~~~~l~e~L~~  152 (480)
                      ++.|..+++++|.|++| +|++||||.++   .++| |++|++.+++.+++.+..+...     .+..+...+++++|++
T Consensus        24 ~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~   99 (399)
T 3tqx_A           24 YKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISE   99 (399)
T ss_dssp             CCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHH
T ss_pred             ccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHH
Confidence            45577889999999999 99999999988   4578 7999999999999987543221     1245678999999999


Q ss_pred             hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                      +++.  +..++++||++|++.+++.+..  +++.|++..++|.+ ........+            ...+.+|.      
T Consensus       100 ~~~~--~~~i~~~sGt~a~~~~l~~~~~--~gd~v~~~~~~~~~-~~~~~~~~g------------~~~~~~~~------  156 (399)
T 3tqx_A          100 FLGT--DDTILYSSCFDANGGLFETLLG--PEDAIISDELNHAS-IIDGIRLCK------------AQRYRYKN------  156 (399)
T ss_dssp             HHTC--SEEEEESCHHHHHHTTHHHHCC--TTCEEEEETTCCHH-HHHHHHSCC------------SEEEEECT------
T ss_pred             HHCC--CcEEEECchHHHHHHHHHHhcC--CCCEEEECCcccHH-HHHHHHHcC------------CceeEeCC------
Confidence            9864  3567778899999999986532  55667666666544 333333332            22222221      


Q ss_pred             CCChHHHHHHHHHHHHccCC--CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-Cc-cccCCCcc
Q 011669          233 GADGEMYAKDVQDLIDFGTS--GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFW  308 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gf-gr~G~~~~  308 (480)
                       .|    .++++++++....  .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|. |+ ++.+ . .
T Consensus       157 -~d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~-~  225 (399)
T 3tqx_A          157 -NA----MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENG-R-G  225 (399)
T ss_dssp             -TC----TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTS-C-C
T ss_pred             -CC----HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-C-c
Confidence             12    3467777764211  27899999999999999876    9999999999999999999994 54 4444 1 2


Q ss_pred             cccccCC--Cccee--eeccccccCccccccccCHHHHHhhcCCCc--cccCCCcHHHHHHHHHHHHHh-h-hhHHHHHH
Q 011669          309 GFEAHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVI-Q-KDKLQNNA  380 (480)
Q Consensus       309 ~~~~~~~--~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~~--~~t~~~~~~~~aaa~a~L~~i-~-~~~~~~~~  380 (480)
                      ..+.+++  .+|++  ++||+++ |++.||+++++++++.+.....  ..+.+.+++.++++.++++.+ + .++..+++
T Consensus       226 ~~~~~~~~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  304 (399)
T 3tqx_A          226 TPEYCGVADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQL  304 (399)
T ss_dssp             HHHHHTCTTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             hHHhhCCCCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            2445555  67888  8999999 6788999999999988765322  234467899999999999877 3 25677888


Q ss_pred             HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEE
Q 011669          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRI  455 (480)
Q Consensus       381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi  455 (480)
                      +++.+++++.|+++  .+.   .+++.|.++++.+.        .......+.+.|+++||++.++..     ..+++||
T Consensus       305 ~~~~~~l~~~L~~~--g~~---~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi  371 (399)
T 3tqx_A          305 QENSRYFRAGMEKL--GFQ---LVPGNHPIIPVMLG--------DAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRV  371 (399)
T ss_dssp             HHHHHHHHHHHHHH--TCC---BCCCSSSEEEEEEE--------CHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHc--CCC---cCCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEE
Confidence            88888888888876  222   23677888888873        233467788999999999986532     1358999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          456 TPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      +++..+|++++++++++|+++++++
T Consensus       372 ~~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          372 QMSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             EeecCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998763

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=100.00  E-value=2e-35  Score=300.13  Aligned_cols=351  Identities=15%  Similarity=0.187  Sum_probs=260.8

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhccccc--ccc---CChHHHHHHHHHHH
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST--VLY---LNHAIADFAEALAS  152 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~--~~~---~~~~~~~l~e~L~~  152 (480)
                      ++.|..+.+++|+++||.||++||||.+|   +++|| ++|+|.+++.+++.+..+..  ..|   ..+...+++++|++
T Consensus        25 ~~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~  101 (401)
T 1fc4_A           25 FKEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAA  101 (401)
T ss_dssp             CCCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHH
T ss_pred             eeeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHH
Confidence            45688899999999999999999999988   35886 89999999999988743321  122   25778899999999


Q ss_pred             hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                      +++.+  ..+++++|++|++.+++.+..  +++.|++..+. |+.....+...            |+..+.++.      
T Consensus       102 ~~g~~--~~i~~~sGs~a~~~~~~~~~~--~gd~v~~~~~~-~~~~~~~~~~~------------g~~~~~~~~------  158 (401)
T 1fc4_A          102 FLGME--DAILYSSCFDANGGLFETLLG--AEDAIISDALN-HASIIDGVRLC------------KAKRYRYAN------  158 (401)
T ss_dssp             HHTCS--EEEEESCHHHHHHTTHHHHCC--TTCEEEEETTC-CHHHHHHHHTS------------CSEEEEECT------
T ss_pred             HhCCC--cEEEeCChHHHHHHHHHHHcC--CCCEEEEcchh-HHHHHHHHHHc------------CCceEEECC------
Confidence            99654  567888999999999887632  44556655554 54443333322            333333331      


Q ss_pred             CCChHHHHHHHHHHHHccCC--CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-Ccc-ccCCCcc
Q 011669          233 GADGEMYAKDVQDLIDFGTS--GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFA-RTGSHFW  308 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfg-r~G~~~~  308 (480)
                       .|    .++++++++....  .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|. |+. ++| ..+
T Consensus       159 -~d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g-~~~  228 (401)
T 1fc4_A          159 -ND----MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENG-RGS  228 (401)
T ss_dssp             -TC----HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CCH
T ss_pred             -CC----HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCC-Ccc
Confidence             23    5677777763211  15789999999999998876    9999999999999999999994 873 556 322


Q ss_pred             cccccCCC--ccee--eeccccccCccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHH
Q 011669          309 GFEAHGVV--PDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAH  381 (480)
Q Consensus       309 ~~~~~~~~--pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~  381 (480)
                       .+..++.  .|++  ++||.++++. .||+++++++++.+....  +..+++.|+++++++.++|+.+++ +++.++++
T Consensus       229 -~~~~~~~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  306 (401)
T 1fc4_A          229 -HEYCDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLW  306 (401)
T ss_dssp             -HHHTTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             -HHHcCCCcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence             2223443  4676  8999997654 499999999988876533  334678899999999999998754 56788888


Q ss_pred             HHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----CCEEEEe
Q 011669          382 VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----GNVFRIT  456 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~  456 (480)
                      ++.+++++.|+++  .+..   ..+.|.++++++..        ......+.+.|.++||++.++..+     .+++||+
T Consensus       307 ~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~  373 (401)
T 1fc4_A          307 ANARQFREQMSAA--GFTL---AGADHAIIPVMLGD--------AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQ  373 (401)
T ss_dssp             HHHHHHHHHHHHT--TCCB---CCSSSSEEEEEEEC--------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHc--CCcc---cCCCCCEEEEEcCC--------hHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEE
Confidence            8888888888875  3332   24678889988732        234567888999999999886432     3589999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          457 PPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       457 p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ++..+|++++++++++|+++++++
T Consensus       374 ~~~~~~~~~i~~~~~~l~~~~~~~  397 (401)
T 1fc4_A          374 MSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             eCCCCCHHHHHHHHHHHHHHHHHh
Confidence            998899999999999999998753

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=1.3e-35  Score=298.77  Aligned_cols=353  Identities=14%  Similarity=0.068  Sum_probs=246.9

Q ss_pred             EEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC--CCCCEE
Q 011669           84 NVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--GNLKVV  161 (480)
Q Consensus        84 ~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~--~~~~~v  161 (480)
                      ...+|+|+++||.||++||||.+|..  .+ +.+|+|.+|+.+++.+..+.......+....+++.+.+.++  .+.++|
T Consensus         8 ~~~~~~g~~~~d~~g~~~idl~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i   84 (377)
T 3fdb_A            8 EDLRARNTMKWTRYGQGVLPLWVAES--DF-STCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWI   84 (377)
T ss_dssp             HHHHHTCCHHHHSSCTTSEECCSSCC--CS-CCCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred             HHhcCCCCceeeccCCCeeeecccCC--CC-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHE
Confidence            34589999999999999999998853  33 48999999999999863222111114455555555554432  456789


Q ss_pred             EEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHH
Q 011669          162 FFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK  241 (480)
Q Consensus       162 ~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~  241 (480)
                      +|++||++|++.+++.+..  +++.|++..++||+....+.....           .+..++....      .|    .+
T Consensus        85 ~~t~g~~~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~------~d----~~  141 (377)
T 3fdb_A           85 FPIPDVVRGLYIAIDHFTP--AQSKVIVPTPAYPPFFHLLSATQR-----------EGIFIDATGG------IN----LH  141 (377)
T ss_dssp             EEESCHHHHHHHHHHHHSC--TTCCEEEEESCCTHHHHHHHHHTC-----------CEEEEECTTS------CC----HH
T ss_pred             EEeCChHHHHHHHHHHhcC--CCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEccCCCC------CC----HH
Confidence            9999999999999997643  568899999999987765444322           1222222111      12    67


Q ss_pred             HHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC-CCcccc---cccCCCc
Q 011669          242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-SHFWGF---EAHGVVP  317 (480)
Q Consensus       242 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G-~~~~~~---~~~~~~p  317 (480)
                      ++++.++.    ++++++++..+|++|.+. +.+.+++|.++|++||+++|+||+|++|+++| .....+   +..+..+
T Consensus       142 ~l~~~l~~----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i  216 (377)
T 3fdb_A          142 DVEKGFQA----GARSILLCNPYNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCI  216 (377)
T ss_dssp             HHHHHHHT----TCCEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEE
T ss_pred             HHHHHhcc----CCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEE
Confidence            88888874    345555555588888765 77789999999999999999999999998776 222222   2233446


Q ss_pred             ceeeeccccc-cCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHH
Q 011669          318 DIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       318 Divt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~  393 (480)
                      ++.++||.+| +|+|+||++. ++++++.+.......+++.|+++++++.++|+..++  ++..++++++.+++.+.|++
T Consensus       217 ~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  296 (377)
T 3fdb_A          217 TITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPK  296 (377)
T ss_dssp             EEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6778999997 7999998776 788888887766667889999999999999985322  23444455555555555544


Q ss_pred             hHHhcCceeeEeccce-eEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC----CCEEEEeCCCCCCHHHHH
Q 011669          394 LKDKYGIIGDVRGRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY----GNVFRITPPLCFTKEDAD  467 (480)
Q Consensus       394 l~~~~~~~~~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~~~id  467 (480)
                      .   ++.+....+.+. ++++++......        ..+.+.|+++ ||++.++..+    .+++||+++  .++++++
T Consensus       297 ~---~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~  363 (377)
T 3fdb_A          297 R---IPGAKITPMQATYLMWIDFRDTTIE--------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLE  363 (377)
T ss_dssp             H---STTCEECCCSBCSEEEEECTTSCCC--------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHH
T ss_pred             h---CCCceEecCCeeEEEEEECcccCCC--------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHH
Confidence            2   343444444444 447777432111        2355666655 9999987543    479999966  4899999


Q ss_pred             HHHHHHHHHHhhC
Q 011669          468 YLVDVMDYSLSKM  480 (480)
Q Consensus       468 ~~l~~l~~~l~~~  480 (480)
                      +++++|+++++++
T Consensus       364 ~~l~~l~~~l~~~  376 (377)
T 3fdb_A          364 EAIDRMAKAVSHH  376 (377)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999998753

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=8.4e-35  Score=294.60  Aligned_cols=359  Identities=9%  Similarity=-0.014  Sum_probs=231.7

Q ss_pred             EEEeeeccEEEeCCCC-----EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCCh-HHHHHHHHHHHhCC--
Q 011669           84 NVVDGKMQYLFDENGR-----RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP--  155 (480)
Q Consensus        84 ~~~~g~G~~l~d~dG~-----~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~l~e~L~~~~~--  155 (480)
                      +-.+|+|+++||.+|+     +||||..+..  .+| .+|+|.+++.+++....+.......+ ...++++.+.+.++  
T Consensus         8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~~   84 (390)
T 1d2f_A            8 VDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTA   84 (390)
T ss_dssp             ----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             ccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCCC
Confidence            4468999999999998     7899977654  466 78999999999987532111111334 55566666655544  


Q ss_pred             CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC-CCCCC
Q 011669          156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGA  234 (480)
Q Consensus       156 ~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~  234 (480)
                      .+.++|++++||++|++.+++.+..  ++++|++.+++||+....+....             ...+.+|.... +.|..
T Consensus        85 ~~~~~v~~t~g~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~~  149 (390)
T 1d2f_A           85 IDSQTVVYGPSVIYMVSELIRQWSE--TGEGVVIHTPAYDAFYKAIEGNQ-------------RTVMPVALEKQADGWFC  149 (390)
T ss_dssp             CCGGGEEEESCHHHHHHHHHHHSSC--TTCEEEEEESCCHHHHHHHHHTT-------------CEEEEEECEECSSSEEC
T ss_pred             CCHHHEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCcHHHHHHHHHCC-------------CEEEEeecccCCCcccc
Confidence            4567899999999999999997643  56899999999999776554322             11122211111 12223


Q ss_pred             ChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC
Q 011669          235 DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG  314 (480)
Q Consensus       235 d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~  314 (480)
                      |    .+++++.++.   .++++|++...++++|.+ .+.+++++|.++|++||+++|+||+|++|.++|..+..+...+
T Consensus       150 d----~~~l~~~l~~---~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  221 (390)
T 1d2f_A          150 D----MGKLEAVLAK---PECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA  221 (390)
T ss_dssp             C----HHHHHHHHTS---TTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC
T ss_pred             C----HHHHHHHhcc---CCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcc
Confidence            4    6788888853   257777766668888876 4788999999999999999999999999987763222221111


Q ss_pred             CC-cc-eeeeccccc-cCccccccccC-HHHHHhhcCCCc-cccC-CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 011669          315 VV-PD-IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNY-FNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLK  388 (480)
Q Consensus       315 ~~-pD-ivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~~-~~t~-~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~  388 (480)
                      .. +| +.++||.++ +|+|+||++++ +++++.+..... ..++ +.|+++++++.++|+..  +++.++.++.....+
T Consensus       222 ~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~  299 (390)
T 1d2f_A          222 RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNL  299 (390)
T ss_dssp             CSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred             hhhHhhccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHH
Confidence            11 13 789999999 89999999985 788887765444 4565 77899999999988742  333444444444444


Q ss_pred             HHHHHhHHh-cCceeeEeccc-eeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCC
Q 011669          389 ERLTALKDK-YGIIGDVRGRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCF  461 (480)
Q Consensus       389 ~~L~~l~~~-~~~~~~v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~  461 (480)
                      +.+.+..++ ++.+..+++.| +++|+++....       .....+.+.|. ++||++.++..+    .+++||+++.  
T Consensus       300 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--  370 (390)
T 1d2f_A          300 TYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN-------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--  370 (390)
T ss_dssp             HHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--
T ss_pred             HHHHHHHHhhCCCCEEecCCccEEEEEEccccC-------CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--
Confidence            444443333 44344445555 45577774210       01456888888 689999987543    3689999764  


Q ss_pred             CHHHHHHHHHHHHHHHhh
Q 011669          462 TKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       462 t~~~id~~l~~l~~~l~~  479 (480)
                      +++++++++++|++++++
T Consensus       371 ~~~~l~~~l~~l~~~l~~  388 (390)
T 1d2f_A          371 PRSKLEKGVAGLINAIRA  388 (390)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            689999999999998865

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=1e-35  Score=300.86  Aligned_cols=357  Identities=12%  Similarity=0.049  Sum_probs=253.7

Q ss_pred             eEEEeeeccEEEeCCCCEE-----EeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC--
Q 011669           83 LNVVDGKMQYLFDENGRRY-----LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--  155 (480)
Q Consensus        83 ~~~~~g~G~~l~d~dG~~y-----lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~--  155 (480)
                      +...+|+|+++||.+|++|     |||..|...   .+.+|+|.+|+.+++.+..+....+..+...++++.+++.++  
T Consensus        11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~~~---~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~   87 (391)
T 4dq6_A           11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVADMD---FKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWK   87 (391)
T ss_dssp             CCCCTTTTBHHHHCHHHHHSCSCSEECCSSSCS---SCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred             ccccccCCceeeeecccccCCCCceeccccCCC---CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            4456889999999987655     999887533   367899999999999875443333456777889999988876  


Q ss_pred             CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC--cCCCCC
Q 011669          156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFG  233 (480)
Q Consensus       156 ~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~--~~~~~~  233 (480)
                      .+.++|++++||++|++.+++.+..  +++.|++..++||+........             |...+.+|..  ..+.|.
T Consensus        88 ~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~  152 (391)
T 4dq6_A           88 IKSEWLIYSPGVIPAISLLINELTK--ANDKIMIQEPVYSPFNSVVKNN-------------NRELIISPLQKLENGNYI  152 (391)
T ss_dssp             CCGGGEEEESCHHHHHHHHHHHHSC--TTCEEEECSSCCTHHHHHHHHT-------------TCEEEECCCEECTTSCEE
T ss_pred             CcHHHeEEcCChHHHHHHHHHHhCC--CCCEEEEcCCCCHHHHHHHHHc-------------CCeEEeeeeeecCCCceE
Confidence            5577899999999999999997743  6689999999999877655433             2222333321  111222


Q ss_pred             CChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc
Q 011669          234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH  313 (480)
Q Consensus       234 ~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~  313 (480)
                      .|    .++++++++    + +++|+++.+++++|.+. +++.+++|+++|++||+++|+||+|++|+++|.....+...
T Consensus       153 ~d----~~~l~~~l~----~-~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  222 (391)
T 4dq6_A          153 MD----YEDIENKIK----D-VKLFILCNPHNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASI  222 (391)
T ss_dssp             CC----HHHHHHHCT----T-EEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             ee----HHHHHHHhh----c-CCEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHc
Confidence            23    677888775    2 77787877788888764 77789999999999999999999999998877322222221


Q ss_pred             -----CCCcceeeeccccc-cCccccccccCH-HHHHhhcCCC-ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 011669          314 -----GVVPDIVTMAKGIG-NGIPLGAVVTTP-EIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS  385 (480)
Q Consensus       314 -----~~~pDivt~sK~~g-~G~pig~v~~~~-~~~~~l~~~~-~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~  385 (480)
                           +....+.++||.+| +|+|+||+++++ ++++.+.... ...+++.|+++++++.++|+..  +++.++..+...
T Consensus       223 ~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~  300 (391)
T 4dq6_A          223 SKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG--ESWLESFLEYLE  300 (391)
T ss_dssp             CHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred             CccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch--HHHHHHHHHHHH
Confidence                 22344668999998 799999999885 8888776542 3456688999999999998753  333444444444


Q ss_pred             HHHHHHHHhHHh-cCceeeEecccee-EEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC----CCEEEEeCC
Q 011669          386 YLKERLTALKDK-YGIIGDVRGRGFL-LGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY----GNVFRITPP  458 (480)
Q Consensus       386 ~l~~~L~~l~~~-~~~~~~v~g~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~  458 (480)
                      ..++.+.+..++ ++.+..+++.+.+ .|+++....       .....+.+.|+++ ||++.++..+    .+++||+++
T Consensus       301 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~  373 (391)
T 4dq6_A          301 SNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALG-------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA  373 (391)
T ss_dssp             HHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC
T ss_pred             HHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcC-------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc
Confidence            444444443333 3445445555554 457764311       1246788889988 9999987543    378999966


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 011669          459 LCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~l~  478 (480)
                        ++++++++++++|+++++
T Consensus       374 --~~~~~i~~~l~~l~~~l~  391 (391)
T 4dq6_A          374 --CPRSMLEEALIRIKNAIN  391 (391)
T ss_dssp             --SCHHHHHHHHHHHHHHHC
T ss_pred             --CCHHHHHHHHHHHHHHhC
Confidence              699999999999999873

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=1.3e-33  Score=286.62  Aligned_cols=347  Identities=13%  Similarity=0.115  Sum_probs=257.8

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhccccc-----cccCChHHHHHHHHHHH
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST-----VLYLNHAIADFAEALAS  152 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~-----~~~~~~~~~~l~e~L~~  152 (480)
                      ++.|+.+.+++|.++| .+|+.||||.+|.+   +|| .+|.+.+++.+++.+..+..     ..+..+...++++++++
T Consensus        24 ~~~~~~~~~~~g~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~   99 (398)
T 3a2b_A           24 YAYFRPIQSKQDTEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSA   99 (398)
T ss_dssp             CCSSCCBCSCSSSEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred             ccceeeecCCCCceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHH
Confidence            3568899999999999 99999999998854   677 78999999999987753221     12345778899999999


Q ss_pred             hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                      .++.  +++++++||++|++.+++.+..  +++.|++.+++|.+. ...+...+            ...+.+|.      
T Consensus       100 ~~g~--~~v~~~~ggt~a~~~~~~~~~~--~gd~V~~~~p~~~~~-~~~~~~~g------------~~~~~v~~------  156 (398)
T 3a2b_A          100 YVGK--EAAILFSTGFQSNLGPLSCLMG--RNDYILLDERDHASI-IDGSRLSF------------SKVIKYGH------  156 (398)
T ss_dssp             HHTC--SEEEEESSHHHHHHHHHHHSSC--TTCEEEEETTCCHHH-HHHHHHSS------------SEEEEECT------
T ss_pred             HhCC--CcEEEECCHHHHHHHHHHHHhC--CCCEEEECCccCHHH-HHHHHHcC------------CceEEeCC------
Confidence            9854  6899999999999999987642  556777777766544 33333322            22222221      


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCc--cccCCCcccc
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGF  310 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgf--gr~G~~~~~~  310 (480)
                       .|    .++++++++....+++++|+++++++++|.+.+    +++|.++|++||+++|+||+|..+  ++++ ..+ .
T Consensus       157 -~d----~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~-~  225 (398)
T 3a2b_A          157 -NN----MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKG-AGT-A  225 (398)
T ss_dssp             -TC----HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCH-H
T ss_pred             -CC----HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCC-Cch-H
Confidence             13    578888887532226889999999999998875    999999999999999999999643  3444 211 2


Q ss_pred             cccCCC--ccee--eecccccc-CccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHH
Q 011669          311 EAHGVV--PDIV--TMAKGIGN-GIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHV  382 (480)
Q Consensus       311 ~~~~~~--pDiv--t~sK~~g~-G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~  382 (480)
                      +.+++.  +|++  ++||.++. |   ||+++++++++.+....  +..+...++..++++.++|+.++. ++..+++++
T Consensus       226 ~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~  302 (398)
T 3a2b_A          226 SHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWK  302 (398)
T ss_dssp             HHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred             hhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            334443  5777  89999983 5   99999999988876532  345556677777777888876543 366777888


Q ss_pred             HHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----CCEEEEeC
Q 011669          383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----GNVFRITP  457 (480)
Q Consensus       383 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p  457 (480)
                      +.+++.+.|+++  .+..   +++.|.++++.+.        .......+.+.|+++||++.++..+     .+++||++
T Consensus       303 ~~~~l~~~L~~~--g~~~---~~~~g~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~  369 (398)
T 3a2b_A          303 NTDYAKAQLLDH--GFDL---GATESPILPIFIR--------SNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSL  369 (398)
T ss_dssp             HHHHHHHHHHHT--TCCB---CSCCSSEEEEECC--------CHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEEC
T ss_pred             HHHHHHHHHHhc--CCCc---CCCCCCEEEEEcC--------CHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEE
Confidence            888888888775  2322   3456888888862        2334567889999999999987543     47899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Q 011669          458 PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +..++++++++++++|++++++
T Consensus       370 ~~~~~~e~i~~~~~~l~~~l~~  391 (398)
T 3a2b_A          370 MATHTYDQIDEAIEKMVKVFKQ  391 (398)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999875

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=4.2e-35  Score=297.59  Aligned_cols=355  Identities=11%  Similarity=0.023  Sum_probs=245.0

Q ss_pred             EEEeeeccEEEeCCCC-------EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHh---
Q 011669           84 NVVDGKMQYLFDENGR-------RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASK---  153 (480)
Q Consensus        84 ~~~~g~G~~l~d~dG~-------~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~---  153 (480)
                      +..+|+|+++||.+|+       +++||.++..  .++ .+|+|.+++.+++....+   .|... ..+++++++++   
T Consensus         9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~---~y~~~-~~~l~~~la~~l~~   81 (399)
T 1c7n_A            9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVL---GYTGP-TEEYKKTVKKWMKD   81 (399)
T ss_dssp             CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCC---SSBCC-CHHHHHHHHHHHHH
T ss_pred             ccccCCCccccccchhhccccCCCceeeeecCC--CCC-CCHHHHHHHHHHHhcCCC---CCCCC-cHHHHHHHHHHHHH
Confidence            4457999999999884       7899987763  355 689999999999875321   23222 44555555554   


Q ss_pred             -CC--CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC-cC
Q 011669          154 -MP--GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YR  229 (480)
Q Consensus       154 -~~--~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~~  229 (480)
                       ++  .+.++|++++||++|++.+++.+..  ++++|++.+++||+....+...             |...+.+|.. ..
T Consensus        82 ~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~~  146 (399)
T 1c7n_A           82 RHQWDIQTDWIINTAGVVPAVFNAVREFTK--PGDGVIIITPVYYPFFMAIKNQ-------------ERKIIECELLEKD  146 (399)
T ss_dssp             HHCCCCCGGGEEEESSHHHHHHHHHHHHCC--TTCEEEECSSCCTHHHHHHHTT-------------TCEEEECCCEEET
T ss_pred             HhCCCCChhhEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCcHhHHHHHHHc-------------CCEEEecccccCC
Confidence             34  4567899999999999999997643  5688999999999977655432             2222222221 01


Q ss_pred             CCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc
Q 011669          230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (480)
Q Consensus       230 ~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~  309 (480)
                      +.|..|    .+++++.++.   .++++|++...++++|.+ .+++++++|.++|++||+++|+||+|++|+++|..+..
T Consensus       147 g~~~~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~  218 (399)
T 1c7n_A          147 GYYTID----FQKLEKLSKD---KNNKALLFCSPHNPVGRV-WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV  218 (399)
T ss_dssp             TEEECC----HHHHHHHHTC---TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC
T ss_pred             CCEEEc----HHHHHHHhcc---CCCcEEEEcCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCccc
Confidence            112223    6788888862   367788877778888876 47789999999999999999999999999877632222


Q ss_pred             ccc-----cCCCcceeeeccccc-cCccccccccC-HHHHHhhcCCCccccC-CCcHHHHHHHHHHHHHhhhhHHHHHHH
Q 011669          310 FEA-----HGVVPDIVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAH  381 (480)
Q Consensus       310 ~~~-----~~~~pDivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~~~~t~-~~~~~~~aaa~a~L~~i~~~~~~~~~~  381 (480)
                      +..     .+....+.++||.++ +|+|+||++++ +++++.+.......++ +.|+++++++.++|+..  +++.++.+
T Consensus       219 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~  296 (399)
T 1c7n_A          219 FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC--GKWLDGCI  296 (399)
T ss_dssp             GGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHH
T ss_pred             HHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHH
Confidence            222     233445668999999 89999999997 6788877654444444 57899999999988743  33444444


Q ss_pred             HHHHHHHHHHHHhHHh-cCceeeEeccce-eEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEE
Q 011669          382 VVGSYLKERLTALKDK-YGIIGDVRGRGF-LLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFR  454 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~~-~~~~~~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iR  454 (480)
                      +....+++.+.+..++ ++.+..+++.|. ++|+++....       .....+.+.|+ ++||++.++..+    .+++|
T Consensus       297 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR  369 (399)
T 1c7n_A          297 KVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK-------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFER  369 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEE
T ss_pred             HHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCC-------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEE
Confidence            4444444444443333 444444555554 4577774210       01456788887 689999987543    37899


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          455 ITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       455 i~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |+++.  +++++++++++|.+++++
T Consensus       370 is~~~--~~~~l~~~l~~l~~~l~~  392 (399)
T 1c7n_A          370 INLAA--PSSVIQESLERLNKALKD  392 (399)
T ss_dssp             EECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             EEecc--CHHHHHHHHHHHHHHHHH
Confidence            99764  489999999999998864

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=9e-34  Score=283.65  Aligned_cols=343  Identities=15%  Similarity=0.128  Sum_probs=238.8

Q ss_pred             CeEEEeeeccEEEe-CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCE
Q 011669           82 PLNVVDGKMQYLFD-ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKV  160 (480)
Q Consensus        82 p~~~~~g~G~~l~d-~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~  160 (480)
                      ++.+.+|.+.+.++ .+|+++|||.+|...  ++ .+|+|.+|+.+++...    ..|+++...+++++|+++++.+.++
T Consensus         8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~~--~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~   80 (361)
T 3ftb_A            8 GDLMIHGGDIYTEGVFKGRELLDYSSNINP--LG-IPKSFLNNIDEGIKNL----GVYPDVNYRRLNKSIENYLKLKDIG   80 (361)
T ss_dssp             --------------------CEETTCCCCT--TC-SCHHHHTTHHHHHHGG----GSCCCTTCHHHHHHHHHHHTCCSCE
T ss_pred             CccccCCCCHHHHhhcCCCCEEEecCCCCC--CC-CCHHHHHHHHHHHHHh----cCCCCccHHHHHHHHHHHhCCCcce
Confidence            45556665555444 489999999998754  34 6899999999998864    2345566789999999999877789


Q ss_pred             EEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHH
Q 011669          161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA  240 (480)
Q Consensus       161 v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~  240 (480)
                      |+|++||++|++.+++.+      ++|++.+++||+........             |...+.+|....+.|+      .
T Consensus        81 i~~~~g~t~al~~~~~~~------d~vi~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~------~  135 (361)
T 3ftb_A           81 IVLGNGASEIIELSISLF------EKILIIVPSYAEYEINAKKH-------------GVSVVFSYLDENMCID------Y  135 (361)
T ss_dssp             EEEESSHHHHHHHHHTTC------SEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCTTSCCC------H
T ss_pred             EEEcCCHHHHHHHHHHHc------CcEEEecCChHHHHHHHHHc-------------CCeEEEeecCcccCCC------H
Confidence            999999999999999865      78999999999876655433             2222222222222222      4


Q ss_pred             HHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcc--
Q 011669          241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD--  318 (480)
Q Consensus       241 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pD--  318 (480)
                      +++++.++   +  +++|+++..+|++|.+. +.+.+++|.++|++||+++|+||+|++|++.+ ........+..++  
T Consensus       136 ~~l~~~l~---~--~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~i  208 (361)
T 3ftb_A          136 EDIISKID---D--VDSVIIGNPNNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP-SSSFVGEIKNYSCLF  208 (361)
T ss_dssp             HHHHHHTT---T--CSEEEEETTBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT-TSSSGGGTTTCSSEE
T ss_pred             HHHHHhcc---C--CCEEEEeCCCCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCc-ccchhHhcccCCCEE
Confidence            67777775   2  55666666678888764 77789999999999999999999999887652 2222233233333  


Q ss_pred             -eeeeccccc-cCccccccc-cCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Q 011669          319 -IVTMAKGIG-NGIPLGAVV-TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK  395 (480)
Q Consensus       319 -ivt~sK~~g-~G~pig~v~-~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~  395 (480)
                       +.++||.++ +|+|+||++ .++++++.+....  .+++.|+++++++.++|+   ++++.++.++....+++.+.+..
T Consensus       209 ~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l  283 (361)
T 3ftb_A          209 IIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQ--NPWNINCFAEMAAINCLK---DTNYIEESLLWIKKERKRFIEEL  283 (361)
T ss_dssp             EEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTS--CTTCSCHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHH
Confidence             347899999 799999998 8999998887644  467889999999998886   23444555555555555555555


Q ss_pred             HhcCcee-eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHH
Q 011669          396 DKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       396 ~~~~~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l  470 (480)
                      ++++.+. ..++.|.++++.+...         ....+.+.|.++||++.++..+    .+++||+++   +++++++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~  351 (361)
T 3ftb_A          284 NKIGFIKRVFSPHANFVLCRLENI---------SGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFL  351 (361)
T ss_dssp             HHSSSEEEEECCSSSEEEEEESSS---------CHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHH
T ss_pred             HhCCCCceecCCCCeEEEEEcCCC---------CHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHH
Confidence            5566666 6778899999887431         1467888899999999987543    478999954   888999999


Q ss_pred             HHHHHHHhhC
Q 011669          471 DVMDYSLSKM  480 (480)
Q Consensus       471 ~~l~~~l~~~  480 (480)
                      +.|+++.+.+
T Consensus       352 ~~l~~~~~~l  361 (361)
T 3ftb_A          352 RALKGVENNL  361 (361)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhcC
Confidence            9999887653

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=3.7e-34  Score=293.69  Aligned_cols=351  Identities=12%  Similarity=0.051  Sum_probs=239.0

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHh----CC--CCCC-EEEEeCCHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASK----MP--GNLK-VVFFTNSGTEAN  171 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~----~~--~~~~-~v~f~~sGseA~  171 (480)
                      .+|||..|..  .+| .+|.|.+++.+++.+..+....|.. ....+++++|+++    ++  .+.+ +|+|++||++|+
T Consensus        38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~  114 (429)
T 1yiz_A           38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL  114 (429)
T ss_dssp             CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence            5789988875  456 6899999999998763211112222 1234455555544    34  3566 899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC--------CCCCCChHHHHHHH
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR--------GVFGADGEMYAKDV  243 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~--------~~~~~d~~~~~~~l  243 (480)
                      +.+++.+..  +++.|++.+++||+........ +            ...+.+|....        ..|..|    .++|
T Consensus       115 ~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~-g------------~~~~~~~~~~~~~~~~~~~~~~~~d----~~~l  175 (429)
T 1yiz_A          115 YATIQGHVD--EGDEVIIIEPFFDCYEPMVKAA-G------------GIPRFIPLKPNKTGGTISSADWVLD----NNEL  175 (429)
T ss_dssp             HHHHHHHCC--TTCEEEEEESCCTTHHHHHHHT-T------------CEEEEEECBCCCSSSSEEGGGCBCC----HHHH
T ss_pred             HHHHHHhcC--CCCEEEEcCCCchhHHHHHHHc-C------------CEEEEEeCCcccccccccccCcccC----HHHH
Confidence            999998743  5688999999999977654322 1            11111111111        023334    6778


Q ss_pred             HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc----ccCCCcce
Q 011669          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE----AHGVVPDI  319 (480)
Q Consensus       244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~----~~~~~pDi  319 (480)
                      ++.++    +++++|++++++|++|.+. +++++++|.++|++||+++|+||+|++|+++|.....+.    ..+..+++
T Consensus       176 ~~~l~----~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~  250 (429)
T 1yiz_A          176 EALFN----EKTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITI  250 (429)
T ss_dssp             HHHCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEE
T ss_pred             HHHhc----cCceEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEE
Confidence            77774    3688888888899999774 778999999999999999999999999987663222221    23455667


Q ss_pred             eeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHH
Q 011669          320 VTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-----IQKDKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       320 vt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~-----i~~~~~~~~~~~~~~~l~~~L~~  393 (480)
                      .++||.++ +|+|+||+++++++++.+....+..+++.|+++++++.++|+.     ...+++.+++++..+.+++.|.+
T Consensus       251 ~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  330 (429)
T 1yiz_A          251 GSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMAS  330 (429)
T ss_dssp             EEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             ecchhccCCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            79999999 7999999999999998887655567889999999999999986     32244444444444444444433


Q ss_pred             hHHhcCceeeEeccceeEEEEEecCCCcC----CCCHHHHHHHHHHHH-HcCceeeccCcC---------CCEEEEeCCC
Q 011669          394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLK----TPAKAETLYIMDKMK-EMGVLVGKGGFY---------GNVFRITPPL  459 (480)
Q Consensus       394 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~----~~~~~~~~~~~~~l~-~~Gv~v~~~~~~---------~~~iRi~p~~  459 (480)
                      ..+++++.......|+++++++.......    .........+.+.|. ++||++.++..+         .+++||+++ 
T Consensus       331 ~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~-  409 (429)
T 1yiz_A          331 FLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF-  409 (429)
T ss_dssp             HHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC-
T ss_pred             HHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec-
Confidence            33333433223335778898875321000    000012456777776 789999887433         478999977 


Q ss_pred             CCCHHHHHHHHHHHHHHHhh
Q 011669          460 CFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       460 ~~t~~~id~~l~~l~~~l~~  479 (480)
                       .++++|++++++|++++++
T Consensus       410 -~~~e~i~~~l~~l~~~l~~  428 (429)
T 1yiz_A          410 -KKDENLQKAAEILRKWKGS  428 (429)
T ss_dssp             -SCHHHHHHHHHHHHHHSCC
T ss_pred             -CCHHHHHHHHHHHHHhccC
Confidence             4999999999999998764

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=3.4e-34  Score=291.72  Aligned_cols=346  Identities=15%  Similarity=0.080  Sum_probs=242.4

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCCEEEEeCCHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGTE  169 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~~v~f~~sGse  169 (480)
                      .|+.+|||.+|.+.. .||++|+|.+++.+++++..+... |.. ....++++++++++    +  .+.++|++++||++
T Consensus        32 ~g~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~  109 (407)
T 2zc0_A           32 KGVKLISLAAGDPDP-ELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG  109 (407)
T ss_dssp             SSCCCEECCSCCCCT-TTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred             CCCceEeCCCCCCCc-hhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence            377899999988754 478999999999999987432222 332 23455666666554    5  34678999999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      |++.+++.+..  +++.|++.+++||+........             |...+.+|....   +.|    .+++++.++.
T Consensus       110 a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~---~~d----~~~l~~~l~~  167 (407)
T 2zc0_A          110 ALDLLGRVLID--PGDVVITENPSYINTLLAFEQL-------------GAKIEGVPVDND---GMR----VDLLEEKIKE  167 (407)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTT-------------TCEEEEEEEETT---EEC----HHHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHc-------------CCEEEEcccCCC---CCC----HHHHHHHHHh
Confidence            99999998753  5688999999999876543321             112211111100   012    5778877761


Q ss_pred             c--CCCceEEEE-EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc---CCCcceeeec
Q 011669          250 G--TSGHVAGFL-SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH---GVVPDIVTMA  323 (480)
Q Consensus       250 ~--~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~---~~~pDivt~s  323 (480)
                      .  ...++++|+ ++.+++++|.+. +.+++++|.++|++||+++|+||+|+++.++|.....+..+   +...++.++|
T Consensus       168 ~~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  246 (407)
T 2zc0_A          168 LKAKGQKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLS  246 (407)
T ss_dssp             HHHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEEST
T ss_pred             hhcccCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccc
Confidence            0  112677774 556788888764 77889999999999999999999999987766322223222   3345667899


Q ss_pred             cccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669          324 KGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-----DKLQNNAHVVGSYLKERLTALKDKY  398 (480)
Q Consensus       324 K~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-----~~~~~~~~~~~~~l~~~L~~l~~~~  398 (480)
                      |.+++|+|+||+++++++++.+.......+++.++++++++.++|+....     +...++++++.+++.+.|++.   .
T Consensus       247 K~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~  323 (407)
T 2zc0_A          247 KVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH---L  323 (407)
T ss_dssp             TTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHH---C
T ss_pred             cccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh---C
Confidence            99999999999999999998887655556788899999999998875411     234455555666666666543   2


Q ss_pred             Cceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC------CCEEEEeCCCCCCHHHHHHHH
Q 011669          399 GIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY------GNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       399 ~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l  470 (480)
                      +.+.. .+..|+++++.+...        .....+.+.|.++ ||++.++..+      .+++||+++.. |++++++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~  394 (407)
T 2zc0_A          324 PNAEFTKPIAGMFVMFFLPEG--------ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGI  394 (407)
T ss_dssp             TTSCBCCCSBSSEEEEECSTT--------CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHH
T ss_pred             CCCEEecCCCcEEEEEEcCCC--------CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHH
Confidence            22222 234577888887321        1145688888888 9999887433      47899998866 899999999


Q ss_pred             HHHHHHHhh
Q 011669          471 DVMDYSLSK  479 (480)
Q Consensus       471 ~~l~~~l~~  479 (480)
                      ++|++++++
T Consensus       395 ~~l~~~l~~  403 (407)
T 2zc0_A          395 KKLAKLYKE  403 (407)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=100.00  E-value=6.8e-33  Score=279.85  Aligned_cols=344  Identities=16%  Similarity=0.174  Sum_probs=252.4

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCC-CCCHHHHHHHHHHHHhccc--cccc---cCChHHHHHHHHHHH
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQH--STVL---YLNHAIADFAEALAS  152 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~--~~~~---~~~~~~~~l~e~L~~  152 (480)
                      ++.|+.+.+++|.+++ .+|++||||.+|..   +| |.+|++.+++.+++.+..+  ....   ...+...+++++|++
T Consensus        20 ~~~~~~~~~~~g~~~~-~~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~   95 (384)
T 1bs0_A           20 LRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAE   95 (384)
T ss_dssp             CCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred             ccccccccCCCCceEE-ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHH
Confidence            4568889999999999 79999999998743   67 6899999999999987432  1122   235788999999999


Q ss_pred             hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                      +++.  +++++++||++|+..+++.+..  +++.| ++...+|+.....+...+            ...+.+|.      
T Consensus        96 ~~g~--~~~i~~~sGt~a~~~~~~~~~~--~gd~v-~~~~~~~~~~~~~~~~~g------------~~~~~~~~------  152 (384)
T 1bs0_A           96 WLGY--SRALLFISGFAANQAVIAAMMA--KEDRI-AADRLSHASLLEAASLSP------------SQLRRFAH------  152 (384)
T ss_dssp             HHTC--SEEEEESCHHHHHHHHHHHHCC--TTCEE-EEETTCCHHHHHHHHTSS------------SEEEEECT------
T ss_pred             HhCC--CcEEEeCCcHHHHHHHHHHhCC--CCcEE-EEcccccHHHHHHHHHcC------------CCEEEeCC------
Confidence            9964  4678889999999999986532  34445 445555665555444332            22222221      


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-Cc-cccCCCcccc
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFWGF  310 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gf-gr~G~~~~~~  310 (480)
                       .|    .++++++++... +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|. |+ +++| ..+ .
T Consensus       153 -~d----~~~l~~~l~~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~-~  220 (384)
T 1bs0_A          153 -ND----VTHLARLLASPC-PGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQG-RGS-C  220 (384)
T ss_dssp             -TC----HHHHHHHHHSCC-SSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGG-CCH-H
T ss_pred             -CC----HHHHHHHHHhcC-CCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCC-Cch-H
Confidence             23    578888887532 24789999999999999876    9999999999999999999996 32 4445 222 2


Q ss_pred             cccCCCccee--eeccccccCccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHH
Q 011669          311 EAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVV  383 (480)
Q Consensus       311 ~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~  383 (480)
                      +.++..+|++  ++||.++.  +.||+++++++++.+....  +..+.+.|++.++++.++|+.+.+   ++..++++++
T Consensus       221 ~~~~~~~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  298 (384)
T 1bs0_A          221 WLQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAAL  298 (384)
T ss_dssp             HHTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             HhcCCCCcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            3455668888  89999983  3399999999988776532  234457899999999999988763   3566777777


Q ss_pred             HHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----CCEEEEeCC
Q 011669          384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----GNVFRITPP  458 (480)
Q Consensus       384 ~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p~  458 (480)
                      .+++.+.|+++    +. ....+.|.++++.+.        .......+.+.|.++||.+.++..+     .+++||+++
T Consensus       299 ~~~l~~~L~~~----g~-~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~  365 (384)
T 1bs0_A          299 ITRFRAGVQDL----PF-TLADSCSAIQPLIVG--------DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLT  365 (384)
T ss_dssp             HHHHHHHHTTS----SC-EECSCCSSBCCEEEE--------SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCC
T ss_pred             HHHHHHHHHhc----CC-cccCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEc
Confidence            77777777664    22 122356778888773        1234567889999999999887533     268999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 011669          459 LCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~  476 (480)
                      ..+|++++++++++|+++
T Consensus       366 ~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          366 AAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             TTCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            888999999999999874

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=100.00  E-value=1.4e-33  Score=287.64  Aligned_cols=338  Identities=16%  Similarity=0.098  Sum_probs=248.7

Q ss_pred             EeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhcccc---cc--ccCChHHHHHHHHHHHhCCCCCC
Q 011669           86 VDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHS---TV--LYLNHAIADFAEALASKMPGNLK  159 (480)
Q Consensus        86 ~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~---~~--~~~~~~~~~l~e~L~~~~~~~~~  159 (480)
                      .++.+.+++|.||++||||.++.+   +|+ .||+|.+|+.+++.+....   ..  ....+...+++++|+++++.  +
T Consensus        46 ~~~~~~~~~~~~g~~~ld~~s~~~---l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~  120 (409)
T 3kki_A           46 KNGKHLVLGKQASPDDIILQSNDY---LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF--D  120 (409)
T ss_dssp             TTSSCTTCCCCCCTTSEECCCSCT---TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC--S
T ss_pred             cCCCeeeeCCCCCCceEEeeccCc---cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC--C
Confidence            356788889999999999987633   344 5899999999999874221   11  12345667899999999854  4


Q ss_pred             EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHH
Q 011669          160 VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY  239 (480)
Q Consensus       160 ~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~  239 (480)
                      .+++++||++||+.+++.+..  +++.|++.++. |+.....+...+            ...+.++.       .|    
T Consensus       121 ~~i~~~sGt~a~~~~l~~~~~--~gd~Vl~~~~~-~~~~~~~~~~~g------------~~~~~~~~-------~d----  174 (409)
T 3kki_A          121 ECLLSQSGWNANVGLLQTICQ--PNTNVYIDFFA-HMSLWEGARYAN------------AQAHPFMH-------NN----  174 (409)
T ss_dssp             EEEEESCHHHHHHHHHHHHCC--TTCEEEEETTS-CHHHHHHHHHTT------------CEEEEECT-------TC----
T ss_pred             eEEEecchHHHHHHHHHHhcC--CCCEEEECCCc-CHHHHHHHHHcC------------CeEEEecC-------CC----
Confidence            577889999999999986543  45566655555 454444443332            22222221       23    


Q ss_pred             HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC--ccccCCCcccccccCC--
Q 011669          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGV--  315 (480)
Q Consensus       240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg--fgr~G~~~~~~~~~~~--  315 (480)
                      .++++++++..   ++++|+++++++++|.+.+    +++|+++|++||++||+||+|++  +|++| ..+. ...++  
T Consensus       175 ~~~le~~l~~~---~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g-~~~~-~~~~~~~  245 (409)
T 3kki_A          175 CDHLRMLIQRH---GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNG-AGLL-AELGLTR  245 (409)
T ss_dssp             HHHHHHHHHHH---CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCHH-HHHTCGG
T ss_pred             HHHHHHHHHhc---CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-Ccch-hhcCCCC
Confidence            67888888742   4689999999999998876    99999999999999999999998  77777 3322 34455  


Q ss_pred             Ccce--eeeccccccCccccccccCHHHHHhhcCCCcc--ccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Q 011669          316 VPDI--VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKER  390 (480)
Q Consensus       316 ~pDi--vt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~--~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~  390 (480)
                      .+|+  .|+||++++|  .|++++++++++.+......  .+.+.++++++++.++|+.+++ +++.++++++++++++.
T Consensus       246 ~~di~~~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~  323 (409)
T 3kki_A          246 EVHFMTASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIG  323 (409)
T ss_dssp             GCSEEEEESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEeecchhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            4566  5799999976  58999999888776543222  2334678999999999998765 46777888888888888


Q ss_pred             HHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCCCCCHHH
Q 011669          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPLCFTKED  465 (480)
Q Consensus       391 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~~~  465 (480)
                      |+++  .+.    +.+.|.++++.+..        ......+.+.|+++||++.+...     ..+++||+++..+|+++
T Consensus       324 L~~~--g~~----~~~~~~~~~~~~~~--------~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~  389 (409)
T 3kki_A          324 LSQL--GLT----IRSESQIIGLETGD--------ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQ  389 (409)
T ss_dssp             HHTT--TCC----CCCSSSEEEEEEES--------HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred             HHHc--CCc----cCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHH
Confidence            8776  222    33678888888732        23456788999999999976432     24689999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 011669          466 ADYLVDVMDYSLSK  479 (480)
Q Consensus       466 id~~l~~l~~~l~~  479 (480)
                      |++++++|++++++
T Consensus       390 i~~~~~~l~~~l~~  403 (409)
T 3kki_A          390 IAKIIEVCSDAVNY  403 (409)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999864

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=9.6e-34  Score=292.45  Aligned_cols=349  Identities=10%  Similarity=0.081  Sum_probs=241.4

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC----CC-CCCEEEEeCCHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----PG-NLKVVFFTNSGTEAN  171 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~----~~-~~~~v~f~~sGseA~  171 (480)
                      +..+|||.+|.+... ++.++++.+++.+++++.......|. .....+|+++|++++    +. +.++|++|+||++|+
T Consensus        75 ~~~~i~l~~g~p~~~-~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al  153 (448)
T 3aow_A           75 TSDIISLAGGLPNPK-TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL  153 (448)
T ss_dssp             TSSSEECCCCCCCGG-GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred             CCCcEeCCCCCCCch-hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence            456899999987654 48899999999998876321111222 233455666666655    54 568999999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc-
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-  250 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-  250 (480)
                      +.+++++..  +++.|++.+++|++........             |...+.+|....   +.|    .++|+++++.. 
T Consensus       154 ~~~~~~l~~--~Gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~---g~d----~~~L~~~l~~~~  211 (448)
T 3aow_A          154 DLIGRVFLN--PGDIVVVEAPTYLAALQAFNFY-------------EPQYIQIPLDDE---GMK----VEILEEKLKELK  211 (448)
T ss_dssp             HHHHHHHCC--TTCEEEEEESCCHHHHHHHHTT-------------CCEEEEEEEETT---EEC----HHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCCEEEEeCCChHHHHHHHHHc-------------CCEEEEeccCCC---CCC----HHHHHHHHhhhh
Confidence            999998743  5689999999999977654332             122222221100   113    57788877610 


Q ss_pred             -CCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC---cccccccCCCcceeeeccc
Q 011669          251 -TSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFEAHGVVPDIVTMAKG  325 (480)
Q Consensus       251 -~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~---~~~~~~~~~~pDivt~sK~  325 (480)
                       ...++++|++.| .+|++|.+ .+.+++++|.++|++||+++|+||+|+++.+.|..   +..++..+..+++.+|||.
T Consensus       212 ~~~~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~  290 (448)
T 3aow_A          212 SQGKKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI  290 (448)
T ss_dssp             HTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTT
T ss_pred             ccCCCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhh
Confidence             113678876554 67778876 57889999999999999999999999998776632   2233334556778899999


Q ss_pred             cccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHh-cC-ceee
Q 011669          326 IGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK-YG-IIGD  403 (480)
Q Consensus       326 ~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~-~~-~~~~  403 (480)
                      +++|+|+||+++++++++.+.......+++.|+++++++.++|+...-+++.+++++.....++.|.+..++ ++ .+..
T Consensus       291 ~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~  370 (448)
T 3aow_A          291 LAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKW  370 (448)
T ss_dssp             TCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred             ccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence            999999999999999998887655556788899999999988874211233333333333333333333332 33 2333


Q ss_pred             Ee-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          404 VR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       404 v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      +. ..|+++|+++...        .....+.+.|.++||++.++..+      .+++||+++. .++++|++++++|.++
T Consensus       371 ~~p~~g~~~~v~~~~~--------~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~  441 (448)
T 3aow_A          371 TKPEGGMFIWVTLPDG--------IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAET  441 (448)
T ss_dssp             CCCSBSSEEEEECSTT--------CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHH
T ss_pred             eCCCccEEEEEEcCCC--------CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHH
Confidence            33 3478888887321        11456888899999999987543      4789999875 4899999999999998


Q ss_pred             Hhh
Q 011669          477 LSK  479 (480)
Q Consensus       477 l~~  479 (480)
                      +++
T Consensus       442 l~~  444 (448)
T 3aow_A          442 IKE  444 (448)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=3.8e-34  Score=290.59  Aligned_cols=343  Identities=13%  Similarity=0.071  Sum_probs=239.7

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      ++++|||.+|.+.. .||++|++.+++.+++++..+....|.. ....+++++|+++++.+.++|++++||++|++.+++
T Consensus        31 ~~~~i~l~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~  109 (397)
T 2zyj_A           31 RPGILSFAGGLPAP-ELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK  109 (397)
T ss_dssp             STTCEEESSCCCCG-GGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCceecCCCCCCc-hhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence            45689999888754 4789999999999998764221123332 356788889998886556789999999999999999


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      .+..  ++++|++.+++||+....+....             ...+.+|....+   .|    .+++++.++.   .+++
T Consensus       110 ~~~~--~gd~Vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~---~d----~~~l~~~l~~---~~~~  164 (397)
T 2zyj_A          110 VFLD--EGSPVLLEAPSYMGAIQAFRLQG-------------PRFLTVPAGEEG---PD----LDALEEVLKR---ERPR  164 (397)
T ss_dssp             HHCC--TTCEEEEEESCCHHHHHHHHTTC-------------CEEEEEEEETTE---EC----HHHHHHHHHH---CCCS
T ss_pred             HhCC--CCCEEEEeCCCcHHHHHHHHHcC-------------CEEEecCcCCCC---CC----HHHHHHHHhh---cCCe
Confidence            7643  56889999999999776544321             111111110000   12    6788888864   1456


Q ss_pred             EE-EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc------CCCcceeeeccccccC
Q 011669          257 GF-LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH------GVVPDIVTMAKGIGNG  329 (480)
Q Consensus       257 ~v-i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~------~~~pDivt~sK~~g~G  329 (480)
                      +| ++...++++|.+ .+.+++++|.++|++||+++|+||+|++|+++|.....+..+      +....+.++||.+++|
T Consensus       165 ~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G  243 (397)
T 2zyj_A          165 FLYLIPSFQNPTGGL-TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG  243 (397)
T ss_dssp             CEEECCBSCTTTCCB-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG
T ss_pred             EEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc
Confidence            66 455667888876 477899999999999999999999999998776322222222      2234456899999989


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcC-ceee-E
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYG-IIGD-V  404 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~-v  404 (480)
                      +|+||+++++++++.+.......+++.|+++++++.++|+....   +...+++++..+++.+.|++.   ++ .+.. .
T Consensus       244 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~  320 (397)
T 2zyj_A          244 LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRYTR  320 (397)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEECC
T ss_pred             ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEcc
Confidence            99999999999998887655556777899999998888864211   122233333333444443332   23 2332 2


Q ss_pred             eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +..|+++++++...        .....+.+.|.++||++.++..+      .+++||+++.. +++++++++++|+++++
T Consensus       321 ~~~g~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~  391 (397)
T 2zyj_A          321 PKGGMFVWMELPKG--------LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALK  391 (397)
T ss_dssp             CSBSSEEEEECSTT--------CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCC--------CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH
Confidence            35578888887421        11456888899999999986433      47899998864 89999999999999876


Q ss_pred             h
Q 011669          479 K  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       392 ~  392 (397)
T 2zyj_A          392 G  392 (397)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=3.4e-33  Score=282.85  Aligned_cols=339  Identities=15%  Similarity=0.105  Sum_probs=230.9

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCCEEEEeCCHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGT  168 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~~v~f~~sGs  168 (480)
                      .+|++||||.+|....  + .+|+|.+++.+++.+...   .|.. ....++++++++++    +  .+.++|+||+||+
T Consensus        28 ~~g~~~i~l~~g~~~~--~-~~~~v~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~  101 (391)
T 3h14_A           28 EAGRRIIHMEVGQPGT--G-APRGAVEALAKSLETDAL---GYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSS  101 (391)
T ss_dssp             HTTCCCEECCCSSCSS--C-SCHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred             hcCCCeEEccCCCCCC--C-CCHHHHHHHHHHHhcCCC---CCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChH
Confidence            4789999999988654  3 378999999998875321   1221 12345555555543    2  4567899999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +|++.+++.+..  +++.|++.+++|++........             |...+.+|....+.|..|    .+++++.  
T Consensus       102 ~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~--  160 (391)
T 3h14_A          102 GGFLLAFTALFD--SGDRVGIGAPGYPSYRQILRAL-------------GLVPVDLPTAPENRLQPV----PADFAGL--  160 (391)
T ss_dssp             HHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHT-------------TCEEEEEECCGGGTTSCC----HHHHTTS--
T ss_pred             HHHHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHhc--
Confidence            999999997643  6689999999999876544332             222222222222223223    3444332  


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-  327 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-  327 (480)
                           ++++|+++.++|++|.+. +.+.+++|.++|++||+++|+||+|++|.++|......+..+....+.++||.+| 
T Consensus       161 -----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~  234 (391)
T 3h14_A          161 -----DLAGLMVASPANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSM  234 (391)
T ss_dssp             -----CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCC
T ss_pred             -----CCeEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCC
Confidence                 566777777788888775 7778999999999999999999999999887732222222233344458999999 


Q ss_pred             cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR  407 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  407 (480)
                      +|+|+||+++++++++.+.......+++.|+++++++.++|+   .++..++.++....+++.+.+..++++.....++.
T Consensus       235 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  311 (391)
T 3h14_A          235 TGWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPD  311 (391)
T ss_dssp             TTSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCC
T ss_pred             ccceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence            899999999999999888766566788899999999988886   33334444444444444444444444544433444


Q ss_pred             -ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          408 -GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY-----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       408 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~-----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       ++++++++....       .....+.+.|+++ ||++.++..+     .+++||+++.  +++++++++++|++++++
T Consensus       312 ~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~  381 (391)
T 3h14_A          312 GAFYVYADVSDLT-------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQA  381 (391)
T ss_dssp             BTTEEEEECTTTC-------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEecCccC-------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence             466777763211       1145677777765 9999987543     3589999764  899999999999998865

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=7.9e-34  Score=287.82  Aligned_cols=355  Identities=13%  Similarity=0.072  Sum_probs=244.7

Q ss_pred             CeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCC---C
Q 011669           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPG---N  157 (480)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~---~  157 (480)
                      |+....+.+.+++|.+|+++|||.+|....  + .+|.|.+|+.+++....+... .+..+...++++.+.+.++.   +
T Consensus        13 ~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~--~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~   89 (396)
T 3jtx_A           13 PFARLHEAMQGISAPEGMEAVPLHIGEPKH--P-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVD   89 (396)
T ss_dssp             HHHHHHHHTTTCCCCTTCCCEECSCCSCCS--C-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC
T ss_pred             hHHHHHHHHHhhhhccCCCeEEeCCcCCCC--C-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC
Confidence            344445677778899999999999988544  3 689999999998865432221 22345566777777766653   3


Q ss_pred             CC-EEEEeCCHHHHHHHHHHHHHhhcC---CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCC
Q 011669          158 LK-VVFFTNSGTEANELAIMMARLYTG---CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG  233 (480)
Q Consensus       158 ~~-~v~f~~sGseA~~~Alk~ar~~~~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~  233 (480)
                      .+ +|++++||++|++.+++.+....+   ++.|++.+++||++.........           .+..++.+   ...|.
T Consensus        90 ~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~g~~  155 (396)
T 3jtx_A           90 ADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGG-----------EIHFANCP---APSFN  155 (396)
T ss_dssp             TTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTC-----------EEEEEECC---TTTCC
T ss_pred             CCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEeecC---CCCCc
Confidence            66 899999999999999998754211   26899999999987765443321           11222221   11222


Q ss_pred             CChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc--
Q 011669          234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE--  311 (480)
Q Consensus       234 ~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~--  311 (480)
                      .|    .+++++.++.    ++++|+++..+|++|.+. +.+.+++|.++|++||+++|+||+|++|.++|...++..  
T Consensus       156 ~d----~~~l~~~~~~----~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~  226 (396)
T 3jtx_A          156 PD----WRSISEEVWK----RTKLVFVCSPNNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQA  226 (396)
T ss_dssp             CC----GGGSCHHHHH----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHH
T ss_pred             cC----HHHHHHhhcc----CcEEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhh
Confidence            23    4566666653    577777767788888775 677799999999999999999999999987762232221  


Q ss_pred             ------ccCCCcceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011669          312 ------AHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVG  384 (480)
Q Consensus       312 ------~~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~  384 (480)
                            ..+..+++.+|||.++ +|+|+||+++++++++.+.......+++.|+++++++.++|+.   ++..++.++..
T Consensus       227 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~  303 (396)
T 3jtx_A          227 AAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLY  303 (396)
T ss_dssp             HHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHH
T ss_pred             hhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence                  1455677789999987 6999999999999998887665667788999999999998863   33333333333


Q ss_pred             HHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----------CCEE
Q 011669          385 SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----------GNVF  453 (480)
Q Consensus       385 ~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----------~~~i  453 (480)
                      ...++.+.+...++..+ .....|+++|+++...         ....+.+.|+ ++||++.++..+          .+++
T Consensus       304 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~i  373 (396)
T 3jtx_A          304 QEKFERVIPILQQVFDV-KLPDASFYIWLKVPDG---------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYV  373 (396)
T ss_dssp             HHHHHHHHHHHTTTSCC-CCCSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEE
T ss_pred             HHHHHHHHHHHHhcCCc-cCCCeeEEEEEECCCC---------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeE
Confidence            33333333333332111 2233477888887321         1355777774 569999887432          3799


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          454 RITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      ||+++  .+++++++++++|++++
T Consensus       374 Ris~~--~~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          374 RIALV--ADVATCVKAAEDIVSLY  395 (396)
T ss_dssp             EEECC--SCHHHHHHHHHHHHHHC
T ss_pred             EEEEc--CCHHHHHHHHHHHHHHh
Confidence            99965  49999999999999875

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=3.9e-34  Score=290.97  Aligned_cols=359  Identities=12%  Similarity=0.039  Sum_probs=243.9

Q ss_pred             EEEeeeccEEEeCCCC---EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc---ccccccCChHHHHHHHHHHHhCCCC
Q 011669           84 NVVDGKMQYLFDENGR---RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMPGN  157 (480)
Q Consensus        84 ~~~~g~G~~l~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~l~e~L~~~~~~~  157 (480)
                      ++..++|.++++.+++   ++|||.+|... .++ .+|+|.+|+.+++.+..   +....+..+...++++.|++.++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~   98 (407)
T 3nra_A           21 VRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP   98 (407)
T ss_dssp             ------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            4566777777555555   59999987654 343 68999999999987532   2222344567788888888877643


Q ss_pred             C---CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCc----CC
Q 011669          158 L---KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPY----RG  230 (480)
Q Consensus       158 ~---~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~----~~  230 (480)
                      .   ++|+|++||++|++.+++.+.  .+++.|++.+++|++.........             ...+.+|..+    ..
T Consensus        99 ~~~~~~i~~~~g~~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~  163 (407)
T 3nra_A           99 VDARDGLIITPGTQGALFLAVAATV--ARGDKVAIVQPDYFANRKLVEFFE-------------GEMVPVQLDYVSADET  163 (407)
T ss_dssp             CCTTTSEEEESHHHHHHHHHHHTTC--CTTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEEBCCCSSCCS
T ss_pred             CCCCCcEEEeCCcHHHHHHHHHHhC--CCCCEEEEcCCcccchHHHHHHcC-------------CEEEEeecccccccCc
Confidence            2   689999999999999998653  367889999999998665544332             2222221111    11


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc
Q 011669          231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF  310 (480)
Q Consensus       231 ~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~  310 (480)
                      .+..|    .+++++.++.    ++++|+++..++++|.+. +.+++++|.++|++||+++|+||+|++|+++|..+..+
T Consensus       164 ~~~~d----~~~l~~~l~~----~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~  234 (407)
T 3nra_A          164 RAGLD----LTGLEEAFKA----GARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHL  234 (407)
T ss_dssp             SCCBC----HHHHHHHHHT----TCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCG
T ss_pred             CCCcC----HHHHHHHHhh----CCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCh
Confidence            22223    6788888863    455666665688888764 78889999999999999999999999988777323233


Q ss_pred             cc-----cCCCcceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011669          311 EA-----HGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVG  384 (480)
Q Consensus       311 ~~-----~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~  384 (480)
                      ..     .+..+++.++||.++ +|+|+||+++++++++.+.......+++.++++++++.++|+.  .+++.++..+..
T Consensus       235 ~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~  312 (407)
T 3nra_A          235 RAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARH  312 (407)
T ss_dssp             GGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHH
T ss_pred             hhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHH
Confidence            22     233455668999999 8999999999999998887666667788889988888777752  223333333333


Q ss_pred             HHHHHHHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCC
Q 011669          385 SYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPP  458 (480)
Q Consensus       385 ~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~  458 (480)
                      ..+++.|.+..++++.+..+.+. |+++++.+....       .....+.+.|++ +||++.++..+    .+++||+++
T Consensus       313 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~  385 (407)
T 3nra_A          313 QAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA-------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS  385 (407)
T ss_dssp             HHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS-------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC
T ss_pred             HHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC
Confidence            34444444444444444443444 477777664311       114567787865 59999987543    478999976


Q ss_pred             CCCCHHHHHHHHHHHHHHHhh
Q 011669          459 LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~l~~  479 (480)
                        .++++|++++++|++++++
T Consensus       386 --~~~~~i~~~~~~l~~~~~~  404 (407)
T 3nra_A          386 --QDHEAAVAAARRIVTLVER  404 (407)
T ss_dssp             --SCHHHHHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHHHHHH
Confidence              4999999999999998865

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=100.00  E-value=1.5e-36  Score=307.87  Aligned_cols=355  Identities=12%  Similarity=0.078  Sum_probs=246.1

Q ss_pred             eEEEeeeccEEEeCCCC--EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC----C-
Q 011669           83 LNVVDGKMQYLFDENGR--RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM----P-  155 (480)
Q Consensus        83 ~~~~~g~G~~l~d~dG~--~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~----~-  155 (480)
                      ++-.+|+|+++||.+|+  .+|||..|..  .++ .+|+|.+|+.+++.+..+   .|... ..++++++++++    + 
T Consensus        13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~---~y~~~-~~~l~~~la~~l~~~~g~   85 (392)
T 3b1d_A           13 APNRLSHHTYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLVY---GYTYA-SDELLQAVLDWEKSEHQY   85 (392)
Confidence            45677999999999999  9999988875  344 589999999998865322   22222 445555555543    3 


Q ss_pred             -CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC-cCCCCC
Q 011669          156 -GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFG  233 (480)
Q Consensus       156 -~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~~~~~~  233 (480)
                       .+.++|++++||++|++.+++.+..  ++++|++.+++||+..........             ..+.+|.. ..+.|.
T Consensus        86 ~~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~g~~~  150 (392)
T 3b1d_A           86 SFDKEDIVFVEGVVPAISIAIQAFTK--EGEAVLINSPVYPPFARSVRLNNR-------------KLVSNSLKEENGLFQ  150 (392)
Confidence             3467899999999999999997743  568899999999998765543321             11122110 001111


Q ss_pred             CChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC---Ccccc
Q 011669          234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS---HFWGF  310 (480)
Q Consensus       234 ~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~---~~~~~  310 (480)
                      .|    .+++++.++.   .++++|+++..++++|.+ ++++++++|+++|++||+++|+||+|++|+++|.   .++.+
T Consensus       151 ~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  222 (392)
T 3b1d_A          151 ID----FEQLENDIVE---NDVKLYLLCNPHNPGGRV-WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTV  222 (392)
Confidence            12    4567766652   256777777788888876 5778999999999999999999999999987662   12222


Q ss_pred             cc--cCCCcceeeeccccc-cCccccccccCH-HHHHhhcCCCccccC-CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 011669          311 EA--HGVVPDIVTMAKGIG-NGIPLGAVVTTP-EIAEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS  385 (480)
Q Consensus       311 ~~--~~~~pDivt~sK~~g-~G~pig~v~~~~-~~~~~l~~~~~~~t~-~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~  385 (480)
                      ..  .+..+++.+|||.++ +|+|+||+++++ ++++.+.......++ +.|+++++++.++|+..  +++.+++++...
T Consensus       223 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~  300 (392)
T 3b1d_A          223 SPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLE  300 (392)
Confidence            22  455677889999999 899999999975 488887765544444 56899999999988732  344444544444


Q ss_pred             HHHHHHHHhHHh-cCceeeEeccceeE-EEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCC
Q 011669          386 YLKERLTALKDK-YGIIGDVRGRGFLL-GVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPP  458 (480)
Q Consensus       386 ~l~~~L~~l~~~-~~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~  458 (480)
                      ..++.|.+..++ ++.+..+++.|.++ |+++...       ......+.+.|+ ++||++.++..+    .+++||+  
T Consensus       301 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--  371 (392)
T 3b1d_A          301 ENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDY-------GLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN--  371 (392)
Confidence            455555444433 34444556666655 5776321       012356778886 789999987543    3689999  


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 011669          459 LCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~l~  478 (480)
                      +..+++++++++++|+++++
T Consensus       372 ~~~~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          372 IAAPKSLVEEICKRIVCCLP  391 (392)
Confidence            45578999999999998875

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=8.2e-33  Score=276.06  Aligned_cols=338  Identities=16%  Similarity=0.097  Sum_probs=244.7

Q ss_pred             eeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCH
Q 011669           88 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSG  167 (480)
Q Consensus        88 g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sG  167 (480)
                      .+|.++++.+|+++|||.+|...  ++ .+|+|.+++.+++.+.    ..|+.+...+++++|+++++.+.++|++++||
T Consensus         5 ~~~~~~~~~~~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~   77 (354)
T 3ly1_A            5 PESAAFTAPSTDNPIRINFNENP--LG-MSPKAQAAARDAVVKA----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGS   77 (354)
T ss_dssp             ----CCCCCCSSSCEECSSCCCS--SC-CCHHHHHHHHHTGGGT----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred             cccccccCCCCCceEEccCCCCC--CC-CCHHHHHHHHHHHhhC----cCCCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence            36778889999999999988744  33 7899999999988753    34566778899999999998777899999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++|++.+++.+..  +++.|++..++|++........             |...+.+|...  .+..|    .+++++.+
T Consensus        78 ~~a~~~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~--~~~~d----~~~l~~~l  136 (354)
T 3ly1_A           78 SEGIRAAIEAYAS--LEAQLVIPELTYGDGEHFAKIA-------------GMKVTKVKMLD--NWAFD----IEGLKAAV  136 (354)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEESSSCTHHHHHHHHT-------------TCEEEEECCCT--TSCCC----HHHHHHHH
T ss_pred             HHHHHHHHHHHhC--CCCeEEECCCCchHHHHHHHHc-------------CCEEEEecCCC--CCCCC----HHHHHHHh
Confidence            9999999997643  6789999999999876544432             22222222211  12234    67888888


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-c---ccc-CCCcceeee
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-F---EAH-GVVPDIVTM  322 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~---~~~-~~~pDivt~  322 (480)
                      ++.  .++++|+++.+++++|.+. +.+.+++|.++| +||+++|+||+|++|.+.+ .... .   +.. +....+.++
T Consensus       137 ~~~--~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~  211 (354)
T 3ly1_A          137 AAY--SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDP-RFRSISPMITQGAENIILLKTF  211 (354)
T ss_dssp             HTC--SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCT-TCCCSHHHHHTTCSSEEEEEES
T ss_pred             ccC--CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhcccc-ccCCHHHHhhhcCCCEEEEeeC
Confidence            631  3678888888888888876 555667777777 6999999999999988766 2211 1   222 444556689


Q ss_pred             ccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          323 AKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       323 sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      ||.+| +|+|+||+++++++++.+.....  .++.|+++++++.++|+..+. ++..++++++.+++++.|+++    + 
T Consensus       212 sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~-  284 (354)
T 3ly1_A          212 SKIHAMAGMRVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----K-  284 (354)
T ss_dssp             SSTTCCGGGCCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----T-
T ss_pred             hhhccChhhhheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-
Confidence            99999 89999999999999998876543  378899999999988863211 233444455555555555544    2 


Q ss_pred             eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       401 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +...++.|.++++++..          ....+.+.|.++||++. +..  ..+++||++.   +++|+++++++|+++++
T Consensus       285 ~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~  350 (354)
T 3ly1_A          285 LPYLPSEGNFVFHQLVV----------PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---TPQEMQWVADTMREFRK  350 (354)
T ss_dssp             CCBCCCCSSEEEEECSS----------CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred             CeECCCCceEEEEECCC----------CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence            33346678888888732          14678888999999988 432  2479999943   89999999999999886


Q ss_pred             h
Q 011669          479 K  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       351 ~  351 (354)
T 3ly1_A          351 K  351 (354)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.4e-33  Score=282.50  Aligned_cols=336  Identities=15%  Similarity=0.062  Sum_probs=235.3

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----CCC--CC-EEEEeCCH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----PGN--LK-VVFFTNSG  167 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~~~--~~-~v~f~~sG  167 (480)
                      .+|+++|||.+|..  .+| .+|.|.+++.+++.+.  ....|.. ....++++++++++    +.+  .+ +|+|++||
T Consensus        22 ~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~   96 (376)
T 2dou_A           22 ERGVGLIDLSIGST--DLP-PPEAPLKALAEALNDP--TTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGS   96 (376)
T ss_dssp             HTTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCG--GGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSH
T ss_pred             ccCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCC--CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence            45888999998876  456 4899999999988652  1123444 35677888888776    543  24 89999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++|++.+++.+..  ++++|++.+++||++...+....             ...+.+|.  ...|..|    .+++++.+
T Consensus        97 ~~a~~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~--~~~~~~d----~~~l~~~l  155 (376)
T 2dou_A           97 QEGLAHLLLALTE--PEDLLLLPEVAYPSYFGAARVAS-------------LRTFLIPL--REDGLAD----LKAVPEGV  155 (376)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHTT-------------CEEEEECB--CTTSSBC----GGGSCHHH
T ss_pred             HHHHHHHHHHhcC--CCCEEEECCCCcHhHHHHHHHcC-------------CEEEEeeC--CCCCCCC----HHHHHHhh
Confidence            9999999987643  56889999999999876554322             22222221  1122223    34566666


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccc---cCCCcceeeec
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEA---HGVVPDIVTMA  323 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~---~~~~pDivt~s  323 (480)
                      +    +++++|+++..++++|.+ .+.+++++|.++|++||+++|+||+|++|.++| .... ...   .+..+++.++|
T Consensus       156 ~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~s  229 (376)
T 2dou_A          156 W----REAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLS  229 (376)
T ss_dssp             H----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHH
T ss_pred             c----cCceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecch
Confidence            4    257788887667888876 477899999999999999999999999987766 2211 222   23445566899


Q ss_pred             cccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (480)
Q Consensus       324 K~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  402 (480)
                      |.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+..  +++.++.++..+..++.+.+..+++  +.
T Consensus       230 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~  305 (376)
T 2dou_A          230 KSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV--LS  305 (376)
T ss_dssp             HHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT--SE
T ss_pred             hhcCChhheeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence            9998 79999999999999988876555567788999999998888642  3334444433334444444433333  22


Q ss_pred             eEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          403 DVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       403 ~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      ...+ .|+++++++...        .....+.+.|+++||++.++..+    .+++||+++  .+++++++++++|++++
T Consensus       306 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          306 LLPPRATMYLWGRLPEG--------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALV--RPLEELLEAAKRIREAL  375 (376)
T ss_dssp             ECCCCBSSEEEEECCTT--------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHTC
T ss_pred             ccCCCeeEEEEEECCCC--------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence            2333 466788887421        11356888899999999987543    478999976  38999999999998865

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=100.00  E-value=2.9e-33  Score=280.73  Aligned_cols=333  Identities=13%  Similarity=0.096  Sum_probs=232.5

Q ss_pred             eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHH
Q 011669           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELA  174 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~A  174 (480)
                      +.||+++|||.+|..  .+| .+|+|.+++.+++.+.    ..|......+++++|+++++.+.++|+|++||++|++.+
T Consensus        20 ~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~   92 (364)
T 1lc5_A           20 GISPDQLLDFSANIN--PLG-MPVSVKRALIDNLDCI----ERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTV   92 (364)
T ss_dssp             TSCGGGSEECSSCCC--TTC-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred             CCCccceEEeccccC--CCC-CCHHHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHH
Confidence            567889999988874  467 7899999999988653    234445578899999999876677899999999999999


Q ss_pred             HHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCc
Q 011669          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH  254 (480)
Q Consensus       175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~  254 (480)
                      ++.+   .+ ++|++.+++||++...+....             ...+.+|......|..     ++++.+.+.    .+
T Consensus        93 ~~~~---~g-d~vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~-----l~~~~~~~~----~~  146 (364)
T 1lc5_A           93 ASGL---KP-RRAMIVTPGFAEYGRALAQSG-------------CEIRRWSLREADGWQL-----TDAILEALT----PD  146 (364)
T ss_dssp             HHHH---CC-SEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCGGGTTCC-----CTTHHHHCC----TT
T ss_pred             HHHc---CC-CeEEEeCCCcHHHHHHHHHcC-------------CeEEEEeCCcccccch-----hHHHHHhcc----CC
Confidence            9977   34 899999999999776554332             1111111111011110     122222221    24


Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccCCCcceeeeccccc-cCccc
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGIPL  332 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~~~pDivt~sK~~g-~G~pi  332 (480)
                      +++|++...++++|.+ .+.+++++|.++|++||+++|+||+|++|++.+...... +..+....+.++||.++ +|+|+
T Consensus       147 ~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  225 (364)
T 1lc5_A          147 LDCLFLCTPNNPTGLL-PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRL  225 (364)
T ss_dssp             CCEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCC
T ss_pred             CCEEEEeCCCCCCCCC-CCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccce
Confidence            5555554447777876 477899999999999999999999999887654222221 22344455668999999 89999


Q ss_pred             cccc-cCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeE
Q 011669          333 GAVV-TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (480)
Q Consensus       333 g~v~-~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  411 (480)
                      ||++ +++++++.+....  .+++.|+++++++.++|+.   .++.++.++..+..++.+.+..++++.+...++.|.++
T Consensus       226 G~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~  300 (364)
T 1lc5_A          226 GYLVNSDDAAMARMRRQQ--MPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYL  300 (364)
T ss_dssp             EEEECCCHHHHHHHHHHS--CTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEE
T ss_pred             EEEEECCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCeEE
Confidence            9999 9999988776533  4678899999998888763   33444444444444455544444454455556778888


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++++..+          ...+.+.|.++||++.++..+    .+++||++   .+++++++++++|++++++
T Consensus       301 ~~~~~~~----------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~~~  359 (364)
T 1lc5_A          301 LLRCERE----------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERLLAALRNVLTG  359 (364)
T ss_dssp             EEEESCT----------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHC--
T ss_pred             EEECCCc----------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEe---CCHHHHHHHHHHHHHHhhc
Confidence            8877321          234778888999999987543    47899994   3789999999999987654

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=8.7e-34  Score=290.74  Aligned_cols=349  Identities=11%  Similarity=0.045  Sum_probs=239.0

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C---CCCCEEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P---GNLKVVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~---~~~~~v~f~~sGse  169 (480)
                      ++.+|||.+|.+.. .||++|+|.+++.+++++.......|.. ....++++++++++    +   .+.++|++++||++
T Consensus        42 ~~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~  120 (425)
T 1vp4_A           42 DKDAISFGGGVPDP-ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ  120 (425)
T ss_dssp             STTCEECCCCSCCG-GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred             CCCceeCCCCCCCc-ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence            56799999998754 4899999999999998763211112222 23344555555544    5   45678999999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      |++.+++.+..  +++.|++.+++||++........             ...+.+|....   +.|    .+++++.++.
T Consensus       121 al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~---~~d----~~~l~~~l~~  178 (425)
T 1vp4_A          121 ALDLIGKLFLD--DESYCVLDDPAYLGAINAFRQYL-------------ANFVVVPLEDD---GMD----LNVLERKLSE  178 (425)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTT-------------CEEEEEEEETT---EEC----HHHHHHHHHH
T ss_pred             HHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcC-------------CEEEEeccCCC---CCC----HHHHHHHHHh
Confidence            99999997643  56889999999999776544321             11111111100   013    5677777763


Q ss_pred             c----CCCceEEEE-EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc---cCCCcceee
Q 011669          250 G----TSGHVAGFL-SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA---HGVVPDIVT  321 (480)
Q Consensus       250 ~----~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~---~~~~pDivt  321 (480)
                      .    ...++++|+ +...++++|.+ .+.+++++|.++|++||+++|+||+|++|.++|.....+..   .+....+.+
T Consensus       179 ~~~~~~~~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s  257 (425)
T 1vp4_A          179 FDKNGKIKQVKFIYVVSNFHNPAGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNT  257 (425)
T ss_dssp             HHHTTCGGGEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEE
T ss_pred             hhhcccCCCceEEEECCCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEec
Confidence            1    012677874 55577788876 47789999999999999999999999998876632222222   233344568


Q ss_pred             eccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHh
Q 011669          322 MAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDK  397 (480)
Q Consensus       322 ~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~  397 (480)
                      +||.+++|+|+||+++++++++.+.......+++.|+++++++.++|+....+    ...+++++..+++.+.|++....
T Consensus       258 ~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  337 (425)
T 1vp4_A          258 FSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSD  337 (425)
T ss_dssp             STTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             cccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999888876555567788999999999999864212    33444555556666665553211


Q ss_pred             cCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHH
Q 011669          398 YGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       398 ~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l  470 (480)
                      ++.+..+ +..|+++|+++....        ....+.+.|.++||++.++..+      .+++||+++.. +++++++++
T Consensus       338 ~~g~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l  408 (425)
T 1vp4_A          338 IPGVKWVKSEGGLFIWLTLPEGF--------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGI  408 (425)
T ss_dssp             STTCEECCCSBSSEEEEECCTTC--------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHH
T ss_pred             CCceEEecCCccEEEEEEcCCCC--------CHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHH
Confidence            1123332 455788888874311        1235778888889999987533      47899998764 899999999


Q ss_pred             HHHHHHHhh
Q 011669          471 DVMDYSLSK  479 (480)
Q Consensus       471 ~~l~~~l~~  479 (480)
                      ++|++++++
T Consensus       409 ~~l~~~l~~  417 (425)
T 1vp4_A          409 KRLREVVLE  417 (425)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-33  Score=286.65  Aligned_cols=345  Identities=13%  Similarity=0.092  Sum_probs=236.9

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccc-cccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HST-VLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEAN  171 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~-~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~  171 (480)
                      .|+.+|||..|.+.  ++ .+|.|.+++.+++++..  +.. ..+..+...++++.+.+.++  .+.++|++|+||++|+
T Consensus        55 ~~~~~i~l~~g~~~--~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al  131 (447)
T 3b46_A           55 QGRELINLGQGFFS--YS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI  131 (447)
T ss_dssp             TTSCCEECCCCSCS--SC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred             cCCCeEEccCCCCC--CC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence            45679999998764  34 68999999999887521  111 11122334445555444443  2346899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC--------cCCCCCCChHHHHHHH
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP--------YRGVFGADGEMYAKDV  243 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~--------~~~~~~~d~~~~~~~l  243 (480)
                      +.+++.+..  ++++|++.+++||++...+..... .          +..++....        ....|..|    .++|
T Consensus       132 ~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~-~----------~~~v~~~~~~~~~~~~~~~~~~~~d----~~~l  194 (447)
T 3b46_A          132 LSCLMGLLN--AGDEVIVFEPFFDQYIPNIELCGG-K----------VVYVPINPPKELDQRNTRGEEWTID----FEQF  194 (447)
T ss_dssp             HHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTC-E----------EEEEEEECCGGGGTSCBCSTTSEEC----HHHH
T ss_pred             HHHHHHHcC--CCCEEEEeCCCchhHHHHHHHcCC-E----------EEEEeCCCccccccccccccCcccC----HHHH
Confidence            999997743  678999999999987765433221 1          111111000        00122233    5677


Q ss_pred             HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--Ccccc--cccCCCcce
Q 011669          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGF--EAHGVVPDI  319 (480)
Q Consensus       244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~~~~~--~~~~~~pDi  319 (480)
                      ++.++    +++++|++++.+|++|.+. +++++++|.++|++||+++|+||+|++|.++|.  .+..+  +..+..+++
T Consensus       195 ~~~l~----~~~~~v~l~~p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i  269 (447)
T 3b46_A          195 EKAIT----SKTKAVIINTPHNPIGKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTV  269 (447)
T ss_dssp             HTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEE
T ss_pred             HHhhc----cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEE
Confidence            76664    3688888888889899774 688999999999999999999999999887762  12222  124667778


Q ss_pred             eeeccccc-cCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHH
Q 011669          320 VTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK----LQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       320 vt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~----~~~~~~~~~~~l~~~L~~  393 (480)
                      .++||.++ +|+|+||+++ ++++++.+....+..+++.++++++++.++|+....++    ..++++++.+++.+.|++
T Consensus       270 ~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  349 (447)
T 3b46_A          270 GSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE  349 (447)
T ss_dssp             EEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999 7999999999 99999888765556788899999999999998764344    344455555555555555


Q ss_pred             hHHhcCceeeEeccceeEEEEEecCCCcCCCC----------HHHHHHHHHHHH-HcCceeeccCcC---------CCEE
Q 011669          394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA----------KAETLYIMDKMK-EMGVLVGKGGFY---------GNVF  453 (480)
Q Consensus       394 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~----------~~~~~~~~~~l~-~~Gv~v~~~~~~---------~~~i  453 (480)
                      +    ++....+..|+++|+++....   .|.          ......+.+.|. ++||++.++..+         .+++
T Consensus       350 ~----g~~~~~~~~g~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~i  422 (447)
T 3b46_A          350 L----GLPYTAPEGTYFVLVDFSKVK---IPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLL  422 (447)
T ss_dssp             H----TCCEECCSBSSEEEEECTTCC---CCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEE
T ss_pred             C----CCeecCCCeeEEEEEeccccc---CccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEE
Confidence            3    322223455788888874311   010          113456777776 689999987533         5789


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Q 011669          454 RITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~  475 (480)
                      ||+++  .++++|++++++|++
T Consensus       423 Rls~~--~~~e~l~~~~~~l~~  442 (447)
T 3b46_A          423 RFAVC--KDDAYLENAVERLKL  442 (447)
T ss_dssp             EEECC--SCHHHHHHHHHHGGG
T ss_pred             EEEEe--CCHHHHHHHHHHHHH
Confidence            99976  589999999999987

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=3.3e-32  Score=273.16  Aligned_cols=331  Identities=15%  Similarity=0.099  Sum_probs=243.4

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk  176 (480)
                      .+.+|||.+|...  + ..+|+|.+++.+++....  ...|.++...+++++|+++++. +.++|+|++||++|++.+++
T Consensus        29 ~~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~--~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~  103 (367)
T 3euc_A           29 SHGLVKLDAMENP--Y-RLPPALRSELAARLGEVA--LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL  103 (367)
T ss_dssp             CTTCEECCSSCCC--C-CCCHHHHHHHHHHHHHHH--TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred             CCCeeEccCCCCC--C-CCCHHHHHHHHHHhhhhh--hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence            3679999988733  3 478999999999987531  2345556678999999999876 56799999999999999998


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      .+..  ++++|++.+++|+++.......             |...+.+|...  .|..|    .+++++.++..   +++
T Consensus       104 ~~~~--~gd~Vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~l~~~---~~~  159 (367)
T 3euc_A          104 AAAR--PGAKVMAPVPGFVMYAMSAQFA-------------GLEFVGVPLRA--DFTLD----RGAMLAAMAEH---QPA  159 (367)
T ss_dssp             HTCC--TTCEEEEEESCSCCSCHHHHTT-------------TCEEEEEECCT--TSCCC----HHHHHHHHHHH---CCS
T ss_pred             HHcC--CCCEEEEcCCCHHHHHHHHHHc-------------CCeEEEecCCC--CCCCC----HHHHHHHhhcc---CCC
Confidence            7633  5688999999999876654332             22222222111  22234    67888888642   567


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHh--CCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGA  334 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~  334 (480)
                      +|+++.++|++|.+. +.+.+++|.++|++|  |+++|+||+|++|+..+ .....+..+..+++.++||...+|+|+||
T Consensus       160 ~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~G~r~G~  237 (367)
T 3euc_A          160 IVYLAYPNNPTGNLF-DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMSRLTDFGNLLVMRTVSKLGLAGIRLGY  237 (367)
T ss_dssp             EEEEESSCTTTCCCC-CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGGGGGTCTTEEEEEECCCTTSCSCCEEE
T ss_pred             EEEEcCCCCCCCCCC-CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHHHHhhCCCEEEEecchhhcccccCcee
Confidence            888888888888775 677899999999999  99999999999987554 33334445556777799999337899999


Q ss_pred             cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                      +++++++++.+....  .+++.|+++++++.++|+.   .++.++..+....+++.+.+..++++.+...++.|.++++.
T Consensus       238 ~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~  312 (367)
T 3euc_A          238 VAGDPQWLEQLDKVR--PPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLAR  312 (367)
T ss_dssp             EEECHHHHHHHGGGC--CSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEE
T ss_pred             eeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEE
Confidence            999999998887543  4678899999999999874   33333333334444444444444454455566778888887


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +.           ....+.+.|.++||++.++..+    .+++||+++   +++|+++++++|+++++
T Consensus       313 ~~-----------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          313 VP-----------DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             CS-----------CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             CC-----------CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence            63           1466888899999999987542    479999944   99999999999999875

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=9.9e-33  Score=277.76  Aligned_cols=334  Identities=11%  Similarity=-0.003  Sum_probs=234.1

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCCC--CCCEEEEeCCHHHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEANE  172 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~~--~~~~v~f~~sGseA~~  172 (480)
                      .+| ++|||.+|...  ++ .+|.|.+|+.+++....+... .+..+...++++.+.+.++.  +.++|+|++||++|++
T Consensus        21 ~~g-~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~   96 (376)
T 3ezs_A           21 PKK-RGLDLGIGEPQ--FE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF   96 (376)
T ss_dssp             CSS-CCCBCSSCCCC--SC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred             ccC-CEEEeCCCCCC--CC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence            467 89999988754  44 689999999988744322111 12234455566666555454  5688999999999999


Q ss_pred             HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (480)
Q Consensus       173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (480)
                      .+++.+...++++.|++.+++||++........             ...+.+|......+.      . ++++.+..   
T Consensus        97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~------~-~l~~~~~~---  153 (376)
T 3ezs_A           97 NFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIK-------------AKSLLMPLTKENDFT------P-SLNEKELQ---  153 (376)
T ss_dssp             HHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCGGGTSC------C-CCCHHHHH---
T ss_pred             HHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcC-------------CEEEEcccCCCCCcc------h-hHHhhhcc---
Confidence            999987653337899999999998776544332             222222211111111      1 34444432   


Q ss_pred             CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc---------ccCCCcceeeec
Q 011669          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE---------AHGVVPDIVTMA  323 (480)
Q Consensus       253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~---------~~~~~pDivt~s  323 (480)
                       ++++|++...+|++|.+. +.+.+++|.++|++||+++|+||+|++|.++| ......         ..+..+.+.++|
T Consensus       154 -~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~s  230 (376)
T 3ezs_A          154 -EVDLVILNSPNNPTGRTL-SLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLS  230 (376)
T ss_dssp             -HCSEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEEST
T ss_pred             -CCCEEEEcCCCCCcCCCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecch
Confidence             456677666688888765 77789999999999999999999999998877 333321         345566677999


Q ss_pred             cccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (480)
Q Consensus       324 K~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  402 (480)
                      |.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+.   ++..++.++.....++.+.+..+  ++ .
T Consensus       231 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~-~  304 (376)
T 3ezs_A          231 KRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NT-L  304 (376)
T ss_dssp             TTTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TC-C
T ss_pred             hccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CC-C
Confidence            9997 7999999999999999887666667888999999999998873   23334444443444444433322  22 2


Q ss_pred             eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       403 ~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                       .+..|+++|+++.           ....+.+.|++ +||++.++..+      .+++||+++  .|++++++++++|++
T Consensus       305 -~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~  370 (376)
T 3ezs_A          305 -IYPYSFYVYLPVQ-----------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIET  370 (376)
T ss_dssp             -CCSBSSEEEEECS-----------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred             -CCCcceEEEEECC-----------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence             5567888888873           14567888887 89999987433      479999966  499999999999999


Q ss_pred             HHhh
Q 011669          476 SLSK  479 (480)
Q Consensus       476 ~l~~  479 (480)
                      ++++
T Consensus       371 ~l~~  374 (376)
T 3ezs_A          371 YREN  374 (376)
T ss_dssp             HHCC
T ss_pred             HHHh
Confidence            9875

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=8.2e-33  Score=282.21  Aligned_cols=343  Identities=13%  Similarity=0.080  Sum_probs=233.0

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC----CC--CC-CEEEEeCCH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----PG--NL-KVVFFTNSG  167 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~----~~--~~-~~v~f~~sG  167 (480)
                      .+|+++|||.+|..  .+| .+|.|.+++.+++.+..  ...|. .....++++.+++++    +.  +. ++|++++||
T Consensus        34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~  108 (412)
T 2x5d_A           34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQRED--THGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGS  108 (412)
T ss_dssp             HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC-----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCH
T ss_pred             hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCC--CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCCh
Confidence            57889999998875  456 78999999998876531  11222 233455666666555    42  44 589999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++|++.+++.+.  .+++.|++.+++||+....+....             ...+.+|....    ++-....+++++.+
T Consensus       109 ~~a~~~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~----~~~~~d~~~l~~~i  169 (412)
T 2x5d_A          109 KEGLAHLMLATL--DHGDTILVPNPSYPIHIYGAVIAG-------------AQVRSVPLVPG----IDFFNELERAIRES  169 (412)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHHT-------------CEEEEEECSTT----SCHHHHHHHHHHTE
T ss_pred             HHHHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHcC-------------CEEEEeecCCc----cCCCCCHHHHHHhc
Confidence            999999999764  256889999999999776554322             22222221100    01111245666665


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc----cCCCcceeeec
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMA  323 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~----~~~~pDivt~s  323 (480)
                      +    .++++|++...+|++|.+ .+.+++++|.++|++||+++|+||+|++|.++|.....+..    .+..+.+.++|
T Consensus       170 ~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~s  244 (412)
T 2x5d_A          170 I----PKPRMMILGFPSNPTAQC-VELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLS  244 (412)
T ss_dssp             E----SCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC
T ss_pred             c----cCceEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCc
Confidence            4    256666665557778876 47789999999999999999999999998776632222222    23444566899


Q ss_pred             cccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       324 K~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      |.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+..++  +...++++++.+++.+.|+++  .+. 
T Consensus       245 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-  321 (412)
T 2x5d_A          245 KSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA--GWM-  321 (412)
T ss_dssp             -CCSCTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH--TCC-
T ss_pred             cccCCcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCE-
Confidence            9999 8999999999999998887655556788999999999999874322  344555666666776666664  222 


Q ss_pred             eeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          401 IGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       401 ~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                        .+++. |+++|+++.....     ......+.+.|++ +||++.++..+    .+++||+++.  +++++++++++|.
T Consensus       322 --~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~  392 (412)
T 2x5d_A          322 --VENPKASMYVWAKIPEPYA-----HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIK  392 (412)
T ss_dssp             --CCCCSBSSEEEEECCTTTG-----GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHH
T ss_pred             --ecCCCeeeEEEEEcCCccC-----CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHH
Confidence              23344 6678887732100     0014567777765 69999987543    4789999775  8999999999999


Q ss_pred             HHHhh
Q 011669          475 YSLSK  479 (480)
Q Consensus       475 ~~l~~  479 (480)
                      +++++
T Consensus       393 ~~l~~  397 (412)
T 2x5d_A          393 AMFRA  397 (412)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98865

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=6.1e-32  Score=276.33  Aligned_cols=355  Identities=11%  Similarity=0.056  Sum_probs=235.6

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--c--cccccCChHHHHHHHHHHHhCC--CCC-CEEEEeCCHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--H--STVLYLNHAIADFAEALASKMP--GNL-KVVFFTNSGTEAN  171 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~--~~~~~~~~~~~~l~e~L~~~~~--~~~-~~v~f~~sGseA~  171 (480)
                      ..+|||..|....   ..+|.|.+++.+++.+..  +  ....+..+....+++.+.+.++  .+. ++|+|++||++|+
T Consensus        28 ~~~i~l~~g~~~~---~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~  104 (422)
T 3fvs_A           28 HDVVNLGQGFPDF---PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL  104 (422)
T ss_dssp             SCCEECCCSSCSS---CCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred             CCceEeCCCCCCC---CCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence            3578998887543   378999999999988632  1  1111122344455555554443  233 5799999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCC-----C---cCCCCCCChHHHHHHH
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD-----P---YRGVFGADGEMYAKDV  243 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-----~---~~~~~~~d~~~~~~~l  243 (480)
                      +.+++.+.  .+++.|++.+++||++......... .          +..++...     .   ....|..|    .+++
T Consensus       105 ~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~-~----------~~~~~~~~~~~~~G~~~~~~~~~~d----~~~l  167 (422)
T 3fvs_A          105 FTAFQALV--DEGDEVIIIEPFFDCYEPMTMMAGG-R----------PVFVSLKPGPIQNGELGSSSNWQLD----PMEL  167 (422)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-E----------EEEEECBCCCCCSSSCCBGGGSBCC----HHHH
T ss_pred             HHHHHHHc--CCCCEEEEcCCCchhhHHHHHHcCC-E----------EEEEecccccccccccccccCCCCC----HHHH
Confidence            99999763  3678899999999997655443321 1          11111110     0   00112223    5667


Q ss_pred             HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc----CCCcce
Q 011669          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDI  319 (480)
Q Consensus       244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~----~~~pDi  319 (480)
                      ++.++    .++++|++++++|++|.+. +++.+++|.++|++||+++|+||+|++|.++|.....+...    +..+++
T Consensus       168 ~~~~~----~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~  242 (422)
T 3fvs_A          168 AGKFT----SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTI  242 (422)
T ss_dssp             HTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEE
T ss_pred             HhhcC----CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEE
Confidence            66664    3688888888899999875 78889999999999999999999999998877322222222    333556


Q ss_pred             eeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHH
Q 011669          320 VTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI-----QKDKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       320 vt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i-----~~~~~~~~~~~~~~~l~~~L~~  393 (480)
                      .++||.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+..     ..+++.++.++..+..++.|.+
T Consensus       243 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  322 (422)
T 3fvs_A          243 GSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIR  322 (422)
T ss_dssp             EEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            68999999 89999999999999988876556678899999999999998741     1223333344433344444444


Q ss_pred             hHHhcCceeeEeccceeEEEEEecCCCcC-----CCCHHHHHHHHHHH-HHcCceeeccCcC---------CCEEEEeCC
Q 011669          394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLK-----TPAKAETLYIMDKM-KEMGVLVGKGGFY---------GNVFRITPP  458 (480)
Q Consensus       394 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~-----~~~~~~~~~~~~~l-~~~Gv~v~~~~~~---------~~~iRi~p~  458 (480)
                      ...++++.......|+++|+++.......     ........++++.+ .++||++.+|..+         .+++||+  
T Consensus       323 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--  400 (422)
T 3fvs_A          323 SLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC--  400 (422)
T ss_dssp             HHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE--
T ss_pred             HHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEE--
Confidence            33344443344566788888874310000     00000023455654 4679999987543         4789999  


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhC
Q 011669          459 LCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      +..+++++++++++|+++++++
T Consensus       401 ~~~~~e~i~~~l~~l~~~l~~l  422 (422)
T 3fvs_A          401 FVKDEATLQAMDEKLRKWKVEL  422 (422)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCC
T ss_pred             ecCCHHHHHHHHHHHHHHHhhC
Confidence            4559999999999999998764

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=4.3e-32  Score=278.37  Aligned_cols=349  Identities=14%  Similarity=0.095  Sum_probs=242.1

Q ss_pred             eCCCCEEEeccCCcccc-cCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCC-----CCCCEEEEeCCH
Q 011669           95 DENGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP-----GNLKVVFFTNSG  167 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~-----~~~~~v~f~~sG  167 (480)
                      +.+|+.+|||..|.+.. +-.+.+|.|.+|+.+++.+..  ...| ......++++++++++.     .+.++|++++||
T Consensus        50 ~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~  127 (427)
T 3dyd_A           50 PNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGK--YNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC  127 (427)
T ss_dssp             CCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCC--SSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred             ccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCc--CCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence            45688999999988543 123578999999999988642  1233 34556788888888876     456789999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++|++.+++.+..  +++.|++.+++|+++...+....             .....+|......|..|    .+++++.+
T Consensus       128 t~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~l  188 (427)
T 3dyd_A          128 SQAIDLCLAVLAN--PGQNILVPRPGFSLYKTLAESMG-------------IEVKLYNLLPEKSWEID----LKQLEYLI  188 (427)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEEEEGGGTTEEC----HHHHHSSC
T ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcC-------------CEEEEEecccccCCCCC----HHHHHHHh
Confidence            9999999998754  67899999999998765544332             22222211111112223    56666666


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee---eecc
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAK  324 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv---t~sK  324 (480)
                      +    .++++|++...+|++|.+ ++++++++|.++|++||+++|+||+|++|+++|..+..+...+..++++   +|||
T Consensus       189 ~----~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK  263 (427)
T 3dyd_A          189 D----EKTACLIVNNPSNPCGSV-FSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAK  263 (427)
T ss_dssp             C----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTT
T ss_pred             c----cCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccc
Confidence            4    246666666668888876 4888899999999999999999999999998874333444455555555   8999


Q ss_pred             ccc-cCccccccccC-------HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHH
Q 011669          325 GIG-NGIPLGAVVTT-------PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       325 ~~g-~G~pig~v~~~-------~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~  393 (480)
                      .++ +|+|+||++++       +++++.+.... ..+++.|+++++++.++|+....+   +..++++++.+++.+.|+ 
T Consensus       264 ~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~-  341 (427)
T 3dyd_A          264 RWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLS-QRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALA-  341 (427)
T ss_dssp             TSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHH-HHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cCCCcCcceEEEEecCcchhhHHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            987 69999999987       46776665432 236889999999999999853322   233444444445544444 


Q ss_pred             hHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC--CCEEEEeCCCCCCHHHHHHH
Q 011669          394 LKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY--GNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       394 l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~  469 (480)
                         +++.+..+ +..|+++++.+.....   |.......+++.|+ ++||++.++..+  .+++||+  +.+++++++++
T Consensus       342 ---~~~g~~~~~p~~g~~~~~~l~~~~~---~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis--~~~~~e~i~~~  413 (427)
T 3dyd_A          342 ---AIPGLRPVRPSGAMYLMVGIEMEHF---PEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVV--ITVPEVMMLEA  413 (427)
T ss_dssp             ---HSTTEEEECCSBTTEEEEEECGGGC---TTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--SCSCHHHHHHH
T ss_pred             ---cCCCceecCCCeeEEEEEecCHhhc---CCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEE--ECCCHHHHHHH
Confidence               34445444 4446777877742210   11112355677664 889999987543  4799999  45899999999


Q ss_pred             HHHHHHHHhh
Q 011669          470 VDVMDYSLSK  479 (480)
Q Consensus       470 l~~l~~~l~~  479 (480)
                      +++|++++++
T Consensus       414 l~~l~~~l~~  423 (427)
T 3dyd_A          414 CSRIQEFCEQ  423 (427)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=1.2e-31  Score=268.73  Aligned_cols=326  Identities=13%  Similarity=0.073  Sum_probs=230.5

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~  177 (480)
                      ++.+|||.+|...  ++ .+|+|.+++.+++...    ..|+++...+++++++++++.+.++|+|++||++|++.+++.
T Consensus        31 ~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~  103 (363)
T 3ffh_A           31 LTKITKLSSNENP--LG-TSKKVAAIQANSSVET----EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRV  103 (363)
T ss_dssp             CSCCEECSSCSCT--TC-CCHHHHHHHHTCBSCC----CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHH
T ss_pred             CCceEEccCCCCC--CC-CCHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHH
Confidence            3578999988654  44 7899999998866532    345566678999999999987778999999999999999997


Q ss_pred             HHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (480)
Q Consensus       178 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~  257 (480)
                      +.  .++++|++.+++|+++.........           .+..++...    .+..|    .+++++.++    +++++
T Consensus       104 ~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~i~----~~~~~  158 (363)
T 3ffh_A          104 LL--DTTTNTVMATPTFVQYRQNALIEGA-----------EVREIPLLQ----DGEHD----LEGMLNAID----EKTTI  158 (363)
T ss_dssp             HC--STTCEEEEEESSCHHHHHHHHHHTC-----------EEEEEECCT----TSCCC----HHHHHHHCC----TTEEE
T ss_pred             Hc--cCCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCCC----CCCcC----HHHHHHhcc----cCCCE
Confidence            63  3678999999999986655443321           122222221    12223    677877774    36888


Q ss_pred             EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcc----eeeeccccc-cCccc
Q 011669          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD----IVTMAKGIG-NGIPL  332 (480)
Q Consensus       258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pD----ivt~sK~~g-~G~pi  332 (480)
                      |+++++++++|.+.+ .+.+++|.+.|++ |+++|+||+|++|++ | ...........+|    +.++||.+| +|+|+
T Consensus       159 v~~~~p~nptG~~~~-~~~l~~l~~~~~~-~~~li~De~~~~~~~-~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~  234 (363)
T 3ffh_A          159 VWICNPNNPTGNYIE-LADIQAFLDRVPS-DVLVVLDEAYIEYVT-P-QPEKHEKLVRTYKNLIITRTFSKIYGLASARV  234 (363)
T ss_dssp             EEEESSCTTTCCCCC-HHHHHHHHTTSCT-TSEEEEECTTGGGCS-S-CCCCCGGGGGTCTTEEEEEESSSTTCCSSCCC
T ss_pred             EEEeCCCCCcCCCcC-HHHHHHHHHhCCC-CcEEEEeCchHhhcC-c-cccCHHHHhhcCCCEEEEeechhhhcCchhce
Confidence            888888899998764 4445555555544 999999999999877 5 3333222211223    558999999 89999


Q ss_pred             cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (480)
Q Consensus       333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  412 (480)
                      ||+++++++++.+....  .+++.|+++++++.++|+.   .++.++.++....+++.+.+..+++..+...++.|.+++
T Consensus       235 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~  309 (363)
T 3ffh_A          235 GYGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKD---QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVL  309 (363)
T ss_dssp             EEEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEE
T ss_pred             eeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEE
Confidence            99999999998887644  3788999999999999873   233444444444444444444444333445667788888


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      +++..          ....+.+.|.++||++.++..+  .+++||+++   +++|+++++++|++++
T Consensus       310 ~~~~~----------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l  363 (363)
T 3ffh_A          310 IDLGI----------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL  363 (363)
T ss_dssp             EECSS----------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             EECCC----------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence            87732          1467888999999999987544  479999965   9999999999998763

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=1.7e-32  Score=279.33  Aligned_cols=338  Identities=13%  Similarity=0.065  Sum_probs=232.2

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----CCC---CCEEEEeCCH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----PGN---LKVVFFTNSG  167 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~~~---~~~v~f~~sG  167 (480)
                      ..|+++|||.+|.+  .+| .+|.|.+++.+++++..  ...|.. ....++++++++++    +.+   .++|++++||
T Consensus        44 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~  118 (404)
T 2o1b_A           44 HGPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPE--NQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGT  118 (404)
T ss_dssp             CCSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHH--HHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSH
T ss_pred             cCCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCc
Confidence            35788999998886  456 58999999999875421  112222 23455556655554    543   2689999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++|++.+++.+..  +++.|++.+++||++...+.....           .+..++...   ..|..|    .++|++.+
T Consensus       119 ~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~~---~~~~~d----~~~l~~~l  178 (404)
T 2o1b_A          119 KNGLVAVPTCVIN--PGDYVLLPDPGYTDYLAGVLLADG-----------KPVPLNLEP---PHYLPD----WSKVDSQI  178 (404)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEEESCCSSHHHHHHHTTC-----------EEEEEECCT---TTCCCC----GGGSCHHH
T ss_pred             HHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHCCC-----------EEEEeccCc---ccCcCC----HHHHHHhh
Confidence            9999999997643  568899999999998765543221           111222111   122223    35566666


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cc---cCCCcceeeec
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EA---HGVVPDIVTMA  323 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~---~~~~pDivt~s  323 (480)
                      +    .++++|+++..++++|.+ .+.+++++|.++|++||+++|+||+|++|.++| ..... ..   .+..+.+.++|
T Consensus       179 ~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~s  252 (404)
T 2o1b_A          179 I----DKTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLS  252 (404)
T ss_dssp             H----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEEST
T ss_pred             c----cCceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecc
Confidence            4    257888887677888876 478899999999999999999999999987665 22211 11   23345566899


Q ss_pred             cccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       324 K~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      |.++ +|+|+||+++++++++.+.......+++.|+++++++.++|+..++  ++..++++++.+++.+.|+++    + 
T Consensus       253 K~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-  327 (404)
T 2o1b_A          253 KGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA----D-  327 (404)
T ss_dssp             TTTTCGGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----T-
T ss_pred             hhccCchhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----C-
Confidence            9998 8999999999999998887655556788999999999998875311  223334444455555555443    3 


Q ss_pred             eeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          401 IGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       401 ~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      +....+. |+++|+++...        .....+.+.|+ ++||++.++..+    .+++||+++.  +++++++++++|+
T Consensus       328 ~~~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~  397 (404)
T 2o1b_A          328 LPFVHAKGGIYVWLETPPG--------YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLT  397 (404)
T ss_dssp             CCEECCCBSSEEEEECCTT--------CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHH
T ss_pred             CeecCCCcceEEEEeCCCC--------CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHH
Confidence            2223333 56688887421        11356777776 579999987543    4689999774  7899999999999


Q ss_pred             HHHhh
Q 011669          475 YSLSK  479 (480)
Q Consensus       475 ~~l~~  479 (480)
                      +++++
T Consensus       398 ~~l~~  402 (404)
T 2o1b_A          398 ELAYL  402 (404)
T ss_dssp             GGGGG
T ss_pred             HHHHh
Confidence            88764

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=2.1e-32  Score=281.20  Aligned_cols=355  Identities=15%  Similarity=0.097  Sum_probs=237.2

Q ss_pred             EeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc---------cccC-ChHHHHHHHHHHHhCC--------
Q 011669           94 FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST---------VLYL-NHAIADFAEALASKMP--------  155 (480)
Q Consensus        94 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~---------~~~~-~~~~~~l~e~L~~~~~--------  155 (480)
                      ||.++|.+.++..|...+.++  ++.+.+++.++.....+..         ..|. .....+|+++|++++.        
T Consensus        31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~  108 (435)
T 3piu_A           31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT  108 (435)
T ss_dssp             CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred             CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence            788998888888888777665  6889998888766443320         1232 2334567777766654        


Q ss_pred             CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCC
Q 011669          156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD  235 (480)
Q Consensus       156 ~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d  235 (480)
                      .+.++|+|++||++||+.+++.++.  +++.|++.+++|++.........            |...+.++......|..|
T Consensus       109 ~~~~~v~~~~gg~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~------------g~~~~~~~~~~~~~~~~d  174 (435)
T 3piu_A          109 FDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRT------------GVEIVPIHCTSSNGFQIT  174 (435)
T ss_dssp             CCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTT------------CCEEEEEECCGGGTSCCC
T ss_pred             CCHHHEEEcCChHHHHHHHHHHhcC--CCCeEEECCCccccHHHHHHHhc------------CCEEEEeeCCCccCCcCC
Confidence            3467899999999999999998754  66889999999987765443222            222233322222233334


Q ss_pred             hHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc
Q 011669          236 GEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH  313 (480)
Q Consensus       236 ~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~  313 (480)
                          .++|+++++..  ...++++|+++++++++|.+. +.+.+++|.++|++||+++|+||+|++++++|..+......
T Consensus       175 ----~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~  249 (435)
T 3piu_A          175 ----ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEV  249 (435)
T ss_dssp             ----HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHH
T ss_pred             ----HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHh
Confidence                56777777531  123688888888888888764 67789999999999999999999999987777322222111


Q ss_pred             C----CC-----cc----eeeeccccc-cCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-----
Q 011669          314 G----VV-----PD----IVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-----  373 (480)
Q Consensus       314 ~----~~-----pD----ivt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-----  373 (480)
                      .    +.     +|    +.||||++| +|+|+||+++ ++++.+.+..  ...+++.++++++++.++|+....     
T Consensus       250 ~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (435)
T 3piu_A          250 LKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQHLLSAMLSDKKLTKNYI  327 (435)
T ss_dssp             HHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH--HGGGSCCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred             ccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH--HhhcCCCCHHHHHHHHHHhcChHHHHHHH
Confidence            1    11     33    558999999 8999999999 5667766653  234566788888888888763221     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC--
Q 011669          374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY--  449 (480)
Q Consensus       374 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~--  449 (480)
                      ++..+++++..+++++.|++    .+ +..+.+. |+++|+++.....  .+.......+++.|+++ ||++.++..+  
T Consensus       328 ~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~  400 (435)
T 3piu_A          328 AENHKRLKQRQKKLVSGLQK----SG-ISCLNGNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYEVHLNISPGSSCHC  400 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT----TT-CEECCCCSSSEEEEECGGGSS--SSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHHHh----cC-CcccCCCeeEEEEEEcccccc--cCCchhHHHHHHHHHHHCCEEEeCCcccCC
Confidence            12223333444444444433    33 2333444 4888988854211  11222355678888777 9999986543  


Q ss_pred             --CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          450 --GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       450 --~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                        .+++||+++.. |++++++++++|++++++
T Consensus       401 ~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~  431 (435)
T 3piu_A          401 TEPGWFRVCFANL-PERTLDLAMQRLKAFVGE  431 (435)
T ss_dssp             SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence              47899998655 999999999999998864

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=5e-32  Score=274.01  Aligned_cols=338  Identities=14%  Similarity=0.151  Sum_probs=232.0

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCCE-EEEeCCHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKV-VFFTNSGTEA  170 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~~-v~f~~sGseA  170 (480)
                      ..++||.+|..  .+| .+|+|.+++.+++++...   .|.. ....++++++++++    +  .+.++ |++++||++|
T Consensus        26 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a   99 (389)
T 1gd9_A           26 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLT---HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQA   99 (389)
T ss_dssp             SSCEECCCCSC--SSC-CCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHH
T ss_pred             cCeEecCCCCC--CCC-CCHHHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHH
Confidence            35789988875  355 689999999999876421   1221 12344555555444    4  34567 9999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      ++.+++.+.  .+++.|++.+++||+........             |...+.+|......|..|    .+++++.++  
T Consensus       100 ~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~--  158 (389)
T 1gd9_A          100 FLMGLSAFL--KDGEEVLIPTPAFVSYAPAVILA-------------GGKPVEVPTYEEDEFRLN----VDELKKYVT--  158 (389)
T ss_dssp             HHHHHTTTC--CTTCEEEEEESCCTTHHHHHHHH-------------TCEEEEEECCGGGTTCCC----HHHHHHHCC--
T ss_pred             HHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHC-------------CCEEEEeccCCccCCCCC----HHHHHHhcC--
Confidence            999998653  35689999999999976544322             122222221111122223    577887775  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-CC-Ccc--eeeecccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GV-VPD--IVTMAKGI  326 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-~~-~pD--ivt~sK~~  326 (480)
                        +++++|+++++++++|.+ .+++.+++|.++|++||+++|+||+|+++.++|.....+..+ +. ..|  +.++||.+
T Consensus       159 --~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  235 (389)
T 1gd9_A          159 --DKTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF  235 (389)
T ss_dssp             --TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT
T ss_pred             --cCceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhc
Confidence              267888888888888876 477899999999999999999999999988766213233222 21 234  45799999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK----DKLQNNAHVVGSYLKERLTALKDKYGII  401 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~----~~~~~~~~~~~~~l~~~L~~l~~~~~~~  401 (480)
                      + +|+|+||+++++++++.+.......+++.|+++++++.++|+....    ++..++++++.+++.+.|+++  .+...
T Consensus       236 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~  313 (389)
T 1gd9_A          236 AMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM--GLPTV  313 (389)
T ss_dssp             TCGGGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCC
T ss_pred             CCcccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc--CCeec
Confidence            8 7999999999999998887655566788899999999998875433    233444555555555555553  22221


Q ss_pred             eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       402 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                        ....|+++++++....       .....+.+.|+ ++||++.++..+    .+++||+++  .+++++++++++|+++
T Consensus       314 --~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~  382 (389)
T 1gd9_A          314 --KPKGAFYIFPRIRDTG-------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TAYEKLEEAMDRMERV  382 (389)
T ss_dssp             --CCCBTTEECCBCGGGT-------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred             --CCCeeeEEEEeccCCC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence              2233666777663210       11456788887 899999987543    468999976  3999999999999998


Q ss_pred             Hhh
Q 011669          477 LSK  479 (480)
Q Consensus       477 l~~  479 (480)
                      +++
T Consensus       383 ~~~  385 (389)
T 1gd9_A          383 LKE  385 (389)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            865

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=7e-32  Score=272.82  Aligned_cols=343  Identities=11%  Similarity=0.065  Sum_probs=236.4

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc--cccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST--VLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE  172 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~--~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~~  172 (480)
                      +|+.++||.+|.+  .+| .+|.+.+++.+++++.....  ..+..+...++++.+.+.++  .+.++|++++||++|++
T Consensus        28 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~  104 (388)
T 1j32_A           28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF  104 (388)
T ss_dssp             TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence            6889999998876  345 57999999999886532111  11122334444444444333  34578999999999999


Q ss_pred             HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (480)
Q Consensus       173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (480)
                      .+++.+.  .+++.|++.+++||+........             |...+.+|......|..|    .+++++.++    
T Consensus       105 ~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~----  161 (388)
T 1j32_A          105 NLMLAMI--EPGDEVIIPAPFWVSYPEMVKLA-------------EGTPVILPTTVETQFKVS----PEQIRQAIT----  161 (388)
T ss_dssp             HHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCGGGTTCCC----HHHHHHHCC----
T ss_pred             HHHHHhc--CCCCEEEEcCCCChhHHHHHHHc-------------CCEEEEecCCcccCCCCC----HHHHHHhcC----
Confidence            9999774  36688999999999876543221             222222222111123233    577887774    


Q ss_pred             CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC---cccccc--cCCCcceeeeccccc
Q 011669          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFEA--HGVVPDIVTMAKGIG  327 (480)
Q Consensus       253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~---~~~~~~--~~~~pDivt~sK~~g  327 (480)
                      +++++|+++++++++|.+. +++.+++|.++|++||+++|+||+|++|.+.|..   +..+..  .+..+++.++||.++
T Consensus       162 ~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~  240 (388)
T 1j32_A          162 PKTKLLVFNTPSNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA  240 (388)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred             cCceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccC
Confidence            2678888888888888774 6788999999999999999999999998776622   122221  345667779999998


Q ss_pred             -cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       328 -~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                       +|+|+||+++++++++.+.......+++.++++++++.++|+...+  ++..++++++.+++.+.|+++    +.+..+
T Consensus       241 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~  316 (388)
T 1j32_A          241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM----PGLECP  316 (388)
T ss_dssp             CTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC----TTCBCC
T ss_pred             CcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC----CCCccc
Confidence             7999999999999988877655567888999999999888874221  234455556666666665543    223222


Q ss_pred             ecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          405 RGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       405 ~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+. |+++++.+....       .....+.+.|++ +||++.++..+  .+++||+++  ++++++++++++|++++++
T Consensus       317 ~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~  386 (388)
T 1j32_A          317 KPDGAFYMFPSIAKTG-------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             CCCBTTEECCBCGGGT-------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeeEEEEEecCCCC-------CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            333 455566552200       114567888875 79999987544  478999975  6999999999999998865

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=1.8e-31  Score=268.12  Aligned_cols=327  Identities=12%  Similarity=0.061  Sum_probs=230.6

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc--ccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV--LYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE  172 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~--~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~~  172 (480)
                      +|+.++||.+|..  .+|+ +|.+.+++.+++.+..+...  .+..+...++++.+.+..+  .+.++|++++||++|++
T Consensus        27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~  103 (370)
T 2z61_A           27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF  103 (370)
T ss_dssp             TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred             cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence            4788999988876  4576 79999999999876321111  1122333444444444332  45578999999999999


Q ss_pred             HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (480)
Q Consensus       173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (480)
                      .+++.+..  ++++|++.+++||+........             |...+.+|        .|    .+++++.++    
T Consensus       104 ~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~--------~d----~~~l~~~l~----  152 (370)
T 2z61_A          104 FALSSIID--DGDEVLIQNPCYPCYKNFIRFL-------------GAKPVFCD--------FT----VESLEEALS----  152 (370)
T ss_dssp             HHHHHHCC--TTCEEEEESSCCTHHHHHHHHT-------------TCEEEEEC--------SS----HHHHHHHCC----
T ss_pred             HHHHHhcC--CCCEEEEeCCCchhHHHHHHHc-------------CCEEEEeC--------CC----HHHHHHhcc----
Confidence            99997743  5689999999999876654322             22222222        12    577887775    


Q ss_pred             CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc----CCCcceeeeccccc-
Q 011669          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTMAKGIG-  327 (480)
Q Consensus       253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~----~~~pDivt~sK~~g-  327 (480)
                      +++++|+++++++++|.+.+    ++ |.++|++||+++|+||+|+++.++| ....+...    +....+.++||.++ 
T Consensus       153 ~~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~  226 (370)
T 2z61_A          153 DKTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAM  226 (370)
T ss_dssp             SSEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTC
T ss_pred             cCceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCC
Confidence            26788888888888998876    55 9999999999999999999987766 33333222    22333558999998 


Q ss_pred             cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH-hhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-IQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~-i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                      +|+|+||+++++++++.+.......+++.|+++++++.++|+. ..+  ++..+++++..+++.+.|+++  .+...  .
T Consensus       227 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~  302 (370)
T 2z61_A          227 TGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF--GWEVN--N  302 (370)
T ss_dssp             GGGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCBCC--C
T ss_pred             ccceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc--CCeec--C
Confidence            7999999999999998887655556788999999999888865 221  334556666667777766654  22211  1


Q ss_pred             eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ...|+++++++..          ....+.+.|+ ++||++.++..+    .+++||+++  ++++++++++++|++++++
T Consensus       303 ~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~~  370 (370)
T 2z61_A          303 PIGAYYVFPNIGE----------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLNK  370 (370)
T ss_dssp             CCBTTEECCBCSS----------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC-
T ss_pred             CCcceEEEEecCC----------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHhC
Confidence            2236667766632          1456788887 789999987433    468999977  6999999999999998753

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=5e-32  Score=273.33  Aligned_cols=330  Identities=15%  Similarity=0.149  Sum_probs=236.4

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar  179 (480)
                      +|||.+|...  ++ .+|.+.+++.+++.+.    ..|.. ....+++++|+++++.+.++|++++||++|++.+++.+.
T Consensus        27 ~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~   99 (381)
T 1v2d_A           27 AVNLGQGFPS--NP-PPPFLLEAVRRALGRQ----DQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV   99 (381)
T ss_dssp             CEECCCCSCS--SC-CCHHHHHHHHHHTTTS----CSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred             eEEecCCCCC--CC-CCHHHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence            7899888763  45 6899999999988762    22333 256789999999988766789999999999999999874


Q ss_pred             hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEE
Q 011669          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (480)
Q Consensus       180 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi  259 (480)
                        .++++|++.+++||+....... .+.          .+..++.+. +...+..|    .+++++.++    +++++|+
T Consensus       100 --~~gd~Vl~~~~~~~~~~~~~~~-~g~----------~~~~v~~~~-~~~~~~~d----~~~l~~~l~----~~~~~v~  157 (381)
T 1v2d_A          100 --GPGDEVVVLEPFFDVYLPDAFL-AGA----------KARLVRLDL-TPEGFRLD----LSALEKALT----PRTRALL  157 (381)
T ss_dssp             --CTTCEEEEEESCCTTHHHHHHH-TTC----------EEEEEECEE-ETTEEECC----HHHHHTTCC----TTEEEEE
T ss_pred             --CCCCEEEEcCCCchhHHHHHHH-cCC----------EEEEEeCCC-CCccCCcC----HHHHHHhcC----cCCEEEE
Confidence              3678999999999987654322 111          112222210 00012223    567776663    3688888


Q ss_pred             EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc--ccCCCcceeeeccccc-cCccccccc
Q 011669          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE--AHGVVPDIVTMAKGIG-NGIPLGAVV  336 (480)
Q Consensus       260 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~--~~~~~pDivt~sK~~g-~G~pig~v~  336 (480)
                      ++++++++|.+. +.+++++|.++|++||+++|+||+|++|.+ |.....+.  ..+..+++.++||.++ +|+|+||++
T Consensus       158 ~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~  235 (381)
T 1v2d_A          158 LNTPMNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIV  235 (381)
T ss_dssp             EESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEE
T ss_pred             ECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEE
Confidence            888888888774 678999999999999999999999998854 41111121  3466777889999998 799999999


Q ss_pred             cCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--h--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669          337 TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--K--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (480)
Q Consensus       337 ~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  412 (480)
                      +++++++.+.......+++.++++++++.++|+...  +  ++..++++++.+++.+.|+++  .+...  ....|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~  311 (381)
T 1v2d_A          236 GPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM--GLRVY--VPEGTYFLM  311 (381)
T ss_dssp             CCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT--TCCEE--CCSBSSEEE
T ss_pred             eCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC--CCEec--CCCcceEEE
Confidence            999988887655455678889999999999998652  2  345566666777777776663  22211  122367778


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++...           + +.+.|.++||++.++..+      .+++||+++.  +++++++++++|++++++
T Consensus       312 ~~~~~~-----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~  370 (381)
T 1v2d_A          312 AELPGW-----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNS  370 (381)
T ss_dssp             EECTTC-----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC--
T ss_pred             EecChH-----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence            776321           1 566778999999887432      4689999775  999999999999988754

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=7.4e-32  Score=273.10  Aligned_cols=335  Identities=17%  Similarity=0.192  Sum_probs=238.8

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC----C--CCCCEEEEeCCHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGTE  169 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~----~--~~~~~v~f~~sGse  169 (480)
                      +|+.+|||.+|.+  .+|+ +|.+.+++.+++.+...   .|.. ....++++.+++++    +  .+.++|++++||++
T Consensus        39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~---~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~  112 (389)
T 1o4s_A           39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEV---KYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQ  112 (389)
T ss_dssp             TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCC---CCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHH
T ss_pred             cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCC---CCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHH
Confidence            5788999988876  4564 79999999998876321   2221 23345555555544    3  24578999999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      |++.+++.+.  .+++.|++.+++|++....+...             |...+.+|......|..|    .++++++++ 
T Consensus       113 al~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~-  172 (389)
T 1o4s_A          113 ALFNAFMALL--DPGDEVIVFSPVWVSYIPQIILA-------------GGTVNVVETFMSKNFQPS----LEEVEGLLV-  172 (389)
T ss_dssp             HHHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHHTCC-
T ss_pred             HHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEEecCCccCCCCC----HHHHHHhcc-
Confidence            9999999763  35688999999999876554322             222222221111123223    567777764 


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc----cCCCcceeeeccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMAKG  325 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~----~~~~pDivt~sK~  325 (480)
                         +++++|+++++++++|.+ .+++++++|.++|++||+++|+||+|+++.+.| .......    .+....+.++||.
T Consensus       173 ---~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~  247 (389)
T 1o4s_A          173 ---GKTKAVLINSPNNPTGVV-YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKS  247 (389)
T ss_dssp             ---TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTT
T ss_pred             ---cCceEEEEcCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhh
Confidence               267888888888888876 477899999999999999999999999987766 3322222    2333335589999


Q ss_pred             cc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       326 ~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                      ++ +|+|+||+++++++++.+.......+++.+++++.++.++|+.. .+++.++++++.+++.+.|+++  .+...  .
T Consensus       248 ~~~~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~  322 (389)
T 1o4s_A          248 HSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--E  322 (389)
T ss_dssp             TTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--C
T ss_pred             cCCcccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--c
Confidence            98 79999999999999888876555567888999999888887642 3566777888888888888775  33322  1


Q ss_pred             eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ...|+++++.+. .         ....+.+.|+ ++||++.++..+  .+++||+++  .+++++++++++|.+++++
T Consensus       323 ~~~~~~~~~~~~-~---------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~~  388 (389)
T 1o4s_A          323 PEGAFYLFFKVR-G---------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLNS  388 (389)
T ss_dssp             CSBSSEEEEECS-S---------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHTC
T ss_pred             CCcceEEEEeCC-C---------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHhc
Confidence            223667777763 0         1356788887 889999987543  368999977  4999999999999998864

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=5.4e-32  Score=278.00  Aligned_cols=357  Identities=10%  Similarity=0.038  Sum_probs=249.7

Q ss_pred             CeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCCh-HHHHHHHHHHHhCC-----
Q 011669           82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP-----  155 (480)
Q Consensus        82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~l~e~L~~~~~-----  155 (480)
                      ++....+....+++.+|+.+|||.+|...  + ..+|+|.+++.+++....  ...|... ...++++++++++.     
T Consensus        27 ~~~~~~~~~~~~~~~~g~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~g~  101 (437)
T 3g0t_A           27 SIRDLVALVTNLEKATGTKFCRMEMGVPG--L-PAPQIGIETEIQKLREGV--ASIYPNLDGLPELKQEASRFAKLFVNI  101 (437)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCEECCCCSCC--S-CCCHHHHHHHHHHHHHTG--GGSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEeccCcCCC--C-CCCHHHHHHHHHHHhCCc--CcCCCCCCChHHHHHHHHHHHHHhhCC
Confidence            33334445566778889999999999865  3 378999999999987532  0122222 23455555555543     


Q ss_pred             -CCCCEEEEeCCHHHHHHHHHHHHHhhcCCc--eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          156 -GNLKVVFFTNSGTEANELAIMMARLYTGCN--DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       156 -~~~~~v~f~~sGseA~~~Alk~ar~~~~~~--~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                       .+.++|+||+||++|++.+++.+....+++  +|++.+++|+++...+.....           .+..++..   ...|
T Consensus       102 ~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~~~  167 (437)
T 3g0t_A          102 DIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQ-----------KFESFDLF---EYRG  167 (437)
T ss_dssp             CCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTC-----------CCEEEEGG---GGCT
T ss_pred             CCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCC-----------EEEEEeec---CCCC
Confidence             346789999999999999999875213567  899999999987766544322           11222211   0111


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC-c----
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-F----  307 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~-~----  307 (480)
                      .    ...++++++++.   .++++|++...+|++|.+. +.+.+++|.++|++||+++|+||+|++|.+.+.. .    
T Consensus       168 ~----~d~~~l~~~l~~---~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~  239 (437)
T 3g0t_A          168 E----KLREKLESYLQT---GQFCSIIYSNPNNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEP  239 (437)
T ss_dssp             T----HHHHHHHHHHTT---TCCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSS
T ss_pred             c----cCHHHHHHHHhc---CCceEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCccccc
Confidence            1    126788888842   2556665544478888764 7778999999999999999999999987655411 1    


Q ss_pred             ---ccccc-cCCCcceeeeccccc-cCccccccccCHHHHH-h-----------------hcCCCccccCCCcHHHHHHH
Q 011669          308 ---WGFEA-HGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAE-V-----------------LTRRNYFNTFGGNPVCTAAG  364 (480)
Q Consensus       308 ---~~~~~-~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~-~-----------------l~~~~~~~t~~~~~~~~aaa  364 (480)
                         ..+.. .+....+.++||.++ +|+|+||+++++++++ .                 +.......+++.|+++++++
T Consensus       240 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  319 (437)
T 3g0t_A          240 LYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGM  319 (437)
T ss_dssp             CCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHH
T ss_pred             chhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHH
Confidence               12221 333444668999999 8999999999999998 7                 66555556888999999999


Q ss_pred             HHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHhHHhcCceee------Ee-ccceeEEEEEecCCCcCCCCHHHHHHH
Q 011669          365 HAVLKVIQ-----KDKLQNNAHVVGSYLKERLTALKDKYGIIGD------VR-GRGFLLGVEFVTDRQLKTPAKAETLYI  432 (480)
Q Consensus       365 ~a~L~~i~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~  432 (480)
                      .++|+...     -++..++++++.+++++.|+++    ++...      .+ ..|.++++.+..         .....+
T Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l  386 (437)
T 3g0t_A          320 AAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYKG---------MDSSKL  386 (437)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEETT---------CCHHHH
T ss_pred             HHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecCC---------CCHHHH
Confidence            99998754     2455666677777777776665    22211      24 567888888741         114678


Q ss_pred             HHHHHHcCceeeccCcCC----CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          433 MDKMKEMGVLVGKGGFYG----NVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       433 ~~~l~~~Gv~v~~~~~~~----~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+.|.++||.+.++..++    +++||+++.. +++++++++++|++++++
T Consensus       387 ~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          387 IEKFVRYGMCAITLKTTGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             HHHHHHTTEECEESTTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCeEEeeccccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence            889999999999875432    6799998844 999999999999998764

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.98  E-value=2.3e-31  Score=268.92  Aligned_cols=335  Identities=13%  Similarity=0.100  Sum_probs=226.9

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHh----CC--CCCC-EEEEeCCHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASK----MP--GNLK-VVFFTNSGTEAN  171 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~----~~--~~~~-~v~f~~sGseA~  171 (480)
                      .+|||..|..  .+| .+|.|.+++.+++....+   .|.. ....+++++++++    ++  .+.+ +|++++||++|+
T Consensus        31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~  104 (386)
T 1u08_A           31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGAN---QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEAL  104 (386)
T ss_dssp             TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHH
T ss_pred             CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhcc---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHH
Confidence            4788888865  356 689999999999876211   2221 1234455555544    33  3456 899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      +.+++.+.  .++++|++.+++||+........             |...+.+|.... .|..|    .+++++.++   
T Consensus       105 ~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~l~---  161 (386)
T 1u08_A          105 YAAITALV--RNGDEVICFDPSYDSYAPAIALS-------------GGIVKRMALQPP-HFRVD----WQEFAALLS---  161 (386)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECCTT-TCCCC----HHHHHHHCC---
T ss_pred             HHHHHHhC--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEeecCcc-cCcCC----HHHHHHhhc---
Confidence            99999763  35689999999999876543222             222222221110 23334    677877774   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC---ccccc-ccCCCcceeeeccccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFE-AHGVVPDIVTMAKGIG  327 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~---~~~~~-~~~~~pDivt~sK~~g  327 (480)
                       +++++|+++++++++|.+. +.+++++|.++|++||+++|+||+|++|.++|..   +..++ ..+..+.+.++||.++
T Consensus       162 -~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~  239 (386)
T 1u08_A          162 -ERTRLVILNTPHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH  239 (386)
T ss_dssp             -TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT
T ss_pred             -ccCEEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC
Confidence             3678888888888888774 7789999999999999999999999998776621   22222 2455666778999999


Q ss_pred             -cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec
Q 011669          328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG  406 (480)
Q Consensus       328 -~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  406 (480)
                       +|+|+||+++++++++.+.......+++.++++++++.++|+..  +++.+++++.....++.|.+..+++++......
T Consensus       240 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  317 (386)
T 1u08_A          240 MTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCE  317 (386)
T ss_dssp             CGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCC
T ss_pred             CcccceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC
Confidence             79999999999999888876555567888999999998888754  233333333333334444333333332222223


Q ss_pred             cceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       407 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      .|+++++++.....      .....+.+.|. ++||++.++..+      .+++||+++  .++++|++++++|++
T Consensus       318 ~g~~~~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          318 GTYFLLVDYSAVST------LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ  385 (386)
T ss_dssp             BSSEEEEECTTTCC------SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred             ceEEEEEecCCCCC------CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence            36788888732100      01356777676 689999887433      468999976  589999999999864

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.98  E-value=4.5e-31  Score=263.26  Aligned_cols=329  Identities=10%  Similarity=0.070  Sum_probs=221.8

Q ss_pred             EeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeC
Q 011669           86 VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTN  165 (480)
Q Consensus        86 ~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~  165 (480)
                      .+++|.+++|.+|+++|||.+|....  + .+|+|.+++.+++...    ..|+++...+++++|+++++.+.++|++++
T Consensus         2 ~~~~g~~~~~~~g~~~id~~~~~~~~--~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~   74 (350)
T 3fkd_A            2 IFGHGDEGITPLSSEIVNFSTTVWTD--G-DKDHLEKHLVENLNCI----RHYPEPDAGTLRQMLAKRNSVDNNAILVTN   74 (350)
T ss_dssp             --------------CCEECSCCSCCC--S-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred             cccccchHhhhccccEEEccCCCCCC--C-CCHHHHHHHHHhHhHH----hcCCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence            56799999999999999999887544  4 7899999998877432    234444447899999999987778999999


Q ss_pred             CHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCC-CcCCCCCCChHHHHHHHH
Q 011669          166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD-PYRGVFGADGEMYAKDVQ  244 (480)
Q Consensus       166 sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~~~~~~~~d~~~~~~~le  244 (480)
                      ||++|++.+++.+.    ++.|++.+++|++........             |...+.+|. .....+.           
T Consensus        75 g~~~al~~~~~~l~----gd~Vi~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~-----------  126 (350)
T 3fkd_A           75 GPTAAFYQIAQAFR----GSRSLIAIPSFAEYEDACRMY-------------EHEVCFYPSNEDIGEAD-----------  126 (350)
T ss_dssp             HHHHHHHHHHHHTT----TCEEEEEESCCHHHHHHHHHT-------------TCEEEEEETTSCGGGSC-----------
T ss_pred             CHHHHHHHHHHHHC----CCEEEEeCCCcHHHHHHHHHc-------------CCeEEEEecCCccccCc-----------
Confidence            99999999998654    689999999999876544332             222222221 1001110           


Q ss_pred             HHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC-CEEEEcccccCccccCCCc-ccccccCCCcceeee
Q 011669          245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG-GLCIADEVQAGFARTGSHF-WGFEAHGVVPDIVTM  322 (480)
Q Consensus       245 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g-illI~DEv~tgfgr~G~~~-~~~~~~~~~pDivt~  322 (480)
                             ..++++|+++..+|++|.+.+    ++++.++++.++ .++|+||+|.+|++.+... ...+..+....+.+|
T Consensus       127 -------~~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~  195 (350)
T 3fkd_A          127 -------FSNMDFCWLCNPNNPDGRLLQ----RTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSF  195 (350)
T ss_dssp             -------CTTCSEEEEESSCTTTCCCCC----HHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEES
T ss_pred             -------cCCCCEEEEeCCCCCcCCCCC----HHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecC
Confidence                   125677777777888898865    455555555544 5999999999998776211 112223334455689


Q ss_pred             ccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          323 AKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       323 sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--~~~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      ||.++ +|+|+||+++++++++.+....  .+++.|+++++++.++|+...  .+...+. .++.+++.+.|+    +++
T Consensus       196 sK~~~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~L~----~~~  268 (350)
T 3fkd_A          196 SHAYGIPGLRIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRKW-QRNTVDFITALN----RLD  268 (350)
T ss_dssp             HHHHSCGGGCCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHHH-HHHHHHHHHHHH----HST
T ss_pred             chhccCcchheEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHH-HHHHHHHHHHHh----cCC
Confidence            99999 8999999999999999887654  467889999999999987433  1122222 244445555444    345


Q ss_pred             ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 011669          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMD  474 (480)
Q Consensus       400 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~  474 (480)
                      .+...++.|.++++.+...         ....+.+.|++ +||++.++..+    .+++||+++   +++++++++++|+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~  336 (350)
T 3fkd_A          269 GVEVHPSGTTFFLLRLKKG---------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALE  336 (350)
T ss_dssp             TEEECCCSSSEEEEEESSS---------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHH
T ss_pred             CcEECCCCCcEEEEECCCC---------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHH
Confidence            4555667788888877431         24678888888 99999987543    578999944   8899999999999


Q ss_pred             HHHhh
Q 011669          475 YSLSK  479 (480)
Q Consensus       475 ~~l~~  479 (480)
                      +++++
T Consensus       337 ~~~~~  341 (350)
T 3fkd_A          337 TFLEK  341 (350)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            88764

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.98  E-value=4.1e-30  Score=258.35  Aligned_cols=324  Identities=16%  Similarity=0.122  Sum_probs=234.0

Q ss_pred             EeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHh------CCCCCCEEEEeCCHHHHHHHHH
Q 011669          102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASK------MPGNLKVVFFTNSGTEANELAI  175 (480)
Q Consensus       102 lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~------~~~~~~~v~f~~sGseA~~~Al  175 (480)
                      |||.+|..  .+| .+|+|.+++.+++.+.......|......+++++++++      ++.+.++|++++||++|++.++
T Consensus        33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~  109 (369)
T 3cq5_A           33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL  109 (369)
T ss_dssp             EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred             eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence            89988876  455 78999999999987642222334433335777777777      5556678999999999999999


Q ss_pred             HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (480)
                      +.+..  +++.|++.+++||+..........           .+..++..    ..|..|    .+++++.++..   ++
T Consensus       110 ~~l~~--~gd~Vl~~~~~y~~~~~~~~~~g~-----------~~~~v~~~----~~~~~d----~~~l~~~i~~~---~~  165 (369)
T 3cq5_A          110 QAFGG--PGRTALGFQPSYSMHPILAKGTHT-----------EFIAVSRG----ADFRID----MDVALEEIRAK---QP  165 (369)
T ss_dssp             HHHCS--TTCEEEEEESSCTHHHHHHHHTTC-----------EEEEEECC----TTSSCC----HHHHHHHHHHH---CC
T ss_pred             HHhcC--CCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCC----cCCCCC----HHHHHHHhhcc---CC
Confidence            87643  568999999999987764433211           11222211    122234    57788777631   56


Q ss_pred             EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccC-CCcceeeeccccc-cCccc
Q 011669          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHG-VVPDIVTMAKGIG-NGIPL  332 (480)
Q Consensus       256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~-~~pDivt~sK~~g-~G~pi  332 (480)
                      ++|+++++++++|.+.+    ++++.++|+.+++++|+||+|++|++.. ..+.. +.++ ..+++.++||.++ +|+|+
T Consensus       166 ~~v~~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  240 (369)
T 3cq5_A          166 DIVFVTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSP-SATTLLEKYPTKLVVSRTMSKAFDFAGGRL  240 (369)
T ss_dssp             SEEEEESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSC-CGGGGTTTCTTTEEEEEESSSTTSCGGGCC
T ss_pred             CEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCc-chHHHHhhCCCCEEEEEechHhcCCcccce
Confidence            78888889999998876    7888899999999999999999887543 33322 3344 4566779999998 79999


Q ss_pred             cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeE
Q 011669          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (480)
Q Consensus       333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  411 (480)
                      ||+++++++++.+....  .+|+.|+++++++.++|+..+. ++..++.++..+++.+.|++.    + +...++.|.++
T Consensus       241 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~  313 (369)
T 3cq5_A          241 GYFVANPAFIDAVMLVR--LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----G-YAVVPSESNFV  313 (369)
T ss_dssp             EEEEECTHHHHHHHTTS--CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----T-CEEECCSSSEE
T ss_pred             EEEEeCHHHHHHHHHcC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----C-CEECCCCCeEE
Confidence            99999999988887543  4567899999999999874211 234555666666666666553    3 23346678888


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ++++..          ....+.+.|.++||++.+++ ..+++||+++   +++|+++++++|+++++
T Consensus       314 ~~~~~~----------~~~~l~~~l~~~gi~v~~~~-~~~~iRis~~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          314 FFGDFS----------DQHAAWQAFLDRGVLIRDVG-IAGHLRTTIG---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             EEECCS----------SHHHHHHHHHHTTEECBCCS-CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred             EEECCC----------CHHHHHHHHHHCCEEEEECC-CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence            887631          13567888899999998873 3578999976   89999999999999875

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.98  E-value=4.4e-31  Score=268.80  Aligned_cols=348  Identities=11%  Similarity=0.046  Sum_probs=230.4

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-----ChHHHHHHHHHHHhCC--CCC-CEEEEeCCHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-----NHAIADFAEALASKMP--GNL-KVVFFTNSGTEA  170 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-----~~~~~~l~e~L~~~~~--~~~-~~v~f~~sGseA  170 (480)
                      ..+|||..|....  + .+|+|.+|+.+++.+..  ...|.     .+....+++.+.+.++  .+. ++|++++||++|
T Consensus        23 ~~~i~l~~~~~~~--~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a   97 (410)
T 3e2y_A           23 PSVVNLGQGFPDI--S-PPSYVKEELSKAAFIDN--MNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGS   97 (410)
T ss_dssp             TTSEECSSCCCCS--C-CCHHHHHHHHHHHTCGG--GGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred             CCeEEecCCCCCC--C-CCHHHHHHHHHHHhCcc--ccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence            4578888887543  2 67999999999987531  11222     2333444444444332  334 689999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC-------cCCCCCCChHHHHHHH
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-------YRGVFGADGEMYAKDV  243 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------~~~~~~~d~~~~~~~l  243 (480)
                      ++.+++.+.  .+++.|++..++|++.......... .          +..++....       ....|..|    .+++
T Consensus        98 ~~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~-~----------~~~~~~~~~~~~g~~~~~~~~~~d----~~~l  160 (410)
T 3e2y_A           98 LFNSIQGLV--DPGDEVIIMVPFYDCYEPMVRMAGA-V----------PVFIPLRSKPTDGMKWTSSDWTFD----PREL  160 (410)
T ss_dssp             HHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-E----------EEEEECEECCCCSSCCBGGGEECC----HHHH
T ss_pred             HHHHHHHhc--CCCCEEEEeCCCchhhHHHHHHcCC-E----------EEEEeccccccccccccccCCcCC----HHHH
Confidence            999999764  3678899999999987655433221 1          111111100       00111122    5667


Q ss_pred             HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc----CCCcce
Q 011669          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDI  319 (480)
Q Consensus       244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~----~~~pDi  319 (480)
                      ++.++    .++++|++++++|++|.+. +++.+++|.++|++||+++|+||+|++|+++|.....+...    +...++
T Consensus       161 ~~~~~----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~  235 (410)
T 3e2y_A          161 ESKFS----SKTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITI  235 (410)
T ss_dssp             HTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEE
T ss_pred             HhhcC----CCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEE
Confidence            66663    3788899999899999875 77789999999999999999999999998877323233222    233455


Q ss_pred             eeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHH
Q 011669          320 VTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-----IQKDKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       320 vt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~-----i~~~~~~~~~~~~~~~l~~~L~~  393 (480)
                      .++||.+| +|+|+||+++++++++.+.......+++.++++++++.++|+.     ...+++.++..+..+..++.|.+
T Consensus       236 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  315 (410)
T 3e2y_A          236 GSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVR  315 (410)
T ss_dssp             EEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             ecchhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            68999999 8999999999999998887655667889999999999999874     11133334444444444444444


Q ss_pred             hHHhcCceeeEeccceeEEEEEecCCCcCCC---CHHHHHHHHHH-HHHcCceeeccCcC---------CCEEEEeCCCC
Q 011669          394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP---AKAETLYIMDK-MKEMGVLVGKGGFY---------GNVFRITPPLC  460 (480)
Q Consensus       394 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~---~~~~~~~~~~~-l~~~Gv~v~~~~~~---------~~~iRi~p~~~  460 (480)
                      ...++++....+..|+++++++.........   .......+++. +.++||++.+|..+         .+++||+  +.
T Consensus       316 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~  393 (410)
T 3e2y_A          316 LLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--FI  393 (410)
T ss_dssp             HHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--CC
T ss_pred             HHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--Ec
Confidence            4444444444556688888887542210000   00112345554 45789999987654         3789999  56


Q ss_pred             CCHHHHHHHHHHHHH
Q 011669          461 FTKEDADYLVDVMDY  475 (480)
Q Consensus       461 ~t~~~id~~l~~l~~  475 (480)
                      .+++++++++++|++
T Consensus       394 ~~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          394 KKDSTLDAAEEIFRA  408 (410)
T ss_dssp             CCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHh
Confidence            699999999999975

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.98  E-value=1.9e-31  Score=272.10  Aligned_cols=340  Identities=14%  Similarity=0.088  Sum_probs=230.1

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccCChHHHHHHHHHHHhCC--CCCC-EEEEeCCHHHHHHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMP--GNLK-VVFFTNSGTEANELAI  175 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~l~e~L~~~~~--~~~~-~v~f~~sGseA~~~Al  175 (480)
                      +|||..|..  .+| .+|.|.+++.+++++..  +....+..+...++++.+.+.++  .+.+ +|++++||++|++.++
T Consensus        27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~  103 (411)
T 2o0r_A           27 AVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV  103 (411)
T ss_dssp             CEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred             eeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence            689988865  355 68999999999997621  11111122333444444444334  3455 8999999999999999


Q ss_pred             HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC-CCCCCChHHHHHHHHHHHHccCCCc
Q 011669          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR-GVFGADGEMYAKDVQDLIDFGTSGH  254 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~-~~~~~d~~~~~~~le~~i~~~~~~~  254 (480)
                      +.+..  +++.|++.+++||+........ +            ...+.+|.... ..|..|    .++|++.++    .+
T Consensus       104 ~~~~~--~gd~Vl~~~~~y~~~~~~~~~~-g------------~~~~~v~~~~~~~~~~~d----~~~l~~~l~----~~  160 (411)
T 2o0r_A          104 LGLVE--PGSEVLLIEPFYDSYSPVVAMA-G------------AHRVTVPLVPDGRGFALD----ADALRRAVT----PR  160 (411)
T ss_dssp             HHHCC--TTCEEEEEESCCTTHHHHHHHT-T------------CEEEEEECEEETTEEECC----HHHHHHHCC----TT
T ss_pred             HHhcC--CCCEEEEeCCCcHhHHHHHHHc-C------------CEEEEeeccccccCCCCC----HHHHHHhhc----cC
Confidence            97743  5689999999999876543221 1            11121111100 012123    577887774    36


Q ss_pred             eEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc----cCCCcceeeeccccc-cC
Q 011669          255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMAKGIG-NG  329 (480)
Q Consensus       255 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~----~~~~pDivt~sK~~g-~G  329 (480)
                      +++|+++++++++|.+ .+.+++++|.++|++||+++|+||+|++++++|.....+..    .+..+.+.++||.++ +|
T Consensus       161 ~~~v~l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  239 (411)
T 2o0r_A          161 TRALIINSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG  239 (411)
T ss_dssp             EEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT
T ss_pred             ceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc
Confidence            7888888888889976 47789999999999999999999999998877632222222    233455668999999 79


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR  407 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  407 (480)
                      +|+||+++++++++.+.......+++.++++++++.++|+...+  ++..++++++.+++.+.|+++    ++.......
T Consensus       240 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~  315 (411)
T 2o0r_A          240 WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYG  315 (411)
T ss_dssp             TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCB
T ss_pred             ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCe
Confidence            99999999999988877655556788888899999888875421  234455556666666666554    322222334


Q ss_pred             ceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC---------------CCEEEEeCCCCCCHHHHHHHHH
Q 011669          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY---------------GNVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~---------------~~~iRi~p~~~~t~~~id~~l~  471 (480)
                      |+++++++.....      .....+.+.|+ ++||++.++..+               .+++||+++  .++++++++++
T Consensus       316 g~~~~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~  387 (411)
T 2o0r_A          316 TYFLCADPRPLGY------DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIR  387 (411)
T ss_dssp             SSEEEEECGGGTC------CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHH
T ss_pred             eEEEEEecCCCCC------CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHH
Confidence            6788888743100      01345777665 679999886432               368999965  58999999999


Q ss_pred             HHHHHHhh
Q 011669          472 VMDYSLSK  479 (480)
Q Consensus       472 ~l~~~l~~  479 (480)
                      +|++++++
T Consensus       388 ~l~~~~~~  395 (411)
T 2o0r_A          388 RLSVLAER  395 (411)
T ss_dssp             HHGGGGC-
T ss_pred             HHHHHHhc
Confidence            99887653

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.98  E-value=2.8e-31  Score=273.97  Aligned_cols=347  Identities=14%  Similarity=0.090  Sum_probs=236.3

Q ss_pred             eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccC-ChHHHHHHHHHHHhC----CCCCCEEEEeCCH
Q 011669           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL-NHAIADFAEALASKM----PGNLKVVFFTNSG  167 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~-~~~~~~l~e~L~~~~----~~~~~~v~f~~sG  167 (480)
                      +.+|+++|||..|....   ..+|.|.+|+.+++.+..  +....|. .....+|+++|++++    +.+.++|+|++|+
T Consensus        65 ~~~~~~~i~l~~g~~~~---~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~  141 (449)
T 3qgu_A           65 KNPDAKIISLGIGDTTE---PLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGS  141 (449)
T ss_dssp             HCTTCCCEECSSCCCCC---CCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred             hCCCCCEEEeeCCCCCC---CCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCH
Confidence            34689999999986543   368999999999998653  2222343 345678888888887    5567789999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      +++++.+ ....  .+++.|++.+++||+.............++. .....+..++...  ...+..|       ++   
T Consensus       142 ~~al~~~-~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~-~~~~~~~~~~~~~--~~~~~~~-------~~---  205 (449)
T 3qgu_A          142 KCDIARI-QMMF--GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG-TGFDGIEYMVCNP--DNHFFPD-------LS---  205 (449)
T ss_dssp             HHHHHHH-HHHH--CSSSCEEEEESCCTHHHHHHHHHTCSCCBCS-SSBTTEEEEECCG--GGTTCCC-------GG---
T ss_pred             HHHHHHH-HHHh--CCCCEEEEcCCCChhHHHHHHHcCCcccccc-cccceeEEEeccc--ccCCcCC-------hh---
Confidence            9999988 3322  3678999999999998876665543211110 0001133333211  1112111       11   


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc----cCCCcceeeec
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMA  323 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~----~~~~pDivt~s  323 (480)
                       ..  .++++|+++..+|++|.+. +.+.+++|+++|++||+++|+||+|++|++.|.....+..    .++.+++.+||
T Consensus       206 -~~--~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  281 (449)
T 3qgu_A          206 -KA--KRTDIIFFCSPNNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFS  281 (449)
T ss_dssp             -GC--CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECS
T ss_pred             -Hc--CCCCEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecch
Confidence             11  3567777777788888764 7788999999999999999999999999877632222222    23445577899


Q ss_pred             cccc-cCccccccccCHHHHH--------hhcCCCccccCCCcHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHH
Q 011669          324 KGIG-NGIPLGAVVTTPEIAE--------VLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---KDKLQNNAHVVGSYLKERL  391 (480)
Q Consensus       324 K~~g-~G~pig~v~~~~~~~~--------~l~~~~~~~t~~~~~~~~aaa~a~L~~i~---~~~~~~~~~~~~~~l~~~L  391 (480)
                      |.+| +|+|+||+++++++++        .+.......+++.++++++++.++|+...   .++..++++++.+++++.|
T Consensus       282 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  361 (449)
T 3qgu_A          282 KYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTF  361 (449)
T ss_dssp             GGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 8999999999988765        22222233555789999999998886421   1345556666666666666


Q ss_pred             HHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC----CCEEEEeCCCCCCHHHH
Q 011669          392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY----GNVFRITPPLCFTKEDA  466 (480)
Q Consensus       392 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~~~i  466 (480)
                      +++    ++.......|+++|+.+. .        ....++++.|+++ ||++.++..+    .+++||+  +..+++++
T Consensus       362 ~~~----g~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i  426 (449)
T 3qgu_A          362 TEM----GFSVYGGDDAPYIWVGFP-G--------KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENI  426 (449)
T ss_dssp             HHT----TCCEEESSSSSEEEEECT-T--------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHH
T ss_pred             HHC----CCeeeCCCCeeEEEEECC-C--------CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHH
Confidence            654    322222234778888873 1        1145677777765 9999987543    4799999  66799999


Q ss_pred             HHHHHHHHHHHhh
Q 011669          467 DYLVDVMDYSLSK  479 (480)
Q Consensus       467 d~~l~~l~~~l~~  479 (480)
                      ++++++|++++++
T Consensus       427 ~~~l~~l~~~~~~  439 (449)
T 3qgu_A          427 LEAVRRFKEAYGK  439 (449)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998864

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.97  E-value=4e-31  Score=271.10  Aligned_cols=346  Identities=13%  Similarity=0.089  Sum_probs=229.7

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHH---------hccccccccCChH-HHHHHHHHHHhCC--------CCCCEE
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIK---------RIQHSTVLYLNHA-IADFAEALASKMP--------GNLKVV  161 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~---------~~~~~~~~~~~~~-~~~l~e~L~~~~~--------~~~~~v  161 (480)
                      .++||.++..  .+|  +|.+.+++.++..         ... ....|..+. ..++++.++++++        .+.++|
T Consensus        37 ~~i~l~~~~~--~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i  111 (428)
T 1iay_A           37 GVIQMGLAEN--QLC--LDLIEDWIKRNPKGSICSEGIKSFK-AIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERV  111 (428)
T ss_dssp             SBEECSSCCC--CSS--HHHHHHHHHHCTTSSTTC----CHH-HHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSC
T ss_pred             ceeeeccccc--hhh--HHHHHHHHHhccccccccccccccH-hhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhE
Confidence            4788876653  344  5788888875421         010 012233322 4556666666543        456789


Q ss_pred             EEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHH
Q 011669          162 FFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK  241 (480)
Q Consensus       162 ~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~  241 (480)
                      ++++|+++|++.+++.+..  +++.|++.+++||++........            |+..+.+|......|..|    .+
T Consensus       112 ~~~~G~~~ai~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~~------------g~~~~~v~~~~~~~~~~d----~~  173 (428)
T 1iay_A          112 VMAGGATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRT------------GVQLIPIHCESSNNFKIT----SK  173 (428)
T ss_dssp             EEEEHHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTT------------CCEEEEECCCTTTTTCCC----HH
T ss_pred             EEccChHHHHHHHHHHhCC--CCCeEEEccCCCcchHHHHHHhc------------CCEEEEeecCCccCCcCC----HH
Confidence            9999999999999997753  56899999999998765332222            222333332111223334    56


Q ss_pred             HHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc------
Q 011669          242 DVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH------  313 (480)
Q Consensus       242 ~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~------  313 (480)
                      ++++.++..  ...++++|++...++++|.+ .+++++++|.++|++||+++|+||+|++|++.|..+..+...      
T Consensus       174 ~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~  252 (428)
T 1iay_A          174 AVKEAYENAQKSNIKVKGLILTNPSNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM  252 (428)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG
T ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccc
Confidence            777777531  12367777777677888876 488999999999999999999999999977665222121111      


Q ss_pred             -CCCcc----eeeeccccc-cCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh---h--hHHHHHHH
Q 011669          314 -GVVPD----IVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---K--DKLQNNAH  381 (480)
Q Consensus       314 -~~~pD----ivt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~---~--~~~~~~~~  381 (480)
                       ++.+|    +.|+||.+| +|+|+||+++ ++++++.+...  ..+++.|+++++++.++|+..+   +  ++..++++
T Consensus       253 ~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  330 (428)
T 1iay_A          253 TYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM--SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLG  330 (428)
T ss_dssp             TTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH--HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHH--HhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence             22356    558999999 8999999998 68888776542  2346788999999888886422   1  23445555


Q ss_pred             HHHHHHHHHHHHhHHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC----CCEEEE
Q 011669          382 VVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY----GNVFRI  455 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi  455 (480)
                      +..+++.+.|+++    ++ ..+++ .|+++++++....  ..+.......+.+.|+++ ||++.++..+    .+++||
T Consensus       331 ~~~~~l~~~L~~~----g~-~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRi  403 (428)
T 1iay_A          331 KRHKHFTNGLEVV----GI-KCLKNNAGLFCWMDLRPLL--RESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRV  403 (428)
T ss_dssp             HHHHHHHHHHHHT----TC-CBCCCSSSSEEEEECGGGC--SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEE
T ss_pred             HHHHHHHHHHHhc----CC-cccCCCeeEEEEEechhhc--CCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEE
Confidence            6666666666554    22 22344 5788888874321  011222345688888876 9999987544    368999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          456 TPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++ .++++++++++++|++++++
T Consensus       404 s~~-~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          404 CFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             ECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             EEe-cCCHHHHHHHHHHHHHHHhc
Confidence            987 58999999999999998865

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.97  E-value=2.8e-31  Score=270.30  Aligned_cols=343  Identities=14%  Similarity=0.065  Sum_probs=233.7

Q ss_pred             eCCCCEEEeccCCcccc-cCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhC------CCCCCEEEEeCC
Q 011669           95 DENGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM------PGNLKVVFFTNS  166 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~------~~~~~~v~f~~s  166 (480)
                      ..+|+.+|||..|.++. .++ .+|++.+++.+++.+...   .|.. ....++++++++++      +.+.++|++++|
T Consensus        34 ~~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~---~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g  109 (406)
T 1xi9_A           34 EKKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHN---YYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAA  109 (406)
T ss_dssp             HHTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCC---SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred             HHcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCC---CCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCC
Confidence            34688999999887743 455 579999999998876421   1222 12344445554443      445678999999


Q ss_pred             HHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       167 GseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      |++|++.+++.+.  .+++.|++.+++||++...+...             |...+.+|......|..|    .++|++.
T Consensus       110 ~~~al~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~  170 (406)
T 1xi9_A          110 VTEALQLIFGALL--DPGDEILVPGPSYPPYTGLVKFY-------------GGKPVEYRTIEEEDWQPD----IDDIRKK  170 (406)
T ss_dssp             HHHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHT-------------TCEEEEEEEEGGGTSEEC----HHHHHHH
T ss_pred             hHHHHHHHHHHhC--CCCCEEEEcCCCCccHHHHHHHc-------------CCEEEEeecCCCcCCcCC----HHHHHHh
Confidence            9999999999773  35789999999999876554322             111111111100112123    5778877


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCc-cee--eec
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP-DIV--TMA  323 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~p-Div--t~s  323 (480)
                      ++    +++++|+++++++++|.+. +++++++|.++|++||+++|+||+|++|.+.+ ....+..++... +++  ++|
T Consensus       171 l~----~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~i~~~s~s  244 (406)
T 1xi9_A          171 IT----DRTKAIAVINPNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLTKDVPVIVMNGLS  244 (406)
T ss_dssp             CC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHCSSSCEEEEEEST
T ss_pred             hC----cCceEEEEECCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcCCCceEEEEeccc
Confidence            75    2678888888888899764 77899999999999999999999999987744 333333332111 343  689


Q ss_pred             cccc-cCccccccc--cCH----HHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHh
Q 011669          324 KGIG-NGIPLGAVV--TTP----EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       324 K~~g-~G~pig~v~--~~~----~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l  394 (480)
                      |.++ +|+|+||++  +++    ++++.+....... ++.|+++++++.++|+...+  +++.++++++.+++.+.|++ 
T Consensus       245 K~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-  322 (406)
T 1xi9_A          245 KVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-  322 (406)
T ss_dssp             TTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             cccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            9998 799999999  898    8888776543333 77889999999999863322  33445555556666555554 


Q ss_pred             HHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC----CCEEEEeCCCCCCHHHHHH
Q 011669          395 KDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY----GNVFRITPPLCFTKEDADY  468 (480)
Q Consensus       395 ~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~  468 (480)
                         ++.+..+.+. |+++++.+....      ......+.+.|+ ++||++.++..+    .+++||+++  ++++++++
T Consensus       323 ---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~  391 (406)
T 1xi9_A          323 ---IPGISTTKPQGAFYIFPKIEVGP------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEE  391 (406)
T ss_dssp             ---STTEECCCCCBSSEECCEECSCS------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHH
T ss_pred             ---CCCCeeecCCeeEEEEEecCccC------CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHH
Confidence               3333333333 556666763210      011456777776 889999887543    468999976  89999999


Q ss_pred             HHHHHHHHHhh
Q 011669          469 LVDVMDYSLSK  479 (480)
Q Consensus       469 ~l~~l~~~l~~  479 (480)
                      ++++|++++++
T Consensus       392 ~~~~l~~~l~~  402 (406)
T 1xi9_A          392 AMDRFEKFMKE  402 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.97  E-value=1.1e-30  Score=261.60  Aligned_cols=327  Identities=15%  Similarity=0.106  Sum_probs=231.5

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Al  175 (480)
                      .+|+.+|||.++....   ..+|+|.+|+.+++.+..+....|+++...+++++|+++++.+.++|+|++||++|++.++
T Consensus        23 ~~~~~~i~l~~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~   99 (360)
T 3hdo_A           23 PDIASWIKLNTNENPY---PPSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI   99 (360)
T ss_dssp             SCCTTSEECSSCCCSS---CCCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred             ccccceeeccCCCCCC---CCCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence            5788999999887643   3789999999999887422223445555678999999999766789999999999999999


Q ss_pred             HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (480)
                      +.+..  +++.|++.+++|++..........           .+..++..+    .|.      +   +++++..   ++
T Consensus       100 ~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~------~---~~l~~~~---~~  150 (360)
T 3hdo_A          100 RAFAA--EGEEIGYVHPSYSYYGTLAEVQGA-----------RVRTFGLTG----DFR------I---AGFPERY---EG  150 (360)
T ss_dssp             HHHCC--TTCEEEEESSSCTHHHHHHHHHTC-----------EEEEECBCT----TSS------B---TTCCSSB---CS
T ss_pred             HHHhC--CCCEEEEcCCChHHHHHHHHHCCC-----------EEEEeeCCC----CCC------H---HHHHhhc---CC
Confidence            97643  568999999999987755443321           112222211    111      1   1222211   23


Q ss_pred             EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCccccc
Q 011669          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGA  334 (480)
Q Consensus       256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~  334 (480)
                      ++++++..++++|.+.+    ++++.++|+++|+++|+||+|++|+..+ .....+..+..+.+.++||.++ +|+|+||
T Consensus       151 ~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~  225 (360)
T 3hdo_A          151 KVFFLTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESN-ALELVRRHENVVVTRTLSKSYSLAGMRIGL  225 (360)
T ss_dssp             SEEEEESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCC-CTHHHHHCSSEEEEEESTTTTSCTTSCCEE
T ss_pred             CEEEEeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcc-hhHHhccCCCEEEEecchHhhcCCccceee
Confidence            46777777888898887    8999999999999999999999874332 2212233455556678999998 7999999


Q ss_pred             cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEE
Q 011669          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  413 (480)
                      +++++++++.+....  .+++.|+++++++.++|+..+. ++..++.+++.+++++.|+++    + +...++.|.++++
T Consensus       226 ~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~  298 (360)
T 3hdo_A          226 AIARPEVIAALDKIR--DHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----G-YDVIPSQGNYLFA  298 (360)
T ss_dssp             EECCHHHHHHHHHHS--CSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CEECCCSSSEEEE
T ss_pred             EeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-CEEcCCCccEEEE
Confidence            999999998876543  4578999999999999874110 233444445555555555443    3 3345677888887


Q ss_pred             EEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          414 EFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+...         ....+.+.|.++||++.+++.  ..+++||+++   +++|+|+++++|+++.+
T Consensus       299 ~~~~~---------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          299 TPPDR---------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             ECTTC---------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             ECCCC---------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence            65311         146688889999999988653  2478999954   99999999999998754

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.97  E-value=2e-30  Score=260.84  Aligned_cols=303  Identities=15%  Similarity=0.122  Sum_probs=222.3

Q ss_pred             ChHHHHHHHHHHHhC-CCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC
Q 011669          140 NHAIADFAEALASKM-PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~-~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g  218 (480)
                      .....+|++++++++ +.+.++|++++||++|++.+++.+.  .+++.|++.+++|++........             |
T Consensus        62 ~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-------------g  126 (375)
T 3op7_A           62 IEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--EPGDHVISLYPTYQQLYDIPKSL-------------G  126 (375)
T ss_dssp             TTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--CTTCEEEEEESSCTHHHHHHHHT-------------T
T ss_pred             CCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--CCCCEEEEeCCCchhHHHHHHHc-------------C
Confidence            445678999999987 3466789999999999999999764  36789999999999866543322             2


Q ss_pred             eeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc
Q 011669          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA  298 (480)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t  298 (480)
                      ...+.+|......|..|    .++++++++    +++++|+++++++++|.+. +++++++|.++|++||+++|+||+|+
T Consensus       127 ~~~~~v~~~~~~~~~~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~  197 (375)
T 3op7_A          127 AEVDLWQIEEENGWLPD----LEKLRQLIR----PTTKMICINNANNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYR  197 (375)
T ss_dssp             CEEEEEEEEGGGTTEEC----HHHHHHHCC----TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSC
T ss_pred             CEEEEEeccccCCCCCC----HHHHHHhhc----cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccc
Confidence            22222221111122123    677888775    3678899999999999764 88889999999999999999999999


Q ss_pred             CccccCCCcccccccCCCcceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHH
Q 011669          299 GFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ  377 (480)
Q Consensus       299 gfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~  377 (480)
                      +|++.+ .....+.++..+++.+|||.++ +|+|+||+++++++++.+.......+++.++++++++.++|+..  +.+.
T Consensus       198 ~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~  274 (375)
T 3op7_A          198 SFSELD-VPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY--QEIL  274 (375)
T ss_dssp             CCSSSC-CCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTH--HHHH
T ss_pred             cccccC-CCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhcc--HHHH
Confidence            987764 2323345666788889999999 79999999999999999988777788899999999999888742  3445


Q ss_pred             HHHHHHHHHHHHHHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC--CCEE
Q 011669          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY--GNVF  453 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~i  453 (480)
                      ++.++.....++.+.+..++++.+..+.+. |.+.++.+....        ....+.+.| .++||++.++..+  .+++
T Consensus       275 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~~g~~~~~~~~i  346 (375)
T 3op7_A          275 ERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM--------PMEDFCLQLLQEHGVLLVPGNRFERDGYV  346 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS--------CHHHHHHHHHHHHCEECEEGGGGTCTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC--------CHHHHHHHHHHhCCEEEeChhhhCCCCeE
Confidence            555554455555555555555555544444 455666663211        134566666 5889999987654  4789


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          454 RITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||+  +..+++++++++++|++++++
T Consensus       347 Ri~--~~~~~~~i~~~l~~l~~~l~~  370 (375)
T 3op7_A          347 RLG--FACEQETLIKGLEKLSQFLRR  370 (375)
T ss_dssp             EEC--CCSCHHHHHHHHHHHHHHHGG
T ss_pred             EEE--ecCCHHHHHHHHHHHHHHHHH
Confidence            999  556779999999999999875

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.97  E-value=1e-30  Score=265.15  Aligned_cols=336  Identities=15%  Similarity=0.112  Sum_probs=232.7

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc-cccc-----CChHHHHHHHHHHHhCC--CCCCEEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVLY-----LNHAIADFAEALASKMP--GNLKVVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~~-----~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGse  169 (480)
                      |+.+|||..|.+..   ..+|+|.+++.+++.+.... ...|     ..+...++++.+.+.++  .+.++|+|++||++
T Consensus        34 ~~~~i~l~~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~  110 (398)
T 3ele_A           34 KENVYDFSIGNPSI---PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA  110 (398)
T ss_dssp             GGGCEECCSCCCCS---CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred             CCCeEEeecCCCCC---CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence            56799999885443   47899999999998873111 1112     12344455555554433  45678999999999


Q ss_pred             HHHHHHHHHHhhcCC-ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          170 ANELAIMMARLYTGC-NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       170 A~~~Alk~ar~~~~~-~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      |++.+++.+..  ++ +.|++.+++|+++.......             |...+.+|... ..|.-|    .++++++++
T Consensus       111 al~~~~~~l~~--~g~d~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~l~  170 (398)
T 3ele_A          111 SLSICFRALTS--DAYDEFITIAPYFPEYKVFVNAA-------------GARLVEVPADT-EHFQID----FDALEERIN  170 (398)
T ss_dssp             HHHHHHHHHCC--STTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCT-TTSSCC----HHHHHHTCC
T ss_pred             HHHHHHHHHcC--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecCC-cCCcCC----HHHHHHHhC
Confidence            99999997743  55 89999999999876654332             22233332211 122234    577777764


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH------hCCEEEEcccccCccccCCCc-ccccccCCCcceee
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK------AGGLCIADEVQAGFARTGSHF-WGFEAHGVVPDIVT  321 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~------~gillI~DEv~tgfgr~G~~~-~~~~~~~~~pDivt  321 (480)
                          .++++|++...+|++|.+. +.+.+++|.++|++      ||+++|+||+|++|.++|... ...+..+..+.+.+
T Consensus       171 ----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s  245 (398)
T 3ele_A          171 ----AHTRGVIINSPNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYS  245 (398)
T ss_dssp             ----TTEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEE
T ss_pred             ----cCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEe
Confidence                3678888877788888765 77779999999999      999999999999998776221 11233444556668


Q ss_pred             eccccc-cCccccccccCHHHHH------hhcCC-CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 011669          322 MAKGIG-NGIPLGAVVTTPEIAE------VLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       322 ~sK~~g-~G~pig~v~~~~~~~~------~l~~~-~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~  393 (480)
                      +||.++ +|+|+||+++++++++      .+... ....+++.++++++++.+.++   .....+++++..+++.+.|++
T Consensus       246 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~  322 (398)
T 3ele_A          246 YSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTR  322 (398)
T ss_dssp             STTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHH
Confidence            999999 8999999999987432      22211 122466778888887776654   333567778888888888877


Q ss_pred             hHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHH
Q 011669          394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       394 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~  471 (480)
                      +    ++.......|+++|+.+...         ....+.+.|.++||++.++..+  .+++||++.  +++++++++++
T Consensus       323 ~----g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~  387 (398)
T 3ele_A          323 I----GYHCFKPDGAFYMFVKALED---------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMP  387 (398)
T ss_dssp             H----TCCEECCSBSSEEEEECSSS---------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHH
T ss_pred             c----CCeecCCCeeEEEEEEcCCC---------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHH
Confidence            5    22111223355578876321         1456778889999999987544  479999964  79999999999


Q ss_pred             HHHHHHhh
Q 011669          472 VMDYSLSK  479 (480)
Q Consensus       472 ~l~~~l~~  479 (480)
                      +|++++++
T Consensus       388 ~l~~~l~~  395 (398)
T 3ele_A          388 AFEKIYKK  395 (398)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998865

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=2.5e-30  Score=263.62  Aligned_cols=338  Identities=14%  Similarity=0.091  Sum_probs=229.0

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc--ccccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEAN  171 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~--~~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~  171 (480)
                      .+|+++|||.+|..  .++ .+|.|.+++ +++.+....  ...+..+....+++.+.+..+  .+.++|++++||++|+
T Consensus        40 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~  115 (409)
T 2gb3_A           40 KRGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI  115 (409)
T ss_dssp             HTTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred             hcCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence            46889999998876  345 578999999 887653211  111122334444444444332  3457899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      +.+++.+.  .++++|++.+++||+........ +            ...+.+|......|.    . .++|++.++   
T Consensus       116 ~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~-g------------~~~~~v~~~~~~~~~----~-~~~l~~~l~---  172 (409)
T 2gb3_A          116 LFSFAVIA--NPGDEILVLEPFYANYNAFAKIA-G------------VKLIPVTRRMEEGFA----I-PQNLESFIN---  172 (409)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCTHHHHHHHHH-T------------CEEEEEECCGGGTSC----C-CTTGGGGCC---
T ss_pred             HHHHHHhC--CCCCEEEEcCCCchhHHHHHHHc-C------------CEEEEeccCCCCCCc----c-HHHHHHhhC---
Confidence            99999763  36789999999999876644322 1            111111111001111    0 134555553   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Cccee--eeccccc-
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIV--TMAKGIG-  327 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDiv--t~sK~~g-  327 (480)
                       +++++|+++++++++|.+. +++++++|.++|++||+++|+||+|+++.++| ..... ..+. ..|++  ++||.++ 
T Consensus       173 -~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~-~~~~~~~~i~~~s~sK~~g~  248 (409)
T 2gb3_A          173 -ERTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASA-LSIESDKVVVIDSVSKKFSA  248 (409)
T ss_dssp             -TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCG-GGSCCTTEEEEEESTTTTTC
T ss_pred             -cCCeEEEECCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCc-cccCCCCEEEEecchhccCC
Confidence             3678888888888888764 67899999999999999999999999987766 44333 1222 23554  7899999 


Q ss_pred             cCccccccccCH-HHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          328 NGIPLGAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       328 ~G~pig~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                      +|+|+||+++++ ++++.+.......+ +.|+++++++.++|+...  -+++.++++++.+++.+.|+++  .+..+ ..
T Consensus       249 ~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~-~~  324 (409)
T 2gb3_A          249 CGARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH--GLKRF-TK  324 (409)
T ss_dssp             GGGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCB-CC
T ss_pred             ccceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc--Cceee-eC
Confidence            799999999998 88887765444445 889999999988885321  1234455566666666666654  22220 12


Q ss_pred             eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc------CceeeccCcC-------CCEEEEeCCCCCCHHHHHHHHH
Q 011669          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM------GVLVGKGGFY-------GNVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~v~~~~~~-------~~~iRi~p~~~~t~~~id~~l~  471 (480)
                      ...|+++++.+. .        .....+.+.|+++      ||++.++..+       .+++||+++  +++++++++++
T Consensus       325 ~~~~~~~~~~~~-~--------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~  393 (409)
T 2gb3_A          325 PSGAFYITAELP-V--------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAID  393 (409)
T ss_dssp             CSBSSEEEEECS-S--------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHH
T ss_pred             CCeeEEEEEEeC-C--------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHH
Confidence            334677777763 1        0145688888877      9999886433       578999977  89999999999


Q ss_pred             HHHHHHhh
Q 011669          472 VMDYSLSK  479 (480)
Q Consensus       472 ~l~~~l~~  479 (480)
                      +|++++++
T Consensus       394 ~l~~~l~~  401 (409)
T 2gb3_A          394 VLMEGLKM  401 (409)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.97  E-value=1.8e-31  Score=273.78  Aligned_cols=342  Identities=13%  Similarity=0.066  Sum_probs=231.5

Q ss_pred             CEEEeccCCcccccCCCCCHHH--HHHHHHHHHhccccccccCCh-HHHHHHHHHHHhC-----CCCCCE---EEEeCCH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYV--VDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM-----PGNLKV---VFFTNSG  167 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v--~~A~~~~~~~~~~~~~~~~~~-~~~~l~e~L~~~~-----~~~~~~---v~f~~sG  167 (480)
                      +.++||..|.+. .+|+ +|.+  .+++.+++...  ....|... ...+++++|++++     +.+.++   |++++||
T Consensus        47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~  122 (430)
T 2x5f_A           47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPD--EIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL  122 (430)
T ss_dssp             TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGG--GTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred             CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence            568999998874 5674 6767  77777665431  11233332 3567777777776     656677   9999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccc-cccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      ++|++.+++.+..  +++.|++.+++||++...... .             |...+.+|..... |+.|    .+++++.
T Consensus       123 ~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~-------------g~~~~~~~~~~~~-~~~d----~~~l~~~  182 (430)
T 2x5f_A          123 THGLSLVGDLFVN--QDDTILLPEHNWGNYKLVFNTRN-------------GANLQTYPIFDKD-GHYT----TDSLVEA  182 (430)
T ss_dssp             HHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHTTTT-------------CCEEEEECCBCTT-SCBC----SHHHHHH
T ss_pred             hHHHHHHHHHHhC--CCCEEEEcCCcCccHHHHHHHhc-------------CCeEEEEeccCcc-CCcC----HHHHHHH
Confidence            9999999997643  568999999999997655433 2             2222222221111 2233    5678888


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH-----hCCEEEEcccccCccccCCCcccc--cccCCCcc-
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-----AGGLCIADEVQAGFARTGSHFWGF--EAHGVVPD-  318 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-----~gillI~DEv~tgfgr~G~~~~~~--~~~~~~pD-  318 (480)
                      ++... .+++++++...+|++|.+ ++.+++++|.++|++     ||+++|+||+|++|.+.|..+..+  ...+..++ 
T Consensus       183 l~~~~-~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (430)
T 2x5f_A          183 LQSYN-KDKVIMILNYPNNPTGYT-PTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNA  260 (430)
T ss_dssp             HHHCC-SSEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTT
T ss_pred             HHhcC-CCCEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCc
Confidence            86432 255655544448888876 578899999999999     999999999999998776212222  12122333 


Q ss_pred             -----eeeeccccc-cCcccccccc---CHHHHHhhcCCCcc----ccCCCcHHHHHHHHHHHH-Hh---hh-hHHHHHH
Q 011669          319 -----IVTMAKGIG-NGIPLGAVVT---TPEIAEVLTRRNYF----NTFGGNPVCTAAGHAVLK-VI---QK-DKLQNNA  380 (480)
Q Consensus       319 -----ivt~sK~~g-~G~pig~v~~---~~~~~~~l~~~~~~----~t~~~~~~~~aaa~a~L~-~i---~~-~~~~~~~  380 (480)
                           +.++||.++ +|+|+||+++   ++++++.+......    .+++.|+++++++.++|+ ..   +. +...+++
T Consensus       261 ~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  340 (430)
T 2x5f_A          261 ILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTL  340 (430)
T ss_dssp             EEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence                 457899998 7999999999   99998887654433    678899999999999987 32   11 1133444


Q ss_pred             HHHHHHHHHHHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcCCCEEEEeCC
Q 011669          381 HVVGSYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFYGNVFRITPP  458 (480)
Q Consensus       381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~iRi~p~  458 (480)
                      ++..+++.+.|++.....+ +....+. |+++|+.+. ..        ....+.+.|.+ +||++.+++  .+++||+++
T Consensus       341 ~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~~~~-~~--------~~~~~~~~l~~~~gi~v~~g~--~~~iRis~~  408 (430)
T 2x5f_A          341 KERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAIKVH-DV--------DPEALRKHLIDKYSIGVIALN--ATDIRIAFS  408 (430)
T ss_dssp             HHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEEEES-SS--------CHHHHHHHHHHHHCEECEECS--SSEEEEEGG
T ss_pred             HHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEeCCC-CC--------CHHHHHHHHHHhCCEEEecCC--CCeEEEEEe
Confidence            4444555554442110222 3333333 567888884 10        14567888887 999999873  578999987


Q ss_pred             CCCCHHHHHHHHHHHHHHHhh
Q 011669          459 LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~l~~  479 (480)
                      . .+++++++++++|++++++
T Consensus       409 ~-~~~e~i~~~~~~l~~~l~~  428 (430)
T 2x5f_A          409 C-VEKDDIPHVFDSIAKAIDD  428 (430)
T ss_dssp             G-SCGGGHHHHHHHHHHHHHH
T ss_pred             c-CCHHHHHHHHHHHHHHHHh
Confidence            5 5999999999999998865

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.97  E-value=6.3e-30  Score=258.11  Aligned_cols=333  Identities=12%  Similarity=0.061  Sum_probs=232.1

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccc----ccCC--hHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV----LYLN--HAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~----~~~~--~~~~~l~e~L~~~~~~~~~~v~f~~sGseA  170 (480)
                      ++..|+|..      ..|+.+|.|.+|+.+++....+...    .|..  +...+++++|+++++.+.++|++++||++|
T Consensus        15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a   88 (390)
T 1elu_A           15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG   88 (390)
T ss_dssp             TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred             CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence            456677743      2478889999999999876532111    2333  677899999999998766789999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      ++.+++.++ ..++++|++.+++||+...........         .|...+.+|......+..|    .+++++.++  
T Consensus        89 ~~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~~~~~~~~d----~~~l~~~i~--  152 (390)
T 1elu_A           89 CDIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAAR---------FGITYRFFPVAATLNQGDA----AAVLANHLG--  152 (390)
T ss_dssp             HHHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHHH---------HCCEEEEECCGGGSSSSCH----HHHHHTTCC--
T ss_pred             HHHHHhCCC-CCCCCEEEEecCcccHHHHHHHHHHHH---------hCcEEEEEcCCCCCCccch----HHHHHHhcC--
Confidence            999999774 236789999999999876542211100         0122222221110112222    566666653  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHH----HhCCEEEEcccccCccccCCCcccccccCCCcceee--ecc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK----KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAK  324 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~----~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK  324 (480)
                        +++++|+++++++++|.+.+    +++|.++|+    +||+++|+||+|+ +|..+     .+.....+|+++  ++|
T Consensus       153 --~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~-----~~~~~~~~d~~~~s~~K  220 (390)
T 1elu_A          153 --PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP-----LDFSRLEVDYYAFTGHK  220 (390)
T ss_dssp             --TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC-----CCTTTSCCSEEEEESSS
T ss_pred             --CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC-----CChhhcCCCEEEccccc
Confidence              36899999999999998876    999999999    9999999999997 55432     122234567775  889


Q ss_pred             ccccCccccccccCHHHHHhhcCCC----------------------ccccCCCcHHHHHHHHHHHHHhhhhH----HHH
Q 011669          325 GIGNGIPLGAVVTTPEIAEVLTRRN----------------------YFNTFGGNPVCTAAGHAVLKVIQKDK----LQN  378 (480)
Q Consensus       325 ~~g~G~pig~v~~~~~~~~~l~~~~----------------------~~~t~~~~~~~~aaa~a~L~~i~~~~----~~~  378 (480)
                      .+.+|.++|++++++++++.+....                      ...+.+.|+++++++.++++.+.+++    ..+
T Consensus       221 ~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~  300 (390)
T 1elu_A          221 WFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQ  300 (390)
T ss_dssp             TTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             cccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888999999999888776421                      11233457788888888888775543    455


Q ss_pred             HHHHHHHHHHHHHHHhHHhcCceeeE---eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEE
Q 011669          379 NAHVVGSYLKERLTALKDKYGIIGDV---RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRI  455 (480)
Q Consensus       379 ~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi  455 (480)
                      +.+++.+++.+.|+++    +.+..+   ++.|.++.+++....        ....+.+.|.++||++.++. ..+++||
T Consensus       301 ~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~~~-~~~~iRi  367 (390)
T 1elu_A          301 AICQRSEFLWRGLNQL----PHVHCLATSAPQAGLVSFTVDSPL--------GHRAIVQKLEEQRIYLRTIA-DPDCIRA  367 (390)
T ss_dssp             HHHHHHHHHHHHHHHS----TTEEESCSSCCSSSEEEEEECSSS--------CHHHHHHHHHHTTEECEEET-TTTEEEE
T ss_pred             HHHHHHHHHHHHHHhc----CCcEEecCccccccEEEEEcCCCC--------CHHHHHHHHHHCCEEEEecC-CCCeEEE
Confidence            5566666666666553    222222   456788888773211        14568888899999998874 3478999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHH
Q 011669          456 TPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~  476 (480)
                      +++...+++++++++++|+++
T Consensus       368 s~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          368 CCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             ECCTTCCHHHHHHHHHHHTTC
T ss_pred             ecccCCCHHHHHHHHHHHHhh
Confidence            999899999999999998753

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.97  E-value=9e-29  Score=251.20  Aligned_cols=333  Identities=19%  Similarity=0.192  Sum_probs=232.9

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc----ccc-CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST----VLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~----~~~-~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~  171 (480)
                      ||++|+||.++.. ..+|+ +|+|.+++.+++.+.....    ..| ..+...+++++|+++++. .+.+ +.++|++++
T Consensus        44 ~g~~~i~~~~~~~-~~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i-~~~sG~~a~  119 (401)
T 2bwn_A           44 GKQDITVWCGNDY-LGMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAAL-VFSSAYNAN  119 (401)
T ss_dssp             CEEEEEECSCSCT-TSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEE-EESCHHHHH
T ss_pred             CCCcEEEeeCCCc-ccCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEE-EECCcHHHH
Confidence            7899999987542 12333 7899999999998743211    112 346789999999999975 3455 457788899


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ..+++++....+++.|++..+.|++..... ...            |...+.+|.       +|    .++++++++...
T Consensus       120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~-~~~------------g~~~~~v~~-------~d----~~~le~~l~~~~  175 (401)
T 2bwn_A          120 DATLSTLRVLFPGLIIYSDSLNHASMIEGI-KRN------------AGPKRIFRH-------ND----VAHLRELIAADD  175 (401)
T ss_dssp             HHHHHHHHHHSTTCEEEEETTCCHHHHHHH-HHS------------CCCEEEECT-------TC----HHHHHHHHHHSC
T ss_pred             HHHHHHHhcCCCCCEEEECchhhHHHHHHH-HHc------------CCeEEEEcC-------CC----HHHHHHHHHhhc
Confidence            999886532235577888887776554332 221            222222221       12    577888887543


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc--CccccCCCcccccccCC----Ccceeeeccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA--GFARTGSHFWGFEAHGV----VPDIVTMAKG  325 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t--gfgr~G~~~~~~~~~~~----~pDivt~sK~  325 (480)
                      ++++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+  .||++| ..+. ...++    .+.+.+|||+
T Consensus       176 ~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g-~~~~-~~~~~~~~~~i~~~s~sK~  249 (401)
T 2bwn_A          176 PAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRG-AGVA-ERDGLMHRIDIFNGTLAKA  249 (401)
T ss_dssp             TTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-CCHH-HHHTCGGGCSEEEEESSST
T ss_pred             cCCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCC-ceee-eccCccccCcEEEeechhh
Confidence            247889999999999998876    9999999999999999999998  356565 2222 23333    3334489999


Q ss_pred             cc-cCccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          326 IG-NGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       326 ~g-~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      ++ .|   ||+++++++++.+....  ...+.+.++++++++.++|+.+++.   +..++++++.+++++.|+++  .+.
T Consensus       250 ~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  324 (401)
T 2bwn_A          250 YGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMP  324 (401)
T ss_dssp             TCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCC
T ss_pred             ccCCC---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCc
Confidence            98 35   88999998887765321  1123345678899999999987653   67788888888888888876  333


Q ss_pred             ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC-----CCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY-----GNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       400 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~-----~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                      .+   ...|.++++.+.        .......+.+.|+ ++||.+.++..+     .+++||+++..+|++|+++++++|
T Consensus       325 ~~---~~~~~~~~~~~~--------~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l  393 (401)
T 2bwn_A          325 II---DHGSHIVPVVIG--------DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAM  393 (401)
T ss_dssp             BC---CCSSSCEEEECC--------CHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred             cc---CCCCCeEEEEeC--------ChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHH
Confidence            22   234557787762        2234567888886 789999876432     258999999889999999999999


Q ss_pred             HHHHhh
Q 011669          474 DYSLSK  479 (480)
Q Consensus       474 ~~~l~~  479 (480)
                      ++++++
T Consensus       394 ~~~~~~  399 (401)
T 2bwn_A          394 DLLWAR  399 (401)
T ss_dssp             HHHC--
T ss_pred             HHHHHh
Confidence            998765

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.97  E-value=2e-29  Score=252.69  Aligned_cols=327  Identities=14%  Similarity=0.115  Sum_probs=230.5

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      +.+|||.++...  ++ .+|+|++|+.+++...    ..|++....+++++|+++++.+.++|++++||++|++.+++..
T Consensus        30 ~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l  102 (365)
T 3get_A           30 KEVIKLASNENP--FG-TPPKAIECLRQNANKA----HLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK  102 (365)
T ss_dssp             SCCEECSSCCCT--TC-SCHHHHHHHHHHGGGT----TSCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred             CceEEecCCCCC--CC-CCHHHHHHHHHHHHhh----ccCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence            678999888654  44 7899999999988743    2344443478999999999776789999999999999999876


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                      ..  ++++|++.+++|++........             |...+.+|. .    ..+. ...+++++.++    .++++|
T Consensus       103 ~~--~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~-~----~~~~-~d~~~l~~~l~----~~~~~v  157 (365)
T 3get_A          103 LN--SKNAFLQAGVTFAMYEIYAKQC-------------GAKCYKTQS-I----THNL-DEFKKLYETHK----DEIKLI  157 (365)
T ss_dssp             CC--TTCEEEECSSCCTHHHHHHHHH-------------TCEEEECSS-S----SCCH-HHHHHHHHHTT----TTEEEE
T ss_pred             hC--CCCEEEEeCCChHHHHHHHHHc-------------CCEEEEEec-C----CCCC-CCHHHHHHHhC----CCCCEE
Confidence            43  6789999999998776544332             222333322 0    0233 33677777775    378888


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccc--cCCCccc-c---cccCCCcceeeeccccc-cCcc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGSHFWG-F---EAHGVVPDIVTMAKGIG-NGIP  331 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr--~G~~~~~-~---~~~~~~pDivt~sK~~g-~G~p  331 (480)
                      +++.+++++|.+. +.+.+++|.++| ++|+++|+||+|++|.+  .+..... .   +..+....+.++||.++ +|+|
T Consensus       158 ~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  235 (365)
T 3get_A          158 FLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLR  235 (365)
T ss_dssp             EEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTC
T ss_pred             EEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchh
Confidence            8877788888876 555566666666 67999999999998763  2211111 1   22344445568999998 8999


Q ss_pred             ccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecccee
Q 011669          332 LGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (480)
Q Consensus       332 ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~  410 (480)
                      +||+++++++++.+....  .+++.|+++++++.++|+..+. ++..++.+++.+++++.|++    ++ +...++.|.+
T Consensus       236 ~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~g-~~~~~~~~~~  308 (365)
T 3get_A          236 IGYGIANANIISAFYKLR--APFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKK----HN-IKIIDSYTNF  308 (365)
T ss_dssp             CEEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH----TT-CEECCCSSSE
T ss_pred             eEEEEcCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----CC-CEECCCCCeE
Confidence            999999999988876533  3467899999999988873210 22333444444444444444    33 3345677888


Q ss_pred             EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +++.+...         ....+.+.|.++||++.++..+ .+++||+++   +++|+++++++|+++++
T Consensus       309 ~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l~  365 (365)
T 3get_A          309 ITYFFDEK---------NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKILR  365 (365)
T ss_dssp             EEEECSSS---------CHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCC---------CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHhC
Confidence            88877321         2567888899999999987655 489999954   89999999999998863

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.97  E-value=6.2e-30  Score=255.97  Aligned_cols=317  Identities=14%  Similarity=0.118  Sum_probs=222.4

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~  177 (480)
                      .+++|||.+|.  +.+|+. |.|  ++    .    ....|+.+...+++++|+++++.+.++|++++||+||++.+++.
T Consensus        28 ~~~~i~l~~~~--~~~~~~-~~v--a~----~----~~~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~   94 (356)
T 1fg7_A           28 GNGDVWLNANE--YPTAVE-FQL--TQ----Q----TLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRA   94 (356)
T ss_dssp             TTCSEECSSCC--CSSCCC-CCC--CC----C----CTTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH
T ss_pred             CCceEEeeCCC--CCCCCC-HhH--hh----h----hhccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHH
Confidence            35789999887  456874 566  21    1    12345555578899999999977777899999999999999997


Q ss_pred             HHhhcCC-ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          178 ARLYTGC-NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       178 ar~~~~~-~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      +..  ++ ++|++.+++||++...+...             |...+.+|..  ..|..|    .+++++.++     +++
T Consensus        95 ~~~--~g~d~Vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~i~-----~~~  148 (356)
T 1fg7_A           95 FCE--PGKDAILYCPPTYGMYSVSAETI-------------GVECRTVPTL--DNWQLD----LQGISDKLD-----GVK  148 (356)
T ss_dssp             HCC--TTTCEEEECSSSCTHHHHHHHHH-------------TCEEEECCCC--TTSCCC----HHHHHTSCT-----TEE
T ss_pred             HhC--CCCCEEEEeCCChHHHHHHHHHc-------------CCEEEEeeCC--CCCCCC----HHHHHHHhc-----CCC
Confidence            643  45 89999999999977655433             2222222221  123334    456655542     567


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccCCCcceeeeccccc-cCccccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGIPLGA  334 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~~~pDivt~sK~~g-~G~pig~  334 (480)
                      +|++.+.+|++|.+. +.+++++|.++|+ ||+++|+||+|++|+... .++.. +.++....+.++||.+| +|+|+||
T Consensus       149 ~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~  225 (356)
T 1fg7_A          149 VVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQA-SLAGWLAEYPHLAILRTLSKAFALAGLRCGF  225 (356)
T ss_dssp             EEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG-CSGGGTTTCTTEEEEEESSSTTCCGGGCCEE
T ss_pred             EEEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhcCCC-cHHHHHhhCCCEEEEecchHhhcCchhhhEE
Confidence            777777788888774 7788999999999 999999999999887432 33332 33344455668999999 8999999


Q ss_pred             cccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhHHhcCc-eeeEecccee
Q 011669          335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---KDKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFL  410 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~---~~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~  410 (480)
                      +++++++++.+....  .+|+.|+++++++.++|+...   -++..+++++.++++.+.|++    ++. ....++.|++
T Consensus       226 ~~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~  299 (356)
T 1fg7_A          226 TLANEEVINLLMKVI--APYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNY  299 (356)
T ss_dssp             EEECHHHHHHHHHHS--CSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSE
T ss_pred             EEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh----CCCceEECCCCCeE
Confidence            999999988776532  456789999999998886422   122333444444455444443    442 2334567888


Q ss_pred             EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec-cCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK-GGFY--GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      +++++.           ....+.+.|.++||++.+ +..+  .+++||+++   +++|+++++++|+++
T Consensus       300 ~~~~~~-----------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          300 ILARFK-----------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRAE  354 (356)
T ss_dssp             EEEEET-----------THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred             EEEECC-----------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence            888873           145688888999999998 5333  368999965   689999999998763

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.97  E-value=8e-31  Score=267.30  Aligned_cols=343  Identities=13%  Similarity=0.050  Sum_probs=226.8

Q ss_pred             CCCEEEeccCCcccccCCCC--CHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCCC------CCCEEEE--eC
Q 011669           97 NGRRYLDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF--TN  165 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~------~~~~v~f--~~  165 (480)
                      +|+.++||..|.+....||.  +|.|.+++.+++.+... ...| +.....+++++|+++++.      +.++|+|  |+
T Consensus        28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~  106 (412)
T 1ajs_A           28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSL-NHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSL  106 (412)
T ss_dssp             CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred             CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhh-ccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECC
Confidence            36778999998865445554  48999999888732111 1123 344567788888887732      4578999  99


Q ss_pred             CHHHHHHHHHHHHHhhcCC-----ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHH
Q 011669          166 SGTEANELAIMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA  240 (480)
Q Consensus       166 sGseA~~~Alk~ar~~~~~-----~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~  240 (480)
                      ||++|++.++++++...++     +.|++.+++||++...+......          .+..++..  ....|..|    .
T Consensus       107 gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~----------~~~~~~~~--~~~~~~~d----~  170 (412)
T 1ajs_A          107 GGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK----------DIRSYRYW--DTEKRGLD----L  170 (412)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCS----------CEEEEECE--ETTTTEEC----H
T ss_pred             CcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCc----------eeEEEeee--cCCCCccC----H
Confidence            9999999999876655566     89999999999977655443221          01122210  00112223    5


Q ss_pred             HHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC--CCcccccccCCCcc
Q 011669          241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG--SHFWGFEAHGVVPD  318 (480)
Q Consensus       241 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G--~~~~~~~~~~~~pD  318 (480)
                      +++++.++... .+++++++...++++|.+ ++.+++++|.++|++||+++|+||+|++|+++|  ...+.+......+|
T Consensus       171 ~~l~~~l~~~~-~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
T 1ajs_A          171 QGFLSDLENAP-EFSIFVLHACAHNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGF  248 (412)
T ss_dssp             HHHHHHHHHSC-TTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred             HHHHHHHHhCC-CCcEEEEECCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCC
Confidence            77888876432 245666656666677765 588899999999999999999999999998764  12223332211233


Q ss_pred             ----eeeecccccc-Ccccccccc---CHHHHHh----hcCCCccccCC-CcHHHHHHHHHHHHHhh--------hhHHH
Q 011669          319 ----IVTMAKGIGN-GIPLGAVVT---TPEIAEV----LTRRNYFNTFG-GNPVCTAAGHAVLKVIQ--------KDKLQ  377 (480)
Q Consensus       319 ----ivt~sK~~g~-G~pig~v~~---~~~~~~~----l~~~~~~~t~~-~~~~~~aaa~a~L~~i~--------~~~~~  377 (480)
                          +.++||.++. |+|+||+++   ++++++.    +... +..+++ .|+++++++.++|+...        -++..
T Consensus       249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  327 (412)
T 1ajs_A          249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMA  327 (412)
T ss_dssp             CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             cEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence                5589999996 999999999   8874433    3221 224555 58999999999987542        13455


Q ss_pred             HHHHHHHHHHHHHHHHhHHhcC-ceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEE
Q 011669          378 NNAHVVGSYLKERLTALKDKYG-IIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRI  455 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~~~~-~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi  455 (480)
                      ++++++++++.+.|+++.  .+ .+.. ....|+++|+.+        +    ...+...+.++||++.++      +||
T Consensus       328 ~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~~------~Ri  387 (412)
T 1ajs_A          328 DRILSMRSELRARLEALK--TPGTWNHITDQIGMFSFTGL--------N----PKQVEYLINQKHIYLLPS------GRI  387 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CSSCCHHHHHCCSSEEECCC--------C----HHHHHHHHHTTCEECCTT------SEE
T ss_pred             HHHHHHHHHHHHHHHhhC--CCCCeeEEcCCCceEEEeCC--------C----HHHHHHHHHhCCEEecCC------cEE
Confidence            566666666666666541  01 1211 233456666543        1    234555667889999864      599


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          456 TPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      +++. .+++++++++++|+++++++
T Consensus       388 s~~~-~~~~~i~~~~~~l~~~l~~~  411 (412)
T 1ajs_A          388 NMCG-LTTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             EGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred             Eeee-CCHHHHHHHHHHHHHHHHhc
Confidence            9663 58999999999999998764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.97  E-value=5.9e-31  Score=266.62  Aligned_cols=345  Identities=13%  Similarity=0.036  Sum_probs=218.1

Q ss_pred             EEeCCCCEEEeccCCcccccCC--CCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCCC------CCCEEEE
Q 011669           93 LFDENGRRYLDAFGGIATVCCG--HCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF  163 (480)
Q Consensus        93 l~d~dG~~ylD~~~g~~~~~lG--h~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~------~~~~v~f  163 (480)
                      +.+..|+.+|||..|.+..+.|  +.+|+|.+++.+++.+. . ...| ......+++++|++++..      +.++|+|
T Consensus        20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~   97 (396)
T 2q7w_A           20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE-T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRART   97 (396)
T ss_dssp             --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHC-C-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcc-c-ccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence            3344567899999998655555  56799999999987653 1 1223 344567788888877621      2567888


Q ss_pred             --eCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHH
Q 011669          164 --TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK  241 (480)
Q Consensus       164 --~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~  241 (480)
                        ++||++|++.++++++...+++.|++.+++||++...+...+.             ..+.+|......|..|    .+
T Consensus        98 ~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d----~~  160 (396)
T 2q7w_A           98 AQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGL-------------EVREYAYYDAENHTLD----FD  160 (396)
T ss_dssp             EEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECEETTTTEEC----HH
T ss_pred             EecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCC-------------ceEEEecccCCCCCcC----HH
Confidence              9999999999999876555788999999999998766544321             1111111000112223    67


Q ss_pred             HHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC-CCcccccccCCCcc--
Q 011669          242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-SHFWGFEAHGVVPD--  318 (480)
Q Consensus       242 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G-~~~~~~~~~~~~pD--  318 (480)
                      ++++.++.. ..+++++++...+|++|.+ ++.+++++|.++|++||+++|+||+|++|++.| ...+.+......+|  
T Consensus       161 ~l~~~l~~~-~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (396)
T 2q7w_A          161 ALINSLNEA-QAGDVVLFHGCCHNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKEL  238 (396)
T ss_dssp             HHHHHHTTC-CTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCE
T ss_pred             HHHHHHHhC-CCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcE
Confidence            888888642 1246677767777777875 578899999999999999999999999987653 01222222211122  


Q ss_pred             --eeeeccccc-cCcccccccc---CHH----HHHhhcCCCccccCCCcHHHHHHHHHHHHHhh------h--hHHHHHH
Q 011669          319 --IVTMAKGIG-NGIPLGAVVT---TPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ------K--DKLQNNA  380 (480)
Q Consensus       319 --ivt~sK~~g-~G~pig~v~~---~~~----~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~------~--~~~~~~~  380 (480)
                        +.++||.+| +|+|+||+++   +++    +++.+.......+.+.|+++++++.++|+...      +  +...+++
T Consensus       239 i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~  318 (396)
T 2q7w_A          239 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRI  318 (396)
T ss_dssp             EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHH
T ss_pred             EEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence              458999999 7999999996   553    44444321122233458999999988886430      0  1223344


Q ss_pred             HHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCC
Q 011669          381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLC  460 (480)
Q Consensus       381 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~  460 (480)
                      ++..+++.+.|+++.....+.......|+++|+.+        +    ...+.+.+.++||++.++      +||+++. 
T Consensus       319 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~~------~Ris~~~-  379 (396)
T 2q7w_A          319 QRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL--------T----KEQVLRLREEFGVYAVAS------GRVNVAG-  379 (396)
T ss_dssp             HHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGGG-
T ss_pred             HHHHHHHHHHHHhcCCCCCcceecCCCceEEEecC--------C----HHHHHHHHHhcCeeecCC------ceEEEee-
Confidence            44455555555443100001111223466666543        1    134666777899999863      6999874 


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 011669          461 FTKEDADYLVDVMDYSL  477 (480)
Q Consensus       461 ~t~~~id~~l~~l~~~l  477 (480)
                      .|++++++++++|++++
T Consensus       380 ~~~e~i~~~~~~l~~~l  396 (396)
T 2q7w_A          380 MTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             CCTTTHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHhcC
Confidence            49999999999998763

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.97  E-value=6.1e-30  Score=259.98  Aligned_cols=335  Identities=15%  Similarity=0.102  Sum_probs=227.2

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc--ccccC-ChHHHHHHHHHHHhC--C-CCCCEEEEeCCHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TVLYL-NHAIADFAEALASKM--P-GNLKVVFFTNSGTEAN  171 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~--~~~~~-~~~~~~l~e~L~~~~--~-~~~~~v~f~~sGseA~  171 (480)
                      |+.+|||..|...  + ..+|.|.+++.+++++..+.  ...|. .....+++++|++++  + .+.++|++++|+++++
T Consensus        32 ~~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al  108 (400)
T 3asa_A           32 QHTVINLSIGDTT--Q-PLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL  108 (400)
T ss_dssp             TSCCEECSSCCCC--C-CCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred             CCceEeccCCCCC--C-CCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence            6789999888654  3 36899999999998765321  12342 345688999999984  4 4567899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      +.+++++   .+++.|++.+++|++........ +..         .+..++..  ..+.+..|       +++    . 
T Consensus       109 ~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~~~-g~~---------~~~~~~~~--~~~~~~~~-------l~~----~-  161 (400)
T 3asa_A          109 FRLLSFF---GPNQTVAIQDPSYPAYLDIARLT-GAK---------EIIALPCL--QENAFFPE-------FPE----D-  161 (400)
T ss_dssp             HHHHHHH---CSSCEEEEEESCCHHHHHHHHHT-TCS---------EEEEEECC--GGGTTCCC-------CCT----T-
T ss_pred             HHHHHHc---CCCCEEEECCCCcHHHHHHHHHc-CCc---------ceEecccc--hhcCcccC-------hhh----c-
Confidence            9876543   46789999999999976543322 211         01222211  11112111       111    0 


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccC----CCcceeeeccccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG----VVPDIVTMAKGIG  327 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~----~~pDivt~sK~~g  327 (480)
                       +++++|++++.+|++|.+ ++.+++++|.++|++||+++|+||+|++|++.|.........+    ....+.+|||.+|
T Consensus       162 -~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g  239 (400)
T 3asa_A          162 -THIDILCLCSPNNPTGTV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG  239 (400)
T ss_dssp             -CCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT
T ss_pred             -cCccEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC
Confidence             356778877778888876 4788999999999999999999999999877662122222222    2334668999998


Q ss_pred             -cCccccccccCHHH-------HHhhcCCCccccC-CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669          328 -NGIPLGAVVTTPEI-------AEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY  398 (480)
Q Consensus       328 -~G~pig~v~~~~~~-------~~~l~~~~~~~t~-~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~  398 (480)
                       +|+|+||+++++++       ++.+.......++ +.|+++++++.++|+....++..++++++.+++++.|+++    
T Consensus       240 ~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----  315 (400)
T 3asa_A          240 FAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT----  315 (400)
T ss_dssp             TTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----
T ss_pred             CcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence             89999999999887       5544322233445 5789999999988876433466777788888888877764    


Q ss_pred             CceeeEec-cceeEEEE-EecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHH
Q 011669          399 GIIGDVRG-RGFLLGVE-FVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVD  471 (480)
Q Consensus       399 ~~~~~v~g-~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~  471 (480)
                      ++ ....+ .|+++|++ +.....        ...+.+.|++ +||++.++..+    .+++||+  +..++++++++++
T Consensus       316 g~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~  384 (400)
T 3asa_A          316 GF-EVFGGEHAPYLWVKPTQANIS--------DRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACE  384 (400)
T ss_dssp             TC-EEEECSSSSEEEEECCCTTCC--------TTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHH
T ss_pred             CC-eeeCCCCceEEEEeccCCCCC--------HHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHH
Confidence            32 22333 47788888 532110        1246666664 59999987543    4689999  5789999999999


Q ss_pred             HHHHHHhh
Q 011669          472 VMDYSLSK  479 (480)
Q Consensus       472 ~l~~~l~~  479 (480)
                      +|++++++
T Consensus       385 ~l~~~~~~  392 (400)
T 3asa_A          385 RLQMAPAL  392 (400)
T ss_dssp             HHHC----
T ss_pred             HHHHHHHh
Confidence            99988764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.97  E-value=9e-30  Score=259.85  Aligned_cols=346  Identities=13%  Similarity=0.064  Sum_probs=223.6

Q ss_pred             CEEEeccCCcccc-cCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhCC------------CCCCEEEEe
Q 011669           99 RRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP------------GNLKVVFFT  164 (480)
Q Consensus        99 ~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~~------------~~~~~v~f~  164 (480)
                      +.+|||..|.+.. +-.+.+|.|.+++.+++.+..  ...|. .....++++++++++.            .+.++|+++
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~  110 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE--CNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLC  110 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC--SSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEE
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc--cCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEe
Confidence            5689998887642 113678999999999987632  11232 2234556666665554            356789999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHH
Q 011669          165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ  244 (480)
Q Consensus       165 ~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le  244 (480)
                      +||++|++.+++.+..  +++.|++.+++||++.......             |...+.+|......|..|    .++++
T Consensus       111 ~g~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~  171 (416)
T 1bw0_A          111 SGGSHGILMAITAICD--AGDYALVPQPGFPHYETVCKAY-------------GIGMHFYNCRPENDWEAD----LDEIR  171 (416)
T ss_dssp             SHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEEEEGGGTTEEC----HHHHH
T ss_pred             CChHHHHHHHHHHhCC--CCCEEEEcCCCcHhHHHHHHHc-------------CcEEEEeecCcccCCCCC----HHHHH
Confidence            9999999999997642  5689999999999876543322             222222211111112223    57787


Q ss_pred             HHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC----CcccccccCCC---c
Q 011669          245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS----HFWGFEAHGVV---P  317 (480)
Q Consensus       245 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~----~~~~~~~~~~~---p  317 (480)
                      +.++.    +++++++...++++|.+ .+++++++|.++|++||+++|+||+|++|.++|.    .+..+...+..   .
T Consensus       172 ~~l~~----~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i  246 (416)
T 1bw0_A          172 RLKDD----KTKLLIVTNPSNPCGSN-FSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRV  246 (416)
T ss_dssp             HHCCT----TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEE
T ss_pred             HHhcc----CCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEE
Confidence            77752    44555444447778876 5788999999999999999999999999877662    12222222222   2


Q ss_pred             ceeeeccccc-cCccccccccCHH--HHHhhcCC---CccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHH
Q 011669          318 DIVTMAKGIG-NGIPLGAVVTTPE--IAEVLTRR---NYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLK  388 (480)
Q Consensus       318 Divt~sK~~g-~G~pig~v~~~~~--~~~~l~~~---~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~  388 (480)
                      .+.++||.++ +|+|+||++++++  +++.+...   ....+++.|+++++++.++|+.+.+   ++..++++++.+++.
T Consensus       247 ~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  326 (416)
T 1bw0_A          247 ILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLY  326 (416)
T ss_dssp             EEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            2347899987 6999999998763  33333211   1124678899999999999874322   223344444455555


Q ss_pred             HHHHHhHHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC--CCEEEEeCCCCCCHH
Q 011669          389 ERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY--GNVFRITPPLCFTKE  464 (480)
Q Consensus       389 ~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~  464 (480)
                      +.|+    +++.+..+.+ .|+++++.+.....   +.......+.+.| .++||++.++..+  .+++||++  ..+++
T Consensus       327 ~~L~----~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e  397 (416)
T 1bw0_A          327 NHIG----ECIGLAPTMPRGAMYLMSRIDLEKY---RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVE  397 (416)
T ss_dssp             HHHT----TSTTEEECCCCBTTEEEEEECGGGB---SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHH
T ss_pred             HHHH----hCCCCcccCCCeeEEEEEeCCHHHc---CCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHH
Confidence            4444    3433433333 47788887742100   0001135577777 4889999987544  37899996  47899


Q ss_pred             HHHHHHHHHHHHHhh
Q 011669          465 DADYLVDVMDYSLSK  479 (480)
Q Consensus       465 ~id~~l~~l~~~l~~  479 (480)
                      ++++++++|.+++++
T Consensus       398 ~l~~~l~~l~~~l~~  412 (416)
T 1bw0_A          398 VYREAVERIKAFCQR  412 (416)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998864

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.97  E-value=1.3e-28  Score=249.76  Aligned_cols=323  Identities=14%  Similarity=0.086  Sum_probs=223.9

Q ss_pred             CCCCHHHHHHHHHHHHhcc---cccc----ccCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHh--hcC
Q 011669          114 GHCHPYVVDSIVNQIKRIQ---HSTV----LYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARL--YTG  183 (480)
Q Consensus       114 Gh~~p~v~~A~~~~~~~~~---~~~~----~~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~--~~~  183 (480)
                      |+.+|+|.+|+.+++.+..   +...    ....+...+++++|+++++. +.++|+|++||++|++.+++.++.  ..+
T Consensus        33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~  112 (406)
T 1kmj_A           33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRA  112 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCT
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCC
Confidence            4788999999999998752   1110    01345678999999999986 567899999999999999998752  346


Q ss_pred             CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEccc
Q 011669          184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI  263 (480)
Q Consensus       184 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi  263 (480)
                      +++|++.+++||+...........         .|...+.+|...  .+..|    .+++++.++    +++++|+++++
T Consensus       113 gd~vl~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~--~~~~d----~~~l~~~l~----~~~~~v~~~~~  173 (406)
T 1kmj_A          113 GDNIIISQMEHHANIVPWQMLCAR---------VGAELRVIPLNP--DGTLQ----LETLPTLFD----EKTRLLAITHV  173 (406)
T ss_dssp             TCEEEEETTCCGGGTHHHHHHHHH---------HTCEEEEECBCT--TSCBC----GGGHHHHCC----TTEEEEEEESB
T ss_pred             CCEEEEecccchHHHHHHHHHHHh---------CCCEEEEEecCC--CCCcC----HHHHHHHhc----cCCeEEEEeCC
Confidence            789999999999875432211100         011121121111  11123    456777774    36899999999


Q ss_pred             CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccccccCHHH
Q 011669          264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEI  341 (480)
Q Consensus       264 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~  341 (480)
                      ++++|.+.+    +++|.++|++||+++|+||+|+. |...   +....  ..+|++  +++|.+|. ..+|++++++++
T Consensus       174 ~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~~---~~~~~--~~~d~~~~s~~K~~g~-~G~G~~~~~~~~  242 (406)
T 1kmj_A          174 SNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHHP---VDVQA--LDCDFYVFSGHKLYGP-TGIGILYVKEAL  242 (406)
T ss_dssp             CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC---CCHHH--HTCSEEEEEGGGTTSC-TTCEEEEECHHH
T ss_pred             CccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCCC---Ccccc--cCCCEEEEEchhccCC-CCcEEEEEeHHH
Confidence            999998876    99999999999999999999973 3321   12222  246765  68999952 228999999999


Q ss_pred             HHhhcCCCcc---------------------ccCCCcHHHHHHHH-HHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHH
Q 011669          342 AEVLTRRNYF---------------------NTFGGNPVCTAAGH-AVLKVIQKD---KLQNNAHVVGSYLKERLTALKD  396 (480)
Q Consensus       342 ~~~l~~~~~~---------------------~t~~~~~~~~aaa~-a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~  396 (480)
                      ++.+.....+                     .+.+.+++.+++++ ++++.+.++   ++.++.+++.+++.+.|+++  
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--  320 (406)
T 1kmj_A          243 LQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV--  320 (406)
T ss_dssp             HHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred             HhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC--
Confidence            9887654321                     12345666666666 778876543   55666666777777666553  


Q ss_pred             hcCceeeEec--cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--------C--CCEEEEeCCCCCCHH
Q 011669          397 KYGIIGDVRG--RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--------Y--GNVFRITPPLCFTKE  464 (480)
Q Consensus       397 ~~~~~~~v~g--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~--~~~iRi~p~~~~t~~  464 (480)
                        +.+.....  .|.++.+.+. ..        ....+.+.|.++||.+.++..        +  .+++||+++..+|++
T Consensus       321 --~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~  389 (406)
T 1kmj_A          321 --PDLTLYGPQNRLGVIAFNLG-KH--------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHE  389 (406)
T ss_dssp             --TTEEEESCTTCCSEEEEEET-TC--------CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHH
T ss_pred             --CCeEEecCCCcCCEEEEEEC-CC--------CHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHH
Confidence              32333333  6777777652 10        135677888999999987642        1  478999999889999


Q ss_pred             HHHHHHHHHHHHHhh
Q 011669          465 DADYLVDVMDYSLSK  479 (480)
Q Consensus       465 ~id~~l~~l~~~l~~  479 (480)
                      |+++++++|+++++.
T Consensus       390 ~i~~~~~~l~~~~~~  404 (406)
T 1kmj_A          390 EVDRLVTGLQRIHRL  404 (406)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998764

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.97  E-value=1.2e-30  Score=264.19  Aligned_cols=339  Identities=14%  Similarity=0.076  Sum_probs=225.2

Q ss_pred             CCCEEEeccCCcccccCC--CCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC-CC--CCCEEEE--eCCHH
Q 011669           97 NGRRYLDAFGGIATVCCG--HCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM-PG--NLKVVFF--TNSGT  168 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lG--h~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~-~~--~~~~v~f--~~sGs  168 (480)
                      .|..+|||..|.+..+.|  +.+|.|.+++.+++.+. . ...|. .....+++++|++++ ..  +.++|+|  ++||+
T Consensus        24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~  101 (394)
T 2ay1_A           24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE-T-TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGT  101 (394)
T ss_dssp             CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHC-C-CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHH
T ss_pred             CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCc-c-cCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCch
Confidence            356689999998755555  67899999999987652 1 12232 344567777777775 22  4578999  99999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +|++.++++++.+.++++|++.+++||++...+...+.           .+..++..  ....++.|    .+++++.++
T Consensus       102 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~l~  164 (394)
T 2ay1_A          102 GALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-----------PVQTYRYF--DAETRGVD----FEGMKADLA  164 (394)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTC-----------CEEEEECE--ETTTTEEC----HHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCC-----------ceEEEecc--cccCCccC----HHHHHHHHH
Confidence            99999999877655778999999999998765544322           11122211  00112223    677888887


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Cccccccc-CCCcc---eeeec
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAH-GVVPD---IVTMA  323 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~~~~-~~~pD---ivt~s  323 (480)
                      .. +..++++++.+.+|++|.+ ++.+++++|.++|++||+++|+||+|++|+++|. ..+.+... ...++   +.++|
T Consensus       165 ~~-~~~~~~~~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  242 (394)
T 2ay1_A          165 AA-KKGDMVLLHGCCHNPTGAN-LTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCS  242 (394)
T ss_dssp             TC-CTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECT
T ss_pred             hC-CCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEecc
Confidence            43 2246777778888888876 5788999999999999999999999999876530 11122211 11233   34789


Q ss_pred             cccc-cCcccccccc---CHHHHHhhcCC---CccccC-CCcHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHH
Q 011669          324 KGIG-NGIPLGAVVT---TPEIAEVLTRR---NYFNTF-GGNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSYL  387 (480)
Q Consensus       324 K~~g-~G~pig~v~~---~~~~~~~l~~~---~~~~t~-~~~~~~~aaa~a~L~~i~--------~~~~~~~~~~~~~~l  387 (480)
                      |.+| +|+|+||+++   ++++++.+...   ....++ +.|+++++++.++|+...        -++..+++++..+++
T Consensus       243 K~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l  322 (394)
T 2ay1_A          243 KNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQL  322 (394)
T ss_dssp             TTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 8999999998   67654433211   112334 348899999998887431        123445555566666


Q ss_pred             HHHHHHhHHhcCceeeEe-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHH
Q 011669          388 KERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDA  466 (480)
Q Consensus       388 ~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~i  466 (480)
                      .+.|+++.... .+.... ..|+++|+++        +    ...+.+.|.++||++.++      +||+++ .++++++
T Consensus       323 ~~~L~~~~~~~-~~~~~~~~~g~~~~~~~--------~----~~~~~~~l~~~gi~v~~~------~Ris~~-~~~~~~i  382 (394)
T 2ay1_A          323 AGELRDLSGSD-RFGFVAEHRGMFSRLGA--------T----PEQVKRIKEEFGIYMVGD------SRINIA-GLNDNTI  382 (394)
T ss_dssp             HHHHHHHHTSS-TTTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGG-GCCTTTH
T ss_pred             HHHHHhcCCCC-CeeEEcCCceEEEeeCC--------C----HHHHHHHHHhCCEEecCC------CeEEee-cCCHhhH
Confidence            66665542100 121122 3477777654        1    134667777899999864      599977 5799999


Q ss_pred             HHHHHHHHHH
Q 011669          467 DYLVDVMDYS  476 (480)
Q Consensus       467 d~~l~~l~~~  476 (480)
                      ++++++|+++
T Consensus       383 ~~~~~~l~~~  392 (394)
T 2ay1_A          383 PILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999999875

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.97  E-value=7.4e-29  Score=250.68  Aligned_cols=342  Identities=13%  Similarity=0.078  Sum_probs=225.0

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc--ccccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE  172 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~--~~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~~  172 (480)
                      +|+.++||..|...  ++ .+|.+.+++.+.+......  ...+..+...++++.+.+..+  .+.++|++|+||++|++
T Consensus        29 ~~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~  105 (385)
T 1b5p_A           29 QGVDLVALTAGEPD--FD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF  105 (385)
T ss_dssp             TTCCCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence            35567888877653  33 4689999999888653211  111123344455555544443  24578999999999999


Q ss_pred             HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (480)
Q Consensus       173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (480)
                      .+++...  .+++.|++.+++|+++.......             |...+.+|......|..|    .++++++++    
T Consensus       106 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~----  162 (385)
T 1b5p_A          106 NLFQAIL--DPGDEVIVLSPYWVSYPEMVRFA-------------GGVVVEVETLPEEGFVPD----PERVRRAIT----  162 (385)
T ss_dssp             HHHHHHC--CTTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHTTCC----
T ss_pred             HHHHHhc--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHHhcC----
Confidence            9998764  36789999999998765443322             222222222111123333    566776664    


Q ss_pred             CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc--CCCcceeeeccccc-cC
Q 011669          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH--GVVPDIVTMAKGIG-NG  329 (480)
Q Consensus       253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~--~~~pDivt~sK~~g-~G  329 (480)
                      .++++|++...+|++|.+. +++.+++|.++|++||+++|+||+|..|...| ....+...  +....+.+|||.++ .|
T Consensus       163 ~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~~~~G  240 (385)
T 1b5p_A          163 PRTKALVVNSPNNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAPEHTLTVNGAAKAFAMTG  240 (385)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCTTTEEEEEESTTTTTCGG
T ss_pred             CCCEEEEEeCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCCCCEEEEEechhhcCCcc
Confidence            2566666655567777664 77889999999999999999999999886654 33222222  22223448999999 79


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH---hhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV---IQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~---i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                      +|+||+++++++++.+.......+++.+++++.++.++|+.   ..+  ++..+++++..+++.+.|+++  ....  ..
T Consensus       241 ~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~--~~  316 (385)
T 1b5p_A          241 WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL--GLKA--VR  316 (385)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCB--CC
T ss_pred             cceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC--CCee--cC
Confidence            99999999999988876544456778889999998888863   221  234455555566666666554  2221  12


Q ss_pred             eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ...|+++++.+....       .....+.+.|.++||.+.+|..+  .+++||+..  .+++++++++++|.+++++
T Consensus       317 ~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~  384 (385)
T 1b5p_A          317 PSGAFYVLMDTSPIA-------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLGR  384 (385)
T ss_dssp             CSBTTEEEEECTTTC-------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC--
T ss_pred             CCeeEEEEEecCCCC-------CCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence            233556676663110       11456788888999999987554  378999954  7999999999999887653

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.97  E-value=4.5e-28  Score=244.62  Aligned_cols=321  Identities=17%  Similarity=0.092  Sum_probs=223.2

Q ss_pred             CCCHHHHHHHHHHHHhcccccccc--CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh-----------
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----------  181 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~~~--~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~-----------  181 (480)
                      ..+|++.+++.+++.........+  ..+...++++++++.++.+.++++|++||++|++.+++.++..           
T Consensus        41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~  120 (397)
T 3f9t_A           41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK  120 (397)
T ss_dssp             CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence            567999999999887642211222  2455678999999999877789999999999999999988764           


Q ss_pred             cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEc
Q 011669          182 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE  261 (480)
Q Consensus       182 ~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~e  261 (480)
                      ++++.|++.+++|++..........           .+..++...    .+..|    .+++++.++..   ++++|+++
T Consensus       121 ~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~i~~~---~~~~v~~~  178 (397)
T 3f9t_A          121 NEHPKIIVPITAHFSFEKGREMMDL-----------EYIYAPIKE----DYTID----EKFVKDAVEDY---DVDGIIGI  178 (397)
T ss_dssp             CSSCEEEEETTCCTHHHHHHHHHTC-----------EEEEECBCT----TSSBC----HHHHHHHHHHS---CCCEEEEE
T ss_pred             CCCeEEEECCcchhHHHHHHHHcCc-----------eeEEEeeCC----CCcCC----HHHHHHHHhhc---CCeEEEEE
Confidence            2478899999999885544433211           122232211    12123    67888888742   56788888


Q ss_pred             ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccc--cCC--------CcccccccCCCcceeeeccccccCcc
Q 011669          262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGS--------HFWGFEAHGVVPDIVTMAKGIGNGIP  331 (480)
Q Consensus       262 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr--~G~--------~~~~~~~~~~~pDivt~sK~~g~G~p  331 (480)
                      ++++++|.+.+    +++|.++|++||+++|+||+|+++..  ++.        ..+.+.. ++.+.+.+++|.+++|+|
T Consensus       179 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~  253 (397)
T 3f9t_A          179 AGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIP  253 (397)
T ss_dssp             BSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSS
T ss_pred             CCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCC
Confidence            88888998865    99999999999999999999987532  320        0233334 555566678899888899


Q ss_pred             ccccccCHH-HHHhhcC---CCc--------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          332 LGAVVTTPE-IAEVLTR---RNY--------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       332 ig~v~~~~~-~~~~l~~---~~~--------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      +|+++++++ +.+.+..   ...        +.+.+.+++++.++++.+....-++..++.+++.+++.+.|+++  .+.
T Consensus       254 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  331 (397)
T 3f9t_A          254 SGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFK  331 (397)
T ss_dssp             CEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred             ceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCE
Confidence            999988655 4444321   110        12223456666666666543333556777778888888888776  333


Q ss_pred             ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       400 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+.  .+.+.++++.+.        .   ...+.+.|.++||++.++.. .+++||+++..+|++++++++++|+++++
T Consensus       332 ~~~--~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~~~~-~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          332 PVI--EPILNIVAIEDE--------D---YKEVCKKLRDRGIYVSVCNC-VKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             BSS--CCSSSEEEEECT--------T---HHHHHHHHHHTTCBCEECSS-SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             EEc--CCCccEEEEEeC--------C---HHHHHHHHHhCCeEEeccCC-CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            222  244566666542        1   45788899999999988753 57999999988999999999999999875

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.97  E-value=1.8e-28  Score=251.25  Aligned_cols=310  Identities=14%  Similarity=0.108  Sum_probs=212.6

Q ss_pred             CChHHHHHHHHHHHhCCCCC---------CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC
Q 011669          139 LNHAIADFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~---------~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      ..+...++++.+.+..+...         ++|++|+|+++|++.+++.+..  +++.|++.+++|++........     
T Consensus        80 ~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~-----  152 (425)
T 2r2n_A           80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--PGDNVLLDEPAYSGTLQSLHPL-----  152 (425)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHGGG-----
T ss_pred             CHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHc-----
Confidence            34555666666665544332         5899999999999999997643  5689999999999876554332     


Q ss_pred             ccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC--------CCceEEEEEcc-cCCCCcceeCCCChHHHH
Q 011669          210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--------SGHVAGFLSES-IQGVGGIIELAPGYLPAV  280 (480)
Q Consensus       210 ~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--------~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l  280 (480)
                              |...+.+|...   .+.|    .++|+++++...        ..++++|+++| .+|++|.+ .+.+.+++|
T Consensus       153 --------g~~~~~v~~~~---~~~d----~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~-~~~~~l~~l  216 (425)
T 2r2n_A          153 --------GCNIINVASDE---SGIV----PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNS-LTSERKKEI  216 (425)
T ss_dssp             --------TCEEEEECEET---TEEC----HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCC-CCHHHHHHH
T ss_pred             --------CCEEEEeCcCC---CCCC----HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCc-CCHHHHHHH
Confidence                    22222222110   0112    578888886321        13577887765 67888876 478889999


Q ss_pred             HHHHHHhCCEEEEcccccCccccCCC---cccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCc
Q 011669          281 YKSIKKAGGLCIADEVQAGFARTGSH---FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGN  357 (480)
Q Consensus       281 ~~l~~~~gillI~DEv~tgfgr~G~~---~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~  357 (480)
                      .++|++||+++|+||+|++|.+.|..   +..++..+....+.+|||.+++|+|+||+++++++++.+.......+++.|
T Consensus       217 ~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~  296 (425)
T 2r2n_A          217 YELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPS  296 (425)
T ss_dssp             HHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSC
T ss_pred             HHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999988776622   222333344455678999999999999999999999888765556678899


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHhHHh-cCce-e-eEeccceeEEEEEecCCCcCCCCHHHHHH
Q 011669          358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSY---LKERLTALKDK-YGII-G-DVRGRGFLLGVEFVTDRQLKTPAKAETLY  431 (480)
Q Consensus       358 ~~~~aaa~a~L~~i~~~~~~~~~~~~~~~---l~~~L~~l~~~-~~~~-~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~  431 (480)
                      +++++++.++|+.+.++.+.++++++.++   .++.|.+..++ ++.+ . ..+..|+++|+++.....     .  ...
T Consensus       297 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~-----~--~~~  369 (425)
T 2r2n_A          297 TFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIND-----V--KEL  369 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSC-----C--HHH
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCC-----H--HHH
Confidence            99999999999865433333333333332   23333333333 3322 2 234568888998843211     0  123


Q ss_pred             HHHHHHHcCceeeccCcC-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          432 IMDKMKEMGVLVGKGGFY-------GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       432 ~~~~l~~~Gv~v~~~~~~-------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.+.|.++||++.++..+       .+++||+++. .+++++++++++|++++++
T Consensus       370 ~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~  423 (425)
T 2r2n_A          370 IEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE  423 (425)
T ss_dssp             HHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence            567788999999987543       3689999763 6999999999999998865

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.96  E-value=1.8e-29  Score=253.20  Aligned_cols=333  Identities=15%  Similarity=0.100  Sum_probs=232.6

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-------ccccccCChHHHHHHHH-HHHhCCCCCCEEEEeCCHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-------HSTVLYLNHAIADFAEA-LASKMPGNLKVVFFTNSGTE  169 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-------~~~~~~~~~~~~~l~e~-L~~~~~~~~~~v~f~~sGse  169 (480)
                      +-.|||+.+     +.++.+|+|.+|+.+++....       +....+..+...+++++ |+++++.+  .++|++||++
T Consensus         8 ~~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~   80 (371)
T 2e7j_A            8 DFINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGARE   80 (371)
T ss_dssp             CCEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHH
T ss_pred             CcEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHH
Confidence            346777633     235788999999999887642       11223456778899999 99999765  8999999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      |++.+++.+.  .++++|++.+++||+....... .            |...+.+|.+....+.-|    .+++++.+++
T Consensus        81 a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~-~------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~~  141 (371)
T 2e7j_A           81 AKFAVMHSLA--KKDAWVVMDENCHYSSYVAAER-A------------GLNIALVPKTDYPDYAIT----PENFAQTIEE  141 (371)
T ss_dssp             HHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHH-T------------TCEEEEECCCCTTTCCCC----HHHHHHHHHH
T ss_pred             HHHHHHHHHh--CCCCEEEEccCcchHHHHHHHH-c------------CCeEEEeecccCCCCCcC----HHHHHHHHHh
Confidence            9999999874  3678999999999987766322 1            222222221011112223    6778888864


Q ss_pred             cCC-CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eecccc
Q 011669          250 GTS-GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGI  326 (480)
Q Consensus       250 ~~~-~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~  326 (480)
                      ... +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.+ ..+   +....++  +|++  +++|++
T Consensus       142 ~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~---~~~~~~~--~di~~~s~sK~~  211 (371)
T 2e7j_A          142 TKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP---VSLKEIG--ADFIVGSGHKSM  211 (371)
T ss_dssp             HTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC---CCHHHHT--CSEEEEEHHHHS
T ss_pred             hcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC---CChhhcC--CCEEEecCCcCC
Confidence            211 47889999999999998876    899999999999999999999853 222   1222333  5655  578999


Q ss_pred             ccCccccccccCHHHHHh-hcCCCc--cc-----cCCCcHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHhHH
Q 011669          327 GNGIPLGAVVTTPEIAEV-LTRRNY--FN-----TFGGNPVCTAAGHAVLKVIQKDKLQNNA--HVVGSYLKERLTALKD  396 (480)
Q Consensus       327 g~G~pig~v~~~~~~~~~-l~~~~~--~~-----t~~~~~~~~aaa~a~L~~i~~~~~~~~~--~~~~~~l~~~L~~l~~  396 (480)
                      ++|.|+|++++++++++. +.....  ..     ++..++..++++.++++.+.+ ++.+++  +++.+++.+.|+++  
T Consensus       212 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~--  288 (371)
T 2e7j_A          212 AASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL--  288 (371)
T ss_dssp             SCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT--
T ss_pred             CCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc--
Confidence            988899999999998777 665433  22     556778888888888887765 666777  88888888888775  


Q ss_pred             hcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc-------CcCCCEEE-EeCCCC-CCHHHHH
Q 011669          397 KYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG-------GFYGNVFR-ITPPLC-FTKEDAD  467 (480)
Q Consensus       397 ~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------~~~~~~iR-i~p~~~-~t~~~id  467 (480)
                      .+..+....+.+.++++.+.           ....+.+.|.++||.+.+.       +...+++| |+++.. +++++++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~  357 (371)
T 2e7j_A          289 GIKQLGDNPHNHDLMFFHAE-----------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVD  357 (371)
T ss_dssp             TCEEESSSSCCSSEEEEECH-----------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHH
T ss_pred             CcEEecCCCccCceEEEECC-----------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHH
Confidence            22222111114678888762           2466888888999998761       11146899 998877 8999999


Q ss_pred             HHHHHHHHHHhhC
Q 011669          468 YLVDVMDYSLSKM  480 (480)
Q Consensus       468 ~~l~~l~~~l~~~  480 (480)
                      +++++|+++++++
T Consensus       358 ~~~~~l~~~~~~~  370 (371)
T 2e7j_A          358 YVLNAFKEIIEKY  370 (371)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998763

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.96  E-value=9.7e-30  Score=260.27  Aligned_cols=344  Identities=13%  Similarity=0.027  Sum_probs=232.9

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHH--HHHHhcccccccc--CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHH--HH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIV--NQIKRIQHSTVLY--LNHAIADFAEALASKMPGNLKVVFFTNSGTEANE--LA  174 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~--~~~~~~~~~~~~~--~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~--~A  174 (480)
                      .|||..|.+...+.+.+|.|.+++.  +.+. .......|  ......+|+++|+++++.+.++|++|+|+++|+.  .+
T Consensus        27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~  105 (423)
T 3ez1_A           27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL  105 (423)
T ss_dssp             CEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred             eEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence            4788877776444455667888875  3333 11112334  2455789999999999877789999999999997  78


Q ss_pred             HHHHHhh-cC--------CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHH
Q 011669          175 IMMARLY-TG--------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD  245 (480)
Q Consensus       175 lk~ar~~-~~--------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~  245 (480)
                      ++..... .+        ++.|++.+++|++.........             ...+.+|....   +.|    .++|++
T Consensus       106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~---g~d----~~~l~~  165 (423)
T 3ez1_A          106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLG-------------FELLTVDMQSD---GPD----VDAVER  165 (423)
T ss_dssp             HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHT-------------CEEEEEEEETT---EEC----HHHHHH
T ss_pred             HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcC-------------CEEEeccCCCC---CCC----HHHHHH
Confidence            8765542 33        5899999999998776544332             11121111100   012    678888


Q ss_pred             HHHccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHH-HHhCCEEEEcccccCccccC---C---Ccccc----ccc
Q 011669          246 LIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFARTG---S---HFWGF----EAH  313 (480)
Q Consensus       246 ~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~-~~~gillI~DEv~tgfgr~G---~---~~~~~----~~~  313 (480)
                      ++++  ..++++|+++| .+|++|.+. +.+.+++|.++| ++||+++|+||+|..+...+   .   .++.+    +..
T Consensus       166 ~l~~--~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (423)
T 3ez1_A          166 LAGT--DPSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYP  242 (423)
T ss_dssp             HHHS--CTTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCT
T ss_pred             HHhh--CCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCC
Confidence            8852  23788998886 677788775 677799999999 99999999999998533222   0   11111    123


Q ss_pred             CCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHH
Q 011669          314 GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHV-------VGSY  386 (480)
Q Consensus       314 ~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~-------~~~~  386 (480)
                      +....+.||||.+.+|+|+||+++++++++.+.......+++.+++++.++.++|+.+ .+.+.+++++       ..+.
T Consensus       243 ~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~  321 (423)
T 3ez1_A          243 DRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEY-PGGLEGLMRDHAAIIAPKFRA  321 (423)
T ss_dssp             TSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHH
Confidence            4445577999997789999999999999988877666678889999999999888741 0222222322       3333


Q ss_pred             HHHHHHHhHHhcC-cee-eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-c-------CCCEEEEe
Q 011669          387 LKERLTALKDKYG-IIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-F-------YGNVFRIT  456 (480)
Q Consensus       387 l~~~L~~l~~~~~-~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~-------~~~~iRi~  456 (480)
                      +.+.|.+.....+ .+. .....|+++|+++...         ....+.+.|.++||++.+++ .       ..+++||+
T Consensus       322 l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis  392 (423)
T 3ez1_A          322 VDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP---------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLA  392 (423)
T ss_dssp             HHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS---------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEEC
T ss_pred             HHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC---------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEE
Confidence            3333333222222 122 2345688899988432         14567888999999999832 2       24789999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhh
Q 011669          457 PPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       457 p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++.. +++++++++++|.+++++
T Consensus       393 ~~~~-~~~~i~~~~~~l~~~l~~  414 (423)
T 3ez1_A          393 PTRP-PVEEVRTAMQVVAACIRL  414 (423)
T ss_dssp             CSSS-CHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-CHHHHHHHHHHHHHHHHH
Confidence            8755 999999999999998864

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.96  E-value=6.3e-29  Score=255.01  Aligned_cols=344  Identities=13%  Similarity=0.085  Sum_probs=227.4

Q ss_pred             eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--cccccC-ChHHHHHHHHHHHhC----CCCCCEEEEeCCH
Q 011669           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYL-NHAIADFAEALASKM----PGNLKVVFFTNSG  167 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--~~~~~~-~~~~~~l~e~L~~~~----~~~~~~v~f~~sG  167 (480)
                      +.+|+.+|||..|.+..   ..+|.|.+|+.+++.+...  ....|. .....+|++++++++    +.+.++|+|++|+
T Consensus        52 ~~~~~~~i~l~~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~  128 (432)
T 3ei9_A           52 KYPDAQVISLGIGDTTE---PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA  128 (432)
T ss_dssp             HCTTCCCEECSSCCCCS---CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred             cCCCCCeEEccCCCCCC---CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCCh
Confidence            44578999999987653   6789999999999986532  112232 334567777777764    5567789999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc-CCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      ++++..+..++   .+++.|++.+++|++....+........+..... ...+..++...  ...+..       ++++ 
T Consensus       129 ~~al~~l~~l~---~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~l~~-  195 (432)
T 3ei9_A          129 KCDISRLQVMF---GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTP--ENGFFP-------DLST-  195 (432)
T ss_dssp             HHHHHHHHHHH---CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCG--GGTTSC-------CGGG-
T ss_pred             HHHHHHHHHHc---CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCc--ccCCcC-------Chhh-
Confidence            99998743322   3678999999999998776654433221110000 01222232211  111111       1221 


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc----CCCcceeee
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTM  322 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~----~~~pDivt~  322 (480)
                           ..++++|+++..+|++|.+. +.+.+++|.++|++||+++|+||+|++|...+ ...++...    +....+.||
T Consensus       196 -----~~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~  268 (432)
T 3ei9_A          196 -----VGRTDIIFFCSPNNPTGAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETASF  268 (432)
T ss_dssp             -----CCCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS-CCSSGGGSTTGGGTEEEEEES
T ss_pred             -----CCCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCC-CCCChhhcCCCCCeEEEEecc
Confidence                 12566677667788888764 77789999999999999999999999886655 33232221    233446689


Q ss_pred             ccccc-cCccccccccCHHH--------HHhhcCCCccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH
Q 011669          323 AKGIG-NGIPLGAVVTTPEI--------AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKER  390 (480)
Q Consensus       323 sK~~g-~G~pig~v~~~~~~--------~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~  390 (480)
                      ||.+| +|+|+||+++++++        ++.+.......+++.++++++++.++|+....   ++..++++++.+++++.
T Consensus       269 SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  348 (432)
T 3ei9_A          269 SNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDT  348 (432)
T ss_dssp             HHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 89999999999887        55555433345566889999998888752111   33455556666666666


Q ss_pred             HHHhHHhcCceeeEe-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCCCCHH
Q 011669          391 LTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLCFTKE  464 (480)
Q Consensus       391 L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~~  464 (480)
                      |+++    ++ .... ..|.++|+.+...         ....+.+.|++ .||++.++..+    .+++||+  +..+++
T Consensus       349 L~~~----g~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e  412 (432)
T 3ei9_A          349 FTSL----GY-DVYGGKNAPYVWVHFPNQ---------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRE  412 (432)
T ss_dssp             HHHT----TC-CEEECSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHH
T ss_pred             HHHC----Cc-eecCCCcceEEEEECCCC---------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHH
Confidence            6554    32 2233 3577888887411         13456666655 59999987443    4789999  577999


Q ss_pred             HHHHHHHHHHHHH
Q 011669          465 DADYLVDVMDYSL  477 (480)
Q Consensus       465 ~id~~l~~l~~~l  477 (480)
                      ++++++++|++--
T Consensus       413 ~l~~~l~rl~~~~  425 (432)
T 3ei9_A          413 NILEACRRFKQLY  425 (432)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998753

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.96  E-value=5e-28  Score=243.83  Aligned_cols=329  Identities=16%  Similarity=0.119  Sum_probs=231.6

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~  177 (480)
                      +.|+|..+      -++.+|+|.+|+.+++..  +... ...+...++++++++.++.+ .+++++++||++|++.+++.
T Consensus        20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~   90 (386)
T 2dr1_A           20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HRSK-EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN   90 (386)
T ss_dssp             CSEECCSS------SCCCCHHHHHHTTSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred             cceeecCC------CcCCcHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence            46777643      246789999998776542  1111 12466788999999988765 56799999999999999997


Q ss_pred             HHhhcCCceEEEEcCCcccc--cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669          178 ARLYTGCNDIISLRNAYHGN--AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (480)
Q Consensus       178 ar~~~~~~~ii~~~~~yhG~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (480)
                      +.  .++++|++.+++||+.  ...+.. .            |...+.++...  .+..|    .++|++.+++  .+++
T Consensus        91 l~--~~gd~vl~~~~~~~~~~~~~~~~~-~------------g~~~~~v~~~~--~~~~d----~~~l~~~l~~--~~~~  147 (386)
T 2dr1_A           91 GV--SKGGKVLVTIIGAFGKRYKEVVES-N------------GRKAVVLEYEP--GKAVK----PEDLDDALRK--NPDV  147 (386)
T ss_dssp             HS--CTTCEEEEEESSHHHHHHHHHHHH-T------------TCEEEEEECCT--TCCCC----HHHHHHHHHH--CTTC
T ss_pred             hh--cCCCeEEEEcCCchhHHHHHHHHH-h------------CCceEEEecCC--CCCCC----HHHHHHHHhc--CCCC
Confidence            63  3678999999999983  222111 1            22222222111  12234    6788888853  1367


Q ss_pred             EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--ccccccCcccc
Q 011669          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLG  333 (480)
Q Consensus       256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g~G~pig  333 (480)
                      ++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.+ ...   +....  ..+|++++  +|.++++.++|
T Consensus       148 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~~---~~~~~--~~~di~~~s~sK~~~~~~g~G  217 (386)
T 2dr1_A          148 EAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG-GAD---IKFDK--WGLDVVFSSSQKAFGVPPGLA  217 (386)
T ss_dssp             CEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT-TBC---CCTTT--TTCSEEEEETTSTTCCCSSCE
T ss_pred             cEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc-Ccc---ccccc--cCCcEEEEeccccccCCCceE
Confidence            89999999999998865    999999999999999999999743 221   22222  24577755  59999766699


Q ss_pred             ccccCHHHHHhhcCC------------------CccccCCCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHH
Q 011669          334 AVVTTPEIAEVLTRR------------------NYFNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERL  391 (480)
Q Consensus       334 ~v~~~~~~~~~l~~~------------------~~~~t~~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L  391 (480)
                      ++++++++++.+...                  ....+++.|+++++++.++|+.+.++    +..++.+++.+++.+.|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L  297 (386)
T 2dr1_A          218 IGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGV  297 (386)
T ss_dssp             EEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            999999988876421                  12345678899999999999877543    56777888888888888


Q ss_pred             HHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHH
Q 011669          392 TALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADY  468 (480)
Q Consensus       392 ~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~  468 (480)
                      +++  .+...... ...+.++++.+...        .....+.+.|.++||.+.++..  ..+++||+++..+|++++++
T Consensus       298 ~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~  367 (386)
T 2dr1_A          298 REI--GLDILAEPGHESPTITAVLTPPG--------IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQE  367 (386)
T ss_dssp             HHT--TCCBSSCTTCBCSSEEEEECCTT--------CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHH
T ss_pred             HHc--CCeeCcCccccCCceEEEEcCCC--------CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHH
Confidence            775  33322110 01467778876321        1146688889999999988642  24789999988899999999


Q ss_pred             HHHHHHHHHhh
Q 011669          469 LVDVMDYSLSK  479 (480)
Q Consensus       469 ~l~~l~~~l~~  479 (480)
                      ++++|++++++
T Consensus       368 ~~~~l~~~~~~  378 (386)
T 2dr1_A          368 MLDNLREVINE  378 (386)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.96  E-value=1.5e-27  Score=243.06  Aligned_cols=337  Identities=14%  Similarity=0.117  Sum_probs=231.8

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc---c-cccccC---ChHHHHHHHHHHHhCCC-CCCEEEEeCCH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---H-STVLYL---NHAIADFAEALASKMPG-NLKVVFFTNSG  167 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~-~~~~~~---~~~~~~l~e~L~~~~~~-~~~~v~f~~sG  167 (480)
                      .+|+.+++|..+..    ++.+|.|.+++.+++.+..   | ....|.   .+...+++++|+++++. +.+++++++||
T Consensus        24 ~~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~   99 (420)
T 1t3i_A           24 INGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA   99 (420)
T ss_dssp             ETTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred             cCCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence            36777888876654    3788999999999988742   1 111222   35678999999999976 56789999999


Q ss_pred             HHHHHHHHHHHHh--hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHH
Q 011669          168 TEANELAIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD  245 (480)
Q Consensus       168 seA~~~Alk~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~  245 (480)
                      ++|++.+++.++.  ..++++|++.+++||+...........         .|...+.+|..  ..+..|    .+++++
T Consensus       100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~--~~~~~d----~~~l~~  164 (420)
T 1t3i_A          100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAK---------TGAVLKFVQLD--EQESFD----LEHFKT  164 (420)
T ss_dssp             HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHH---------HCCEEEEECBC--TTSSBC----HHHHHH
T ss_pred             HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHh---------cCcEEEEeccC--CCCCcC----HHHHHH
Confidence            9999999998731  346789999999999854221111000         01222222211  112223    577887


Q ss_pred             HHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--c
Q 011669          246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--A  323 (480)
Q Consensus       246 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--s  323 (480)
                      .++    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...   +.....+  +|++++  +
T Consensus       165 ~l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~--~di~~~s~s  230 (420)
T 1t3i_A          165 LLS----EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP---LDVQLID--CDWLVASGH  230 (420)
T ss_dssp             HCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHHT--CSEEEEEGG
T ss_pred             hhC----CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc---CchhhcC--CCEEEEehh
Confidence            774    36899999999999998876    9999999999999999999997 33221   1222233  677755  5


Q ss_pred             cccccCccccccccCHHHHHhhcCCCcc--------------------ccCCCcHHHHHHHHH-HHHHhhh---hHHHHH
Q 011669          324 KGIGNGIPLGAVVTTPEIAEVLTRRNYF--------------------NTFGGNPVCTAAGHA-VLKVIQK---DKLQNN  379 (480)
Q Consensus       324 K~~g~G~pig~v~~~~~~~~~l~~~~~~--------------------~t~~~~~~~~aaa~a-~L~~i~~---~~~~~~  379 (480)
                      |.++. .++|++++++++++.+......                    .+.+.+++.++++++ +++.+.+   +++.++
T Consensus       231 K~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  309 (420)
T 1t3i_A          231 KMCAP-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNY  309 (420)
T ss_dssp             GTTSC-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             hhcCC-CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            96653 3389999999999888654321                    123466676666665 6777654   456667


Q ss_pred             HHHHHHHHHHHHHHhHHhcCceeeEe------ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----
Q 011669          380 AHVVGSYLKERLTALKDKYGIIGDVR------GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----  448 (480)
Q Consensus       380 ~~~~~~~l~~~L~~l~~~~~~~~~v~------g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----  448 (480)
                      .+++.+++.+.|+++    +.+..+.      +.|.++++.+..      .   ....+.+.|.++||.+.++..     
T Consensus       310 ~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~l~~~gi~v~~~~~~~~~~  376 (420)
T 1t3i_A          310 EVELTHYLWQGLGQI----PQLRLYGPNPKHGDRAALASFNVAG------L---HASDVATMVDQDGIAIRSGHHCTQPL  376 (420)
T ss_dssp             HHHHHHHHHHHHHTC----TTEEEESCCGGGSCBCSEEEEEETT------B---CHHHHHHHHHTTTEECBCSCTTCHHH
T ss_pred             HHHHHHHHHHHHHhC----CCeEEeCCCccccccCCEEEEEECC------C---CHHHHHHHHHHCCeEEeeccccchHH
Confidence            777777777777664    2222222      247777777621      0   135677888999999988721     


Q ss_pred             ---C--CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          449 ---Y--GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       449 ---~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                         +  .+++||+++..++++++++++++|++++++
T Consensus       377 ~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  412 (420)
T 1t3i_A          377 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF  412 (420)
T ss_dssp             HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence               1  468999999888999999999999998765

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.96  E-value=3e-28  Score=246.49  Aligned_cols=328  Identities=17%  Similarity=0.126  Sum_probs=229.6

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC-EEEEeCCHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAI  175 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~-~v~f~~sGseA~~~Al  175 (480)
                      +.+.|+|..+.      ++.+|+|.+|+.+++..  +.. ....+...++++++++.++.+.+ +++|++||++|++.++
T Consensus        32 ~~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~  102 (393)
T 1vjo_A           32 VPSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLD-PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATI  102 (393)
T ss_dssp             CCCCEECSSSC------CCCCHHHHHHHSSCCCC--TTS-HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred             CccceeccCCC------CCCCHHHHHHHhccccc--ccC-HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHH
Confidence            34678885432      47889999999876543  111 11235678899999999877667 8999999999999999


Q ss_pred             HHHHhhcCCceEEEEcCCccc--ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          176 MMARLYTGCNDIISLRNAYHG--NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG--~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      +.+.  .++++|++.+++||+  +.......             |...+.+|...  .+..|    .++|++.++..   
T Consensus       103 ~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~l~~~---  158 (393)
T 1vjo_A          103 ANAV--EPGDVVLIGVAGYFGNRLVDMAGRY-------------GADVRTISKPW--GEVFS----LEELRTALETH---  158 (393)
T ss_dssp             HHHC--CTTCEEEEEESSHHHHHHHHHHHHT-------------TCEEEEEECCT--TCCCC----HHHHHHHHHHH---
T ss_pred             Hhcc--CCCCEEEEEcCChhHHHHHHHHHHc-------------CCceEEEecCC--CCCCC----HHHHHHHHhhC---
Confidence            9874  367899999999998  33221111             22222222111  12233    67888888632   


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--ccccccCcc
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIP  331 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g~G~p  331 (480)
                      ++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...     .+.....+|++++  +|+++++.|
T Consensus       159 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~-----~~~~~~~~di~~~s~sK~l~~~~~  228 (393)
T 1vjo_A          159 RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP-----IFLDAWGVDLAYSCSQKGLGCSPG  228 (393)
T ss_dssp             CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC-----CCTTTTTCSEEECCSSSTTCSCSS
T ss_pred             CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC-----CcccccCccEEEEcCcccccCCCc
Confidence            5678899999999998875    8899999999999999999998 66432     2222345787755  599987569


Q ss_pred             ccccccCHHHHHhhcCC-----Cc--------------cccC-CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHH
Q 011669          332 LGAVVTTPEIAEVLTRR-----NY--------------FNTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLK  388 (480)
Q Consensus       332 ig~v~~~~~~~~~l~~~-----~~--------------~~t~-~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~  388 (480)
                      +|++++++++++.+...     ..              ..++ +.|+++++++.++|+.+.+   ++..++++++.+++.
T Consensus       229 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  308 (393)
T 1vjo_A          229 ASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLW  308 (393)
T ss_dssp             CEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999999998877321     00              2234 6788999999999987644   356777888888888


Q ss_pred             HHHHHhHHhcCceeeEec--cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC--CCEEEEeC-CCCCC
Q 011669          389 ERLTALKDKYGIIGDVRG--RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY--GNVFRITP-PLCFT  462 (480)
Q Consensus       389 ~~L~~l~~~~~~~~~v~g--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~p-~~~~t  462 (480)
                      +.|+++  .+.... ..+  .+.++++.+...        .....+.+.|.++ ||.+.++..+  .+++||++ ++..+
T Consensus       309 ~~L~~~--g~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~  377 (393)
T 1vjo_A          309 ERLEDI--GLSLHV-EKEYRLPTLTTVCIPDG--------VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSR  377 (393)
T ss_dssp             HHHHHT--TCCBSS-CGGGBCSSEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCS
T ss_pred             HHHHHc--CCcccC-CccccCCcEEEEEcCCC--------CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCCh
Confidence            888775  333222 111  234556655211        1145688888887 9999887532  57899994 56778


Q ss_pred             HHHHHHHHHHHHHHHh
Q 011669          463 KEDADYLVDVMDYSLS  478 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~  478 (480)
                      ++++++++++|+++++
T Consensus       378 ~~~i~~~~~~l~~~l~  393 (393)
T 1vjo_A          378 KESVDQLIPALEQVLR  393 (393)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            8899999999998864

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.96  E-value=8.7e-28  Score=241.73  Aligned_cols=331  Identities=16%  Similarity=0.138  Sum_probs=225.7

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-cccc-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~  173 (480)
                      .|||+.++      |+.+|+|.+|+.+++.+.. ....     ........+++++|+++++.+.+++++++||++|++.
T Consensus         3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~   76 (384)
T 1eg5_A            3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW   76 (384)
T ss_dssp             EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred             EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence            68887653      4789999999999987631 1110     1123556889999999997666789999999999999


Q ss_pred             HHHHHHh--hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          174 AIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       174 Alk~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      +++.++.  ..++++|++.+++||+.......+..          .|...+.+|...  .+..|    .++|++.++   
T Consensus        77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~---  137 (384)
T 1eg5_A           77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSM----------KGFKVKYVPVDS--RGVVK----LEELEKLVD---  137 (384)
T ss_dssp             HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHH----------TTCEEEECCBCT--TSCBC----HHHHHHHCC---
T ss_pred             HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHh----------cCCEEEEEccCC--CCccC----HHHHHHHhC---
Confidence            9998763  13678999999999987554422111          022222222211  12123    577877774   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC--CEEEEcccccCccccCCCcccccccCCCcceeeec--cccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG--GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g--illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g  327 (480)
                       +++++|+++++++++|.+.+    +++|.++|++||  +++|+||+|+ ||...   +.+.  ...+|++++|  |.+|
T Consensus       138 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~---~~~~--~~~~di~~~s~sK~~g  206 (384)
T 1eg5_A          138 -EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP---FSLE--KLEVDYASFSAHKFHG  206 (384)
T ss_dssp             -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC---CCCT--TTCCSEEEEEGGGGTS
T ss_pred             -CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc---cCch--hcCCCEEEecHHHhcC
Confidence             36889999999999998876    899999999999  9999999997 65432   2222  2247877655  9876


Q ss_pred             c-CccccccccCHHH--HHhhcCC---CccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          328 N-GIPLGAVVTTPEI--AEVLTRR---NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       328 ~-G~pig~v~~~~~~--~~~l~~~---~~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      . |  +|++++++++  ...+...   ....+++.|+++++++.++|+.+.+  ++..++.+++.+++.+.|++.  .+.
T Consensus       207 ~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  282 (384)
T 1eg5_A          207 PKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL--GAH  282 (384)
T ss_dssp             CTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT--TCE
T ss_pred             CCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC--CeE
Confidence            3 5  7999999876  2222221   1124567889999999999987543  356666777777777777652  121


Q ss_pred             ceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---------------------CCEEEEeC
Q 011669          400 IIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---------------------GNVFRITP  457 (480)
Q Consensus       400 ~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi~p  457 (480)
                      .+....+ .+.++++.+...         ....+.+.|.++||.+.++..+                     .+++||++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  353 (384)
T 1eg5_A          283 IITPLEISLPNTLSVSFPNI---------RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISL  353 (384)
T ss_dssp             ECSCTTSBCTTEEEEECTTC---------CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEEC
T ss_pred             EeCCcccCCCCEEEEEeCCC---------CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEEC
Confidence            1111111 245566655311         1356788889999999885322                     36899998


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Q 011669          458 PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +..+|++|+++++++|++++++
T Consensus       354 ~~~~~~~~i~~~~~~l~~~~~~  375 (384)
T 1eg5_A          354 CKYNTEEEVDYFLKKIEEILSF  375 (384)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            8888999999999999998875

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.96  E-value=2.7e-29  Score=257.12  Aligned_cols=343  Identities=13%  Similarity=0.070  Sum_probs=229.4

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHH-hccccccccCCh-HHHHHHHHHHHhCCCCCCEEEEeCCHHHHH--HHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQHSTVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEAN--ELAIM  176 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~-~~~~~~~~~~~~-~~~~l~e~L~~~~~~~~~~v~f~~sGseA~--~~Alk  176 (480)
                      +|||..|.+...+-..+|.+.+++.+++. ........|... ...+|++.++++++.+.++|++|+|+++++  ..+++
T Consensus        34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~  113 (422)
T 3d6k_A           34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW  113 (422)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred             eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence            68988887642111345678887765431 111112234433 378899999999887778999999999998  56666


Q ss_pred             HHHhh--cC--------CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          177 MARLY--TG--------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       177 ~ar~~--~~--------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      .....  .|        ++.|++.+++|+++........             ...+.+|....+   .|    .+++++.
T Consensus       114 ~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~g---~d----~~~l~~~  173 (422)
T 3d6k_A          114 SYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFG-------------FEMINVPMTDEG---PD----MGVVREL  173 (422)
T ss_dssp             HHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHT-------------CEEEEEEEETTE---EC----HHHHHHH
T ss_pred             HhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcC-------------CEEEecCCCCCC---CC----HHHHHHH
Confidence            55431  01        3369999999998876554332             112221111000   12    6778888


Q ss_pred             HHccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHHH-HhCCEEEEcccccC--ccccCCCcccc-------cccCC
Q 011669          247 IDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIK-KAGGLCIADEVQAG--FARTGSHFWGF-------EAHGV  315 (480)
Q Consensus       247 i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~-~~gillI~DEv~tg--fgr~G~~~~~~-------~~~~~  315 (480)
                      ++.   .++++|++.| .+|++|.+ .+.+++++|.++|+ +||+++|+||+|..  |+..|.....+       +..+.
T Consensus       174 l~~---~~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (422)
T 3d6k_A          174 VKD---PQVKGMWTVPVFGNPTGVT-FSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNR  249 (422)
T ss_dssp             HTS---TTEEEEEECCSSCTTTCCC-CCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTC
T ss_pred             Hhc---CCCeEEEEcCCCCCCCCCC-CCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCc
Confidence            752   3678888555 67778876 48888999999999 99999999999974  65544212122       23455


Q ss_pred             CcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHH
Q 011669          316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKL-------QNNAHVVGSYLK  388 (480)
Q Consensus       316 ~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~-------~~~~~~~~~~l~  388 (480)
                      .+++.+|||..++|+|+||+++++++++.+.......+++.|+++++++.++|+..  +.+       .+.+++..+++.
T Consensus       250 ~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~  327 (422)
T 3d6k_A          250 FWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDV--AGLKAHMLKHAASLAPKFERVL  327 (422)
T ss_dssp             EEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHHHHHHH
Confidence            66677999996689999999999999988876555567888999999998888631  222       223333444555


Q ss_pred             HHHHHhHHhcCceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-C-------CCEEEEeCCC
Q 011669          389 ERLTALKDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-Y-------GNVFRITPPL  459 (480)
Q Consensus       389 ~~L~~l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~-------~~~iRi~p~~  459 (480)
                      +.|.+....++.+.. ....|+++|+++...         ....+.+.|.++||++.+++. +       .+++||+++.
T Consensus       328 ~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~  398 (422)
T 3d6k_A          328 EILDSRLSEYGVAKWTSPTGGYFISVDVVPG---------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL  398 (422)
T ss_dssp             HHHHHHHGGGTCEEECCCSBSSCEEEEESTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS
T ss_pred             HHHHHhcCcCCceEEeCCCcceEEEEECCCC---------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC
Confidence            555443333333332 234578889988421         134577788999999998432 2       4789999776


Q ss_pred             CCCHHHHHHHHHHHHHHHhh
Q 011669          460 CFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       460 ~~t~~~id~~l~~l~~~l~~  479 (480)
                       .+++++++++++|++++++
T Consensus       399 -~~~e~i~~~~~~l~~~l~~  417 (422)
T 3d6k_A          399 -PPVAELEVAMDGFATCVLM  417 (422)
T ss_dssp             -SCHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHH
Confidence             8999999999999998764

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.96  E-value=2.4e-29  Score=257.85  Aligned_cols=345  Identities=14%  Similarity=0.076  Sum_probs=230.9

Q ss_pred             EEeccCCcccccCCCCCHHHHHHH--HHHHHhccccccccC-ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH--HHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSI--VNQIKRIQHSTVLYL-NHAIADFAEALASKMPGNLKVVFFTNSGTEAN--ELAI  175 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~--~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~--~~Al  175 (480)
                      .+||..|.+...+.+.++.+.+++  .+++.........|. .....+|+++|+++++.+.++|++|+|+++|+  +.++
T Consensus        35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~  114 (427)
T 3ppl_A           35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS  114 (427)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred             eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence            578888776554333334566665  444443222223344 34568899999999887778999999999999  5787


Q ss_pred             HHHHhhcC----------CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHH
Q 011669          176 MMARLYTG----------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD  245 (480)
Q Consensus       176 k~ar~~~~----------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~  245 (480)
                      +......+          ++.|++.+++|++.........             ...+.+|....+   .|    .++|++
T Consensus       115 ~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~g---~d----~~~l~~  174 (427)
T 3ppl_A          115 WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFG-------------FEMISVPMNEDG---PD----MDAVEE  174 (427)
T ss_dssp             HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT-------------CEEEEEEEETTE---EC----HHHHHH
T ss_pred             HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC-------------CEEEEeCCCCCC---CC----HHHHHH
Confidence            76554212          7899999999998765544332             222222211000   12    577888


Q ss_pred             HHHccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHH-HHhCCEEEEcccccCccccCCC-----cccc----cccC
Q 011669          246 LIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFARTGSH-----FWGF----EAHG  314 (480)
Q Consensus       246 ~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~-~~~gillI~DEv~tgfgr~G~~-----~~~~----~~~~  314 (480)
                      +++   ..++++|+++| .+|++|.+. +.+.+++|.++| ++||+++|+||+|+++.+.+..     ++..    +..+
T Consensus       175 ~l~---~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (427)
T 3ppl_A          175 LVK---NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPN  250 (427)
T ss_dssp             HTT---STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTT
T ss_pred             HHh---cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCC
Confidence            874   24788999886 677888775 677789999999 9999999999999985444311     1111    1335


Q ss_pred             CCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh---h--hHHHHHHHHHHHHHHH
Q 011669          315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---K--DKLQNNAHVVGSYLKE  389 (480)
Q Consensus       315 ~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~---~--~~~~~~~~~~~~~l~~  389 (480)
                      ..+++.||||.+++|+|+||+++++++++.+.......+++.+++++.++.+.|+...   +  ....+.+++..+.+.+
T Consensus       251 ~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  330 (427)
T 3ppl_A          251 RFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLE  330 (427)
T ss_dssp             SEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5566779999977899999999999999888766666788899999998888775311   0  1122233333344444


Q ss_pred             HHHHhHHhcCcee-eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-c-------CCCEEEEeCCCC
Q 011669          390 RLTALKDKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-F-------YGNVFRITPPLC  460 (480)
Q Consensus       390 ~L~~l~~~~~~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~-------~~~~iRi~p~~~  460 (480)
                      .|.+.....+.+. .....|+++|+++...         ....+.+.|.++||++.+++ .       ..+++||+++..
T Consensus       331 ~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~  401 (427)
T 3ppl_A          331 ILDSRLAEYGVAQWTVPAGGYFISLDVVPG---------TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP  401 (427)
T ss_dssp             HHHHHHGGGTCCEECCCSBSSCEEEECSTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS
T ss_pred             HHHHhcCCCCceEEeCCCccEEEEEECCcc---------hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC
Confidence            4433222222222 2334588888887431         14567788999999999843 1       247899998654


Q ss_pred             CCHHHHHHHHHHHHHHHhh
Q 011669          461 FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       461 ~t~~~id~~l~~l~~~l~~  479 (480)
                       ++++|++++++|.+++++
T Consensus       402 -~~~~i~~~~~~l~~~l~~  419 (427)
T 3ppl_A          402 -PVEELEVAMDGVATCVLL  419 (427)
T ss_dssp             -CHHHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHH
Confidence             999999999999998764

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.96  E-value=1.6e-28  Score=250.53  Aligned_cols=347  Identities=11%  Similarity=0.032  Sum_probs=218.0

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc------ccccccC-ChHHHHHHHHHHHhC------CCCCCEEEEeC
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ------HSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTN  165 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~------~~~~~~~-~~~~~~l~e~L~~~~------~~~~~~v~f~~  165 (480)
                      ..++||..|.+..     .|.+.+++.+++.+..      .....|. .....+|++++++++      +.+.++|+||+
T Consensus        31 ~~~i~l~~g~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~  105 (417)
T 3g7q_A           31 PGAIMLGGGNPAH-----IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTN  105 (417)
T ss_dssp             -CCEECSCCCCCC-----CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred             CCceEecCcCCCC-----CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeC
Confidence            4578888776542     3544455444443321      0011233 344667777777765      45678999999


Q ss_pred             CHHHHHHHHHHHHHhhc---CCceEEEE-cCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHH
Q 011669          166 SGTEANELAIMMARLYT---GCNDIISL-RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK  241 (480)
Q Consensus       166 sGseA~~~Alk~ar~~~---~~~~ii~~-~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~  241 (480)
                      ||+||++.+++.+....   ++.+|++. +++||++............       .+......+.. ...|..|    .+
T Consensus       106 G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~d----~~  173 (417)
T 3g7q_A          106 GSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS-------ARPNIELLPEG-QFKYHVD----FE  173 (417)
T ss_dssp             CHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEE-------CCCEEEEEGGG-EEEEECC----GG
T ss_pred             CcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhcc-------ccCcccccCCc-ccccccC----HH
Confidence            99999999999875421   11278886 9999998765533211000       01111111110 0001112    23


Q ss_pred             HHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc--cccCCCcce
Q 011669          242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF--EAHGVVPDI  319 (480)
Q Consensus       242 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~--~~~~~~pDi  319 (480)
                      +++  +    ..++++|+++..+|++|.+. +.+.+++|.++|++||+++|+||+|..+. .+..+...  ...+....+
T Consensus       174 ~l~--~----~~~~~~v~~~~p~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~  245 (417)
T 3g7q_A          174 HLH--I----GEETGMICVSRPTNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVPF-PGIIFSEARPLWNPNIILC  245 (417)
T ss_dssp             GCC--C----CTTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTTT-TCCBCSCCCCCCCTTEEEE
T ss_pred             Hhc--c----ccCceEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCcccc-ccccccccccCCCCCEEEE
Confidence            444  2    23678888887788888765 77779999999999999999999997531 12011111  112334446


Q ss_pred             eeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHh
Q 011669          320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD-----KLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       320 vt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~-----~~~~~~~~~~~~l~~~L~~l  394 (480)
                      .+|||...+|+|+||+++++++++.+....+..+++.++++++++.+.|+...-.     .+.+++++..+.+.+.|.+.
T Consensus       246 ~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (417)
T 3g7q_A          246 MSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRY  325 (417)
T ss_dssp             EESGGGTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             EechhccCCCcceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899954479999999999999998877666678888999999998888642211     13334445555555555543


Q ss_pred             HHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----------CCEEEEeCCCCCCH
Q 011669          395 KDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----------GNVFRITPPLCFTK  463 (480)
Q Consensus       395 ~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----------~~~iRi~p~~~~t~  463 (480)
                      ...+++.......|+++|+++....       .....+.+.|.++||++.++..+           .+++||+++.  ++
T Consensus       326 l~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~  396 (417)
T 3g7q_A          326 LSEERCLIHKPEGAIFLWLWFKDLP-------ITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EP  396 (417)
T ss_dssp             CCTTTCEEECCCBSSEEEEECTTCS-------SCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CH
T ss_pred             cccCCceeeCCCcceEEEEEcCCCC-------CCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CH
Confidence            2222222233456888888874311       11456888889999999987543           4689999874  99


Q ss_pred             HHHHHHHHHHHHHHhh
Q 011669          464 EDADYLVDVMDYSLSK  479 (480)
Q Consensus       464 ~~id~~l~~l~~~l~~  479 (480)
                      ++|++++++|.+++++
T Consensus       397 ~~i~~~~~~l~~~l~~  412 (417)
T 3g7q_A          397 DKIEAGVKILAEEIER  412 (417)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998864

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.96  E-value=1.6e-27  Score=242.87  Aligned_cols=331  Identities=14%  Similarity=0.073  Sum_probs=231.6

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-cccc--c---cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTV--L---YLNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~--~---~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA  170 (480)
                      +|..|||+.+      .|+.+|+|.+++.+++.+.. +...  .   ...+...+++++|+++++.+.++|+|++||+++
T Consensus        27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a  100 (416)
T 1qz9_A           27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN  100 (416)
T ss_dssp             TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred             CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence            5789999754      25789999999999987531 1111  1   113667899999999998766789999999999


Q ss_pred             HHHHHHHHHhh----cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          171 NELAIMMARLY----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       171 ~~~Alk~ar~~----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      ++.+++.++..    .+++++|++.+.+|+.....+...... .     ..|...+.+|.             .+++++.
T Consensus       101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~-~-----~~g~~~~~v~~-------------~~~l~~~  161 (416)
T 1qz9_A          101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADM-L-----QQGYTLRLVDS-------------PEELPQA  161 (416)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHH-H-----CSSCEEEEESS-------------GGGHHHH
T ss_pred             HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHH-h-----cCCceEEEeCc-------------HHHHHHH
Confidence            99999987533    455677777888887654432211000 0     00222222221             2467777


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--cc
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AK  324 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK  324 (480)
                      ++    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...   +....+  .+|++++  +|
T Consensus       162 i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d~~~~s~~K  227 (416)
T 1qz9_A          162 ID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP---VDLHQA--GADYAIGCTYK  227 (416)
T ss_dssp             CS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHH--TCSEEEECSSS
T ss_pred             hC----CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC---CChhhc--CCCEEEecCcc
Confidence            64    37889999999999998876    9999999999999999999997 54332   122222  3677765  59


Q ss_pred             ccccCccc-cccccCHHHHHhhcCCCcc-----------------------ccCCCcHHHHHHHHHHHHHhhh---hHHH
Q 011669          325 GIGNGIPL-GAVVTTPEIAEVLTRRNYF-----------------------NTFGGNPVCTAAGHAVLKVIQK---DKLQ  377 (480)
Q Consensus       325 ~~g~G~pi-g~v~~~~~~~~~l~~~~~~-----------------------~t~~~~~~~~aaa~a~L~~i~~---~~~~  377 (480)
                      .+++|.++ |++++++++++.+.....+                       ...+.|+.+++++.++|+.+.+   +++.
T Consensus       228 ~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~  307 (416)
T 1qz9_A          228 YLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR  307 (416)
T ss_dssp             TTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99888888 9999999987766542111                       1224578888888889988754   4577


Q ss_pred             HHHHHHHHHHHHHHHHhHH--hcCceeeE--eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEE
Q 011669          378 NNAHVVGSYLKERLTALKD--KYGIIGDV--RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVF  453 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~--~~~~~~~v--~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  453 (480)
                      ++.+++.+++++.|+++..  .+..+...  ...+.++++.+.        .   ...+.+.|.++||++...+  .+++
T Consensus       308 ~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~l~~~gi~~~~~~--~~~l  374 (416)
T 1qz9_A          308 RKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------E---GYAVIQALIDRGVIGDYRE--PRIM  374 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------T---HHHHHHHHHTTTEECEEET--TTEE
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------C---HHHHHHHHHhCCcEeccCC--CCeE
Confidence            8888888888888877532  22111111  023567777652        1   3568888999999986533  5789


Q ss_pred             EEeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669          454 RITPP-LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       454 Ri~p~-~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||+++ +.+|++|+++++++|++++++
T Consensus       375 Ris~~~~~~t~~~i~~~~~~l~~~~~~  401 (416)
T 1qz9_A          375 RFGFTPLYTTFTEVWDAVQILGEILDR  401 (416)
T ss_dssp             EEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence            99987 688999999999999998864

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.96  E-value=1.2e-27  Score=239.01  Aligned_cols=333  Identities=14%  Similarity=0.103  Sum_probs=227.9

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC--CCEEEEeCCHHHHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~--~~~v~f~~sGseA~~~Alk~  177 (480)
                      +++||..| +   + ..+|+|.+|+.+++   .|....+.++...+++++|+++++..  .++++|++||++|++.+++.
T Consensus         4 ~~~~~~~g-p---~-~~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~   75 (366)
T 1m32_A            4 NYLLLTPG-P---L-TTSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS   75 (366)
T ss_dssp             -CEECSSS-S---C-CCCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred             ccccccCC-C---c-CCCHHHHHHHhhhh---cCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence            36788777 2   2 27899999998743   23221122366788999999998622  24799999999999999997


Q ss_pred             HHhhcCCceEEEEcCCccccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          178 ARLYTGCNDIISLRNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       178 ar~~~~~~~ii~~~~~yhG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      ++.  ++++|+++++.||+.... .....+.          .+..++.+.    .+..|    .++++++++..  .+++
T Consensus        76 ~~~--~gd~vi~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~--~~~~  133 (366)
T 1m32_A           76 ALG--PQDKVLIVSNGAYGARMVEMAGLMGI----------AHHAYDCGE----VARPD----VQAIDAILNAD--PTIS  133 (366)
T ss_dssp             SCC--TTCCEEEEESSHHHHHHHHHHHHHTC----------CEEEEECCT----TSCCC----HHHHHHHHHHC--TTCC
T ss_pred             hcC--CCCeEEEEeCCCccHHHHHHHHHhCC----------ceEEEeCCC----CCCCC----HHHHHHHHhcC--CCeE
Confidence            753  567888888888875321 1111111          122232211    11133    67888888742  2466


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGA  334 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~  334 (480)
                      +|++...++++|.+.+    +++|.++|++||+++|+||+|+ ++..+   +....  ..+|++  +++|+++++.++|+
T Consensus       134 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~---~~~~~--~~~di~~~s~~K~~~~~~g~G~  203 (366)
T 1m32_A          134 HIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP---MDIAA--LHIDYLISSANKCIQGVPGFAF  203 (366)
T ss_dssp             EEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCTTT--TTCSEEEEESSSTTCCCSSEEE
T ss_pred             EEEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC---ccccc--cCccEEEecCcccccCCCceEE
Confidence            7767777778888876    9999999999999999999997 44332   12222  236766  57899987777899


Q ss_pred             cccCHHHHHhhcCCCc------------------cccCCCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHH
Q 011669          335 VVTTPEIAEVLTRRNY------------------FNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       335 v~~~~~~~~~l~~~~~------------------~~t~~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~  392 (480)
                      +++++++++.+.....                  ...++.|+.+++++.++|+.+.+.    ...++.+++.+++++.|+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~  283 (366)
T 1m32_A          204 VIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMR  283 (366)
T ss_dssp             EEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHH
Confidence            9999999887754310                  013577888898899999877543    466777778888888887


Q ss_pred             HhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-CCCEEEEeCCCCCCHHHHHHHH
Q 011669          393 ALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-YGNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       393 ~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~p~~~~t~~~id~~l  470 (480)
                      ++  .+..+... ...|.++++.+....      ......+.+.|.++||.+.++.. ..+++||+++..++++++++++
T Consensus       284 ~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~  355 (366)
T 1m32_A          284 AL--GFNTLLDDELHSPIITAFYSPEDP------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALL  355 (366)
T ss_dssp             HT--TCCBSSCGGGBCSSEEEEECCCCT------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHH
T ss_pred             HC--CCeeccCchhcCceEEEEEcCccC------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHH
Confidence            75  33322211 124567888773200      01246688889999999988743 3578999999889999999999


Q ss_pred             HHHHHHHhhC
Q 011669          471 DVMDYSLSKM  480 (480)
Q Consensus       471 ~~l~~~l~~~  480 (480)
                      ++|+++++++
T Consensus       356 ~~l~~~~~~~  365 (366)
T 1m32_A          356 TAIRTAMYWT  365 (366)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHHHHhc
Confidence            9999987653

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.96  E-value=1.7e-28  Score=252.56  Aligned_cols=351  Identities=12%  Similarity=0.075  Sum_probs=222.6

Q ss_pred             CEEE-eccCCcccccCCCCCHHHHHHHHHHHHhcccc-------c------cccC-ChHHHHHHHHHHHhC------CCC
Q 011669           99 RRYL-DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-------T------VLYL-NHAIADFAEALASKM------PGN  157 (480)
Q Consensus        99 ~~yl-D~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-------~------~~~~-~~~~~~l~e~L~~~~------~~~  157 (480)
                      ..+| ||..|.+..     .|.+.+++.+++.+....       .      ..|. .....+++++|++++      +.+
T Consensus        31 ~~~i~~l~~g~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~  105 (444)
T 3if2_A           31 DQPVNMLGGGNPAK-----IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT  105 (444)
T ss_dssp             SSCCEECSCCCCCC-----CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred             chhhhccCCCCCCc-----ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC
Confidence            3467 877765532     466666666655543211       1      1232 233556777776665      456


Q ss_pred             CCEEEEeCCHHHHHHHHHHHHHhhcCCc--------------eEEEE-cCCcccccccccccccCCCccccccCCCeeEe
Q 011669          158 LKVVFFTNSGTEANELAIMMARLYTGCN--------------DIISL-RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA  222 (480)
Q Consensus       158 ~~~v~f~~sGseA~~~Alk~ar~~~~~~--------------~ii~~-~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~  222 (480)
                      .++|+||+||++|++.+++.+..  +++              .||+. .++|+++.........       ....+...+
T Consensus       106 ~~~i~~t~G~t~al~~~~~~l~~--~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~-------~~~~~~~~~  176 (444)
T 3if2_A          106 SENIALTNGSQNAFFYLFNLFGG--AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQH-------FAAVLPHID  176 (444)
T ss_dssp             GGGEEEESSHHHHHHHHHHHSSE--EEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCC-------EEECCCEEE
T ss_pred             HHHEEEecCcHHHHHHHHHHHhC--CCccccccccccccccceEEEeCCCCccchhhcccccch-------hhccCceEE
Confidence            78899999999999999987643  222              46654 8999987765421110       000122222


Q ss_pred             cCCCCc-CC--CCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC
Q 011669          223 LNPDPY-RG--VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG  299 (480)
Q Consensus       223 ~~p~~~-~~--~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg  299 (480)
                      +++... .+  .|+.|    .++|+++++.. ..++++|+++..+|++|.+. +.+.+++|.++|++||+++|+||+|..
T Consensus       177 ~~~~~~~~g~~~~~~d----~~~l~~~l~~~-~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~  250 (444)
T 3if2_A          177 EVTHDGEEGFFKYRVD----FEALENLPALK-EGRIGAICCSRPTNPTGNVL-TDEEMAHLAEIAKRYDIPLIIDNAYGM  250 (444)
T ss_dssp             EEEETTEEEEEEEECC----HHHHHTCHHHH-TTCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred             ecccccccCccccCCC----HHHHHHHHHhc-CCCceEEEeCCCCCCCCCcC-CHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            222100 00  11123    56777664321 23677788776678888765 777899999999999999999999974


Q ss_pred             ccccCCCcccc--cccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh---
Q 011669          300 FARTGSHFWGF--EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD---  374 (480)
Q Consensus       300 fgr~G~~~~~~--~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~---  374 (480)
                      +. .+..+...  ...+...++.+|||...+|+|+||+++++++++.+....+..+++.++++++++.+.++.....   
T Consensus       251 ~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  329 (444)
T 3if2_A          251 PF-PNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLS  329 (444)
T ss_dssp             TT-TCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHH
T ss_pred             cc-cccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHH
Confidence            31 11011111  1234455677999985579999999999999988877666677888999999988888643211   


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---
Q 011669          375 --KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---  449 (480)
Q Consensus       375 --~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---  449 (480)
                        ...++++++.+.+++.|.+.....++.......|+++|+.+....       .....+.+.|.++||++.++..+   
T Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~~~~~  402 (444)
T 3if2_A          330 DNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP-------ISTLDLYERLKAKGTLIVPSEYFFPG  402 (444)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS-------SCHHHHHHHHHHTTEECEEGGGSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC-------CCHHHHHHHHHHCCeEEecchhhcCC
Confidence              123334444445555554432222222223456888898884311       11456788899999999987543   


Q ss_pred             ---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          450 ---------GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       450 ---------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                               .+++||+++.  ++++|++++++|.+++++
T Consensus       403 ~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~  439 (444)
T 3if2_A          403 VDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRE  439 (444)
T ss_dssp             CCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHH
Confidence                     1589999875  999999999999998864

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.96  E-value=4.1e-27  Score=232.95  Aligned_cols=318  Identities=15%  Similarity=0.103  Sum_probs=225.1

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      +.+++|||.++..  ++| .+|.|.+++.+++...    ..|+++...+++++|+++++.+.++|+|++|++++++.+++
T Consensus        14 ~~~~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~   86 (337)
T 3p1t_A           14 AAAQAVCLAFNEN--PEA-VEPRVQAAIAAAAARI----NRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA   86 (337)
T ss_dssp             CCCCCEECSSCCC--CSC-CCHHHHHHHHHHGGGT----TSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCCceEeeCCCC--CCC-CCHHHHHHHHHhhhhh----ccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence            4567899988764  455 6799999999877653    34567788999999999998777789999999999999998


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      .+    +++.|++.+++|++........             |+..+.+|...  .|+.|    .++++++      .+++
T Consensus        87 ~~----~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~------~~~~  137 (337)
T 3p1t_A           87 EF----SSMRFVTAWPGFDGYRARIAVS-------------GLRHFEIGLTD--DLLLD----PNDLAQV------SRDD  137 (337)
T ss_dssp             HS----TTSEEEEESSSCSHHHHHHTTS-------------CCEEEEECBCT--TSSBC----HHHHTTC------CTTE
T ss_pred             hc----CCCeEEEeCCCcHHHHHHHHHc-------------CCEEEEecCCC--CCCCC----HHHHHhh------cCCC
Confidence            65    6789999999998866543322             23333322111  12223    4455433      2456


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCcccccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAV  335 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v  335 (480)
                      ++++...++++|.+.+    ++++.++|+++++ +|+||+|.+|+..+ .. .....+....+.++||.+| .|+|+||+
T Consensus       138 ~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~-~~-~~~~~~~~i~~~S~sK~~g~~G~r~G~~  210 (337)
T 3p1t_A          138 CVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFR-AR-GLAYGENELVFRSFSKSYGLAGLRLGAL  210 (337)
T ss_dssp             EEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCS-SS-CCCCBTTEEEEEESSSTTCCTTTCCEEE
T ss_pred             EEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhcccc-cc-ccccCCCEEEEeeCchhccCcchheEEE
Confidence            7777777888998887    8899999999997 55699999887554 21 1122233334558999999 89999999


Q ss_pred             ccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       336 ~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                      ++++++++.+....  .+++.++++++++.++|+.... ++..+++.+..+++.+.|+++    + +....+.|.++++.
T Consensus       211 ~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~~~  283 (337)
T 3p1t_A          211 FGPSELIAAMKRKQ--WFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----G-YRVASSEANFVLVE  283 (337)
T ss_dssp             ECCHHHHHHHHTTS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CCBCCCSSSEEEEE
T ss_pred             EeCHHHHHHHHhhc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----c-CEECCCCCeEEEEE
Confidence            99999998887643  4567788888888888763211 233444444555555555543    3 23345667777776


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ...           ...+.+.|.++||.+.++..+  .+++||++.   +++++++++++|+++++
T Consensus       284 ~~~-----------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          284 NAA-----------GERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             CTT-----------THHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             cCC-----------HHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence            521           135677888999999987654  379999944   89999999999998764

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.96  E-value=1.6e-27  Score=243.45  Aligned_cols=333  Identities=14%  Similarity=0.100  Sum_probs=225.2

Q ss_pred             eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHH--hccc-c------ccccCChHHHHHHHHHHHhCCCCCCEEEEeC
Q 011669           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK--RIQH-S------TVLYLNHAIADFAEALASKMPGNLKVVFFTN  165 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~--~~~~-~------~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~  165 (480)
                      +.++..|||+.++      |+.+|+|.+++.+++.  +... .      ...+..+...+++++|++.++.+.++|+|++
T Consensus        19 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~   92 (423)
T 3lvm_A           19 AMKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTS   92 (423)
T ss_dssp             -CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEES
T ss_pred             ccCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            4567789997654      4789999999999887  3211 1      1112235668899999999987777899999


Q ss_pred             CHHHHHHHHHHHHHh-hc-CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHH
Q 011669          166 SGTEANELAIMMARL-YT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV  243 (480)
Q Consensus       166 sGseA~~~Alk~ar~-~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l  243 (480)
                      ||++|++.+++.+.. +. +++.|++.+++|++.......+..          .|+..+.+|...  .+..|    +++|
T Consensus        93 ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l  156 (423)
T 3lvm_A           93 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLER----------EGFEVTYLAPQR--NGIID----LKEL  156 (423)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHH----------TTCEEEEECCCT--TSCCC----HHHH
T ss_pred             ChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHH----------cCCEEEEeccCC--CCccC----HHHH
Confidence            999999999997653 23 478999999999987655433211          122222222211  11123    6778


Q ss_pred             HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec
Q 011669          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA  323 (480)
Q Consensus       244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s  323 (480)
                      ++.++    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|++ +..     ........+|++++|
T Consensus       157 ~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~-----~~~~~~~~~di~~~s  222 (423)
T 3lvm_A          157 EAAMR----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL-----PIDLSQLKVDLMSFS  222 (423)
T ss_dssp             HHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS-----CCCTTTSCCSEEEEE
T ss_pred             HHhcC----CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC-----CcChhhcCCCEEEec
Confidence            88775    37899999999999998876    99999999999999999999863 221     122233457887655


Q ss_pred             --cccccCccccccccCHHHHHhhcCCCc-------cccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHH
Q 011669          324 --KGIGNGIPLGAVVTTPEIAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       324 --K~~g~G~pig~v~~~~~~~~~l~~~~~-------~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~  392 (480)
                        |.+| +.++|++++++++++.+.....       ..+...++.+++++.++++.+.+  +++.++.+++.+++++.|+
T Consensus       223 ~sK~~g-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~  301 (423)
T 3lvm_A          223 GHKIYG-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK  301 (423)
T ss_dssp             STTTTS-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHhcC-CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              9654 4458999999887666654332       23445677888888888887655  4555666666666666664


Q ss_pred             HhHHhcCceeeEecc----ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-------------------
Q 011669          393 ALKDKYGIIGDVRGR----GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-------------------  449 (480)
Q Consensus       393 ~l~~~~~~~~~v~g~----g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------  449 (480)
                      +    ++.+......    +.++.+.+...         ....+.+.|.+  |.+.++..+                   
T Consensus       302 ~----~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~  366 (423)
T 3lvm_A          302 D----IEEVYLNGDLEHGAPNILNVSFNYV---------EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDE  366 (423)
T ss_dssp             T----STTEEEESCSTTBCTTEEEEEETTS---------CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHH
T ss_pred             c----CCCEEEeCCccccCCCeEEEEeCCC---------CHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCcc
Confidence            4    3333222222    34556655211         13456666665  777665211                   


Q ss_pred             --CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          450 --GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       450 --~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                        .+++||+++..+|++++++++++|++++++
T Consensus       367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~  398 (423)
T 3lvm_A          367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR  398 (423)
T ss_dssp             HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence              378999999999999999999999998764

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.96  E-value=1.8e-28  Score=250.79  Aligned_cols=339  Identities=16%  Similarity=0.064  Sum_probs=220.1

Q ss_pred             EEEeccCCcccccCCCCC--HHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhCCC------CCC--EEEEeCCHH
Q 011669          100 RYLDAFGGIATVCCGHCH--PYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMPG------NLK--VVFFTNSGT  168 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~--p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~~~------~~~--~v~f~~sGs  168 (480)
                      .+|||..|.+..+-|+.+  |.|.+|+.+++++..  ...|. .....++++.+++++..      +.+  +|++|+||+
T Consensus        50 ~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t  127 (420)
T 4f4e_A           50 TKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGL--PRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGT  127 (420)
T ss_dssp             SCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred             CcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCC--CCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccH
Confidence            568998887655566766  899999999887621  11222 23345566666655422      345  899999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +|++.++++.....+++.|++.+++|+++.........           .+..++..+.  ..++.|    .+++++.++
T Consensus       128 ~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~--~~~~~d----~~~l~~~l~  190 (420)
T 4f4e_A          128 GALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGF-----------EVVAYPYYDA--KTNGVN----FDGMLAALN  190 (420)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTC-----------CEEEEECEET--TTTEEC----HHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCC-----------eEEEeeeecc--ccCccC----HHHHHHHHH
Confidence            99999988665555788999999999987655544322           1222222000  111123    678888886


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Cccccc----ccCCCcceeeec
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFE----AHGVVPDIVTMA  323 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~~----~~~~~pDivt~s  323 (480)
                      +. +.+++++++++.+|++|.+. +.+.+++|.++|++||+++|+||+|.+|++.+. ...+..    ..+....+.+||
T Consensus       191 ~~-~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S  268 (420)
T 4f4e_A          191 GY-EPGTIVVLHACCHNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFS  268 (420)
T ss_dssp             TC-CTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECT
T ss_pred             hC-CCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCC
Confidence            43 24678888888899999764 788899999999999999999999999987641 122221    122233344799


Q ss_pred             cccc-cCcccccccc---CHHHHHhhc----CCCccccCCCcHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHH
Q 011669          324 KGIG-NGIPLGAVVT---TPEIAEVLT----RRNYFNTFGGNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSYL  387 (480)
Q Consensus       324 K~~g-~G~pig~v~~---~~~~~~~l~----~~~~~~t~~~~~~~~aaa~a~L~~i~--------~~~~~~~~~~~~~~l  387 (480)
                      |.++ .|+|+||+++   ++++++.+.    ......+.+.++++++++.+.|+...        -++..++++++++++
T Consensus       269 K~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l  348 (420)
T 4f4e_A          269 KSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGL  348 (420)
T ss_dssp             TTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 7999999863   566554322    11123444567777777777665321        123444555555555


Q ss_pred             HHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHH
Q 011669          388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDAD  467 (480)
Q Consensus       388 ~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id  467 (480)
                      .+.|+++....++....+..|+++|+.+.            ...+.+.+.++||++.+++      ||+++ .+++++++
T Consensus       349 ~~~L~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~l~~~gI~v~~~~------Ris~~-~~~~~~i~  409 (420)
T 4f4e_A          349 VERLKAAGIERDFSFINAQRGMFSYSGLT------------SAQVDRLREEFGIYAVSTG------RICVA-ALNTRNLD  409 (420)
T ss_dssp             HHHHHHTTCSSCCTHHHHSCSSEEECCCC------------HHHHHHHHHHHCEECCTTS------EEEGG-GCCTTTHH
T ss_pred             HHHHHhcCCCCCceeECCCccEEEEeCCC------------HHHHHHHHHhCCEEecCCC------eEEEe-cCCHHHHH
Confidence            55555542111222223445666665541            2456677788999998753      88865 45788899


Q ss_pred             HHHHHHHHHHh
Q 011669          468 YLVDVMDYSLS  478 (480)
Q Consensus       468 ~~l~~l~~~l~  478 (480)
                      +++++|+++++
T Consensus       410 ~~~~~l~~~l~  420 (420)
T 4f4e_A          410 VVANAIAAVLK  420 (420)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998863

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.96  E-value=9e-28  Score=245.27  Aligned_cols=339  Identities=11%  Similarity=0.009  Sum_probs=217.3

Q ss_pred             CCEEEeccCCcc---cccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhCC--CCCC---EEEEeCCHH
Q 011669           98 GRRYLDAFGGIA---TVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP--GNLK---VVFFTNSGT  168 (480)
Q Consensus        98 G~~ylD~~~g~~---~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~~--~~~~---~v~f~~sGs  168 (480)
                      |..+|||..|.+   ...+ ..++.|.+++.+......+   .|. .....++++++++++.  .+.+   +|++|+||+
T Consensus        37 ~~~~i~l~~g~~~~~~~~~-~~~~~v~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~  112 (418)
T 3rq1_A           37 RENVVNGTLGAIHDEEGNL-VFLKTVKEEYLSLSDSEHV---GYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGT  112 (418)
T ss_dssp             GGGCEECCSSCCBCTTSCB-CCCHHHHHHHHTCCHHHHH---SCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHH
T ss_pred             CCCeEECCCCcccCCCCCc-cccHHHHHHHHHhcccccC---CCCCCCChHHHHHHHHHHHhcccCccccccEEECCchH
Confidence            446677777754   1122 2567888887654332111   121 2223445555554331  1234   899999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +|++.+++....  +++.|++.+++|+++.......             |...+.+|.... .|+.|    .+++++.++
T Consensus       113 ~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~l~  172 (418)
T 3rq1_A          113 GGIHHLIHNYTE--PGDEVLTADWYWGAYRVICSDT-------------GRTLVTYSLFDE-HNNFN----HEAFQNRVN  172 (418)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECSBCT-TSSBC----HHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCCEEEECCCCchhHHHHHHHc-------------CCEEEEEeeeCC-CCCcC----HHHHHHHHH
Confidence            999999986643  6789999999998877654433             222222222111 12234    567777775


Q ss_pred             ccC-CCceEEEEEccc-CCCCcceeCCCChHHHHHHHHH------HhCCEEEEcccccCccccCCC--cccccccCCCcc
Q 011669          249 FGT-SGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIK------KAGGLCIADEVQAGFARTGSH--FWGFEAHGVVPD  318 (480)
Q Consensus       249 ~~~-~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~------~~gillI~DEv~tgfgr~G~~--~~~~~~~~~~pD  318 (480)
                      ... ++..++++++.. +|++|.+. +.+.+++|.++|+      +||+++|+||+|.+|+++|..  .+.....++.+|
T Consensus       173 ~~~~~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  251 (418)
T 3rq1_A          173 ELAAKQTNVVVIFNTPGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKE  251 (418)
T ss_dssp             HHHHHCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTT
T ss_pred             HhhccCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCC
Confidence            310 124446666654 88888775 7777999999999      899999999999999877621  112223345555


Q ss_pred             ---ee--eeccccc-cCcccccccc---CHHHHHhhcCCCcc---cc-CCCcHHHHHHHHHHHHHhh------h--hHHH
Q 011669          319 ---IV--TMAKGIG-NGIPLGAVVT---TPEIAEVLTRRNYF---NT-FGGNPVCTAAGHAVLKVIQ------K--DKLQ  377 (480)
Q Consensus       319 ---iv--t~sK~~g-~G~pig~v~~---~~~~~~~l~~~~~~---~t-~~~~~~~~aaa~a~L~~i~------~--~~~~  377 (480)
                         ++  +|||.++ +|+|+||+++   ++++++.+......   .+ .+.+.++++++.++|+..+      +  +.+.
T Consensus       252 ~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  331 (418)
T 3rq1_A          252 ILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYY  331 (418)
T ss_dssp             EEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               32  7999998 7999999999   89998877653211   22 3578888888887775321      0  1233


Q ss_pred             HHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeC
Q 011669          378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITP  457 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p  457 (480)
                      ++++++.+++.+.|+++  .+..  .....|+++|+++.           ....+.+.|.++||++.+++   +++||+.
T Consensus       332 ~~~~~~~~~l~~~L~~~--g~~~--~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g~---~~iRis~  393 (418)
T 3rq1_A          332 QLIRDRADIFKQEAAQV--GLPM--LPYRGGFFITIPTD-----------SANAICEELKKEHIYVIALA---NGIRIAA  393 (418)
T ss_dssp             HHHHHHHHHHHHHHHHH--TCCC--CCCCSSSEEEEECT-----------THHHHHHHHHHTTEECEECS---SEEEEEG
T ss_pred             HHHHHHHHHHHHHHHhc--CCCC--CCCCceEEEEcCCC-----------CHHHHHHHHHhCCEEEecCC---CCeEEEE
Confidence            45555566666666554  2222  22334556666541           13567788899999999874   6899994


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhC
Q 011669          458 PLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      . .++++++++++++|+++++++
T Consensus       394 ~-~~~~~~i~~~~~~l~~~l~~~  415 (418)
T 3rq1_A          394 C-GIPKCQMTGLAEKIYNAMKSL  415 (418)
T ss_dssp             G-GSCHHHHTTHHHHHHHHHHHT
T ss_pred             e-cCCHHHHHHHHHHHHHHHHHH
Confidence            4 469999999999999998753

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.96  E-value=1.2e-27  Score=241.50  Aligned_cols=318  Identities=12%  Similarity=0.070  Sum_probs=220.4

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC-EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~-~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y  194 (480)
                      .+|+|.+|+.+++..  |... ...+...+++++|+++++...+ .|+|++||++|++.+++.+  ..++++|++..++|
T Consensus        34 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~  108 (393)
T 3kgw_A           34 LAPRVLAAGSLRMIG--HMQK-EMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGI  108 (393)
T ss_dssp             CCHHHHHHTTCCCCC--TTSH-HHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSH
T ss_pred             CCHHHHHHhcccccC--cccH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCc
Confidence            578999988764321  2111 1245667899999999875444 5999999999999999977  34788999999998


Q ss_pred             cccccccc-ccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          195 HGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       195 hG~~~~~~-~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      ||...... ...            |.....+|....+.  .|    .+++++.++.   .++++|++++++|++|.+.+ 
T Consensus       109 ~~~~~~~~~~~~------------g~~~~~~~~~~~~~--~d----~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~-  166 (393)
T 3kgw_A          109 WGMRAAEIADRI------------GARVHQMIKKPGEH--YT----LQEVEEGLAQ---HKPVLLFLVHGESSTGVVQP-  166 (393)
T ss_dssp             HHHHHHHHHHHT------------TCEEEEEECCTTCC--CC----HHHHHHHHHH---HCCSEEEEESEETTTTEECC-
T ss_pred             hhHHHHHHHHHc------------CCceEEEeCCCCCC--CC----HHHHHHHHhh---CCCcEEEEeccCCcchhhcc-
Confidence            86432111 111            22222222211111  23    6788888864   25788999999999998876 


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHHhhcCCCc-
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTRRNY-  350 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~~l~~~~~-  350 (480)
                         +++|+++|++||+++|+||+|+ +|  + ..+..+.++  +|+++  ++|+++++.++|++++++++++.+..... 
T Consensus       167 ---l~~i~~l~~~~~~~li~De~~~-~g--~-~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~  237 (393)
T 3kgw_A          167 ---LDGFGELCHRYQCLLLVDSVAS-LG--G-VPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTK  237 (393)
T ss_dssp             ---CTTHHHHHHHTTCEEEEECTTT-TT--T-SCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred             ---HHHHHHHHHHcCCEEEEECCcc-cc--C-cccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCC
Confidence               8899999999999999999997 33  1 222233333  56665  45999887889999999999888754221 


Q ss_pred             ----------------------cccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCcee-e-
Q 011669          351 ----------------------FNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIG-D-  403 (480)
Q Consensus       351 ----------------------~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~-  403 (480)
                                            ..+++.|+.+++++.++++.+.+   +++.++.+++.+++.+.|+++  .+.... . 
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~  315 (393)
T 3kgw_A          238 PVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM--GLKFFVKDP  315 (393)
T ss_dssp             CSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSG
T ss_pred             CCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCCh
Confidence                                  12345678888888888887665   456777888888888888776  232211 1 


Q ss_pred             EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCc--CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Q 011669          404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGF--YGNVFRITP-PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       404 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ....+.++++.+...        ....++.+.|+++ ||++.++..  .++++||++ ++.+|++++++++++|++++++
T Consensus       316 ~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  387 (393)
T 3kgw_A          316 EIRLPTITTVTVPAG--------YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQH  387 (393)
T ss_dssp             GGBCSSEEEEECCTT--------BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCeEEEEeCCCC--------CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence            122245666765321        1245688888887 999987632  357999998 7778999999999999999875

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.95  E-value=4.8e-28  Score=245.28  Aligned_cols=338  Identities=14%  Similarity=0.064  Sum_probs=217.8

Q ss_pred             EEEeccCCcccccCCCCC--HHHHHHHHH-HHHhccccccccC-ChHHHHHHHHHHHhCCC------CCC--EEEEeCCH
Q 011669          100 RYLDAFGGIATVCCGHCH--PYVVDSIVN-QIKRIQHSTVLYL-NHAIADFAEALASKMPG------NLK--VVFFTNSG  167 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~--p~v~~A~~~-~~~~~~~~~~~~~-~~~~~~l~e~L~~~~~~------~~~--~v~f~~sG  167 (480)
                      .+|||..|.+..+-|+.+  |+|.+|+.+ ++....  ...|. .....++++++++++..      +.+  +|++|+||
T Consensus        27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~  104 (397)
T 3fsl_A           27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHG--ASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGG  104 (397)
T ss_dssp             CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred             CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccc--cccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCc
Confidence            478988886544456665  899999998 876521  11222 23445666666665532      356  89999999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++|++.++++.....+++.|++.+++|++..........           .+..++..  ....++-|    .+++++.+
T Consensus       105 ~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~l  167 (397)
T 3fsl_A          105 SGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-----------EVSTYPWY--DEATNGVR----FNDLLATL  167 (397)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTC-----------CEEEECCE--ETTTTEEC----HHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCC-----------ceEEEeee--eccCCcCc----HHHHHHHH
Confidence            999999988665556788999999999987655443321           12222220  00111123    67888888


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Ccccc----cccCCCcceeee
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGF----EAHGVVPDIVTM  322 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~----~~~~~~pDivt~  322 (480)
                      ++. ..+++++++...+|++|.+ .+.+.+++|.++|++||+++|+||+|.+|.+.+. .....    +..+....+.+|
T Consensus       168 ~~~-~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  245 (397)
T 3fsl_A          168 KTL-QAGSIVLLHPCCHNPTGAD-LTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSF  245 (397)
T ss_dssp             TTC-CTTCEEEECSSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEEC
T ss_pred             HhC-CCCCEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecc
Confidence            643 2467888888888888876 4777899999999999999999999999876531 11121    122333445589


Q ss_pred             ccccc-cCcccccccc---CHHHHHhhcCCC----ccccCCCcHHHHHHHHHHHHHh------h--hhHHHHHHHHHHHH
Q 011669          323 AKGIG-NGIPLGAVVT---TPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVI------Q--KDKLQNNAHVVGSY  386 (480)
Q Consensus       323 sK~~g-~G~pig~v~~---~~~~~~~l~~~~----~~~t~~~~~~~~aaa~a~L~~i------~--~~~~~~~~~~~~~~  386 (480)
                      ||.+| .|+|+||+++   .+++++.+....    ...+.+.++++++++.+.|+..      .  -++..++++++.++
T Consensus       246 SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (397)
T 3fsl_A          246 SKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQE  325 (397)
T ss_dssp             TTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 7999999974   456554332211    1234445677777777666421      1  12344555666666


Q ss_pred             HHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHH
Q 011669          387 LKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDA  466 (480)
Q Consensus       387 l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~i  466 (480)
                      +.+.|+++....++.......|+++|+.+.            ...+.+.|.++||++.+++      ||+++ .+++++|
T Consensus       326 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~------Ris~~-~~~~~~i  386 (397)
T 3fsl_A          326 LVKVLSTEMPERNFDYLLNQRGMFSYTGLS------------AAQVDRLREEFGVYLIASG------RMCVA-GLNTANV  386 (397)
T ss_dssp             HHHHHHHHCTTSCCTHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTTC------EEEGG-GCCTTTH
T ss_pred             HHHHHHhcCCCCCceeecCCceEEEecCCC------------HHHHHHHHHhCCEEECCCC------eEEEE-ecCHhhH
Confidence            666666542111121122334666665541            2346677788999998864      88864 4477889


Q ss_pred             HHHHHHHHHHH
Q 011669          467 DYLVDVMDYSL  477 (480)
Q Consensus       467 d~~l~~l~~~l  477 (480)
                      ++++++|++++
T Consensus       387 ~~~~~~l~~~l  397 (397)
T 3fsl_A          387 QRVAKAFAAVM  397 (397)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhC
Confidence            99999998763

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.95  E-value=2.5e-27  Score=239.07  Aligned_cols=333  Identities=14%  Similarity=0.084  Sum_probs=225.6

Q ss_pred             EEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Q 011669           92 YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN  171 (480)
Q Consensus        92 ~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~  171 (480)
                      .++|.+++.+.++...++..+++|..++..+.+                   .++++++++.++.+ +.++|++|||+|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-------------------~~~~~~l~~~~~~~-~~v~~~~sgt~a~   64 (379)
T 3ke3_A            5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM-------------------NDLLSNLKTVYNAE-AAVIIPGSGTYGM   64 (379)
T ss_dssp             ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH-------------------HHHHHHHHHHHTCS-EEEEEESCHHHHH
T ss_pred             hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHH-------------------HHHHHHHHHHhCCC-CEEEEcCChhHHH
Confidence            467999999999987776667788877665433                   34556667777655 6899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCC----CCcCCCC-CCChHHHHHHHHHH
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNP----DPYRGVF-GADGEMYAKDVQDL  246 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p----~~~~~~~-~~d~~~~~~~le~~  246 (480)
                      +++++.+   .++++||+++++|||.....+.....-.       ..+..++.+    +.++.+| ..|    .++++++
T Consensus        65 ~~~~~~~---~~gd~vi~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~g~~~~~~~~~~~d----~~~l~~~  130 (379)
T 3ke3_A           65 EAVARQL---TIDEDCLIIRNGWFSYRWTQILEKGKFA-------KSSTVLTAERTEDTEAPKPFAPVD----IETAVAK  130 (379)
T ss_dssp             HHHHHHH---CTTCEEEEEECSHHHHHHHHHHHHHCCS-------SEEEEEECEESSCCSSCCCEECCC----HHHHHHH
T ss_pred             HHHHHhC---CCCCeEEEEeCCchhHHHHHHHHHhCCC-------CceEEEeccccccccccCCCCCCC----HHHHHHH
Confidence            9998643   4788999999999997644332211000       011222221    1111111 123    6788888


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeecccc
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI  326 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~  326 (480)
                      ++..   ++++|++..+++++|.+. +.+++++|.++|++||+++|+||+|+  |  + ..+..+.+++.+.+.+++|++
T Consensus       131 i~~~---~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~-~~~~~~~~~~d~~~~s~~K~l  201 (379)
T 3ke3_A          131 IKED---KSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--C-VWLDMKELGIDVLISAPQKGW  201 (379)
T ss_dssp             HHHH---TCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--T-CCCCHHHHTCSEEEECTTTTT
T ss_pred             Hhhc---CCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--C-ccccccccCCCEEEecchhhc
Confidence            8531   467788888888888664 67899999999999999999999997  3  2 344455567655566677999


Q ss_pred             ccCccccccccCHHHHHhhcCCC---c-------------------cccCCCcHHHHHHHHHHHHHhhhh---HHHHHHH
Q 011669          327 GNGIPLGAVVTTPEIAEVLTRRN---Y-------------------FNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAH  381 (480)
Q Consensus       327 g~G~pig~v~~~~~~~~~l~~~~---~-------------------~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~  381 (480)
                      +++.++|++++++++++.+....   .                   ..+++.|+..+++..++|+.+.++   +..++.+
T Consensus       202 ~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~  281 (379)
T 3ke3_A          202 SSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQW  281 (379)
T ss_dssp             CSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence            88778999999999988775411   1                   012366778888888999988764   5667778


Q ss_pred             HHHHHHHHHHHHhHHhcCceeeEe-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-------CCCEE
Q 011669          382 VVGSYLKERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-------YGNVF  453 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~i  453 (480)
                      ++.+++++.|+++  .+....... ..+.+..+..  +      ..  .....+.|.++||++.++..       .++.+
T Consensus       282 ~l~~~l~~~l~~~--g~~~~~~~~~~~~~i~~~~~--~------~~--~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~l  349 (379)
T 3ke3_A          282 ELGNRVRKVLTDK--GIESVAAEGFEAPGVVVSYT--E------RD--DMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTF  349 (379)
T ss_dssp             HHHHHHHHHHHHT--TCCBSBCTTCBCSSEEEEEC--S------CH--HHHSSHHHHHTTCCCEECCCCSSCCCTTCCEE
T ss_pred             HHHHHHHHHHHHc--CCEecCCccccCceEEEEcc--C------Cc--chHHHHHHHHCCeEEeCCccccccccCcCCEE
Confidence            8888888888776  232222110 1122222222  1      11  11236678899999987632       15789


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          454 RITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||+++..+|++||++++++|++++++
T Consensus       350 Ris~~~~~t~~di~~~~~~l~~~l~~  375 (379)
T 3ke3_A          350 RLGLFGLDKLTDIDGTVERFEKALDE  375 (379)
T ss_dssp             EEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred             EEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998865

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.95  E-value=6.2e-27  Score=235.48  Aligned_cols=317  Identities=17%  Similarity=0.146  Sum_probs=221.1

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC--CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~--~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~  193 (480)
                      .+|+|.+|+.+++..  +. .....+...+++++++++++.+.  ++++|++||++|++ +++.+  ..++++|++.+++
T Consensus        13 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~--~~~gd~vi~~~~~   86 (384)
T 3zrp_A           13 IKEDVLVAGLENNVG--FT-SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL--LKPNDKILVVSNG   86 (384)
T ss_dssp             CCHHHHHHTTCCSCC--TT-SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG--CCTTCEEEEECSS
T ss_pred             CCHHHHHHhhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh--cCCCCEEEEecCC
Confidence            478999988775532  11 11224567889999999988766  78999999999999 88754  3477899999999


Q ss_pred             cccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       194 yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      ||+.....+...           .|...+.+|....+  ..|    .+++++.++.   .++++|+++++++++|.+.+ 
T Consensus        87 ~~~~~~~~~~~~-----------~g~~~~~v~~~~~~--~~d----~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~-  145 (384)
T 3zrp_A           87 VFGDRWEQIFKR-----------YPVNVKVLRPSPGD--YVK----PGEVEEEVRK---SEYKLVALTHVETSTGVREP-  145 (384)
T ss_dssp             HHHHHHHHHHTT-----------SSCEEEEECCSTTC--CCC----HHHHHHHHHH---SCEEEEEEESEETTTTEECC-
T ss_pred             cchHHHHHHHHH-----------cCCcEEEecCCCCC--CCC----HHHHHHHHHh---CCCcEEEEeCCCCCCceECc-
Confidence            998533222111           13333333322211  123    6788888874   25889999999999998876 


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHHhh-cCCC-
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVL-TRRN-  349 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~~l-~~~~-  349 (480)
                         +++|.++|++||+++|+||+|+ ++..   ......  ..+|+++  ++|+++++.++|++++++++++.+ .... 
T Consensus       146 ---l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~  216 (384)
T 3zrp_A          146 ---VKDVINKIRKYVELIVVDGVSS-VGAE---EVKAEE--WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSI  216 (384)
T ss_dssp             ---HHHHHHHHGGGEEEEEEECTTT-TTTS---CCCTTT--TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCS
T ss_pred             ---HHHHHHHHHhcCCEEEEECccc-ccCc---cccccc--cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCC
Confidence               9999999999999999999997 3221   112222  2356665  559998878899999999988776 1100 


Q ss_pred             --------------------ccccC-CCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeE-
Q 011669          350 --------------------YFNTF-GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDV-  404 (480)
Q Consensus       350 --------------------~~~t~-~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-  404 (480)
                                          ....+ +.|...+++..++++.+.++   ++.++.+++.+++.+.|+++  .+...... 
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~  294 (384)
T 3zrp_A          217 AGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRP  294 (384)
T ss_dssp             CCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSG
T ss_pred             CcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcc
Confidence                                11223 44666777777888876543   56777788888888888776  33222211 


Q ss_pred             -eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          405 -RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       405 -~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       ...+.++++.+..         .....+.+.|.++||.+.++.. ..+++||+++..+|++++++++++|++++++
T Consensus       295 ~~~~~~~~~~~~~~---------~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~  362 (384)
T 3zrp_A          295 ESYSNTVTGVILKV---------ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRK  362 (384)
T ss_dssp             GGBCSSEEEEECSS---------SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCccEEEEECCC---------CCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence             1235666776632         1246788899999999987642 1278999999889999999999999998864

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.95  E-value=9.9e-27  Score=236.46  Aligned_cols=320  Identities=13%  Similarity=0.128  Sum_probs=219.7

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCE-EEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKV-VFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~-v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y  194 (480)
                      .+|+|.+|+.+++  ..|.... ..+...+++++++++++.+.+. +++++||++|++.+++.+.  .++++|++.+++|
T Consensus        24 ~~~~v~~a~~~~~--~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--~~gd~Vl~~~~~~   98 (411)
T 3nnk_A           24 ADPRVLRAMSSQL--IGQYDPA-MTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--RPGDKVLVPVFGR   98 (411)
T ss_dssp             CCHHHHHHHTSCC--CCTTCHH-HHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--CTTCEEEEEECSH
T ss_pred             CCHHHHHHhhccc--cccccHH-HHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--CCCCEEEEecCCc
Confidence            5789999887654  2222111 1355688999999998765554 8899999999999999873  4788999999999


Q ss_pred             cccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          195 HGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       195 hG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      |+.... .....            |...+.+|....  +..|    .++++++++..   ++++|+++++++++|.+.+ 
T Consensus        99 ~~~~~~~~~~~~------------g~~~~~v~~~~~--~~~d----~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~-  156 (411)
T 3nnk_A           99 FGHLLCEIARRC------------RAEVHTIEVPWG--EVFT----PDQVEDAVKRI---RPRLLLTVQGDTSTTMLQP-  156 (411)
T ss_dssp             HHHHHHHHHHHT------------TCEEEEEECCTT--CCCC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC-
T ss_pred             hHHHHHHHHHHc------------CCeEEEEecCCC--CCCC----HHHHHHHHhhC---CCeEEEEeCCCCCcceecc-
Confidence            984311 11111            222222221111  1123    67888888632   6789999999999998876 


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCC----
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN----  349 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~----  349 (480)
                         +++|.++|++||+++|+||+|+ ++..   .+..+..++...+.+++|+++++.++|++++++++++.+....    
T Consensus       157 ---l~~i~~l~~~~~~~li~Dea~~-~~~~---~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~  229 (411)
T 3nnk_A          157 ---LAELGEICRRYDALFYTDATAS-LGGN---PLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEE  229 (411)
T ss_dssp             ---CTTHHHHHHHHTCEEEEECTTT-BTTB---CCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCG
T ss_pred             ---HHHHHHHHHHcCCEEEEECCcc-cCCc---ccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccc
Confidence               8899999999999999999986 3321   2223333433334456699888788999999999988765432    


Q ss_pred             --------------------------------ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHh
Q 011669          350 --------------------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       350 --------------------------------~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l  394 (480)
                                                      ....++.|..+++++.++++.+.++   +..++.+++.+++.+.|+++
T Consensus       230 ~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  309 (411)
T 3nnk_A          230 GIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM  309 (411)
T ss_dssp             GGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence                                            0122345778888888888876554   56777788888888888775


Q ss_pred             HHhcCceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccC--cCCCEEEEeC-CCCCCHHHHHHH
Q 011669          395 KDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGG--FYGNVFRITP-PLCFTKEDADYL  469 (480)
Q Consensus       395 ~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p-~~~~t~~~id~~  469 (480)
                        .+..... ....+.++++.+...        .....+.+.|+++ ||.+.++.  ..++++||++ +..+|+++++++
T Consensus       310 --g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~  379 (411)
T 3nnk_A          310 --GLETFGDLKHKMNNVLGVVIPQG--------INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTT  379 (411)
T ss_dssp             --TCCBCSCGGGBCSSEEEEECCTT--------CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred             --CCEeCCCcccccccEEEEECCCC--------CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHH
Confidence              2222211 122356677766321        1145688888776 99998753  2357999998 778899999999


Q ss_pred             HHHHHHHHhh
Q 011669          470 VDVMDYSLSK  479 (480)
Q Consensus       470 l~~l~~~l~~  479 (480)
                      +++|++++++
T Consensus       380 ~~~l~~~l~~  389 (411)
T 3nnk_A          380 LSALEAVLNY  389 (411)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999865

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.95  E-value=1.2e-26  Score=233.22  Aligned_cols=320  Identities=15%  Similarity=0.072  Sum_probs=207.9

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC--CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~--~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~  193 (480)
                      .+|+|.+|+.+++..  |... ...+...++++++++.++.+.  +.+++++||++|++.+++.+.  .++++||+.+++
T Consensus        30 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--~~gd~vi~~~~~  104 (376)
T 3f0h_A           30 SSEEVRAIGAEQVPY--FRTT-EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--TKKDKVLVIDGG  104 (376)
T ss_dssp             CCHHHHHHHTSCCCC--CSSH-HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--CTTCCEEEEESS
T ss_pred             CcHHHHHHhcCCCCC--CCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--CCCCeEEEEeCC
Confidence            478899988775532  2211 123566788899999876543  455569999999999999775  367899999999


Q ss_pred             cccccccccc-cccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeC
Q 011669          194 YHGNAAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL  272 (480)
Q Consensus       194 yhG~~~~~~~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  272 (480)
                      ||+....... ..+.          .+..++.+.    .+..|    .++++++++    .++++|+++++++++|.+.+
T Consensus       105 ~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~~~----~~~~~v~~~~~~nptG~~~~  162 (376)
T 3f0h_A          105 SFGHRFVQLCEIHEI----------PYVALKLEH----GKKLT----KEKLYEYDN----QNFTGLLVNVDETSTAVLYD  162 (376)
T ss_dssp             HHHHHHHHHHHHTTC----------CEEEEECCT----TCCCC----HHHHHTTTT----SCCCEEEEESEETTTTEECC
T ss_pred             hhhHHHHHHHHHcCC----------ceEEEeCCC----CCCCC----HHHHHHhhc----cCceEEEEecccCCcceecC
Confidence            9885432111 1111          122233221    12223    566766543    36888999999999999876


Q ss_pred             CCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCc--
Q 011669          273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--  350 (480)
Q Consensus       273 ~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~--  350 (480)
                          +++|+++|++||+++|+||+|+++++.    +..+.+++...+.+++|+++++.++|++++++++++.+.....  
T Consensus       163 ----l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~  234 (376)
T 3f0h_A          163 ----TMMIGEFCKKNNMFFVCDCVSAFLADP----FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRT  234 (376)
T ss_dssp             ----HHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCC
T ss_pred             ----HHHHHHHHHHcCCEEEEEcCccccCcc----ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCc
Confidence                999999999999999999999865432    2334455555555777999977778999999999887764211  


Q ss_pred             ---------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-eccceeEEEE
Q 011669          351 ---------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVE  414 (480)
Q Consensus       351 ---------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~  414 (480)
                                     ...+..+..+++++.++++.+.+++..+++.+....+++.+.+..++++..... ...+.++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~  314 (376)
T 3f0h_A          235 MYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVH  314 (376)
T ss_dssp             STTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEE
T ss_pred             eeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEe
Confidence                           113344555557777888876654223333333334444444333333321111 1122222222


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHc-CceeeccC--cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGG--FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .  +.       .....+.+.|.++ ||++.++.  ..++++||+++..+|++|+++++++|++++++
T Consensus       315 ~--~~-------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          315 P--TT-------ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             E--SS-------SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             C--CC-------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            1  11       1146788888888 99998763  23578999999999999999999999998864

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.95  E-value=3.3e-27  Score=233.90  Aligned_cols=310  Identities=14%  Similarity=0.107  Sum_probs=210.6

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC---CCCCEEEEeCCHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEANELAI  175 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~---~~~~~v~f~~sGseA~~~Al  175 (480)
                      .+++||.++...  ++ .+|+|.+|+.+++.+.  ....|+.....+++++|+++++   .+.++|++++||++|++.++
T Consensus        19 ~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~--~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~   93 (335)
T 1uu1_A           19 RDKTYLALNENP--FP-FPEDLVDEVFRRLNSD--ALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM   93 (335)
T ss_dssp             CCSEEESSCCCS--SC-CCHHHHHHHHHTCCGG--GGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred             CcceECCCCCCC--CC-CCHHHHHHHHHHhhhh--hhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence            468898887753  44 6899999999887432  1123444447789999999887   56678999999999999999


Q ss_pred             HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (480)
                      +.+     ++.|++. ++||++.......             |...+.+|..  ..|..|    .+++         .++
T Consensus        94 ~~~-----gd~Vl~~-p~y~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l---------~~~  139 (335)
T 1uu1_A           94 LMF-----DRSVFFP-PTYSCYRIFAKAV-------------GAKFLEVPLT--KDLRIP----EVNV---------GEG  139 (335)
T ss_dssp             HHS-----SEEEECS-SSCHHHHHHHHHH-------------TCEEEECCCC--TTSCCC----CCCC---------CTT
T ss_pred             HHh-----CCcEEEC-CCcHHHHHHHHHc-------------CCeEEEeccC--CCCCCC----HHHc---------CCC
Confidence            865     5789999 9999977544332             2222222211  112222    1122         145


Q ss_pred             EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccCCCcceeeeccccc-cCcccc
Q 011669          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTMAKGIG-NGIPLG  333 (480)
Q Consensus       256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~~~pDivt~sK~~g-~G~pig  333 (480)
                      ++|++...+|++|.+.+    .+++.++++.+| ++|+||+|++|+..  .... .+..+....+.++||.+| +|+|+|
T Consensus       140 ~~v~l~~p~nptG~~~~----~~~l~~l~~~~~-~li~De~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G  212 (335)
T 1uu1_A          140 DVVFIPNPNNPTGHVFE----REEIERILKTGA-FVALDEAYYEFHGE--SYVDFLKKYENLAVIRTFSKAFSLAAQRVG  212 (335)
T ss_dssp             EEEEEESSCTTTCCCCC----HHHHHHHHHTTC-EEEEECTTHHHHCC--CCGGGGGTCSSEEEEEESTTTTTCGGGCCE
T ss_pred             CEEEEeCCCCCCCCCCC----HHHHHHHHHhCC-EEEEECcchhhcch--hHHHHhhhCCCEEEEecchhhcCCcccCeE
Confidence            66664434778887764    455555555558 99999999987532  2222 233344455668999999 899999


Q ss_pred             ccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEE
Q 011669          334 AVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG  412 (480)
Q Consensus       334 ~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  412 (480)
                      |+++++++++.+....  .+++.|+++++++.++|+..+ -++..++++++.+++.+.|+++    +. ...++.|.+++
T Consensus       213 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~  285 (335)
T 1uu1_A          213 YVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GY-RITDSRGNFVF  285 (335)
T ss_dssp             EEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TC-CBCCCCSSEEE
T ss_pred             EEEeCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----Cc-EEcCCCCeEEE
Confidence            9999999988776532  457889999999999987521 1345556666666776666654    22 22345577888


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      +.+.        . .....+.+.|.++||++.++   .+++||++.   +++|+++++++|+++
T Consensus       286 ~~~~--------~-~~~~~~~~~l~~~gi~v~~~---~~~iRis~~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          286 VFME--------K-EEKERLLEHLRTKNVAVRSF---REGVRITIG---KREENDMILRELEVF  334 (335)
T ss_dssp             EECC--------T-HHHHHHHHHHHHHTEEEEEE---TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred             EECC--------C-CCHHHHHHHHHHCCEEEEEC---CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence            7762        1 23466888888999999883   578999953   578899999998764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.95  E-value=1.9e-26  Score=233.00  Aligned_cols=331  Identities=12%  Similarity=0.046  Sum_probs=226.8

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~  177 (480)
                      ...|||..+.      ++.+|+|.+|+.+++..  |. .....+...+++++++++++.+.+++++++||++|++.+++.
T Consensus         8 ~~~yl~~~~~------~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~   78 (392)
T 2z9v_A            8 DPVITLTAGP------VNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAAS   78 (392)
T ss_dssp             CCSEECSSSC------CCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHH
T ss_pred             CcceeecCCC------cCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHH
Confidence            3468886432      47889999998876643  21 111234578899999999987667899999999999999997


Q ss_pred             HHhhcCCceEEEEcCCccccccccc-ccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          178 ARLYTGCNDIISLRNAYHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       178 ar~~~~~~~ii~~~~~yhG~~~~~~-~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      +.  .++++|++.+++||+.....+ ...+.          .+..++.+.  .  +..|    .+++++.++.  .++++
T Consensus        79 ~~--~~gd~Vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~--~~~d----~~~l~~~l~~--~~~~~  136 (392)
T 2z9v_A           79 LI--SPDDVVLNLASGVYGKGFGYWAKRYSP----------HLLEIEVPY--N--EAID----PQAVADMLKA--HPEIT  136 (392)
T ss_dssp             HC--CTTCCEEEEESSHHHHHHHHHHHHHCS----------CEEEEECCT--T--SCCC----HHHHHHHHHH--CTTCC
T ss_pred             hc--CCCCEEEEecCCcccHHHHHHHHHcCC----------ceEEeeCCC--C--CCCC----HHHHHHHHhc--CCCCc
Confidence            73  367889999999998631111 11111          122233221  1  1123    6788888863  13578


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGA  334 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~  334 (480)
                      +|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...   +....+  .+|+++  ++|+++++.++|+
T Consensus       137 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d~~~~s~sK~~~~~~g~G~  206 (392)
T 2z9v_A          137 VVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGMK---THPEDC--KADIYVTGPNKCLGAPPGLTM  206 (392)
T ss_dssp             EEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTBS---CCGGGG--TCSEEEECSSSTTCCCSCCEE
T ss_pred             EEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCcc---cccccc--cceEEEecCcccccCCCceeE
Confidence            8999999999998876    9999999999999999999997 43221   122222  356664  5799887667799


Q ss_pred             cccCHHHHHhhcCCC--------------------ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Q 011669          335 VVTTPEIAEVLTRRN--------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL  391 (480)
Q Consensus       335 v~~~~~~~~~l~~~~--------------------~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L  391 (480)
                      +++++++++.+....                    .....+.|+.+++++.++|+.+.+.   ++.++.+++.+++++.|
T Consensus       207 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L  286 (392)
T 2z9v_A          207 MGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV  286 (392)
T ss_dssp             EEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            999999887664210                    1123345677777777888876543   46677788888888888


Q ss_pred             HHhHHhcCcee-eE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCc--CCCEEEEeC-CCCCCHHH
Q 011669          392 TALKDKYGIIG-DV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGF--YGNVFRITP-PLCFTKED  465 (480)
Q Consensus       392 ~~l~~~~~~~~-~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~~t~~~  465 (480)
                      +++  .+.... .. ...+.++++.+...        .....+.+.|.++ ||.+.++..  ..+++||++ +..+|+++
T Consensus       287 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~  356 (392)
T 2z9v_A          287 TAM--GLSVWAASDSIASPTTTAVRTPDG--------VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIY  356 (392)
T ss_dssp             HHT--TCCBSSSSGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHH
T ss_pred             HHc--CCeeccCCccccCCceEEEECCCC--------CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHH
Confidence            775  333221 10 11466677766311        1145688888887 999988642  357899996 43789999


Q ss_pred             HHHHHHHHHHHHhh
Q 011669          466 ADYLVDVMDYSLSK  479 (480)
Q Consensus       466 id~~l~~l~~~l~~  479 (480)
                      +++++++|++++++
T Consensus       357 i~~~~~~l~~~~~~  370 (392)
T 2z9v_A          357 AIAALTALGGAMNA  370 (392)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998865

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.95  E-value=8.3e-28  Score=245.04  Aligned_cols=343  Identities=11%  Similarity=0.021  Sum_probs=218.2

Q ss_pred             CCCEEEeccCCcccccCCC--CCHHHHHHHHH-HHHhcccccccc-CChHHHHHHHHHHHhCCC------CCCEEEE--e
Q 011669           97 NGRRYLDAFGGIATVCCGH--CHPYVVDSIVN-QIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF--T  164 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh--~~p~v~~A~~~-~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~------~~~~v~f--~  164 (480)
                      +|+.++||..|.+...-|+  .+|.|.+++.+ ++...  ....| ......++++.+++++..      +.++|++  |
T Consensus        27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t  104 (412)
T 1yaa_A           27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS--YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQS  104 (412)
T ss_dssp             CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTT--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred             CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcc--cccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEec
Confidence            3566788888876433343  46899999988 77532  11123 234456677777776621      3568999  9


Q ss_pred             CCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHH
Q 011669          165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ  244 (480)
Q Consensus       165 ~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le  244 (480)
                      +||++|++.++++++...+++.|++.+++|+++.........           .+..++..+.  ..++.|    .++++
T Consensus       105 ~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~--~~~~~d----~~~l~  167 (412)
T 1yaa_A          105 LSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL-----------KTATYPYWAN--ETKSLD----LNGFL  167 (412)
T ss_dssp             EHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTC-----------CEEEEECEET--TTTEEC----HHHHH
T ss_pred             cchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCc-----------eEEEEeeecC--CCCccC----HHHHH
Confidence            999999999987766556778999999999987655433211           1122221000  012223    67788


Q ss_pred             HHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccC--CCcccc-cccCCCc----
Q 011669          245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG--SHFWGF-EAHGVVP----  317 (480)
Q Consensus       245 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G--~~~~~~-~~~~~~p----  317 (480)
                      +.++.. +...+++++...++++|.+ .+.+.+++|.++|++||+++|+||+|.+|++.+  .....+ ...+..+    
T Consensus       168 ~~l~~~-~~~~~~~~~~~p~nPtG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
T 1yaa_A          168 NAIQKA-PEGSIFVLHSCAHNPTGLD-PTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSP  245 (412)
T ss_dssp             HHHHHS-CTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCC
T ss_pred             HHHHhC-CCCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcc
Confidence            888642 1134555556677777865 477889999999999999999999999887653  011122 1111122    


Q ss_pred             --ceeeecccccc-Cccccccc--c-----CHH----HHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--------hhH
Q 011669          318 --DIVTMAKGIGN-GIPLGAVV--T-----TPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--------KDK  375 (480)
Q Consensus       318 --Divt~sK~~g~-G~pig~v~--~-----~~~----~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--------~~~  375 (480)
                        .+.++||.++. |+|+||++  +     +++    +++.+.......+.+.|+++++++.++|+...        -++
T Consensus       246 ~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  325 (412)
T 1yaa_A          246 VFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVT  325 (412)
T ss_dssp             EEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             eEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence              24478999996 99999998  7     566    66666542223344558899999988887542        123


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEE
Q 011669          376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRI  455 (480)
Q Consensus       376 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi  455 (480)
                      ..++++++.+++.+.|+++....++.......|+++|+.+        +    ...+.+.+.++||++.+      ++||
T Consensus       326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gi~v~~------~~Ri  387 (412)
T 1yaa_A          326 MSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--------T----PQMVKRLEETHAVYLVA------SGRA  387 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCT------TSEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC--------C----HHHHHHHHHhCCEEecc------CcEE
Confidence            4455555566666666554100001111222345555432        1    23455555678999975      3799


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          456 TPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++. .+++++++++++|+++++.
T Consensus       388 s~~~-~~~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          388 SIAG-LNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             EGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred             EEcc-CCHhHHHHHHHHHHHHHHh
Confidence            9763 5999999999999998864

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.95  E-value=1.1e-25  Score=228.56  Aligned_cols=330  Identities=15%  Similarity=0.080  Sum_probs=222.3

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-ccccc-----CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLY-----LNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~~~-----~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA  170 (480)
                      ++..|||+.++.      +.+|+|.+++.+++..... ....|     ..+...+++++++++++.+.++|+|++||+++
T Consensus        25 ~~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a   98 (406)
T 3cai_A           25 DGWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVL   98 (406)
T ss_dssp             SSCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred             CCeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHH
Confidence            357899986653      5789999999999876421 11122     24567899999999998766789999999999


Q ss_pred             HHHHHHHHH-hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          171 NELAIMMAR-LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       171 ~~~Alk~ar-~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      ++.+++... ...+++.|++..++|++.......+...         .|...+.+|... ..+..|    .++|++.++ 
T Consensus        99 l~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~---------~g~~v~~v~~~~-~~~~~d----~~~l~~~l~-  163 (406)
T 3cai_A           99 LSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHR---------YGAKVKWAEVDI-ETGELP----TWQWESLIS-  163 (406)
T ss_dssp             HHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHH---------HBCEEEEECCCT-TTCCCC----GGGHHHHCC-
T ss_pred             HHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHh---------cCCeEEEEecCc-ccCCcC----HHHHHHHhC-
Confidence            999988542 2346788999999998765443322100         012222222110 011113    467777774 


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIG  327 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g  327 (480)
                         +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|..   .+....++  +|++  +++|.+|
T Consensus       164 ---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~--~d~~~~s~~K~~g  230 (406)
T 3cai_A          164 ---KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYR---LLDIRETD--ADVVTVNAHAWGG  230 (406)
T ss_dssp             ---TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTC---CCCHHHHC--CSEEEEEGGGGTS
T ss_pred             ---CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC---CCCchhcC--CCEEEeehhhhcC
Confidence               36899999999999998876    8999999999999999999997 3322   12223334  5665  5679776


Q ss_pred             cCcccc-ccccCHHHHHhhcCCCc---------cccCCCcHHHHHHHHHHHHHhhh-----------------hHHHHHH
Q 011669          328 NGIPLG-AVVTTPEIAEVLTRRNY---------FNTFGGNPVCTAAGHAVLKVIQK-----------------DKLQNNA  380 (480)
Q Consensus       328 ~G~pig-~v~~~~~~~~~l~~~~~---------~~t~~~~~~~~aaa~a~L~~i~~-----------------~~~~~~~  380 (480)
                      ++  +| ++++++++++.+....+         ......|+.+++++.++++.+.+                 +++.++.
T Consensus       231 ~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  308 (406)
T 3cai_A          231 PP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYL  308 (406)
T ss_dssp             CS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHH
T ss_pred             CC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHH
Confidence            43  89 99999999887765432         11334577777777788887654                 2344555


Q ss_pred             HHHHHHHHHHHHHhHHhcCceeeEe---ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC----------
Q 011669          381 HVVGSYLKERLTALKDKYGIIGDVR---GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG----------  447 (480)
Q Consensus       381 ~~~~~~l~~~L~~l~~~~~~~~~v~---g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------  447 (480)
                      +++.+++.+.|++    ++.+....   ..+.++++.+...         ....+.+.|.++||.+.++.          
T Consensus       309 ~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~  375 (406)
T 3cai_A          309 NRVFDYLMVSLRS----LPLVMLIGRPEAQIPVVSFAVHKV---------PADRVVQRLADNGILAIANTGSRVLDVLGV  375 (406)
T ss_dssp             HHHHHHHHHHHHT----CTTEEECCCCSSBCSEEEEEETTB---------CHHHHHHHHHHTTEECEECCSCHHHHHHTT
T ss_pred             HHHHHHHHHHHhc----CCCeEEcCCccccCCEEEEEECCc---------CHHHHHHHHHHCCcEEecCChHHHHHHcCC
Confidence            5566666665554    33222111   1344677766311         14568888889999998764          


Q ss_pred             -cCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          448 -FYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       448 -~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                       ...+++||+++..+|++++++++++|++
T Consensus       376 ~~~~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          376 NDVGGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             TTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence             1137899999988999999999999875

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.95  E-value=6.9e-27  Score=242.19  Aligned_cols=353  Identities=16%  Similarity=0.125  Sum_probs=215.2

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      .|+.||||.+++++       +.|.+++.+++.....  .....+...+|+++|+++++.  ++|+||+||+||++.|++
T Consensus        41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~--~y~~~~~~~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~  109 (467)
T 1ax4_A           41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDE--AYAGSRNYYDLKDKAKELFNY--DYIIPAHQGRGAENILFP  109 (467)
T ss_dssp             GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCC--CSSSCHHHHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHH
T ss_pred             CCceeeecccCcCC-------HHHHHHHHHHHhhccc--ccccCccHHHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHH
Confidence            47889999887654       7888888877654321  222457788999999999954  789999999999999999


Q ss_pred             HHHhh---cCCce---EEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC--CCChHHHHHHHHHHHH
Q 011669          177 MARLY---TGCND---IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF--GADGEMYAKDVQDLID  248 (480)
Q Consensus       177 ~ar~~---~~~~~---ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~--~~d~~~~~~~le~~i~  248 (480)
                      +++.+   +| +.   ||+. ..+|+.....+...+.........      ...+.....+|  ..|    .++|+++++
T Consensus       110 ~~~~~~~~~G-d~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~~~d----~~~le~~i~  177 (467)
T 1ax4_A          110 VLLKYKQKEG-KAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTE------KAFDSETYDDWKGDFD----IKKLKENIA  177 (467)
T ss_dssp             HHHHHHHHTT-CCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCG------GGGCTTSCCTTTTCBC----HHHHHHHHH
T ss_pred             HHHHhhccCC-CccceEEEe-ccccchhhHHHhccCCceeccccc------ccccccccCCcccccC----HHHHHHHHH
Confidence            98764   44 34   6665 333355444444433211100000      00000000111  123    678888887


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC----c------cccCCCccccc-ccCCCc
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----F------ARTGSHFWGFE-AHGVVP  317 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg----f------gr~G~~~~~~~-~~~~~p  317 (480)
                      ....+++++|++++++|++|..+++.+++++|+++|++||++||+||+|..    |      +..|.....+. .....+
T Consensus       178 ~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (467)
T 1ax4_A          178 QHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYA  257 (467)
T ss_dssp             HHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGC
T ss_pred             hcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhcccc
Confidence            432236899999999998844556889999999999999999999999752    0      22221000000 000124


Q ss_pred             cee--eeccccccCcccc-ccccC-H-HHHHhhcCC----CccccCCCcHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHH
Q 011669          318 DIV--TMAKGIGNGIPLG-AVVTT-P-EIAEVLTRR----NYFNTFGGNPVCTAAGH-AVLKVIQKDKLQNNAHVVGSYL  387 (480)
Q Consensus       318 Div--t~sK~~g~G~pig-~v~~~-~-~~~~~l~~~----~~~~t~~~~~~~~aaa~-a~L~~i~~~~~~~~~~~~~~~l  387 (480)
                      |++  +++|++  |.|+| +++++ + ++++.+...    ....++++++..+.++. ++|+.+.+++..++..++++++
T Consensus       258 d~~~~s~sK~~--g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  335 (467)
T 1ax4_A          258 DALTMSAKKDP--LLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYL  335 (467)
T ss_dssp             SEEEEETTSTT--CCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ceEEEeccccC--CCCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            665  456665  45665 45566 5 777655421    11235555554443333 3566544444555566777888


Q ss_pred             HHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCC-CHHHHHHHHHHH-HHcCceeeccCc---------------CC
Q 011669          388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP-AKAETLYIMDKM-KEMGVLVGKGGF---------------YG  450 (480)
Q Consensus       388 ~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~-~~~~~~~~~~~l-~~~Gv~v~~~~~---------------~~  450 (480)
                      ++.|++.  .++.+.  ...|.++|+.+..- ....+ .......+.+.| .++||.+.+++.               ..
T Consensus       336 ~~~L~~~--~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~  410 (467)
T 1ax4_A          336 GDRLREA--GIPIQY--PTGGHAVFVDCKKL-VPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADM  410 (467)
T ss_dssp             HHHHHHT--TCCBCS--SCCSSEEEEESTTT-CTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred             HHHHHhC--CCCccc--CCCceEEEEehhhh-ccccccCCCCHHHHHHHHHHhcCceeeecCcccccccccccccccccc
Confidence            8888762  333332  23456666662100 00001 111346688888 889999987321               12


Q ss_pred             CEEEEeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669          451 NVFRITPP-LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       451 ~~iRi~p~-~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++||++| ..+|++++++++++|++++++
T Consensus       411 ~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  440 (467)
T 1ax4_A          411 EFMRLTIARRVYTNDHMDYIADALIGLKEK  440 (467)
T ss_dssp             CEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred             ceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence            78999999 558999999999999987653

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.95  E-value=2.2e-26  Score=232.61  Aligned_cols=332  Identities=14%  Similarity=0.080  Sum_probs=222.3

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC-EEEEeCCHHHHHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELA  174 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~-~v~f~~sGseA~~~A  174 (480)
                      .+|+.|+|..+..      ..+|+|.+|+.+++..  +. ..+..+...+++++++++++.+.+ ++++++||++|++.+
T Consensus        16 ~~~~~~~~~~g~~------~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   86 (393)
T 2huf_A           16 VTPNKLLMGPGPS------NAPQRVLDAMSRPILG--HL-HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT   86 (393)
T ss_dssp             CCCCCEECSSSCC------CCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred             CCCCeEEecCCCC------CCCHHHHHHHHhhhcc--CC-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence            4567777754432      3679999998776543  11 112345678999999999976654 799999999999999


Q ss_pred             HHHHHhhcCCceEEEEcCCccccccccc-ccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          175 IMMARLYTGCNDIISLRNAYHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~-~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      ++.+.  .++++|++.+++||+.....+ ...+.          .+..++.+.  .  +..|    .+++++.++..   
T Consensus        87 ~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~--~~~d----~~~l~~~i~~~---  143 (393)
T 2huf_A           87 LCNLL--EDGDVILIGHTGHWGDRSADMATRYGA----------DVRVVKSKV--G--QSLS----LDEIRDALLIH---  143 (393)
T ss_dssp             HHHHC--CTTCEEEEEESSHHHHHHHHHHHHTTC----------EEEEEECCT--T--CCCC----HHHHHHHHHHH---
T ss_pred             HHHHh--CCCCEEEEECCCcchHHHHHHHHHcCC----------eeEEEeCCC--C--CCCC----HHHHHHHHhcc---
Confidence            99773  367889999999998421111 10110          122222211  1  1123    67788888631   


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCcc
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIP  331 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~p  331 (480)
                      ++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...   +....  ..+|+++  ++|+++++.+
T Consensus       144 ~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~~---~~~~~--~~~d~~~~s~sK~l~g~~G  213 (393)
T 2huf_A          144 KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGAP---MFMDR--WEIDAMYTGSQKVLGAPPG  213 (393)
T ss_dssp             CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT--TTCSEEECCSSSTTCCCSS
T ss_pred             CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC---cchhh--cCccEEEECCCcccccCCC
Confidence            4678888888999998876    8899999999999999999986 54322   22222  2367665  5699876555


Q ss_pred             ccccccCHHHHHhhcCCC----c------------------cccC-CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHH
Q 011669          332 LGAVVTTPEIAEVLTRRN----Y------------------FNTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGS  385 (480)
Q Consensus       332 ig~v~~~~~~~~~l~~~~----~------------------~~t~-~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~  385 (480)
                      +|++++++++++.+....    .                  ..++ +.+..+++++.++|+.+.+   ++..++.+++.+
T Consensus       214 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  293 (393)
T 2huf_A          214 ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAK  293 (393)
T ss_dssp             CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             eEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            699999999988765431    0                  1122 3456666667778887643   346677778888


Q ss_pred             HHHHHHHHhHHhcCceeeEe-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCc--CCCEEEEeC-CCC
Q 011669          386 YLKERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGF--YGNVFRITP-PLC  460 (480)
Q Consensus       386 ~l~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~  460 (480)
                      ++++.|+++  .+....... ..+.++++.+...        .....+.+.|+++ ||.+.++..  ..+++||++ ++.
T Consensus       294 ~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~  363 (393)
T 2huf_A          294 RLYRGLQDA--GFELYADPKDRLSTVTTIKVPQG--------VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQN  363 (393)
T ss_dssp             HHHHHHHHT--TCCBSSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGG
T ss_pred             HHHHHHHHc--CCeeccCccccCCcEEEEEcCCC--------CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCc
Confidence            888888775  333222111 1244666765311        1145678888765 999987643  257899998 656


Q ss_pred             CCHHHHHHHHHHHHHHHhh
Q 011669          461 FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       461 ~t~~~id~~l~~l~~~l~~  479 (480)
                      ++++++++++++|++++++
T Consensus       364 ~~~e~i~~~~~~l~~~~~~  382 (393)
T 2huf_A          364 ATTERVDRVLQVFQEAVAA  382 (393)
T ss_dssp             CSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            7899999999999998764

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.95  E-value=1.3e-26  Score=231.06  Aligned_cols=329  Identities=11%  Similarity=0.022  Sum_probs=214.7

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHh
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL  180 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~  180 (480)
                      +++|.++.    .|+.+|+|.+++.+++...  ....+..+...++++++++.++.+.++|+|++||++|++.+++.++.
T Consensus        15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~~--~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~   88 (359)
T 1svv_A           15 PYSFVNDY----SVGMHPKILDLMARDNMTQ--HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR   88 (359)
T ss_dssp             CEECSCSC----SSCCCHHHHHHHHHHTTCC--CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred             eEEecCCC----cCCCCHHHHHHHHHHHhhc--cccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence            56665532    3589999999999988642  33345678889999999999887778899999999999999998754


Q ss_pred             hcCCceEEEEcCCccccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc---CCCceE
Q 011669          181 YTGCNDIISLRNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG---TSGHVA  256 (480)
Q Consensus       181 ~~~~~~ii~~~~~yhG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~---~~~~~a  256 (480)
                        ++++|++.+++||+.... .....            |...+.+|..   .+..|    .+++++.++..   ...+++
T Consensus        89 --~gd~vl~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~---~~~~d----~~~l~~~l~~~~~~~~~~~~  147 (359)
T 1svv_A           89 --PWEAVIATQLGHISTHETGAIEAT------------GHKVVTAPCP---DGKLR----VADIESALHENRSEHMVIPK  147 (359)
T ss_dssp             --TTEEEEEETTSHHHHSSTTHHHHT------------TCCEEEECCT---TSCCC----HHHHHHHHHHSCSTTSCEEE
T ss_pred             --CCCEEEEcccchHHHHHHHHHhcC------------CCeeEEEeCC---CCeec----HHHHHHHHHHHHhccCCCce
Confidence              678999999999987653 11111            2222222221   22234    67888888642   112488


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCc--cccCCCcccccccC--CCcceeee--ccccccCc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHG--VVPDIVTM--AKGIGNGI  330 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgf--gr~G~~~~~~~~~~--~~pDivt~--sK~~g~G~  330 (480)
                      +|+++++ +++|.+. +++++++|.++|++||+++|+||+|.+|  |..+ .  .....+  ..+|++++  +|. ++..
T Consensus       148 ~v~~~~~-~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~--~~~~~~~~~~~d~~~~s~~K~-g~~~  221 (359)
T 1svv_A          148 LVYISNT-TEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPV-N--DLTLADIARLTDMFYIGATKA-GGMF  221 (359)
T ss_dssp             EEEEESS-CTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT-C--CCCHHHHHHHCSEEEEECTTT-TCSS
T ss_pred             EEEEEcC-CCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCC-c--chhhhhhhhcCCEEEEecccC-CCCC
Confidence            8888887 5678765 5789999999999999999999999765  4443 1  111111  24677655  564 3335


Q ss_pred             cccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccc
Q 011669          331 PLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG  408 (480)
Q Consensus       331 pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g  408 (480)
                      ++|+++.++++++.+....  ...++..+....++..+.|+...-++..++.+++++++.+.| +. ..+..+.  ...+
T Consensus       222 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~-~~~~~~~--~~~~  297 (359)
T 1svv_A          222 GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EA-CGIRLAW--PSAS  297 (359)
T ss_dssp             CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HH-TTCCBSS--CCSS
T ss_pred             ceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-cc-CCeEEcc--CCcc
Confidence            6788888988876654321  223333232222222233321111345667777777777777 43 1222221  2334


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccC-cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGG-FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~-~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .++++.+.             ..+.+.|+++ ||++.+.. ...+++||++++.++++++++++++|++++++
T Consensus       298 ~~~~~~~~-------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  357 (359)
T 1svv_A          298 NQLFPILE-------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS  357 (359)
T ss_dssp             SEECBEEE-------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred             ceEEEEcC-------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence            55555541             3577888888 99984321 12468999999999999999999999998765

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.94  E-value=3.6e-26  Score=232.15  Aligned_cols=333  Identities=14%  Similarity=0.111  Sum_probs=218.2

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHh-ccc--ccccc--CChH---HHH-HHHHHHHhCCCCCCEEEEeCCHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQH--STVLY--LNHA---IAD-FAEALASKMPGNLKVVFFTNSGTE  169 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~-~~~--~~~~~--~~~~---~~~-l~e~L~~~~~~~~~~v~f~~sGse  169 (480)
                      ++|||+.+|....     +|+|.+|+.+++.+ ..+  ....+  ..+.   ..+ .+++++++++.+. ..+++++|++
T Consensus        23 ~~~i~~~~~~~~~-----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~-~~i~~~sGt~   96 (407)
T 2dkj_A           23 REGLELIASENFV-----SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW-ANVQPHSGSQ   96 (407)
T ss_dssp             HTSEECCTTCCCC-----CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHH
T ss_pred             hcceeeccCCCCC-----CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc-ceEEecchHH
Confidence            4678998887543     79999999998864 221  11111  1222   222 2248888886543 3356778999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCccccc--ccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNA--AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~--~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      |++.+++.+.  .++++|++.+++|++..  ...+...+..          +..++++.. ...+..|    .+++++.+
T Consensus        97 a~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~-~~~~~~d----~~~l~~~l  159 (407)
T 2dkj_A           97 ANMAVYMALM--EPGDTLMGMDLAAGGHLTHGSRVNFSGKL----------YKVVSYGVR-PDTELID----LEEVRRLA  159 (407)
T ss_dssp             HHHHHHHHHC--CTTCEEEEECGGGTCCGGGTCTTSHHHHH----------SEEEEECCC-TTTSSCC----HHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCEEEEecccccCccchHHHHHhcCce----------EEEEecCCC-cccCccC----HHHHHHHH
Confidence            9999999873  36789999999998763  2222222210          011221100 0112234    67788888


Q ss_pred             HccCCCceEEEEE-cccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC-ccccCCCcccccccCCCccee--eec
Q 011669          248 DFGTSGHVAGFLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEAHGVVPDIV--TMA  323 (480)
Q Consensus       248 ~~~~~~~~a~vi~-epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg-fgr~G~~~~~~~~~~~~pDiv--t~s  323 (480)
                      +..   ++++|++ +|++|   .+.+    +++|.++|++||+++|+||+|++ +...| ....  ..+ .+|++  +++
T Consensus       160 ~~~---~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~--~~~-~~di~~~s~s  225 (407)
T 2dkj_A          160 LEH---RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAG-LHPN--PLP-YAHVVTSTTH  225 (407)
T ss_dssp             HHH---CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTT-CSCC--CTT-TCSEEEEESS
T ss_pred             hhc---CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccC-ccCC--ccc-cccEEEEecc
Confidence            631   4567777 67764   3333    99999999999999999999986 54444 2211  111 26777  789


Q ss_pred             cccccCccccccccC-HHHHHhhcCCC-ccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669          324 KGIGNGIPLGAVVTT-PEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKY  398 (480)
Q Consensus       324 K~~g~G~pig~v~~~-~~~~~~l~~~~-~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~  398 (480)
                      |+++ |+++||++++ +++++.+.... ++.+.+.++..++++.++|+.+.+   +++.++.+++.+++.+.|+++  .+
T Consensus       226 K~l~-g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~  302 (407)
T 2dkj_A          226 KTLR-GPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR--GY  302 (407)
T ss_dssp             GGGC-CCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred             ccCC-CCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC--Cc
Confidence            9887 5678999999 89888775532 334445667777777888887543   456677777788888877765  22


Q ss_pred             CceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--------CCCEEEEeCCC----CCCHHHH
Q 011669          399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--------YGNVFRITPPL----CFTKEDA  466 (480)
Q Consensus       399 ~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~~~~iRi~p~~----~~t~~~i  466 (480)
                      ..+.. ++.|.++++.+....       .....+.+.|.++||++.++..        ..+++||+++.    .+|++++
T Consensus       303 ~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i  374 (407)
T 2dkj_A          303 RIVTG-GTDNHLFLVDLRPKG-------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEM  374 (407)
T ss_dssp             EEGGG-SCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGH
T ss_pred             eeecC-CCCceEEEEECcccC-------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHH
Confidence            22211 356888888874311       0145678888999999988632        24689999765    3799999


Q ss_pred             HHHHHHHHHHHhh
Q 011669          467 DYLVDVMDYSLSK  479 (480)
Q Consensus       467 d~~l~~l~~~l~~  479 (480)
                      ++++++|++++++
T Consensus       375 ~~~~~~l~~~~~~  387 (407)
T 2dkj_A          375 PLVAELIDRALLE  387 (407)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998753

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.94  E-value=1.1e-25  Score=229.01  Aligned_cols=324  Identities=12%  Similarity=0.078  Sum_probs=215.4

Q ss_pred             CCCCCHHHHHHHHHHHHhccc-cccccCChHHHHHHHHHHHhCCCCCCEEE-EeCCHHHHHHHHHHHHHhhcCCceEEEE
Q 011669          113 CGHCHPYVVDSIVNQIKRIQH-STVLYLNHAIADFAEALASKMPGNLKVVF-FTNSGTEANELAIMMARLYTGCNDIISL  190 (480)
Q Consensus       113 lGh~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~l~e~L~~~~~~~~~~v~-f~~sGseA~~~Alk~ar~~~~~~~ii~~  190 (480)
                      +|++++.+.+++.+++.+... .......+...+++++|+++++.+.+.++ +++||++|++.+++.+  ..++++|++.
T Consensus        15 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~~   92 (416)
T 3isl_A           15 MTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLIP   92 (416)
T ss_dssp             CSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred             ecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEEe
Confidence            455544455555554444211 11111245578999999999987666555 8999999999999876  3478899999


Q ss_pred             cCCccccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcc
Q 011669          191 RNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (480)
Q Consensus       191 ~~~yhG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  269 (480)
                      +++||+.... .....            |+..+.+|....+.  .|    .+++++.++.   +++++|+++++++++|.
T Consensus        93 ~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~--~d----~~~l~~~i~~---~~~~~v~~~~~~nptG~  151 (416)
T 3isl_A           93 IYGRFGYLLTEIAERY------------GANVHMLECEWGTV--FD----PEDIIREIKK---VKPKIVAMVHGETSTGR  151 (416)
T ss_dssp             ESSHHHHHHHHHHHHT------------TCEEEEEECCTTCC--CC----HHHHHHHHHH---HCCSEEEEESEETTTTE
T ss_pred             cCCcccHHHHHHHHhc------------CCeeEEEecCCCCC--CC----HHHHHHHHhh---CCCcEEEEEccCCCCce
Confidence            9999983321 11111            22222222111111  13    6788888863   25689999999999998


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccccccCHHHHHhhcC
Q 011669          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTR  347 (480)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~  347 (480)
                      +.+    +++|.++|++||+++|+||+|+ +|..   .+..+.+  .+|++  +++|+++++.++|++++++++++.+..
T Consensus       152 ~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~~--~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~  221 (416)
T 3isl_A          152 IHP----LKAIGEACRTEDALFIVDAVAT-IGGC---EVKVDEW--KIDAAIGGTQKCLSVPSGMAPITYNERVADVIAA  221 (416)
T ss_dssp             ECC----CHHHHHHHHHTTCEEEEECTTT-TTTS---CCCTTTT--TCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHT
T ss_pred             ecC----HHHHHHHHHHcCCEEEEECCcc-ccCC---Ccchhhc--CCCEEEecCccccCCCCCeEEEEECHHHHHHhhc
Confidence            876    9999999999999999999997 3322   1122223  35666  456998888889999999998877653


Q ss_pred             CC--------------------------------------ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHH
Q 011669          348 RN--------------------------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSY  386 (480)
Q Consensus       348 ~~--------------------------------------~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~  386 (480)
                      ..                                      .....+.|..++++..++++.+.+.   ++.++.+++.++
T Consensus       222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~  301 (416)
T 3isl_A          222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA  301 (416)
T ss_dssp             C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            11                                      1123345677788888888876553   667777888888


Q ss_pred             HHHHHHHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccC--cCCCEEEEeCCCCCC
Q 011669          387 LKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGG--FYGNVFRITPPLCFT  462 (480)
Q Consensus       387 l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p~~~~t  462 (480)
                      +.+.|+++  .+...... ...+.++++.+...        .....+.+.|.++ ||.+.++.  ..++++||+++...+
T Consensus       302 l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~  371 (416)
T 3isl_A          302 LAAGIKAM--GLRLFGDDSCKMPVVTCVEIPGG--------IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSC  371 (416)
T ss_dssp             HHHHHHHT--TCCBCSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGC
T ss_pred             HHHHHHHc--CCEeccCccccCCcEEEEeCCCC--------CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCC
Confidence            88888774  33222111 11256677766321        1246788888877 99998763  235799999866556


Q ss_pred             HHH-HHHHHHHHHHHHhh
Q 011669          463 KED-ADYLVDVMDYSLSK  479 (480)
Q Consensus       463 ~~~-id~~l~~l~~~l~~  479 (480)
                      +++ +++++++|++++++
T Consensus       372 ~~e~i~~~~~~l~~~~~~  389 (416)
T 3isl_A          372 RKENVLFVLAGLEAVLLR  389 (416)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            666 99999999998865

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.94  E-value=2.1e-26  Score=238.60  Aligned_cols=349  Identities=13%  Similarity=0.089  Sum_probs=210.2

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      |+.||||.++.++       |+|.+++.+++....   ..| ..+...+|+++|+++++  .++++|++||+|||+.|++
T Consensus        40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~---~~y~~~~~~~~l~~~la~~~~--~~~v~~t~~gt~A~~~al~  107 (467)
T 2oqx_A           40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGD---EAYSGSRSYYALAESVKNIFG--YQYTIPTHQGRGAEQIYIP  107 (467)
T ss_dssp             GGCSEECSCCSSC-------SCCCHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHHC--CSEEEEEC--CCSHHHHHH
T ss_pred             CCeeEecccCCCc-------HHHHHHHHHHhccCc---ceeccCchhHHHHHHHHHHhC--cCcEEEcCCcHHHHHHHHH
Confidence            6689999887654       889999888775421   223 35778899999999995  4789999999999999999


Q ss_pred             HHHhhc----C--C-ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC--CCCCCChHHHHHHHHHHH
Q 011669          177 MARLYT----G--C-NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR--GVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       177 ~ar~~~----~--~-~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~--~~~~~d~~~~~~~le~~i  247 (480)
                      +++..+    |  + +.|+..  .||+.+.............     .++....++....  ..+..|    +++|++++
T Consensus       108 ~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d----~~~Le~~i  176 (467)
T 2oqx_A          108 VLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVR-----NVYIKEAFDTGVRYDFKGNFD----LEGLERGI  176 (467)
T ss_dssp             HHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEE-----ECBCTTTTCTTSCCTTTTCBC----HHHHHHHH
T ss_pred             HHhccccccCCCCccceEEec--ccccccchhhhhccCccee-----eccccccccCCCCCCccCCcC----HHHHHHHH
Confidence            988652    4  2 556654  5786543222211100000     0100001111000  011123    67888888


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC----------ccccCCCccccc--ccCC
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----------FARTGSHFWGFE--AHGV  315 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg----------fgr~G~~~~~~~--~~~~  315 (480)
                      +....+++++|++++++|++|..+++.+++++|+++|++||++||+|++|..          .+..|.....+.  .. .
T Consensus       177 ~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~  255 (467)
T 2oqx_A          177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-K  255 (467)
T ss_dssp             HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-G
T ss_pred             HhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-c
Confidence            7422136899999999988644556889999999999999999999976642          133331111110  00 1


Q ss_pred             Ccce--eeeccccccCccc-cccccCHH-HHH---hhcCC----CccccCCCcHHHHHHHH-HHHHHhhhhHHHHHHHHH
Q 011669          316 VPDI--VTMAKGIGNGIPL-GAVVTTPE-IAE---VLTRR----NYFNTFGGNPVCTAAGH-AVLKVIQKDKLQNNAHVV  383 (480)
Q Consensus       316 ~pDi--vt~sK~~g~G~pi-g~v~~~~~-~~~---~l~~~----~~~~t~~~~~~~~aaa~-a~L~~i~~~~~~~~~~~~  383 (480)
                      .+|+  .+++|+++  .|+ |+++++++ +++   .+...    ....++++......+++ ..++...+++..++..++
T Consensus       256 ~~d~~~~s~sK~~g--~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~  333 (467)
T 2oqx_A          256 YADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQ  333 (467)
T ss_dssp             GCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCeEEEecccccC--CCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHH
Confidence            1343  56788885  344 45666755 333   33221    11123333333222222 222322223455666778


Q ss_pred             HHHHHHHHHHhHHhcCceeeEeccceeEEEEEec--CCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC-----------
Q 011669          384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT--DRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY-----------  449 (480)
Q Consensus       384 ~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~-----------  449 (480)
                      ++++++.|+++  .++.+   ...|.++++.+..  ....  ........+.+.| .++||.+.+++.+           
T Consensus       334 ~~~l~~~L~~~--~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~  406 (467)
T 2oqx_A          334 VQYLVDGLEEI--GVVCQ---QAGGHAAFVDAGKLLPHIP--ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQ  406 (467)
T ss_dssp             HHHHHHHHHHT--TCCEE---EECSSCEEEEHHHHSTTSC--GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSB
T ss_pred             HHHHHHHHHHC--CCeee---cCCceEEEEechhhcccCC--cccccHHHHHHHHHHhcCceeccccccccccccccccc
Confidence            88888888876  34433   3346677777632  1110  1110145567888 8899999875421           


Q ss_pred             ----CCEEEEeCCCC-CCHHHHHHHHHHHHHHHhh
Q 011669          450 ----GNVFRITPPLC-FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       450 ----~~~iRi~p~~~-~t~~~id~~l~~l~~~l~~  479 (480)
                          .+++||+++.. +|+++|++++++|++++++
T Consensus       407 ~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~  441 (467)
T 2oqx_A          407 LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             CCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred             ccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence                27899999988 9999999999999998864

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.94  E-value=2.7e-26  Score=227.91  Aligned_cols=317  Identities=15%  Similarity=0.084  Sum_probs=217.5

Q ss_pred             CCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC--CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcC
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN  192 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~--~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~  192 (480)
                      ..+|+|.+|+.+++..  |.. ....+...+++++|+++++.+  .+++++++||++|++.+++.++   + ++|++.++
T Consensus        10 ~~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---~-d~vl~~~~   82 (353)
T 2yrr_A           10 PIPERVQKALLRPMRG--HLD-PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---R-GPVLVLVN   82 (353)
T ss_dssp             CCCHHHHGGGGSCCCC--TTC-HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---C-CCEEEEEC
T ss_pred             CCCHHHHHHHhccccc--ccC-HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---C-CcEEEEcC
Confidence            3579999998876643  211 011345789999999998764  5789999999999999998654   3 78999999


Q ss_pred             Cccccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCccee
Q 011669          193 AYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (480)
Q Consensus       193 ~yhG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~  271 (480)
                      +||+.... .....+.          .+..++.+.    .+..|    .+++++.++..   ++++|+++++++++|.+.
T Consensus        83 ~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~---~~~~v~~~~~~nptG~~~  141 (353)
T 2yrr_A           83 GAFSQRVAEMAALHGL----------DPEVLDFPP----GEPVD----PEAVARALKRR---RYRMVALVHGETSTGVLN  141 (353)
T ss_dssp             SHHHHHHHHHHHHTTC----------CEEEEECCT----TSCCC----HHHHHHHHHHS---CCSEEEEESEETTTTEEC
T ss_pred             CCchHHHHHHHHHcCC----------ceEEEeCCC----CCCCC----HHHHHHHHHhC---CCCEEEEEccCCCcceec
Confidence            99986111 1111111          122233221    11123    67888888642   567888999999999887


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHHhhcC--
Q 011669          272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTR--  347 (480)
Q Consensus       272 ~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~~l~~--  347 (480)
                      +    +++|.++|++||+++|+||+|. +|...   .....++  +|+++  ++|.++++.++|++++++++++.+..  
T Consensus       142 ~----~~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~  211 (353)
T 2yrr_A          142 P----AEAIGALAKEAGALFFLDAVTT-LGMLP---FSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKR  211 (353)
T ss_dssp             C----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCS
T ss_pred             C----HHHHHHHHHHcCCeEEEEcCcc-ccccc---ccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCC
Confidence            6    9999999999999999999994 65432   2222233  56665  56988876668999999999887751  


Q ss_pred             C-------------CccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeE
Q 011669          348 R-------------NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL  411 (480)
Q Consensus       348 ~-------------~~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  411 (480)
                      .             .....++.|+.+++++.++|+.+.++   +..++.+++.+++++.|+++  .+.........+.++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~  289 (353)
T 2yrr_A          212 GWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVL  289 (353)
T ss_dssp             CSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEE
T ss_pred             CccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEE
Confidence            0             11223455777888888888876543   45677777788888887764  222221111145566


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHH-HHHHHHHHHHhh
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDAD-YLVDVMDYSLSK  479 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id-~~l~~l~~~l~~  479 (480)
                      ++.+...        .....+.+.|.++||.+.++..  ..+++||+++...++++++ +++++|+++++.
T Consensus       290 ~~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          290 VVRPPEG--------VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             EEECCTT--------CCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCC--------CCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            7766211        1145688899999999987642  2468999987778999999 999999998864

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.94  E-value=6.2e-26  Score=225.56  Aligned_cols=315  Identities=17%  Similarity=0.108  Sum_probs=214.1

Q ss_pred             CCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y  194 (480)
                      ..+|+|++|+.+++..  +. .....+...+++++|+++++.+.+++++++||++|++.+++.+.  .++++|++.+++|
T Consensus        11 ~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~~~   85 (352)
T 1iug_A           11 RLHPKALEALARPQLH--HR-TEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--APGERVLVPVYGK   85 (352)
T ss_dssp             CCCHHHHHHHHSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--CTTCEEEEEECSH
T ss_pred             CCCHHHHHHhccCCCC--cc-CHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--CCCCeEEEEeCCc
Confidence            3679999999876642  11 11123456889999999997766789999999999999999774  3668999999999


Q ss_pred             ccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCC
Q 011669          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (480)
Q Consensus       195 hG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  274 (480)
                      ++.. .......          .|+..+.+|....+.  .|    .+++++       +++++|+++++++++|.+.+  
T Consensus        86 ~~~~-~~~~~~~----------~g~~~~~v~~~~~~~--~d----~~~l~~-------~~~~~v~~~~~~nptG~~~~--  139 (352)
T 1iug_A           86 FSER-FYEIALE----------AGLVVERLDYPYGDT--PR----PEDVAK-------EGYAGLLLVHSETSTGALAD--  139 (352)
T ss_dssp             HHHH-HHHHHHH----------TTCEEEEEECCTTCC--CC----TTTSCC-------SSCSEEEEESEETTTTEECC--
T ss_pred             hhHH-HHHHHHH----------cCCceEEEeCCCCCC--CC----HHHHhc-------cCCcEEEEEEecCCcceecC--
Confidence            9865 1111100          022222221111111  12    223332       25678899999999998876  


Q ss_pred             ChHHHHHHHHHHh--CCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccccccccCHHHHHhhcC---
Q 011669          275 GYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTR---  347 (480)
Q Consensus       275 ~~l~~l~~l~~~~--gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~---  347 (480)
                        +++|.++|++|  |+++|+||+|+ +|...   +....+  .+|++  +++|+++++.++|++++++++++.+..   
T Consensus       140 --l~~i~~l~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~  211 (352)
T 1iug_A          140 --LPALARAFKEKNPEGLVGADMVTS-LLVGE---VALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGY  211 (352)
T ss_dssp             --HHHHHHHHHHHCTTCEEEEECTTT-BTTBC---CCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSS
T ss_pred             --HHHHHHHHHhhCCCCEEEEECCcc-ccCcc---eecccc--CeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCc
Confidence              99999999999  99999999996 54321   222222  35666  456988876678999999987755211   


Q ss_pred             -----------CCccccCCCcHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEE
Q 011669          348 -----------RNYFNTFGGNPVCTAAGHAVLKVIQKD--KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE  414 (480)
Q Consensus       348 -----------~~~~~t~~~~~~~~aaa~a~L~~i~~~--~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  414 (480)
                                 ......++.|+.+++++.++|+.+.++  +..++.+++.+++.+.|+++  .+...... ..+.++++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~-~~~~~~~~~  288 (352)
T 1iug_A          212 YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG--GLRPVPKR-FSPAVAAFY  288 (352)
T ss_dssp             TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT--TCEESCSS-BCTTCEEEE
T ss_pred             eeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcccccc-cCCeEEEEE
Confidence                       011234456788888888888876553  56667777777777777664  22211110 256778887


Q ss_pred             EecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +...        .....+.+.|.++||.+.++..  ..+++||+++...|++++++++++|++++++
T Consensus       289 ~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  347 (352)
T 1iug_A          289 LPEG--------VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE  347 (352)
T ss_dssp             CCTT--------CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCC--------CCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence            6321        1145688889999999988642  2478999999888999999999999998765

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.94  E-value=3.4e-25  Score=222.73  Aligned_cols=327  Identities=14%  Similarity=0.076  Sum_probs=217.8

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-ccccccC-----ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYL-----NHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~~-----~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~  173 (480)
                      .|||+.++      |+.+|+|.+|+.+++.+.. +....|.     .+...+++++++++++.+.+++++++||++|++.
T Consensus         2 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~   75 (382)
T 4eb5_A            2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL   75 (382)
T ss_dssp             CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHH
T ss_pred             eeeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHH
Confidence            37887654      4789999999999987632 1111121     3467889999999997766789999999999999


Q ss_pred             HHHHHHhh--cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          174 AIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       174 Alk~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      +++.+...  .+++.|++.+++|++.......+..          .|...+.+|...  .+..|    .+++++.++   
T Consensus        76 ~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~---  136 (382)
T 4eb5_A           76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGK--YGEVD----VSFIDQKLR---  136 (382)
T ss_dssp             HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTT----------TTCEEEEECBCT--TSCBC----HHHHHHHCC---
T ss_pred             HHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHh----------CCcEEEEeccCC--CCccC----HHHHHHHhc---
Confidence            99987621  3567899999999876554432211          122222222111  11123    577887774   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccC
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG  329 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G  329 (480)
                       +++++|+++++++++|.+.+    +++|.++|++||++ |+||+|+ +|...   +.....  .+|++  +++|.+|. 
T Consensus       137 -~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~---~~~~~~--~~di~~~s~sK~~g~-  203 (382)
T 4eb5_A          137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE---VDVEKI--GADMLTISSNDIYGP-  203 (382)
T ss_dssp             -TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC---CCHHHH--TCSEEEEETGGGTCC-
T ss_pred             -CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc---cCcccc--CCCEEEeehHHhcCC-
Confidence             26889999999999998876    89999999999999 9999997 54321   122222  35666  56797552 


Q ss_pred             ccccccccCHHHHHhhcCCC-------ccccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          330 IPLGAVVTTPEIAEVLTRRN-------YFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~-------~~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      .++|+++++++.  .+....       .....+.++..++++.++++.+.+  +...++.+++.+++.+.|+++    +.
T Consensus       204 ~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~  277 (382)
T 4eb5_A          204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EE  277 (382)
T ss_dssp             SSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TT
T ss_pred             CceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC----CC
Confidence            237899888763  122211       112334566777777788887654  244555556666666665543    32


Q ss_pred             eeeEec----cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---------------------CCCEEEE
Q 011669          401 IGDVRG----RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---------------------YGNVFRI  455 (480)
Q Consensus       401 ~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi  455 (480)
                      +.....    .+.++++.+...         ....+.+.|.++||.+.++..                     ..+++||
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi  348 (382)
T 4eb5_A          278 SYLNGHPEKRLPNNVNVRFSYI---------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLL  348 (382)
T ss_dssp             EEECSCSSSBCTTEEEEEETTS---------CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEE
T ss_pred             eEEeCCcccCCCCEEEEEeCCc---------CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEE
Confidence            222222    255667766310         145688888899999987642                     1468999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          456 TPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++..+|++++++++++|++++++
T Consensus       349 ~~~~~~~~~~i~~~~~~l~~~~~~  372 (382)
T 4eb5_A          349 TLGRYNTDEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHH
Confidence            988888999999999999998764

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.94  E-value=4.1e-25  Score=221.72  Aligned_cols=327  Identities=14%  Similarity=0.081  Sum_probs=216.1

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-ccc-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL  173 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~  173 (480)
                      .|||+.++      ++.+|.|.+++.+++.+... ...     .+..+...+++++++++++.+.+++++++||++|++.
T Consensus         2 iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~   75 (382)
T 4hvk_A            2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL   75 (382)
T ss_dssp             CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHH
T ss_pred             EeecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHH
Confidence            37787654      36789999999999876421 111     1224556789999999998777789999999999999


Q ss_pred             HHHHHHhh--cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          174 AIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       174 Alk~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      +++.+...  .+++.|++.++.|++.......+..          .|+....+|...  .+..|    .+++++.++   
T Consensus        76 ~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~---  136 (382)
T 4hvk_A           76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGK--YGEVD----VSFIDQKLR---  136 (382)
T ss_dssp             HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHH----------TTCEEEEECBCT--TSCBC----HHHHHHHCC---
T ss_pred             HHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHh----------cCCEEEEeccCC--CCCcC----HHHHHHHhc---
Confidence            99976521  3678899999999876654433211          122222222111  11123    677887774   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccC
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG  329 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G  329 (480)
                       +++++|+++++++++|.+.+    +++|.++|++||+ +|+||+|+ +|..   .+..+..+  +|++  +++|.+| +
T Consensus       137 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~---~~~~~~~~--~d~~~~s~~K~~g-~  203 (382)
T 4hvk_A          137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI---EVDVEKIG--ADMLTISSNDIYG-P  203 (382)
T ss_dssp             -TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB---CCCHHHHT--CSEEEEESGGGTS-C
T ss_pred             -cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC---CCCchhcC--CCEEEEeHHHhcC-C
Confidence             36889999999999998876    9999999999999 99999986 3321   12222233  4555  5669654 3


Q ss_pred             ccccccccCHHHHHhhcCCCc-------cccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          330 IPLGAVVTTPEIAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~-------~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      .++|+++++++.  .+.....       ......++.++++..++++.+.+  ++..++.+++.+++.+.|+++    +.
T Consensus       204 ~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~  277 (382)
T 4hvk_A          204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EE  277 (382)
T ss_dssp             TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TT
T ss_pred             CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----CC
Confidence            357888877654  2322211       12334567888888888876543  345556666666666665543    32


Q ss_pred             eeeEec----cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---------------------CCEEEE
Q 011669          401 IGDVRG----RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---------------------GNVFRI  455 (480)
Q Consensus       401 ~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi  455 (480)
                      +.....    .+.++.+.+...         ....+.+.|.++||.+.++..+                     .+++||
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl  348 (382)
T 4hvk_A          278 SYLNGHPEKRLPNNVNVRFSYI---------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLL  348 (382)
T ss_dssp             EEECSCSSSBCTTEEEEEETTC---------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEE
T ss_pred             eEEeCCccccCCCEEEEEECCC---------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEE
Confidence            222211    123555555211         1456788899999999876321                     478999


Q ss_pred             eCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          456 TPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       456 ~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++..+|++|+++++++|++++++
T Consensus       349 ~~~~~~t~e~i~~~~~~l~~~~~~  372 (382)
T 4hvk_A          349 TLGRYNTDEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999889999999999999998764

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.94  E-value=2.1e-26  Score=242.42  Aligned_cols=343  Identities=13%  Similarity=0.029  Sum_probs=209.2

Q ss_pred             cccCCCCCHHHHHHHHHHHHhcccc-ccccCChHHHHHHHHHHHh----CCCC-CCEEEEeCCHHHHHHHHHHHHH---h
Q 011669          110 TVCCGHCHPYVVDSIVNQIKRIQHS-TVLYLNHAIADFAEALASK----MPGN-LKVVFFTNSGTEANELAIMMAR---L  180 (480)
Q Consensus       110 ~~~lGh~~p~v~~A~~~~~~~~~~~-~~~~~~~~~~~l~e~L~~~----~~~~-~~~v~f~~sGseA~~~Alk~ar---~  180 (480)
                      ....++.+|++++++.+++....+. ...+.......+++.+.+.    .+.. .++|++|+||++|+..+++...   .
T Consensus       110 ~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l  189 (533)
T 3f6t_A          110 HTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHL  189 (533)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc
Confidence            3344567899999998888764333 2223344555666666554    1221 3689999999999999998631   1


Q ss_pred             hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEE
Q 011669          181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS  260 (480)
Q Consensus       181 ~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~  260 (480)
                      ..+++.|++.+++|++..........           .+..++++......|+.|    .++|+++++    .++++|++
T Consensus       190 ~~~gd~Viv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~~~d----~~~l~~~l~----~~~k~v~l  250 (533)
T 3f6t_A          190 LKKGDKIAINEPIFTPYLRIPELKDY-----------ELVEVDLHSYEKNDWEIE----PNEIEKLKD----PSIKALIV  250 (533)
T ss_dssp             SCTTCEEEEESSCCHHHHTSGGGGGS-----------EEEEECCCEETTTTSEEC----HHHHHHHSC----TTEEEEEE
T ss_pred             cCCcCEEEEcCCCcHHHHHHHHHcCC-----------eEEEEEecCCcccCCCCC----HHHHHHHhC----CCCeEEEE
Confidence            23568999999999987655443221           222232211001122223    567777764    36777777


Q ss_pred             cccCCCCcceeCCCChHHHHHHHHH-HhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCccccccccC
Q 011669          261 ESIQGVGGIIELAPGYLPAVYKSIK-KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTT  338 (480)
Q Consensus       261 epi~~~~G~~~~~~~~l~~l~~l~~-~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v~~~  338 (480)
                      +..+|++|.+. +.+.+++|.++|+ +||+++|+||+|.+|...+..+.. ...+....+.||||.+| .|+|+||++++
T Consensus       251 ~~p~NPtG~~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~RiG~l~~~  328 (533)
T 3f6t_A          251 VNPTNPTSKEF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYS-VVPYNTMLVYSYSKLFGCTGWRLGVIALN  328 (533)
T ss_dssp             ESSCTTTCBCC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHH-HSGGGEEEEEESHHHHTCGGGCEEEEEEE
T ss_pred             eCCCCCCcccc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhh-cCCCCEEEEecCcccCCCcccceEEEEEC
Confidence            67678888765 7778899999999 689999999999988764422221 12234456779999999 79999999998


Q ss_pred             HH-----HHHhh--------------------------------cCCCccccCCCcHHHHHH----HHHHHHH----hhh
Q 011669          339 PE-----IAEVL--------------------------------TRRNYFNTFGGNPVCTAA----GHAVLKV----IQK  373 (480)
Q Consensus       339 ~~-----~~~~l--------------------------------~~~~~~~t~~~~~~~~aa----a~a~L~~----i~~  373 (480)
                      ++     +++.+                                .......+.+.+++++.+    ++++|..    -..
T Consensus       329 ~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~  408 (533)
T 3f6t_A          329 EKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSD  408 (533)
T ss_dssp             SSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTB
T ss_pred             cHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccch
Confidence            77     44333                                333344566777777766    3344420    001


Q ss_pred             hH----HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCC--------HHHHHHH-HHHHHHcC
Q 011669          374 DK----LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA--------KAETLYI-MDKMKEMG  440 (480)
Q Consensus       374 ~~----~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~--------~~~~~~~-~~~l~~~G  440 (480)
                      +.    ..++++++.+++.+.|.     .+........|+++|+++..-.......        ......+ .+.+.++|
T Consensus       409 ~~~~~~~~~~~~~r~~~l~~~L~-----~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~G  483 (533)
T 3f6t_A          409 DPYIDIARKLVSERYDQLHDAMQ-----APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNG  483 (533)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT-----CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-----CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCC
Confidence            12    23333333334433332     3322223345667777763200000000        0012234 34455789


Q ss_pred             ceeeccCcC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          441 VLVGKGGFY---GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       441 v~v~~~~~~---~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |++.++..+   .+++||+.. ..+++++++++++|.+++++
T Consensus       484 V~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~  524 (533)
T 3f6t_A          484 VVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKE  524 (533)
T ss_dssp             SSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHH
Confidence            999987433   468999963 36899999999999998764

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.94  E-value=1.2e-25  Score=223.78  Aligned_cols=328  Identities=15%  Similarity=0.092  Sum_probs=208.4

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~  177 (480)
                      ...+|||.++.    .++.+|+|++|+.+++..  +.......+...+++++|+++++ ...+++|++||++|++.+++.
T Consensus         6 ~~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~   78 (356)
T 1v72_A            6 RPPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSA   78 (356)
T ss_dssp             CCCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHT
T ss_pred             CCceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHH
Confidence            34689998753    368999999999987632  22222246778899999999987 334689999999999999997


Q ss_pred             HHhhcCCceEEEEcCCcccccccc--cccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHH-HHHcc---C
Q 011669          178 ARLYTGCNDIISLRNAYHGNAAGT--MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD-LIDFG---T  251 (480)
Q Consensus       178 ar~~~~~~~ii~~~~~yhG~~~~~--~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~-~i~~~---~  251 (480)
                      ++.  +++.|++..++| +.....  +.....          |...+.+|..   .+..|    .+++++ .++..   .
T Consensus        79 ~~~--~gd~vi~~~~~~-~~~~~~~~~~~~~~----------g~~~~~v~~~---~~~~d----~~~l~~~~i~~~~~~~  138 (356)
T 1v72_A           79 MTP--PWGNIYCHPASH-INNDECGAPEFFSN----------GAKLMTVDGP---AAKLD----IVRLRERTREKVGDVH  138 (356)
T ss_dssp             SCC--TTEEEEECTTSH-HHHSSTTHHHHHTT----------SCEEEECCCG---GGCCC----HHHHHHHTTSSTTCTT
T ss_pred             hcC--CCCEEEEcCccc-hhhhhchHHHHHhC----------CcEEEEecCC---CCeEc----HHHHHHHhhhcchhhc
Confidence            653  556677766554 433322  222100          2222233321   12223    577887 77531   1


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcc--ccCCCcccccccC--CCccee--eeccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA--RTGSHFWGFEAHG--VVPDIV--TMAKG  325 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg--r~G~~~~~~~~~~--~~pDiv--t~sK~  325 (480)
                      ..++++|++++.++ +|.+ ++.+++++|.++|++||+++|+||+|..+.  ..|...   ...+  ...|++  +++|+
T Consensus       139 ~~~~~~v~~~~~~~-tG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~~~~~~~~d~~~~s~sK~  213 (356)
T 1v72_A          139 TTQPACVSITQATE-VGSI-YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP---AEMTWKAGVDALSFGATKN  213 (356)
T ss_dssp             SCEEEEEEEESSCT-TSCC-CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT---TTTTGGGTCCEEEECCGGG
T ss_pred             cCCceEEEEEcCCC-CCcc-CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH---HHhhhhhcCCEEEEecccC
Confidence            12689999998764 7765 578899999999999999999999997542  112111   1111  134554  46787


Q ss_pred             cccCcccc--ccccCHHHHHhhcCCC-ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          326 IGNGIPLG--AVVTTPEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       326 ~g~G~pig--~v~~~~~~~~~l~~~~-~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                         |.|+|  ++++++++++.+.... +.++....  +..++.++++.++++   ++.++.+++.+++++.|+++    +
T Consensus       214 ---g~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~  284 (356)
T 1v72_A          214 ---GVLAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL----G  284 (356)
T ss_dssp             ---TCSSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC----T
T ss_pred             ---CCcCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC----C
Confidence               44777  7878888887654321 11222221  122333445555443   24455566666666666543    2


Q ss_pred             ceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          400 IIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       400 ~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+.. ....+.++++.+.             ..+.+.|.++||.+.++....+++||++++.+|++++++++++|+++++
T Consensus       285 g~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  351 (356)
T 1v72_A          285 GVEVLGGTEANILFCRLD-------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAAD  351 (356)
T ss_dssp             TEEEESCCCSSEEEEEEC-------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred             CcEEccCCCccEEEEEcC-------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            2222 2344666777661             2578888999999987642257999999999999999999999998765


Q ss_pred             h
Q 011669          479 K  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       352 ~  352 (356)
T 1v72_A          352 R  352 (356)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.94  E-value=6.4e-26  Score=229.75  Aligned_cols=334  Identities=15%  Similarity=0.089  Sum_probs=198.8

Q ss_pred             EEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc------ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCC
Q 011669           93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ------HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNS  166 (480)
Q Consensus        93 l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~------~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~s  166 (480)
                      .++.++..|||+.+..      ..+|+|.+++.+++.+..      +....+..+...+++++|+++++.+.++|++++|
T Consensus        15 ~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g   88 (400)
T 3vax_A           15 VPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG   88 (400)
T ss_dssp             -------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC
T ss_pred             CcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC
Confidence            4567788899987543      568999999999987531      1111223455788999999999877778999999


Q ss_pred             HHHHHHHHHHHHHhh--cCCc-eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHH
Q 011669          167 GTEANELAIMMARLY--TGCN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV  243 (480)
Q Consensus       167 GseA~~~Alk~ar~~--~~~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l  243 (480)
                      |++|++.+++.+..+  .+++ .|++.++.|++.......+..          .|...+.+|...  .+..|    .+++
T Consensus        89 ~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l  152 (400)
T 3vax_A           89 ATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAG----------RGFEVDFLTPGP--SGRIS----VEGV  152 (400)
T ss_dssp             HHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHT----------TTCEEEEECCCT--TCCCC----HHHH
T ss_pred             HHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHh----------cCCeEEEEccCC--CCCcC----HHHH
Confidence            999999999976521  2567 899988888765544333211          122222222211  12123    5677


Q ss_pred             HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee-
Q 011669          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM-  322 (480)
Q Consensus       244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~-  322 (480)
                      ++.++    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ ++...     .+..+. +|++++ 
T Consensus       153 ~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~-----~~~~~~-~d~~~~s  217 (400)
T 3vax_A          153 MERLR----PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP-----GDLTTP-IDMISIS  217 (400)
T ss_dssp             HTTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG-----GGGGSC-CSEEEEE
T ss_pred             HHhcC----CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC-----cChhhc-CcEEEEe
Confidence            77664    37899999999999998876    8999999999999999999997 33221     222234 787755 


Q ss_pred             -ccccccCccccccc-cCHH-HH---HhhcCCCc-------cccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHH
Q 011669          323 -AKGIGNGIPLGAVV-TTPE-IA---EVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYL  387 (480)
Q Consensus       323 -sK~~g~G~pig~v~-~~~~-~~---~~l~~~~~-------~~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l  387 (480)
                       +|.+ ++.++|+++ ++++ +.   ..+.....       ......++.++++..++++.+.+  +++.++.+++.+++
T Consensus       218 ~~K~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l  296 (400)
T 3vax_A          218 GHKIG-APKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRL  296 (400)
T ss_dssp             TGGGT-SCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             HHHhC-CCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence             5944 444578877 7651 11   12222111       12344567777777788887654  45666677777777


Q ss_pred             HHHHHHhHHhcCceeeEec----cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--------------
Q 011669          388 KERLTALKDKYGIIGDVRG----RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--------------  449 (480)
Q Consensus       388 ~~~L~~l~~~~~~~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--------------  449 (480)
                      .+.|+ +    +.+.....    .+.++++.+...         ....+.+.|. +||.+.++..+              
T Consensus       297 ~~~L~-~----~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~  361 (400)
T 3vax_A          297 LAGLA-S----TSFQVNGDQDHVVPHILNLSFEDV---------DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAM  361 (400)
T ss_dssp             HHHHT-T----TTCEECSCTTSBCTTEEEEECTTC---------CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTT
T ss_pred             HHhhC-C----CCEEEeCCcccCCCCEEEEEeCCC---------CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHc
Confidence            77665 2    22221111    234555554211         1456788888 99988775211              


Q ss_pred             -------CCEEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Q 011669          450 -------GNVFRITP-PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       450 -------~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~  479 (480)
                             .+++||++ +...|++++++++++|++++++
T Consensus       362 g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          362 GLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             TCCHHHHTSEEEEEEEEC--------------------
T ss_pred             CCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence                   37899999 8889999999999999998764

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.94  E-value=2.3e-25  Score=225.31  Aligned_cols=318  Identities=13%  Similarity=0.108  Sum_probs=215.9

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC-EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~-~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y  194 (480)
                      .+|+|.+|+.+++..  +. ..+......+++++|+++++.+.+ +|++++||++|++.+++.+.  .++++|++.+++|
T Consensus        29 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--~~gd~vl~~~~~~  103 (396)
T 2ch1_A           29 CSKRVLTAMTNTVLS--NF-HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--EEGDRVLIAVNGI  103 (396)
T ss_dssp             CCHHHHHHTTSCCCC--TT-CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--CTTCEEEEEESSH
T ss_pred             CCHHHHHHhcccccc--CC-ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--CCCCeEEEEcCCc
Confidence            568898888765422  11 112234578999999999987666 89999999999999999774  3678999999999


Q ss_pred             ccccc-cccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          195 HGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       195 hG~~~-~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      ++... ......+.          .+..++.+.    .+..|    .+++++.++..   ++++|+++++++++|.+.+ 
T Consensus       104 ~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~-  161 (396)
T 2ch1_A          104 WAERAVEMSERYGA----------DVRTIEGPP----DRPFS----LETLARAIELH---QPKCLFLTHGDSSSGLLQP-  161 (396)
T ss_dssp             HHHHHHHHHHHTTC----------EEEEEECCT----TSCCC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC-
T ss_pred             ccHHHHHHHHHcCC----------ceEEecCCC----CCCCC----HHHHHHHHHhC---CCCEEEEECCCCCCceecC-
Confidence            98631 11111111          122222211    12234    67788888631   4678888888889998876 


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--ccccccCccccccccCHHHHHhhcCCC--
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAEVLTRRN--  349 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g~G~pig~v~~~~~~~~~l~~~~--  349 (480)
                         +++|.++|++||+++|+||+|. +|...   ...+  ...+|++++  +|.++++.++|++++++++++.+....  
T Consensus       162 ---~~~i~~l~~~~~~~li~Dea~~-~g~~~---~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~  232 (396)
T 2ch1_A          162 ---LEGVGQICHQHDCLLIVDAVAS-LCGVP---FYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTK  232 (396)
T ss_dssp             ---CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred             ---HHHHHHHHHHcCCEEEEEcccc-ccCCc---cchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCc
Confidence               8899999999999999999997 65322   1222  234677765  499988778899999999887764210  


Q ss_pred             ---------------------ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          350 ---------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       350 ---------------------~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                                           ....++.+..+++++.++|+.+.++   +..++.+++.+++.+.|+++  .+..+....
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~  310 (396)
T 2ch1_A          233 SKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM--GLDIFVKDP  310 (396)
T ss_dssp             CSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSG
T ss_pred             ccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCc
Confidence                                 1122345677888888888876433   46677777788888888775  333221111


Q ss_pred             --ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCc--CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Q 011669          406 --GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGF--YGNVFRITP-PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       406 --g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~  479 (480)
                        ..+.++++.+...        .....+.+.|+++ ||.+.++..  ..+++||++ ++.++++++++++++|++++++
T Consensus       311 ~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~  382 (396)
T 2ch1_A          311 RHRLPTVTGIMIPKG--------VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA  382 (396)
T ss_dssp             GGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             cccCCceEEEEcCCC--------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence              1234667765211        1145688888775 999987632  357899998 5678999999999999998864

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.94  E-value=4.7e-26  Score=234.93  Aligned_cols=338  Identities=12%  Similarity=0.083  Sum_probs=207.4

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhcc----ccccccC-ChHHHHHHHHHHHhC-CCC-----CCEEEE--eCCH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ----HSTVLYL-NHAIADFAEALASKM-PGN-----LKVVFF--TNSG  167 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~----~~~~~~~-~~~~~~l~e~L~~~~-~~~-----~~~v~f--~~sG  167 (480)
                      .|||..|.+.-  .+++|.+.+++.+++.++.    +....|. .....++++.+++++ +.+     .++|++  |+||
T Consensus        51 ~i~l~~g~~~d--~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~gg  128 (448)
T 3meb_A           51 KVNLGVGAYRD--ESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSG  128 (448)
T ss_dssp             CEEESSCCCCC--TTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred             eEEeecccccC--CCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcH
Confidence            46666665421  1344444555544422221    2222333 345677888888876 433     468999  9999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCccccccccc----ccccCCCccccccCCCeeEecCCCCcCC-CCCCChHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM----GATAQSNWKFNVVQTGVHHALNPDPYRG-VFGADGEMYAKD  242 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~----~~~~~~~~~~~~~~~g~~~~~~p~~~~~-~~~~d~~~~~~~  242 (480)
                      ++|++.++.+.....+++.|++.+++|+++.....    ..             |...+.+|..... .|.-|    +++
T Consensus       129 t~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~-------------G~~v~~~~~~~~~~~~~~d----~e~  191 (448)
T 3meb_A          129 TGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKL-------------KVPYKEYTYLRKDGELEID----FSN  191 (448)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTT-------------TSCCEEECCBCTTSCSSBC----HHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhC-------------CCeEEEEeccccccCCCcC----HHH
Confidence            99999977665555577899999999987655443    22             2222222211011 12234    677


Q ss_pred             HHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--Cccccccc-CCCcc-
Q 011669          243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFEAH-GVVPD-  318 (480)
Q Consensus       243 le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~~~~~~~~-~~~pD-  318 (480)
                      +++.++.. +++++++++...+|++|.+ ++.+.+++|.++|++||+++|+||+|.+|++.+.  ..++.... +..++ 
T Consensus       192 l~~~l~~~-~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~  269 (448)
T 3meb_A          192 TKKDIQSA-PEKSIFLFHACAHNPSGID-FTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEV  269 (448)
T ss_dssp             HHHHHHHS-CTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCE
T ss_pred             HHHHHHhC-CCCcEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcE
Confidence            88888643 2346677777778888876 4778899999999999999999999999976541  11222211 22334 


Q ss_pred             --eeeeccccc-cCcccccc--cc--------C-H----HHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--------
Q 011669          319 --IVTMAKGIG-NGIPLGAV--VT--------T-P----EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--------  372 (480)
Q Consensus       319 --ivt~sK~~g-~G~pig~v--~~--------~-~----~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--------  372 (480)
                        +.+|||.+| .|+|+||+  ++        + +    ++++.+.......+.+.+.+++.++.++|+...        
T Consensus       270 i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~  349 (448)
T 3meb_A          270 LVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDN  349 (448)
T ss_dssp             EEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             EEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHH
Confidence              457999999 79999997  55        3 4    555555433334555677888888887765321        


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhcCc------eeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec
Q 011669          373 KDKLQNNAHVVGSYLKERLTALKDKYGI------IGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK  445 (480)
Q Consensus       373 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~------~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~  445 (480)
                      -+...++++++++++.+.|+++  ..+.      +... ...|++.++.+.            ...+...+.++||++.+
T Consensus       350 ~~~~~~~~~~~r~~l~~~L~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~ll~~~gV~v~~  415 (448)
T 3meb_A          350 VKEMSARIHRMRSLLHASLAKR--KTPGPGSKGTWDHILTAIGMFTFTGLT------------PEHVDYLKEKWSIYLVK  415 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT--TCCCSTTTCCCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh--CCCCcCcccccceeCCCceEEEecCCC------------HHHHHHHHHhCCEEEeC
Confidence            1233444555555555555543  1122      2222 234555554431            12333344678999988


Q ss_pred             cCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          446 GGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       446 ~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |.     .||+.. ..++++|++++++|++++++
T Consensus       416 G~-----gRis~a-~~~~~~i~~~~~~l~~~l~~  443 (448)
T 3meb_A          416 AG-----GRMSMC-GLTESNCDYVAEAIHDAVTK  443 (448)
T ss_dssp             GG-----GEEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred             CC-----cEEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence            64     288864 34778899999999999875

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.94  E-value=1e-24  Score=228.78  Aligned_cols=324  Identities=14%  Similarity=0.074  Sum_probs=208.6

Q ss_pred             CCCHHHHHHHHHHHHhcccccc--ccCC----hHHHHHHHHHHHhCCCCC--CEE--EEeCCHHHHHHHHHHHHHhhcC-
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTV--LYLN----HAIADFAEALASKMPGNL--KVV--FFTNSGTEANELAIMMARLYTG-  183 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~--~~~~----~~~~~l~e~L~~~~~~~~--~~v--~f~~sGseA~~~Alk~ar~~~~-  183 (480)
                      |+++.+.+++.+++........  ....    ....+++++++++++.+.  +++  +|++||++|++.+++.++...+ 
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~  186 (514)
T 3mad_A          107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA  186 (514)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence            5678888888877765422111  1112    234567778888886543  466  9999999999999999887541 


Q ss_pred             -----CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          184 -----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       184 -----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                           ++.|++..++|++....+.....           .+..++...    .+..|    .++|+++++    +++++|
T Consensus       187 ~~g~~~d~Vi~~~~~~~~~~~~~~~~G~-----------~v~~v~~~~----~~~~d----~~~Le~~i~----~~~~~v  243 (514)
T 3mad_A          187 TKGITAPEAVVPVSAHAAFDKAAQYFGI-----------KLVRTPLDA----DYRAD----VAAMREAIT----PNTVVV  243 (514)
T ss_dssp             HHCCSSCEEEEETTSCTHHHHHHHHHTC-----------EEEEECBCT----TSCBC----HHHHHHHCC----TTEEEE
T ss_pred             hcCCCCCeEEEeCccchHHHHHHHHcCC-----------eeEEeeeCC----CCCCC----HHHHHHHhc----cCCEEE
Confidence                 27899999999875544332211           223333221    12123    678888875    378899


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCc-----cccCC--CcccccccCCCcceeeeccccccCcc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF-----ARTGS--HFWGFEAHGVVPDIVTMAKGIGNGIP  331 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgf-----gr~G~--~~~~~~~~~~~pDivt~sK~~g~G~p  331 (480)
                      +++++++++|.+.+    +++|.++|++||+++|+||+|++|     ++.|.  ..+.+...++...+.+++|.+++|.+
T Consensus       244 ~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~  319 (514)
T 3mad_A          244 AGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKG  319 (514)
T ss_dssp             EEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSS
T ss_pred             EEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCC
Confidence            99999999998876    999999999999999999999986     33441  12333444553334456699888899


Q ss_pred             ccccccCHHHHHhhcCCC----c-----cccC--CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHh
Q 011669          332 LGAVVTTPEIAEVLTRRN----Y-----FNTF--GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDK  397 (480)
Q Consensus       332 ig~v~~~~~~~~~l~~~~----~-----~~t~--~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~  397 (480)
                      +|+++++++.........    .     ..++  +.+....++..++++.+..   +++.++..++.+++++.|+++   
T Consensus       320 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---  396 (514)
T 3mad_A          320 TSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI---  396 (514)
T ss_dssp             CEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred             eEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC---
Confidence            999998877654322100    0     0111  1122223334444444433   456677777777777777664   


Q ss_pred             cCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Q 011669          398 YGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPP-LCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       398 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~-~~~t~~~id~~l~~l~~~  476 (480)
                       +.+..+.....++++....         .....+.+.|.++||++ ++..+.+.+|++++ ..++++++++++++|+++
T Consensus       397 -~g~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~Gi~v-~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~  465 (514)
T 3mad_A          397 -PSLKILGDPLWVIAVASDE---------LNIYQVMEEMAGRGWRL-NGLHRPPAFHVALTLRHTEPGVVDRFLADLQDA  465 (514)
T ss_dssp             -TTCEESSCCSSEEEEECSS---------SCHHHHHHHHHTTTCBC-EEETTTTEEEEECCGGGGSTTHHHHHHHHHHHH
T ss_pred             -CCeEEeCCCeEEEEEeCCC---------CCHHHHHHHHHhcCCEe-ccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Confidence             2222222223355554311         11456888999999998 44334678999987 455679999999999998


Q ss_pred             Hhh
Q 011669          477 LSK  479 (480)
Q Consensus       477 l~~  479 (480)
                      +++
T Consensus       466 l~~  468 (514)
T 3mad_A          466 VAQ  468 (514)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.93  E-value=5.2e-25  Score=227.42  Aligned_cols=343  Identities=14%  Similarity=0.041  Sum_probs=216.4

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM  176 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk  176 (480)
                      .|+.||||.++.++..   -.+++.+++.    .. . ......+...+|+++|+++++.  +++++++||++|++.+++
T Consensus        40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~-~-~~y~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~al~  108 (456)
T 2ez2_A           40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MG-D-EAYAGSENFYHLERTVQELFGF--KHIVPTHQGRGAENLLSQ  108 (456)
T ss_dssp             GGGCSEECSCSSSCCC---CCHHHHHHHT----TC-C-CCSSSCHHHHHHHHHHHHHHCC--SEEEEESSHHHHHHHHHH
T ss_pred             cccceeeeccccCCcc---CCHHHHHHhh----cc-h-hhcccChhHHHHHHHHHHHhCC--CcEEEeCCcHHHHHHHHH
Confidence            4678999988876552   3577777764    11 1 1122467788999999999853  589999999999999998


Q ss_pred             HHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCc------CCC--CCCChHHHHHHHHHHHH
Q 011669          177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPY------RGV--FGADGEMYAKDVQDLID  248 (480)
Q Consensus       177 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~------~~~--~~~d~~~~~~~le~~i~  248 (480)
                      .+..  +++  |+..++||+.....+...+..            .+.++...      ..+  |+.|    .++|+++++
T Consensus       109 ~l~~--~gd--i~~~~~~~~~~~~~~~~~G~~------------~~~v~~~~~~~~~~~~~~~~~~d----~~~l~~~i~  168 (456)
T 2ez2_A          109 LAIK--PGQ--YVAGNMYFTTTRYHQEKNGAV------------FVDIVRDEAHDAGLNIAFKGDID----LKKLQKLID  168 (456)
T ss_dssp             HHCC--TTC--EEEESSCCHHHHHHHHHTTCE------------EEECBCGGGGCTTCCCSCTTCBC----HHHHHHHHH
T ss_pred             HhCC--CCC--EeccccccchhHHHHHHcCCE------------EEEecccccccccccccccCCCC----HHHHHHHHH
Confidence            7732  344  788999988765555444321            11111100      001  2224    678888886


Q ss_pred             ccCCCceEEEEEc-ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC----------ccccCCCcccc-cccCCC
Q 011669          249 FGTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----------FARTGSHFWGF-EAHGVV  316 (480)
Q Consensus       249 ~~~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg----------fgr~G~~~~~~-~~~~~~  316 (480)
                      ......+++|+++ |+|+++|.+ .+.+++++|.++|++||+++|+||+|+.          +.+.|..+..+ +..+..
T Consensus       169 ~~t~~~~~~v~l~~p~n~ptG~~-~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~  247 (456)
T 2ez2_A          169 EKGAENIAYICLAVTVNLAGGQP-VSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSY  247 (456)
T ss_dssp             HHCGGGEEEEEEESSBTTTTSBC-CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTT
T ss_pred             hccccceeEEEEeccCCCCCCcc-CCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhccc
Confidence            4322346888888 455588864 5888999999999999999999999984          34555211000 012334


Q ss_pred             cceeeec-ccccc-Ccccccccc-CHHHHHhhcCCC----ccccCC-CcHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHH
Q 011669          317 PDIVTMA-KGIGN-GIPLGAVVT-TPEIAEVLTRRN----YFNTFG-GNPVCTAA-GHAVLKVIQKDKLQNNAHVVGSYL  387 (480)
Q Consensus       317 pDivt~s-K~~g~-G~pig~v~~-~~~~~~~l~~~~----~~~t~~-~~~~~~aa-a~a~L~~i~~~~~~~~~~~~~~~l  387 (480)
                      +|++++| |.+++ | +.|++++ ++++++.+....    ...++. .++..+++ +.+.++.++ +++.++..++.+++
T Consensus       248 ~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l  325 (456)
T 2ez2_A          248 ADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYL  325 (456)
T ss_dssp             CSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Confidence            7888764 55543 5 5789988 688877654321    111222 24334344 555555443 45667777778888


Q ss_pred             HHHHHHhHHhcCceeeEeccceeEEEEEec--CCCcCCCCHHHHHHHHHHH-HHcCceeeccCc---------------C
Q 011669          388 KERLTALKDKYGIIGDVRGRGFLLGVEFVT--DRQLKTPAKAETLYIMDKM-KEMGVLVGKGGF---------------Y  449 (480)
Q Consensus       388 ~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~---------------~  449 (480)
                      ++.|+++  .++.+.  ...|.++++.+..  ....  ........+.+.| .++||.+.+.+.               .
T Consensus       326 ~~~L~~~--g~~~~~--p~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~  399 (456)
T 2ez2_A          326 GDKLKAA--GVPIVE--PVGGHAVFLDARRFCEHLT--QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPK  399 (456)
T ss_dssp             HHHHHHT--TCCBCS--SCCSSEEEEEHHHHTTTSC--GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCS
T ss_pred             HHHHhcC--CCcccc--CCCceEEEEEhHHhcCCCC--hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCC
Confidence            8887764  333222  2346777777632  1111  1100134456666 688998755321               1


Q ss_pred             CCEEEEeCCCC-CCHHHHHHHHHHHHHHHhh
Q 011669          450 GNVFRITPPLC-FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       450 ~~~iRi~p~~~-~t~~~id~~l~~l~~~l~~  479 (480)
                      .+++||+++.. ++++++++++++|++++++
T Consensus       400 ~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~  430 (456)
T 2ez2_A          400 LETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             CCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            36899999987 8999999999999998764

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.93  E-value=9.1e-25  Score=223.85  Aligned_cols=347  Identities=16%  Similarity=0.158  Sum_probs=210.8

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-ccccccC-----ChHHHHHHHHHHHhCCCCCCEEEEeCCHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYL-----NHAIADFAEALASKMPGNLKVVFFTNSGTE  169 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~~-----~~~~~~l~e~L~~~~~~~~~~v~f~~sGse  169 (480)
                      .+|..|||+.++.      +.+|+|++|+.+++.... +....|.     .+...+++++|+++++.+.++|+|++||+|
T Consensus        16 ~~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~   89 (432)
T 3a9z_A           16 PNRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTE   89 (432)
T ss_dssp             --CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHH
T ss_pred             CCCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHH
Confidence            3578899976542      678999999999987632 1111221     234578999999999876678999999999


Q ss_pred             HHHHHHHHHHh-h-----cCCceEEEEcCCcccccccccccccCCCc----cccccCCCeeEecCCCCcCCCCCCChHHH
Q 011669          170 ANELAIMMARL-Y-----TGCNDIISLRNAYHGNAAGTMGATAQSNW----KFNVVQTGVHHALNPDPYRGVFGADGEMY  239 (480)
Q Consensus       170 A~~~Alk~ar~-~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~----~~~~~~~g~~~~~~p~~~~~~~~~d~~~~  239 (480)
                      |++.+++.+.. +     .++++|++++++||++.....+.......    ..-....|...+.+|.... .+..|    
T Consensus        90 a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d----  164 (432)
T 3a9z_A           90 SNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVE----  164 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCC----
T ss_pred             HHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcC----
Confidence            99999998741 1     25688999999999863222211110000    0000012443333332210 11123    


Q ss_pred             HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC----------CEEEEcccccCccccCCCccc
Q 011669          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG----------GLCIADEVQAGFARTGSHFWG  309 (480)
Q Consensus       240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g----------illI~DEv~tgfgr~G~~~~~  309 (480)
                      .++|++.++    +++++|+++++++++|.+.+    +++|.++|++||          +++|+||+|. +|...   ..
T Consensus       165 ~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~---~~  232 (432)
T 3a9z_A          165 VEDILAAVR----PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR---VD  232 (432)
T ss_dssp             HHHHHHTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC---CC
T ss_pred             HHHHHHhcc----CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc---cC
Confidence            567777664    36889999999999999887    899999999999          9999999995 54432   11


Q ss_pred             ccccCCCccee--eeccccccCccccccccCHHH-HHhhcCCC-------ccccCCCcHHHHHHHHHHHHHhhh--hHHH
Q 011669          310 FEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEI-AEVLTRRN-------YFNTFGGNPVCTAAGHAVLKVIQK--DKLQ  377 (480)
Q Consensus       310 ~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~-~~~l~~~~-------~~~t~~~~~~~~aaa~a~L~~i~~--~~~~  377 (480)
                      ..  ...+|++  +++|.+  |.++||+++++++ ...+....       ...+++.|+.+++++.++|+.+.+  +++.
T Consensus       233 ~~--~~~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~  308 (432)
T 3a9z_A          233 VE--DLGVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYE  308 (432)
T ss_dssp             HH--HHCCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hh--hcCCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHH
Confidence            21  2246766  458976  4679999999875 33333221       123456788888888888887655  4567


Q ss_pred             HHHHHHHHHHHHHHHHhHHhcCce--e---eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc------
Q 011669          378 NNAHVVGSYLKERLTALKDKYGII--G---DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG------  446 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~~~~~~--~---~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------  446 (480)
                      ++.+++.+++.+.|+++.. ....  .   ..+..+.+.++.+....    ..   ...+.+.+  .|+++..|      
T Consensus       309 ~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~l--~~i~~~~G~~~~~~  378 (432)
T 3a9z_A          309 AHMRDIRDYLEERLEAEFG-KRIHLNSRFPGVERLPNTCNFSIQGSQ----LR---GYMVLAQC--QTLLASVGASCHSD  378 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHG-GGEEESSCCTTCCBCTTEEEEEECSTT----CC---HHHHHHHC--SSEECBSSCGGGGG
T ss_pred             HHHHHHHHHHHHHHHhccC-CcEEEeCCCCcccCCCCEEEEEeCCCC----Cc---HHHHHHHh--cCeEEeccccccCC
Confidence            7778888888888877521 1111  1   01234556677774311    01   22333333  24444322      


Q ss_pred             ------------Cc----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          447 ------------GF----YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       447 ------------~~----~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                                  +.    ..+++||+++..+|++|+++++++|++++++
T Consensus       379 ~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~  427 (432)
T 3a9z_A          379 HEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ  427 (432)
T ss_dssp             GTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence                        10    1378999999888999999999999998764

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.93  E-value=2.6e-25  Score=230.40  Aligned_cols=344  Identities=14%  Similarity=0.106  Sum_probs=231.7

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc------ccc-ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH------STV-LYLNHAIADFAEALASKMPGNLKVVFFTNSGTE  169 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~------~~~-~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGse  169 (480)
                      ++..|+|..      ++|+.++.+.+++.+++.....      ... ....+...+++++++++++.+.++|+|++|+++
T Consensus        66 ~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~  139 (465)
T 3e9k_A           66 ENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTV  139 (465)
T ss_dssp             CBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHH
T ss_pred             CCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHH
Confidence            456788743      4577888898888887765321      110 011244467899999998877788999999999


Q ss_pred             HHHHHHHHHHhh-cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          170 ANELAIMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       170 A~~~Alk~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +++.+++.+... ..+++||+.+++||+..................  ..+...+.+.    .+..|    .++++++++
T Consensus       140 al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~--~~v~~~~~~~----~~~~d----~~~l~~~i~  209 (465)
T 3e9k_A          140 NLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE--SMRMIKPREG----EETLR----IEDILEVIE  209 (465)
T ss_dssp             HHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH--HEEEECCCTT----CSSCC----HHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCccee--eeEEEecCCC----CCccC----HHHHHHHHH
Confidence            999999876432 235679999999998655433221100000000  0011112111    11123    678888886


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eecccc
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGI  326 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~  326 (480)
                      ++ .+++++|+++++++++|.+.+    +++|.++|++||+++|+|++|+ +|..   ......++  .|++  +++|.+
T Consensus       210 ~~-~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~---~~~~~~~~--~D~~~~s~~K~l  278 (465)
T 3e9k_A          210 KE-GDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNV---ELYLHDWG--VDFACWCSYKYL  278 (465)
T ss_dssp             HH-GGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS---CCCHHHHT--CCEEEECSSSTT
T ss_pred             hc-CCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCc---CCchhhcC--CCEEEECccccc
Confidence            42 137899999999999999976    9999999999999999999997 3322   11222233  5665  566999


Q ss_pred             ccC-ccccccccCHHHHHhhcCCCcc---c----------------------cCCCcHHHHHHHHHHHHHhhh---hHHH
Q 011669          327 GNG-IPLGAVVTTPEIAEVLTRRNYF---N----------------------TFGGNPVCTAAGHAVLKVIQK---DKLQ  377 (480)
Q Consensus       327 g~G-~pig~v~~~~~~~~~l~~~~~~---~----------------------t~~~~~~~~aaa~a~L~~i~~---~~~~  377 (480)
                      ++| .++|++++++++.+.+.....+   +                      ..+.|++++++..++++.+.+   +++.
T Consensus       279 ~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~  358 (465)
T 3e9k_A          279 NAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALR  358 (465)
T ss_dssp             CCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHH
Confidence            644 5789999999987766543211   1                      014567888888888888765   4567


Q ss_pred             HHHHHHHHHHHHHHHHhHH---------hcCcee--eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc
Q 011669          378 NNAHVVGSYLKERLTALKD---------KYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG  446 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~---------~~~~~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  446 (480)
                      ++..++.+++.+.|+++..         .+..+.  +.+..|.++++.+..+          ...+.+.|.++||++...
T Consensus       359 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L~~~Gi~v~~~  428 (465)
T 3e9k_A          359 KKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQELEKRGVVCDKR  428 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHHHTTTEECEEE
T ss_pred             HHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHHHHCCEEEecC
Confidence            7788888888888877521         111111  2233588888877411          235788899999998754


Q ss_pred             CcCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Q 011669          447 GFYGNVFRITP-PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       447 ~~~~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +  .+++||+| ++.+|++||++++++|++++++
T Consensus       429 ~--~~~iRis~~~~~~t~edi~~~~~~l~~~l~~  460 (465)
T 3e9k_A          429 N--PNGIRVAPVPLYNSFHDVYKFTNLLTSILDS  460 (465)
T ss_dssp             T--TTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred             C--CCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence            3  57999999 8999999999999999998864

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.93  E-value=1.9e-24  Score=219.38  Aligned_cols=316  Identities=11%  Similarity=0.002  Sum_probs=209.0

Q ss_pred             CCCHHHHHHHHHHHHh-ccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 011669          115 HCHPYVVDSIVNQIKR-IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA  193 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~-~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~  193 (480)
                      +..+++.+++..+... ..+....+.++...+++++|+++++.+  .+++++||++|++.+++.+..  +++.|++.++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~~--~gd~vi~~~~~  112 (398)
T 2rfv_A           37 FVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLCQ--QGDHIVSASAI  112 (398)
T ss_dssp             CCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCC--TTCEEEEESSS
T ss_pred             cccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhC--CCCEEEEcCCC
Confidence            3446666665522221 223344567889999999999998653  678889999999999997643  67899999999


Q ss_pred             cccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       194 yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      ||+..........         ..|+....+|.       .|    .+++++.++    +++++|++++++|++|.+.+ 
T Consensus       113 ~~~~~~~~~~~~~---------~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~-  167 (398)
T 2rfv_A          113 YGCTHAFLSHSMP---------KFGINVRFVDA-------AK----PEEIRAAMR----PETKVVYIETPANPTLSLVD-  167 (398)
T ss_dssp             CHHHHHHHHTHHH---------HTTCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSBTTTTBCCC-
T ss_pred             cccHHHHHHHHHH---------HcCCEEEEeCC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCcccC-
Confidence            9886554321100         01333332221       12    577777774    37899999999999998875 


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeecccccc-Cccc-cccccCHHHHH-hhcCCCc
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNY  350 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pi-g~v~~~~~~~~-~l~~~~~  350 (480)
                         +++|.++|++||+++|+||+|..+ ..+ ...   .++....+.+++|.+++ |+|+ |++++++++++ .+.....
T Consensus       168 ---l~~i~~l~~~~~~~li~De~~~~~-~~~-~~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~  239 (398)
T 2rfv_A          168 ---IETVAGIAHQQGALLVVDNTFMSP-YCQ-QPL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLK  239 (398)
T ss_dssp             ---HHHHHHHHHHTTCEEEEECTTTCT-TTC-CGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHH
T ss_pred             ---HHHHHHHHHHcCCEEEEECCCccc-ccC-Cch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHH
Confidence               999999999999999999999743 222 221   23433444688999985 8998 99999998876 5554333


Q ss_pred             cc-cCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH----------HhcCceee----EeccceeEEEEE
Q 011669          351 FN-TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK----------DKYGIIGD----VRGRGFLLGVEF  415 (480)
Q Consensus       351 ~~-t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~----------~~~~~~~~----v~g~g~~~~i~~  415 (480)
                      .. +.+.+++.++++.++|+.+  +...++..+..+.+.+.|++..          ..++.+..    .++.|.++++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~  317 (398)
T 2rfv_A          240 DITGGCMSPFNAWLTLRGVKTL--GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEI  317 (398)
T ss_dssp             HTTCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE
T ss_pred             hCCCCCCCHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEE
Confidence            33 5678899999999888643  2233444455555555555421          01111111    135688888887


Q ss_pred             ecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-------------------------CCCEEEEeCCCCCCHHHHHHHH
Q 011669          416 VTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-------------------------YGNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t~~~id~~l  470 (480)
                      ...       ......+.+.+...|+.+.+|+.                         ..+.+||+++...++++|+.++
T Consensus       318 ~~~-------~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~  390 (398)
T 2rfv_A          318 AGG-------LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLE  390 (398)
T ss_dssp             TTH-------HHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHH
T ss_pred             cCC-------HHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHH
Confidence            321       12234455555555777665522                         1479999999999999999999


Q ss_pred             HHHHHH
Q 011669          471 DVMDYS  476 (480)
Q Consensus       471 ~~l~~~  476 (480)
                      ++|+++
T Consensus       391 ~al~~~  396 (398)
T 2rfv_A          391 HAIRKA  396 (398)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988764

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.93  E-value=1e-25  Score=229.39  Aligned_cols=333  Identities=15%  Similarity=0.130  Sum_probs=209.4

Q ss_pred             EEEeccCCcc-cccCCCCCHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhC-CCC-----CCEEE--EeCCHHH
Q 011669          100 RYLDAFGGIA-TVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKM-PGN-----LKVVF--FTNSGTE  169 (480)
Q Consensus       100 ~ylD~~~g~~-~~~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~-~~~-----~~~v~--f~~sGse  169 (480)
                      .+|||..|.+ ..   .++|.+.+++.++...   ....| ......+|++.+++++ ...     .++|.  .+++|++
T Consensus        42 ~~i~l~~g~~~d~---~~~~~v~~a~~~a~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g  115 (409)
T 4eu1_A           42 RKVNLSIGVYRDD---ADQPFVLECVKQATLG---TNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG  115 (409)
T ss_dssp             SCEECCCSSCCCT---TSCCCCCHHHHTCCCC---SCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred             CceeeeeeEEECC---CCCEeecHHHHhcCcc---ccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence            5788888775 32   5677888888876222   11223 2344567778887765 222     35564  4999999


Q ss_pred             HHHHHHHHHHhhcC-CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          170 ANELAIMMARLYTG-CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       170 A~~~Alk~ar~~~~-~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      |++.+..+++...+ ++.|++.+++|++........             |...+.+|......|..|    .+++++.++
T Consensus       116 a~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~  178 (409)
T 4eu1_A          116 ALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKA-------------GMELTPYSYYDPATKGLN----LAGMLECLD  178 (409)
T ss_dssp             HHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCEETTTTEEC----HHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-------------CCeEEEEEeecCcCCcCc----HHHHHHHHH
Confidence            99998887766544 589999999998775544332             222233222111112223    678888886


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--Cccccc-ccCCCccee---ee
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFE-AHGVVPDIV---TM  322 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~~~~~~-~~~~~pDiv---t~  322 (480)
                      .. ++..+++++...+|++|.+. +.+.+++|.++|++||+++|+||+|.+|++.+.  ..+... ..+..++++   +|
T Consensus       179 ~~-~~~~~~i~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  256 (409)
T 4eu1_A          179 KA-PEGSVILVHACAHNPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSF  256 (409)
T ss_dssp             HS-CTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEEC
T ss_pred             hC-CCCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecC
Confidence            43 23456666555577778664 778899999999999999999999999876541  012222 123445543   89


Q ss_pred             ccccc-cCcccccc---ccCHH----HHHhhcCCCccccCCCcHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHH
Q 011669          323 AKGIG-NGIPLGAV---VTTPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSY  386 (480)
Q Consensus       323 sK~~g-~G~pig~v---~~~~~----~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~--------~~~~~~~~~~~~~~  386 (480)
                      ||.+| .|+|+||+   +.+++    +++.+.......+++.+++++.++.++|+...        -++..++++++.++
T Consensus       257 SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (409)
T 4eu1_A          257 SKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKR  336 (409)
T ss_dssp             TTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 79999995   66777    55555433334566778899988888886321        12344455555556


Q ss_pred             HHHHHHHhHHhcCc-eeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHH
Q 011669          387 LKERLTALKDKYGI-IGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE  464 (480)
Q Consensus       387 l~~~L~~l~~~~~~-~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~  464 (480)
                      +++.|+++  ..+. +... ...|++.|+.+        +    ...+...+.++||++.+++      ||+.+ ..+++
T Consensus       337 l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~ll~~~gv~v~p~~------Ri~~~-~~~~~  395 (409)
T 4eu1_A          337 LVSELKAC--GSVHDWSHIERQVGMMAYTGL--------T----REQVELLRSEYHIYMTLNG------RAAVS-GLNST  395 (409)
T ss_dssp             HHHHHHHT--TCCSCCHHHHHSCSSEEECCC--------C----HHHHHHHHHHHCEECCTTC------EEEGG-GCCTT
T ss_pred             HHHHHHhc--CCCCCcceecCCceEEEEeCC--------C----HHHHHHHHHcCCEEEcCCC------EEEEE-ecCHh
Confidence            65555543  1111 2222 23355555332        1    1223334446799998753      77764 46778


Q ss_pred             HHHHHHHHHHHHHh
Q 011669          465 DADYLVDVMDYSLS  478 (480)
Q Consensus       465 ~id~~l~~l~~~l~  478 (480)
                      +|++++++|+++++
T Consensus       396 ~i~~~~~~l~~~l~  409 (409)
T 4eu1_A          396 NVEYVSQAIHNVTK  409 (409)
T ss_dssp             THHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHhC
Confidence            89999999998863

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.93  E-value=9.9e-25  Score=221.51  Aligned_cols=333  Identities=17%  Similarity=0.102  Sum_probs=217.2

Q ss_pred             eeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCC
Q 011669           87 DGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNS  166 (480)
Q Consensus        87 ~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~s  166 (480)
                      +|+.+..-+..-+.||||..|.+..  +   |+|.+++.+++....+    +..+...+++++|+++++.  +.+++++|
T Consensus        18 ~~~~~~~~~~~~~~~id~~~~~~~~--~---~~v~~a~~~~~~~~~y----~~~~~~~~l~~~la~~~~~--~~~v~~~~   86 (399)
T 2oga_A           18 QGHMSSRAETPRVPFLDLKAAYEEL--R---AETDAAIARVLDSGRY----LLGPELEGFEAEFAAYCET--DHAVGVNS   86 (399)
T ss_dssp             ---------CCCBCSCCHHHHHHHT--H---HHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHTTS--SEEEEESC
T ss_pred             ccCcccccccccCcccccCcCCCCC--C---HHHHHHHHHHHhcCCC----CCchhHHHHHHHHHHHHCC--CeEEEecC
Confidence            4455544322237899999887654  2   9999999998876322    2357788999999999964  46889999


Q ss_pred             HHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       167 GseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      |++|++.+++.++ ..+++.|++.+++||+...... ..            |...+.+|... ..+..|    .+++++.
T Consensus        87 Gt~a~~~~l~~~~-~~~gd~vl~~~~~~~~~~~~~~-~~------------g~~~~~~~~~~-~~~~~d----~~~l~~~  147 (399)
T 2oga_A           87 GMDALQLALRGLG-IGPGDEVIVPSHTYIASWLAVS-AT------------GATPVPVEPHE-DHPTLD----PLLVEKA  147 (399)
T ss_dssp             HHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHHHHH-HT------------TCEEEEECBCS-SSSSBC----HHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCcCEEEECCCccHHHHHHHH-HC------------CCEEEEEecCC-CCCCcC----HHHHHHh
Confidence            9999999998763 2356889999999998554332 22            22222222110 012233    5778777


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcc-ccCCCcccccccCCCcceeee---
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA-RTGSHFWGFEAHGVVPDIVTM---  322 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg-r~G~~~~~~~~~~~~pDivt~---  322 (480)
                      ++    +++++|+++   +++|.+.+    +++|.++|++||+++|+||+|+.+. ..+      ...+..+|++++   
T Consensus       148 i~----~~~~~v~~~---n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~------~~~~~~~di~~~S~~  210 (399)
T 2oga_A          148 IT----PRTRALLPV---HLYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRG------RRIGAGSSVAAFSFY  210 (399)
T ss_dssp             CC----TTEEEECCB---CGGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETT------EETTCTTCEEEEECC
T ss_pred             cC----CCCeEEEEe---CCcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCC------eecccccCEEEEeCC
Confidence            75    267777753   45676654    9999999999999999999997331 222      122334688876   


Q ss_pred             -cccccc-CccccccccC-HHHHHhhcCCCc------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 011669          323 -AKGIGN-GIPLGAVVTT-PEIAEVLTRRNY------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL  387 (480)
Q Consensus       323 -sK~~g~-G~pig~v~~~-~~~~~~l~~~~~------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l  387 (480)
                       +|.+++ | ++|+++.+ +++++.+.....            +.++..++++++++.++|+.++  .+.++.+++.+++
T Consensus       211 ~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l  287 (399)
T 2oga_A          211 PGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEY  287 (399)
T ss_dssp             TTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHH
T ss_pred             CCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence             499997 8 99999986 788766543111            2234568999998888887553  3556666666666


Q ss_pred             HHHHHHhHHhcCceeeEeccceeEE--EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----------------
Q 011669          388 KERLTALKDKYGIIGDVRGRGFLLG--VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----------------  449 (480)
Q Consensus       388 ~~~L~~l~~~~~~~~~v~g~g~~~~--i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----------------  449 (480)
                      ++.|+++. .+... .....+..++  +.+...         ....+.+.|.++||.+.++...                
T Consensus       288 ~~~L~~~~-g~~~~-~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~  356 (399)
T 2oga_A          288 LSGLAGLP-GIGLP-VTAPDTDPVWHLFTVRTE---------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEG  356 (399)
T ss_dssp             HHHTTTCT-TCBCC-CCCTTEECCCSSEEEECS---------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTT
T ss_pred             HHHhccCC-Ccccc-CCCCCCcceeEEEEEECC---------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCC
Confidence            66665431 11111 1111222222  333211         1456888899999999864210                


Q ss_pred             ---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          450 ---------GNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       450 ---------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                               .+.+||+++..+|++|+++++++|+++++++
T Consensus       357 ~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          357 SLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             SCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                     2579999999999999999999999988753

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.93  E-value=4e-24  Score=216.01  Aligned_cols=296  Identities=13%  Similarity=0.051  Sum_probs=200.9

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      |....++++...+++++|+++++.+ + .++++||+||++.+++.+.  .++++|++.++.||+..........      
T Consensus        44 ~~~~~~~~~~~~~l~~~la~~~~~~-~-~i~~~sGt~a~~~~~~~~~--~~g~~vl~~~~~~~~~~~~~~~~~~------  113 (386)
T 1cs1_A           44 HDYSRRGNPTRDVVQRALAELEGGA-G-AVLTNTGMSAIHLVTTVFL--KPGDLLVAPHDCYGGSYRLFDSLAK------  113 (386)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTCS-E-EEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHHHT------
T ss_pred             cceeCCCCccHHHHHHHHHHHhCCC-c-EEEeCCHHHHHHHHHHHHh--CCCCEEEEecCCcHhHHHHHHHHHH------
Confidence            3445677888899999999999764 4 4556888999999999763  3678899999999874332111100      


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                         ..|+....++.       +|    .+++++.++.    ++++|++++++|++|.+.+    +++|.++|++||+++|
T Consensus       114 ---~~g~~~~~~~~-------~d----~~~l~~~i~~----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li  171 (386)
T 1cs1_A          114 ---RGCYRVLFVDQ-------GD----EQALRAALAE----KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSV  171 (386)
T ss_dssp             ---TTSCEEEEECT-------TC----HHHHHHHHHT----CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred             ---hcCCEEEEeCC-------CC----HHHHHHhhcc----CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence               01333222221       12    5788888862    6789999999999998875    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeecccccc-Cccc-cccccCH-HHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL-GAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pi-g~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      +||+|+++....  .  . .++....+.+++|.+++ |.++ |++++++ ++++.+.......+.+.++++++++.++++
T Consensus       172 ~De~~~~~~~~~--~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~  246 (386)
T 1cs1_A          172 VDNTFLSPALQN--P--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR  246 (386)
T ss_dssp             EECTTTCTTTCC--G--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred             EECCCcccccCC--c--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence            999999775431  1  1 23433334478999985 5676 9999986 788877654444456678998888777776


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHH---h-cCcee----------eEeccceeEEEEEecCCCcCCCCHHHHHHHHHH
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKD---K-YGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK  435 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~---~-~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  435 (480)
                      .+  +...++..+..+++.+.|+++..   . ++.+.          ..++.|.++.+++...          ...+.+.
T Consensus       247 ~~--~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  314 (386)
T 1cs1_A          247 TL--VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRRF  314 (386)
T ss_dssp             TH--HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHHH
Confidence            43  22334444455555555544310   0 11111          1245688888887321          2456777


Q ss_pred             HHHcCceeecc--C--------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          436 MKEMGVLVGKG--G--------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       436 l~~~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      |.++||++...  +                          ...+++||++++..++++++.+.++|+++.
T Consensus       315 l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~  384 (386)
T 1cs1_A          315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN  384 (386)
T ss_dssp             HHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred             HHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence            88899998641  1                          124799999999888999998888888754

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.93  E-value=1e-24  Score=227.98  Aligned_cols=338  Identities=15%  Similarity=0.145  Sum_probs=210.9

Q ss_pred             CCHHHHHHHHHHHHhccc-cccccC-ChHHHHHHHHHHHhC------CCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceE
Q 011669          116 CHPYVVDSIVNQIKRIQH-STVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSGTEANELAIMMARLYTGCNDI  187 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~-~~~~~~-~~~~~~l~e~L~~~~------~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~i  187 (480)
                      .++++++++.+++..... ....|. .....++++.+++++      +.+.++|++|+||++|+..+++.... .+++.|
T Consensus       107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~V  185 (500)
T 3tcm_A          107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR-NEKDGI  185 (500)
T ss_dssp             SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC-STTEEE
T ss_pred             CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC-CCCCEE
Confidence            567788888887776421 122232 233444555555443      24567899999999999999987641 257899


Q ss_pred             EEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCC
Q 011669          188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQG  265 (480)
Q Consensus       188 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~  265 (480)
                      ++.+++|+++.......             |...+.++......|..|    .++|++.++..  ...++++|++...+|
T Consensus       186 lv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~k~ivl~~p~N  248 (500)
T 3tcm_A          186 LVPIPQYPLYSASIALH-------------GGALVPYYLNESTGWGLE----TSDVKKQLEDARSRGINVRALVVINPGN  248 (500)
T ss_dssp             EEEESCCTHHHHHHHHT-------------TCEEEEEECBTTTTSBCC----HHHHHHHHHHHHHTTCEEEEEEEESSCT
T ss_pred             EEeCCCcHhHHHHHHHc-------------CCEEEEEecccccCCCCC----HHHHHHHHHHHHhcCCCceEEEEECCCC
Confidence            99999998776654433             222233322222234445    56777777531  112566666666677


Q ss_pred             CCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Cccccc----ccCC---Ccc-ee--eecccc-c-cCccc
Q 011669          266 VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFE----AHGV---VPD-IV--TMAKGI-G-NGIPL  332 (480)
Q Consensus       266 ~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~~----~~~~---~pD-iv--t~sK~~-g-~G~pi  332 (480)
                      ++|.+. +.+.+++|.++|++||+++|+||+|.++.+.+. .+..+.    ..+.   ..+ ++  ||||++ | .|+|+
T Consensus       249 PtG~~~-s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~  327 (500)
T 3tcm_A          249 PTGQVL-AEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG  327 (500)
T ss_dssp             TTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC
T ss_pred             CCcccC-CHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccce
Confidence            888764 777899999999999999999999998765431 222211    1111   112 33  889999 5 69999


Q ss_pred             ccccc---CHHHHHhhcCCCccccCCCcHHHHHHHHHHHH-----------Hhhh-hHHHHHHHHHHHHHHHHHHHhHHh
Q 011669          333 GAVVT---TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK-----------VIQK-DKLQNNAHVVGSYLKERLTALKDK  397 (480)
Q Consensus       333 g~v~~---~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~-----------~i~~-~~~~~~~~~~~~~l~~~L~~l~~~  397 (480)
                      ||+++   ++++++.+.... ..+++.++++++++.++|+           ..++ +.+.++++++.+++.+.|+++   
T Consensus       328 G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---  403 (500)
T 3tcm_A          328 GYFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL---  403 (500)
T ss_dssp             EEEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred             EEEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence            99998   888888776432 2456778888888887775           1111 234455555555665555543   


Q ss_pred             cCceeeEecc-ceeEEEEEecCCCc-----CCCCHHHHHHHHHHHHHcCceeeccCcCC-----CEEEEeCCCCCCHHHH
Q 011669          398 YGIIGDVRGR-GFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKEMGVLVGKGGFYG-----NVFRITPPLCFTKEDA  466 (480)
Q Consensus       398 ~~~~~~v~g~-g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-----~~iRi~p~~~~t~~~i  466 (480)
                       +.+...... |++.|+.+......     ..........+.+.|.++||++.+|..++     +++||++.  .+++++
T Consensus       404 -~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i  480 (500)
T 3tcm_A          404 -EGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKI  480 (500)
T ss_dssp             -TTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTH
T ss_pred             -CCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHH
Confidence             334444444 44555444211000     00000011223456677899999875443     47999965  899999


Q ss_pred             HHHHHHHHHHHhh
Q 011669          467 DYLVDVMDYSLSK  479 (480)
Q Consensus       467 d~~l~~l~~~l~~  479 (480)
                      ++++++|.+++++
T Consensus       481 ~~~i~~l~~~~~~  493 (500)
T 3tcm_A          481 PAVISRFTVFHEA  493 (500)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.92  E-value=1.5e-23  Score=212.35  Aligned_cols=289  Identities=16%  Similarity=0.053  Sum_probs=200.1

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      |....+.++...+++++|+++++.  +.+++++||++|++.+++.+.  .++++||+.++.||+..........      
T Consensus        58 ~~y~r~~~~~~~~l~~~la~~~g~--~~~~~~~sGt~A~~~al~~~~--~~gd~Vi~~~~~y~~~~~~~~~~~~------  127 (392)
T 3qhx_A           58 YEYARTGNPTRTALEAALAAVEDA--AFGRAFSSGMAAADCALRAML--RPGDHVVIPDDAYGGTFRLIDKVFT------  127 (392)
T ss_dssp             BCBTTTCCHHHHHHHHHHHHHTTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHTGG------
T ss_pred             ccccCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEeCCCcchHHHHHHHHHH------
Confidence            455667889999999999999965  478999999999999999763  3678999999999875433211110      


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                         ..|+....++.       +|    .++++++++    +++++|++|+++|++|.+.+    +++|+++|++||+++|
T Consensus       128 ---~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li  185 (392)
T 3qhx_A          128 ---GWNVEYTPVAL-------AD----LDAVRAAIR----PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVL  185 (392)
T ss_dssp             ---GGTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEE
T ss_pred             ---hcCcEEEEeCC-------CC----HHHHHHhhC----CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEE
Confidence               11333332221       12    577888775    37899999999999998876    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceee--ecccccc-C-ccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~-G-~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~  367 (480)
                      +||+|+.+ ..      ....+..+|+++  ++|.+++ | +++|+++++ +++++.+....+..++..+|+.+++++..
T Consensus       186 ~D~~~~~~-~~------~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~  258 (392)
T 3qhx_A          186 VDNTFASP-AL------QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRG  258 (392)
T ss_dssp             EECTTTCT-TT------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred             EECCCccc-cc------CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence            99999732 11      122234567775  8899995 5 789999998 68887776554556677889988888877


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE------------------eccceeEEEEEecCCCcCCCCHHHH
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAET  429 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~  429 (480)
                      ++.+.  ...++..++.+++.+.|++    ++.+..+                  +|.|.++++++..+       ....
T Consensus       259 l~~l~--~~~~~~~~~~~~l~~~L~~----~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-------~~~~  325 (392)
T 3qhx_A          259 LKTLV--LRMQRHSENAAAVAEFLAE----HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-------RTAA  325 (392)
T ss_dssp             HTTHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-------HHHH
T ss_pred             hhHHH--HHHHHHHHHHHHHHHHHhc----CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-------HHHH
Confidence            76432  2234445555555555544    3433332                  66788999998431       2345


Q ss_pred             HHHHHHHHHcCceeeccCc----------------------CCCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          430 LYIMDKMKEMGVLVGKGGF----------------------YGNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       430 ~~~~~~l~~~Gv~v~~~~~----------------------~~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                      ..+.+.|...|+.+..|+.                      ..+.|||+.....++++|+.+.++|
T Consensus       326 ~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          326 EQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             HHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence            6677777666766654431                      2467999977666555555555443

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.92  E-value=1.1e-23  Score=213.68  Aligned_cols=333  Identities=11%  Similarity=0.068  Sum_probs=212.2

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHH-hccc--cccc-cC-ChHHHHH----HHHHHHhCCCCCCEEEEeCCHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQH--STVL-YL-NHAIADF----AEALASKMPGNLKVVFFTNSGTE  169 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~-~~~~--~~~~-~~-~~~~~~l----~e~L~~~~~~~~~~v~f~~sGse  169 (480)
                      +.++|+.++.+      .+|+|.+|+.+++. ...+  .... +. .+...++    +++++++++.+ ...++++||++
T Consensus        24 ~~~~~~~~~~~------~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~-~~~i~~~sGt~   96 (405)
T 2vi8_A           24 AKIELIASENF------VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE-HANVQPHSGAQ   96 (405)
T ss_dssp             HSEECCTTCCC------CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHH
T ss_pred             cceeeccCccc------CCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC-ceEEEecCcHH
Confidence            34677755422      28999999999885 3221  1111 21 2333444    46899988654 34456788899


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccc--cccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGT--MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~--~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      |++.+++.+.  .+++.|++.+++|++.....  ....+.          ++..+.++.. ...+..|    .+++++.+
T Consensus        97 a~~~a~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~-~~~~~~d----~~~l~~~i  159 (405)
T 2vi8_A           97 ANMAVYFTVL--EHGDTVLGMNLSHGGHLTHGSPVNFSGV----------QYNFVAYGVD-PETHVID----YDDVREKA  159 (405)
T ss_dssp             HHHHHHHHHC--CTTCEEEEECGGGTCCTTTTCTTSHHHH----------HSEEEEECBC-TTTCSBC----HHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCEEEEecccccchhcccchhhhccc----------eeEEEecccc-cccCCcC----HHHHHHHH
Confidence            9999999874  36788999888765543211  111111          0112222110 0112234    67788888


Q ss_pred             HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Cccee--eecc
Q 011669          248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIV--TMAK  324 (480)
Q Consensus       248 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDiv--t~sK  324 (480)
                      +..   ++++|++.|.+.  |.    ...+++|.++|++||+++|+||+|+ +|+.+....   ...+ .+|++  +++|
T Consensus       160 ~~~---~~~~v~~~~~~~--~~----~~~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~---~~~~~~~di~~~s~sK  226 (405)
T 2vi8_A          160 RLH---RPKLIVAAAAAY--PR----IIDFAKFREIADEVGAYLMVDMAHI-AGLVAAGLH---PNPVPYAHFVTTTTHK  226 (405)
T ss_dssp             HHH---CCSEEEECCSSC--CS----CCCHHHHHHHHHHHTCEEEEECTTT-HHHHHTTSS---CCSTTTCSEEEEESSS
T ss_pred             Hhc---CCeEEEEeCCCC--Cc----cCCHHHHHHHHHHcCCEEEEEcccc-ccccccCcC---CCccccCCEEEEeccc
Confidence            631   457788755332  32    2239999999999999999999998 554431111   1111 46776  7899


Q ss_pred             ccccCccccccccCHHHHHhhcCCCccccCCC-cHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          325 GIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGG-NPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       325 ~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~-~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      +++++.. |++++++++++.+.......++++ ++..++++.++|+.+.+   +++.++.+++.+++.+.|+++  .+..
T Consensus       227 ~~~g~~g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~  303 (405)
T 2vi8_A          227 TLRGPRG-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTL  303 (405)
T ss_dssp             TTCCCSC-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred             cCCCCCC-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCeE
Confidence            9985544 999999998887755332334444 56777777788887654   456777888888888888775  2221


Q ss_pred             eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------c-CCCEEEEeCCC----CCCHHHHHH
Q 011669          401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------F-YGNVFRITPPL----CFTKEDADY  468 (480)
Q Consensus       401 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~-~~~~iRi~p~~----~~t~~~id~  468 (480)
                      +. ..+.+.++++.+....       .....+.+.|.++||.+.++.       . ..+.+||+++.    .++++++++
T Consensus       304 ~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~  375 (405)
T 2vi8_A          304 VS-GGTDNHLLLVDLRPQQ-------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDE  375 (405)
T ss_dssp             GG-GSCSSSEEEEECGGGT-------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred             ec-CCCCceEEEEEccCCC-------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHH
Confidence            11 1245778888874211       014567788889999998753       1 13679999886    578999999


Q ss_pred             HHHHHHHHHhh
Q 011669          469 LVDVMDYSLSK  479 (480)
Q Consensus       469 ~l~~l~~~l~~  479 (480)
                      ++++|++++++
T Consensus       376 ~~~~l~~~~~~  386 (405)
T 2vi8_A          376 IAAIIGLVLKN  386 (405)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhc
Confidence            99999998864

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.92  E-value=2e-24  Score=219.10  Aligned_cols=337  Identities=15%  Similarity=0.052  Sum_probs=201.3

Q ss_pred             EEeccCCcccccCCCC--CHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhCCCC------CCEEEE--eCCHHH
Q 011669          101 YLDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGN------LKVVFF--TNSGTE  169 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~~~~------~~~v~f--~~sGse  169 (480)
                      .|||..|.+....++.  .|.|.+++.+.+...  ....|.+ ....++++.+++++...      .++|++  |+||++
T Consensus        30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~  107 (401)
T 7aat_A           30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKK--MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTG  107 (401)
T ss_dssp             CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTT--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             ceeeeeeeEECCCCCEechHHHHHHHHHhcccc--cccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchH
Confidence            5777777652222332  246788777665431  1222332 34456666666655321      567877  999999


Q ss_pred             HHHHHHHHHHhh-cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          170 ANELAIMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       170 A~~~Alk~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      |+..+++.++.+ .+++.|++.+++|+++.......             |...+.+|......++-|    .+++++.++
T Consensus       108 al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~  170 (401)
T 7aat_A          108 SLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-------------GLQLQAYRYYDPKTCSLD----FTGAMEDIS  170 (401)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECEETTTTEEC----HHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHc-------------CCeeEeeeeeccccCccC----HHHHHHHHH
Confidence            999999876543 35789999999998765443322             222222221111112223    456666665


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC--Ccccccc-cCCCcc---eeee
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFEA-HGVVPD---IVTM  322 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~--~~~~~~~-~~~~pD---ivt~  322 (480)
                      +. ..+++++++...+|++|.+ .+.+.+++|.++|++||+++|+||+|.+|+..+.  ..+.... .+..++   +.+|
T Consensus       171 ~~-~~~~~~v~i~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  248 (401)
T 7aat_A          171 KI-PEKSIILLHACAHNPTGVD-PRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSY  248 (401)
T ss_dssp             TS-CTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEEC
T ss_pred             hC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecC
Confidence            42 3467888888888888876 4788899999999999999999999999876541  1222211 122233   3589


Q ss_pred             ccccc-cCcccccccc---CHHH----HHhhcCCCccccCCCcHHHHHHHHHHHHHh------h--hhHHHHHHHHHHHH
Q 011669          323 AKGIG-NGIPLGAVVT---TPEI----AEVLTRRNYFNTFGGNPVCTAAGHAVLKVI------Q--KDKLQNNAHVVGSY  386 (480)
Q Consensus       323 sK~~g-~G~pig~v~~---~~~~----~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i------~--~~~~~~~~~~~~~~  386 (480)
                      ||.+| .|+|+||+++   +++.    ...+.......+.+.+..+++++.+.++.-      .  -++..++++++.++
T Consensus       249 sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~  328 (401)
T 7aat_A          249 AKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQ  328 (401)
T ss_dssp             TTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 7999999775   6663    333332222334455556666555555310      0  12234455555555


Q ss_pred             HHHHHHHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHH
Q 011669          387 LKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKED  465 (480)
Q Consensus       387 l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~  465 (480)
                      +.+.|+++... +.+... ...|++.|+.+        +    ...+...+.++||.+.++      +||+.+. .++++
T Consensus       329 l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~--------~----~~~~~~ll~~~gi~v~~~------~Ris~~~-~~~~~  388 (401)
T 7aat_A          329 LVSNLKKEGSS-HNWQHITDQIGMFCFTGL--------K----PEQVERLTKEFSIYMTKD------GRISVAG-VASSN  388 (401)
T ss_dssp             HHHHHHHTTCC-SCCHHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGGG-CCTTT
T ss_pred             HHHHHHhcCCC-CCCceecCCcceEEecCC--------C----HHHHHHHHHhCCEeccCC------CeEEecc-CChhh
Confidence            55555543100 112222 23355555433        1    233444456789999754      5888764 45666


Q ss_pred             HHHHHHHHHHHHh
Q 011669          466 ADYLVDVMDYSLS  478 (480)
Q Consensus       466 id~~l~~l~~~l~  478 (480)
                      |++++++|+++++
T Consensus       389 i~~~~~~l~~~~~  401 (401)
T 7aat_A          389 VGYLAHAIHQVTK  401 (401)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998863

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.92  E-value=4.2e-23  Score=210.48  Aligned_cols=305  Identities=11%  Similarity=0.072  Sum_probs=205.7

Q ss_pred             cCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEc
Q 011669          112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (480)
Q Consensus       112 ~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~  191 (480)
                      .++|.+|+.++++.+  ....|....+.++...+++++++++++.  ++++|++||++|++.+++.+.  .++++|++.+
T Consensus        29 ~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~al~~l~--~~gd~vi~~~  102 (412)
T 2cb1_A           29 AYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGA--LEAVVLASGQAATFAALLALL--RPGDEVVAAK  102 (412)
T ss_dssp             BCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC--CTTCEEEEET
T ss_pred             eeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEeC
Confidence            456888776665544  3333444445678899999999999864  479999999999999998663  3678899999


Q ss_pred             CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCccee
Q 011669          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (480)
Q Consensus       192 ~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~  271 (480)
                      +.|++..........         ..|+....++.        |    .+++++.++    +++++|+++++++++|.+.
T Consensus       103 ~~~~~~~~~~~~~~~---------~~g~~~~~~~~--------~----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~  157 (412)
T 2cb1_A          103 GLFGQTIGLFGQVLS---------LMGVTVRYVDP--------E----PEAVREALS----AKTRAVFVETVANPALLVP  157 (412)
T ss_dssp             TCCHHHHHHHHHTTT---------TTTCEEEEECS--------S----HHHHHHHCC----TTEEEEEEESSCTTTCCCC
T ss_pred             CCchhHHHHHHHHHH---------HcCCEEEEECC--------C----HHHHHHHhc----cCCeEEEEeCCCCCCcccc
Confidence            999864432211100         11333333221        2    567887774    3789999999999999887


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--ecccccc-CccccccccCH---------
Q 011669          272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPLGAVVTTP---------  339 (480)
Q Consensus       272 ~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~-G~pig~v~~~~---------  339 (480)
                      +    +++|.++|++||+++|+||+|++++... .     ..+..+|+++  ++|.+++ |.|+|+++..+         
T Consensus       158 ~----l~~i~~l~~~~~~~li~D~~~~~~~~~~-~-----~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~  227 (412)
T 2cb1_A          158 D----LEALATLAEEAGVALVVDNTFGAAGALC-R-----PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYP  227 (412)
T ss_dssp             C----HHHHHHHHHHHTCEEEEECGGGTTTTSC-C-----GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSG
T ss_pred             c----HHHHHHHHHHcCCEEEEECCCccccccC-C-----ccccCCeEEEECCcccccCCCCcEEEEEEecccccccccc
Confidence            5    9999999999999999999998663222 1     1123467765  8899985 78999887644         


Q ss_pred             -------------------HHHHhhcCCC-ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          340 -------------------EIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       340 -------------------~~~~~l~~~~-~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                                         ++.+.++... ....+..+|..++.++..++.+  +...++..++.+++.+.|.+.    +
T Consensus       228 ~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~  301 (412)
T 2cb1_A          228 QFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQGH----P  301 (412)
T ss_dssp             GGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHTC----T
T ss_pred             ccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHcC----C
Confidence                               3333332211 1112345777777777666544  233445556677777766553    3


Q ss_pred             ceeeE------------------eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC--------------
Q 011669          400 IIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG--------------  447 (480)
Q Consensus       400 ~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------  447 (480)
                      .+..+                  ++.|.++.+.+ .+          ...+.+.|.+.||.+ .+.              
T Consensus       302 ~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~----------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~  369 (412)
T 2cb1_A          302 KVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GD----------LERASRFLGAIRLLK-AANLGDARTLLVHPWTT  369 (412)
T ss_dssp             TCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS----------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTT
T ss_pred             CeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CC----------HHHHHHHHHhCCeee-ecccCCCcceeecCccc
Confidence            33322                  35677888887 31          245666777889887 441              


Q ss_pred             --------------cCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          448 --------------FYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       448 --------------~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                                    ...+.+|+++....++++|+.++++|++
T Consensus       370 ~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          370 THSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA  411 (412)
T ss_dssp             TTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred             ccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence                          0147899999999999999999988864

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.92  E-value=6e-24  Score=211.12  Aligned_cols=332  Identities=14%  Similarity=0.138  Sum_probs=211.9

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      .++|||.++...    ..+|++.+++.+....   ....++.+...+|+++|+++++.  +.+++++||++|+..+++.+
T Consensus         3 ~~~i~~~~~~~~----~p~~~~~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~~~~~~   73 (347)
T 1jg8_A            3 HMMIDLRSDTVT----KPTEEMRKAMAQAEVG---DDVYGEDPTINELERLAAETFGK--EAALFVPSGTMGNQVSIMAH   73 (347)
T ss_dssp             --CEECSCGGGC----CCCHHHHHHHHTCCCC---CGGGTCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHH
T ss_pred             ceEEEeccccCC----CCCHHHHHHHhcCCCC---CcccCCChHHHHHHHHHHHHhCC--ceEEEecCcHHHHHHHHHHh
Confidence            356888877654    2668899988654211   11233567888999999999854  57889999999999998765


Q ss_pred             HhhcCCceEEEEcCCccccccc--ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCc
Q 011669          179 RLYTGCNDIISLRNAYHGNAAG--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGH  254 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~--~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~  254 (480)
                      ..  ++++|++.+++|......  .....            |...+.+ ...  .+..|    .++++++++...  ..+
T Consensus        74 ~~--~gd~Vl~~~~~~~~~~~~~~~~~~~------------g~~~~~v-~~~--~~~~d----~~~l~~~i~~~~~~~~~  132 (347)
T 1jg8_A           74 TQ--RGDEVILEADSHIFWYEVGAMAVLS------------GVMPHPV-PGK--NGAMD----PDDVRKAIRPRNIHFPR  132 (347)
T ss_dssp             CC--TTCEEEEETTCHHHHSSTTHHHHHT------------CCEEEEE-CEE--TTEEC----HHHHHHHSCCSCTTSCC
T ss_pred             cC--CCCEEEEcCcchhhhccccchhhcc------------CeEEEEe-cCC--CCccC----HHHHHHHhccccccccC
Confidence            43  568899988887542211  11111            2222222 110  11112    677888775310  126


Q ss_pred             eEEEEEcccCCCC-cceeCCCChHHHHHHHHHHhCCEEEEcccccCcc---ccCCCcccccccCCCcceeeeccccccCc
Q 011669          255 VAGFLSESIQGVG-GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA---RTGSHFWGFEAHGVVPDIVTMAKGIGNGI  330 (480)
Q Consensus       255 ~a~vi~epi~~~~-G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg---r~G~~~~~~~~~~~~pDivt~sK~~g~G~  330 (480)
                      +++|++++++|++ |.+ .+.+.+++|.++|++||+++|+||+|. ++   ..+....... .+...-++++||++++  
T Consensus       133 ~~~v~~~~~~npt~G~~-~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~~~~~~-~~~d~~~~s~sK~l~~--  207 (347)
T 1jg8_A          133 TSLIAIENTHNRSGGRV-VPLENIKEICTIAKEHGINVHIDGARI-FNASIASGVPVKEYA-GYADSVMFCLSKGLCA--  207 (347)
T ss_dssp             EEEEEEESSBTTTTSBC-CCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCCHHHHH-HTCSEEEEESSSTTCC--
T ss_pred             ceEEEEeccccccCCcc-CcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCChHHhc-ccccEEEEecccccCC--
Confidence            8899999888887 765 477789999999999999999999875 31   1221111010 1111114478999975  


Q ss_pred             ccc-ccccCHHHHHhhcCC--CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc
Q 011669          331 PLG-AVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR  407 (480)
Q Consensus       331 pig-~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  407 (480)
                      |+| ++++++++++.+...  ..++++..+++.++++.++|+...+ . .++..+..+++++.|+++  .+... .....
T Consensus       208 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~l~~~L~~~--~~~~~-~~~~~  282 (347)
T 1jg8_A          208 PVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVD-R-LKEDHENARFLALKLKEI--GYSVN-PEDVK  282 (347)
T ss_dssp             SSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSST-T-HHHHHHHHHHHHHHHHHH--TCBCC-GGGCC
T ss_pred             CceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHhc--Cceec-cCCCc
Confidence            467 466788887765432  1233444566777777777764322 2 233345567777777665  22211 12345


Q ss_pred             ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |.++++.+....       .....+.+.|+++||.+.+++  .+++||+++..++++|+++++++|++++++
T Consensus       283 ~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~--~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~  345 (347)
T 1jg8_A          283 TNMVILRTDNLK-------VNAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFRK  345 (347)
T ss_dssp             SSEEEEECTTSS-------SCHHHHHHHHHHHTEECEEEE--TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEccccc-------CCHHHHHHHHHHCCCEEecCC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            677787763111       114568888889999998765  568999998889999999999999998764

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.92  E-value=2.4e-24  Score=227.01  Aligned_cols=351  Identities=10%  Similarity=0.046  Sum_probs=209.1

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHH-HhCCC-----CCCEEEEeCCHHHHHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALA-SKMPG-----NLKVVFFTNSGTEANELA  174 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~-~~~~~-----~~~~v~f~~sGseA~~~A  174 (480)
                      ++||..|.    .++.+|.+++++.+++....+....+..+...++++.+. +....     +.++|++|+|++||+..+
T Consensus       106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~  181 (546)
T 2zy4_A          106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI  181 (546)
T ss_dssp             HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred             hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence            46665554    357788999988887753323222233455555555443 32221     347899999999999999


Q ss_pred             HHHH--Hhh-cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          175 IMMA--RLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       175 lk~a--r~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ++..  +.. .+++.|++.+++|+++...+.....           |...+++|....+.|..|    .++++++++   
T Consensus       182 ~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~-----------g~~~~~v~~~~~~~~~~d----~~~l~~~~~---  243 (546)
T 2zy4_A          182 FESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQY-----------ALEEVAINADPSLNWQYP----DSELDKLKD---  243 (546)
T ss_dssp             HHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTS-----------CCEEEEEECBGGGTTBCC----HHHHGGGGS---
T ss_pred             HHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCC-----------CcEEEEEecCcccCCCCC----HHHHHHhhC---
Confidence            9863  222 3568899999999998765432110           222222222222223333    456665542   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHH--HHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-c
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI--KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-N  328 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~--~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~  328 (480)
                       .++++|++...+|++|.+. +.+.+++|.++|  ++||+++|+||+|.+|......+... ..+....+.+|||.+| .
T Consensus       244 -~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~-~~~~~i~~~S~SK~~g~~  320 (546)
T 2zy4_A          244 -PAIKIFFCVNPSNPPSVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAI-CPENTLLVYSFSKYFGAT  320 (546)
T ss_dssp             -TTEEEEEEESSCSSSCBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHH-CGGGEEEEEESTTTTTCG
T ss_pred             -CCCeEEEEECCCCCCCccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHh-CCCCEEEEEeCccccCCC
Confidence             3677777777788888765 778899999999  78999999999999886432111111 1123334558999998 7


Q ss_pred             CccccccccCHH-HHHhhcCC------------------------------------CccccCCCcHHHHHHHH--HHHH
Q 011669          329 GIPLGAVVTTPE-IAEVLTRR------------------------------------NYFNTFGGNPVCTAAGH--AVLK  369 (480)
Q Consensus       329 G~pig~v~~~~~-~~~~l~~~------------------------------------~~~~t~~~~~~~~aaa~--a~L~  369 (480)
                      |+|+||++++++ +++.+...                                    ....+.+.+.+.+.++.  +...
T Consensus       321 GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~a  400 (546)
T 2zy4_A          321 GWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFA  400 (546)
T ss_dssp             GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHH
T ss_pred             CcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHH
Confidence            999999999875 66655210                                    01233455666665531  1122


Q ss_pred             Hhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCH----------HHHHHHHHHHHH
Q 011669          370 VIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK----------AETLYIMDKMKE  438 (480)
Q Consensus       370 ~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~----------~~~~~~~~~l~~  438 (480)
                      .+++ +.+.+++++.-+..++.+.+... .+........|+++|+++..-... .+..          .....+.+.+.+
T Consensus       401 ll~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~wl~~~~~~~~~l~~ll~~  478 (546)
T 2zy4_A          401 LMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAK-LYGEAFSEWAVKQSSTGDMLFRIADE  478 (546)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHH-HHCHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcc-cccHHHHHHhhccCCHHHHHHHHHHH
Confidence            2332 34444444333333332322221 222112234466778876310000 0000          012346677889


Q ss_pred             cCceeeccCcC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          439 MGVLVGKGGFY---GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       439 ~Gv~v~~~~~~---~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +||.+.||..|   .+++||++. ..+++++++++++|++++++
T Consensus       479 ~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~  521 (546)
T 2zy4_A          479 TGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADE  521 (546)
T ss_dssp             HSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHH
Confidence            99999998654   368999965 45899999999999988753

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.92  E-value=2e-24  Score=216.87  Aligned_cols=316  Identities=13%  Similarity=0.132  Sum_probs=201.2

Q ss_pred             cccCCCCCHH---HHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCce
Q 011669          110 TVCCGHCHPY---VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND  186 (480)
Q Consensus       110 ~~~lGh~~p~---v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~  186 (480)
                      ..++||++|.   +.+++.+.+...    ..+..+...+++++|+++++.  +.+++++||++|++.+++.++ ..++++
T Consensus         8 ~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~~~~~~-~~~gd~   80 (374)
T 3uwc_A            8 YSYLERQFADIEPYLNDLREFIKTA----DFTLGAELEKFEKRFAALHNA--PHAIGVGTGTDALAMSFKMLN-IGAGDE   80 (374)
T ss_dssp             SCCHHHHTSSCHHHHHHHHHHHHHT----CCSSCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTT-CCTTCE
T ss_pred             eeccccCCCCchHHHHHHHHHHHcC----CcccChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCCCE
Confidence            3444444443   556665555443    234578889999999999965  478999999999999998763 236789


Q ss_pred             EEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCC
Q 011669          187 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGV  266 (480)
Q Consensus       187 ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~  266 (480)
                      |++..++||+........             |...+.++..  ..+..|    .+++++.++    +++++|+  | +++
T Consensus        81 v~~~~~~~~~~~~~~~~~-------------g~~~~~~~~~--~~~~~d----~~~l~~~~~----~~~~~v~--~-~n~  134 (374)
T 3uwc_A           81 VITCANTFIASVGAIVQA-------------GATPVLVDSE--NGYVID----PEKIEAAIT----DKTKAIM--P-VHY  134 (374)
T ss_dssp             EEEESSSCHHHHHHHHHT-------------TCEEEEECBC--TTSSBC----GGGTGGGCC----TTEEEEC--C-BCG
T ss_pred             EEECCCccHHHHHHHHHc-------------CCEEEEEecC--CCCCcC----HHHHHHhCC----CCceEEE--E-eCC
Confidence            999999999876543322             2222222211  112223    345665553    3677777  4 446


Q ss_pred             CcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec----ccccc-CccccccccC-HH
Q 011669          267 GGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVTT-PE  340 (480)
Q Consensus       267 ~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s----K~~g~-G~pig~v~~~-~~  340 (480)
                      +|.+.+    +++|.++|++||+++|+||+|+.+.     .+.....+..+|++++|    |.+++ |. .|+++++ ++
T Consensus       135 ~G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~-----~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~  204 (374)
T 3uwc_A          135 TGNIAD----MPALAKIAKKHNLHIVEDACQTILG-----RINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDE  204 (374)
T ss_dssp             GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTC-----EETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHH
T ss_pred             cCCcCC----HHHHHHHHHHcCCEEEEeCCCccCc-----eeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHH
Confidence            776654    9999999999999999999998432     22233445557988877    99987 75 7888765 45


Q ss_pred             HHHhhcCCC------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe-cc
Q 011669          341 IAEVLTRRN------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-GR  407 (480)
Q Consensus       341 ~~~~l~~~~------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~  407 (480)
                      +++.+....            .+.++..+++.+++++..++.+  +++.++.+++.+++++.|.++...+....... +.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  282 (374)
T 3uwc_A          205 YAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVY  282 (374)
T ss_dssp             HHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEE
T ss_pred             HHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCc
Confidence            655443211            1223344666666665554432  44667777777777777766521011111111 11


Q ss_pred             ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-------------------------CCCEEEEeCCCCCC
Q 011669          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-------------------------YGNVFRITPPLCFT  462 (480)
Q Consensus       408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t  462 (480)
                      ..+..+.+...         ....+.+.|.++||.+.++..                         ..+.+||+++..+|
T Consensus       283 ~~~~~~~~~~~---------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t  353 (374)
T 3uwc_A          283 HVFHIYVLRVK---------YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLT  353 (374)
T ss_dssp             CCCSSEEEEET---------THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSC
T ss_pred             eeeEEEEEEcC---------CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCC
Confidence            11111222111         146788899999999987631                         01689999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011669          463 KEDADYLVDVMDYSLSK  479 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~~  479 (480)
                      ++||++++++|++++++
T Consensus       354 ~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          354 EEEINYIIKKVREFYLE  370 (374)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999999864

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.92  E-value=1.3e-23  Score=211.27  Aligned_cols=318  Identities=12%  Similarity=0.086  Sum_probs=206.7

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC----CCEEEEeCCHHHHHHHHHHHHHh-hcCCceEEEE
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN----LKVVFFTNSGTEANELAIMMARL-YTGCNDIISL  190 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~----~~~v~f~~sGseA~~~Alk~ar~-~~~~~~ii~~  190 (480)
                      .+|+|.+|+.+++..  |.... ......++++++++.+...    .++++|++||++|++.+++.+.. ..++++|+++
T Consensus        16 ~~~~v~~a~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~   92 (385)
T 2bkw_A           16 LSGAVQKALDVPSLG--HTSPE-FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV   92 (385)
T ss_dssp             CCHHHHHTTSCCCCC--TTSHH-HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred             chHHHHHHHhccccc--cCCHH-HHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence            468888887654332  11100 0124567778888887542    47899999999999999997641 1356788888


Q ss_pred             c-CCcccccccccccccCCCccccccCCCeeEecCCC-CcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCc
Q 011669          191 R-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD-PYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGG  268 (480)
Q Consensus       191 ~-~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G  268 (480)
                      + +.||..........            |...+.+|. ..  .+..|    .++|+++++.   +++++|+++++++++|
T Consensus        93 ~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~--~~~~d----~~~l~~~l~~---~~~~~v~~~~~~nptG  151 (385)
T 2bkw_A           93 STGTFSDRFADCLRSY------------GAQVDVVRPLKI--GESVP----LELITEKLSQ---NSYGAVTVTHVDTSTA  151 (385)
T ss_dssp             CSSHHHHHHHHHHHHT------------TCEEEEECCSST--TSCCC----HHHHHHHHHH---SCCSEEEEESEETTTT
T ss_pred             cCCcchHHHHHHHHHc------------CCceEEEecCCC--CCCCC----HHHHHHHHhc---CCCCEEEEEccCCCcC
Confidence            4 45665432222111            222222222 11  12223    6788888863   2578899999999999


Q ss_pred             ceeCCCChHHHHHHHHHHh--CCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHH-
Q 011669          269 IIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAE-  343 (480)
Q Consensus       269 ~~~~~~~~l~~l~~l~~~~--gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~-  343 (480)
                      .+.+    +++|.++|++|  |+++|+||+|+ +|..   .+....+  .+|+++  ++|+++++.++|++++++++++ 
T Consensus       152 ~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~  221 (385)
T 2bkw_A          152 VLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE---EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDY  221 (385)
T ss_dssp             EECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS---CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHH
T ss_pred             eEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc---ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHH
Confidence            8876    99999999999  99999999997 4322   1222222  356664  5799986666799999998876 


Q ss_pred             hhcC----------------------CCc--cc-cCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH-HHh
Q 011669          344 VLTR----------------------RNY--FN-TFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL-TAL  394 (480)
Q Consensus       344 ~l~~----------------------~~~--~~-t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L-~~l  394 (480)
                      .+..                      ...  .. .++.|+.+++++.++|+.+.+.   ...++.+++.+++.+.| +++
T Consensus       222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  301 (385)
T 2bkw_A          222 ALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL  301 (385)
T ss_dssp             HTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5421                      000  01 1356778888888888876543   45666777777777777 554


Q ss_pred             HHhcCcee-eE-e-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---CCCEEEEe-CC---CCCCHH
Q 011669          395 KDKYGIIG-DV-R-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---YGNVFRIT-PP---LCFTKE  464 (480)
Q Consensus       395 ~~~~~~~~-~v-~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~-p~---~~~t~~  464 (480)
                        .+..+. .. . ..+.++++.+.        .   ...+.+.|.++||.+.++..   ..+++||+ .+   +.+|++
T Consensus       302 --g~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e  368 (385)
T 2bkw_A          302 --QLTSVSRYPSNMSAHGLTAVYVA--------D---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLP  368 (385)
T ss_dssp             --CCEESSCSSSTTBCSSCEEEECS--------C---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCT
T ss_pred             --CceecccCcccccCCceEEEecC--------C---HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHH
Confidence              221111 00 0 24677777762        1   45688888899999988643   24789999 44   357999


Q ss_pred             HHHHHHHHHHHHHhhC
Q 011669          465 DADYLVDVMDYSLSKM  480 (480)
Q Consensus       465 ~id~~l~~l~~~l~~~  480 (480)
                      |+++++++|+++++++
T Consensus       369 ~i~~~~~~l~~~~~~~  384 (385)
T 2bkw_A          369 YMKNCFDLIKLALQRK  384 (385)
T ss_dssp             HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988653

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.91  E-value=2.5e-23  Score=210.31  Aligned_cols=310  Identities=14%  Similarity=0.130  Sum_probs=208.2

Q ss_pred             CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccc
Q 011669          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG  196 (480)
Q Consensus       117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG  196 (480)
                      +|++.+++.+++.+..+    +..+...+++++|+++++.  +++++++||++|++.+++.++ ..++++|++.+++|++
T Consensus        19 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~~~   91 (393)
T 1mdo_A           19 GAEELAAVKTVLDSGWI----TTGPKNQELEAAFCRLTGN--QYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVS   91 (393)
T ss_dssp             CHHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHH
T ss_pred             CHHHHHHHHHHHhcCCc----CCChHHHHHHHHHHHHhCC--CcEEEecChHHHHHHHHHHcC-CCCCCEEEeCCCccHh
Confidence            48999999998877422    2467889999999999964  579999999999999999763 2367889999999998


Q ss_pred             ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCCh
Q 011669          197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY  276 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  276 (480)
                      ...... ..            |+..+.++... ..+..|    .+++++.++    +++++|++++   ++|.+.+    
T Consensus        92 ~~~~~~-~~------------g~~~~~v~~~~-~~~~~d----~~~l~~~l~----~~~~~v~~~~---~~G~~~~----  142 (393)
T 1mdo_A           92 TLNMIV-LL------------GANPVMVDVDR-DTLMVT----PEHIEAAIT----PQTKAIIPVH---YAGAPAD----  142 (393)
T ss_dssp             HHHHHH-HT------------TCEEEEECBCT-TTCCBC----HHHHHHHCC----TTEEEECCBC---GGGCCCC----
T ss_pred             HHHHHH-HC------------CCEEEEEeccC-CcCCCC----HHHHHHhcC----CCceEEEEeC---CCCCcCC----
Confidence            654332 22            22222222111 112223    577887775    2678888765   3565544    


Q ss_pred             HHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec----cccccCccccccccC-HHHHHhhcCCCc
Q 011669          277 LPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRRNY  350 (480)
Q Consensus       277 l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~~~  350 (480)
                      +++|.++|++||+++|+||+|+ |+.+.+ ..     .+. +|++++|    |.+++| ++|+++.+ +++++.+.....
T Consensus       143 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~-----~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~  214 (393)
T 1mdo_A          143 LDAIYALGERYGIPVIEDAAHATGTSYKG-RH-----IGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKF  214 (393)
T ss_dssp             HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE-----TTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTB
T ss_pred             HHHHHHHHHHcCCeEEEECccccCCeECC-ee-----cCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHh
Confidence            9999999999999999999998 333333 21     222 7888665    888766 78999986 788776542111


Q ss_pred             -c-------------------cc----CCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee----
Q 011669          351 -F-------------------NT----FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG----  402 (480)
Q Consensus       351 -~-------------------~t----~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~----  402 (480)
                       +                   .+    +..+++.++++.+.++.+  ++..++.+++.+++++.|.++.  +....    
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~~  290 (393)
T 1mdo_A          215 HGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLP--FQPLSLPSW  290 (393)
T ss_dssp             TTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSS--CEECCCCSS
T ss_pred             cCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCC--cccccCCCC
Confidence             0                   01    334778777777766643  3456666667777777776541  11110    


Q ss_pred             eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-----------------------CCEEEEeCCC
Q 011669          403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-----------------------GNVFRITPPL  459 (480)
Q Consensus       403 ~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----------------------~~~iRi~p~~  459 (480)
                      ..++.+.++++.+.....     ......+.+.|.++||.+.++...                       .+.+||++..
T Consensus       291 ~~~~~~~~~~v~~~~~~~-----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~  365 (393)
T 1mdo_A          291 EHIHAWHLFIIRVDEARC-----GITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFP  365 (393)
T ss_dssp             CEECCCSCEEEECCHHHH-----SSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCT
T ss_pred             CCCceeEEEEEEeccccc-----ccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCC
Confidence            123445677887732000     011467888999999999875311                       2379999888


Q ss_pred             CCCHHHHHHHHHHHHHHHhh
Q 011669          460 CFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       460 ~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+|++|+++++++|+++++.
T Consensus       366 ~~t~~~i~~~~~~l~~~~~~  385 (393)
T 1mdo_A          366 DMTESDFDRVITALHQIAGQ  385 (393)
T ss_dssp             TCCHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence            89999999999999998764

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.91  E-value=5.3e-23  Score=208.79  Aligned_cols=291  Identities=14%  Similarity=0.025  Sum_probs=197.3

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      |....+.++...+++++|+++++.+  .+++++||++|++.+++.+.  .++++|++.++.||+...........     
T Consensus        57 ~~~~r~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~~-----  127 (398)
T 1gc0_A           57 HFYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL--RPGDEVLLGNTLYGCTFAFLHHGIGE-----  127 (398)
T ss_dssp             ------CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEESSCCSHHHHHHHHTGGG-----
T ss_pred             CcccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh--cCCCEEEEeCCCchhHHHHHHHHHHH-----
Confidence            3345567899999999999998653  67889999999999999764  36788999999999865543221110     


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                          .|+....++.       .|    .+++++.++    +++++|+++++++++|.+.+    +++|.++|++||+++|
T Consensus       128 ----~g~~~~~~~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li  184 (398)
T 1gc0_A          128 ----FGVKLRHVDM-------AD----LQALEAAMT----PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVV  184 (398)
T ss_dssp             ----GTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEE
T ss_pred             ----cCCEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEE
Confidence                1233222221       12    567777774    37899999999999998875    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeecccccc-Cccc-cccccCHHHHH-hhcCCCcc-ccCCCcHHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNYF-NTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pi-g~v~~~~~~~~-~l~~~~~~-~t~~~~~~~~aaa~a~L  368 (480)
                      +||+|+.+. .+ ..  . .++..+.+.+++|.+++ |.|+ |+++++++.++ .+...... .+...+++.++++.+++
T Consensus       185 ~D~~~~~~~-~~-~~--~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  259 (398)
T 1gc0_A          185 VDNTYCTPY-LQ-RP--L-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGI  259 (398)
T ss_dssp             EECTTTHHH-HC-CG--G-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHH
T ss_pred             EECCCcccc-cC-Cc--h-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhcc
Confidence            999998442 22 11  1 23444555588999995 7888 89999988665 45543333 34567899888888887


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEecCCCcCCCCHHHHH
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKAETL  430 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~~~  430 (480)
                      +.+  +...++..+..+.+.+.|++.    +.+..                  .++.|.++.+++...          ..
T Consensus       260 ~~~--~~~~~~~~~~~~~l~~~L~~~----~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~  323 (398)
T 1gc0_A          260 KTL--NLRMDRHCANAQVLAEFLARQ----PQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG----------IG  323 (398)
T ss_dssp             TTH--HHHHHHHHHHHHHHHHHHHTC----TTEEEEEEC----------------CCTTEEEEEETTH----------HH
T ss_pred             chH--HHHHHHHHHHHHHHHHHHhcC----CCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC----------HH
Confidence            643  233444555555565555542    21111                  135688888887321          23


Q ss_pred             HHHHHHHHcCceeec---cCc-------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          431 YIMDKMKEMGVLVGK---GGF-------------------------YGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       431 ~~~~~l~~~Gv~v~~---~~~-------------------------~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      .+.+.+.+.|+.+..   |+.                         ..+.+||++++..++++|+.+.++|+++
T Consensus       324 ~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          324 AGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             HHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence            455666777877644   211                         1378999999999999999999998864

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.91  E-value=2.2e-23  Score=214.92  Aligned_cols=324  Identities=16%  Similarity=0.133  Sum_probs=197.8

Q ss_pred             CCCHHHHHHHHHHHHh-cccc--ccccC--Ch---HHHHHH-HHHHHhCCCCCCEEEE-eCCHHHHHHHHHHHHHhhcCC
Q 011669          115 HCHPYVVDSIVNQIKR-IQHS--TVLYL--NH---AIADFA-EALASKMPGNLKVVFF-TNSGTEANELAIMMARLYTGC  184 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~-~~~~--~~~~~--~~---~~~~l~-e~L~~~~~~~~~~v~f-~~sGseA~~~Alk~ar~~~~~  184 (480)
                      +.+|+|++|+.+++.+ ..+.  ...+.  ..   ...+++ +++++.++.+  .+.+ ++||++||+.+++.++.  ++
T Consensus        56 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~~~v~~~sGs~a~~~a~~~~~~--~G  131 (447)
T 3h7f_A           56 FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--FANVQPHSGAQANAAVLHALMS--PG  131 (447)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHHHHHHCC--TT
T ss_pred             CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--ceEEEeCCHHHHHHHHHHHhcC--CC
Confidence            4589999999988753 2211  11111  12   335567 8899888643  4555 89999999999998754  67


Q ss_pred             ceEEEEcCCccccc-ccc-cccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEE-c
Q 011669          185 NDIISLRNAYHGNA-AGT-MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS-E  261 (480)
Q Consensus       185 ~~ii~~~~~yhG~~-~~~-~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~-e  261 (480)
                      +.|++.+++|++.. .+. ....+.          .+..++++... ..+..|    .++++++++..   ++++|++ .
T Consensus       132 d~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~-~~~~~d----~~~l~~~i~~~---~~~~i~~~~  193 (447)
T 3h7f_A          132 ERLLGLDLANGGHLTHGMRLNFSGK----------LYENGFYGVDP-ATHLID----MDAVRATALEF---RPKVIIAGW  193 (447)
T ss_dssp             CEEEEECGGGTCCGGGTCTTSHHHH----------SSEEEEECCCT-TTCSCC----HHHHHHHHHHH---CCSEEEEEC
T ss_pred             CEEEecCcccccccchhhhhhhcCC----------eeEEEEcCcCc-ccCCcC----HHHHHHHHHhc---CCeEEEEcC
Confidence            89999999987732 221 111111          11122222110 011134    67888888532   3456666 5


Q ss_pred             ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc-cCccccCCCcccccccCCCccee--eeccccccCccccccccC
Q 011669          262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTT  338 (480)
Q Consensus       262 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~  338 (480)
                      |+++.++       ++++|+++|++||+++|+||+| .|+.+.| ...... .  ..|++  +++|+++ |++.|+++++
T Consensus       194 ~~~~~~~-------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g-~~~~~~-~--~~di~~~s~sK~l~-G~~gG~i~~~  261 (447)
T 3h7f_A          194 SAYPRVL-------DFAAFRSIADEVGAKLLVDMAHFAGLVAAG-LHPSPV-P--HADVVSTTVHKTLG-GGRSGLIVGK  261 (447)
T ss_dssp             SSCCSCC-------CHHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCCST-T--TCSEEEEESSGGGC-CCSCEEEEEC
T ss_pred             CCCCCcc-------CHHHHHHHHHHcCCEEEEECCchhhhhcCC-CCCCCC-C--CCcEEEecCCcCCC-CCCeEEEEEC
Confidence            5554432       5999999999999999999997 5554445 221111 1  23555  6789985 6888999999


Q ss_pred             HHHHHhhcCCCccccCCCc-HHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe--ccceeEE
Q 011669          339 PEIAEVLTRRNYFNTFGGN-PVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVR--GRGFLLG  412 (480)
Q Consensus       339 ~~~~~~l~~~~~~~t~~~~-~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~--g~g~~~~  412 (480)
                      +++++.+......++++++ ...++++.+++..+.+   +++.+++.++.+++.+.|+++....+.+..+.  ..+.+++
T Consensus       262 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~  341 (447)
T 3h7f_A          262 QQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVL  341 (447)
T ss_dssp             GGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEE
T ss_pred             HHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEE
Confidence            9988877654333444443 3335555555655433   34667777778888887766421111122222  2345666


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceee----cc----CcCCCEEEEeCCCC----CCHHHHHHHHHHHHHHHhh
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG----KG----GFYGNVFRITPPLC----FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~----~~~~~~iRi~p~~~----~t~~~id~~l~~l~~~l~~  479 (480)
                      +++.....       ....+.+.|.++||++.    ++    ....+.+||+++..    ++++|+++++++|++++++
T Consensus       342 ~~~~~~~~-------~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          342 VDLRDSPL-------DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT  413 (447)
T ss_dssp             EECTTSSC-------CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred             EEcCCCCC-------CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            66532211       13456666777899988    33    12246799998765    6799999999999998853

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.91  E-value=1.1e-22  Score=211.21  Aligned_cols=316  Identities=17%  Similarity=0.156  Sum_probs=206.9

Q ss_pred             CCCCCHHHHHHHHHHHHhccccccccC--------ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh---
Q 011669          113 CGHCHPYVVDSIVNQIKRIQHSTVLYL--------NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---  181 (480)
Q Consensus       113 lGh~~p~v~~A~~~~~~~~~~~~~~~~--------~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~---  181 (480)
                      .+|.+|++++++.++..   +.+ .|.        .+...++++++++.++.+. .+++++||++|+..|+++++.+   
T Consensus        75 ~~~~~p~v~~~~~~~~~---~~~-~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~  149 (474)
T 1wyu_B           75 TMKYNPKLHEEAARLFA---DLH-PYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHED  149 (474)
T ss_dssp             CCCCCCHHHHHHHHTTS---SCC-TTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHH---hcC-CCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHh
Confidence            35888999998887621   111 122        2456788889998886543 4668899999999999988753   


Q ss_pred             c----CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669          182 T----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (480)
Q Consensus       182 ~----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~  257 (480)
                      .    ++++||+.+ .+|+....+....            |+..+.+|...  .+..|    +++|++.++    +++++
T Consensus       150 ~Gd~~~r~~Vlv~~-~~h~~~~~~~~~~------------G~~vv~v~~~~--~~~~d----~~~L~~~i~----~~t~~  206 (474)
T 1wyu_B          150 RGEGRTRRVVLVPD-SAHGSNPATASMA------------GYQVREIPSGP--EGEVD----LEALKRELG----PHVAA  206 (474)
T ss_dssp             TTCTTTCCEEEEET-TSCTHHHHHHHHT------------TCEEEEECBCT--TSSBC----HHHHHHHCS----TTEEE
T ss_pred             cCCccCCCEEEEeC-CcChhhHHHHHHC------------CCEEEEecCCC--CCCcC----HHHHHHhhC----CCceE
Confidence            1    233788877 4556555544333            22222222111  12123    678888874    36888


Q ss_pred             EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee--cccccc-----Cc
Q 011669          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGN-----GI  330 (480)
Q Consensus       258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~--sK~~g~-----G~  330 (480)
                      |++++.+ ++|.+.   +.+++|.++|++||+++|+||+|..+ ..| .. ....+  .+|++++  +|.+++     |+
T Consensus       207 v~~~~pn-~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g-~~-~~~~~--g~di~~~s~~K~~~~p~g~gG~  277 (474)
T 1wyu_B          207 LMLTNPN-TLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMG-WA-RPGDM--GFDVVHLNLHKTFTVPHGGGGP  277 (474)
T ss_dssp             EEECSSC-TTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTT-TC-CHHHH--TCSEEECCTTTTTCCCCTTSCC
T ss_pred             EEEECCC-CCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hcc-CC-CcccC--CCcEEEEeCccccccCCCCCCC
Confidence            8888754 577662   34999999999999999999999643 233 11 11122  3688765  799862     46


Q ss_pred             cccccccCHHHHHhhcCCC-------------------ccccCCCcHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHH
Q 011669          331 PLGAVVTTPEIAEVLTRRN-------------------YFNTFGGNPVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLK  388 (480)
Q Consensus       331 pig~v~~~~~~~~~l~~~~-------------------~~~t~~~~~~~~aaa~a~L~~i~~~~~---~~~~~~~~~~l~  388 (480)
                      |+|++++++++++.+....                   ...++++|+++++++++.++.+..+.+   .++..++.+++.
T Consensus       278 ~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~  357 (474)
T 1wyu_B          278 GSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLK  357 (474)
T ss_dssp             CCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887765210                   113445788888888888876544444   666777788888


Q ss_pred             HHHHHhHHhcCceeeEecccee--EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---CCCEEEEeCCCCCCH
Q 011669          389 ERLTALKDKYGIIGDVRGRGFL--LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---YGNVFRITPPLCFTK  463 (480)
Q Consensus       389 ~~L~~l~~~~~~~~~v~g~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~~~~t~  463 (480)
                      +.|+++  .+..+   .+.+.+  +++.+ ..       ......+.+.|.++||++.....   ..+++||+++..+|+
T Consensus       358 ~~L~~~--g~~~~---~~~~~~~~~~~~~-~~-------~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~  424 (474)
T 1wyu_B          358 ELLKEK--GYRVP---YDGPSMHEFVAQP-PE-------GFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAK  424 (474)
T ss_dssp             HHHHHT--TCBCS---SCSSCCSCEEEBC-ST-------TCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCH
T ss_pred             HHHhhc--CcEec---CCCCcceEEEEEc-CC-------CCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCH
Confidence            888774  33221   112222  34444 11       11246788889999998632111   147899999988899


Q ss_pred             HHHHHHHHHHHHHHh
Q 011669          464 EDADYLVDVMDYSLS  478 (480)
Q Consensus       464 ~~id~~l~~l~~~l~  478 (480)
                      +++++++++|+++++
T Consensus       425 e~id~~~~~L~~~~~  439 (474)
T 1wyu_B          425 ETLEAFAEAMGALLK  439 (474)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998875

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.91  E-value=9.4e-23  Score=212.85  Aligned_cols=338  Identities=12%  Similarity=0.058  Sum_probs=209.0

Q ss_pred             CCHHHHHHHHHHHHhcc------ccccccCChHHHHHHHHHHHhCC---CCCCEEEEeCCHHHHHHHHHHHHHhhc--CC
Q 011669          116 CHPYVVDSIVNQIKRIQ------HSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEANELAIMMARLYT--GC  184 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~------~~~~~~~~~~~~~l~e~L~~~~~---~~~~~v~f~~sGseA~~~Alk~ar~~~--~~  184 (480)
                      .+..+.+++.+.+.+..      +....+..+...++++.+.++.+   .+.++|++|+|+++|+..++++.....  ++
T Consensus       102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~  181 (498)
T 3ihj_A          102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSR  181 (498)
T ss_dssp             SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGS
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCC
Confidence            35677777777777532      11112223455666666665542   356789999999999999998664311  13


Q ss_pred             ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC-ceEEEEEccc
Q 011669          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG-HVAGFLSESI  263 (480)
Q Consensus       185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~-~~a~vi~epi  263 (480)
                      +.|++..++|..+.......             |...+.++......|+-|    .++|++.++..... ++++|++...
T Consensus       182 d~Vlv~~p~y~~~~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~le~~l~~~~~~~~~k~i~l~np  244 (498)
T 3ihj_A          182 TGVMIPIPQYPLYSAVISEL-------------DAIQVNYYLDEENCWALN----VNELRRAVQEAKDHCDPKVLCIINP  244 (498)
T ss_dssp             EEEEEEESCCTHHHHHHHHT-------------TCEEEEEECBGGGTTBCC----HHHHHHHHHHHTTTSEEEEEEEESS
T ss_pred             CEEEEeCCCchhHHHHHHHc-------------CCEEEEeeccccccCCCC----HHHHHHHHHhhhccCCCeEEEEECC
Confidence            48999999998766544332             222333332222234445    67888888643221 4677777677


Q ss_pred             CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-Cccccccc----------CC-Ccceeeecccc-c-cC
Q 011669          264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAH----------GV-VPDIVTMAKGI-G-NG  329 (480)
Q Consensus       264 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~~~~----------~~-~pDivt~sK~~-g-~G  329 (480)
                      +|++|.+. +.+.+++|.++|++||+++|+||+|..+.+.+. .+..+...          ++ ..-+.+|||.+ | .|
T Consensus       245 ~NPTG~v~-s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G  323 (498)
T 3ihj_A          245 GNPTGQVQ-SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG  323 (498)
T ss_dssp             CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS
T ss_pred             CCCCCCcC-CHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc
Confidence            78888764 777899999999999999999999998765441 12222110          01 11233789999 5 79


Q ss_pred             ccccccc---cCHHHHHhhcCCCccccCCCcHHHHHHHHHHHH-----------Hhhh-hHHHHHHHHHHHHHHHHHHHh
Q 011669          330 IPLGAVV---TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK-----------VIQK-DKLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       330 ~pig~v~---~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~-----------~i~~-~~~~~~~~~~~~~l~~~L~~l  394 (480)
                      +|+||++   .++++++.+.... ....+.+.++++++.++++           .+++ +...+++++..+++.+.|++ 
T Consensus       324 ~R~G~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-  401 (498)
T 3ihj_A          324 YRGGYMEVINLHPEIKGQLVKLL-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ-  401 (498)
T ss_dssp             SCCEEEEEESCCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             cceEEEEEecCCHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999998   6889888776532 2445667888877766663           1111 23334445555555555544 


Q ss_pred             HHhcCceeeEecc-ceeEEEEEecCCCc-----CCCCHHHHHH-HHHHHHHcCceeeccCcCC-----CEEEEeCCCCCC
Q 011669          395 KDKYGIIGDVRGR-GFLLGVEFVTDRQL-----KTPAKAETLY-IMDKMKEMGVLVGKGGFYG-----NVFRITPPLCFT  462 (480)
Q Consensus       395 ~~~~~~~~~v~g~-g~~~~i~~~~~~~~-----~~~~~~~~~~-~~~~l~~~Gv~v~~~~~~~-----~~iRi~p~~~~t  462 (480)
                         ++.+...... |+++|+.+......     ...... ... +.+.|.++||++.+|..++     +++|+++  ..+
T Consensus       402 ---~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~-~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~  475 (498)
T 3ihj_A          402 ---VPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAP-DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPP  475 (498)
T ss_dssp             ---STTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCH-HHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSC
T ss_pred             ---CCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCc-HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCC
Confidence               3444444444 44556555211000     000000 122 3556677899999975443     4899995  589


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011669          463 KEDADYLVDVMDYSLSK  479 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~~  479 (480)
                      ++++++++++|.+++++
T Consensus       476 ~e~l~~~i~~L~~~~~~  492 (498)
T 3ihj_A          476 VEKLKTVLQKVKDFHIN  492 (498)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988764

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.91  E-value=4e-24  Score=217.80  Aligned_cols=319  Identities=14%  Similarity=0.089  Sum_probs=189.5

Q ss_pred             CCCHHHHHHHHHHHHhcc---ccc-----cccCChHHHHHH-HHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCc
Q 011669          115 HCHPYVVDSIVNQIKRIQ---HST-----VLYLNHAIADFA-EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN  185 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~---~~~-----~~~~~~~~~~l~-e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~  185 (480)
                      +.||+|++|+.+++.+..   +..     .....+...+++ +++++.++.+.+.+ +++||++|++.+++.+..  +++
T Consensus        41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v-~~~sGs~a~~~a~~~~~~--~gd  117 (420)
T 3gbx_A           41 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANV-QPHSGSQANFAVYTALLQ--PGD  117 (420)
T ss_dssp             CCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHHCC--TTC
T ss_pred             CCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCcee-EecCcHHHHHHHHHHhcC--CCC
Confidence            468999999999885421   111     111123344444 77888877654444 568889999999987643  677


Q ss_pred             eEEEEcCCccccccccc--ccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEc-c
Q 011669          186 DIISLRNAYHGNAAGTM--GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE-S  262 (480)
Q Consensus       186 ~ii~~~~~yhG~~~~~~--~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~e-p  262 (480)
                      .|++..+.|++......  ...+.          ++..++++..  ..+..|    .++++++++..   ++++|+++ |
T Consensus       118 ~v~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~--~~~~~d----~~~l~~~i~~~---~~~~v~~~~~  178 (420)
T 3gbx_A          118 TVLGMNLAQGGHLTHGSPVNFSGK----------LYNIVPYGID--ESGKID----YDEMAKLAKEH---KPKMIIGGFS  178 (420)
T ss_dssp             EEEEEEEC------------CHHH----------HSEEEEEEEC--TTCSCC----HHHHHHHHHHH---CCSEEEECCT
T ss_pred             EEEecchhhcceeccchhhhhccc----------ceeEEeccCC--ccCCcC----HHHHHHHHHhc---CCeEEEEecC
Confidence            88888777755221111  11110          1122222111  112234    67888888642   46777875 4


Q ss_pred             cCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceee--eccccccCccccccccCH
Q 011669          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTP  339 (480)
Q Consensus       263 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~  339 (480)
                      +++   ...+    +++|+++|++||+++|+||+|. |+.+.| .+...  .. .+|+++  +||+++ |.+.|++++++
T Consensus       179 ~~~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~  246 (420)
T 3gbx_A          179 AYS---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAG-VYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKG  246 (420)
T ss_dssp             TCC---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTT-SSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESS
T ss_pred             ccC---CccC----HHHHHHHHHHcCCEEEEECCcchhceecc-cCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcC
Confidence            432   2333    9999999999999999999974 555445 22211  11 278876  679997 45568999987


Q ss_pred             ---HHHHhhcCCCccccCCCc-HHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe--cccee
Q 011669          340 ---EIAEVLTRRNYFNTFGGN-PVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVR--GRGFL  410 (480)
Q Consensus       340 ---~~~~~l~~~~~~~t~~~~-~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~--g~g~~  410 (480)
                         ++++.+....+.++++++ ...++++.+++..+.+   +++.+++.++.+++++.|.+.    + +..+.  ..+.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~  321 (420)
T 3gbx_A          247 GDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR----G-YKVVSGGTENHL  321 (420)
T ss_dssp             CCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----T-CEEGGGSCSSSE
T ss_pred             CcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----C-CeeccCCCCCeE
Confidence               777766554333334433 3333333334443322   345677777778888777663    2 11222  35667


Q ss_pred             EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec-------cCcC-CCEEEEeCCCC----CCHHHHHHHHHHHHHHHh
Q 011669          411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK-------GGFY-GNVFRITPPLC----FTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-------~~~~-~~~iRi~p~~~----~t~~~id~~l~~l~~~l~  478 (480)
                      +++.+.....       ....+.+.|.++||++.+       +..+ .+.+||+++..    .+++++++++++|+++++
T Consensus       322 ~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~  394 (420)
T 3gbx_A          322 FLLDLVDKNL-------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD  394 (420)
T ss_dssp             EEEECGGGTC-------CHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCC-------CHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHh
Confidence            7777643211       145677788889999987       3222 35699998765    458999999999999876


Q ss_pred             h
Q 011669          479 K  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       395 ~  395 (420)
T 3gbx_A          395 N  395 (420)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.1e-23  Score=213.03  Aligned_cols=323  Identities=12%  Similarity=0.052  Sum_probs=205.9

Q ss_pred             CCCHHHHHHHHHHHHhccccccc-c-CC----hHHHHHHHHHHHhCCCC--CCEEEEeCCHHHHHHHHHHHHHhhc----
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTVL-Y-LN----HAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYT----  182 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~~-~-~~----~~~~~l~e~L~~~~~~~--~~~v~f~~sGseA~~~Alk~ar~~~----  182 (480)
                      |+++.+.+++.+++....+.... + ..    ....+++++++++++.+  .+.+++++||+||+..+++.++.+.    
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~  154 (497)
T 3mc6_A           75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR  154 (497)
T ss_dssp             CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence            56689999999998875432211 1 12    33457778888888755  5689999999999999999987642    


Q ss_pred             C--CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEE
Q 011669          183 G--CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS  260 (480)
Q Consensus       183 ~--~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~  260 (480)
                      +  ++.|++..++|.+....+. ..+.          .+..++...   ..+..|    .++|+++++    +++++|++
T Consensus       155 g~~~~~Vi~~~~~h~~~~~~~~-~~G~----------~~~~v~~~~---~~~~~d----~~~l~~~i~----~~~~~v~~  212 (497)
T 3mc6_A          155 GITEPEIIAPVTAHAGFDKAAY-YFGM----------KLRHVELDP---TTYQVD----LGKVKKFIN----KNTVLLVG  212 (497)
T ss_dssp             CCSSCEEEEETTSCHHHHHHHH-HSCC----------EEEEECBCT---TTCSBC----TTTTGGGCC----SSEEEEEE
T ss_pred             CCCCceEEEeCCccHHHHHHHH-HcCC----------eEEEEecCc---ccCcCC----HHHHHHHHh----hCCEEEEE
Confidence            2  3678888777765433322 2221          122233221   011122    356666664    36899999


Q ss_pred             cccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcccc-----CC-C--cccccccCCCcceee--eccccccCc
Q 011669          261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART-----GS-H--FWGFEAHGVVPDIVT--MAKGIGNGI  330 (480)
Q Consensus       261 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~-----G~-~--~~~~~~~~~~pDivt--~sK~~g~G~  330 (480)
                      +.+++++|.+.+    +++|+++|++||+++|+||+|+++.+.     |. .  .+.+...++  |+++  +.|.+++|.
T Consensus       213 ~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~  286 (497)
T 3mc6_A          213 SAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPK  286 (497)
T ss_dssp             ETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCS
T ss_pred             ECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCC
Confidence            999999998866    889999999999999999999876432     10 1  122333444  6654  459888889


Q ss_pred             cccccccCHHHHHhhcCCC----ccc-----cCC--CcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHH
Q 011669          331 PLGAVVTTPEIAEVLTRRN----YFN-----TFG--GNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKD  396 (480)
Q Consensus       331 pig~v~~~~~~~~~l~~~~----~~~-----t~~--~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~  396 (480)
                      ++|+++++++.+.......    ..+     ++.  .+....++..++++.+.++   +..++..++.+++++.|++.  
T Consensus       287 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--  364 (497)
T 3mc6_A          287 GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN--  364 (497)
T ss_dssp             SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            9999999877655432111    111     111  1223344455555555443   44556666777777777662  


Q ss_pred             hcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          397 KYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       397 ~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                       .+.+..+ ...+.++.+...  .       .....+.+.|.++||.+..+. ..+.+|++++ .+|++++++++++|++
T Consensus       365 -~~g~~~~~~~~~~~v~~~~~--~-------~~~~~l~~~L~~~Gi~v~~~~-~~~~~ri~~~-~~t~e~i~~~~~~L~~  432 (497)
T 3mc6_A          365 -IPDLDIMGNPRYSVISFSSK--T-------LNIHELSDRLSKKGWHFNALQ-KPVALHMAFT-RLSAHVVDEICDILRT  432 (497)
T ss_dssp             -CTTCEECSCCCSSEEEEECT--T-------TTHHHHHHHHHTTTCBCEECC-SSCCEEEECC-TTTTCTHHHHHHHHHH
T ss_pred             -CCCEEEecCCCeeEEEEeCC--C-------CCHHHHHHHHHhCCEEEecCC-CCCeEEEEEe-CCCHHHHHHHHHHHHH
Confidence             2222222 234445544421  1       125678899999999987654 2356899988 7899999999999999


Q ss_pred             HHhh
Q 011669          476 SLSK  479 (480)
Q Consensus       476 ~l~~  479 (480)
                      ++++
T Consensus       433 ~l~~  436 (497)
T 3mc6_A          433 TVQE  436 (497)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.90  E-value=1.3e-22  Score=206.95  Aligned_cols=330  Identities=13%  Similarity=0.081  Sum_probs=193.4

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhc-cccc--cc-cC----ChHHHHHH-HHHHHhCCCCCCEE-EEeCCHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHST--VL-YL----NHAIADFA-EALASKMPGNLKVV-FFTNSGTEA  170 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~-~~~~--~~-~~----~~~~~~l~-e~L~~~~~~~~~~v-~f~~sGseA  170 (480)
                      .+++.++..     +.||+|++|+.+++.+. .+..  .. +.    .+...+++ +.+++.++.  +.+ ++++||++|
T Consensus        34 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~v~~~~Gs~a  106 (425)
T 3ecd_A           34 QVELIASEN-----IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA--GHANVQPHSGAQA  106 (425)
T ss_dssp             SEECCTTCC-----CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC--SEEECCCSSHHHH
T ss_pred             ceeeecccC-----CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC--CCceeecCchHHH
Confidence            466655432     45899999999988532 1111  11 11    12445555 667777754  334 469999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccc-cccccc-cccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGN-AAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~-~~~~~~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      ++.+++.+.  .+++.|++.+++|++. ..+... ..+.          ++..++++... ..+..|    .++++++++
T Consensus       107 ~~~al~~~~--~~gd~Vi~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~-~~~~~d----~~~l~~~i~  169 (425)
T 3ecd_A          107 NGAVMLALA--KPGDTVLGMSLDAGGHLTHGAKPALSGK----------WFNALQYGVSR-DTMLID----YDQVEALAQ  169 (425)
T ss_dssp             HHHHHHHHC--CTTCEEEEECC----------------------------CEEEEECCCT-TTSSCC----HHHHHHHHH
T ss_pred             HHHHHHHcc--CCCCEEEEcccccccceecchhhhhccc----------ceeeeecCCCc-ccCccC----HHHHHHHHh
Confidence            999999773  4778999999999872 222211 1110          12222222110 112234    678888886


Q ss_pred             ccCCCceEEEEEc-ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc-cCccccCCCcccccccCCCccee--eecc
Q 011669          249 FGTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIV--TMAK  324 (480)
Q Consensus       249 ~~~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-tgfgr~G~~~~~~~~~~~~pDiv--t~sK  324 (480)
                      ..   ++++|+++ |++|       ....+++|+++|++||+++|+||+| .|+.+.| ..+...  . .+|++  ++||
T Consensus       170 ~~---~~~~v~~~~~~~~-------~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~-~~~~~~--~-~~di~~~s~sK  235 (425)
T 3ecd_A          170 QH---KPSLIIAGFSAYP-------RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAG-RHANPV--E-HAHVVTSTTHK  235 (425)
T ss_dssp             HH---CCSEEEEECSCCC-------SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT-SSCCGG--G-TCSEEEEESSG
T ss_pred             hc---CCcEEEEccccCC-------CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcc-cccCch--h-cCcEEEecCCc
Confidence            32   46778887 4442       3345899999999999999999995 5555555 222211  1 15665  5679


Q ss_pred             ccccCccccccccC-HHHHHhhcCCCccccC-CCcHHHHHHHHHHHH-Hhhh--hHHHHHHHHHHHHHHHHHHHhHHhcC
Q 011669          325 GIGNGIPLGAVVTT-PEIAEVLTRRNYFNTF-GGNPVCTAAGHAVLK-VIQK--DKLQNNAHVVGSYLKERLTALKDKYG  399 (480)
Q Consensus       325 ~~g~G~pig~v~~~-~~~~~~l~~~~~~~t~-~~~~~~~aaa~a~L~-~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~  399 (480)
                      ++ +|+++||++++ +++.+.+......+.. +.++..++++.+++. .+.+  +++.++.+++.+++++.|.+.  .+.
T Consensus       236 ~l-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  312 (425)
T 3ecd_A          236 TL-RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG--GVD  312 (425)
T ss_dssp             GG-CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCE
T ss_pred             cc-CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC--CCe
Confidence            99 55688999998 5676666543222222 333434444444443 3323  356777888888888887763  111


Q ss_pred             ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee----ccC----cCCCEEEEeCCCCCC----HHHHH
Q 011669          400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG----KGG----FYGNVFRITPPLCFT----KEDAD  467 (480)
Q Consensus       400 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~----~~~~~iRi~p~~~~t----~~~id  467 (480)
                      .+. ..+.+.++++.+....       .....+.+.|.++||++.    ++.    ...+.+||+++...+    +++++
T Consensus       313 ~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~  384 (425)
T 3ecd_A          313 LVT-GGTDNHLLLVDLRPKG-------LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFR  384 (425)
T ss_dssp             EGG-GSCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHH
T ss_pred             ecc-CCCCceEEEEEeCCCC-------CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHH
Confidence            111 1135667777764321       114567788889999998    431    113579999665544    99999


Q ss_pred             HHHHHHHHHHhh
Q 011669          468 YLVDVMDYSLSK  479 (480)
Q Consensus       468 ~~l~~l~~~l~~  479 (480)
                      +++++|++++++
T Consensus       385 ~~~~~l~~~l~~  396 (425)
T 3ecd_A          385 EVGRLILEVFEA  396 (425)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999988753

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.90  E-value=1e-23  Score=210.47  Aligned_cols=316  Identities=14%  Similarity=0.038  Sum_probs=194.7

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH  195 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yh  195 (480)
                      .||+|.+|+.+.+..    ...+..+...+++++|+++++.  +..+|++||++|++.+++.+... ++..+|+..+.+|
T Consensus        27 ~~p~v~~ai~~~~~~----~~~~~~~~~~~l~~~la~~~~~--~~~i~~~~g~~a~~~a~~~~~~~-g~~~vvi~~~~~~   99 (359)
T 3pj0_A           27 VLTEALQNIDDNLES----DIYGNGAVIEDFETKIAKILGK--QSAVFFPSGTMAQQIALRIWADR-KENRRVAYHPLSH   99 (359)
T ss_dssp             HHHHHTTTSCTTCBC----CBTTBSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHHHH-HTCCEEEECTTCH
T ss_pred             CCHHHHHHHHhhccc----CcccCCHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHHhc-CCCcEEEEeccce
Confidence            367888887763322    2234567889999999999854  44567799999999999987653 3334666666665


Q ss_pred             cccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCC
Q 011669          196 GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPG  275 (480)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~  275 (480)
                      ...........         ..|...+.+|..   .+..|    .++++++     .+++++|++++++|++|...++.+
T Consensus       100 ~~~~~~~~~~~---------~~g~~~~~v~~~---~~~~d----~~~l~~~-----~~~~~~v~~~~p~n~~~G~~~~~~  158 (359)
T 3pj0_A          100 LEIHEQDGLKE---------LQQITPLLLGTA---NQLLT----IDDIKSL-----REPVSSVLIELPQREIGGQLPAFE  158 (359)
T ss_dssp             HHHSSTTHHHH---------HHCCEEEECSCT---TSCCC----HHHHHTC-----SSCCSEEEEESSBGGGTSBCCCHH
T ss_pred             eeehhcchHHH---------hcCceEEecCCc---CCCcC----HHHHHhc-----cCCceEEEEEecccCCCcccCCHH
Confidence            43322111100         012333333321   12223    4566554     246888999887766533446888


Q ss_pred             hHHHHHHHHHHhCCEEEEcccccCcc--ccCCCcccccccCCCccee--eeccccccCccccccccCHHHHHhhcCC--C
Q 011669          276 YLPAVYKSIKKAGGLCIADEVQAGFA--RTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRR--N  349 (480)
Q Consensus       276 ~l~~l~~l~~~~gillI~DEv~tgfg--r~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~--~  349 (480)
                      ++++|.++|++||+++|+||+|..+.  ..|...   .......|++  ++||+++++.. |++++++++++.+...  .
T Consensus       159 ~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~  234 (359)
T 3pj0_A          159 ELEKISEYCHEQGISLHLDGARLWEITPFYQKSA---EEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRR  234 (359)
T ss_dssp             HHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCH---HHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCEEEEECcchhcchhhhCCCH---HHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHH
Confidence            99999999999999999999986332  112111   0111223555  78999986544 7888999998877642  1


Q ss_pred             cc-ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee--EeccceeEEEEEecCCCcCCCCH
Q 011669          350 YF-NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD--VRGRGFLLGVEFVTDRQLKTPAK  426 (480)
Q Consensus       350 ~~-~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--v~g~g~~~~i~~~~~~~~~~~~~  426 (480)
                      .. .++..++.+ +++.++++..  .+..++..+..+++.+.|+++    +.+..  ....+.++++.+..      +..
T Consensus       235 ~~~~~~~~~~~~-~a~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~------~~~  301 (359)
T 3pj0_A          235 YGGDLISLYPYI-LSADYYFEKR--IGKMAEYFEAAKGLAERFNSC----SGVKTVPEVPVSNMFHVYFEN------SAD  301 (359)
T ss_dssp             TTCCCSCCHHHH-HHHHHHHHHH--GGGHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEEESS------CHH
T ss_pred             hCCCcchhHHHH-HHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhC----CCceeeccCCcceEEEEEecC------ccc
Confidence            12 333344444 4444566533  233444566666666666553    33322  23456677777632      112


Q ss_pred             HHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCC---CCCHHHHHHHHHHHHHH
Q 011669          427 AETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPL---CFTKEDADYLVDVMDYS  476 (480)
Q Consensus       427 ~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~---~~t~~~id~~l~~l~~~  476 (480)
                      .....+.+.|.++||++.++..+    .+++|++...   ..+.+++++++++|.++
T Consensus       302 ~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          302 EIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             HHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            23567888999999999987432    2578987542   36899999999999875

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.90  E-value=3e-22  Score=202.58  Aligned_cols=310  Identities=13%  Similarity=0.020  Sum_probs=199.8

Q ss_pred             CCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcC
Q 011669          113 CGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN  192 (480)
Q Consensus       113 lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~  192 (480)
                      +.+.+++..+++.+. ....+....+.++...+++++|+++++.+  .+++++||++|++.+++.+.  .++++|++.++
T Consensus        32 ~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~--~~gd~vl~~~~  106 (389)
T 3acz_A           32 FCFDSTQQGADLFMG-KGEGHIYSRLGNPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFL--QKGDHLIAGDT  106 (389)
T ss_dssp             BCCSSHHHHHHHHTT-CSSCCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTC--CTTCEEEEESS
T ss_pred             eecCChHHHHHhhcC-CCCCcccCCCCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh--CCCCEEEEeCC
Confidence            345565544433222 12234455677899999999999998653  67888999999999998653  36789999999


Q ss_pred             CcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeC
Q 011669          193 AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL  272 (480)
Q Consensus       193 ~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  272 (480)
                      .||+..........         ..|+....++.       .|    .+++++.++    +++++|++|+++|++|.+.+
T Consensus       107 ~y~~~~~~~~~~~~---------~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~  162 (389)
T 3acz_A          107 LYGCTVSLFTHWLP---------RFGIEVDLIDT-------SD----VEKVKAAWK----PNTKMVYLESPANPTCKVSD  162 (389)
T ss_dssp             CCHHHHHHHHHHHH---------HTTCEEEEECT-------TC----HHHHHHTCC----TTEEEEEEESSCTTTCCCCC
T ss_pred             CchHHHHHHHHHHH---------HcCCEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCeecC
Confidence            99985443211000         01333322221       12    567777764    37899999999999998876


Q ss_pred             CCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eecccccc-Cccc-cccccCH-HHHHhhcC
Q 011669          273 APGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTP-EIAEVLTR  347 (480)
Q Consensus       273 ~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pi-g~v~~~~-~~~~~l~~  347 (480)
                          +++|.++|++||+++|+||+|+++. .+ ..  +   +..+|++  +++|.+++ |.|+ |++++++ ++++.+..
T Consensus       163 ----l~~i~~~~~~~~~~livD~~~~~~~-~~-~~--~---~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~  231 (389)
T 3acz_A          163 ----IKGIAVVCHERGARLVVDATFTSPC-FL-KP--L---ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKF  231 (389)
T ss_dssp             ----HHHHHHHHHHHTCEEEEECTTTCTT-TC-CG--G---GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCEEEEECCCcccc-cc-Cc--c---ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHH
Confidence                9999999999999999999998542 22 11  1   2357777  78899995 6898 9999998 88877764


Q ss_pred             CCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH----------HhcCcee----eEeccceeEEE
Q 011669          348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK----------DKYGIIG----DVRGRGFLLGV  413 (480)
Q Consensus       348 ~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~----------~~~~~~~----~v~g~g~~~~i  413 (480)
                      .........+|+.+.++++.|+.+.  ...++..+....+.+.|++..          ..++.+.    ..++.|.++.+
T Consensus       232 ~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~  309 (389)
T 3acz_A          232 YRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLF  309 (389)
T ss_dssp             HHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE
T ss_pred             HHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEE
Confidence            3322233457888887777776432  223344444455555554431          0011000    11456788888


Q ss_pred             EEecCCCcCCCCHHHHHHHHHHHHHcCceeecc--C--------------------------cCCCEEEEeCCCCCCHHH
Q 011669          414 EFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG--G--------------------------FYGNVFRITPPLCFTKED  465 (480)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~~~  465 (480)
                      ++..           ...+.+.+.+.|+++...  |                          ...+.+||+++..    +
T Consensus       310 ~l~~-----------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~  374 (389)
T 3acz_A          310 EMKS-----------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----N  374 (389)
T ss_dssp             EESS-----------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----C
T ss_pred             EECC-----------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----C
Confidence            8731           234556666778877652  1                          1147899997765    5


Q ss_pred             HHHHHHHHHHHHhh
Q 011669          466 ADYLVDVMDYSLSK  479 (480)
Q Consensus       466 id~~l~~l~~~l~~  479 (480)
                      +++.++.|.+++++
T Consensus       375 ~~~li~~l~~al~~  388 (389)
T 3acz_A          375 VDDIIADLKQALEL  388 (389)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            56666666666654

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.90  E-value=1.4e-23  Score=209.49  Aligned_cols=335  Identities=13%  Similarity=0.041  Sum_probs=201.6

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccC-ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL-NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~-~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Al  175 (480)
                      |+|+|.++...-..+| .||.+.+++.++++...  .....|. ++...+|+++|+++++.  +..++++||++|++.++
T Consensus         3 ~~~~~~~~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~--~~~i~~~~G~~a~~~al   79 (357)
T 3lws_A            3 NRLRTSFQQTTGQISG-HGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM--DDAVFFPSGTMAQQVAL   79 (357)
T ss_dssp             CHHHHHHHTCSEESSB-SSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHH
T ss_pred             chhhhHHHhhcccccC-CCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHH
Confidence            4456533333333344 36788888888777632  1112333 46788999999999864  45567799999999999


Q ss_pred             HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (480)
                      +.+... +++++|+..+.+|...........         ..|+..++++..   .+..|    .++++++     . ++
T Consensus        80 ~~~~~~-gd~~~vi~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~---~~~~d----~~~l~~~-----~-~~  136 (357)
T 3lws_A           80 RIWSDE-TDNRTVAYHPLCHLEIHEQDGLKE---------LHPIETILVGAA---DRLMT----LDEIKAL-----P-DI  136 (357)
T ss_dssp             HHHHHH-HTCCEEEECTTCHHHHSSTTHHHH---------HSSCEEEECSCT---TSCCC----HHHHHTC-----C-SC
T ss_pred             HHHhhc-CCCcEEEecccceeeeeccchhhh---------ccCcEEEEecCC---CCCcC----HHHHhcC-----c-Cc
Confidence            987653 222266666666654332110000         013334443321   11123    4555544     2 37


Q ss_pred             EEEEEcccCCCC-cceeCCCChHHHHHHHHHHhCCEEEEcccccC--ccccCCCcccccccCCCcc--eeeeccccccCc
Q 011669          256 AGFLSESIQGVG-GIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGVVPD--IVTMAKGIGNGI  330 (480)
Q Consensus       256 a~vi~epi~~~~-G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg--fgr~G~~~~~~~~~~~~pD--ivt~sK~~g~G~  330 (480)
                      ++|++++++|++ |. .++.+++++|.++|++||+++|+||+|..  .+..|.....+.   ...|  +.++||++++..
T Consensus       137 ~~v~~~~p~np~~G~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~  212 (357)
T 3lws_A          137 ACLLLELPQREIGGV-APAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYISFYKGLGGIA  212 (357)
T ss_dssp             SEEEEESSBGGGTSB-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEEESSSTTCCSS
T ss_pred             ceEEEEcccccCCce-eCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEEeccccCCCCc
Confidence            788888877775 65 46888999999999999999999999751  111121111111   1133  448999996432


Q ss_pred             cccccccCHHHHHhhcCCC--cc-ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee--Ee
Q 011669          331 PLGAVVTTPEIAEVLTRRN--YF-NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD--VR  405 (480)
Q Consensus       331 pig~v~~~~~~~~~l~~~~--~~-~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--v~  405 (480)
                      . |++++++++++.+....  .. ..+..++. ++++.++|+...  +..++..+..+++.+.|+++    +.+..  ..
T Consensus       213 g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~  284 (357)
T 3lws_A          213 G-AILAGPAAFCQTARIWKRRYGGDLISLYPY-IVSADYYYELRK--DRMGQYYEQAKQLAEQFNAL----PGVHTTPEV  284 (357)
T ss_dssp             C-EEEEECHHHHHHHHHHHHHTTCCCSCCHHH-HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTS----TTEEEESSS
T ss_pred             e-EEEEcCHHHHHHHHHHHHHhcCCcccchHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhC----CCCeeccCC
Confidence            2 89999999888775321  22 22333343 444556665421  22333455556666666543    33332  24


Q ss_pred             ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---CCEEEEeCC---CCCCHHHHHHHHHHHHHHH
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---GNVFRITPP---LCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---~~~iRi~p~---~~~t~~~id~~l~~l~~~l  477 (480)
                      ..+.++++++...      .......+.+.|.++||++.++..+   ..++|++..   +..+++++++++++|.+++
T Consensus       285 ~~~~~~~~~~~~~------~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          285 PVSNMFHLHFDGQ------AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             CSSSEEEEEEESC------HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             CcceEEEEEecCC------hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            5677888887431      1122466788899999999887322   247899765   3368999999999998875

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.90  E-value=1.7e-22  Score=205.38  Aligned_cols=289  Identities=15%  Similarity=0.058  Sum_probs=191.8

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCC
Q 011669          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~  217 (480)
                      ..++...+++++++++++.  +++++++||++|+..+++...  .+++.|++.++.|++.........         ...
T Consensus        59 ~~~~~~~~l~~~ia~~~g~--~~~i~~~~g~~ai~~~~~~l~--~~gd~Vl~~~~~y~~~~~~~~~~~---------~~~  125 (404)
T 1e5e_A           59 LGNPTVSNLEGKIAFLEKT--EACVATSSGMGAIAATVLTIL--KAGDHLISDECLYGCTHALFEHAL---------TKF  125 (404)
T ss_dssp             TCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHH---------HHT
T ss_pred             CcChHHHHHHHHHHHHhCC--CcEEEeCChHHHHHHHHHHHh--CCCCEEEEeCCCchhHHHHHHHHH---------HHc
Confidence            4467788999999999865  478899999999999998653  367889999999987544211000         001


Q ss_pred             CeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH-hCCEEEEccc
Q 011669          218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AGGLCIADEV  296 (480)
Q Consensus       218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~gillI~DEv  296 (480)
                      |+....+|..       |    .+++++.++    +++++|++++++|++|.+.+    +++|.++|++ ||+++|+||+
T Consensus       126 g~~~~~v~~~-------d----~~~l~~~i~----~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~  186 (404)
T 1e5e_A          126 GIQVDFINTA-------I----PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNT  186 (404)
T ss_dssp             TCEEEEECTT-------S----TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECT
T ss_pred             CCEEEEECCC-------C----HHHHHHhcC----CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECC
Confidence            3333333221       2    357777774    36899999999999998875    9999999999 9999999999


Q ss_pred             ccCccccCCCcccccccCCCcceeeecccccc-Cccc-cccccCHHHHH-hhcCCCccc-cCCCcHHHHHHHHHHHHHhh
Q 011669          297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNYFN-TFGGNPVCTAAGHAVLKVIQ  372 (480)
Q Consensus       297 ~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pi-g~v~~~~~~~~-~l~~~~~~~-t~~~~~~~~aaa~a~L~~i~  372 (480)
                      |+.+...  ..  .+ ++....+.++||.+++ |+|+ ||+++++++++ .+....... +.+.+++.+.++.++|+.+ 
T Consensus       187 ~~~~~~~--~~--~~-~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~-  260 (404)
T 1e5e_A          187 FCSPMIT--NP--VD-FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL-  260 (404)
T ss_dssp             TTCTTTC--CG--GG-GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH-
T ss_pred             CchhhhC--Cc--cc-cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHH-
Confidence            9876432  11  12 3433334478999994 8998 99999999887 776654433 4567899988888888643 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhH----HhcCcee----------eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHH
Q 011669          373 KDKLQNNAHVVGSYLKERLTALK----DKYGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKE  438 (480)
Q Consensus       373 ~~~~~~~~~~~~~~l~~~L~~l~----~~~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~  438 (480)
                       +...++..+..+.+.+.+++..    ..++.+.          ..++.|.|+.+++..        .  ...+.+.+.+
T Consensus       261 -~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~--------~--~~~~~~~l~~  329 (404)
T 1e5e_A          261 -NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS--------G--FEGAKKLLDN  329 (404)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT--------H--HHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC--------C--HHHHHHHHHh
Confidence             2233333444444444444321    0011110          123458888887621        1  2335556677


Q ss_pred             cCceeecc--C--------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          439 MGVLVGKG--G--------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       439 ~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .||++...  |                          ...+++||+++.    ++++++++.|+++++.
T Consensus       330 ~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~  394 (404)
T 1e5e_A          330 LKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDA  394 (404)
T ss_dssp             CSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             CCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHH
Confidence            88854331  1                          114789999775    7889999999888754

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.90  E-value=2e-22  Score=202.09  Aligned_cols=309  Identities=16%  Similarity=0.098  Sum_probs=200.8

Q ss_pred             CCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHh-hcCCceEEEEcCC
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL-YTGCNDIISLRNA  193 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~-~~~~~~ii~~~~~  193 (480)
                      ..+|+|.+|+.+++....    .++.+...+++++|+++++.  +++++++||++|++.+++.++. ..++++|++.+++
T Consensus        10 ~~~~~v~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~   83 (375)
T 2fnu_A           10 CLDKEDKKAVLEVLNSKQ----LTQGKRSLLFEEALCEFLGV--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPIS   83 (375)
T ss_dssp             CCCHHHHHHHHHHHTSSC----CSSSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSS
T ss_pred             CCCHHHHHHHHHHHHcCc----ccCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCc
Confidence            467999999999887532    12357788999999999964  4899999999999999997731 2356799999999


Q ss_pred             cccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCC
Q 011669          194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA  273 (480)
Q Consensus       194 yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  273 (480)
                      ||+........             |+..+.++....+.  .|    .+++++.++    +++++|++.+.   +|.+.+ 
T Consensus        84 ~~~~~~~~~~~-------------g~~~~~~~~~~~~~--~d----~~~l~~~i~----~~~~~v~~~~~---tG~~~~-  136 (375)
T 2fnu_A           84 FVATANMLLES-------------GYTPVFAGIKNDGN--ID----ELALEKLIN----ERTKAIVSVDY---AGKSVE-  136 (375)
T ss_dssp             CTHHHHHHHHT-------------TCEEEECCBCTTSS--BC----GGGSGGGCC----TTEEEEEEECG---GGCCCC-
T ss_pred             cHhHHHHHHHC-------------CCEEEEeccCCCCC--CC----HHHHHhhcC----cCceEEEEeCC---cCCccC-
Confidence            99876654332             22222222111111  12    345655553    25676555444   677665 


Q ss_pred             CChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCC--cceeeec--cccccCcccccccc-C-HHHHHhhcC
Q 011669          274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV--PDIVTMA--KGIGNGIPLGAVVT-T-PEIAEVLTR  347 (480)
Q Consensus       274 ~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~--pDivt~s--K~~g~G~pig~v~~-~-~~~~~~l~~  347 (480)
                         +++|.++|++||+++|+||+|+. |...    .....+..  .++.++|  |.++.|  +|++++ + +++++.+..
T Consensus       137 ---l~~i~~l~~~~~~~li~D~a~~~-~~~~----~~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~  206 (375)
T 2fnu_A          137 ---VESVQKLCKKHSLSFLSDSSHAL-GSEY----QNKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKL  206 (375)
T ss_dssp             ---HHHHHHHHHHHTCEEEEECTTCT-TCEE----TTEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHH
T ss_pred             ---HHHHHHHHHHcCCEEEEECcccc-CCeE----CCeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHH
Confidence               89999999999999999999973 3221    11112222  3445788  999664  788877 3 677665543


Q ss_pred             CC----------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE------e
Q 011669          348 RN----------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------R  405 (480)
Q Consensus       348 ~~----------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------~  405 (480)
                      ..                .+.+++.+++.+++++..++.+  ++..++.+++.+++.+.|+++    +.+...      +
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~  280 (375)
T 2fnu_A          207 FRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDK  280 (375)
T ss_dssp             HTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSC
T ss_pred             HHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC----CCccccCCCCCCC
Confidence            21                1122356677766666554432  345666777777777776653    222111      1


Q ss_pred             ccceeEEEEEecCCCcCCCCHH-HHHHHHHHHHHcCceeecc----C---cC----------------CCEEEEeCCCCC
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKA-ETLYIMDKMKEMGVLVGKG----G---FY----------------GNVFRITPPLCF  461 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~~Gv~v~~~----~---~~----------------~~~iRi~p~~~~  461 (480)
                      +.+.++++.+...       .. ....+.+.|.++||.+...    .   .+                .+.+||+++..+
T Consensus       281 ~~~~~~~~~~~~~-------~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~  353 (375)
T 2fnu_A          281 SSNHLYPILMHQK-------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANL  353 (375)
T ss_dssp             CCCSCEEEEECGG-------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTC
T ss_pred             cceEEEEEEeCcc-------ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCC
Confidence            2234556666321       01 2467888899999998721    0   01                167999999889


Q ss_pred             CHHHHHHHHHHHHHHHhh
Q 011669          462 TKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       462 t~~~id~~l~~l~~~l~~  479 (480)
                      |++|+++++++|++++++
T Consensus       354 t~~~i~~~~~~l~~~~~~  371 (375)
T 2fnu_A          354 NLESVQNIAHSVLKTFES  371 (375)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999999998764

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.90  E-value=7.2e-23  Score=205.35  Aligned_cols=312  Identities=14%  Similarity=0.092  Sum_probs=201.4

Q ss_pred             cCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEc
Q 011669          112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (480)
Q Consensus       112 ~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~  191 (480)
                      ++|+++|.+.+++.+++.+.......+..+...+++++|+++++.  +.+++++||++|++.|++.++ ..++++|++..
T Consensus         6 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~sGt~al~~al~~~~-~~~gd~Vi~~~   82 (367)
T 3nyt_A            6 DLKNQQARIKDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGA--KYCISCANGTDALQIVQMALG-VGPGDEVITPG   82 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEES
T ss_pred             cccccccccCHHHHHHHHHHHhcCCccCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhC-CCCcCEEEECC
Confidence            345666555444444443321111234578889999999999964  479999999999999999774 23678999999


Q ss_pred             CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCccee
Q 011669          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (480)
Q Consensus       192 ~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~  271 (480)
                      ++|++........             |...+.++... ..+..|    .++++++++    +++++|+.++   ++|...
T Consensus        83 ~~~~~~~~~~~~~-------------G~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~  137 (367)
T 3nyt_A           83 FTYVATAETVALL-------------GAKPVYVDIDP-RTYNLD----PQLLEAAIT----PRTKAIIPVS---LYGQCA  137 (367)
T ss_dssp             SSCTHHHHHHHHT-------------TCEEEEECBCT-TTCSBC----GGGTGGGCC----TTEEEECCBC---GGGCCC
T ss_pred             CccHHHHHHHHHc-------------CCEEEEEecCC-ccCCcC----HHHHHHhcC----cCCcEEEeeC---CccChh
Confidence            9998866554333             22222221110 012223    455666653    3788888443   455444


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec----ccccc-CccccccccC-HHHHHh
Q 011669          272 LAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVTT-PEIAEV  344 (480)
Q Consensus       272 ~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s----K~~g~-G~pig~v~~~-~~~~~~  344 (480)
                      +    +++|.++|++||+++|+||+|+ |..+.| .     ..+...|++++|    |.+++ |. .|+++.+ +++++.
T Consensus       138 ~----~~~i~~la~~~~~~li~D~a~~~g~~~~~-~-----~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~  206 (367)
T 3nyt_A          138 D----FDAINAIASKYGIPVIEDAAQSFGASYKG-K-----RSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATA  206 (367)
T ss_dssp             C----HHHHHHHHHHTTCCBEEECTTTTTCEETT-E-----ETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHH
T ss_pred             h----HHHHHHHHHHcCCEEEEECccccCCeECC-e-----eccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHH
Confidence            3    9999999999999999999997 232223 1     122233888776    99997 76 7888874 677766


Q ss_pred             hcCCC------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee-EeccceeE
Q 011669          345 LTRRN------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD-VRGRGFLL  411 (480)
Q Consensus       345 l~~~~------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~  411 (480)
                      +....            .+.++..+++.++++++.++.+  +++.++.+++.+++++.|.++.-..+.... .......+
T Consensus       207 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  284 (367)
T 3nyt_A          207 IRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQY  284 (367)
T ss_dssp             HHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSE
T ss_pred             HHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEE
Confidence            54321            1346778899999998888754  456677788888888888776211111100 11111122


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--------C--------------CCEEEEeCCCCCCHHHHHHH
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--------Y--------------GNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~--------------~~~iRi~p~~~~t~~~id~~  469 (480)
                      .+.+.           ....+.+.|.++||.+.+...        +              ...+|+......|++|++.+
T Consensus       285 ~~~~~-----------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v  353 (367)
T 3nyt_A          285 TVRMD-----------NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKII  353 (367)
T ss_dssp             EEECS-----------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred             EEEeC-----------CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHH
Confidence            33221           146788899999998875421        1              24789988888999999999


Q ss_pred             HHHHHH
Q 011669          470 VDVMDY  475 (480)
Q Consensus       470 l~~l~~  475 (480)
                      ++.|++
T Consensus       354 ~~~~~~  359 (367)
T 3nyt_A          354 CAALTN  359 (367)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            999875

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.90  E-value=8.7e-23  Score=208.04  Aligned_cols=295  Identities=17%  Similarity=0.119  Sum_probs=194.5

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      |....|.++...+|+++|+++.+  .+.+++++||++|++.+++.+.  .+++.||+.+++||+.........       
T Consensus        73 ~~y~r~~~p~~~~l~~~la~~~g--~~~~~~~~sG~~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~~-------  141 (414)
T 3ndn_A           73 YVYSRYGNPTVSVFEERLRLIEG--APAAFATASGMAAVFTSLGALL--GAGDRLVAARSLFGSCFVVCSEIL-------  141 (414)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTC--CTTCEEEEESCCCHHHHHHHHTHH-------
T ss_pred             cCcCCCCChHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCccchHHHHHHHHH-------
Confidence            44567788999999999999985  3678999999999999998663  367899999999998543332110       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                        ...|+....+|.       +|    .++++++++    +++++|++|+++|++|.+.+    +++|+++|++||+++|
T Consensus       142 --~~~g~~~~~v~~-------~d----~~~l~~ai~----~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~li  200 (414)
T 3ndn_A          142 --PRWGVQTVFVDG-------DD----LSQWERALS----VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVV  200 (414)
T ss_dssp             --HHTTCEEEEECT-------TC----HHHHHHHTS----SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred             --HHcCcEEEEeCC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEE
Confidence              001333333322       13    577888775    36889999999999998865    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeecccccc-C-ccccccccCHHHHH-hhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-G-IPLGAVVTTPEIAE-VLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G-~pig~v~~~~~~~~-~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      +||+|+ .+...    ....++..+.+.+++|.+++ | +++|+++++++.+. .+...........+++.+++++..++
T Consensus       201 vDe~~~-~~~~~----~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~  275 (414)
T 3ndn_A          201 LDNVFA-TPLLQ----QGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE  275 (414)
T ss_dssp             EECTTT-HHHHC----CCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG
T ss_pred             EECCCc-ccccC----CchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            999997 22111    11234555556678999996 7 89999999988765 44421111122236776666665554


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEecCCCcCCCCHHHHHH
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKAETLY  431 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~~~~  431 (480)
                      .+  +...++..+..+++.+.|++    ++.+..                  .+|.|.++++++.....   ........
T Consensus       276 ~l--~~r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~---~~~~~~~~  346 (414)
T 3ndn_A          276 TL--AIRVQHSNASAQRIAEFLNG----HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED---VAKQRAFE  346 (414)
T ss_dssp             GH--HHHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG---GHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHHHHHhc----CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc---ccHHHHHH
Confidence            33  22334445555555555544    333322                  35678999999842100   00234566


Q ss_pred             HHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          432 IMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       432 ~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      +.+.|...++.+..|+                         ...+.|||+..+    |+++.+++.|+++|
T Consensus       347 ~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al  413 (414)
T 3ndn_A          347 VLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL  413 (414)
T ss_dssp             HHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred             HHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence            7777776666555443                         234689998554    56677777777766

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.90  E-value=1.4e-21  Score=204.21  Aligned_cols=350  Identities=11%  Similarity=0.035  Sum_probs=209.4

Q ss_pred             eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChH----HHHHHHHHHHhCCCCC-CEEEEeCCHHH
Q 011669           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA----IADFAEALASKMPGNL-KVVFFTNSGTE  169 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~----~~~l~e~L~~~~~~~~-~~v~f~~sGse  169 (480)
                      ...+.+|+|+..+      ++.+|.+++++...+... ........+.    ..+++++|+++++.+. +.++|++||||
T Consensus        97 ~~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~  169 (497)
T 2qma_A           97 FTQHPDCIAHLHT------PPLMPAVAAEAMIAALNQ-SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQ  169 (497)
T ss_dssp             CTTSTTBCSSSCC------CCBHHHHHHHHHHHHHCC-CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHH
T ss_pred             CCCCCCeeEeCCC------CCcHHHHHHHHHHHhhcc-cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchH
Confidence            3456788988765      456789988886654332 1111112233    3445677999986543 68999999999


Q ss_pred             HHHHHHHHHHhh------------cC-----Cc-eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCC
Q 011669          170 ANELAIMMARLY------------TG-----CN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV  231 (480)
Q Consensus       170 A~~~Alk~ar~~------------~~-----~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~  231 (480)
                      ||..|++.+|.+            .|     ++ .|++....+ .....+....+.+.       ..+..++...    .
T Consensus       170 a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h-~s~~~~~~~~g~g~-------~~v~~v~~~~----~  237 (497)
T 2qma_A          170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSH-FTVQKSASWMGLGE-------KAVMTVDANA----D  237 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSC-THHHHHHHHTTSCG-------GGEEEECBCT----T
T ss_pred             HHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCch-HHHHHHHHHcCCCc-------ccEEEEecCC----C
Confidence            999999998642            11     23 455554444 33333322222100       0123333321    1


Q ss_pred             CCCChHHHHHHHHHHHHccC-C-CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc
Q 011669          232 FGADGEMYAKDVQDLIDFGT-S-GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (480)
Q Consensus       232 ~~~d~~~~~~~le~~i~~~~-~-~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~  309 (480)
                      +..|    .++|++.++... . ..+.+|++...++++|.+.+    +++|.++|++||+++|+||+|.++.... . +.
T Consensus       238 ~~~d----~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~-~-~~  307 (497)
T 2qma_A          238 GTMD----ITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILS-S-HK  307 (497)
T ss_dssp             SSBC----GGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGS-T-TG
T ss_pred             CcCC----HHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhC-c-ch
Confidence            2123    456777765321 1 12457777777778888766    9999999999999999999999876655 3 33


Q ss_pred             ccccCC-Ccceeee--ccccccCccccccccCHH-HHHhhcCCC-cc---ccCCCcHHHH----------HHHHHHHHHh
Q 011669          310 FEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE-IAEVLTRRN-YF---NTFGGNPVCT----------AAGHAVLKVI  371 (480)
Q Consensus       310 ~~~~~~-~pDivt~--sK~~g~G~pig~v~~~~~-~~~~l~~~~-~~---~t~~~~~~~~----------aaa~a~L~~i  371 (480)
                      ....++ .+|++++  +|.+++++++|+++++++ .++.+.... +.   .+...++...          .+..++++.+
T Consensus       308 ~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~l  387 (497)
T 2qma_A          308 SRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNV  387 (497)
T ss_dssp             GGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHT
T ss_pred             HhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHh
Confidence            334455 6788876  799998889999998754 344443211 10   1101122211          1233455555


Q ss_pred             hhh---HHHHHHHHHHHHHHHHHHHhHHhcCceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC
Q 011669          372 QKD---KLQNNAHVVGSYLKERLTALKDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG  447 (480)
Q Consensus       372 ~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  447 (480)
                      ..+   ++.++..++.+++.+.|+++    +.+.. ....+.++++.+.....   ........+.+.|.++|+++.++.
T Consensus       388 g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~~~~---~~~~l~~~l~~~l~~~G~~~~~~~  460 (497)
T 2qma_A          388 GPKALGDMYDHLLAQTLEVADMIRTN----DQFELLAEPSLSTVLFRATHETA---DLDELNKALRLEALTRGIAVLGET  460 (497)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTC----TTEEECSCCSSSEEEEEECCSSS---CHHHHHHHHHHHHHHHTSCBCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEcCCCceEEEEEEcCCcc---CHHHHHHHHHHHHHhCCCEEEEee
Confidence            433   45566667777777777653    22211 12345577777643211   111223467788889999886532


Q ss_pred             cC--CCEEEEeC-CCCCCHHHHHHHHHHHHHHHhhC
Q 011669          448 FY--GNVFRITP-PLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       448 ~~--~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ..  .+++||++ +..+|++|+++++++|+++++++
T Consensus       461 ~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          461 IVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            22  35899997 78899999999999999988754

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.90  E-value=5.3e-23  Score=208.86  Aligned_cols=336  Identities=14%  Similarity=0.121  Sum_probs=200.3

Q ss_pred             EEEeccCCcccccCC--CCCHHHHHHHHHHH-Hhcccccccc-CChHHHHHHHHHHHhC----CC--CCC--EEEEeCCH
Q 011669          100 RYLDAFGGIATVCCG--HCHPYVVDSIVNQI-KRIQHSTVLY-LNHAIADFAEALASKM----PG--NLK--VVFFTNSG  167 (480)
Q Consensus       100 ~ylD~~~g~~~~~lG--h~~p~v~~A~~~~~-~~~~~~~~~~-~~~~~~~l~e~L~~~~----~~--~~~--~v~f~~sG  167 (480)
                      ..|||..|.....=|  ...+.|.+|+. .+ +..  ....| +.....+|++.+++++    ..  ..+  +++.|+||
T Consensus        30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~  106 (405)
T 3k7y_A           30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENY--KEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGG  106 (405)
T ss_dssp             SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHC--CCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHH
T ss_pred             CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCC--CCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCch
Confidence            357877775321112  24578888876 33 221  11122 2344455555555543    11  123  46899999


Q ss_pred             HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHH
Q 011669          168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI  247 (480)
Q Consensus       168 seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i  247 (480)
                      ++|+..++++.....+ +.|++.+|+|.++.......             |...+.+|......|+-|    .+++++.+
T Consensus       107 ~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l  168 (405)
T 3k7y_A          107 TGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESR-------------GFNLKYINFFDYNLIDIN----YDLFLNDL  168 (405)
T ss_dssp             HHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTT-------------TCEEEEECCEETTTTEEC----HHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHc-------------CCeEEEEeccccccCCcC----HHHHHHHH
Confidence            9999999987665446 99999999998876554433             333333332111123334    57788777


Q ss_pred             HccCCCceEEEEEcc-cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC--ccccc----ccCCCccee
Q 011669          248 DFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH--FWGFE----AHGVVPDIV  320 (480)
Q Consensus       248 ~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~--~~~~~----~~~~~pDiv  320 (480)
                      +..  .+.+++++.| .||++|.+ ++++.+++|.++|++||+++|+||+|.+|...+..  .....    ..+...-+.
T Consensus       169 ~~~--~~~~~i~l~~~~~NPTG~~-~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  245 (405)
T 3k7y_A          169 RNI--PNGSSVILQISCYNPCSVN-IEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQ  245 (405)
T ss_dssp             HHS--CSSCEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEE
T ss_pred             HhC--CCCeEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEe
Confidence            642  2456777776 47889877 58899999999999999999999999998654311  11111    111122234


Q ss_pred             eeccccc-cCcccccccc---CHHHHHhhcCC---CccccC-CCcHHHHHHHHHHHHHhh-hhHHHHH-------HHHHH
Q 011669          321 TMAKGIG-NGIPLGAVVT---TPEIAEVLTRR---NYFNTF-GGNPVCTAAGHAVLKVIQ-KDKLQNN-------AHVVG  384 (480)
Q Consensus       321 t~sK~~g-~G~pig~v~~---~~~~~~~l~~~---~~~~t~-~~~~~~~aaa~a~L~~i~-~~~~~~~-------~~~~~  384 (480)
                      +|||.++ .|+|+||+++   ++++++.+...   ....++ +.+.+++.++.++|+.-. .+.+.++       +++.+
T Consensus       246 S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R  325 (405)
T 3k7y_A          246 SFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNR  325 (405)
T ss_dssp             ECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999 8999999753   56666544321   111233 445677777777775310 1223333       33344


Q ss_pred             HHHHHHHHHhHHhcCc---eeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCC
Q 011669          385 SYLKERLTALKDKYGI---IGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLC  460 (480)
Q Consensus       385 ~~l~~~L~~l~~~~~~---~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~  460 (480)
                      +.+.+.|++-.++++.   +... ...|+++|+.+..             .+++.|.++||++.|++      ||+.. .
T Consensus       326 ~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-------------~~~~~L~~~gV~v~p~~------Ris~a-~  385 (405)
T 3k7y_A          326 ILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-------------KIAEHLKTHHIYIINNG------RINVS-G  385 (405)
T ss_dssp             HHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-------------GGTTTTTTTTEECCTTS------EEEGG-G
T ss_pred             HHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-------------HHHHHHHHCCEeecCCC------eEEEe-c
Confidence            4444444300003332   2222 3345666654311             23345578899999864      88843 3


Q ss_pred             CCHHHHHHHHHHHHHHHhh
Q 011669          461 FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       461 ~t~~~id~~l~~l~~~l~~  479 (480)
                      .++++|++++++|++++++
T Consensus       386 ~~~~~i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          386 ITKNNVDYIADKICLSLSQ  404 (405)
T ss_dssp             CCTTHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHHhh
Confidence            5789999999999999876

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.89  E-value=9.4e-22  Score=201.14  Aligned_cols=317  Identities=14%  Similarity=0.085  Sum_probs=200.2

Q ss_pred             eccCCcccccCCCCCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHh
Q 011669          103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL  180 (480)
Q Consensus       103 D~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~  180 (480)
                      ||..|.+.  ++ .+|++.+++.+.+....     |.  .+...+++++|+++++.  +++++++||++|++.+++.+. 
T Consensus        20 ~l~~~~p~--~~-~p~~~~~a~~~~~~~~~-----y~~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~l~~l~-   88 (424)
T 2po3_A           20 PLLVGRPN--RI-DRARLYERLDRALDSQW-----LSNGGPLVREFEERVAGLAGV--RHAVATCNATAGLQLLAHAAG-   88 (424)
T ss_dssp             CEETTCCC--CC-CHHHHHHHHHHHHHHTC-----CSSSCHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHHT-
T ss_pred             cccccCCC--CC-ChHHHHHHHHHHHhcCC-----cccCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-
Confidence            45555544  33 36799999988886532     33  47889999999999954  689999999999999999764 


Q ss_pred             hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEE
Q 011669          181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS  260 (480)
Q Consensus       181 ~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~  260 (480)
                        .+++|++.+++|++........             |...+.++... ..|..|    .+++++.++    +++++|++
T Consensus        89 --~gd~Vlv~~~~~~~~~~~~~~~-------------G~~~~~v~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~  144 (424)
T 2po3_A           89 --LTGEVIMPSMTFAATPHALRWI-------------GLTPVFADIDP-DTGNLD----PDQVAAAVT----PRTSAVVG  144 (424)
T ss_dssp             --CCSEEEEESSSCTHHHHHHHHT-------------TCEEEEECBCT-TTSSBC----HHHHGGGCC----TTEEEEEE
T ss_pred             --CCCEEEECCCccHHHHHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHhhC----cCCcEEEE
Confidence              3589999999999876543221             22222222110 112223    566666654    36777776


Q ss_pred             cccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceee--ec--cccccCcccccc
Q 011669          261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVT--MA--KGIGNGIPLGAV  335 (480)
Q Consensus       261 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt--~s--K~~g~G~pig~v  335 (480)
                      .+   ++|...    .+++|.++|++||+++|+||+|+ |+.+.| ..     .+..+|+++  |+  |++++ +++||+
T Consensus       145 ~~---~tG~~~----~l~~i~~la~~~~~~li~Dea~~~g~~~~~-~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~  210 (424)
T 2po3_A          145 VH---LWGRPC----AADQLRKVADEHGLRLYFDAAHALGCAVDG-RP-----AGSLGDAEVFSFHATKAVNA-FEGGAV  210 (424)
T ss_dssp             EC---GGGCCC----CHHHHHHHHHHTTCEEEEECTTCTTCEETT-EE-----TTSSSSEEEEECCTTSSSCC-SSCEEE
T ss_pred             EC---CCCCcC----CHHHHHHHHHHcCCEEEEECccccCCeECC-ee-----cccccCEEEEeCCCCCCccC-CCCeEE
Confidence            43   456543    49999999999999999999998 676555 21     122246664  44  77766 799999


Q ss_pred             ccC-HHHHHhhcCCCc------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669          336 VTT-PEIAEVLTRRNY------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (480)
Q Consensus       336 ~~~-~~~~~~l~~~~~------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  402 (480)
                      +++ +++++.+.....            +.++..+++.+++++..++.+  +.+.++.+++.+++++.|.++    +.+.
T Consensus       211 v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~  284 (424)
T 2po3_A          211 VTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLADL----PGVL  284 (424)
T ss_dssp             EESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCSC----TTEE
T ss_pred             EeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCcc
Confidence            999 788776543111            112233566666666555433  234555555555555555432    2222


Q ss_pred             eEe-ccc-----eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-C----------------------CCEE
Q 011669          403 DVR-GRG-----FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-Y----------------------GNVF  453 (480)
Q Consensus       403 ~v~-g~g-----~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~----------------------~~~i  453 (480)
                      ... ..|     .++.+.+.... .    ......+.+.|.++||.+.+... .                      ...+
T Consensus       285 ~~~~~~~~~~~~~~~~i~~~~~~-~----~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l  359 (424)
T 2po3_A          285 VADHDRHGLNNHQYVIVEIDEAT-T----GIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVL  359 (424)
T ss_dssp             ECCGGGGSCCCCCCEEEEECHHH-H----SSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEE
T ss_pred             ccCCCCCCccccEEEEEEECCcc-c----hhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEE
Confidence            221 111     34445552100 0    00145678888999999976211 0                      0127


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          454 RITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |+.+...+|++|+++++++|++++++
T Consensus       360 ~l~~~~~~t~e~i~~~~~~L~~~~~~  385 (424)
T 2po3_A          360 SLPTGTAIGDDDIRRVADLLRLCATR  385 (424)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            77766889999999999999988753

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.89  E-value=5.5e-23  Score=206.94  Aligned_cols=327  Identities=13%  Similarity=0.057  Sum_probs=199.1

Q ss_pred             CC-EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHH
Q 011669           98 GR-RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAI  175 (480)
Q Consensus        98 G~-~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Al  175 (480)
                      |. .++|+..+.+..   ..+|+|.+++.    ..  .   .+.....++++.+++.++. +.+++++++||++|++.++
T Consensus        26 g~~~v~~~~~~~~~~---~~~~~v~~a~~----~~--~---~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~   93 (374)
T 2aeu_A           26 GRDALYDLSGLSGGF---LIDEKDKALLN----TY--I---GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATI   93 (374)
T ss_dssp             CGGGCEECSSCCCCC---CCCHHHHHHHT----ST--T---HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred             CccceeeecccCCCC---CCCHHHHHHHH----Hh--c---CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHH
Confidence            44 466877654433   35688888875    11  1   1123345677777777754 2368899999999999999


Q ss_pred             HHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce
Q 011669          176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV  255 (480)
Q Consensus       176 k~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~  255 (480)
                      +.+    ++++|++.+++||+.........          ..|+..+.+.         |    .+++++. +    +++
T Consensus        94 ~~~----~gd~Vl~~~~~y~~~~~~~~~~~----------~~g~~~~~v~---------d----~~~l~~~-~----~~~  141 (374)
T 2aeu_A           94 LAL----KPKKVIHYLPELPGHPSIERSCK----------IVNAKYFESD---------K----VGEILNK-I----DKD  141 (374)
T ss_dssp             HHH----CCSEEEEECSSSSCCTHHHHHHH----------HTTCEEEEES---------C----HHHHHTT-C----CTT
T ss_pred             HhC----CCCEEEEecCCCCccHHHHHHHH----------HcCcEEEEeC---------C----HHHHHhc-C----CCc
Confidence            965    67899999999998443111110          0133222221         2    4566655 2    367


Q ss_pred             EE-EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccCccc
Q 011669          256 AG-FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPL  332 (480)
Q Consensus       256 a~-vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pi  332 (480)
                      ++ |++++++|++|.   +...+++|.++|++||+++|+||+|..+. .+ ........+..+|++  +++|.++ |+++
T Consensus       142 ~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~-~~~~~~~~~~~~di~~~S~sK~l~-g~~~  215 (374)
T 2aeu_A          142 TLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARV-RL-LFNQPPALKLGADLVVTSTDKLME-GPRG  215 (374)
T ss_dssp             EEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HH-HTTCCCHHHHTCSEEEEETTSSSS-SCSC
T ss_pred             cEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCccccc-cc-ccccCCccccCCcEEEecCccccc-Ccce
Confidence            88 999988998883   33449999999999999999999986442 11 000000111235666  5899986 4799


Q ss_pred             cccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----HHHHHHhHHhc----CceeeE
Q 011669          333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL----KERLTALKDKY----GIIGDV  404 (480)
Q Consensus       333 g~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l----~~~L~~l~~~~----~~~~~v  404 (480)
                      ||+++++++++.+.........+.+++.++++.++|+.+..+ ..++..+....+    ++.|.+.....    ++....
T Consensus       216 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~  294 (374)
T 2aeu_A          216 GLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER  294 (374)
T ss_dssp             EEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEE
T ss_pred             EEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceee
Confidence            999999999887765332223356889999999999876332 233333334344    44554432221    112234


Q ss_pred             eccceeEEEEEecCCCcCCCCHHHHHHHH-HHHHHcCceeeccCcC---CCEEEEeCCC-CCCHHHHHHHHHHHHHHHhh
Q 011669          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIM-DKMKEMGVLVGKGGFY---GNVFRITPPL-CFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~~~~---~~~iRi~p~~-~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+.|.+++..-...  .  ........++ +.+.++||++.++..+   .+++||+++. ..++.+++++++.|++++++
T Consensus       295 ~~~g~~~~~~~~~~--~--~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~  370 (374)
T 2aeu_A          295 TPTGFVIKRVYKDD--T--INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM  370 (374)
T ss_dssp             CSSEEEEEEEESSH--H--HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeecccc--c--ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence            56666654421110  0  0000112244 4556789999987432   3589999753 23344588999999888865

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.89  E-value=1e-22  Score=204.49  Aligned_cols=316  Identities=14%  Similarity=0.091  Sum_probs=197.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEE
Q 011669          111 VCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL  190 (480)
Q Consensus       111 ~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~  190 (480)
                      .++||++|.+.+.+.+++.+.......+..+...+++++|+++++.  ++++|++||++|++.+++.+. ..+++.|++.
T Consensus         6 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~i~~~sgt~al~~~l~~l~-~~~gd~Vi~~   82 (373)
T 3frk_A            6 ASFKPMHDEIEYEIKFKFEEIYKRNWFILGDEDKKFEQEFADYCNV--NYCIGCGNGLDALHLILKGYD-IGFGDEVIVP   82 (373)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEE
T ss_pred             cCCCcccCCCCHHHHHHHHHHHHCCCccCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-CCCcCEEEEC
Confidence            4556666655554444443321111234578889999999999964  589999999999999998762 2367899999


Q ss_pred             cCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcce
Q 011669          191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (480)
Q Consensus       191 ~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  270 (480)
                      .++|++........ +            ...+.++... ..+..|    .+++++.++    +++++|++   ++++|..
T Consensus        83 ~~~~~~~~~~~~~~-g------------~~~~~~~~~~-~~~~~d----~~~l~~~l~----~~~~~v~~---~n~~G~~  137 (373)
T 3frk_A           83 SNTFIATALAVSYT-G------------AKPIFVEPDI-RTYNID----PSLIESAIT----EKTKAIIA---VHLYGQP  137 (373)
T ss_dssp             TTSCTHHHHHHHHH-S------------CEEEEECEET-TTTEEC----GGGTGGGCC----TTEEEEEE---ECCTTCC
T ss_pred             CCCcHHHHHHHHHc-C------------CEEEEEeccc-cccCcC----HHHHHHhcC----CCCeEEEE---ECCCcCc
Confidence            99999865543322 2            1111111100 011112    355666553    36777773   3456765


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec----ccccc-CccccccccC-HHHHHh
Q 011669          271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVTT-PEIAEV  344 (480)
Q Consensus       271 ~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s----K~~g~-G~pig~v~~~-~~~~~~  344 (480)
                      .+    +++|.++|++||+++|+||+|+. |    ..+.....+..+|++++|    |++++ |. .|+++++ +++.+.
T Consensus       138 ~~----l~~i~~l~~~~~~~li~D~a~~~-g----~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~  207 (373)
T 3frk_A          138 AD----MDEIKRIAKKYNLKLIEDAAQAH-G----SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEK  207 (373)
T ss_dssp             CC----HHHHHHHHHHHTCEEEEECTTCT-T----CEETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHH
T ss_pred             cc----HHHHHHHHHHcCCEEEEECCccc-C----CEECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHH
Confidence            54    99999999999999999999973 2    112223445557888777    99987 64 6777776 456554


Q ss_pred             hcCCC------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe-ccceeE
Q 011669          345 LTRRN------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-GRGFLL  411 (480)
Q Consensus       345 l~~~~------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g~~~  411 (480)
                      +....            .+.++..+++.++++++.++.+  +++.++.+++.+++++.|.++.  ........ ....+.
T Consensus       208 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~  283 (373)
T 3frk_A          208 IKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWY  283 (373)
T ss_dssp             HHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCS
T ss_pred             HHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeE
Confidence            43211            1234556788777776666533  4466667777777777665542  11111000 111111


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-------------------------CCCEEEEeCCCCCCHHHH
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-------------------------YGNVFRITPPLCFTKEDA  466 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t~~~i  466 (480)
                      .+.+...         ....+.+.|.++||.++++..                         ....+|++....+|++||
T Consensus       284 ~~~~~~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di  354 (373)
T 3frk_A          284 TFVIRSE---------KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEI  354 (373)
T ss_dssp             SEEEEES---------SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred             EEEEEeC---------CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHH
Confidence            1222111         146788999999999985421                         015799999999999999


Q ss_pred             HHHHHHHHHHH
Q 011669          467 DYLVDVMDYSL  477 (480)
Q Consensus       467 d~~l~~l~~~l  477 (480)
                      ++++++|++..
T Consensus       355 ~~~~~~l~~~~  365 (373)
T 3frk_A          355 EYVIDKINAWK  365 (373)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.89  E-value=7.7e-23  Score=206.76  Aligned_cols=308  Identities=18%  Similarity=0.177  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccc
Q 011669          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (480)
Q Consensus       118 p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~  197 (480)
                      +++.+++.+.+....+.   +..+...+++++|+++++.  +.++|++||++|++.+++.+. ..+++.|++..++|++.
T Consensus        36 ~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~--~~~i~~~~gt~al~~~l~~~~-~~~gd~vl~~~~~~~~~  109 (391)
T 3dr4_A           36 GNERDYVLECMDTTWIS---SVGRFIVEFEKAFADYCGV--KHAIACNNGTTALHLALVAMG-IGPGDEVIVPSLTYIAS  109 (391)
T ss_dssp             SSHHHHHHHHHHHTCCS---SCSHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHT-CCTTCEEEEESSSCTHH
T ss_pred             HHHHHHHHHHHHcCCcc---CCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCchHHH
Confidence            67888888877654221   2468889999999999964  478999999999999999773 23678999999999987


Q ss_pred             cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChH
Q 011669          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  277 (480)
                      .......             |...+.++... ..|..|    .+++++.++    +++++|+++   +++|.+.+    +
T Consensus       110 ~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~~~----~~~~~v~~~---n~tG~~~~----~  160 (391)
T 3dr4_A          110 ANSVTYC-------------GATPVLVDNDP-RTFNLD----AAKLEALIT----PRTKAIMPV---HLYGQICD----M  160 (391)
T ss_dssp             HHHHHHT-------------TCEEEEECBCT-TTCSBC----GGGSGGGCC----TTEEEECCB---CGGGCCCC----H
T ss_pred             HHHHHHC-------------CCEEEEEecCc-cccCcC----HHHHHHhcC----CCceEEEEE---CCCCChhh----H
Confidence            6554432             22222222110 112223    345655553    367777743   35676554    9


Q ss_pred             HHHHHHHHHhCCEEEEcccccC-ccccCCCcccccccCCCcceeeec----cccccCccccccccC-HHHHHhhcCCC--
Q 011669          278 PAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRRN--  349 (480)
Q Consensus       278 ~~l~~l~~~~gillI~DEv~tg-fgr~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~~--  349 (480)
                      ++|.++|++||+++|+||+|+. ....+      ...+..+|++++|    |++++| +.|+++.+ +++.+.+....  
T Consensus       161 ~~i~~l~~~~~~~li~D~a~~~g~~~~~------~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~  233 (391)
T 3dr4_A          161 DPILEVARRHNLLVIEDAAEAVGATYRG------KKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQ  233 (391)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCTTCEETT------EETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBT
T ss_pred             HHHHHHHHHcCCEEEEECcccccceECC------eeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhc
Confidence            9999999999999999999972 21112      1233345777766    999774 57887766 45655543211  


Q ss_pred             ------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee-----EeccceeEE
Q 011669          350 ------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD-----VRGRGFLLG  412 (480)
Q Consensus       350 ------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-----v~g~g~~~~  412 (480)
                                  .+..+..+++.+++++..++.+  +++.++.+++.+++++.|.++  .+.....     ....+.+++
T Consensus       234 g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~  309 (391)
T 3dr4_A          234 GMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMYT  309 (391)
T ss_dssp             TCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSEE
T ss_pred             CCCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEEE
Confidence                        1123556677777766665533  456777888888888888776  3322221     122233456


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc----------------------CCCEEEEeCCCCCCHHHHHHHH
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF----------------------YGNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~~iRi~p~~~~t~~~id~~l  470 (480)
                      +.+....      ......+.+.|.++||.+.++..                      ..+.+||.+...+|++||++++
T Consensus       310 i~~~~~~------~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~  383 (391)
T 3dr4_A          310 VRLGEGL------STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVI  383 (391)
T ss_dssp             EEECSSC------SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred             EEECCcc------chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHH
Confidence            6653210      11246788999999999987530                      1357999999999999999999


Q ss_pred             HHHHHHH
Q 011669          471 DVMDYSL  477 (480)
Q Consensus       471 ~~l~~~l  477 (480)
                      ++|++++
T Consensus       384 ~~l~~~l  390 (391)
T 3dr4_A          384 AALDQVL  390 (391)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHh
Confidence            9998764

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.89  E-value=8.6e-22  Score=200.43  Aligned_cols=331  Identities=13%  Similarity=0.096  Sum_probs=196.4

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhcc---ccc-cccC-ChHH----HHHHHHHHHhCCCCCCEEEEeCCHHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HST-VLYL-NHAI----ADFAEALASKMPGNLKVVFFTNSGTEAN  171 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~-~~~~-~~~~----~~l~e~L~~~~~~~~~~v~f~~sGseA~  171 (480)
                      .+++.++..     +.||+|.+|+.+++.+..   +.. ..+. ....    ..+++++++.++.+.++| +++||++|+
T Consensus        27 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~~sGt~a~  100 (417)
T 3n0l_A           27 GLEMIASEN-----FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANV-QPNSGSQAN  100 (417)
T ss_dssp             SEECCTTCC-----CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHH
T ss_pred             CeeeecccC-----CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcce-EeccHHHHH
Confidence            455554432     458999999998884321   111 1111 2222    345557888887654545 557779999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCccccccccc--ccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTM--GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~--~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      +.+++.+.  .+++.|++.+++|++......  ...+          .++..++++..  ..+..|    .++|++.++.
T Consensus       101 ~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~--~~~~~d----~~~l~~~i~~  162 (417)
T 3n0l_A          101 QGVYAALI--NPGDKILGMDLSHGGHLTHGAKVSSSG----------KMYESCFYGVE--LDGRID----YEKVREIAKK  162 (417)
T ss_dssp             HHHHHHHS--CTTCEEEEECC--------------------------CCSEEEEECCC--TTSSCC----HHHHHHHHHH
T ss_pred             HHHHHHhc--CCCCEEEecccccccccchhhhhhhhc----------ceeeeEeccCC--CCCCcC----HHHHHHHHHh
Confidence            99999774  367899999999987433111  1111          12222222221  122234    6788888863


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec--ccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGI  326 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s--K~~  326 (480)
                      .   ++++|++.+.+  +|.+.+    +++|+++|++||+++|+||+|. |+...|.......    ..|++++|  |++
T Consensus       163 ~---~~~~v~~~~~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~----~~di~~~s~sK~l  229 (417)
T 3n0l_A          163 E---KPKLIVCGASA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP----YAHVVSSTTHKTL  229 (417)
T ss_dssp             H---CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT----TCSEEEEESSTTT
T ss_pred             c---CCeEEEECCcc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc----cceEEEeeCcccc
Confidence            2   46677765533  366554    9999999999999999999974 3322331110111    24777655  999


Q ss_pred             ccCccccccccC-HHHHHhhcCCCc-cccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669          327 GNGIPLGAVVTT-PEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGII  401 (480)
Q Consensus       327 g~G~pig~v~~~-~~~~~~l~~~~~-~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~  401 (480)
                       +|++.||++++ +++++.+..... +.+.+.++..+++..+++....+   +++.+++.++.+++.+.|.+.  .+..+
T Consensus       230 -~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~  306 (417)
T 3n0l_A          230 -RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR--KFKLV  306 (417)
T ss_dssp             -CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEG
T ss_pred             -CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--Cceec
Confidence             66788999998 788877765332 23334456666666666665332   345566666667777777662  12111


Q ss_pred             eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--------CCCEEEEeCCCC----CCHHHHHHH
Q 011669          402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--------YGNVFRITPPLC----FTKEDADYL  469 (480)
Q Consensus       402 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~~~~iRi~p~~~----~t~~~id~~  469 (480)
                      . ....+.++++.+....       .....+.+.|.++||.+.+...        ..+.+|++++..    +++++|+++
T Consensus       307 ~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~  378 (417)
T 3n0l_A          307 S-DGTDNHLVLMSFLDRE-------FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIV  378 (417)
T ss_dssp             G-GSCSSSEEEEECTTSS-------SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred             c-CCCCceEEEEEcccCC-------CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHH
Confidence            1 1123456677663221       1145677788899999975421        135699987643    578999999


Q ss_pred             HHHHHHHHhh
Q 011669          470 VDVMDYSLSK  479 (480)
Q Consensus       470 l~~l~~~l~~  479 (480)
                      +++|++++++
T Consensus       379 ~~~l~~~l~~  388 (417)
T 3n0l_A          379 SNYIADILDD  388 (417)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998864

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.89  E-value=1.9e-21  Score=196.31  Aligned_cols=312  Identities=12%  Similarity=0.079  Sum_probs=201.8

Q ss_pred             CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccc
Q 011669          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG  196 (480)
Q Consensus       117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG  196 (480)
                      .|++.+++.+++....  ...+..+...+++++|+++++..  ..++++||++|++.+++.+. ..++++|++..++||+
T Consensus        16 ~~~~~~a~~~~l~~~~--~~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~al~~~l~~l~-~~~gd~Vi~~~~~~~~   90 (388)
T 1b9h_A           16 DDAERNGLVRALEQGQ--WWRMGGDEVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMG-VGPGTEVIVPAFTFIS   90 (388)
T ss_dssp             CHHHHHHHHHHHHTSC--CBTTTCSHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTH
T ss_pred             CHHHHHHHHHHHHcCC--eeecCCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCccHH
Confidence            3899999999987632  12344678899999999999653  45667778999999999763 2356789999999998


Q ss_pred             ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCCh
Q 011669          197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY  276 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  276 (480)
                      ........             |+..+.++... ..|..|    .++|++.++    +++++|+  |+ +++|.+.+    
T Consensus        91 ~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~i~----~~~~~v~--~~-n~tG~~~~----  141 (388)
T 1b9h_A           91 SSQAAQRL-------------GAVTVPVDVDA-ATYNLD----PEAVAAAVT----PRTKVIM--PV-HMAGLMAD----  141 (388)
T ss_dssp             HHHHHHHT-------------TCEEEEECBCT-TTCCBC----HHHHHHHCC----TTEEEEC--CB-CGGGCCCC----
T ss_pred             HHHHHHHc-------------CCEEEEEecCC-CcCCCC----HHHHHHhcC----cCceEEE--Ee-CCccCcCC----
Confidence            76543222             22222222111 112223    677887774    3677777  54 45676654    


Q ss_pred             HHHHHHHHHHhCCEEEEcccccC-ccccCCCcccccccCCCcceeeec--cccccCccccccccCHH-H--HHhhcCC-C
Q 011669          277 LPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPE-I--AEVLTRR-N  349 (480)
Q Consensus       277 l~~l~~l~~~~gillI~DEv~tg-fgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~-~--~~~l~~~-~  349 (480)
                      +++|.++|++||+++|+||+|+. +...| ..  +..++ ..++.+||  |++++ .++|+++++++ +  ++.+... .
T Consensus       142 l~~i~~la~~~~~~li~D~a~~~g~~~~~-~~--~~~~~-~i~~~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~  216 (388)
T 1b9h_A          142 MDALAKISADTGVPLLQDAAHAHGARWQG-KR--VGELD-SIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHS  216 (388)
T ss_dssp             HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE--GGGSS-SCEEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTB
T ss_pred             HHHHHHHHHHcCCEEEEecchhcCCccCC-ee--ccccc-ceEEEEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHh
Confidence            99999999999999999999973 33333 11  22222 24455666  66655 48899998875 6  5544211 0


Q ss_pred             c--------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-------eccc
Q 011669          350 Y--------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-------RGRG  408 (480)
Q Consensus       350 ~--------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-------~g~g  408 (480)
                      +              +.++..+++.++++.+.++.++  +..++.+++.+++.+.|+++    +.+...       +..+
T Consensus       217 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~  290 (388)
T 1b9h_A          217 CGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAI----DGVVPQGGDVRADRNSH  290 (388)
T ss_dssp             TTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTS----TTCEECCCCTTCCBCCC
T ss_pred             CCCCccCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----CCccccCCCcCCCccce
Confidence            0              1223356676666666555432  34556666677777766653    222211       2336


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-------------------------------CCEEEEeC
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-------------------------------GNVFRITP  457 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------------------~~~iRi~p  457 (480)
                      .++++.+...      .......+.+.|.++||.+.++...                               .+.|||+.
T Consensus       291 ~~~~~~~~~~------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~  364 (388)
T 1b9h_A          291 YMAMFRIPGL------TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHH  364 (388)
T ss_dssp             SEEEEECTTC------CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEG
T ss_pred             EEEEEEeCCc------CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecC
Confidence            7778876321      1123567888999999999764210                               13589988


Q ss_pred             CCCC-CHHHHHHHHHHHHHHHhh
Q 011669          458 PLCF-TKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       458 ~~~~-t~~~id~~l~~l~~~l~~  479 (480)
                      ...+ |++||++++++|++++++
T Consensus       365 ~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          365 RVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhh
Confidence            7788 999999999999998865

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.89  E-value=8.8e-22  Score=196.16  Aligned_cols=308  Identities=12%  Similarity=0.000  Sum_probs=200.9

Q ss_pred             CCHHHHHHHHHHHHhccccc-cccC--ChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEc
Q 011669          116 CHPYVVDSIVNQIKRIQHST-VLYL--NHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~-~~~~--~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~  191 (480)
                      .+|+|.+++.+.+.+..... ..+.  .+...+++++++++++. +.++|++++||++|++.+++....   . ++++..
T Consensus        15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~---~-~~i~~~   90 (362)
T 3ffr_A           15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVE---K-KSFHCV   90 (362)
T ss_dssp             CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCS---S-EEEEEE
T ss_pred             CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccC---C-cEEEEc
Confidence            46899999988877532111 1111  24567889999999865 346899999999999999986542   3 666666


Q ss_pred             CCccccccc-ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcce
Q 011669          192 NAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (480)
Q Consensus       192 ~~yhG~~~~-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  270 (480)
                      ..+++.... .....+.          .+..++.+.    .+..|    .++++  +    .+++++|+++++++++|.+
T Consensus        91 ~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~--~----~~~~~~v~~~~~~nptG~~  146 (362)
T 3ffr_A           91 NGSFSKRFYEFAGELGR----------EAYKEEAAF----GKGFY----PADIT--V----PADAEIICLTHNETSSGVS  146 (362)
T ss_dssp             CSHHHHHHHHHHHHTTC----------EEEEEECCT----TCCCC----GGGCC--C----CTTCCEEEEESEETTTTEE
T ss_pred             CcHHHHHHHHHHHHhCC----------CeEEEecCC----CCCCC----HHHHh--c----cCCccEEEEEcCCCCccee
Confidence            666662211 1111110          122222211    11123    34444  2    3478888888889999988


Q ss_pred             eCCCChHHHHHHHHHHh-CCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHHhhcC
Q 011669          271 ELAPGYLPAVYKSIKKA-GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTR  347 (480)
Q Consensus       271 ~~~~~~l~~l~~l~~~~-gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~~l~~  347 (480)
                      .+    +++|.++|++| |+++|+||+|+.+...      .+...  .|+++  ++|.++++..+|++++++++++.+..
T Consensus       147 ~~----l~~i~~la~~~p~~~li~D~a~~~~~~~------~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~  214 (362)
T 3ffr_A          147 MP----VEDINTFRDKNKDALIFVDAVSSLPYPK------FDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKA  214 (362)
T ss_dssp             CC----HHHHTTSGGGSTTSEEEEECTTTTTSSC------CCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHH
T ss_pred             CC----HHHHHHHHHhCCCCEEEEecccccCCcc------cChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhh
Confidence            76    99999999999 9999999998732211      11111  56664  56999954456888999988776643


Q ss_pred             CCc--------------------c-ccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceee
Q 011669          348 RNY--------------------F-NTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (480)
Q Consensus       348 ~~~--------------------~-~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  403 (480)
                      ...                    + ..++.+..++++..++++.+.++   +..++.+++.+++.+.|+++    +.+..
T Consensus       215 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~  290 (362)
T 3ffr_A          215 LLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----KVFSF  290 (362)
T ss_dssp             HHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----SSEEE
T ss_pred             ccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----cCcee
Confidence            211                    1 13456677777777888866543   45555666666666666543    32222


Q ss_pred             Ee-----ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          404 VR-----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       404 v~-----g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ..     ..+.++++.+..          ....+.+.|.++||.+.++..  .++++||++....+++++++++++|+++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~  360 (362)
T 3ffr_A          291 GVEDAKLRSMTTIVANTTM----------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEK  360 (362)
T ss_dssp             SSSCGGGBCSSEEEEEESS----------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCChhhcCCceEEEecCC----------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            11     124566666632          256788899999999987532  3578999999889999999999999986


Q ss_pred             H
Q 011669          477 L  477 (480)
Q Consensus       477 l  477 (480)
                      +
T Consensus       361 ~  361 (362)
T 3ffr_A          361 I  361 (362)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.89  E-value=3.2e-22  Score=197.50  Aligned_cols=282  Identities=14%  Similarity=-0.009  Sum_probs=188.5

Q ss_pred             HHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecC
Q 011669          145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN  224 (480)
Q Consensus       145 ~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~  224 (480)
                      +++++|++.++.+  ..++++||++|++.+++.+.  .++++|++.++.||+...........         .|+....+
T Consensus         2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~--~~g~~v~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~   68 (331)
T 1pff_A            2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL--KAGDHLISDDCLYGCTHALFEHQLRK---------FGVEVDFI   68 (331)
T ss_dssp             HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHHH---------TTCEEEEE
T ss_pred             hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc--CCCCEEEEcCCCcchHHHHHHHHHHh---------cCCEEEEe
Confidence            5788888888654  56788888999999999663  35688999999999865443221100         12222222


Q ss_pred             CCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH-hCCEEEEcccccCcccc
Q 011669          225 PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AGGLCIADEVQAGFART  303 (480)
Q Consensus       225 p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~gillI~DEv~tgfgr~  303 (480)
                      +.       .|    .+++++.++    +++++|++++++|++|.+.+    +++|.++|++ ||+++|+||+|+.+ ..
T Consensus        69 ~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~-~~  128 (331)
T 1pff_A           69 DM-------AV----PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-IL  128 (331)
T ss_dssp             CT-------TS----TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-HH
T ss_pred             CC-------CC----HHHHHHhhc----CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccc-cc
Confidence            21       12    356766664    36899999999999998875    9999999999 99999999999732 21


Q ss_pred             CCCcccccccCCCcceeeecccccc-Ccc-ccccccCH-HHHHhhcCCCcc-ccCCCcHHHHHHHHHHHHHhhhhHHHHH
Q 011669          304 GSHFWGFEAHGVVPDIVTMAKGIGN-GIP-LGAVVTTP-EIAEVLTRRNYF-NTFGGNPVCTAAGHAVLKVIQKDKLQNN  379 (480)
Q Consensus       304 G~~~~~~~~~~~~pDivt~sK~~g~-G~p-ig~v~~~~-~~~~~l~~~~~~-~t~~~~~~~~aaa~a~L~~i~~~~~~~~  379 (480)
                      . ..  . .++....+.+++|.+++ |.| +|++++++ ++++.+...... .+.+.+++++.++.++++.+..  ..++
T Consensus       129 ~-~~--~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~  202 (331)
T 1pff_A          129 T-NP--L-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKR  202 (331)
T ss_dssp             C-CG--G-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHH
T ss_pred             C-Ch--h-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHH--HHHH
Confidence            1 11  1 23444444578999995 788 78999998 898888776655 5667888888887777765422  1222


Q ss_pred             HHHHHHHHHHHHHHhH---H-------hcCcee----eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec
Q 011669          380 AHVVGSYLKERLTALK---D-------KYGIIG----DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK  445 (480)
Q Consensus       380 ~~~~~~~l~~~L~~l~---~-------~~~~~~----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~  445 (480)
                      ..+..+.+.+.+++..   +       +++.+.    ..++.|.++.+.+. +          ...+.+.|.++||++..
T Consensus       203 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~l~~~gI~~~~  271 (331)
T 1pff_A          203 AAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G----------LEKAKKVLDNCHVVSLA  271 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S----------HHHHHHHHHTCSSSEEC
T ss_pred             HHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C----------HHHHHHHHHhCCCceec
Confidence            3333333333333321   0       011000    12346778888763 1          34577788889997743


Q ss_pred             cC----------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          446 GG----------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       446 ~~----------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ..                            ...+.+||+++...++++++.++++|+++
T Consensus       272 ~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          272 VSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             SSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             cCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence            31                            11479999999999999999999998764

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.88  E-value=3.7e-21  Score=194.85  Aligned_cols=319  Identities=13%  Similarity=0.076  Sum_probs=202.9

Q ss_pred             CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccc
Q 011669          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG  196 (480)
Q Consensus       117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG  196 (480)
                      +|++.+++.+.+... +...  ..+...+++++|+++++.  +++++++||++|++.+++.+. ..++++|++..++|++
T Consensus        11 ~~~v~~a~~~~~~~~-~~~~--~g~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~-~~~gd~Vl~~~~~~~~   84 (394)
T 1o69_A           11 GGNELKYIEEVFKSN-YIAP--LGEFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIA   84 (394)
T ss_dssp             -CCHHHHHHHHHHHT-TTSC--TTHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGG
T ss_pred             CHHHHHHHHHHHHcC-CccC--CChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHH
Confidence            367888888887653 1110  125688999999999854  789999999999999999763 2356889999999998


Q ss_pred             ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCCh
Q 011669          197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY  276 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  276 (480)
                      ........             |...+.++..  ..|..|    .+++++.++.. ++++++|++++   ++|..    ..
T Consensus        85 ~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~i~~~-~~~~~~v~~~~---~~G~~----~~  137 (394)
T 1o69_A           85 SVAPICYL-------------KAKPVFIDCD--ETYNID----VDLLKLAIKEC-EKKPKALILTH---LYGNA----AK  137 (394)
T ss_dssp             GTHHHHHT-------------TCEEEEECBC--TTSSBC----HHHHHHHHHHC-SSCCCEEEEEC---GGGCC----CC
T ss_pred             HHHHHHHc-------------CCEEEEEEeC--CCCCcC----HHHHHHHHhcc-cCCceEEEEEC---CCCCh----hh
Confidence            76554432             2222222211  122223    67888888642 12577888876   34533    44


Q ss_pred             HHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec--cccccCccccccccC-HHHHHhhcCCCc-c
Q 011669          277 LPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT-PEIAEVLTRRNY-F  351 (480)
Q Consensus       277 l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~-~~~~~~l~~~~~-~  351 (480)
                      +++|.++|++||+++|+||+|+ |+.+.| ...+  .++ .+|+.+||  |.++ |.++|+++++ +++++.+..... +
T Consensus       138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~--~~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~  212 (394)
T 1o69_A          138 MDEIVEICKENDIVLIEDAAEALGSFYKN-KALG--TFG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQA  212 (394)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCTTCEETT-EETT--SSS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTC
T ss_pred             HHHHHHHHHHcCCEEEEECcCcccceeCC-cccc--ccc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhc
Confidence            9999999999999999999998 665544 2110  111 36788885  6665 4689999995 787776643111 1


Q ss_pred             -------------ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe--ccce-eEEEEE
Q 011669          352 -------------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR--GRGF-LLGVEF  415 (480)
Q Consensus       352 -------------~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~--g~g~-~~~i~~  415 (480)
                                   .+++.+++.++++++.++.++  +..++.+++.+++++.|.++ -+.  .....  ..+. ++++.+
T Consensus       213 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~-~~~--~~~~~~~~~~~~~~~i~~  287 (394)
T 1o69_A          213 RENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEY-FSF--LDELENSRSNRWLSTALI  287 (394)
T ss_dssp             CCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTT-EEC--CCCCTTEECCCSSEEEEE
T ss_pred             cccCccccccccCcccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc-ccc--cCCCCCCcceeEEEEEEe
Confidence                         112246677777766665443  35677788888888888765 111  11111  0122 345555


Q ss_pred             ecCC-------------CcCCCCHHHHHHHHHHHHHcCceeeccCc-------CC---------------CEEEEeCCCC
Q 011669          416 VTDR-------------QLKTPAKAETLYIMDKMKEMGVLVGKGGF-------YG---------------NVFRITPPLC  460 (480)
Q Consensus       416 ~~~~-------------~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~---------------~~iRi~p~~~  460 (480)
                      ..+.             ............+.+.|.++||.+.++..       +.               ..+|+.....
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (394)
T 1o69_A          288 NFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTA  367 (394)
T ss_dssp             SCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTT
T ss_pred             cchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCC
Confidence            3110             00000012356788999999999987621       00               2345555667


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 011669          461 FTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       461 ~t~~~id~~l~~l~~~l~  478 (480)
                      +|++|+++++++|+++++
T Consensus       368 ~t~edi~~~~~~l~~~~~  385 (394)
T 1o69_A          368 MSKDDVYEISKLILKSIK  385 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            899999999999998875

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.88  E-value=6.8e-22  Score=204.16  Aligned_cols=291  Identities=18%  Similarity=0.153  Sum_probs=188.3

Q ss_pred             ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC
Q 011669          137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (480)
Q Consensus       137 ~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  216 (480)
                      .+.++...+++++++++++.  +++++++||++|+..++++   ..+++.||+.++.||+.........         ..
T Consensus       129 ~~g~~~~~~l~~~la~~~g~--~~~i~~~sGt~al~~~l~~---~~~Gd~Vi~~~~~y~~~~~~~~~~~---------~~  194 (464)
T 1ibj_A          129 RSGNPTRDALESLLAKLDKA--DRAFCFTSGMAALSAVTHL---IKNGEEIVAGDDVYGGSDRLLSQVV---------PR  194 (464)
T ss_dssp             TTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTT---SCTTCEEEEESSCCHHHHHHHHHTS---------GG
T ss_pred             CCCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHH---hCCCCEEEEECCCchhHHHHHHHHH---------HH
Confidence            44577888999999999864  4788999999999988762   3467899999999987643210000         00


Q ss_pred             CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc
Q 011669          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (480)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  296 (480)
                      .|+..+.+|.       .|    .+++++.++    +++++|++++++|++|.+.+    +++|.++|++||+++|+||+
T Consensus       195 ~G~~v~~v~~-------~d----~~~l~~~i~----~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea  255 (464)
T 1ibj_A          195 SGVVVKRVNT-------TK----LDEVAAAIG----PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNS  255 (464)
T ss_dssp             GTCEEEEECT-------TS----HHHHHHHCC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECT
T ss_pred             cCCEEEEeCC-------CC----HHHHHHHhc----cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECC
Confidence            1333333222       12    577887774    37899999999999998875    99999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCccee--eecccccc--CccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHh
Q 011669          297 QAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI  371 (480)
Q Consensus       297 ~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~--G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i  371 (480)
                      |.. |... .  ..+ ++  .|++  +++|.+++  |+++||++++ +++++.+.........+.+++++.++.++|+.+
T Consensus       256 ~~~-g~~~-~--~~~-~~--~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~  328 (464)
T 1ibj_A          256 IMS-PVLS-R--PLE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM  328 (464)
T ss_dssp             TTC-TTTC-C--GGG-TT--CSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH
T ss_pred             Ccc-cccC-C--hhh-cC--CEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhH
Confidence            963 2111 1  122 33  5666  68999985  8999999998 478777654322223445788888888777532


Q ss_pred             hh--hHHHHHHHHHHHHHHHHH------HHhHHhcCcee----eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc
Q 011669          372 QK--DKLQNNAHVVGSYLKERL------TALKDKYGIIG----DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM  439 (480)
Q Consensus       372 ~~--~~~~~~~~~~~~~l~~~L------~~l~~~~~~~~----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~  439 (480)
                      ..  +...+++..+.+++++.-      .+...+++.+.    ..++.|.++++++. .       ......+.+.|+..
T Consensus       329 ~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~-~-------~~~~~~~~~~L~~~  400 (464)
T 1ibj_A          329 ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-S-------VALSKHLVETTKYF  400 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-C-------HHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC-C-------HHHHHHHHHhcCcc
Confidence            21  112223333333322110      00001111111    12346778888862 1       11234577777777


Q ss_pred             CceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          440 GVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       440 Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||.+..|+                         ...+++||++++    +++++++++|++++++
T Consensus       401 gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~  461 (464)
T 1ibj_A          401 SIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             EECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred             eEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence            88776653                         113689999875    8999999999999875

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.88  E-value=2.2e-21  Score=196.84  Aligned_cols=290  Identities=14%  Similarity=0.079  Sum_probs=188.2

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccccccc-ccCCCcc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGA-TAQSNWK  211 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~-~~~~~~~  211 (480)
                      +....+.++...+|+++|+++.+.  +.+++++||++|++.++.+   ..+++.||+.++.|||........ ..     
T Consensus        59 ~~y~r~~~p~~~~l~~~la~l~g~--~~~~~~~sG~~Ai~~~~~l---~~~gd~Vi~~~~~y~~~~~~~~~~~~~-----  128 (400)
T 3nmy_A           59 FEYSRTHNPTRFAYERCVAALEGG--TRAFAFASGMAATSTVMEL---LDAGSHVVAMDDLYGGTFRLFERVRRR-----  128 (400)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTT---SCTTCEEEEESSCCHHHHHHHHHTHHH-----
T ss_pred             cccccCCCHHHHHHHHHHHHHhCC--CCEEEecCHHHHHHHHHHH---cCCCCEEEEeCCCchHHHHHHHHhhHh-----
Confidence            445677889999999999999864  4788999999999985442   236788999999998755443222 00     


Q ss_pred             ccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEE
Q 011669          212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (480)
Q Consensus       212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  291 (480)
                          ..|+....++.       +|    .++++++++    +++++|++|+++|++|.+.+    +++|+++|++||+++
T Consensus       129 ----~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~l  185 (400)
T 3nmy_A          129 ----TAGLDFSFVDL-------TD----PAAFKAAIR----ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLT  185 (400)
T ss_dssp             ----HHCCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEE
T ss_pred             ----hcCeEEEEECC-------CC----HHHHHHHhc----cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEE
Confidence                01222222221       12    577887774    37899999999999999876    999999999999999


Q ss_pred             EEcccccCccccCCCcccccccCCCcceeeecccccc-Cccccc--cc-cCHHHHHhhcCCCccccCCCcHHHHHHHHHH
Q 011669          292 IADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPLGA--VV-TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       292 I~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pig~--v~-~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~  367 (480)
                      |+||+|+.. ... .   ...++..+.+.+++|.+++ |.++|+  ++ .++++++.+.......+...+|+.+++++..
T Consensus       186 ivDe~~~~~-~~~-~---~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~  260 (400)
T 3nmy_A          186 VVDNTFASP-MLQ-R---PLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRG  260 (400)
T ss_dssp             EEECTTTHH-HHC-C---GGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHH
T ss_pred             EEECCCccc-ccC-C---hhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence            999999632 111 1   1123555555679999996 577765  33 4677887776544445566788888887777


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE------------------eccceeEEEEEecCCCcCCCCHHHH
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAET  429 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~  429 (480)
                      ++.+.  ...++..++..++.+.|+    +++.+..+                  +|.|.|++|++..+       ....
T Consensus       261 l~~l~--~r~~~~~~~a~~l~~~L~----~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~-------~~~~  327 (400)
T 3nmy_A          261 LKTLP--LRMRAHCENALALAQWLE----THPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG-------FDAA  327 (400)
T ss_dssp             HTTHH--HHHHHHHHHHHHHHHHHT----TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-------HHHH
T ss_pred             HhHHH--HHHHHHHHHHHHHHHHHH----cCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc-------HHHH
Confidence            66432  233444444555544443    34555555                  78899999998421       1234


Q ss_pred             HHHHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          430 LYIMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       430 ~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      ..+.+.|.-.++.+..|+                         ...+.+|++..+..+++    +++.|+++|
T Consensus       328 ~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~d----li~dl~~al  396 (400)
T 3nmy_A          328 KRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGD----LRGDLERAL  396 (400)
T ss_dssp             HHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHH----HHHHHHHHH
T ss_pred             HHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHH----HHHHHHHHH
Confidence            455555543333332221                         12468999976654444    445555554

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.87  E-value=1.3e-20  Score=193.30  Aligned_cols=293  Identities=16%  Similarity=0.101  Sum_probs=191.0

Q ss_pred             cccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcc
Q 011669          132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (480)
Q Consensus       132 ~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  211 (480)
                      .|....+.++...+++++|+++++..  ..++++||++|++.+++....  +++.||+.++.|++.........      
T Consensus       105 ~~~y~r~~~~~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~~~------  174 (445)
T 1qgn_A          105 SFEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETIL------  174 (445)
T ss_dssp             CCCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHSC--SSCEEEEETTSCHHHHHHHHHTG------
T ss_pred             CccccCCCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHHH------
Confidence            35455677899999999999998653  567888999999999986533  56889999999987433211000      


Q ss_pred             ccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCce-EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669          212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (480)
Q Consensus       212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  290 (480)
                         ...|+....++.       +|    .++++++++.    ++ ++|++|+++|++|.+.+    +++|.++|++||++
T Consensus       175 ---~~~G~~v~~v~~-------~d----~~~l~~ai~~----~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~  232 (445)
T 1qgn_A          175 ---PKMGITATVIDP-------AD----VGALELALNQ----KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGAL  232 (445)
T ss_dssp             ---GGGTCEEEEECS-------SC----HHHHHHHHHH----SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCE
T ss_pred             ---HHcCCEEEEeCC-------CC----HHHHHHHhcc----CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCE
Confidence               011333332221       13    6788888863    45 89999999999998876    99999999999999


Q ss_pred             EEEcccccCccccCCCcccccccCCCcceee--ecccccc-C-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHH
Q 011669          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA  366 (480)
Q Consensus       291 lI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a  366 (480)
                      +|+||+|+.. ...      ...+..+|+++  ++|.+++ | .++|++++++++++.+...........+|+.+.+++.
T Consensus       233 livD~a~~~~-~~~------~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~  305 (445)
T 1qgn_A          233 VCIDGTFATP-LNQ------KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIR  305 (445)
T ss_dssp             EEEECTTTCT-TTC------CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred             EEEECCCccc-ccC------CccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            9999999732 111      12234578775  7899986 3 4899999999988877542211112236776666666


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEecCCCcCCCCHHH
Q 011669          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKAE  428 (480)
Q Consensus       367 ~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~  428 (480)
                      .++.+.  ...++..+..+++.+.|++.    +.+..                  +++.|.+++|++...       ...
T Consensus       306 ~l~~l~--~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-------~~~  372 (445)
T 1qgn_A          306 GMKTLH--LRVQQQNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-------LLT  372 (445)
T ss_dssp             HGGGHH--HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-------HHH
T ss_pred             hHHHHH--HHHHHHHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-------HHH
Confidence            555432  12233344455555555543    32211                  235788899988421       122


Q ss_pred             HHHHHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          429 TLYIMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       429 ~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ...+.+.|...++.+..|+                         ...+.|||+..    .||+|.+++.|+++++++
T Consensus       373 ~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~~  445 (445)
T 1qgn_A          373 TAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDSI  445 (445)
T ss_dssp             HHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhhC
Confidence            4555555543344433321                         12368999955    468999999999998754

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.87  E-value=6.7e-21  Score=194.75  Aligned_cols=290  Identities=16%  Similarity=0.115  Sum_probs=189.8

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +....+.++...+++++|+++++..  ..++++||++|++.+++.+.  .++++||+..+.||+..........      
T Consensus        50 ~~y~~~~~~~~~~l~~~la~~~g~~--~~v~~~sGt~A~~~~l~~~~--~~gd~vi~~~~~~~~~~~~~~~~~~------  119 (421)
T 2ctz_A           50 NIYSRIMNPTVDVLEKRLAALEGGK--AALATASGHAAQFLALTTLA--QAGDNIVSTPNLYGGTFNQFKVTLK------  119 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEECSCCCHHHHHHHHTHHH------
T ss_pred             CcccCCCChHHHHHHHHHHHHhCCC--ceEEecCHHHHHHHHHHHHh--CCCCEEEEeCCCchHHHHHHHHHHH------
Confidence            4445567788999999999999653  56788889999999999763  4678999999999987655422110      


Q ss_pred             cccCCCeeEecC-CCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEE
Q 011669          213 NVVQTGVHHALN-PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (480)
Q Consensus       213 ~~~~~g~~~~~~-p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  291 (480)
                         ..|+....+ +.       +|    .+++++.++    +++++|++++++|++|.+.+    +++|.++|++||+++
T Consensus       120 ---~~g~~~~~~~~~-------~d----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~l  177 (421)
T 2ctz_A          120 ---RLGIEVRFTSRE-------ER----PEEFLALTD----EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVAL  177 (421)
T ss_dssp             ---HTTCEEEECCTT-------CC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEE
T ss_pred             ---HcCCEEEEECCC-------CC----HHHHHHhhc----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEE
Confidence               013333333 21       12    577888775    37899999999999998876    999999999999999


Q ss_pred             EEcccccCccccCCCcccccccCCCccee--eecccccc-CccccccccC---HHH----HHhhcCC---Ccc-------
Q 011669          292 IADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVTT---PEI----AEVLTRR---NYF-------  351 (480)
Q Consensus       292 I~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pig~v~~~---~~~----~~~l~~~---~~~-------  351 (480)
                      |+||+|+++|..+ ..+     +..+|++  +++|.+++ |.|+|++++.   +++    .+.+...   .++       
T Consensus       178 ivD~~~~~~g~~~-~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~  251 (421)
T 2ctz_A          178 IVDNTFGMGGYLL-RPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAF  251 (421)
T ss_dssp             EEECGGGGGGTSC-CGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHH
T ss_pred             EEECCcccccccC-Ccc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhc
Confidence            9999996677655 322     2347887  78899996 7899988774   122    1122211   000       


Q ss_pred             ----------------ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-----------
Q 011669          352 ----------------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-----------  404 (480)
Q Consensus       352 ----------------~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-----------  404 (480)
                                      .....+|+.+++++..++.+.  ...++..++.+++.+.|++    ++.+..+           
T Consensus       252 ~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~~~~~~~~  325 (421)
T 2ctz_A          252 GELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLE----QPQVAWVNYPGLPHHPHH  325 (421)
T ss_dssp             GGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTCTTH
T ss_pred             chhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHh----CCCeeEEECCCCCCCCCH
Confidence                            112457888777777776442  2233334555555555544    3434333           


Q ss_pred             --------eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------------------------cCCC
Q 011669          405 --------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------------------------FYGN  451 (480)
Q Consensus       405 --------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~  451 (480)
                              ++.|.++.|++...       ......+.+.+...++.+..|+                         ...+
T Consensus       326 ~~~~~~~~~~~g~ivsf~l~~~-------~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~  398 (421)
T 2ctz_A          326 DRAQKYFKGKPGAVLTFGLKGG-------YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPE  398 (421)
T ss_dssp             HHHHHHHTTCCCSEEEEEETTH-------HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTT
T ss_pred             HHHHHhccCCCceEEEEEeCCC-------HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCC
Confidence                    47788999988421       1234445555443443333221                         1137


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          452 VFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       452 ~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      .+|+++.+    +++|.+++.|++++
T Consensus       399 ~vRlS~g~----e~~~~li~~l~~al  420 (421)
T 2ctz_A          399 MVRLSVGL----EHVEDLKAELKEAL  420 (421)
T ss_dssp             EEEEECCS----SCHHHHHHHHHHHT
T ss_pred             eEEEEeCC----CCHHHHHHHHHHHh
Confidence            89999654    57888888888776

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.86  E-value=1.8e-20  Score=189.76  Aligned_cols=294  Identities=16%  Similarity=0.121  Sum_probs=188.6

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      |....+.++...+++++|+++++.+  .+++++||+||++.+++ ..  .+++.||+..+.||+.........       
T Consensus        47 ~~~~~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~--~~gd~Vi~~~~~y~~~~~~~~~~~-------  114 (393)
T 1n8p_A           47 YEYSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-SL--PQGSHAVSIGDVYGGTHRYFTKVA-------  114 (393)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TS--CSSCEEEEESSCCHHHHHHHHHTS-------
T ss_pred             cceecCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-Hc--CCCCEEEEeCCCchHHHHHHHHHH-------
Confidence            4445667788899999999999654  67788899999999999 32  356889999999987433210000       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh----C
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA----G  288 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~----g  288 (480)
                        ...|+....+|.        +   . ++++++++    +++++|++++++|++|.+.+    +++|.++|++|    |
T Consensus       115 --~~~G~~v~~v~~--------~---d-~~l~~~i~----~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~  172 (393)
T 1n8p_A          115 --NAHGVETSFTND--------L---L-NDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQD  172 (393)
T ss_dssp             --TTTCSCCEEESS--------H---H-HHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTT
T ss_pred             --HHcCcEEEEeCC--------C---h-HHHHHhcc----cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCC
Confidence              001222222211        1   1 46666664    37899999999999999876    99999999999    9


Q ss_pred             CEEEEcccccCccccCCCcccccccCCCccee--eecccccc-Cccc-cccccC-HHHHHhhcCCCccccCCCcHHHHHH
Q 011669          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAA  363 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G~pi-g~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aa  363 (480)
                      +++|+||+|+++.+.  ..+   .++  +|++  +++|.+++ |+|+ |+++++ +++++.+...........++..+++
T Consensus       173 ~~livD~a~~~~~~~--~~~---~~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~  245 (393)
T 1n8p_A          173 VILVVDNTFLSPYIS--NPL---NFG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWL  245 (393)
T ss_dssp             CEEEEECTTTHHHHC--CGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred             CEEEEeCCccccccC--CHH---HcC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            999999999876442  222   123  5666  78899995 8999 888885 7888777543221223346777777


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH---h--cCcee----------eEec-c-ceeEEEEEecCCCcCCCCH
Q 011669          364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKD---K--YGIIG----------DVRG-R-GFLLGVEFVTDRQLKTPAK  426 (480)
Q Consensus       364 a~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~---~--~~~~~----------~v~g-~-g~~~~i~~~~~~~~~~~~~  426 (480)
                      +.++++.+.  ...++..+....+.+.|++...   .  ++.+.          ..++ . |.+++|++..       ..
T Consensus       246 ~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~-------~~  316 (393)
T 1n8p_A          246 THRGLKTLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG-------GA  316 (393)
T ss_dssp             HHHHHTTHH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS-------CH
T ss_pred             HHhccchHH--HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCC-------cH
Confidence            666665432  2233334444445454443210   0  11110          0133 5 7788888832       12


Q ss_pred             HHHHHHHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          427 AETLYIMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       427 ~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      .....+...|...++.+..|+                         ...+.|||++....++++|+.+.++|+++
T Consensus       317 ~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          317 EAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             HHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            234555555543343332211                         11368999999999999999999999875

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.86  E-value=2.9e-20  Score=189.69  Aligned_cols=317  Identities=14%  Similarity=0.073  Sum_probs=196.3

Q ss_pred             CCHHHHHHHHHHHHhcccc---ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcC
Q 011669          116 CHPYVVDSIVNQIKRIQHS---TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN  192 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~---~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~  192 (480)
                      -+|++.+++.+++.+....   ...+..+...+++++|++.++.+  .+++++||++|++.+++.++. .++++|++..+
T Consensus        14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~-~~gd~Vl~~~~   90 (418)
T 2c81_A           14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGI-GEGDEVIVPSL   90 (418)
T ss_dssp             CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC-CTTCEEEEESS
T ss_pred             CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCC
Confidence            3689999999999874322   11222445889999999998643  678899999999999997632 35678999999


Q ss_pred             CcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeC
Q 011669          193 AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIEL  272 (480)
Q Consensus       193 ~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  272 (480)
                      +|++........             |...+.++... ..|..|    .+++++.++    +++++|++++   ++|... 
T Consensus        91 ~~~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~-  144 (418)
T 2c81_A           91 TWIATATAVLNV-------------NALPVFVDVEA-DTYCID----PQLIKSAIT----DKTKAIIPVH---LFGSMA-  144 (418)
T ss_dssp             SCTHHHHHHHHT-------------TCEEEEECBCT-TTCSBC----HHHHGGGCC----TTEEEECCBC---CTTCCC-
T ss_pred             ccHhHHHHHHHc-------------CCEEEEEecCC-CCCCcC----HHHHHHhhC----CCCeEEEEeC---CcCCcc-
Confidence            999876554322             22222222110 112223    566766664    3678888654   456544 


Q ss_pred             CCChHHHHHHHHHHhCCEEEEcccccCcc-ccCCCcccccccCCCcceeee--ccccccCccccccccC-HHHHHhhcCC
Q 011669          273 APGYLPAVYKSIKKAGGLCIADEVQAGFA-RTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTT-PEIAEVLTRR  348 (480)
Q Consensus       273 ~~~~l~~l~~l~~~~gillI~DEv~tgfg-r~G~~~~~~~~~~~~pDivt~--sK~~g~G~pig~v~~~-~~~~~~l~~~  348 (480)
                         .+++|.++|++||+++|+||+|+.+. ..+ ..+  ...+ ..++.+|  +|.+++| ++|+++++ +++++.+...
T Consensus       145 ---~~~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~--~~~~-~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~  216 (418)
T 2c81_A          145 ---NMDEINEIAQEHNLFVIEDCAQSHGSVWNN-QRA--GTIG-DIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQL  216 (418)
T ss_dssp             ---CHHHHHHHHHHTTCEEEEECTTCTTCEETT-EET--TSSS-SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHCCCEEEEECcccccCccCC-Eec--cccc-ceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHH
Confidence               39999999999999999999998764 233 111  1111 2344566  8999988 99999985 7776655421


Q ss_pred             C-ccc-----------cCC--------------CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee
Q 011669          349 N-YFN-----------TFG--------------GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG  402 (480)
Q Consensus       349 ~-~~~-----------t~~--------------~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  402 (480)
                      . ++.           .|.              .+++..+.+...++.+  ++..++.+++.+++.+.|.++    +.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~  290 (418)
T 2c81_A          217 RADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSKI----DGIK  290 (418)
T ss_dssp             HBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTS----TTEE
T ss_pred             HHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCcc
Confidence            1 000           011              2344333333333322  345555666666666666443    2222


Q ss_pred             eE-eccc----e--eEEEEEecCCCcCCCCHHHHHHHHHHHHHc-Cce---eeccCc-----------------------
Q 011669          403 DV-RGRG----F--LLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVL---VGKGGF-----------------------  448 (480)
Q Consensus       403 ~v-~g~g----~--~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~---v~~~~~-----------------------  448 (480)
                      .. ...+    .  ++.+.+.....    .......+.+.|.++ ||.   +.++..                       
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~  366 (418)
T 2c81_A          291 VMKRPPQVSRQTYYGYVFRFDPVKF----GGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKT  366 (418)
T ss_dssp             ECCCCTTEEECCCSEEEEEECGGGT----TTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCC
T ss_pred             cCCCCCCCcccccEEEEEEEccccc----cccCHHHHHHHHHHcCCCCcccccccccccccCchhccccccccccccccc
Confidence            21 1222    2  22345421000    001246788889998 999   765420                       


Q ss_pred             --------C-------CCEEEEeCCCCC-CHHHHHHHHHHHHHHHhh
Q 011669          449 --------Y-------GNVFRITPPLCF-TKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       449 --------~-------~~~iRi~p~~~~-t~~~id~~l~~l~~~l~~  479 (480)
                              .       .+.|||+++..+ |++||+.++++|++++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~  413 (418)
T 2c81_A          367 EAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK  413 (418)
T ss_dssp             HHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred             ccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence                    0       148999999899 999999999999998865

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.86  E-value=1.4e-20  Score=191.09  Aligned_cols=291  Identities=12%  Similarity=0.030  Sum_probs=189.0

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV  215 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  215 (480)
                      ..|.++...+|+++|+++++..  ..++++||++|+..+++ +  ..+++.|++.++.|++..........         
T Consensus        62 ~r~~~p~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~~~---------  127 (403)
T 3cog_A           62 SRSGNPTRNCLEKAVAALDGAK--YCLAFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQVAS---------  127 (403)
T ss_dssp             ----CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTGG---------
T ss_pred             cCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHHHH---------
Confidence            4567888999999999998654  55677888999999998 4  33678999999999874432211100         


Q ss_pred             CCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC-CEEEEc
Q 011669          216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG-GLCIAD  294 (480)
Q Consensus       216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g-illI~D  294 (480)
                      ..|+....++.       +|    .+++++.++    +++++|++++++|++|.+.+    +++|.++|++|| +++|+|
T Consensus       128 ~~G~~v~~v~~-------~d----~~~l~~~i~----~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD  188 (403)
T 3cog_A          128 EFGLKISFVDC-------SK----IKLLEAAIT----PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVD  188 (403)
T ss_dssp             GGTCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEE
T ss_pred             HcCCEEEEECC-------CC----HHHHHHhcC----cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEE
Confidence            01333333321       12    567777774    37899999999999998876    999999999999 999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      |+|+++.. + ..  +   +..+|++  +++|.+++ | .++|+++++ +++++.+.......+...+++.+.++++.|+
T Consensus       189 ~~~~~~~~-~-~~--~---~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~  261 (403)
T 3cog_A          189 NTFMSPYF-Q-RP--L---ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLK  261 (403)
T ss_dssp             CTTTCTTT-C-CT--T---TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred             CCCccccc-C-Cc--c---ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence            99986532 2 11  1   2346766  78899994 4 689999985 7888777654333445578888888877776


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHh----------HHhcCcee----eEeccceeEEEEEecCCCcCCCCHHHHHHHHHH
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTAL----------KDKYGIIG----DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK  435 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l----------~~~~~~~~----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  435 (480)
                      .+.  ...++..+....+.+.+++.          ...++.+.    ..++.|.++.+++...          .....+.
T Consensus       262 ~l~--~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~----------~~~~~~~  329 (403)
T 3cog_A          262 TLH--VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT----------LQHAEIF  329 (403)
T ss_dssp             THH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC----------HHHHHHH
T ss_pred             HHH--HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC----------HHHHHHH
Confidence            432  12333333333344444332          11111111    1234588888876321          1334556


Q ss_pred             HHHcCceeec---c-------------------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          436 MKEMGVLVGK---G-------------------------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       436 l~~~Gv~v~~---~-------------------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      +.+.|+++..   |                         +...+.+||++.+..++++|+.+.++|+++++
T Consensus       330 l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~  400 (403)
T 3cog_A          330 LKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP  400 (403)
T ss_dssp             HHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred             HHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence            6677876432   1                         11147899999998888888888888877654

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.86  E-value=7.6e-21  Score=193.28  Aligned_cols=322  Identities=10%  Similarity=0.002  Sum_probs=188.6

Q ss_pred             HHHHHHHHHHHHhc-cccccccCChHHHHHHHHHHHhC-C----CCCCEEEEeCCHHHHHHHHHHHHHh-h-cCCceEEE
Q 011669          118 PYVVDSIVNQIKRI-QHSTVLYLNHAIADFAEALASKM-P----GNLKVVFFTNSGTEANELAIMMARL-Y-TGCNDIIS  189 (480)
Q Consensus       118 p~v~~A~~~~~~~~-~~~~~~~~~~~~~~l~e~L~~~~-~----~~~~~v~f~~sGseA~~~Alk~ar~-~-~~~~~ii~  189 (480)
                      |.|.+|.++.++.. .|  ...+.....+|++.+++++ +    .+.....-|.+||.|+..++.++.. + .+++.|++
T Consensus        65 ~~Vk~A~~~~~~~~~~~--~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~i  142 (420)
T 4h51_A           65 RVVRKAEQLLLDMNLDY--EYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYL  142 (420)
T ss_dssp             HHHHHHHHHHHHTTCCC--CCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEE
T ss_pred             HHHHHHHHHHhcCCCCC--CCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEE
Confidence            78888877666543 12  1223456677777777654 1    1112345588999999999876543 2 36788999


Q ss_pred             EcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcc
Q 011669          190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI  269 (480)
Q Consensus       190 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  269 (480)
                      .+|+|..+........+...          ...++.+  ...++.|    .+.+.+.++.. .++..+++..+.+|++|.
T Consensus       143 p~P~w~~y~~i~~~aG~~~V----------~~~~~~~--~~~~~~d----~~~~~~~l~~~-~~~~~vll~~~p~NPtG~  205 (420)
T 4h51_A          143 SDPTWPNHYGVVKAAGWKNI----------CTYAYYD--PKTVSLN----FEGMKKDILAA-PDGSVFILHQCAHNPTGV  205 (420)
T ss_dssp             EESCCTHHHHHHHHTTCCCE----------EEEECEE--GGGTEEC----HHHHHHHHHHS-CSSCEEEEESSSCTTTCC
T ss_pred             ecCCchhHHHHHHHcCCeEE----------Eeecccc--ccccCCC----HHHHHHHHhcc-CCCcEEEEeCCCCCCCCC
Confidence            99999765544443332111          1111100  0111123    34444555443 346677777878888887


Q ss_pred             eeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC--cccc----cccCCCcceeeeccccc-cCccccccccCHHHH
Q 011669          270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH--FWGF----EAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIA  342 (480)
Q Consensus       270 ~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~--~~~~----~~~~~~pDivt~sK~~g-~G~pig~v~~~~~~~  342 (480)
                      + ++++.+++|.++|+++++++|+||+|.+|...+..  .+..    +......-+.+|||.++ .|+|+||+++..+..
T Consensus       206 ~-~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~  284 (420)
T 4h51_A          206 D-PSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDK  284 (420)
T ss_dssp             C-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCH
T ss_pred             C-CCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCH
Confidence            6 58999999999999999999999999999754311  1111    11111222348999999 699999998764433


Q ss_pred             HhhcC-------CCccccCCCcHHHHHHHHHHHHHhh-hh-------HHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc
Q 011669          343 EVLTR-------RNYFNTFGGNPVCTAAGHAVLKVIQ-KD-------KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR  407 (480)
Q Consensus       343 ~~l~~-------~~~~~t~~~~~~~~aaa~a~L~~i~-~~-------~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  407 (480)
                      +....       .......+.+..++.++...|..-. ..       ...++++++++.+.+.|+++.-...+-......
T Consensus       285 ~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~  364 (420)
T 4h51_A          285 TKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQI  364 (420)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCC
T ss_pred             HHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCC
Confidence            22211       1112233444555555555553100 01       223334444444444444431100011113456


Q ss_pred             ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |+|.++.+.             .+.++.|+++||++.++|      ||+.. ..+++.|+.++++|.+++++
T Consensus       365 GmF~~~gls-------------~e~v~~L~e~~Vy~~~~g------Ris~A-gl~~~ni~~~a~aI~~vvr~  416 (420)
T 4h51_A          365 GMFSFLGLS-------------KAQCEYCQNHNIFITVSG------RANMA-GLTHETALMLAQTINDAVRN  416 (420)
T ss_dssp             SSEEECCCC-------------HHHHHHHHHTTEECCTTC------EEEGG-GCCHHHHHHHHHHHHHHHC-
T ss_pred             ceEEecCcC-------------HHHHHHHHhCCEEEcCCC------EEEec-cCCHHHHHHHHHHHHHHHHH
Confidence            777665431             123567889999988754      88854 46999999999999999875

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.86  E-value=2.3e-19  Score=181.27  Aligned_cols=305  Identities=14%  Similarity=0.126  Sum_probs=198.6

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH-----hhcCCceEEEE
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR-----LYTGCNDIISL  190 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar-----~~~~~~~ii~~  190 (480)
                      -+|++.+++.+++....+    +..+...+++++|+++++.  +.++|++||++|++.+++.++     ...++++|++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~   86 (390)
T 3b8x_A           13 WDDLEYKAIQSVLDSKMF----TMGEYVKQYETQFAKTFGS--KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVP   86 (390)
T ss_dssp             CCHHHHHHHHHHHHHTCC----SSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHcCCC----CCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEEC
Confidence            368999999999876432    3468889999999999965  468899999999999999773     13456889999


Q ss_pred             cCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcce
Q 011669          191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII  270 (480)
Q Consensus       191 ~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  270 (480)
                      .++||+........             |...+.++.... .+.-|    .+++++.++    +++++|++.+.   .|..
T Consensus        87 ~~~~~~~~~~~~~~-------------g~~~~~~~~~~~-~~~~d----~~~l~~~i~----~~~~~v~~~~~---~g~~  141 (390)
T 3b8x_A           87 AVSWSTTYYPLQQY-------------GLRVKFVDIDIN-TLNID----IESLKEAVT----DSTKAILTVNL---LGNP  141 (390)
T ss_dssp             SSSCHHHHHHHHHT-------------TCEEEEECBCTT-TCSBC----HHHHHHHCC----TTEEEEEEECG---GGCC
T ss_pred             CCCcHHHHHHHHHc-------------CCEEEEEecCcc-ccCcC----HHHHHHHhC----cCCeEEEEECC---ccCh
Confidence            99999877654432             222222221100 12223    677887774    26777777532   3333


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeeccccccCc---cccccccCH-HHHHhh
Q 011669          271 ELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI---PLGAVVTTP-EIAEVL  345 (480)
Q Consensus       271 ~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~---pig~v~~~~-~~~~~l  345 (480)
                          ..+++|.++|++||+++|+||+|+ |...      .....+..+|+.++||..+.++   +.|++++++ ++.+.+
T Consensus       142 ----~~~~~i~~l~~~~~~~li~D~a~~~g~~~------~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~  211 (390)
T 3b8x_A          142 ----NNFDEINKIIGGRDIILLEDNCESMGATF------NNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHIL  211 (390)
T ss_dssp             ----CCHHHHHHHHTTSCCEEEEECTTCTTCEE------TTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHH
T ss_pred             ----hhHHHHHHHHHHcCCEEEEECcCcccCEE------CCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHH
Confidence                349999999999999999999998 3222      1234567789998886554221   347888775 665433


Q ss_pred             cC---CC----------------------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 011669          346 TR---RN----------------------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL  394 (480)
Q Consensus       346 ~~---~~----------------------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l  394 (480)
                      ..   ..                            .+.++..+++.++++++.|+.++  +..++.+++.+++++.|+++
T Consensus       212 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~  289 (390)
T 3b8x_A          212 LCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDH  289 (390)
T ss_dssp             HHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC
Confidence            21   11                            01233367888888888887553  45667777777777776653


Q ss_pred             HHhcCceeeEe--ccce--eEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc---C-----c-CC-----------
Q 011669          395 KDKYGIIGDVR--GRGF--LLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG---G-----F-YG-----------  450 (480)
Q Consensus       395 ~~~~~~~~~v~--g~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---~-----~-~~-----------  450 (480)
                          +.+....  ....  .+.+.+....      ......+.+.|.++||.+.+.   .     . +.           
T Consensus       290 ----~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (390)
T 3b8x_A          290 ----PYLDVQQETGESSWFGFSFIIKKDS------GVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVD  359 (390)
T ss_dssp             ----SSEEECCCCSBCCCCEEEEEECTTS------CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCH
T ss_pred             ----CCcccCCCCCCcccEEEEEEecCcC------cccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCCh
Confidence                2221111  1222  2444442110      011466888899999998762   1     0 00           


Q ss_pred             -------CEEEEeCCCCCCHHHHHHHHHHH
Q 011669          451 -------NVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       451 -------~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                             +.|||+....+|++|++++++.|
T Consensus       360 ~~~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          360 NAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             HHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             HHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence                   25999999999999999999876

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.85  E-value=3.3e-21  Score=195.08  Aligned_cols=319  Identities=10%  Similarity=0.031  Sum_probs=189.8

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHH-hccccccccCC-hHH-----HHHHHHHHHhCCC-----CC-CEEEE
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQHSTVLYLN-HAI-----ADFAEALASKMPG-----NL-KVVFF  163 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~-~~~~~~~~~~~-~~~-----~~l~e~L~~~~~~-----~~-~~v~f  163 (480)
                      .|...|||..|.+..   ..++.+.+++.+.+. ........|.. ...     .+|++.+++++..     .. ++|++
T Consensus        20 ~~~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~   96 (391)
T 3bwn_A           20 MSDFVVNLDHGDPTA---YEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVV   96 (391)
T ss_dssp             TTTSCEECSSCCCGG---GHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEE
T ss_pred             CCCCeeEcCCCCCCC---CCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEE
Confidence            456678988776643   112344444322111 00011122332 222     6777777776531     23 58999


Q ss_pred             eCCHHHHHHHHHHHHHhhcCCc----eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHH
Q 011669          164 TNSGTEANELAIMMARLYTGCN----DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY  239 (480)
Q Consensus       164 ~~sGseA~~~Alk~ar~~~~~~----~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~  239 (480)
                      |+|+++|+..+++....  +++    .|++.+++|.++......... ..          ..++.          |    
T Consensus        97 t~G~~~al~~~~~~l~~--~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~-~~----------~~~~~----------d----  149 (391)
T 3bwn_A           97 GTGSTQLCQAAVHALSS--LARSQPVSVVAAAPFYSTYVEETTYVRS-GM----------YKWEG----------D----  149 (391)
T ss_dssp             EEHHHHHHHHHHHHHHH--TSSSSSEEEEECSSCCTHHHHHHHTTCB-TT----------EEEEE----------E----
T ss_pred             eCChHHHHHHHHHHhcC--CCCCCcceEEEcCCCchhHHHHHHHcCC-eE----------EEecC----------C----
Confidence            99999999999987654  566    899999999876554432211 11          11111          0    


Q ss_pred             HHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH-hC--CEEEEcccccCccccCCCcccccccCCC
Q 011669          240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AG--GLCIADEVQAGFARTGSHFWGFEAHGVV  316 (480)
Q Consensus       240 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~g--illI~DEv~tgfgr~G~~~~~~~~~~~~  316 (480)
                      .+.++       ..++++|++...+|++|.+. +     +|   |++ |+  +++|+||+|.. +. . .... ...+..
T Consensus       150 ~~~l~-------~~~~k~v~l~~p~NPtG~~~-~-----~l---~~~~~~~~~~ii~De~y~~-~~-~-~~l~-~~~~~~  209 (391)
T 3bwn_A          150 AWGFD-------KKGPYIELVTSPNNPDGTIR-E-----TV---VNRPDDDEAKVIHDFAYYW-PH-Y-TPIT-RRQDHD  209 (391)
T ss_dssp             STTCC-------CCSCEEEEEESSCTTTCCCC-C-----CC---C-----CCCEEEEECTTCS-TT-T-SCCC-CCBCCS
T ss_pred             HHHcC-------CCCCEEEEECCCCCCCchhH-H-----HH---HHHhhcCCCEEEEeCCCCC-CC-C-Cccc-cCCCCe
Confidence            01111       12566776666677888775 2     22   334 66  99999999963 21 1 1111 122333


Q ss_pred             cceeeeccccc-cCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHH
Q 011669          317 PDIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--------DKLQNNAHVVGSY  386 (480)
Q Consensus       317 pDivt~sK~~g-~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~--------~~~~~~~~~~~~~  386 (480)
                      ..+.+|||.+| .|+|+||+++ ++++++.+.......+++.+++++.++.++|+...+        +.+.+++++.-+.
T Consensus       210 i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (391)
T 3bwn_A          210 IMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKN  289 (391)
T ss_dssp             EEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHH
T ss_pred             EEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHH
Confidence            44558999998 7999999997 889988877654445678899999999998875321        2333333333333


Q ss_pred             HHHHHHHhHHhcCceee--------------EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---
Q 011669          387 LKERLTALKDKYGIIGD--------------VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---  449 (480)
Q Consensus       387 l~~~L~~l~~~~~~~~~--------------v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---  449 (480)
                      .++.+.+..++++.+..              ....|+++|+.+...           ..+.+.|.++||.+.++..+   
T Consensus       290 ~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~-----------~~~~~~l~~~gV~v~pg~~fg~~  358 (391)
T 3bwn_A          290 RWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE-----------TDLVSELRRHKVMSRAGERCGSD  358 (391)
T ss_dssp             HHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS-----------CCHHHHHHHTTEECEEGGGGTCC
T ss_pred             HHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH-----------HHHHHHHHHCCEEEccCCCCCCC
Confidence            33333333333332211              123456788887321           23566778899999998655   


Q ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          450 GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       450 ~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+++||++.  .+++++++++++|.++++
T Consensus       359 ~~~iRis~~--~~~e~i~~~~~~L~~~~~  385 (391)
T 3bwn_A          359 KKHVRVSML--SREDVFNVFLERLANMKL  385 (391)
T ss_dssp             TTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred             CCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            468999955  589999999999987654

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.85  E-value=2.6e-20  Score=185.67  Aligned_cols=321  Identities=9%  Similarity=0.011  Sum_probs=194.1

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc------cccc-cc--CChHHHHHHHHHHHhCCCC-CCEEEEeCCH-H
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ------HSTV-LY--LNHAIADFAEALASKMPGN-LKVVFFTNSG-T  168 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~------~~~~-~~--~~~~~~~l~e~L~~~~~~~-~~~v~f~~sG-s  168 (480)
                      +++++..|..     ..+|.|.+|+.+.+.+..      +... .+  ..+...+++++++++++.. .++|+|++|+ +
T Consensus         3 ~~~~~~~g~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt   77 (360)
T 1w23_A            3 QVFNFNAGPS-----ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGAS   77 (360)
T ss_dssp             CCEECCSSSC-----CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred             ceEeecCCCc-----CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcch
Confidence            3455555532     367999999998775420      0000 01  1234678999999998764 3589999988 9


Q ss_pred             HHHHHHHHHHHhhcCCc-eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHH-H
Q 011669          169 EANELAIMMARLYTGCN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD-L  246 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~-~  246 (480)
                      +|++.++.......++. .|+....+|+. ... ...            .| ..+.+|......+ .|    .+++++ .
T Consensus        78 ~al~~~~~~l~~~~~~g~~vi~~~~~~~~-~~~-~~~------------~g-~~~~v~~~~~~~~-~d----~~~l~~~~  137 (360)
T 1w23_A           78 LQFTMLPMNLLTKGTIGNYVLTGSWSEKA-LKE-AKL------------LG-ETHIAASTKANSY-QS----IPDFSEFQ  137 (360)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEECSHHHHHH-HHH-HHT------------TS-EEEEEEECGGGTS-CS----CCCGGGCC
T ss_pred             HHHHHHHHHhcCCCCcccEEEecchhHHH-HHH-HHH------------hC-CeEEeecccccCc-CC----ccchHhhc
Confidence            99999987654321112 33332222221 111 111            12 2211111100001 11    234544 4


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--eecc
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAK  324 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK  324 (480)
                      ++    +++++|++.++++++|.+.+         +++++||+++|+||+|+.+...    .....+    |++  +++|
T Consensus       138 i~----~~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~----~~~~~~----di~~~s~sK  196 (360)
T 1w23_A          138 LN----ENDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP----LKVNQF----GMIYAGAQK  196 (360)
T ss_dssp             CC----TTEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC----CCGGGC----SEEEEETTT
T ss_pred             cC----CCCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCCCC----cCcccC----CEEEEEccc
Confidence            42    36888998888999998753         2233899999999999854321    112222    565  4669


Q ss_pred             ccccCccccccccCHHHHHhhcCCC-----------ccccC-CCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHH
Q 011669          325 GIGNGIPLGAVVTTPEIAEVLTRRN-----------YFNTF-GGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLK  388 (480)
Q Consensus       325 ~~g~G~pig~v~~~~~~~~~l~~~~-----------~~~t~-~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~  388 (480)
                      .++. -++||+++++++++.+....           ...++ +.+..+++++.++|+.+.++    .+.++.+++.+++.
T Consensus       197 ~~~~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~  275 (360)
T 1w23_A          197 NLGP-SGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIY  275 (360)
T ss_dssp             TTSC-TTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             ccCC-CCcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            9973 24899999999887665432           11222 34566677777888776543    34555666666666


Q ss_pred             HHHHHhHHhcC-ceeeE--e-cc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCH
Q 011669          389 ERLTALKDKYG-IIGDV--R-GR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTK  463 (480)
Q Consensus       389 ~~L~~l~~~~~-~~~~v--~-g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~  463 (480)
                      +.|+++    + .....  . .. +.++++.+.        .......+.+.|.++||.+.++..+.+++||+++...++
T Consensus       276 ~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~  343 (360)
T 1w23_A          276 DTIDES----NGFYVGHAEKGSRSLMNVTFNLR--------NEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPI  343 (360)
T ss_dssp             HHHHTT----TTSSEESSCGGGBCSSEEEEECS--------SHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCH
T ss_pred             HHHHHc----cCcccccCCchhccCcEEEEEcC--------CCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCH
Confidence            666553    3 21211  1 12 447777762        223356688889999999988755567899999888899


Q ss_pred             HHHHHHHHHHHHHHhh
Q 011669          464 EDADYLVDVMDYSLSK  479 (480)
Q Consensus       464 ~~id~~l~~l~~~l~~  479 (480)
                      +++++++++|++++++
T Consensus       344 ~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          344 DACIALRELMIQFKEN  359 (360)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998865

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.84  E-value=1.3e-18  Score=181.95  Aligned_cols=313  Identities=12%  Similarity=-0.005  Sum_probs=186.2

Q ss_pred             HHHHHHHHHHhCCCC--CCEEEEeCCHHHHHHHHHHHHHhh-------cC----Cc-eEEEEcCCcccccccccccccCC
Q 011669          143 IADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLY-------TG----CN-DIISLRNAYHGNAAGTMGATAQS  208 (480)
Q Consensus       143 ~~~l~e~L~~~~~~~--~~~v~f~~sGseA~~~Alk~ar~~-------~~----~~-~ii~~~~~yhG~~~~~~~~~~~~  208 (480)
                      ..+++++++++++.+  .+.++|++||||||..|++.++..       .|    .+ .|++.+.+|+. ...+....+.+
T Consensus       134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s-~~~~~~~~g~g  212 (504)
T 2okj_A          134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS-IKKAGAALGFG  212 (504)
T ss_dssp             HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH-HHHHHHHTTSC
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH-HHHHHHHcCCC
Confidence            345667778888655  568999999999999999998753       23    13 45555555443 33222222210


Q ss_pred             CccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH
Q 011669          209 NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK  286 (480)
Q Consensus       209 ~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~  286 (480)
                      .       ..+..++...    .+.-|    .++|++.|+..  ...++++|++...++++|.+.+    +++|.++|++
T Consensus       213 ~-------~~v~~v~~~~----~~~~d----~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~  273 (504)
T 2okj_A          213 T-------DNVILIKCNE----RGKII----PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEK  273 (504)
T ss_dssp             G-------GGEEEECBCT----TSCBC----HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHH
T ss_pred             c-------ccEEEEecCC----CCCCC----HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHH
Confidence            0       0123333221    12223    57787777531  1125788888888888898866    9999999999


Q ss_pred             hCCEEEEcccccCccccCCCcccccccCC-Ccceeeec--cccccCccccccccCH-HHHHh-hcC---CCc-ccc----
Q 011669          287 AGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTP-EIAEV-LTR---RNY-FNT----  353 (480)
Q Consensus       287 ~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~s--K~~g~G~pig~v~~~~-~~~~~-l~~---~~~-~~t----  353 (480)
                      ||+++++|++|.++.... .-+.....++ .+|+++++  |.+++++++|++++++ +++.. +..   ... ...    
T Consensus       274 ~g~~lhvD~a~~~~~~~~-~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (504)
T 2okj_A          274 YNLWLHVDAAWGGGLLMS-RKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDV  352 (504)
T ss_dssp             HTCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCG
T ss_pred             cCCEEEEehhhhhHHHhC-HhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccC
Confidence            999999999999775432 1111222344 57888775  9998778999999886 46543 211   110 011    


Q ss_pred             ------C------CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE---eccceeEEEEEecC
Q 011669          354 ------F------GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV---RGRGFLLGVEFVTD  418 (480)
Q Consensus       354 ------~------~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~i~~~~~  418 (480)
                            +      ..+.+.+.++++++..-.-++..++..++.+++.+.|+++    +.+..+   .....++.+.+...
T Consensus       353 ~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~p~~~~v~f~~~~~  428 (504)
T 2okj_A          353 SYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIPQ  428 (504)
T ss_dssp             GGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTEEESSSSCCSSSCEEEEECCG
T ss_pred             cCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeCc
Confidence                  0      1135566555555542111234556666666776666553    222222   13344444544321


Q ss_pred             CC-cCCCCH-------HHHHHHHHHHHHcCceeec-cCcCC--CEEEEeCC-CCCCHHHHHHHHHHHHHHHhhC
Q 011669          419 RQ-LKTPAK-------AETLYIMDKMKEMGVLVGK-GGFYG--NVFRITPP-LCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       419 ~~-~~~~~~-------~~~~~~~~~l~~~Gv~v~~-~~~~~--~~iRi~p~-~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      .. ......       .....+.+.|.++|+++.. ....+  +++||++. ..+|++||++++++|+++++++
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          429 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             GGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             cccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            10 000000       0135678888999965432 22212  58999985 7789999999999999987653

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.84  E-value=1.9e-19  Score=179.82  Aligned_cols=323  Identities=13%  Similarity=0.074  Sum_probs=198.2

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-------cccccC--ChHHHHHHHHHHHhCCCCCC-E-EEEeCC
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-------STVLYL--NHAIADFAEALASKMPGNLK-V-VFFTNS  166 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-------~~~~~~--~~~~~~l~e~L~~~~~~~~~-~-v~f~~s  166 (480)
                      ++.|+|..+.      ...+|+|.+|+.+.+.+...       ....+.  .+...+++++++++++.+.+ + +++++|
T Consensus         3 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g   76 (362)
T 2c0r_A            3 ERAYNFNAGP------AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGG   76 (362)
T ss_dssp             CCCEECCSSS------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSH
T ss_pred             cceeeccCCC------CCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC
Confidence            4556664432      14689999999987754210       011111  23467899999999876543 5 577899


Q ss_pred             HHHHHHHHHHHHHhhcCCceEEEEcCCcccccc-cccccccCCCccccccCCCeeEecCCCCcCCCCC--CChHHHHHHH
Q 011669          167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG--ADGEMYAKDV  243 (480)
Q Consensus       167 GseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~-~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~--~d~~~~~~~l  243 (480)
                      |++|+..+++...  .++++|++.++++++... ......+ .          +..++.+.  ...++  .|    .+++
T Consensus        77 ~t~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~~~g-~----------~~~v~~~~--~~~~~~~~~----~~~~  137 (362)
T 2c0r_A           77 ASTQFAMIPMNFL--KEGQTANYVMTGSWASKALKEAKLIG-D----------THVAASSE--ASNYMTLPK----LQEI  137 (362)
T ss_dssp             HHHHHHHHHHHHC--CTTCEEEEEECSHHHHHHHHHHHHHS-C----------EEEEEECG--GGTTCSCCC----GGGC
T ss_pred             chHHHHHHHHhcC--CCCCeEEEEecCcHhHHHHHHHHHhC-C----------eEEEeccc--ccccccCCC----HHHc
Confidence            9999999998654  356788888777665321 1111111 1          11222110  00011  12    1122


Q ss_pred             HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCccee--e
Q 011669          244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--T  321 (480)
Q Consensus       244 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t  321 (480)
                      +  +    .+++++|++.+.++++|.+..+   +++|      ||+++|+||+|. +|..   .....  +.  |++  +
T Consensus       138 ~--i----~~~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~---~~~~~--~~--d~~~~s  194 (362)
T 2c0r_A          138 Q--L----QDNAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR---PFDLN--QF--GLVYAG  194 (362)
T ss_dssp             C--C----CTTEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS---CCCGG--GC--SEEEEE
T ss_pred             c--c----CCCcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhh-ccCC---ccchh--HC--cEEEEe
Confidence            1  2    2368888888778888986322   4443      899999999997 3321   11122  22  555  6


Q ss_pred             eccccc-cCccccccccCHHHHHhhcCCC------------ccccCCCcHHHHHHHHHHHHHhhh----hHHHHHHHHHH
Q 011669          322 MAKGIG-NGIPLGAVVTTPEIAEVLTRRN------------YFNTFGGNPVCTAAGHAVLKVIQK----DKLQNNAHVVG  384 (480)
Q Consensus       322 ~sK~~g-~G~pig~v~~~~~~~~~l~~~~------------~~~t~~~~~~~~aaa~a~L~~i~~----~~~~~~~~~~~  384 (480)
                      ++|.+| .|  +||+++++++++.+....            ....++.|+.+++++.++|+.+.+    +...++.+++.
T Consensus       195 ~~K~~g~~G--~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  272 (362)
T 2c0r_A          195 AQKNLGPSG--VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKA  272 (362)
T ss_dssp             TTTTTCCSS--CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             ccccccCcC--cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            789997 35  899999998876665321            012346677888888899987654    34556666666


Q ss_pred             HHHHHHHHHhHHhc-CceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCC
Q 011669          385 SYLKERLTALKDKY-GIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT  462 (480)
Q Consensus       385 ~~l~~~L~~l~~~~-~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t  462 (480)
                      +++++.|+++. .+ ...... ...+.++++.+        +.......+.+.|.++||.+.++..+.+.+||++...++
T Consensus       273 ~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~  343 (362)
T 2c0r_A          273 SLIYDAIDQSG-GFYRGCVDVDSRSDMNITFRL--------ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVP  343 (362)
T ss_dssp             HHHHHHHHTST-TSSEESSCGGGBCSSEEEEEC--------SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSC
T ss_pred             HHHHHHHHHcC-CccccCCChHHcCCcEEEEEc--------CCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCC
Confidence            66666665541 01 111100 11234455554        222345678888999999887765445679999887789


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011669          463 KEDADYLVDVMDYSLSK  479 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~~  479 (480)
                      ++|+++++++|++++++
T Consensus       344 ~e~i~~l~~~l~~~~~~  360 (362)
T 2c0r_A          344 YESCEALVQFMEHFKRS  360 (362)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998764

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.83  E-value=2e-18  Score=181.00  Aligned_cols=315  Identities=14%  Similarity=0.094  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh-------cC-----CceEEEEcCCcccccccccccccCCC
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-------TG-----CNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~-------~~-----~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      ...+++++|+++++.+.+.++|++||||||..|++.+|.+       .|     +..|++.+.. |.....+....+.+.
T Consensus       149 le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~-h~s~~~~~~~~g~g~  227 (515)
T 2jis_A          149 MEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC-HYSIQKGAAFLGLGT  227 (515)
T ss_dssp             HHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTSCG
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc-cHHHHHHHHHcCCCC
Confidence            3466778899998766678999999999999999998743       12     1155555554 444443333322110


Q ss_pred             ccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh
Q 011669          210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (480)
Q Consensus       210 ~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  287 (480)
                             ..+..++...    .+..|    .++|++.++..  ...++++|++...++++|.+.+    +++|.++|++|
T Consensus       228 -------~~v~~v~~~~----~~~~d----~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~  288 (515)
T 2jis_A          228 -------DSVRVVKADE----RGKMV----PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRH  288 (515)
T ss_dssp             -------GGEEEECBCT----TSCBC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHH
T ss_pred             -------CcEEEEecCC----CCcCC----HHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHc
Confidence                   0233333221    11123    56787777531  1225889999988888998876    99999999999


Q ss_pred             CCEEEEcccccCccccCCCcccccccCC-Ccceeee--ccccccCccccccccCHH--HHHhh-c---CCC-c-------
Q 011669          288 GGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE--IAEVL-T---RRN-Y-------  350 (480)
Q Consensus       288 gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~--sK~~g~G~pig~v~~~~~--~~~~l-~---~~~-~-------  350 (480)
                      |+++|+|++|+++.... ..+.....++ .+|++++  +|.+++++++|+++++++  +++.. .   ... .       
T Consensus       289 g~~l~vD~a~~~~~~~~-~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~  367 (515)
T 2jis_A          289 GLWLHVDAAWGGSVLLS-QTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV  367 (515)
T ss_dssp             TCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred             CCeEEEehhhhhHHHhC-hhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence            99999999999876544 2222223355 6788877  799987788999998866  65531 1   111 0       


Q ss_pred             ---cccC------CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc
Q 011669          351 ---FNTF------GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL  421 (480)
Q Consensus       351 ---~~t~------~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~  421 (480)
                         ..++      ....+.+.++++++....-+++.++..++.+++.+.|+++. .+..+..  .....+.+.+......
T Consensus       368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~-g~~~~~~--~~~~~v~f~~~p~~~~  444 (515)
T 2jis_A          368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKRE-GFELVME--PEFVNVCFWFVPPSLR  444 (515)
T ss_dssp             GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TEEESSC--CSSSEEEEEECCGGGT
T ss_pred             cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEeCC--CCeeEEEEEEeCcccc
Confidence               0111      01134444444444321123456666777777777776641 1111111  1223334433221000


Q ss_pred             C--CCCH--HH----HHHHHHHHHHcCceeec-c--CcCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHhhC
Q 011669          422 K--TPAK--AE----TLYIMDKMKEMGVLVGK-G--GFYGNVFRITP-PLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       422 ~--~~~~--~~----~~~~~~~l~~~Gv~v~~-~--~~~~~~iRi~p-~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      .  .+..  ..    ...+.+.|.+.|+++.. .  ....+++||++ +..+|++||++++++|+++++++
T Consensus       445 ~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~  515 (515)
T 2jis_A          445 GKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL  515 (515)
T ss_dssp             TCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence            0  0111  11    12367788889976532 1  11135899999 78899999999999999988764

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.83  E-value=3e-18  Score=176.60  Aligned_cols=327  Identities=16%  Similarity=0.038  Sum_probs=194.3

Q ss_pred             CCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCCCC-----EEEEeCCHHHHHHHHHHHHHhh-------
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLK-----VVFFTNSGTEANELAIMMARLY-------  181 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~~~-----~v~f~~sGseA~~~Alk~ar~~-------  181 (480)
                      .+|.+.+++.+.+.........++  .....+++++++++++.+.+     .+++++||||||..+++.++..       
T Consensus        54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~  133 (452)
T 2dgk_A           54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA  133 (452)
T ss_dssp             CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            468999999887754321111121  23356777888888876544     4899999999999999887641       


Q ss_pred             cC----CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669          182 TG----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (480)
Q Consensus       182 ~~----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~  257 (480)
                      .|    ++.||+.+  .|.....+....            |+..+.+|... ..|..|    .++|++.|+    +++++
T Consensus       134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~------------G~~v~~v~~~~-~~~~~d----~~~l~~~i~----~~t~~  190 (452)
T 2dgk_A          134 AGKPTDKPNLVCGP--VQICWHKFARYW------------DVELREIPMRP-GQLFMD----PKRMIEACD----ENTIG  190 (452)
T ss_dssp             TTCCCSCCEEEESS--CCHHHHHHHHHT------------TCEEEECCCBT-TBCSCC----HHHHHHHCC----TTEEE
T ss_pred             cCCCCCCcEEEECC--CcHHHHHHHHHc------------CceEEEEecCC-CCCeEC----HHHHHHHHh----hCCEE
Confidence            23    34677655  554433333222            33333333211 122234    678888875    25778


Q ss_pred             EEEcccCCCCcceeCCCChHHHHHHHHHHh------CCEEEEcccccCccc---cCCCcccccccCCCcceeeec--ccc
Q 011669          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKA------GGLCIADEVQAGFAR---TGSHFWGFEAHGVVPDIVTMA--KGI  326 (480)
Q Consensus       258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~tgfgr---~G~~~~~~~~~~~~pDivt~s--K~~  326 (480)
                      |++...++++|.+.+    +++|.++|++|      |+++++|++|.++..   .+...+.+..  ...|+++++  |.+
T Consensus       191 v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~  264 (452)
T 2dgk_A          191 VVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFG  264 (452)
T ss_dssp             EECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTT
T ss_pred             EEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECccccc
Confidence            888877778888876    99999999996      999999999987632   1210111111  135666654  966


Q ss_pred             ccCccccccccCHH-HH-HhhcCCC-c-cc---c--C--CCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHH
Q 011669          327 GNGIPLGAVVTTPE-IA-EVLTRRN-Y-FN---T--F--GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       327 g~G~pig~v~~~~~-~~-~~l~~~~-~-~~---t--~--~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~  392 (480)
                      .+|+++|+++++++ ++ +.+.... + +.   +  .  +.+.....+..++++.+..+   +..++..++.+++.+.|+
T Consensus       265 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~  344 (452)
T 2dgk_A          265 LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIA  344 (452)
T ss_dssp             CCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999653 33 3332110 0 00   1  1  11111223333444444333   344555555666666655


Q ss_pred             HhHHhcCceeeE-e----ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc----Cc-CCCEEEEeCCCCCC
Q 011669          393 ALKDKYGIIGDV-R----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG----GF-YGNVFRITPPLCFT  462 (480)
Q Consensus       393 ~l~~~~~~~~~v-~----g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~-~~~~iRi~p~~~~t  462 (480)
                      ++    +.+..+ .    ....++.+.+......    ......+.+.|.++|+.+...    .. ...++||+.....|
T Consensus       345 ~~----~~~~~~~~~~~~~~~~~v~f~~~~~~~~----~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t  416 (452)
T 2dgk_A          345 KL----GPYEFICTGRPDEGIPAVCFKLKDGEDP----GYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFE  416 (452)
T ss_dssp             TT----SSEEEEEECCTTTBSSEEEEEECTTCCC----SCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCC
T ss_pred             hC----CCeEEecCCCCCCCeEEEEEEecCcccc----cCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCC
Confidence            43    323222 2    2445666665321100    011356888999999976432    11 13589999888889


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011669          463 KEDADYLVDVMDYSLSK  479 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~~  479 (480)
                      ++|+|.+++.|++++++
T Consensus       417 ~e~id~li~~l~~~~~~  433 (452)
T 2dgk_A          417 MDFAELLLEDYKASLKY  433 (452)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988753

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.83  E-value=6e-19  Score=182.13  Aligned_cols=299  Identities=15%  Similarity=0.021  Sum_probs=181.7

Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHH-HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCee
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGT-EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH  220 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGs-eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~  220 (480)
                      ...+++++++++++.+.+ ++|++||| .+|..++..++...+++.||+.++.|+. ........            |+.
T Consensus       134 ~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s-~~~~~~~~------------G~~  199 (456)
T 2z67_A          134 LTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS-PIKAVSFV------------GMN  199 (456)
T ss_dssp             HHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH-HHHHHHHT------------TCE
T ss_pred             HHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHH-HHHHHHHc------------CCC
Confidence            446788999999976555 99999999 5677677776653355567777775544 33222222            222


Q ss_pred             EecCCCCc-CCCCCCChHHHHHHHHHHH-HccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc
Q 011669          221 HALNPDPY-RGVFGADGEMYAKDVQDLI-DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA  298 (480)
Q Consensus       221 ~~~~p~~~-~~~~~~d~~~~~~~le~~i-~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t  298 (480)
                      ...++... ...+..|    .++|++++ +.....++.+|++...++++|.+.+    +++|.++|++||+++|+||+|.
T Consensus       200 ~~~v~~~~~~~~~~~d----~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~  271 (456)
T 2z67_A          200 MRLVETVLDGDRVYVP----VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYA  271 (456)
T ss_dssp             EEEECCEEETTEEECC----HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTT
T ss_pred             ceEEEEeccCCCCCcC----HHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcch
Confidence            22221100 0111123    67888888 4211125666766666677888876    9999999999999999999987


Q ss_pred             CccccCCCcccccc-cCCCcceeee--ccccccCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-
Q 011669          299 GFARTGSHFWGFEA-HGVVPDIVTM--AKGIGNGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-  373 (480)
Q Consensus       299 gfgr~G~~~~~~~~-~~~~pDivt~--sK~~g~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-  373 (480)
                      ++.. |........ .+ .+|++++  +|.+++++++|++++ ++++++.+.+...+. ..+++  ..++.+++..+.. 
T Consensus       272 ~~~~-g~~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~-~~~~~--~~~~~aal~~l~~~  346 (456)
T 2z67_A          272 IQNN-YYLEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGR-ASATP--VVNTLVSLLSMGSK  346 (456)
T ss_dssp             TTCH-HHHHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSC-BCSHH--HHHHHHHHHHHHHH
T ss_pred             HHHH-HhhHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCC-CCCCH--HHHHHHHHHHHHHH
Confidence            6532 100000111 12 5777765  698778899999999 577877765432222 22232  2333344443333 


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCc---eee----
Q 011669          374 --DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGV---LVG----  444 (480)
Q Consensus       374 --~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v~----  444 (480)
                        ++..++..++.+++++.|+++....+. ...... .++++.+..+.    .    ...+.+.|.++|+   -+.    
T Consensus       347 ~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-~v~~~~-~~v~~~~~~~~----~----~~~l~~~L~~~gi~~~rv~~~~g  416 (456)
T 2z67_A          347 NYLELVKNQKNSKKLLDELLNDLSKKTGG-KFLDVE-SPIASCISVNS----D----PVEIAAKLYNLRVTGPRGIKKTD  416 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSC-CBCCCC-CSSEEEEECSS----C----HHHHHHHHHHTTEESCEEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCC-EecCCC-CeEEEEEeccc----H----HHHHHHHHHHcCCCcceEEeecC
Confidence              345677788888888888876422221 111222 44455552111    0    3457888888885   232    


Q ss_pred             --cc----CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          445 --KG----GFYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       445 --~~----~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                        .|    ....+++|+++++.+|++|||+++++|++++
T Consensus       417 ~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          417 HFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             HHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             ccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence              01    1113689999998899999999999998765

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.82  E-value=1.7e-20  Score=193.07  Aligned_cols=287  Identities=10%  Similarity=0.006  Sum_probs=181.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g  218 (480)
                      +.....++++++++ ++.+ +.++|+||||+||..+++.+.  .++++|++.+++|++............          
T Consensus        55 ~~~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~--~~gd~Vlv~~~~h~s~~~~~~~~G~~~----------  120 (446)
T 2x3l_A           55 PEEVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS--QKKGDILMARNVHKSVLHALDISQQEG----------  120 (446)
T ss_dssp             CSSHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT--TSSSCEEECTTCCHHHHHHHHHHTCCE----------
T ss_pred             cchHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc--CCCCEEEEecCccHHHHHHHHHcCCeE----------
Confidence            34567788888888 8654 678999999999999999764  367889999999887766544332211          


Q ss_pred             eeEecC--CCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc
Q 011669          219 VHHALN--PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (480)
Q Consensus       219 ~~~~~~--p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  296 (480)
                       ..++.  ...+...+..|    .+++   +    ..++++|++++ ++.+|.+.+    +++|.++|++||+++|+||+
T Consensus       121 -~~v~~~~~~~~~~~~~~d----~~~l---~----~~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea  183 (446)
T 2x3l_A          121 -HFIETHQSPLTNHYNKVN----LSRL---N----NDGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEA  183 (446)
T ss_dssp             -EECEEEECTTTSSEEEEE----C--------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECT
T ss_pred             -EEEeCeeccccCcCCCCC----HHHH---c----CCCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcch
Confidence             11111  00000001111    1233   2    13567777777 555887766    99999999999999999999


Q ss_pred             ccC-ccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHH--hhcCC-CccccCCCcHHHHHHHHHHHHH
Q 011669          297 QAG-FARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAE--VLTRR-NYFNTFGGNPVCTAAGHAVLKV  370 (480)
Q Consensus       297 ~tg-fgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~--~l~~~-~~~~t~~~~~~~~aaa~a~L~~  370 (480)
                      |++ +...+ ..+....  ..+|+++.|  |.++++.++|++++++++++  .+... ....+.+.+...+++..++++.
T Consensus       184 ~~~~~~f~~-~~~~~~~--~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~  260 (446)
T 2x3l_A          184 HGAHFGLQG-FPDSTLN--YQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQF  260 (446)
T ss_dssp             TCTTTTSTT-SCCCGGG--GTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred             hhhhhccCC-CCCChHH--cCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            986 32333 2222222  236777655  99887778899999877643  22211 1223444566666666666766


Q ss_pred             hhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC
Q 011669          371 IQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG  447 (480)
Q Consensus       371 i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  447 (480)
                      +++.   ++.++.+++.+++++.      .+..+.  ...+..+++.+.  .       .....+.+.|.++||.+...+
T Consensus       261 l~~~g~~~~~~~~~~l~~~l~~~------g~~~~~--~~~~~~l~i~~~--~-------~~~~~l~~~L~~~GI~v~~~g  323 (446)
T 2x3l_A          261 YKTYDSTLFFAKRAQLIECLENK------GFEMLQ--VDDPLKLLIKYE--G-------FTGHDIQNWFMNAHIYLELAD  323 (446)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHH------TCEEEE--CSSTTEEEEECT--T-------SCHHHHHHHHHHTTEEESEEC
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHc------CCEECc--CCCCeEEEEEeC--C-------cCHHHHHHHHHHCCCEEEecC
Confidence            6542   2666676666666655      121111  112345566552  1       114568888989999997333


Q ss_pred             cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          448 FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       448 ~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                        .+++|++++...|++++ +++++|++++++
T Consensus       324 --~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~  352 (446)
T 2x3l_A          324 --DYQALAILPLWHHDDTY-LFDSLLRKIEDM  352 (446)
T ss_dssp             --SSCEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred             --CCEEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence              36899999988899999 999999998764

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.82  E-value=4.6e-19  Score=179.56  Aligned_cols=310  Identities=9%  Similarity=-0.020  Sum_probs=188.7

Q ss_pred             CCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCC-CCEEEE-eCCHHHHHHHHHHHHHhhcCCceEEEEc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGN-LKVVFF-TNSGTEANELAIMMARLYTGCNDIISLR  191 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~-~~~v~f-~~sGseA~~~Alk~ar~~~~~~~ii~~~  191 (480)
                      .+|+|.+|+.+...........++  .+...+++++++++++.+ .++|+| ++||++|++.+++.+..  ++  ++...
T Consensus        51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~--~g--v~~v~  126 (398)
T 2fyf_A           51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID--KR--SLHLT  126 (398)
T ss_dssp             CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS--SC--EEEEE
T ss_pred             CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC--CC--eEEEe
Confidence            578999998763111101011121  234678999999999765 357888 99999999999987632  22  33336


Q ss_pred             CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCccee
Q 011669          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (480)
Q Consensus       192 ~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~  271 (480)
                      .++|+..........  .+     ...+..++.++.    +..+     .+    +    ..++++|++...++++|.+.
T Consensus       127 ~~~~~~~~~~~~~~~--~~-----g~~~~~v~~~~g----~~~~-----~~----i----~~~~~~v~~~~~~nptG~~~  182 (398)
T 2fyf_A          127 YGEFSAKFASAVSKN--PF-----VGEPIIITSDPG----SAPE-----PQ----T----DPSVDVIAWAHNETSTGVAV  182 (398)
T ss_dssp             CSHHHHHHHHHHHHC--TT-----SCCCEEEECCTT----CCCC-----CC----C----CTTCSEEEEESEETTTTEEC
T ss_pred             CCHHHHHHHHHHHHh--CC-----CCceEEEecCCC----CCCC-----cc----c----cCCCCEEEEeCcCCCcceec
Confidence            677764322111100  00     001222332211    1111     00    2    23677888888888899887


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccccCccccccccCHHHHHhhcCC-
Q 011669          272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTPEIAEVLTRR-  348 (480)
Q Consensus       272 ~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g~G~pig~v~~~~~~~~~l~~~-  348 (480)
                      + .+.+   .++   +|+++|+||+|+.+...    ...+    .+|+++  ++|.++.+-++|++++++++++.+... 
T Consensus       183 ~-~~~i---~~~---~~~~vivD~a~~~~~~~----~~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~  247 (398)
T 2fyf_A          183 A-VRRP---EGS---DDALVVIDATSGAGGLP----VDIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIA  247 (398)
T ss_dssp             C-CCCC---TTC---C-CEEEEECTTTTTTSC----CCGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHH
T ss_pred             c-hHHh---hhh---cCCeEEEEeccccCCcc----cCcc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhccc
Confidence            5 3333   333   89999999999854321    1111    257765  569999654589999999988766210 


Q ss_pred             ---------C----------cccc-CCCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCceeeE
Q 011669          349 ---------N----------YFNT-FGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGDV  404 (480)
Q Consensus       349 ---------~----------~~~t-~~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  404 (480)
                               .          ...+ ++.|..+++++.++|+.+.++    +..++.+++.+++.+.|+++    +.+...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~  323 (398)
T 2fyf_A          248 ATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----PYTTPF  323 (398)
T ss_dssp             HTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----TTEEES
T ss_pred             ccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----CCceec
Confidence                     0          0122 345566777778888866543    34556666666666666654    222211


Q ss_pred             ---e-ccc-eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc--CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          405 ---R-GRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF--YGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       405 ---~-g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                         . +.+ .++++.+...        .....+.+.|.++||.+.++..  .++++||++...+|++|+++++++|++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l  395 (398)
T 2fyf_A          324 VTDPGLRSQVVGTIDFVDD--------VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVV  395 (398)
T ss_dssp             CCSGGGBCSSEEEEEECTT--------SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             cCChhhcCCcEEEEECCCC--------CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence               1 123 3778877321        1146788889999999987521  24789999988889999999999999998


Q ss_pred             hhC
Q 011669          478 SKM  480 (480)
Q Consensus       478 ~~~  480 (480)
                      +++
T Consensus       396 ~~~  398 (398)
T 2fyf_A          396 ERL  398 (398)
T ss_dssp             HTC
T ss_pred             HhC
Confidence            764

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.82  E-value=5.7e-19  Score=179.71  Aligned_cols=298  Identities=13%  Similarity=0.057  Sum_probs=185.3

Q ss_pred             cccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcc
Q 011669          132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK  211 (480)
Q Consensus       132 ~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  211 (480)
                      .|....+.++...+++++|+++++.  +.+++++||++|+..+++...  .++++||+..+.|++.........      
T Consensus        73 ~~~y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssGt~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~l------  142 (415)
T 2fq6_A           73 ELFYGRRGTLTHFSLQQAMCELEGG--AGCVLFPCGAAAVANSILAFI--EQGDHVLMTNTAYEPSQDFCSKIL------  142 (415)
T ss_dssp             SCCCTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC--CTTCEEEEETTSCHHHHHHHHHTG------
T ss_pred             CccccCCCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHHh--CCCCEEEEeCCCchHHHHHHHHHH------
Confidence            4555677889999999999999864  456778999999999998543  256889999999987442221110      


Q ss_pred             ccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH--hCC
Q 011669          212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK--AGG  289 (480)
Q Consensus       212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~--~gi  289 (480)
                         ...|+....++.       +|    .++++++++    +++++|++|.++|++|.+.+    +++|.++|++  ||+
T Consensus       143 ---~~~G~~v~~v~~-------~d----~~~le~ai~----~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~  200 (415)
T 2fq6_A          143 ---SKLGVTTSWFDP-------LI----GADIVKHLQ----PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDA  200 (415)
T ss_dssp             ---GGGTCEEEEECT-------TC----GGGGGGGCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTC
T ss_pred             ---HHcCcEEEEECC-------CC----HHHHHHhhc----cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCC
Confidence               001333322221       12    356666664    36899999999999999886    9999999999  999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~  365 (480)
                      ++|+||+|... ... ..  .   +...|++  +++|.+++ | ...|++++++++++.+...........+|..+.+++
T Consensus       201 ~livD~a~a~~-~~~-~p--~---~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~  273 (415)
T 2fq6_A          201 IIMIDNTWAAG-VLF-KA--L---DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITS  273 (415)
T ss_dssp             EEEEECTTTTT-TSS-CG--G---GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             EEEEECCCccc-ccC-Cc--c---ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999632 112 11  1   2235766  67899995 4 346899998887776654221111233566666565


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhH--Hh--cCcee----------eEeccceeEEEEEecCCCcCCCCHHHHHH
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALK--DK--YGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLY  431 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~--~~--~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~  431 (480)
                      ..++.+.  ...++..++...+.+.|++..  .+  ++.+.          ..++.|.+++|.+....     .......
T Consensus       274 ~~l~~l~--~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~-----~~~~~~~  346 (415)
T 2fq6_A          274 RGLRTLG--VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEELAN  346 (415)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHHHH
T ss_pred             hhhhHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC-----CHHHHHH
Confidence            5665432  223334445555555555431  00  11110          01246778888883210     0123444


Q ss_pred             HHHHHHHcCceeecc-----------------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          432 IMDKMKEMGVLVGKG-----------------------GFYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       432 ~~~~l~~~Gv~v~~~-----------------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      +.+.|.-.++.+..|                       +..++.|||++.+..++++|+.+.++|++
T Consensus       347 ~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          347 YLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             HHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             HHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence            544443223222211                       11247899999999999999888888864

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.81  E-value=4.8e-20  Score=188.70  Aligned_cols=323  Identities=13%  Similarity=0.002  Sum_probs=194.5

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHh-ccccccccCCh--H---HHHHHHHHHHhCC------CCCCEEEEe
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQHSTVLYLNH--A---IADFAEALASKMP------GNLKVVFFT  164 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~-~~~~~~~~~~~--~---~~~l~e~L~~~~~------~~~~~v~f~  164 (480)
                      ..+..+||..|....  + .++.+.+++.+.+.. ..+. ..|...  .   ..+|++.|++++.      .+.++|++|
T Consensus        54 ~~~~~i~l~~g~~~~--~-~~~~v~~a~~~~l~~~~~~~-~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t  129 (427)
T 2hox_A           54 IQGCSADVASGDGLF--L-EEYWKQHKEASAVLVSPWHR-MSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFG  129 (427)
T ss_dssp             CTTCCEECCSCCCGG--G-HHHHTTSHHHHCEEECTTTT-CSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEE
T ss_pred             CCCceEEecCcCCCC--C-CCHHHHHhHHhhhhcCCccc-ccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEe
Confidence            345678887776643  2 345677777765532 1111 113222  2   4666666666652      346789999


Q ss_pred             CCHHHHHHHHHHHHHh------hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHH
Q 011669          165 NSGTEANELAIMMARL------YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEM  238 (480)
Q Consensus       165 ~sGseA~~~Alk~ar~------~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~  238 (480)
                      +|+++|+..+++....      ..+++.|++.+++|.++.......... ..       +             |..|   
T Consensus       130 ~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~-~~-------~-------------~~~d---  185 (427)
T 2hox_A          130 VGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKK-GY-------V-------------WAGN---  185 (427)
T ss_dssp             SHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBT-TE-------E-------------EEEE---
T ss_pred             CCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCe-ee-------e-------------ecCC---
Confidence            9999999999987610      235688999999998766554433221 10       0             0011   


Q ss_pred             HHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcc
Q 011669          239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD  318 (480)
Q Consensus       239 ~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pD  318 (480)
                       .++|++.++    .++++|++...+|++|.+..  +.+       +  ++..|.||.+-+   ......... .+...-
T Consensus       186 -~~~l~~~~~----~~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~---~~~s~~~~~-~~~~i~  245 (427)
T 2hox_A          186 -AANYVNVSN----PEQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW---PHYTPIKYK-ADEDIL  245 (427)
T ss_dssp             -GGGGTTCSC----GGGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS---TTTSCCCSC-BCCSEE
T ss_pred             -HHHHHHhhc----CCceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC---CCCCccccC-CCceEE
Confidence             234544443    24566666666777887764  433       2  566788887632   110111121 233333


Q ss_pred             eeeeccccc-cCccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHH
Q 011669          319 IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---------DKLQNNAHVVGSYL  387 (480)
Q Consensus       319 ivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~---------~~~~~~~~~~~~~l  387 (480)
                      +.+|||.+| .|+|+||++++ +++++.+.......+++.+++++.++.++|+...+         +++.++.++..+..
T Consensus       246 ~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (427)
T 2hox_A          246 LFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRER  325 (427)
T ss_dssp             EEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHH
T ss_pred             EEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHH
Confidence            447899998 79999999994 89988887654445677889999888888875321         12222222222223


Q ss_pred             HHHHHHhHHhcCcee---------------eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC--
Q 011669          388 KERLTALKDKYGIIG---------------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY--  449 (480)
Q Consensus       388 ~~~L~~l~~~~~~~~---------------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--  449 (480)
                      ++.|.+..++++.+.               .....|+++|+++..+          ...+++.| .++||.+.+|..+  
T Consensus       326 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------~~~~~~~ll~~~gI~v~pg~~f~~  395 (427)
T 2hox_A          326 WVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------EDKDCYQTFQNGRINTQNGVGFEA  395 (427)
T ss_dssp             HHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----------GGCSHHHHHHHTTEECEEGGGGTS
T ss_pred             HHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc----------HHHHHHHHHHHCCEEEcCCCccCC
Confidence            333333333332221               1222377888888421          12355555 4789999997544  


Q ss_pred             -CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          450 -GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       450 -~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       .+++||++.  .+++++++++++|.+++++
T Consensus       396 ~~~~~Ris~~--~~~e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          396 SSRYVRLSLI--KTQDDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             CTTEEEEECS--SCHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence             468999954  5899999999999998864

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.81  E-value=1.3e-18  Score=177.67  Aligned_cols=290  Identities=15%  Similarity=0.079  Sum_probs=177.3

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +....+.++...+|+++|+++++.  +.+++++||++|+..+++.+.  .+++.||+.++.|++.........       
T Consensus        74 ~~y~r~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~al~--~~Gd~Vi~~~~~y~~~~~~~~~~~-------  142 (430)
T 3ri6_A           74 HVYSRSSNPTVEDLEQRLKNLTGA--LGVLALGSGMAAISTAILTLA--RAGDSVVTTDRLFGHTLSLFQKTL-------  142 (430)
T ss_dssp             ------CCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHTHH-------
T ss_pred             ccccCCCCHHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCCchhHHHHHHHHH-------
Confidence            344567789999999999999864  457888999999999998763  367899999999987554221010       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                        ...|+....++.       +|    .++++++++    +++++|++|+++|++|.+.+    +++|.++|++||+++|
T Consensus       143 --~~~G~~~~~v~~-------~d----~~~l~~ai~----~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~li  201 (430)
T 3ri6_A          143 --PSFGIEVRFVDV-------MD----SLAVEHACD----ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLV  201 (430)
T ss_dssp             --HHTTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEE
T ss_pred             --HHcCCEEEEeCC-------CC----HHHHHHhhC----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEE
Confidence              001333333322       12    577887774    37899999999999998876    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeecccccc-Ccccccccc---CHHH------------------HHhhcCC-C
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPLGAVVT---TPEI------------------AEVLTRR-N  349 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~-G~pig~v~~---~~~~------------------~~~l~~~-~  349 (480)
                      +||+|+.    + .++....+|....+.+++|.+++ |..+|.++.   +..+                  ++.+... .
T Consensus       202 vD~a~~~----~-~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~  276 (430)
T 3ri6_A          202 VDTTMTP----P-YLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVF  276 (430)
T ss_dssp             EECTTSC----T-TTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHH
T ss_pred             EECCCcc----c-ccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHH
Confidence            9999962    2 12222334554455578899986 555554443   2111                  1111110 0


Q ss_pred             ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe-----------------ccce-eE
Q 011669          350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-----------------GRGF-LL  411 (480)
Q Consensus       350 ~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-----------------g~g~-~~  411 (480)
                      .......+|+.+..++..++.+.  ...++..++..++.+.|+    ++|.+..+.                 |.|. ++
T Consensus       277 ~~~g~~~~~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~----~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~l  350 (430)
T 3ri6_A          277 QNLGPSLSPHNAYLQSLGLETMA--LRIERSCQNAQELAHWLL----SIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSIL  350 (430)
T ss_dssp             HHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHT----TCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred             HhcCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHh----CCCCccEEECCCCCCCccHHHHHHhCCCCceEE
Confidence            01112235666666665555432  223344444445554443    445554443                 3466 99


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------------------------cCCCEEEEeCCCCCCHHHH
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------------------------FYGNVFRITPPLCFTKEDA  466 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~~~i  466 (480)
                      +|++.        ......++.+.|+-.++.+..|+                         ...+.|||+..    -|++
T Consensus       351 sf~l~--------~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG----~E~~  418 (430)
T 3ri6_A          351 TFELE--------SKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG----IEEI  418 (430)
T ss_dssp             EEECS--------SHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC----SSCH
T ss_pred             EEEEC--------CHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec----cCCH
Confidence            99983        22345666666655554444332                         23468999854    4566


Q ss_pred             HHHHHHHHHHH
Q 011669          467 DYLVDVMDYSL  477 (480)
Q Consensus       467 d~~l~~l~~~l  477 (480)
                      +.+++.|+++|
T Consensus       419 ~dl~~dl~~al  429 (430)
T 3ri6_A          419 EDLKEDILQAL  429 (430)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            77777777766

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.80  E-value=1.9e-18  Score=179.54  Aligned_cols=336  Identities=13%  Similarity=0.086  Sum_probs=195.9

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhcc---cccc-ccC-ChH----HHHHHHHHHHhCCCCCC---EEEEeCCHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTV-LYL-NHA----IADFAEALASKMPGNLK---VVFFTNSGT  168 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~---~~~~-~~~-~~~----~~~l~e~L~~~~~~~~~---~v~f~~sGs  168 (480)
                      .|.+.++..     ..+|.|.+|+.+.+....   +... .|. .+.    ...++++++++++.+.+   ..++.+||+
T Consensus        46 ~i~L~a~e~-----~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs  120 (483)
T 1rv3_A           46 GLELIASEN-----FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS  120 (483)
T ss_dssp             SEECCTTCC-----CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred             CeEEEcCCC-----CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH
Confidence            355555432     457999999988776421   1111 111 222    34555888999876543   224566777


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC--eeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG--VHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g--~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      +||.++++...  .++++|++.+..|.|.........     +......|  +..++++... ..+..|    .++|+++
T Consensus       121 ~an~~~~~all--~pGD~Vl~~~~~~~~~~~~~~~~~-----~~~v~~~G~~~~~v~~~~~~-~~~~iD----~d~le~~  188 (483)
T 1rv3_A          121 PANFAVYTALV--EPHGRIMGLDLPDGGHLTHGFMTD-----KKKISATSIFFESMAYKVNP-DTGYID----YDRLEEN  188 (483)
T ss_dssp             HHHHHHHHHHT--CTTCEEEEECGGGTCCGGGCCBCS-----SCBCSHHHHHSEEEEECBCT-TTCSBC----HHHHHHH
T ss_pred             HHHHHHHHHhc--CCCCEEEEecCccCcCcchhhhhc-----ccCcccccceEEEEECcccc-CCCcCC----HHHHHHH
Confidence            99998887653  377899999888765432211110     00000011  2333332110 112234    6788888


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceee--ec
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVT--MA  323 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt--~s  323 (480)
                      ++.   .++++|++ ...+.+ .+.+    +++|+++|++||+++|+||+|. |+...|...+.+.    ..|+++  ++
T Consensus       189 i~~---~~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~  255 (483)
T 1rv3_A          189 ARL---FHPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTH  255 (483)
T ss_dssp             HHH---HCCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESS
T ss_pred             Hhh---cCCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCc
Confidence            863   25678888 555544 4444    9999999999999999999986 3322231111111    357765  56


Q ss_pred             cccccCccccccccCHH---------------HHHhhcCCCccccCC-CcHHHHHHHHHHHHHhhh---hHHHHHHHHHH
Q 011669          324 KGIGNGIPLGAVVTTPE---------------IAEVLTRRNYFNTFG-GNPVCTAAGHAVLKVIQK---DKLQNNAHVVG  384 (480)
Q Consensus       324 K~~g~G~pig~v~~~~~---------------~~~~l~~~~~~~t~~-~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~  384 (480)
                      |++ +|+|.|+++++++               +.+.+.........+ .+...+++..++++.+.+   +++.+++.++.
T Consensus       256 K~l-~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~  334 (483)
T 1rv3_A          256 KTL-RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANC  334 (483)
T ss_dssp             GGG-CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             ccC-CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence            998 4668899998874               333232111111122 234444555566766543   34566677777


Q ss_pred             HHHHHHHHHhHHhcCceeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceee----ccC---cCCCEEEEe
Q 011669          385 SYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVG----KGG---FYGNVFRIT  456 (480)
Q Consensus       385 ~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~---~~~~~iRi~  456 (480)
                      +++.+.|.++  .+..+.  .+. ..+.++++....       .....+.+.|.+.||.+.    |+.   ...+.+||+
T Consensus       335 ~~l~~~L~~~--g~~~~~--~~~~~~~~~v~~~~~g-------~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis  403 (483)
T 1rv3_A          335 RALSAALVEL--GYKIVT--GGSDNHLILVDLRSKG-------TDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG  403 (483)
T ss_dssp             HHHHHHHHHT--TCEEGG--GSCSSSEEEEEGGGGT-------CCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEE
T ss_pred             HHHHHHHHhc--CCEecc--CCCCCceEEEeccCCC-------CCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEee
Confidence            7777777664  222111  111 235566653211       013456777888999998    653   124689999


Q ss_pred             CCCCCC----HHHHHHHHHHHHHHHh
Q 011669          457 PPLCFT----KEDADYLVDVMDYSLS  478 (480)
Q Consensus       457 p~~~~t----~~~id~~l~~l~~~l~  478 (480)
                      ++..+|    ++|+++++++|+++++
T Consensus       404 ~~~~~t~g~~~edi~~~~~~l~~~l~  429 (483)
T 1rv3_A          404 TPALTSRGLLEKDFQKVAHFIHRGIE  429 (483)
T ss_dssp             CHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCcccCCCCHHHHHHHHHHHHHHHH
Confidence            886666    9999999999998875

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.79  E-value=3.2e-17  Score=171.09  Aligned_cols=327  Identities=16%  Similarity=0.071  Sum_probs=194.0

Q ss_pred             CCCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCC--CC---EEEEeCCHHHHHHHHHHHHHhhc-----
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGN--LK---VVFFTNSGTEANELAIMMARLYT-----  182 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~--~~---~v~f~~sGseA~~~Alk~ar~~~-----  182 (480)
                      ..+|.+.+++.+.+.........++  .....+++++|+++++.+  .+   ...+++||+|||..++..++...     
T Consensus        67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~  146 (502)
T 3hbx_A           67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK  146 (502)
T ss_dssp             CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence            4579999999887765322111111  233446777888888654  22   33569999999999998775420     


Q ss_pred             --C----CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          183 --G----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       183 --~----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                        |    +..|++.+++|..+...+ ...+.          .+..++...   ..+.-|    .++++++++    ++++
T Consensus       147 ~~G~~~~~~~vi~~~~~h~s~~~~~-~~~G~----------~~~~v~~~~---~~~~~d----~~~l~~~i~----~~t~  204 (502)
T 3hbx_A          147 AEGKPVDKPNIVTGANVQVCWEKFA-RYFEV----------ELKEVKLSE---GYYVMD----PQQAVDMVD----ENTI  204 (502)
T ss_dssp             HTTCCCSCCEEEEETTCCHHHHHHH-HHTTC----------EEEEECCBT---TBCSCC----HHHHHHHCC----TTEE
T ss_pred             hcCCCCCCcEEEEcCCchHHHHHHH-HHcCc----------eeEEEecCC---CcCcCC----HHHHHHHHh----hCCE
Confidence              2    126777776654433222 22111          122233211   012223    677887775    3577


Q ss_pred             EEEEcccCCCCcceeCCCChHHHHHHHHHHh------CCEEEEcccccCccc---cCCCcccccccCCCcceeee--ccc
Q 011669          257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKA------GGLCIADEVQAGFAR---TGSHFWGFEAHGVVPDIVTM--AKG  325 (480)
Q Consensus       257 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~tgfgr---~G~~~~~~~~~~~~pDivt~--sK~  325 (480)
                      +|++...++++|.+.+    +++|.++|+++      |+++++|++|.++..   .+...+.+..  ...|++++  .|.
T Consensus       205 ~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~  278 (502)
T 3hbx_A          205 CVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKY  278 (502)
T ss_dssp             EEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTT
T ss_pred             EEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccc
Confidence            7877777777888876    99999999999      999999999987631   2211111111  13566644  487


Q ss_pred             cccCccccccccC-HHHH-HhhcCC-Cc-c-----cc--CCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Q 011669          326 IGNGIPLGAVVTT-PEIA-EVLTRR-NY-F-----NT--FGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL  391 (480)
Q Consensus       326 ~g~G~pig~v~~~-~~~~-~~l~~~-~~-~-----~t--~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L  391 (480)
                      +.++.++|+++.+ ++.+ +.+... .+ +     .+  ++.+....++..++|+.+..+   ...++..++.+++.+.|
T Consensus       279 l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L  358 (502)
T 3hbx_A          279 GLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGL  358 (502)
T ss_dssp             TCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777889988775 3433 222110 00 0     11  222222344444555554443   34455556666666666


Q ss_pred             HHhHHhcCceeeEe--ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeCCCCCCHH
Q 011669          392 TALKDKYGIIGDVR--GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITPPLCFTKE  464 (480)
Q Consensus       392 ~~l~~~~~~~~~v~--g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~~  464 (480)
                      +++    +.+..+.  ....++.+.+.....      .....+.+.|.++|+++.....     ...++||+....+|++
T Consensus       359 ~~~----~~~~~~~~~~~~~~v~f~~~~~~~------~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~e  428 (502)
T 3hbx_A          359 EKT----ERFNIVSKDEGVPLVAFSLKDSSC------HTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRT  428 (502)
T ss_dssp             HTT----TCEEECSCSSSSSEEEEEESSCSS------CCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHH
T ss_pred             HhC----CCEEEEeCCCCceEEEEEecCCCc------CCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHH
Confidence            654    3232222  234566666633210      1134788899999999753211     1257999999899999


Q ss_pred             HHHHHHHHHHHHHhh
Q 011669          465 DADYLVDVMDYSLSK  479 (480)
Q Consensus       465 ~id~~l~~l~~~l~~  479 (480)
                      +++.+++.|++++++
T Consensus       429 did~li~~L~~~l~~  443 (502)
T 3hbx_A          429 LAERLVIDIEKVMRE  443 (502)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.78  E-value=1.1e-17  Score=170.83  Aligned_cols=294  Identities=11%  Similarity=0.015  Sum_probs=184.2

Q ss_pred             CCCHHHHHHHHHHHHhccc----cccccCChHHHHHHHHHHHhCCCCCCEEEE---eCCHHHHHHHHHHHHHhhcCCceE
Q 011669          115 HCHPYVVDSIVNQIKRIQH----STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDI  187 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~----~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f---~~sGseA~~~Alk~ar~~~~~~~i  187 (480)
                      +++++|++|+.++.....+    ....|......++++++++.++.+  ...+   ++||++|++.+++...  .+++.|
T Consensus        35 ~n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~--~~~~~i~~~sGt~Ai~~al~al~--~~Gd~V  110 (431)
T 3ht4_A           35 SNQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAE--AGLVRPQIISGTHAISTALFGIL--RPGDEL  110 (431)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCS--EECCBTTSCSHHHHHHHHHHTTC--CTTCEE
T ss_pred             HHHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCC--cccccceeeCHHHHHHHHHHHhC--CCCCEE
Confidence            3568888888775322111    112455678889999999999653  3333   5699999999997543  367788


Q ss_pred             EEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc-cCCC
Q 011669          188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES-IQGV  266 (480)
Q Consensus       188 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~  266 (480)
                      ++.++..|+.....+.+++.  ++......|+....++....  +..|    .++++++++    +++++|++++ .+++
T Consensus       111 l~~~~~~y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~--~~~d----~e~l~~~l~----~~tk~V~i~~sp~np  178 (431)
T 3ht4_A          111 LYITGKPYDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEG--GLVD----FEAVAAAIH----SNTKMIGIQRSKGYA  178 (431)
T ss_dssp             EECSSSCCTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTT--SSBC----HHHHHHHCC----TTEEEEEEECSCTTS
T ss_pred             EEeCCCCchhHHHHHhhccc--ccchHHHcCCEEEEeCCCCC--CCcC----HHHHHhhcC----CCCeEEEEECCCCCC
Confidence            88884555666655555442  22222223555444443211  2234    677888775    3789999995 5555


Q ss_pred             CcceeCCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC--ccccccccCHHHH
Q 011669          267 GGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG--IPLGAVVTTPEIA  342 (480)
Q Consensus       267 ~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G--~pig~v~~~~~~~  342 (480)
                      +|.. .+...+++|.++|++  ||+++|+||+|..+.... ...   ..+....+.+++|.+++|  .+.|+++++++++
T Consensus       179 ~~~~-~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~-~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li  253 (431)
T 3ht4_A          179 TRPS-FTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ-EPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYV  253 (431)
T ss_dssp             SSCC-CCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC-CGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHH
T ss_pred             CCCc-CCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC-Ccc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHH
Confidence            5543 466779999999999  999999999998775443 221   224444445789999974  5678999999988


Q ss_pred             HhhcCC----CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhc-CceeeEeccceeEEEEEec
Q 011669          343 EVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVT  417 (480)
Q Consensus       343 ~~l~~~----~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~v~g~g~~~~i~~~~  417 (480)
                      +.+...    ..+.+.+.++..+.+++..++.+  +...++..+...++.+.|+++..+. |. ...++.++++.+.+. 
T Consensus       254 ~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~-  329 (431)
T 3ht4_A          254 EACAYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFD-  329 (431)
T ss_dssp             HHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECC-
T ss_pred             HHHHHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeC-
Confidence            877541    12222333222233344555433  3456667777788888887763211 11 223455667788773 


Q ss_pred             CCCcCCCCHHHHHHHHHHHHHcC
Q 011669          418 DRQLKTPAKAETLYIMDKMKEMG  440 (480)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~l~~~G  440 (480)
                             +......+++.|.+..
T Consensus       330 -------~~~~~~~~~~~l~~~~  345 (431)
T 3ht4_A          330 -------DKDRMIAFCQAIQYAS  345 (431)
T ss_dssp             -------CHHHHHHHHHHHHHTS
T ss_pred             -------CHHHHHHHHHHHHhcC
Confidence                   2345677888888763

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.77  E-value=2.1e-16  Score=165.24  Aligned_cols=335  Identities=13%  Similarity=0.028  Sum_probs=188.6

Q ss_pred             CHHH-HHHHHHHHHhccccccccCChHH----HHHHHHHHHhCCCC--CCEEEEeCCHHHHHHHHHHHHHhhc-------
Q 011669          117 HPYV-VDSIVNQIKRIQHSTVLYLNHAI----ADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYT-------  182 (480)
Q Consensus       117 ~p~v-~~A~~~~~~~~~~~~~~~~~~~~----~~l~e~L~~~~~~~--~~~v~f~~sGseA~~~Alk~ar~~~-------  182 (480)
                      +|.+ .+++.+.+.....  .....+..    .+++++++++++.+  .+.++|++|||+||..|+..++...       
T Consensus       108 ~~~~~~e~l~~~~~~~~~--~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~  185 (511)
T 3vp6_A          108 IIGLAGEWLTSTANTNMF--TYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTK  185 (511)
T ss_dssp             HHHHHHHHHHHHHCCCSS--CTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred             HHHHHHHHHHHHhccCCC--CcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhc
Confidence            3444 4555555544321  11123433    45556667776544  3589999999999999999887631       


Q ss_pred             -----CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCce
Q 011669          183 -----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHV  255 (480)
Q Consensus       183 -----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~  255 (480)
                           ++..|++.+..|+. ...+....+...       ..+..++...  .  +.-|    .++|++.|+..  ....+
T Consensus       186 G~~~~~~~~v~~s~~~H~s-~~~~~~~~g~g~-------~~~~~v~~d~--~--~~~d----~~~Le~~i~~~~~~g~~~  249 (511)
T 3vp6_A          186 GMAAVPKLVLFTSEQSHYS-IKKAGAALGFGT-------DNVILIKCNE--R--GKII----PADFEAKILEAKQKGYVP  249 (511)
T ss_dssp             CGGGSCCEEEEEETTSCTH-HHHHHHHTTSCG-------GGEEEECBCT--T--SCBC----HHHHHHHHHHHHHTTCEE
T ss_pred             CcccCCCeEEEECCCchHH-HHHHHHHcCCCC-------CcEEEeecCC--C--CccC----HHHHHHHHHHHHhcCCCc
Confidence                 23345555554433 333333322110       0122233221  1  1123    67888888632  12237


Q ss_pred             EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeee--ccccccCccc
Q 011669          256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPL  332 (480)
Q Consensus       256 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~--sK~~g~G~pi  332 (480)
                      ++|++...++++|.+.+    +++|.++|++||+++++|++|.+..... .-+.....|+ ..|++++  .|.+++.+.+
T Consensus       250 ~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~-~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~  324 (511)
T 3vp6_A          250 FYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMS-RKHRHKLNGIERANSVTWNPHKMMGVLLQC  324 (511)
T ss_dssp             EEEEEEBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCC
T ss_pred             EEEEEecCCCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhC-hhhhhhccCCccCCEEEECcccccCCCcCe
Confidence            88888888888998866    9999999999999999999998643322 1111122233 4577754  5999877778


Q ss_pred             cccccCH-HHHHhh-cCCC-cc---------------ccC-CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH
Q 011669          333 GAVVTTP-EIAEVL-TRRN-YF---------------NTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKER  390 (480)
Q Consensus       333 g~v~~~~-~~~~~l-~~~~-~~---------------~t~-~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~  390 (480)
                      |+++.++ ++.... .... +.               .++ .+.+....+..++|+.+..   +++.++..++.+++++.
T Consensus       325 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~  404 (511)
T 3vp6_A          325 SAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAK  404 (511)
T ss_dssp             EEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            8888765 344432 1110 00               000 1112223334444544433   34556666677777777


Q ss_pred             HHHhHHhcCceeeE---eccceeEEEEEecCCCcCCC-CH-------HHHHHHHHHHHHcCceeecc---CcCCCEEEEe
Q 011669          391 LTALKDKYGIIGDV---RGRGFLLGVEFVTDRQLKTP-AK-------AETLYIMDKMKEMGVLVGKG---GFYGNVFRIT  456 (480)
Q Consensus       391 L~~l~~~~~~~~~v---~g~g~~~~i~~~~~~~~~~~-~~-------~~~~~~~~~l~~~Gv~v~~~---~~~~~~iRi~  456 (480)
                      |+++    +.+..+   .....++.+.+........+ ..       .....+.+.|.++|+++...   +...+++||+
T Consensus       405 L~~~----pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~  480 (511)
T 3vp6_A          405 IKNR----EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMV  480 (511)
T ss_dssp             HHSC----TTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEC
T ss_pred             HhcC----CCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEE
Confidence            7653    322222   13344455544322110000 10       12346888899999765431   1112479999


Q ss_pred             C-CCCCCHHHHHHHHHHHHHHHh
Q 011669          457 P-PLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       457 p-~~~~t~~~id~~l~~l~~~l~  478 (480)
                      + ...++++||+.++++|++.-+
T Consensus       481 ~~~~~~t~~di~~ll~~i~~~~~  503 (511)
T 3vp6_A          481 ISNPAATQSDIDFLIEEIERLGQ  503 (511)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             ecCCCCCHHHHHHHHHHHHHHHH
Confidence            8 577899999999999998754

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.76  E-value=8e-17  Score=161.99  Aligned_cols=314  Identities=12%  Similarity=0.013  Sum_probs=194.5

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHH-HHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEAL-ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L-~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y  194 (480)
                      ..|++.+++.+.++..+..   ...+...+|++++ +++++ ..+.+++++||++|+..+++.+. ..+++.||+..+.|
T Consensus        14 ~~~~i~~a~~~~~~~~~~~---~~~~~~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~-~~~Gd~Vi~~~~~~   88 (377)
T 3ju7_A           14 PVIEYLDELKEIDASHIYT---NYGPINQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKK-RKKGKYALMPSFTF   88 (377)
T ss_dssp             CGGGGHHHHHHHHHHTCCS---SSCHHHHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHS-CTTCCEEEEESSSC
T ss_pred             CcHHHHHHHHHHHHcCCcc---cCCHHHHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCCc
Confidence            3578899999988765321   1257788999999 99986 24678999999999999998652 23678999999999


Q ss_pred             ccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCC
Q 011669          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (480)
Q Consensus       195 hG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  274 (480)
                      .+........             |...+.++.. ...|..|    .+++++++... ..++++|+.  + +.+|...+  
T Consensus        89 ~~~~~~~~~~-------------G~~~~~v~~~-~~~~~~d----~~~l~~~i~~~-~~~tk~v~~--~-~~~G~~~~--  144 (377)
T 3ju7_A           89 PATPLAAIWC-------------GLEPYFIDIS-IDDWYMD----KTVLWDKIEEL-KEEVAIVVP--Y-ATFGSWMN--  144 (377)
T ss_dssp             THHHHHHHHT-------------TCEEEEECBC-TTTCSBC----HHHHHHHHHHH-GGGEEEECC--B-CGGGBCCC--
T ss_pred             HHHHHHHHHc-------------CCEEEEEecC-CccCCcC----HHHHHHHHhcC-CCCceEEEE--E-CCCCCccC--
Confidence            7754433222             2222222211 0123234    67888877321 013777773  3 34566554  


Q ss_pred             ChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-CCCcceeeec----cccccCccccccccC-HHHHHhhcCC
Q 011669          275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRR  348 (480)
Q Consensus       275 ~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~  348 (480)
                        +++|.++|+ ||+++|+|++|+ +|..    +..... +...|+.++|    |.+++| ..|+++.+ +++.+.+...
T Consensus       145 --~~~i~~la~-~~~~vi~D~a~a-~g~~----~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~  215 (377)
T 3ju7_A          145 --LEEYEELEK-KGVPVVVDAAPG-FGLM----NGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRM  215 (377)
T ss_dssp             --CHHHHHHHH-TTCCBEEECTTC-TTCE----ETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHH
T ss_pred             --HHHHHHHHh-cCCEEEEECCCc-cCCe----ECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHH
Confidence              899999999 999999999997 4321    111122 2224555544    999875 55666654 6666655432


Q ss_pred             Cc------------cccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHh-cCceeeEecc---ceeEE
Q 011669          349 NY------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK-YGIIGDVRGR---GFLLG  412 (480)
Q Consensus       349 ~~------------~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~-~~~~~~v~g~---g~~~~  412 (480)
                      ..            +..+..+++.++.+++.|+.+  +...++.+++.+++.+.|+++..- .+.. ...+.   -.++.
T Consensus       216 ~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~  292 (377)
T 3ju7_A          216 GNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQ-LQKTEAVIQQFMP  292 (377)
T ss_dssp             TBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCB-CCCCSCBCCSSEE
T ss_pred             HhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCcccccc-CCCCCcceEEEEE
Confidence            11            234556678877777777643  445666777777777777765210 1111 10111   11223


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC--c---------------------CCCEEEEeCCCCCCHHHHHHH
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG--F---------------------YGNVFRITPPLCFTKEDADYL  469 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~---------------------~~~~iRi~p~~~~t~~~id~~  469 (480)
                      +.+.. .       ...+.+.+.|.++||.+....  .                     ..+.||+......|++|++++
T Consensus       293 ~~~~~-~-------~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v  364 (377)
T 3ju7_A          293 ILCPE-E-------VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQI  364 (377)
T ss_dssp             EECCT-T-------SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred             EEeCC-h-------hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHH
Confidence            33211 0       114678899999999886532  0                     024688888888999999999


Q ss_pred             HHHHHHHHh
Q 011669          470 VDVMDYSLS  478 (480)
Q Consensus       470 l~~l~~~l~  478 (480)
                      ++.|.+++.
T Consensus       365 ~~~l~~~~~  373 (377)
T 3ju7_A          365 VICLGQKVV  373 (377)
T ss_dssp             HHHHTC---
T ss_pred             HHHHHHHHh
Confidence            999987764

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.75  E-value=5.3e-16  Score=161.08  Aligned_cols=363  Identities=12%  Similarity=0.025  Sum_probs=199.6

Q ss_pred             CCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHH-HHHHHHHHHHhcccc
Q 011669           56 DGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPY-VVDSIVNQIKRIQHS  134 (480)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~-v~~A~~~~~~~~~~~  134 (480)
                      .+.+.+++++...+.+.++..+ +.                 ..+|+.++.+      |-..|. +.+.+...+....+ 
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~p~~~~~~~~------~~~~~~~~~~~~~~~~n~~~~-  108 (481)
T 4e1o_A           54 DPDSWDSIFGDIERIIMPGVVH-WQ-----------------SPHMHAYYPA------LTSWPSLLGDMLADAINCLGF-  108 (481)
T ss_dssp             SCCCHHHHHHHHHHHTGGGCCC-TT-----------------STTBCSSSCC------CCCHHHHHHHHHHHHHCCCCS-
T ss_pred             CCCCHHHHHHHHHHHHhcCCCC-CC-----------------CCCeeEeCCC------CCCHHHHHHHHHHHHhCcccC-
Confidence            3446778888877776554322 11                 1223333321      122344 44455555544221 


Q ss_pred             ccccCChHH----HHHHHHHHHhCCCCC----------CEEEEeCCHHHHHHHHHHHHHhhc-----------------C
Q 011669          135 TVLYLNHAI----ADFAEALASKMPGNL----------KVVFFTNSGTEANELAIMMARLYT-----------------G  183 (480)
Q Consensus       135 ~~~~~~~~~----~~l~e~L~~~~~~~~----------~~v~f~~sGseA~~~Alk~ar~~~-----------------~  183 (480)
                       .....+..    .++.+++++.++.+.          ...+|++|||+||..|+.++|...                 +
T Consensus       109 -~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~  187 (481)
T 4e1o_A          109 -TWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNA  187 (481)
T ss_dssp             -STTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHT
T ss_pred             -CcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccC
Confidence             11123444    445556666654332          257899999999999999987641                 2


Q ss_pred             CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEc
Q 011669          184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSE  261 (480)
Q Consensus       184 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~e  261 (480)
                      +..|++.+.++ .....+....+            .....+|...  .+.-|    .++|+++|+..  ....+.+|++.
T Consensus       188 ~~~v~~s~~~H-~s~~~~~~~~g------------~~~~~v~~~~--~~~~d----~~~Le~~i~~~~~~g~~~~~vv~~  248 (481)
T 4e1o_A          188 RLVAYASDQAH-SSVEKAGLISL------------VKMKFLPVDD--NFSLR----GEALQKAIEEDKQRGLVPVFVCAT  248 (481)
T ss_dssp             TEEEEEETTSC-HHHHHHHHHHT------------CEEEEECCCT--TSCCC----HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CeEEEEcCcch-HHHHHHHHhCC------------CceEEEEcCC--CCcCC----HHHHHHHHHHHHhCCCCcEEEEEe
Confidence            33455555444 43333333322            2222222211  12224    67888888632  11125667777


Q ss_pred             ccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeee--ccccccCccccccccC
Q 011669          262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTT  338 (480)
Q Consensus       262 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~--sK~~g~G~pig~v~~~  338 (480)
                      ...+++|.+.+    +++|.++|++||+++++|++|.++.... ..+.....++ ..|.+++  .|.++..+.+|+++.+
T Consensus       249 ~~~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~-~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~  323 (481)
T 4e1o_A          249 LGTTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLC-PEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVK  323 (481)
T ss_dssp             BSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGS-GGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEES
T ss_pred             cCCCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhC-hhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEe
Confidence            67777888866    9999999999999999999998653322 1111112233 3577765  5999877777877776


Q ss_pred             HH-HH-HhhcCCCcc--c------------cC-CCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669          339 PE-IA-EVLTRRNYF--N------------TF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKY  398 (480)
Q Consensus       339 ~~-~~-~~l~~~~~~--~------------t~-~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~  398 (480)
                      ++ .. +.+.....+  .            +. .+.+.......++|+.+..   ++..++..++.+++++.|+++    
T Consensus       324 ~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----  399 (481)
T 4e1o_A          324 DKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND----  399 (481)
T ss_dssp             BHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             CHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence            54 32 222111000  0            00 1111122333344443333   345566666677777766654    


Q ss_pred             CceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCce-eeccCcC-CCEEEEeCCC-CCCHHHHHHHHHHHH
Q 011669          399 GIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL-VGKGGFY-GNVFRITPPL-CFTKEDADYLVDVMD  474 (480)
Q Consensus       399 ~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~~~~-~~~iRi~p~~-~~t~~~id~~l~~l~  474 (480)
                      +.+..+ .....++++.+..       .......+.+.|.++|++ +.++... ..++||+... .+|++||++++++|+
T Consensus       400 ~g~~~~~~~~~~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~  472 (481)
T 4e1o_A          400 PSFEIPAKRHLGLVVFRLKG-------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIR  472 (481)
T ss_dssp             TTEECCSCCCSSEEEEEESS-------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEecCCceeEEEEEeCC-------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            222221 2233455565521       123456788889888854 4443222 3579999653 458999999999999


Q ss_pred             HHHhh
Q 011669          475 YSLSK  479 (480)
Q Consensus       475 ~~l~~  479 (480)
                      +++++
T Consensus       473 ~~~~~  477 (481)
T 4e1o_A          473 DAATL  477 (481)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.75  E-value=6.9e-16  Score=160.45  Aligned_cols=326  Identities=10%  Similarity=-0.025  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHHhcccccccc--CChHHHHHHHHHHHhCCCCC---------CEEEEeCCHHHHHHHHHHHHHhhc-----
Q 011669          119 YVVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLYT-----  182 (480)
Q Consensus       119 ~v~~A~~~~~~~~~~~~~~~--~~~~~~~l~e~L~~~~~~~~---------~~v~f~~sGseA~~~Alk~ar~~~-----  182 (480)
                      .+.+++...+..........  ......+++++++++++.+.         ..++||+||||||..|+..++...     
T Consensus        89 ~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~  168 (486)
T 1js3_A           89 MLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQ  168 (486)
T ss_dssp             HHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhh
Confidence            46666666654322111111  12333456667788876542         358899999999999999886431     


Q ss_pred             ---CC-------ce--EEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          183 ---GC-------ND--IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       183 ---~~-------~~--ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                         +.       ++  |++.+.+|+.....+. ..+.          .+..++..    ..+.-|    .++|+++|+..
T Consensus       169 ~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~-~~G~----------~v~~v~~d----~~~~~d----~~~L~~~i~~~  229 (486)
T 1js3_A          169 AASPGLTQGAVLEKLVAYASDQAHSSVERAGL-IGGV----------KLKAIPSD----GKFAMR----ASALQEALERD  229 (486)
T ss_dssp             HHSTTCCHHHHHHHEEEEEETTCCHHHHHHHH-HHTC----------EEEEECCC----TTSCCC----HHHHHHHHHHH
T ss_pred             ccCccchhcccCCCEEEEECCCCcHHHHHHHH-hCCC----------ceEEeecC----CCCCCC----HHHHHHHHHHH
Confidence               21       23  5556666654332222 2211          22233321    122234    67888888642


Q ss_pred             C--CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeee--ccc
Q 011669          251 T--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKG  325 (480)
Q Consensus       251 ~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~--sK~  325 (480)
                      .  ...+.+|++...++++|.+.+    +++|.++|++||+++++|++|.++....+.+ .....++ ..|++++  +|.
T Consensus       230 ~~~g~~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~-~~~~~g~~~adsi~~~~hK~  304 (486)
T 1js3_A          230 KAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEF-RHLLNGVEFADSFNFNPHKW  304 (486)
T ss_dssp             HHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTT-GGGGTTGGGCSEEEECHHHH
T ss_pred             HhCCCCceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHH-HHHhcCccccCeeEEchhhh
Confidence            1  112346666666677887766    9999999999999999999998653222111 1111122 3577664  599


Q ss_pred             cccCccccccccCHH--HHHhhcCC---Ccc-c----------cC---CCcHHHHHHHHHHHHHhhhh---HHHHHHHHH
Q 011669          326 IGNGIPLGAVVTTPE--IAEVLTRR---NYF-N----------TF---GGNPVCTAAGHAVLKVIQKD---KLQNNAHVV  383 (480)
Q Consensus       326 ~g~G~pig~v~~~~~--~~~~l~~~---~~~-~----------t~---~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~  383 (480)
                      ++..+++|+++++++  +.+.+...   ... .          .+   .+.+....+..++++.+..+   +..++..++
T Consensus       305 ~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~  384 (486)
T 1js3_A          305 LLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQL  384 (486)
T ss_dssp             SSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            887789999998754  24444211   000 0          00   01111223333444433333   345555666


Q ss_pred             HHHHHHHHHHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeC-CC
Q 011669          384 GSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITP-PL  459 (480)
Q Consensus       384 ~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p-~~  459 (480)
                      .+++.+.|+++    +.+..+ ...+.++.+.+..       .......+.+.|.++|+++...+.+  .+++|++. ..
T Consensus       385 a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~  453 (486)
T 1js3_A          385 SHEFEAFVLQD----PRFEVCAEVTLGLVCFRLKG-------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSR  453 (486)
T ss_dssp             HHHHHHHHHHC----TTEEECSCCCSSEEEEEESS-------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCT
T ss_pred             HHHHHHHHhcC----CCeEEeCCCceeEEEEEecC-------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCC
Confidence            66666666553    322221 2334455555421       1122467888888888764332222  35899995 34


Q ss_pred             CCCHHHHHHHHHHHHHHHhh
Q 011669          460 CFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       460 ~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..|+++|++++++|++++++
T Consensus       454 ~~t~~di~~~~~~l~~~~~~  473 (486)
T 1js3_A          454 KVESGHVRLAWEHIRGLAAE  473 (486)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999988653

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.75  E-value=7.6e-17  Score=166.69  Aligned_cols=320  Identities=14%  Similarity=0.105  Sum_probs=177.6

Q ss_pred             CCHHHHHHHHHHHHh-ccc--cccccC--Ch---HH-HHHHHHHHHhCCCCCC---EEEEeCCHHHHHHHHHHHHHhhcC
Q 011669          116 CHPYVVDSIVNQIKR-IQH--STVLYL--NH---AI-ADFAEALASKMPGNLK---VVFFTNSGTEANELAIMMARLYTG  183 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~-~~~--~~~~~~--~~---~~-~~l~e~L~~~~~~~~~---~v~f~~sGseA~~~Alk~ar~~~~  183 (480)
                      .+|+|++|+.+.+.+ ..+  ....|.  ++   .+ ...+++++++++.+.+   ..++++||++||..+++....  +
T Consensus        66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~--p  143 (490)
T 2a7v_A           66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--P  143 (490)
T ss_dssp             CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC--S
T ss_pred             CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcC--C
Confidence            579999999887654 211  111111  12   22 2344889999976553   346778999999999986643  6


Q ss_pred             CceEEEEcCCcccccc-c------ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceE
Q 011669          184 CNDIISLRNAYHGNAA-G------TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA  256 (480)
Q Consensus       184 ~~~ii~~~~~yhG~~~-~------~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a  256 (480)
                      +++|++.+..|.|... +      .+...+.          .+..++++.. ...+..|    .+++++++...   +++
T Consensus       144 GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~----------~~~~~~~~vd-~~~~~iD----~d~le~~l~~~---~~k  205 (490)
T 2a7v_A          144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSI----------FFESMPYKLN-PKTGLID----YNQLALTARLF---RPR  205 (490)
T ss_dssp             CEECCC-----------------------------------------CCBC-TTTCSBC----HHHHHHHHHHH---CCS
T ss_pred             CCEecccCccccccccchhhhcchhHHHcCC----------eEEEEecccc-cccCCcC----HHHHHHHHhhc---CCc
Confidence            7888888776643211 1      1111110          0111111100 0011123    67888888632   345


Q ss_pred             EEEEcc-cCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCccee--eeccccccCccc
Q 011669          257 GFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPL  332 (480)
Q Consensus       257 ~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G~pi  332 (480)
                      +|++.. .++   ...+    +++|+++|++||++||+|++|. |+...|.....++    ..|++  |++|+++ |.+.
T Consensus       206 lIi~~~s~~~---~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~~S~hK~l~-Gp~G  273 (490)
T 2a7v_A          206 LIIAGTSAYA---RLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLR-GARS  273 (490)
T ss_dssp             EEEECCSSCC---SCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGGGC-SCSC
T ss_pred             EEEEcCCCCC---Cccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEEECCcccCc-cccc
Confidence            666653 332   2222    9999999999999999999974 3322331111111    24666  5679995 4567


Q ss_pred             cccccCHH---------------HHHhhcCCCccccCCC-cHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHH
Q 011669          333 GAVVTTPE---------------IAEVLTRRNYFNTFGG-NPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTA  393 (480)
Q Consensus       333 g~v~~~~~---------------~~~~l~~~~~~~t~~~-~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~  393 (480)
                      |+++++++               +.+.+......++.++ ++..+++..+++..+..   +++.+++.++.+++++.|.+
T Consensus       274 G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~  353 (490)
T 2a7v_A          274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE  353 (490)
T ss_dssp             EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            88888764               3444443322233343 33444444445655433   34667778888888888877


Q ss_pred             hHHhcCceeeEec-cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------cCCCEEEEeCCC----CC
Q 011669          394 LKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------FYGNVFRITPPL----CF  461 (480)
Q Consensus       394 l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~----~~  461 (480)
                      .  .+..+.  .+ ...++++++....       .....+.+.|.+.||.+..+.       .....|||+.|.    .+
T Consensus       354 ~--G~~v~~--~~t~t~lv~vdl~~~g-------~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~  422 (490)
T 2a7v_A          354 R--GYSLVS--GGTDNHLVLVDLRPKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQF  422 (490)
T ss_dssp             T--TCEEGG--GSCSSSEEEEECTTTT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTC
T ss_pred             c--CcEEec--CCCCCeEEEEEeCCCC-------CCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCC
Confidence            4  222111  11 2345666663221       113557778889999997431       123679996543    46


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 011669          462 TKEDADYLVDVMDYSLS  478 (480)
Q Consensus       462 t~~~id~~l~~l~~~l~  478 (480)
                      +++|++++++.|.+++.
T Consensus       423 ~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          423 REDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            89999999999988874

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.72  E-value=2.7e-16  Score=161.27  Aligned_cols=288  Identities=14%  Similarity=0.083  Sum_probs=167.5

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCee
Q 011669          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH  220 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~  220 (480)
                      +...+++++++++++.+.+++.++++|+.++++++..++ ..++++||+.++.|+...........         ..|+.
T Consensus       108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~~gd~Viv~~~~h~s~~~~~~~~a~---------~~G~~  177 (438)
T 1wyu_A          108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ETGRMGVLVSQGVHPEYRAVLRAYLE---------AVGAK  177 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HHTCCEEEEETTSCHHHHHHHHHHHH---------HTTCE
T ss_pred             HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cCCCCEEEEcCccCHhHHHHHHHHHH---------HCCCE
Confidence            456789999999987655567899999955555544433 34678899888877554322211100         01222


Q ss_pred             EecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc-ccC
Q 011669          221 HALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV-QAG  299 (480)
Q Consensus       221 ~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv-~tg  299 (480)
                      .+.++..   .+..|       +++ ++    +++++|++... +++|.+.+    +++|.++|++||+++|+|-- ++ 
T Consensus       178 v~~v~~~---~~~~d-------~~~-i~----~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a-  236 (438)
T 1wyu_A          178 LLTLPLE---GGRTP-------LPE-VG----EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS-  236 (438)
T ss_dssp             EEEECCB---TTBCC-------CCC-CC----TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-
T ss_pred             EEEEcCc---CCccC-------HHH-hC----CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-
Confidence            2222210   11112       111 32    36788887776 78888875    99999999999999995522 22 


Q ss_pred             ccccCCCcccccccCCCcceeeec-cccc-----cCccccccccCHHHHHhhcCCCc-----------------------
Q 011669          300 FARTGSHFWGFEAHGVVPDIVTMA-KGIG-----NGIPLGAVVTTPEIAEVLTRRNY-----------------------  350 (480)
Q Consensus       300 fgr~G~~~~~~~~~~~~pDivt~s-K~~g-----~G~pig~v~~~~~~~~~l~~~~~-----------------------  350 (480)
                      +|... ..   ..+  .+|++++| |.++     +|.++|++++++++++.+.....                       
T Consensus       237 ~g~~~-~~---~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~  310 (438)
T 1wyu_A          237 LGVLK-PP---GAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI  310 (438)
T ss_dssp             GGTBC-CH---HHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred             ccCcC-CC---ccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeecccccccc
Confidence            32211 11   112  36788764 6543     45689999999988776532210                       


Q ss_pred             ---cccCCC---cHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc
Q 011669          351 ---FNTFGG---NPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL  421 (480)
Q Consensus       351 ---~~t~~~---~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~  421 (480)
                         ..|.+.   +.++..++...++.+.++   +..++..++.+++.++|+++    +.+........+..+.+..+   
T Consensus       311 r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~---  383 (438)
T 1wyu_A          311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----PGVRPFTPKPFFNEFALALP---  383 (438)
T ss_dssp             HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTCEECSCSSBCSEEEEECS---
T ss_pred             chhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEECCCCCeEEEEEEeCC---
Confidence               122222   223222222224444333   34455556666666666543    22221111123333333211   


Q ss_pred             CCCCHHHHHHHHHHHHHcCcee--eccCcC-CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          422 KTPAKAETLYIMDKMKEMGVLV--GKGGFY-GNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       422 ~~~~~~~~~~~~~~l~~~Gv~v--~~~~~~-~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                           .....+.+.|.++||.+  .++..+ .+++||++...+|++|+++++++|++++
T Consensus       384 -----~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          384 -----KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             -----SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             -----CCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence                 01467888999999999  444322 5789999988899999999999998864

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.72  E-value=1.2e-15  Score=158.01  Aligned_cols=301  Identities=10%  Similarity=-0.052  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHhCCCCC---------CEEEEeCCHHHHHHHHHHHHHhhc-----------------CCceEEEEcCCccc
Q 011669          143 IADFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLYT-----------------GCNDIISLRNAYHG  196 (480)
Q Consensus       143 ~~~l~e~L~~~~~~~~---------~~v~f~~sGseA~~~Alk~ar~~~-----------------~~~~ii~~~~~yhG  196 (480)
                      ..++++++++.++.+.         ...+|++|||+||..|+..+|...                 ++..|++.+..+ -
T Consensus       115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H-~  193 (475)
T 3k40_A          115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAH-S  193 (475)
T ss_dssp             HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSC-H
T ss_pred             HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCch-H
Confidence            3445566677775432         268899999999999999987542                 122345544444 4


Q ss_pred             ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCceEEEEEcccCCCCcceeCCC
Q 011669          197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAP  274 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~  274 (480)
                      ....+....            |+....+|....+   .|    .++|+++|+...  ...+.+|++....+++|.+.+  
T Consensus       194 s~~~~~~~~------------g~~~~~v~~d~~~---~d----~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~--  252 (475)
T 3k40_A          194 SVERAGLLG------------GVKLRSVQSENHR---MR----GAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY--  252 (475)
T ss_dssp             HHHHHHHHH------------TCEEEEECCBTTB---CC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC--
T ss_pred             HHHHHHHHc------------CCceEEEECCCCC---cC----HHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC--
Confidence            333333332            2222222221111   23    678888886421  112556666666677888876  


Q ss_pred             ChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeee--ccccccCccccccccCHH-H-HHhhcCCC
Q 011669          275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE-I-AEVLTRRN  349 (480)
Q Consensus       275 ~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~--sK~~g~G~pig~v~~~~~-~-~~~l~~~~  349 (480)
                        +++|.++|++||+++++|++|.+..... ..+.....++ ..|.+++  .|.+++.+.+|+++.+++ . .+.+....
T Consensus       253 --l~~I~~la~~~~~~lhvD~A~~~~~~~~-~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~  329 (475)
T 3k40_A          253 --LDECGPVGNKHNLWIHVDAAYAGSAFIC-PEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDP  329 (475)
T ss_dssp             --HHHHHHHHHHTTCEEEEECTTGGGGGGS-GGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------
T ss_pred             --HHHHHHHHHHhCCeEEEeHHhHHHHHhC-HhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCc
Confidence              9999999999999999999997642222 1111111232 3577766  499987777888877643 2 12221100


Q ss_pred             -c------c--------ccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-ecccee
Q 011669          350 -Y------F--------NTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFL  410 (480)
Q Consensus       350 -~------~--------~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~  410 (480)
                       +      .        ....+.+.......++|+.+..   +++.++..++.+++++.|+++    +.+..+ .....+
T Consensus       330 ~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~l~~~~~~~i  405 (475)
T 3k40_A          330 LYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD----SRFELAAEINMGL  405 (475)
T ss_dssp             -------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEESSCCBTTE
T ss_pred             cccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceEE
Confidence             0      0        0001212233344455554433   345566667777777777664    222211 123345


Q ss_pred             EEEEEecCCCcCCCCHHHHHHHHHHHHHcCcee-eccCcC-CCEEEEeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669          411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLV-GKGGFY-GNVFRITPP-LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v-~~~~~~-~~~iRi~p~-~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +.+.+..       .......+.+.|.++|.++ .++... ..++||++. ..+|++||++++++|++++++
T Consensus       406 v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~  470 (475)
T 3k40_A          406 VCFRLKG-------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE  470 (475)
T ss_dssp             EEEEESS-------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCC-------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            5555522       1234567888898888654 333222 368999965 345899999999999988764

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.69  E-value=9.2e-16  Score=153.33  Aligned_cols=322  Identities=12%  Similarity=0.041  Sum_probs=191.1

Q ss_pred             CCCCHHHHHHHHHHHHhccc-cccc--------cCChHHHHHHHHHHHhCCCCC-CEEEE-eCCHHHHHHHHHHHHHhhc
Q 011669          114 GHCHPYVVDSIVNQIKRIQH-STVL--------YLNHAIADFAEALASKMPGNL-KVVFF-TNSGTEANELAIMMARLYT  182 (480)
Q Consensus       114 Gh~~p~v~~A~~~~~~~~~~-~~~~--------~~~~~~~~l~e~L~~~~~~~~-~~v~f-~~sGseA~~~Alk~ar~~~  182 (480)
                      +..+|+|.+|+.+.+.+... ..+.        -......+.+++|+++++.+. ++|+| +.|||||++++++......
T Consensus        22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~  101 (377)
T 3e77_A           22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLK  101 (377)
T ss_dssp             CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGS
T ss_pred             CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCC
Confidence            45789999999987754211 1110        013456788899999987643 46888 5899999999998665422


Q ss_pred             CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc
Q 011669          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES  262 (480)
Q Consensus       183 ~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep  262 (480)
                      ++++++....+.++....  ...         ...|......+......  .+    .++++..+    .++++.|.+-.
T Consensus       102 ~Gd~v~~~~~g~~~~~~~--~~a---------~~~G~~~~~~~~~~~~~--~~----~~~~~~~i----~~~t~lV~~~h  160 (377)
T 3e77_A          102 AGRCADYVVTGAWSAKAA--EEA---------KKFGTINIVHPKLGSYT--KI----PDPSTWNL----NPDASYVYYCA  160 (377)
T ss_dssp             TTCEEEECCCSHHHHHHH--HHH---------TTTSEEEECSCCCSSSC--SC----CCGGGCCC----CTTCSCEEEES
T ss_pred             CCCeEEEEECCHHHHHHH--HHH---------HHhCCceEEeccCCCcC--CC----CChHHhcc----CCCccEEEEeC
Confidence            356777777777664211  110         11243333233211111  11    12222222    23667777766


Q ss_pred             cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHH
Q 011669          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPE  340 (480)
Q Consensus       263 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~  340 (480)
                      +.+.+|.+.|    +     +|+++|+++++|-+|+ +|..   .+..+.++    ++++|  |.+| .-.+|+++++++
T Consensus       161 ~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~~---~id~~~~~----~~~~s~~K~~g-p~G~g~l~~~~~  222 (377)
T 3e77_A          161 NETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLSK---PVDVSKFG----VIFAGAQKNVG-SAGVTVVIVRDD  222 (377)
T ss_dssp             EETTTTEECS----S-----CCCCTTCCEEEECTTT-TTSS---CCCGGGCS----EEEEEGGGTTS-CTTCEEEEEETT
T ss_pred             ccCchheEch----h-----hhccCCCEEEEEcccc-cCCC---CCchhhcC----EEEEecccccC-CCccEEEEEcHH
Confidence            6677798876    3     4789999999999997 5432   22234344    34444  9995 445688888877


Q ss_pred             HHHhhcCCC-----------ccccCCC-cHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcC-ceee
Q 011669          341 IAEVLTRRN-----------YFNTFGG-NPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYG-IIGD  403 (480)
Q Consensus       341 ~~~~l~~~~-----------~~~t~~~-~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~  403 (480)
                      +.+.+.+..           ...+++. |..+.++..++|+.+.++    +..++.+++.++++++|+++.. +. ....
T Consensus       223 ~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g-~~~~~~~  301 (377)
T 3e77_A          223 LLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQG-FYVCPVE  301 (377)
T ss_dssp             SCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTT-SEECCSC
T ss_pred             HHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCC-ceecCCC
Confidence            654433210           1123433 444555666788877654    3556667777777777766411 10 0001


Q ss_pred             Eecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          404 VRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       404 v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ...+ +..+.|.+...    .++......+...+.++||.+.++-...+.+|+++...+|++|||.+++.|++++++
T Consensus       302 ~~~rs~~ivsf~~~~~----~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          302 PQNRSKMNIPFRIGNA----KGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             GGGBCSSEEEEEESST----TCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCcEEEEEcCCC----CCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            1112 23355555221    111122245777788999998776332356999999999999999999999998764

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.69  E-value=3.5e-15  Score=151.15  Aligned_cols=284  Identities=12%  Similarity=0.091  Sum_probs=171.9

Q ss_pred             CCHHHHHHHHHHHHh---ccc-cccccCChHHHHHHHHHHHhCCCCCCEEEE---eCCHHHHHHHHHHHHHhhcCCceEE
Q 011669          116 CHPYVVDSIVNQIKR---IQH-STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII  188 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~---~~~-~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f---~~sGseA~~~Alk~ar~~~~~~~ii  188 (480)
                      |+++|.+|+.+....   ... ....|......+|.++++++++.  +..++   ++||++|+..+++...  .+++.||
T Consensus        30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all--~~GD~Vl  105 (409)
T 3jzl_A           30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT--EAALVRPQIISGTHAISTVLFGIL--RPDDELL  105 (409)
T ss_dssp             HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTSCSHHHHHHHHHHHHC--CTTCEEE
T ss_pred             hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC--CcEEEECCCccHHHHHHHHHHHhc--CCCCEEE
Confidence            457888888775321   111 11245567788999999999864  44455   8999999999998653  3678888


Q ss_pred             EEc-CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc----c
Q 011669          189 SLR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----I  263 (480)
Q Consensus       189 ~~~-~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep----i  263 (480)
                      +.+ +.|.+... .+...+.  ........|+....++...  .+..|    .++++++++    +++++|++++    +
T Consensus       106 ~~~~~~y~~~~~-~~~~~g~--~~~~l~~~G~~~~~v~~~~--~g~~d----~e~l~~ai~----~~tklV~i~~s~g~p  172 (409)
T 3jzl_A          106 YITGQPYDTLEE-IVGIRKQ--GQGSLKDFHIGYSSVPLLE--NGDVD----FPRIAKKMT----PKTKMIGIQRSRGYA  172 (409)
T ss_dssp             ECSSSCCTTHHH-HHTSSSS--SSSCTGGGTCEEEECCCCT--TSCCC----HHHHHHHCC----TTEEEEEEECSCTTS
T ss_pred             EeCCCCcHhHHH-HHhcccc--hhhHHHHcCCEEEEeCCCC--CCCcC----HHHHHHhcc----CCCeEEEEECCCCCC
Confidence            887 66655432 1111111  0000111244444333211  12233    677877774    3789999998    8


Q ss_pred             CCCCcceeCCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccC--cccccccc
Q 011669          264 QGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVT  337 (480)
Q Consensus       264 ~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G--~pig~v~~  337 (480)
                      ++++|.+.+    +++|.++|++  ||+++|+||+|..+.... ..     .....|++  +++|.++++  ...|++++
T Consensus       173 ~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~-~p-----~~~g~Div~~S~sK~lgg~~~~~GG~v~~  242 (409)
T 3jzl_A          173 DRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQ-EP-----PEVGADIIAGSLIKNPGGGLAKTGGYIAG  242 (409)
T ss_dssp             SSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSC-CS-----GGGTCSEEEEETTSGGGTTTCSSCEEEEE
T ss_pred             CCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccC-Cc-----cccCCeEEEECccccCCccCCceEEEEEe
Confidence            888888876    9999999999  999999999987442111 11     11234665  688999964  34589999


Q ss_pred             CHHHHHhhcCCC----ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee----Eeccce
Q 011669          338 TPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD----VRGRGF  409 (480)
Q Consensus       338 ~~~~~~~l~~~~----~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~----v~g~g~  409 (480)
                      ++++++.+....    .+.+.+..+..+.+++..|+.+  +...++..+...++.+.|+++    +....    .++..+
T Consensus       243 ~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~v~p~~~~~~~~~  316 (409)
T 3jzl_A          243 KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEF----GVEADPVWDAPRTDL  316 (409)
T ss_dssp             CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEEESCTTSCCSSS
T ss_pred             CHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCCccE
Confidence            999988876421    1122332222233344444422  345566667777777777765    32111    111223


Q ss_pred             eEEEEEecCCCcCCCCHHHHHHHHHHHHHcC
Q 011669          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMG  440 (480)
Q Consensus       410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G  440 (480)
                      ++.+.+.        +......+++.|.+..
T Consensus       317 i~~i~l~--------~~~~~~~~~~~L~~~~  339 (409)
T 3jzl_A          317 IQSVSFH--------NKEKMVAFAQAIQAAS  339 (409)
T ss_dssp             CCEEECS--------CHHHHHHHHHHHHHTS
T ss_pred             EEEEEeC--------CHHHHHHHHHHHHhcC
Confidence            6666662        3445677888888765

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.64  E-value=2.6e-14  Score=145.41  Aligned_cols=285  Identities=14%  Similarity=0.123  Sum_probs=169.3

Q ss_pred             CHHHHHHHHHHHH--h-cccc-ccccCChHHHHHHHHHHHhCCCCCCEEEE---eCCHHHHHHHHHHHHHhhcCCceEEE
Q 011669          117 HPYVVDSIVNQIK--R-IQHS-TVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDIIS  189 (480)
Q Consensus       117 ~p~v~~A~~~~~~--~-~~~~-~~~~~~~~~~~l~e~L~~~~~~~~~~v~f---~~sGseA~~~Alk~ar~~~~~~~ii~  189 (480)
                      .++|.+|+.+...  . +... ...|......+|.++++++++.  +..++   ++||++||..++.....  +++.||+
T Consensus        45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all~--pGD~Vl~  120 (427)
T 3i16_A           45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNT--ESALVRPHFVNGTHALGAALFGNLR--PGNTMLS  120 (427)
T ss_dssp             HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHHCC--TTCEEEE
T ss_pred             HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCC--cceEEeCCCccHHHHHHHHHHHHhC--CCCEEEE
Confidence            4678887766421  1 1111 1235567788999999999965  33345   89999999999886533  6788888


Q ss_pred             Ec-CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc----cC
Q 011669          190 LR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----IQ  264 (480)
Q Consensus       190 ~~-~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep----i~  264 (480)
                      .+ +.|++..... ....... .......|+....++....+  ..|    .++++++++.  ..++++|++++    ++
T Consensus       121 ~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~g--~~D----~e~l~~~l~~--~~~tklV~i~~s~~~p~  190 (427)
T 3i16_A          121 VCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKEDG--KPN----LEEIEKVLKE--DESITLVHIQRSTGYGW  190 (427)
T ss_dssp             SSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTTS--SCC----HHHHHHHHHT--CTTEEEEEEECSCCSSS
T ss_pred             eCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccCC--CcC----HHHHHHHhhC--CCCCEEEEEEcCCCCCC
Confidence            88 6776543211 1110000 00011124444444322111  123    6788888863  13789999999    78


Q ss_pred             CCCcceeCCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccC--ccccccccC
Q 011669          265 GVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVTT  338 (480)
Q Consensus       265 ~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G--~pig~v~~~  338 (480)
                      |++|.+.+    +++|.++|++  ||+++|+||+|..+.... ..  . ..+  .|++  |++|.++++  .+.|+++++
T Consensus       191 nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~-~p--~-~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~  260 (427)
T 3i16_A          191 RRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTK-EP--T-DVG--ADLIAGSLIKNIGGGIAPTGGYLAGT  260 (427)
T ss_dssp             SCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSS-CG--G-GGT--CSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred             CCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccC-Cc--c-ccC--CeEEEecCcccCCCCCCceEEEEEEC
Confidence            88887766    9999999999  999999999997543122 11  1 123  3555  788999964  467899999


Q ss_pred             HHHHHhhcCCCccccCC---CcHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccce-----
Q 011669          339 PEIAEVLTRRNYFNTFG---GNPVC-TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF-----  409 (480)
Q Consensus       339 ~~~~~~l~~~~~~~t~~---~~~~~-~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~-----  409 (480)
                      +++++.+........++   +..+. +..++..|+.+  ....++..+...++.+.|+++    +... .++...     
T Consensus       261 ~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~~  333 (427)
T 3i16_A          261 KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELA----GFEV-MPKYDEKRSDI  333 (427)
T ss_dssp             HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSSS
T ss_pred             HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCccE
Confidence            99998876521111111   11122 23333333321  344566666677777777665    3211 222222     


Q ss_pred             eEEEEEecCCCcCCCCHHHHHHHHHHHHHcC
Q 011669          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKEMG  440 (480)
Q Consensus       410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G  440 (480)
                      ++.+.+.        +......+++.|....
T Consensus       334 i~~i~l~--------~~~~~~~f~~~l~~~~  356 (427)
T 3i16_A          334 IQSIKFN--------DKDKLIEFCKGIQTGS  356 (427)
T ss_dssp             CEEEECS--------SHHHHHHHHHHHHHTC
T ss_pred             EEEEEEC--------CHHHHHHHHHHHhhcC
Confidence            6666662        2345677888888763

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.63  E-value=4.8e-14  Score=143.42  Aligned_cols=284  Identities=14%  Similarity=0.084  Sum_probs=169.8

Q ss_pred             CCHHHHHHHHHHHHhccc----cccccCChHHHHHHHHHHHhCCCCCCEEEE---eCCHHHHHHHHHHHHHhhcCCceEE
Q 011669          116 CHPYVVDSIVNQIKRIQH----STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII  188 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~----~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f---~~sGseA~~~Alk~ar~~~~~~~ii  188 (480)
                      ++++|.+|+.+......+    ....|......+|+++++++++.  +..++   ++||++||..++....  .+++.|+
T Consensus        45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~--e~alv~p~~~sGt~A~~~al~all--~pGD~Vl  120 (427)
T 3hvy_A           45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT--ESAFVRPHFVNGTHAIGAALFGNL--RPNDTMM  120 (427)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHTC--CTTCEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC--CceEEeCCCCcHHHHHHHHHHHhc--CCCCEEE
Confidence            457888888774321111    11235566788999999999864  44455   8999999999987643  3678899


Q ss_pred             EEc-CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc----c
Q 011669          189 SLR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----I  263 (480)
Q Consensus       189 ~~~-~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep----i  263 (480)
                      +.+ +.|++.... ......+ +.......|+....++.   ..+..|    .++++++++..  .++++|++++    +
T Consensus       121 ~~~~~~y~~~~~~-~g~~~~~-~~~~l~~~G~~~~~v~~---~~~~~d----~e~l~~~i~~~--~~tklV~i~~s~gyp  189 (427)
T 3hvy_A          121 SICGMPYDTLHDI-IGMDDSK-KVGSLREYGVKYKMVDL---KDGKVD----INTVKEELKKD--DSIKLIHIQRSTGYG  189 (427)
T ss_dssp             ECSSSCCGGGHHH-HTCCTTC-CSCCTGGGTCEEEECCC---BTTBCC----HHHHHHHHHHC--TTEEEEEEESSCCSS
T ss_pred             EeCCCCchhHHHH-hccccch-hhhHHHHcCCEEEEecC---CCCCcC----HHHHHHHhhCC--CCCEEEEEECCCCCC
Confidence            988 777665411 1100000 00001112444444332   112234    67888888631  3789999999    7


Q ss_pred             CCCCcceeCCCChHHHHHHHHHH--hCCEEEEcccccCccccCCCcccccccCCCccee--eeccccccC--cccccccc
Q 011669          264 QGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVT  337 (480)
Q Consensus       264 ~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~G--~pig~v~~  337 (480)
                      ++++|.+.+    +++|.++|++  ||+++|+||+|..+.... ..  . .++  .|++  |++|.++++  .+.|++++
T Consensus       190 ~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~-~p--~-~~g--aDiv~~S~sK~lgg~g~~~GG~i~~  259 (427)
T 3hvy_A          190 WRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEK-EP--T-DVG--ADIIAGSLIKNIGGGIATTGGYIAG  259 (427)
T ss_dssp             SSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSS-CG--G-GGT--CSEEEEETTSGGGTTTCCSCEEEEE
T ss_pred             CCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCC-CC--c-ccC--CeEEEECCcccccccccceEEEEEE
Confidence            788887765    9999999999  899999999997442122 11  1 123  4555  788999964  45689999


Q ss_pred             CHHHHHhhcCCC----ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecc-----c
Q 011669          338 TPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR-----G  408 (480)
Q Consensus       338 ~~~~~~~l~~~~----~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-----g  408 (480)
                      ++++++.+....    .+.+.+.++..+..++..|+.+  +...++..+...++.+.|+++    +... .++.     .
T Consensus       260 ~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~  332 (427)
T 3hvy_A          260 KEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA----GFDV-LPKYNDKRTD  332 (427)
T ss_dssp             CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSS
T ss_pred             CHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCce
Confidence            999988876521    1112222122133334444322  345566666777777777665    3211 2222     2


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHHHHc
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKEM  439 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~  439 (480)
                      +++.+.+.        +.....++++.|...
T Consensus       333 li~~~~l~--------~~~~~~~f~~~l~~~  355 (427)
T 3hvy_A          333 IIQAIKFN--------DEKKLIDFIKGIQTA  355 (427)
T ss_dssp             SEEEEECS--------SHHHHHHHHHHHHHT
T ss_pred             EEEEEeCC--------CHHHHHHHHHHhccc
Confidence            25666652        234567788888765

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.63  E-value=8.9e-15  Score=145.60  Aligned_cols=313  Identities=12%  Similarity=0.019  Sum_probs=183.2

Q ss_pred             CCHHHHHHHHHHHHhccc-cccc--------cCChHHHHHHHHHHHhCCCC-CCEEEE-eCCHHHHHHHHHHHHHhhcCC
Q 011669          116 CHPYVVDSIVNQIKRIQH-STVL--------YLNHAIADFAEALASKMPGN-LKVVFF-TNSGTEANELAIMMARLYTGC  184 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~-~~~~--------~~~~~~~~l~e~L~~~~~~~-~~~v~f-~~sGseA~~~Alk~ar~~~~~  184 (480)
                      .+|+|.+|+.+.+..... ..+.        -....+.+.++.|+++++.+ ..+|+| |+|||||++++++...   ++
T Consensus        16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~---~~   92 (361)
T 3m5u_A           16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA---LN   92 (361)
T ss_dssp             CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC---CS
T ss_pred             CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC---CC
Confidence            479999999987753211 0110        11255678889999998764 346777 9999999999998654   34


Q ss_pred             ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccC
Q 011669          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ  264 (480)
Q Consensus       185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~  264 (480)
                      +++.....+.++.... .....     .   ...+..++.+.  .+.+..+    .++ +  |+    ++++.|.+-.+.
T Consensus        93 ~~~~~i~~~~~~~~~~-~~a~~-----~---G~~v~~~~~~~--~g~~~~~----~~~-~--l~----~~t~lv~~~~~e  150 (361)
T 3m5u_A           93 GVCEYANTGVWTKKAI-KEAQI-----L---GVNVKTVASSE--ESNFDHI----PRV-E--FS----DNADYAYICSNN  150 (361)
T ss_dssp             SCEEEEECSHHHHHHH-HHHHH-----T---TCCEEEEEECT--TTTSCSC----CCC-C--CC----TTSSEEEEESEE
T ss_pred             CeEEEEeCCHHHHHHH-HHHHH-----c---CCceEEEeccc--CcCCCcC----Chh-h--cC----CCCCEEEEeCCC
Confidence            4443333344443211 11100     0   01223333221  1111001    112 2  32    356677776666


Q ss_pred             CCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHH
Q 011669          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIA  342 (480)
Q Consensus       265 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~  342 (480)
                      +.+|.+.+.         +++ +|+++++|-+|+ +|...     ++..  ..|++++|  |.+| .-.+|++++++++.
T Consensus       151 ~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~~-----id~~--~~d~~~~s~~K~~g-p~G~g~l~~~~~~~  211 (361)
T 3m5u_A          151 TIYGTQYQN---------YPK-TKTPLIVDASSD-FFSRK-----VDFS--NIALFYGGVQKNAG-ISGLSCIFIRKDML  211 (361)
T ss_dssp             TTTTEECSS---------CCC-CSSCEEEECGGG-TTSSC-----CCCT--TEEEEEEETTTTSS-CTTCEEEEEEHHHH
T ss_pred             CCcceeCCc---------ccc-cCCEEEEEcccc-cCCCC-----CCcc--cCCEEEEechhccC-CCccEEEEEcHHHH
Confidence            667887542         333 499999999997 54321     2222  25788776  9985 44578999999987


Q ss_pred             HhhcCC----C--------ccccCC-CcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          343 EVLTRR----N--------YFNTFG-GNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       343 ~~l~~~----~--------~~~t~~-~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                      +.+.+.    .        ...+++ .|..+..+..++|+.+.++    +..++.+++.++++++|+++..-+.......
T Consensus       212 ~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~  291 (361)
T 3m5u_A          212 ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKK  291 (361)
T ss_dssp             HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGG
T ss_pred             hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHH
Confidence            665430    0        112333 3455566666888887654    4556677777777777766520000011111


Q ss_pred             cc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          406 GR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       406 g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+ ...+.+.+...     + ... ..+...|.++||.+.++-..-+.+|+++...+|++|||.+++.|+++.++
T Consensus       292 ~rs~~ivsf~~~~~-----~-~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~  359 (361)
T 3m5u_A          292 DRSLMNVSFNIAKN-----K-DLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             GBCSSEEEEEESSC-----T-THH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCeEEEEECCCc-----h-hhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence            11 23445555210     0 112 35778888999998765322245999999999999999999999998764

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.63  E-value=2.3e-15  Score=151.17  Aligned_cols=322  Identities=11%  Similarity=0.005  Sum_probs=184.4

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc----------ccccccCChHHHHHHHHHHHhCCCCC-CEEEE-eCC
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ----------HSTVLYLNHAIADFAEALASKMPGNL-KVVFF-TNS  166 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~----------~~~~~~~~~~~~~l~e~L~~~~~~~~-~~v~f-~~s  166 (480)
                      +.|||..+..      --+|+|++|+.+.+.+..          |.. .-......+.++.|+++++... ++|+| +.|
T Consensus        27 ~~yl~~agpt------~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~-~~~~~~~~~ar~~la~ll~~~~~~evif~t~~   99 (386)
T 3qm2_A           27 QVFNFSSGPA------MLPAEVLKLAQQELCDWHGLGTSVMEISHRG-KEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGG   99 (386)
T ss_dssp             CCEECCSSSC------CCCHHHHHHHTCC------------------------CCHHHHHHHHHHHTCCTTEEEEEEESC
T ss_pred             cCccccCCCC------CCCHHHHHHHHHHHHhccccCccccccCCCC-HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCC
Confidence            4688754332      357999999987664421          111 1113456788899999987643 46788 699


Q ss_pred             HHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC-eeEecCCCCcCCCCC--CChHHHHHHH
Q 011669          167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG-VHHALNPDPYRGVFG--ADGEMYAKDV  243 (480)
Q Consensus       167 GseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g-~~~~~~p~~~~~~~~--~d~~~~~~~l  243 (480)
                      ||||++++++....  ++++++....+.++... ......          .| +..++.+..   .++  .+    .+++
T Consensus       100 ~T~a~n~ai~~l~~--~gd~v~~~~~~~~~~~~-~~~a~~----------~G~v~~v~~~~~---~~G~~~~----~~~~  159 (386)
T 3qm2_A          100 GRGQFAGVPLNLLG--DKTTADYVDAGYWAASA-IKEAKK----------YCAPQIIDAKIT---VDGKRAV----KPMR  159 (386)
T ss_dssp             TTHHHHHHHHHHCT--TCCEEEEEESSHHHHHH-HHHHTT----------TSEEEEEECEEE---ETTEEEE----CCGG
T ss_pred             chHHHHHHHHhccC--CCCeEEEEeCCHHHHHH-HHHHHH----------hCCeEEEecCcc---cCCCCCC----chHH
Confidence            99999999986532  45677766666666421 111110          12 222222100   011  01    1233


Q ss_pred             HHHHHccCCCceEEEEEcccCCCCcce-eCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee
Q 011669          244 QDLIDFGTSGHVAGFLSESIQGVGGII-ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM  322 (480)
Q Consensus       244 e~~i~~~~~~~~a~vi~epi~~~~G~~-~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~  322 (480)
                      +..++    +++++|.+-.+.+.+|.+ .|    +++|.     +|+++++|-+|+ +|..   ....+.++  .++.+-
T Consensus       160 ~~~l~----~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g~~---pidv~~~~--~~~~s~  220 (386)
T 3qm2_A          160 EWQLS----DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-ILSA---PLDVSRYG--VIYAGA  220 (386)
T ss_dssp             GCCCC----TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-TTSS---CCCGGGCS--EEEEET
T ss_pred             HhhcC----CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-cCCC---CCCccccC--EEEEec
Confidence            33332    367778777777778986 54    33332     899999999997 5432   22233333  233333


Q ss_pred             ccccccCccccccccCHHHHHhhcCCC-----------ccccC-CCcHHHHHHHHHHHHHhhhh----HHHHHHHHHHHH
Q 011669          323 AKGIGNGIPLGAVVTTPEIAEVLTRRN-----------YFNTF-GGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSY  386 (480)
Q Consensus       323 sK~~g~G~pig~v~~~~~~~~~l~~~~-----------~~~t~-~~~~~~~aaa~a~L~~i~~~----~~~~~~~~~~~~  386 (480)
                      -|.+| ...+|++++++++.+.+.+..           ....+ ..|..+.++..++|+.+.++    +..++.+++.++
T Consensus       221 hK~lG-P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~  299 (386)
T 3qm2_A          221 QKNIG-PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAEL  299 (386)
T ss_dssp             TTTTC-CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ccccC-CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            49994 455788999888754433210           01112 22334555666777776554    355666777777


Q ss_pred             HHHHHHHhHHhcCceee---Eecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCC
Q 011669          387 LKERLTALKDKYGIIGD---VRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFT  462 (480)
Q Consensus       387 l~~~L~~l~~~~~~~~~---v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t  462 (480)
                      ++++|+++    ++...   ...+ ...+.|.+...       ... ..+...|.++||.+..+-...+.+|+++...+|
T Consensus       300 l~~~l~~~----~~~~~~~~~~~rs~~iv~f~~~~~-------~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t  367 (386)
T 3qm2_A          300 LYGVIDNS----DFYRNDVAQANRSRMNVPFQLADN-------TLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMP  367 (386)
T ss_dssp             HHHHHHTC----SSEECCBCGGGBCSSEEEEEESSG-------GGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSC
T ss_pred             HHHHHHHC----CCcccCCCHHHcCceEEEEECCCc-------ccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCC
Confidence            77777665    32211   1112 23445555210       112 456667889999987653222459999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011669          463 KEDADYLVDVMDYSLSK  479 (480)
Q Consensus       463 ~~~id~~l~~l~~~l~~  479 (480)
                      ++|||.+++.|+++.++
T Consensus       368 ~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          368 IEGVKALTDFMIDFERR  384 (386)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998764

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.62  E-value=3.1e-14  Score=153.65  Aligned_cols=314  Identities=12%  Similarity=0.023  Sum_probs=174.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCC
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g  218 (480)
                      +.....++.+.+++.++.+ ..++++||+++||..++.....  +++.||+.+++|+....+.+...+            
T Consensus       171 ~~~~i~e~e~~lA~~~gae-~~i~v~nGtt~an~~ai~al~~--pGD~VLv~~~~H~S~~~~~~~l~G------------  235 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALVS--NGDLVLFDRNNHKSVYNSALAMAG------------  235 (730)
T ss_dssp             TBTHHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHTTTTC------------
T ss_pred             ChHHHHHHHHHHHHHHCCC-cEEEECCHHHHHHHHHHHHhcC--CCCEEEEcCCchHHHHHHHHHHCC------------
Confidence            3456789999999999754 3466666667999999987543  678899998887665544122222            


Q ss_pred             eeEecCCCCcCCCCC----CChHHH-HHHHHHHHHcc------CCCceEEEE-EcccCCCCcceeCCCChHHHHHHHHHH
Q 011669          219 VHHALNPDPYRGVFG----ADGEMY-AKDVQDLIDFG------TSGHVAGFL-SESIQGVGGIIELAPGYLPAVYKSIKK  286 (480)
Q Consensus       219 ~~~~~~p~~~~~~~~----~d~~~~-~~~le~~i~~~------~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~  286 (480)
                      ...+.++... ..|+    .|.+.. .+.|+++++..      ....+++++ .+| + .+|.+.+    +++|.++|++
T Consensus       236 a~~v~v~~~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n-~~G~v~d----l~~I~~la~~  308 (730)
T 1c4k_A          236 GRPVYLQTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-T-YDGTIYN----AHEVVKRIGH  308 (730)
T ss_dssp             CEEEEECEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-C-TTSEEEC----HHHHHHHHGG
T ss_pred             CEEEEEeCCc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-C-CCCeecC----HHHHHHHHHH
Confidence            1111111100 0111    121111 23347777532      111114444 455 3 4788876    9999999999


Q ss_pred             hCCEEEEcccccC-ccccC--C--CcccccccCCC-cc-ee--eeccccccCcccc-ccccCHHHH---------HhhcC
Q 011669          287 AGGLCIADEVQAG-FARTG--S--HFWGFEAHGVV-PD-IV--TMAKGIGNGIPLG-AVVTTPEIA---------EVLTR  347 (480)
Q Consensus       287 ~gillI~DEv~tg-fgr~G--~--~~~~~~~~~~~-pD-iv--t~sK~~g~G~pig-~v~~~~~~~---------~~l~~  347 (480)
                      ||+++|+||+|.+ ++..+  .  .....+..+.. ++ ++  |++|+++ |++.| +++.+++.+         ..+..
T Consensus       309 ~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~-g~~~gg~I~v~~~~l~g~~~~i~~~~~~~  387 (730)
T 1c4k_A          309 LCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA-GFSQTSQIHKKDSHIKGQLRYCDHKHFNN  387 (730)
T ss_dssp             GBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS-CCTTCEEEEEECGGGTTSTTCCCHHHHHH
T ss_pred             cCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC-CCCCEEEEEecchhhcCcccccCHHHHHH
Confidence            9999999999963 22211  0  01111122332 21 44  5679875 34443 443332211         11111


Q ss_pred             C-CccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHH-hHHhcCcee--eE----------------
Q 011669          348 R-NYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTA-LKDKYGIIG--DV----------------  404 (480)
Q Consensus       348 ~-~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~--~v----------------  404 (480)
                      . ....+.+.++..+++..++++.+..   +++.++..++.+++++.|++ +. .+....  .+                
T Consensus       388 ~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~-g~~v~~p~~~~~~~~~~~~~~~~~~~  466 (730)
T 1c4k_A          388 SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGS-MFRPFVPPVVNGKKWEDGDTEDMANN  466 (730)
T ss_dssp             HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTC-SSEESSCSEETTEEGGGSCHHHHTTC
T ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCC-CeEEcccccccccccccccccccccc
Confidence            0 0122334556666666667776654   45677788888888888876 21 111100  00                


Q ss_pred             ---------------ec--cce-e-----EEEEEec---CCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCC
Q 011669          405 ---------------RG--RGF-L-----LGVEFVT---DRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPP  458 (480)
Q Consensus       405 ---------------~g--~g~-~-----~~i~~~~---~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~  458 (480)
                                     .+  .+. +     +.+....   ....-.........+.+.|.++||.+...+  ...+|++++
T Consensus       467 ~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~--~~~ir~~~s  544 (730)
T 1c4k_A          467 IDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD--LNSILFLMT  544 (730)
T ss_dssp             GGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEEC--SSEEEEECC
T ss_pred             chhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECC--CCeEEEEeC
Confidence                           00  111 1     2222210   000000001124668888999999997654  468999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 011669          459 LCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~l~  478 (480)
                      ..+|+++++.++++|.++.+
T Consensus       545 ~g~t~e~i~~Ll~aL~~i~~  564 (730)
T 1c4k_A          545 PAETPAKMNNLITQLLQLQR  564 (730)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999988764

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.58  E-value=1.5e-13  Score=149.36  Aligned_cols=312  Identities=11%  Similarity=0.035  Sum_probs=178.5

Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCee
Q 011669          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH  220 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~  220 (480)
                      ....++.+.+++.++.+ +.++++||+++||..++.....  +++.||+.+++|+....+. ...+            ..
T Consensus       205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~~--~GD~Vlv~~~~h~s~~~~~-~~~G------------~~  268 (755)
T 2vyc_A          205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACMT--DNDVVVVDRNCHKSIEQGL-MLTG------------AK  268 (755)
T ss_dssp             HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHH-HHHC------------CE
T ss_pred             cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhcC--CCCEEEECCCchHHHHHHH-HHcC------------CE
Confidence            45677788888888654 4566777778999999987643  6788999999886654442 2222            22


Q ss_pred             EecCCCCcCCCCC----CC-hHHHHHHHHHHHHccCC------Cce-EEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669          221 HALNPDPYRGVFG----AD-GEMYAKDVQDLIDFGTS------GHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (480)
Q Consensus       221 ~~~~p~~~~~~~~----~d-~~~~~~~le~~i~~~~~------~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  288 (480)
                      .+.++.... .|+    -+ .....++++++++....      .++ .+++++|  +.+|.+.+    +++|.++|++||
T Consensus       269 ~v~v~~~~~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~  341 (755)
T 2vyc_A          269 PVYMVPSRN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTS  341 (755)
T ss_dssp             EEEECCCBC-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTC
T ss_pred             EEEEeCCCC-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcC
Confidence            221111110 111    10 00016788888864210      112 4555555  35788876    999999999999


Q ss_pred             CEEEEcccccCccccCCCcccccc-cC--CC---cc---eeeeccccccCcc-ccccccCHH---H-HHhhcCC-Ccccc
Q 011669          289 GLCIADEVQAGFARTGSHFWGFEA-HG--VV---PD---IVTMAKGIGNGIP-LGAVVTTPE---I-AEVLTRR-NYFNT  353 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~~~~-~~--~~---pD---ivt~sK~~g~G~p-ig~v~~~~~---~-~~~l~~~-~~~~t  353 (480)
                      +++|+||+|.+.-..+..+..... .+  ..   ++   +.+++|++++ ++ .|+++.+++   + ...+... ....+
T Consensus       342 ~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s  420 (755)
T 2vyc_A          342 DRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHAT  420 (755)
T ss_dssp             SEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBTCCCHHHHHHHHHHTSC
T ss_pred             CEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccC-cCCeeeeeecCcccccCHHHHHHHHHHhCC
Confidence            999999999743111101000111 22  11   11   2357798753 44 455655433   1 1111111 11233


Q ss_pred             CCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHh--------cCce--eeEec--------------
Q 011669          354 FGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDK--------YGII--GDVRG--------------  406 (480)
Q Consensus       354 ~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~--------~~~~--~~v~g--------------  406 (480)
                      .+.|.+.+++..++++.+..   +++.++..++.++++++|+++..+        +..+  ..+.+              
T Consensus       421 ~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (755)
T 2vyc_A          421 TSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPT  500 (755)
T ss_dssp             SSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccc
Confidence            44566777777777877654   367888899999999999887541        1100  01100              


Q ss_pred             -------------------------cc------eeEEEEEecCCCcC--CCCHHHHHHHHHHHHHcCceeeccCcCCCEE
Q 011669          407 -------------------------RG------FLLGVEFVTDRQLK--TPAKAETLYIMDKMKEMGVLVGKGGFYGNVF  453 (480)
Q Consensus       407 -------------------------~g------~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  453 (480)
                                               .|      ..+.+.......+.  .........+.+.|.++||.+...+  .+.+
T Consensus       501 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~--~~~v  578 (755)
T 2vyc_A          501 KLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTT--DFQI  578 (755)
T ss_dssp             HHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEEC--SSEE
T ss_pred             hhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecC--CCeE
Confidence                                     11      11122221100000  0001113567778888999886544  5789


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          454 RITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      |+.+++..|+++++.++++|.++.+
T Consensus       579 ~~~~~~g~t~~~~~~l~~al~~~~~  603 (755)
T 2vyc_A          579 MFLFSMGVTRGKWGTLVNTLCSFKR  603 (755)
T ss_dssp             EEECCTTCCTTTTHHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988753

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.40  E-value=1.8e-11  Score=131.11  Aligned_cols=310  Identities=12%  Similarity=0.074  Sum_probs=177.8

Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCH-HHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCC
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSG-TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT  217 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sG-seA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~  217 (480)
                      +.....++.+++++.++.  +..+|+++| +.||..++.....  +++.||+.+++|.....+ +.+++.          
T Consensus       193 ~~g~i~eaE~~lA~~fGa--~~a~~v~nGts~An~~ai~al~~--pGD~VLv~r~~H~S~~~~-l~lsGa----------  257 (715)
T 3n75_A          193 HSGPHKEAEQYIARVFNA--DRSYMVTNGTSTANKIVGMYSAP--AGSTILIDRNCHKSLTHL-MMMSDV----------  257 (715)
T ss_dssp             TBTHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHH-HHHSCC----------
T ss_pred             CcHHHHHHHHHHHHHhCC--CCceEECcHHHHHHHHHHHHhCC--CCCEEEECCCccHHHHHH-HHHcCC----------
Confidence            345678899999999964  455565555 6999888876543  678888888887554443 333332          


Q ss_pred             CeeEecCCCCcCCCCC----CCh-HHHHHHHHHHHHccCC-Cce-EEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCE
Q 011669          218 GVHHALNPDPYRGVFG----ADG-EMYAKDVQDLIDFGTS-GHV-AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL  290 (480)
Q Consensus       218 g~~~~~~p~~~~~~~~----~d~-~~~~~~le~~i~~~~~-~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  290 (480)
                        ..+.++... ..|+    .+. ....++++++++.... +.+ ++|+++|  +..|.+.+    +++|.++|++++  
T Consensus       258 --~pv~v~~~~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--  326 (715)
T 3n75_A          258 --TPIYFRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--  326 (715)
T ss_dssp             --EEEEECCCB-CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--
T ss_pred             --EEEEEeccc-cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--
Confidence              111111111 1121    100 0016788888875321 111 4666666  66888877    999999998774  


Q ss_pred             EEEcccccCccccCCCcccccc--cCCCccee-----eeccccccCccccccccCHHH-HHhhcCC-CccccCCCcHHHH
Q 011669          291 CIADEVQAGFARTGSHFWGFEA--HGVVPDIV-----TMAKGIGNGIPLGAVVTTPEI-AEVLTRR-NYFNTFGGNPVCT  361 (480)
Q Consensus       291 lI~DEv~tgfgr~G~~~~~~~~--~~~~pDiv-----t~sK~~g~G~pig~v~~~~~~-~~~l~~~-~~~~t~~~~~~~~  361 (480)
                      +|+||+|.+....+..+-+...  .+..+|++     |++|++++--..|++.++.++ .+.+... ....|-+.+++.+
T Consensus       327 livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~  406 (715)
T 3n75_A          327 IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIV  406 (715)
T ss_dssp             EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHH
T ss_pred             EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHH
Confidence            7999999743111211100111  12225643     578998641123566665432 1112211 1234556778888


Q ss_pred             HHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCc-eee------Eec-------------------cce-e-
Q 011669          362 AAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGI-IGD------VRG-------------------RGF-L-  410 (480)
Q Consensus       362 aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~------v~g-------------------~g~-~-  410 (480)
                      ++..++++.++.   +++.+++.++.++++++|+++....+. ...      +.+                   .+. + 
T Consensus       407 AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~  486 (715)
T 3n75_A          407 ASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYL  486 (715)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEE
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccC
Confidence            888888888763   467899999999999999988642110 000      000                   000 0 


Q ss_pred             ----EEEEEecCCCcCC--CCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          411 ----LGVEFVTDRQLKT--PAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       411 ----~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                          +.+....-..+..  ........+.+.|.++||.+--+.  .+.+-+..+...|+++++.++++|.+.
T Consensus       487 Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d--~~~vl~l~s~g~~~~~~~~L~~aL~~~  556 (715)
T 3n75_A          487 DPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG--PYNLLFLFSIGIDKTKALSLLRALTDF  556 (715)
T ss_dssp             CTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE--TTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC--CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence                1111100000000  001123456777888999986654  355667777888999999999998765

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.39  E-value=9.1e-11  Score=117.49  Aligned_cols=291  Identities=13%  Similarity=0.079  Sum_probs=171.3

Q ss_pred             CEEEEeCCHHHHHHHHHHHHHhh--cCCceEEEEcCCcccccccccccccCC-CccccccCCCeeEecCCCCcCCCCCCC
Q 011669          159 KVVFFTNSGTEANELAIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGAD  235 (480)
Q Consensus       159 ~~v~f~~sGseA~~~Alk~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~~~g~~~~~~p~~~~~~~~~d  235 (480)
                      ...|++|++|-++.+++..+...  .+.++||+.+++ |-+...++.+.+.. .|..+...        ++    .++-|
T Consensus       135 ~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~-HKSv~kAliL~Gl~Pv~V~p~~d--------~~----~~~id  201 (501)
T 3hl2_A          135 ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRID-QKSCFKSMITAGFEPVVIENVLE--------GD----ELRTD  201 (501)
T ss_dssp             CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCC-CHHHHHHHHHTTCEEEEECEEEE--------TT----EEEEC
T ss_pred             CcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecch-HHHHHHHHHHcCCeEEEEeeeec--------cc----ccCCC
Confidence            45788888887777777765443  134778876655 55555555555422 22111100        00    11123


Q ss_pred             hHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC
Q 011669          236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV  315 (480)
Q Consensus       236 ~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~  315 (480)
                          .++++++|++...+.+++|+..+....++.+.+    +++|.++|++||+++++||+|.+.-... ..+..+....
T Consensus       202 ----~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~-~~lp~sA~~~  272 (501)
T 3hl2_A          202 ----LKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKC-MHLIQQGARV  272 (501)
T ss_dssp             ----HHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHH-HHHHHHHHHH
T ss_pred             ----HHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhh-hhhHHHHHhc
Confidence                678999998764457888887765443444444    9999999999999999999986432111 0000111222


Q ss_pred             -Ccceeeec--cccccCccccc-cc-c-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHH
Q 011669          316 -VPDIVTMA--KGIGNGIPLGA-VV-T-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSY  386 (480)
Q Consensus       316 -~pDivt~s--K~~g~G~pig~-v~-~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~  386 (480)
                       ..|+++.|  |.+-  .|+|. ++ . .+++++.+... +.++-++.|..  ..+.++..+-.   .++.++..++.++
T Consensus       273 GrAD~vVqS~HK~ll--vpIGG~ii~~~d~e~l~~~~~~-yPGr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~~  347 (501)
T 3hl2_A          273 GRIDAFVQSLDKNFM--VPVGGAIIAGFNDSFIQEISKM-YPGRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFSY  347 (501)
T ss_dssp             SCCCEEEEEHHHHHC--CCSSCEEEEESCHHHHHHHHHT-SCSCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEecccccce--eecCceEEEeCCHHHHHHHHHh-CCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             47888888  6543  34432 33 3 56676665332 22334444432  22333333323   4567778888999


Q ss_pred             HHHHHHHhHHhcC-ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCce---eeccCc-----------C--
Q 011669          387 LKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVL---VGKGGF-----------Y--  449 (480)
Q Consensus       387 l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~---v~~~~~-----------~--  449 (480)
                      |+++|+++...++ .+.+.+.-..-+++.+.....   ........+...|..++|-   +.+.+.           |  
T Consensus       348 L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~---~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~  424 (501)
T 3hl2_A          348 LSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE---HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMS  424 (501)
T ss_dssp             HHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT---TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTT
T ss_pred             HHHHHHHHHHhcChhhcCCCCCceeEEEecccccc---cccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCccc
Confidence            9999999988664 233343333445565543211   1112345667777777653   322211           1  


Q ss_pred             ------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          450 ------GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       450 ------~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                            ..++-+.....++++|||.++++|++++.+
T Consensus       425 h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~  460 (501)
T 3hl2_A          425 HTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA  460 (501)
T ss_dssp             TSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence                  246778878889999999999999999864

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.26  E-value=6.7e-10  Score=112.43  Aligned_cols=307  Identities=12%  Similarity=0.035  Sum_probs=166.7

Q ss_pred             HHHHHHHHhCCCC-CCEEEEeCCHH-HHHHHHHHHHHhhc-CCceEEEEcCCcccccccccccccCCCccccccCCCeeE
Q 011669          145 DFAEALASKMPGN-LKVVFFTNSGT-EANELAIMMARLYT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHH  221 (480)
Q Consensus       145 ~l~e~L~~~~~~~-~~~v~f~~sGs-eA~~~Alk~ar~~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~  221 (480)
                      .+..++.+.++.+ ....+++|++| .++.++|..+|... +.+.||+.+. -|-+...++.+.+.......        
T Consensus       102 ~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~-aHkSv~kAl~l~Gl~p~~v~--------  172 (450)
T 3bc8_A          102 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI-DQKSCFKSMVTAGFEPVVIE--------  172 (450)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECC-CCHHHHHHHHHTTCEEEEEC--------
T ss_pred             HHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECC-cHHHHHHHHHHcCCeeEEEE--------
Confidence            4444455544322 23468999998 66666666677532 2466777766 78777777776653211110        


Q ss_pred             ecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCcc
Q 011669          222 ALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA  301 (480)
Q Consensus       222 ~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfg  301 (480)
                       +.++..  ..+-|    .+.|+++|++...+.+++|+..|.....|.+.+    +++|.++|++||+++++||+|.+.-
T Consensus       173 -~~~~~~--~~~id----~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~  241 (450)
T 3bc8_A          173 -NVLEGD--ELRTD----LKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS  241 (450)
T ss_dssp             -CEEETT--EEECC----HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred             -eeecCc--cCCcC----HHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhh
Confidence             000000  11123    688999997653347888888876655555655    9999999999999999999986532


Q ss_pred             ccCCCcccccccCC-Ccceeeec--cccccCcccccccc-CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhh---
Q 011669          302 RTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD---  374 (480)
Q Consensus       302 r~G~~~~~~~~~~~-~pDivt~s--K~~g~G~pig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~---  374 (480)
                      +...++ ..+.... ..|++++|  |.+......+.+.. +++..+.+... ...+-+.+|.  ...+.++..+-.+   
T Consensus       242 ~~~~~l-~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~-~~g~~s~Sps--L~l~~~l~~~G~~g~~  317 (450)
T 3bc8_A          242 SKCMHL-IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM-YPGRASASPS--LDVLITLLSLGCSGYR  317 (450)
T ss_dssp             HHHHHH-HHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH-SCSCBCSHHH--HHHHHHHHHHHHHHHH
T ss_pred             hhhHhH-HHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHH-hhcCCcccHH--HHHHHHHHHHHHHHHH
Confidence            211000 0011111 46888877  77765555566665 55555544321 1111222332  2222222222222   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhcCc-eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCc---eee------
Q 011669          375 KLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGV---LVG------  444 (480)
Q Consensus       375 ~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v~------  444 (480)
                      ++.++..++.+++++.|+++..+++. +......+.-..+.+..-..   ....+...+.-.+...|+   -+.      
T Consensus       318 ~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~---~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~  394 (450)
T 3bc8_A          318 KLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG---HHDKAVTQLGSMLFTRQVSGARAVPLGNVQ  394 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS---SSSCHHHHHHHHHHHTTCCSCEEECSCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccc---cccCCCceeEEEecCCCCccceeeeccccc
Confidence            23444467788999999988766642 11111111111222211000   000112334444555542   221      


Q ss_pred             -------cc------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          445 -------KG------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       445 -------~~------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                             ..      -.....+-+..++..+++|+++++++|+++++
T Consensus       395 ~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~  441 (450)
T 3bc8_A          395 TVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN  441 (450)
T ss_dssp             EETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence                   10      01235666777788999999999999998764

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.59  E-value=4.1e-06  Score=83.75  Aligned_cols=330  Identities=12%  Similarity=0.064  Sum_probs=164.3

Q ss_pred             CCCHHHHHHHHHHHHh-cc--ccccccC-----ChHHHHHHH-HHHHhCCCCCCE---EEEeCCHHHHHHHHHHHHHhhc
Q 011669          115 HCHPYVVDSIVNQIKR-IQ--HSTVLYL-----NHAIADFAE-ALASKMPGNLKV---VFFTNSGTEANELAIMMARLYT  182 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~-~~--~~~~~~~-----~~~~~~l~e-~L~~~~~~~~~~---v~f~~sGseA~~~Alk~ar~~~  182 (480)
                      +..|.|.+|+-..+.. +.  +...+|+     -+.++.|+. +..++++.+...   =+=..||+.||.++......  
T Consensus        65 ~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~--  142 (490)
T 3ou5_A           65 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--  142 (490)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC--
T ss_pred             cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcC--
Confidence            4567888876554432 11  1111222     233445554 344566655441   12446999999988876654  


Q ss_pred             CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc
Q 011669          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES  262 (480)
Q Consensus       183 ~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep  262 (480)
                      ++++|+.++-.. |....--..+...  +......-+..++++...     .+.....++++++....   +++.||+-.
T Consensus       143 PGD~ilg~~l~~-GGHltHg~~~~~~--~v~~sg~~~~~~~Y~vd~-----~t~~IDyd~~~~~A~~~---kPklIi~G~  211 (490)
T 3ou5_A          143 PHDRIMGLDLPD-GGHLTHGYMSDVK--RISATSIFFESMPYKLNP-----KTGLIDYNQLALTARLF---RPRLIIAGT  211 (490)
T ss_dssp             -CCCEECBC-------------------------------CBCEET-----TTTEECHHHHHHHHHHH---CCSEEEECC
T ss_pred             CCCEEEecccCC-CCcccccccCCCc--ccccccccccccccccCC-----CCCcccHHHHHHHHhhc---CCCeEEECC
Confidence            778888765432 2221100000000  000000001111111100     01111157777777654   567787743


Q ss_pred             cCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccc-cCccccCCCcccccccCCCcceeeec--cccccCccccccccCH
Q 011669          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTP  339 (480)
Q Consensus       263 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~  339 (480)
                            ...+-+--+++++++|++.|++|++|-.| +|+--.|  .+.-. .. ..|+||.+  |.|.| -|-|.|+.++
T Consensus       212 ------SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g--~~psP-~~-~ADvVTtTTHKTLrG-PrGG~Il~~~  280 (490)
T 3ou5_A          212 ------SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAK--VIPSP-FK-HADIVTTTTHKTLRG-ARSGLIFYRK  280 (490)
T ss_dssp             ------SSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT--SSCCG-GG-TCSEEEEESSSTTCS-CSCEEEEEEC
T ss_pred             ------ccCccccCHHHHHHHHhhcccEEEechhhhhhhhccc--ccCCc-cc-cceEEeccccccccC-CCceEEEecc
Confidence                  22233334899999999999999999887 4443333  21111 11 26899876  88864 2555666554


Q ss_pred             ---------------HHHHhhcCCCccccCCCcHHHHHHHHHH-HHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          340 ---------------EIAEVLTRRNYFNTFGGNPVCTAAGHAV-LKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       340 ---------------~~~~~l~~~~~~~t~~~~~~~~aaa~a~-L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                                     ++.+.+....+-+..+++-.-..||.|+ +.....+   ++.+++.++.+.|.+.|.+.  .+.+
T Consensus       281 ~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~--G~~v  358 (490)
T 3ou5_A          281 GVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--GYSL  358 (490)
T ss_dssp             SEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred             ccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC--CCee
Confidence                           3444454433334455554444444433 3322222   45566666666666666554  2332


Q ss_pred             eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------cCCCEEEEeCCCC----CCHHHHHHH
Q 011669          401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------FYGNVFRITPPLC----FTKEDADYL  469 (480)
Q Consensus       401 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~~----~t~~~id~~  469 (480)
                      +..- -...++.+++.....       ......+.|.+.||.+-...       ...+-|||.-|..    ..++|++++
T Consensus       359 vsGg-TdnHlvLvDl~~~g~-------tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~I  430 (490)
T 3ou5_A          359 VSGG-TDNHLVLVDLRPKGL-------DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRV  430 (490)
T ss_dssp             GGGS-CSSSEEEEECGGGTC-------CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred             ecCC-CCceEEEEeccccCC-------CHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHH
Confidence            2110 012245566533221       13455667778899885321       1124699986643    567899888


Q ss_pred             HHHHHHHHh
Q 011669          470 VDVMDYSLS  478 (480)
Q Consensus       470 l~~l~~~l~  478 (480)
                      .+.|.+++.
T Consensus       431 A~~I~~~l~  439 (490)
T 3ou5_A          431 VDFIDEGVN  439 (490)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	480
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	1e-93
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	1e-86
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	1e-84
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	5e-80
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	5e-73
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	6e-70
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	2e-57
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	1e-55
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	1e-20
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	6e-20
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	2e-18
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	2e-13
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	2e-09
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	6e-08
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	3e-07
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	9e-05
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	2e-04
d1fc4a_	401	c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E	5e-04
d1m32a_	361	c.67.1.3 (A:) 2-aminoethylphosphonate transaminase	0.003
d2bkwa1	382	c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe	0.003

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score =  288 bits (737), Expect = 1e-93
 Identities = 117/425 (27%), Positives = 196/425 (46%), Gaps = 6/425 (1%)

Query: 59  SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
           S  E++ +R   +   +  ++  P+     +   ++D  GR YLD  GGIA +  GH HP
Sbjct: 2   SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 59

Query: 119 YVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGN-LKVVFFTNSGTEANELAIM 176
            VV ++  Q+K++ H+    L +    +  E +  K+PG+  K      +G+EA E A+ 
Sbjct: 60  KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 119

Query: 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-WKFNVVQTGVHHALNPDPYRGVFGAD 235
           +AR  T  +  I+   AYHG    T+  T + N +   +     H      P      ++
Sbjct: 120 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 179

Query: 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
            +  A   +   +      +A  + E +QG GG    +P ++  +     + G + IADE
Sbjct: 180 DDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE 239

Query: 296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFG 355
           VQ+G  RT    +  E  GV PD+ T AK I  G PL  V    E+ + +       T+ 
Sbjct: 240 VQSGAGRT-GTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYA 298

Query: 356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
           GNP+   A   VLKV +++ L   A+ +G  LK+ L A+ +K+  IGDVRG G ++ +E 
Sbjct: 299 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIEL 358

Query: 416 VTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY 475
             D     P    T  I+ + ++ G+++   G Y NV RI  PL          ++++  
Sbjct: 359 FEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQ 418

Query: 476 SLSKM 480
              + 
Sbjct: 419 CFDEA 423

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score =  269 bits (688), Expect = 1e-86
 Identities = 127/420 (30%), Positives = 197/420 (46%), Gaps = 38/420 (9%)

Query: 62  EILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
            +L   KT  S     +Y+K  L +V G+   ++D  G  Y+D  GG      GH +P V
Sbjct: 3   ALLEAEKTLDS----GVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEV 58

Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
           V+++  Q + +             +F   L + +P  L  VF  NSGTEANE A+  AR 
Sbjct: 59  VEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA 118

Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEM 238
           +TG    ++    + G   G++  T +  ++  F  +   V       PY  V       
Sbjct: 119 HTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFI----PYNDV------- 167

Query: 239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298
             + ++  +D       A  + E +QG GG+    P +L A  +  ++ G L I DE+Q 
Sbjct: 168 --EALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT 221

Query: 299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358
           G  RTG  F  FE  G+VPDI+T+AK +G G+PLG  V   E+A  + +  +  TFGGNP
Sbjct: 222 GMGRTGKRFA-FEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNP 280

Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
           +  AAG A ++ +++ +L   A  +G +  E+L A+      I +VRG G ++G+E    
Sbjct: 281 LAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPK--IREVRGMGLMVGLELKEK 338

Query: 419 RQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
                       YI    KE  VL  + G    V R  PPL   KED + +V+ +   L+
Sbjct: 339 A---------APYIARLEKEHRVLALQAG--PTVIRFLPPLVIEKEDLERVVEAVRAVLA 387

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  264 bits (675), Expect = 1e-84
 Identities = 104/425 (24%), Positives = 191/425 (44%), Gaps = 31/425 (7%)

Query: 58  PSADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
           P++D+I  +   + +    H     P+ +  GK  YL+D  GR+Y D    I+ V  GHC
Sbjct: 3   PTSDDIFEREYKYGA----HNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHC 58

Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176
           HP +V+++ +Q+ ++  ++  + N+ + ++ E        N   V   N+G EA E A  
Sbjct: 59  HPKIVNALKSQVDKLTLTSRAFYNNVLGEYEE--YITKLFNYHKVLPMNTGVEAGETACK 116

Query: 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG 236
           +AR +      I    A              +   +    + +  + +P  Y G      
Sbjct: 117 LARKWGYTVKGIQKYKAKI---------VFAAGNFWGRTLSAISSSTDPTSYDGFGPFMP 167

Query: 237 EMYA---KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
                   D+  L       +VA F+ E IQG  G++   PGYL  V +   +   L IA
Sbjct: 168 GFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 227

Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN 352
           DE+Q G ART   +   +   V PDIV + K +  G  P+ AV+   +I   +    +F+
Sbjct: 228 DEIQTGLART-GRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFS 286

Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
           T+GGNP+      A L+V++++ L  NA  +G  L+  L  L     ++  VRG+G L  
Sbjct: 287 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLLNA 344

Query: 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV 472
           +     +        +   +  ++++ G+L      +G++ R  PPL   +++    +++
Sbjct: 345 IVIKETK------DWDAWKVCLRLRDNGLLA--KPTHGDIIRFAPPLVIKEDELRESIEI 396

Query: 473 MDYSL 477
           ++ ++
Sbjct: 397 INKTI 401

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score =  252 bits (644), Expect = 5e-80
 Identities = 95/421 (22%), Positives = 177/421 (42%), Gaps = 24/421 (5%)

Query: 59  SADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
           + ++ +     + +    H Y   P+ +   K  +++D N +RY D     ++V  GHCH
Sbjct: 2   TPEDYINNELKYGA----HNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCH 57

Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
           P ++++++NQ K +   +  + +  +      L + +  +  ++  T +        +  
Sbjct: 58  PNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCR 117

Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGE 237
                   ++  +              + ++    +   T    +     +        +
Sbjct: 118 KW----GYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTS----NFGPFAPQFSK 169

Query: 238 MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ 297
           +   D++ L +     +V  F+ E IQG  G+I  +  YL  VY   KK   L +ADEVQ
Sbjct: 170 VPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQ 229

Query: 298 AGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGG 356
            G  RT         + V PD++ + K +  G  P+ AV+   +I  V+    + +T+GG
Sbjct: 230 TGLGRT-GKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGG 288

Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
           NP+  +     L V+  +KL  NA  +G    E L        I+ DVRG+G L  +EF 
Sbjct: 289 NPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFK 348

Query: 417 TDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476
            +           L I  K+KE G++      +    R+TPPLC TKE  D   +++  +
Sbjct: 349 NE-------LVNVLDICLKLKENGLIT--RDVHDKTIRLTPPLCITKEQLDECTEIIVKT 399

Query: 477 L 477
           +
Sbjct: 400 V 400

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score =  235 bits (599), Expect = 5e-73
 Identities = 97/436 (22%), Positives = 164/436 (37%), Gaps = 31/436 (7%)

Query: 61  DEILAKRKTFL-------SPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCC 113
           DEI A  +  +         +   +  +P+     K  Y +D +G RY+D  G      C
Sbjct: 7   DEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAIC 66

Query: 114 GHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173
           GH HP V++++   +++           A+ +    + +    ++++V F NSGTEA   
Sbjct: 67  GHAHPEVIEALKVAMEKGTS---FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMA 123

Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT-GVHHALNPDPYRGVF 232
            + + R YTG + II     YHG+A   +           +  + GV      +      
Sbjct: 124 VLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT--- 180

Query: 233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
                   + V+ L      G +AG + E I G  G I    G+L  + +   +   L +
Sbjct: 181 --TPYNDLEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLV 237

Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLT---RRN 349
            DEV  GF     +    E  GV PD+ T+ K IG G+P+GA     EI +++       
Sbjct: 238 FDEVMTGFRIA--YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMY 295

Query: 350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF 409
              T  GNP+   AG   L+++++         +   L + L A+  + G          
Sbjct: 296 QAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSG 355

Query: 410 LLGVEFVTD-----RQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKE 464
           + G  F           K     +       M E G+ +    F          L  T+E
Sbjct: 356 MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE----AGFTSLAHTEE 411

Query: 465 DADYLVDVMDYSLSKM 480
           D D  +      +S +
Sbjct: 412 DIDATLAAARTVMSAL 427

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score =  227 bits (578), Expect = 6e-70
 Identities = 137/407 (33%), Positives = 203/407 (49%), Gaps = 10/407 (2%)

Query: 82  PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
           P+ +   K  +++D +GR  LD   G  +   GHCHP +V  I     ++ H     L+ 
Sbjct: 24  PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83

Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201
            + D A  LA+  P  L      ++G E+NE AI MA+L TG  +I+    ++HG     
Sbjct: 84  PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 143

Query: 202 MGATAQSN-WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL----IDFGTSGHVA 256
             AT  +          G      P  YR  F  +G        D     ID  +SG++A
Sbjct: 144 ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 203

Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV 316
            F++E I   GGIIEL  GY+ A+ +  +  G L I DE Q G  RTG+ F      GV 
Sbjct: 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR-DGVT 262

Query: 317 PDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGHAVLKVIQKD 374
           PDI+T++K +G G+PL A+VT+  I E      Y    T   +P+  A G  VL V+Q+D
Sbjct: 263 PDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD 322

Query: 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMD 434
            L   A+V+G  L+  L  L +++  IGDVRGRG LLGVE V DR+ K PA      I  
Sbjct: 323 GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITR 382

Query: 435 KMKEMGVLVG--KGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
           +   +G+ +   +    G VFRI PPL  ++++ D  + ++  ++ +
Sbjct: 383 ECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  195 bits (495), Expect = 2e-57
 Identities = 86/477 (18%), Positives = 151/477 (31%), Gaps = 64/477 (13%)

Query: 48  FDYSPP----PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLD 103
           FDY  P       GP + E++ +     +    H      N  + +  YL D +G R LD
Sbjct: 1   FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHF---FCNYEESRGNYLVDVDGNRMLD 57

Query: 104 AFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-----AIADFAEALASKMPGNL 158
            +  I+++  G+ HP +V  +              L        +    E+L S  P  +
Sbjct: 58  LYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGM 117

Query: 159 KVVFFTNSGTEANELAIMMARLY--------------------------TGCNDIISLRN 192
             +     G+ +NE A     ++                               I+S   
Sbjct: 118 SQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMG 177

Query: 193 AYHGNAAGTMGATAQS-------NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245
           A+HG   G +  T                +          + +      +     ++V+D
Sbjct: 178 AFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVED 237

Query: 246 LIDFGTSGH--VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV-QAGFAR 302
           LI         VAG + E IQ  GG    +  +   +    +K G   + DEV   G + 
Sbjct: 238 LIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST 297

Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA 362
                          D++T +K +  G         P     +      +      +   
Sbjct: 298 GKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEV 357

Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTDRQL 421
                   I+++ L +NA   G  L   L  L+ +Y   I  VRGRG     +       
Sbjct: 358 INI-----IKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDT------ 406

Query: 422 KTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS 478
             P ++    ++   +  GV++G  G      R  P L F    A   +++    L+
Sbjct: 407 --PDESIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDILA 459

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score =  189 bits (480), Expect = 1e-55
 Identities = 96/421 (22%), Positives = 164/421 (38%), Gaps = 30/421 (7%)

Query: 75  LFHLYS------KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI 128
           + H ++          VV  +   L   +GRR +D          G+ HP +  ++ +QI
Sbjct: 13  ILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQI 72

Query: 129 KRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT----- 182
             + H     + HA A +    L +  P  L+ VF  +SG+ A E+A+ MA  Y      
Sbjct: 73  DAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE 132

Query: 183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKD 242
                ++ RN YHG+  G M      N   ++ +  +   L     +     + +     
Sbjct: 133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMV 192

Query: 243 VQDLIDFGTSGHVAGFLSESIQ-GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
               +       +A  + E I  G GG+    P +L  + K   + G L IADE+  GF 
Sbjct: 193 GFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG 252

Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR-----NYFNTFGG 356
           RTG  F    A      +       G  + L A +TT E+AE ++        +  TF G
Sbjct: 253 RTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMG 312

Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
           NP+  AA +A L +++    Q     +   L+E+L   +D   ++ DVR  G +  VE  
Sbjct: 313 NPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVETT 371

Query: 417 TDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS 476
               +          +     E GV +     +G +  + PP     +    L   ++ +
Sbjct: 372 HPVNMAA--------LQKFFVEQGVWI---RPFGKLIYLMPPYIILPQQLQRLTAAVNRA 420

Query: 477 L 477
           +
Sbjct: 421 V 421

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 91.9 bits (227), Expect = 1e-20
 Identities = 53/439 (12%), Positives = 116/439 (26%), Gaps = 74/439 (16%)

Query: 92  YLFDENGRRYLDAFGGIATVCCGHCHPYV---VDSIVNQIKRIQHSTVLYLNHAIAD--- 145
                  R       G+          ++    DS    + +   + ++  + A +    
Sbjct: 16  KRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRS 75

Query: 146 ---FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHG 196
               AE++ +      +    T+ G  A ++ I +             + +++  N +  
Sbjct: 76  YYALAESVKNIF--GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133

Query: 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256
               T G +  +          V+     D     +   G    + ++  I+     +V 
Sbjct: 134 T---TQGHSQINGCTVRN----VYIKEAFDTG-VRYDFKGNFDLEGLERGIEEVGPNNVP 185

Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGSHFWGFEAHG 314
             ++       G   ++   L A+Y   KK     + D  +              ++   
Sbjct: 186 YIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT 245

Query: 315 V---------VPDIVTMAKGIGNGIPLGAVVTT---PEIAEVLTRRNYFNTFGGNP---- 358
           +           D++ M+      +P+G ++              R       G P    
Sbjct: 246 IEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGG 305

Query: 359 ---VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY----GIIGDVRGRGFLL 411
                       L                 YL + L  +        G    V     L 
Sbjct: 306 LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLP 365

Query: 412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG---------------NVFRIT 456
            +      Q    A A  LY     K  G+   + G +                 + R+T
Sbjct: 366 HIPA---DQFPAQALACELY-----KVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLT 417

Query: 457 PP-LCFTKEDADYLVDVMD 474
            P   +T+   D++++   
Sbjct: 418 IPRATYTQTHMDFIIEAFK 436

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 90.0 bits (222), Expect = 6e-20
 Identities = 51/373 (13%), Positives = 103/373 (27%), Gaps = 50/373 (13%)

Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHG 196
           +    D  +            +   + G  A  +   +   Y    G        + +H 
Sbjct: 74  SRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHF 131

Query: 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256
           +                V +         D         G+   K +++ I    + ++ 
Sbjct: 132 DTTAAHVELNGCKAINIVTEKAFDSETYDDW-------KGDFDIKKLKENIAQHGADNIV 184

Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-----FWGFE 311
             +S       G   ++   L  VY+  K+ G   + D  +              +    
Sbjct: 185 AIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT 244

Query: 312 AHGVVPDIV------TMAKGIGNGIPLGAVVTTPEIAE-------VLTRRNYFNTFGGNP 358
              V+ D+       TM+      + +G +V   +  E              F T+GG  
Sbjct: 245 IKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLA 304

Query: 359 -VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT 417
               AA    L+   +++  +       YL +RL        I     G    +  + + 
Sbjct: 305 GRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIP--IQYPTGGHAVFVDCKKLV 362

Query: 418 DRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---------------GNVFRIT-PPLCF 461
            +       A+ + I     E GV   + G +                   R+T     +
Sbjct: 363 PQIPGDQFPAQAV-INALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVY 421

Query: 462 TKEDADYLVDVMD 474
           T +  DY+ D + 
Sbjct: 422 TNDHMDYIADALI 434

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 83.7 bits (205), Expect = 2e-18
 Identities = 39/361 (10%), Positives = 84/361 (23%), Gaps = 33/361 (9%)

Query: 114 GHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173
               P V  ++V        +     +   A        ++      VF   +GT AN L
Sbjct: 13  AGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFC-EIFERDVEVFLVPTGTAANAL 69

Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG 233
            +       G        +  +                      G        P   +  
Sbjct: 70  CLSAMTPPWGNIYCHPASHINNDEC-----------GAPEFFSNGAKLMTVDGPAAKLDI 118

Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
                  ++    +       V+   +  +  +  +       + A+    K +      
Sbjct: 119 VRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD-----EIEAIGDVCKSSSLGLHM 173

Query: 294 DEVQAGFARTGSHFWGFEAHGVV-PDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN 352
           D  +   A         E       D ++        +   A+V                
Sbjct: 174 DGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKR 233

Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
               +         +   +  D    NA    +  +     L+   G+         +L 
Sbjct: 234 AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILF 293

Query: 413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDV 472
               +              ++D + + G       +  NV R       T ED D+L++ 
Sbjct: 294 CRLDSA-------------MIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQ 340

Query: 473 M 473
           +
Sbjct: 341 V 341

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 69.0 bits (167), Expect = 2e-13
 Identities = 39/345 (11%), Positives = 83/345 (24%), Gaps = 31/345 (8%)

Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
            V   +  I +     A       +   F  SGT  N+++IM          + +  + +
Sbjct: 28  DVYGEDPTINELERLAAETF--GKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIF 85

Query: 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
                              +           DP                           
Sbjct: 86  WYEVGAMA------VLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFP-----------R 128

Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
            +    E+     G   +    +  +    K+ G     D  +   A   S     E  G
Sbjct: 129 TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG 188

Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD 374
               ++              VV   +  E   +       G       A   ++ + +  
Sbjct: 189 YADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV 248

Query: 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMD 434
                 H    +L  +L  +        DV+    +L  +           K      ++
Sbjct: 249 DRLKEDHENARFLALKLKEIGYSV-NPEDVKTNMVILRTD---------NLKVNAHGFIE 298

Query: 435 KMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
            ++  GVL           R+      ++ D +  +++ +    K
Sbjct: 299 ALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 341

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score = 56.9 bits (135), Expect = 2e-09
 Identities = 41/359 (11%), Positives = 81/359 (22%), Gaps = 34/359 (9%)

Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI 175
            HP ++D +               +   A  A  +   +      V F + GT+ N +A 
Sbjct: 12  MHPKILDLMARDNM--TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 69

Query: 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD 235
            +                            A      +  +TG   A             
Sbjct: 70  SL-------------------ALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDG 110

Query: 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
               A     L +  +   V   L           +     L  +  S K+ G     D 
Sbjct: 111 KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDG 170

Query: 296 V-QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTF 354
              A    +  +         + D+  +      G+   A++   +  +   R       
Sbjct: 171 ARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRG 230

Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
                    G     +++ +                   L+   GI          L   
Sbjct: 231 ALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPI 289

Query: 415 FVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVM 473
                          L   +      V   K G    + R+       +++    V+V+
Sbjct: 290 L-------ENTMIAEL--NNDFDMYTVEPLKDG--TCIMRLCTSWATEEKECHRFVEVL 337

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 52.6 bits (125), Expect = 6e-08
 Identities = 42/343 (12%), Positives = 85/343 (24%), Gaps = 28/343 (8%)

Query: 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198
           +        E+   ++  N+  +    S   +  L +  AR   G N +I    ++    
Sbjct: 111 MYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI 170

Query: 199 AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF 258
                           V  G    +  +        + E+  +             +  F
Sbjct: 171 KAVSFVGMNMRL-VETVLDGDRVYVPVEDIENAIKKEIELGNR-------PCVLSTLTFF 222

Query: 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVP 317
              +   +  I ++            +      I +   A               + V  
Sbjct: 223 PPRNSDDIVEIAKIC-----------ENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDA 271

Query: 318 DIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA-AGHAVLKVIQKDKL 376
            + +  K +   I  G V +T          +Y       PV         +      +L
Sbjct: 272 VVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLEL 331

Query: 377 QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYI---- 432
             N       L E L  L  K G             +   +D  ++  AK   L +    
Sbjct: 332 VKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDP-VEIAAKLYNLRVTGPR 390

Query: 433 -MDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMD 474
            + K    G        + +   +   +    ED    V  ++
Sbjct: 391 GIKKTDHFGNCYLGTYTH-DYIVMNAAIGVRTEDIVNSVSKLE 432

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (119), Expect = 3e-07
 Identities = 36/391 (9%), Positives = 85/391 (21%), Gaps = 47/391 (12%)

Query: 114 GHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173
            H      D    Q K    S +  + +++      LA  +       F     T  +  
Sbjct: 70  IHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAG-VHSV-ASCFVVPMATGMSLT 127

Query: 174 AIMMARLYTGCND--IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV 231
              +   +       II  R          + A  +               +        
Sbjct: 128 LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEP------------VVIENVLEGDE 175

Query: 232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC 291
              D +     +Q+L         +            + +     L  +           
Sbjct: 176 LRTDLKAVEAKIQELGPEHILCLHSTTAC----FAPRVPD----RLEELAVICANYDIPH 227

Query: 292 IADEVQAGFARTGSHF--WGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTP-EIAEVLTRR 348
           + +      +    H    G     +   + ++ K     +    +        + +++ 
Sbjct: 228 VVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM 287

Query: 349 NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGR 407
                     +        L      KL      +  YL  +L  L + +   +      
Sbjct: 288 YPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN 347

Query: 408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------------------F 448
              L +   T       A  +   ++   +  G      G                   +
Sbjct: 348 PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNY 407

Query: 449 YGNVFRITPPLCFTKEDADYLVDVMDYSLSK 479
                     +    +D D  +  +D  L+ 
Sbjct: 408 PCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 438

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (99), Expect = 9e-05
 Identities = 43/330 (13%), Positives = 73/330 (22%), Gaps = 29/330 (8%)

Query: 163 FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA 222
            T   +EA  L  M  +         + +     N         Q  W        V   
Sbjct: 120 NTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG---PVQICWHKFARYWDVELR 176

Query: 223 LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282
             P     +      M  K + +  D  T G V  F             L        ++
Sbjct: 177 EIP-----MRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLH--DALDKFQ 229

Query: 283 SIKKAGGLCIADEVQAGFA---RTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTP 339
           +          D    GF          W F    V     +  K     +  G V+   
Sbjct: 230 ADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRD 289

Query: 340 EIAEVLTRRNYFNTFGGN-----------PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLK 388
           E A         +  GG                 A +     + ++      +       
Sbjct: 290 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAA 349

Query: 389 ERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF 448
                +           GR            +           + ++++  G  V     
Sbjct: 350 YLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTL 409

Query: 449 YGN-----VFRITPPLCFTKEDADYLVDVM 473
            G      V RI     F  + A+ L++  
Sbjct: 410 GGEATDIVVMRIMCRRGFEMDFAELLLEDY 439

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 45/347 (12%), Positives = 88/347 (25%), Gaps = 43/347 (12%)

Query: 159 KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG 218
           K +  T+ G  A  L      L       ++    +           A        V   
Sbjct: 91  KHIVPTHQGRGAENLLSQ---LAIKPGQYVAGNMYFTTTRFHQEKNGA------TFVDIV 141

Query: 219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLP 278
              A +           G++    +  LI    + ++A         + G   ++   + 
Sbjct: 142 RDEAHDA---SLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMR 198

Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP-----------DIVTMAKGIG 327
           AV++     G     D  +                 V             D  TM+    
Sbjct: 199 AVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKD 258

Query: 328 NGIPLGAVVTT--PEIAE---VLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHV 382
             + +G  +     E+      L          G           + + +  + +   H 
Sbjct: 259 CLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHR 318

Query: 383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF----VTDRQLKTPAKAETLYIMDKMKE 438
           V           +    I+    G    L        +T  Q    + A ++Y+   ++ 
Sbjct: 319 VKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRS 378

Query: 439 MG---VLVGKGGFYG-------NVFRITPPLC-FTKEDADYLVDVMD 474
           M    V  G+    G          R+T P   +T    D + D + 
Sbjct: 379 MERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGII 425

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 60/355 (16%), Positives = 102/355 (28%), Gaps = 36/355 (10%)

Query: 138 YLNHA-----IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN 192
           YL  A     IA     + S   G   V F   +     EL   +A    G  D I   +
Sbjct: 55  YLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL-GMEDAILYSS 113

Query: 193 AYHGNAAGTMGATAQSNWKFN--VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250
            +  N           +   +  +    +   +     +    A+ +M   + +      
Sbjct: 114 CFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEARE 173

Query: 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF--- 307
                    ++ +  + G+I      L  V     K   L + D+  A      +     
Sbjct: 174 AGARHVLIATDGVFSMDGVIA----NLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSH 229

Query: 308 WGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR--RNYFNTFGGNPVCTAAGH 365
              +  G V  I         G   G      E+ E L +  R Y  +    P   AA  
Sbjct: 230 EYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASI 289

Query: 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA 425
            VL++++           GS L++RL A   ++       G         +    L    
Sbjct: 290 KVLEMVEA----------GSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGDAV 339

Query: 426 KAETLYIMDKMKEMGVLVGKGGFYGNV------FRITPPLCFTKEDADYLVDVMD 474
            A       ++++ G+ V  G FY  V       R       T E     V+   
Sbjct: 340 VA--QKFARELQKEGIYVT-GFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFT 391

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 35/354 (9%), Positives = 66/354 (18%), Gaps = 45/354 (12%)

Query: 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198
           +                     V    SG+ A E  +  A        I+S         
Sbjct: 35  VEQIRQQLTALA--TASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGA--- 89

Query: 199 AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF 258
                              G+ H                    +    I      H    
Sbjct: 90  ----------RMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHS--- 136

Query: 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318
                             +  V     + G   I D + +              + +   
Sbjct: 137 ---------ETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSA 187

Query: 319 IVTMAKGIGNGI--------------PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAG 364
              +    G                      +        +   +    F        A 
Sbjct: 188 NKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAF 247

Query: 365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424
              LK + K+      H      +  L A     G    +        +           
Sbjct: 248 AQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFY---SPED 304

Query: 425 AKAETLYIMDKMKEMGVLVGKGGFY-GNVFRITPPLCFTKEDADYLVDVMDYSL 477
            +        ++KE G ++  G     + FRI         D   L+  +  ++
Sbjct: 305 PQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM 358

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 6/54 (11%), Positives = 14/54 (25%)

Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH 195
            + +      S      +      SGT   ++      L    N  + + +   
Sbjct: 41  VLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGT 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	480
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	100.0
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	100.0
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	100.0
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.97
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.97
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.97
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.95
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.95
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.95
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.95
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.95
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.95
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.95
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.95
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.94
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.94
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.94
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.94
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.94
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.93
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.93
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.93
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.92
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.92
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.92
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.91
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.9
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.9
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.88
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.86
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.86
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.86
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.85
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.85
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.85
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.85
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.84
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.84
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.83
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.82
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.82
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.8
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.79
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.79
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.78
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.76
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.74
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.74
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.74
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.73
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.73
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.73
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.68
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.54
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.53
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.52
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.51
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.47
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.46
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.45
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.44
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.43
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.41
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.4
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.39
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.38
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.37
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.34
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.3
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.26
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.24
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.21
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.2
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.02
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.0
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.95
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	98.75
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.69
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.64

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.9e-77  Score=608.03  Aligned_cols=416  Identities=29%  Similarity=0.471  Sum_probs=362.2

Q ss_pred             CHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-cc
Q 011669           59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VL  137 (480)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~  137 (480)
                      ++++++++++++++.++..  ..|+++++|+|+||||.|||+||||++|+++++|||+||+|++|+.+|++++.|.. ..
T Consensus         2 ~~~~l~~r~~~~~~~g~~~--~~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~   79 (425)
T d1sffa_           2 SNKELMQRRSQAIPRGVGQ--IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV   79 (425)
T ss_dssp             CHHHHHHHHHHHSCTTBCC--SEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT
T ss_pred             chHHHHHHHHHhcCCCCCC--CCCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCccccc
Confidence            4678999999998876543  34899999999999999999999999999999999999999999999999987654 34


Q ss_pred             cCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC
Q 011669          138 YLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  216 (480)
                      +.++...+++++|.+.+|.+ .++++|++|||||++.|+|+||.+++|.+||+++++|||++.+++++++..........
T Consensus        80 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~  159 (425)
T d1sffa_          80 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  159 (425)
T ss_dssp             EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             ccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcc
Confidence            56889999999999999865 57899999999999999999999999999999999999999999999876544333211


Q ss_pred             ---CCeeEecCCCCcCCCCCCChHHHHHHHHHHHH-ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          217 ---TGVHHALNPDPYRGVFGADGEMYAKDVQDLID-FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       217 ---~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~-~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                         ......++|......   .........++.+. ....+++++||+||+|+++|+++++++||++|+++|+|||++||
T Consensus       160 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI  236 (425)
T d1sffa_         160 LMPGHVYRALYPCPLHGI---SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI  236 (425)
T ss_dssp             CCCSSEEEECCCBGGGTB---CHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred             cccCCccccCCccccccc---cchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEE
Confidence               222333333222211   11111122222222 23356899999999999999999999999999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ  372 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~  372 (480)
                      +|||||||||+| .+|+++++|+.|||+|+||+++||+|+|++++++++++.+....+++||++||++|+|++++|++++
T Consensus       237 ~DEV~tG~gR~g-~~~a~~~~gv~PDi~~~gK~l~gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~  315 (425)
T d1sffa_         237 ADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE  315 (425)
T ss_dssp             EECTTTTTTTTS-SSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             eccccccCCCcc-hhhHHHhcCCCccceecccccCCCcceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            999999999999 8999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCE
Q 011669          373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNV  452 (480)
Q Consensus       373 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~  452 (480)
                      ++++.+++++++++++++|+++.++++.+.+++|.|+|++++|..+.....++......+.+.|+++||++.+++..++.
T Consensus       316 ~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~  395 (425)
T d1sffa_         316 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNV  395 (425)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCE
T ss_pred             HhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCE
Confidence            99999999999999999999999999999999999999999998776666677777888999999999999988877899


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          453 FRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       453 iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      +||+||+++|++|||+++++|+++++++
T Consensus       396 i~~~PpL~it~~eid~~l~~l~~al~ei  423 (425)
T d1sffa_         396 LRILVPLTIEDAQIRQGLEIISQCFDEA  423 (425)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999763

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=100.00  E-value=8e-75  Score=593.54  Aligned_cols=416  Identities=33%  Similarity=0.520  Sum_probs=359.9

Q ss_pred             HHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCCh
Q 011669           62 EILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH  141 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~  141 (480)
                      .+..+.++|+......  ..|++|++|+|+||||.|||+||||.+|+++++|||+||+|++|+++|++++.|....+.++
T Consensus         6 ~~~~~~~~~~~~~~~~--~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~   83 (431)
T d1zoda1           6 TFWRNARHHLVRYGGT--FEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR   83 (431)
T ss_dssp             HHHHHHHHHCCCCSSC--CCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCH
T ss_pred             HHHHhhHHHhhccCCC--CCCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccccccccH
Confidence            5666677777553221  13899999999999999999999999999999999999999999999999998876777899


Q ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC-CCee
Q 011669          142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-TGVH  220 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~-~g~~  220 (480)
                      ...+|+++|++..+.++++|+|++|||||||.|||+||.+++|++|+.|+++|||++.++++++....+....+. .+..
T Consensus        84 ~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~  163 (431)
T d1zoda1          84 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSF  163 (431)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEE
T ss_pred             HHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCce
Confidence            999999999999988899999999999999999999999999999999999999999999999876544433333 5677


Q ss_pred             EecCCCCcCCCCCC----ChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc
Q 011669          221 HALNPDPYRGVFGA----DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (480)
Q Consensus       221 ~~~~p~~~~~~~~~----d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  296 (480)
                      .++.+..++..+..    +....++.+++.+....+++++|||+||+|+++|.+++|++|+++|+++|++||++||+|||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV  243 (431)
T d1zoda1         164 AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEA  243 (431)
T ss_dssp             EECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred             eeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccc
Confidence            77666655544321    12223444555554445679999999999999999999999999999999999999999999


Q ss_pred             ccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC--CCccccCCCcHHHHHHHHHHHHHhhhh
Q 011669          297 QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR--RNYFNTFGGNPVCTAAGHAVLKVIQKD  374 (480)
Q Consensus       297 ~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~--~~~~~t~~~~~~~~aaa~a~L~~i~~~  374 (480)
                      ||||||+| .+|+++++|+.||++|+||+++||+|++++++++++++.+..  ..+++||++||++|+|+.++|++++++
T Consensus       244 ~tG~gRtG-~~~~~~~~gv~PDi~~~gK~l~gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~  322 (431)
T d1zoda1         244 QTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD  322 (431)
T ss_dssp             TTTTTTTS-SSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred             cccccccc-cccccccCCCCcchhccccccccccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhh
Confidence            99999999 899999999999999999999999999999999998876643  347899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec--cCcCCCE
Q 011669          375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK--GGFYGNV  452 (480)
Q Consensus       375 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~--~~~~~~~  452 (480)
                      ++.+++.++++++++.+.++..+++.+.++||.|+|++++|+.+..+..+.......+.+.|+++|++...  .+..+++
T Consensus       323 ~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~  402 (431)
T d1zoda1         323 GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGV  402 (431)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCE
T ss_pred             hhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCE
Confidence            99999999999999999999999999999999999999999877666566656677889999999986432  2334689


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          453 FRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       453 iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      |||+||+++|++|||+++++|+++|+++
T Consensus       403 i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         403 FRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999863

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-73  Score=575.05  Aligned_cols=390  Identities=26%  Similarity=0.494  Sum_probs=344.6

Q ss_pred             CCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 011669           58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL  137 (480)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~  137 (480)
                      |++++++++..+|..++   +++.|++|++|+|+||||.|||+||||++|+++++|||+||+|++|+++|++++.+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~---~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~   79 (404)
T d2byla1           3 PTSDDIFEREYKYGAHN---AHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRA   79 (404)
T ss_dssp             CCHHHHHHHHHHHBCSC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTT
T ss_pred             CcHHHHHHHHHHhccCC---CCCCCceEEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcccc
Confidence            68899999999997654   456699999999999999999999999999999999999999999999999998776655


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc--------CCceEEEEcCCcccccccccccccCCC
Q 011669          138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--------GCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       138 ~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~--------~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      +.+....++++.+.+..  +.++++|++|||||++.|+|+||.++        ++.+++.+.++|||.+.++++.++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~--~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~  157 (404)
T d2byla1          80 FYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPT  157 (404)
T ss_dssp             EEESSHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHH
T ss_pred             cccchHHHHHHhhhhcc--cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcc
Confidence            66677778888888776  45789999999999999999999865        467899999999999999999988665


Q ss_pred             ccccccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh
Q 011669          210 WKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA  287 (480)
Q Consensus       210 ~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  287 (480)
                      ++....+  .++..++++         |    ++++++.++   .+++++||+||+|+++|.++++++||++|+++|++|
T Consensus       158 ~~~~~~p~~~~~~~~p~~---------d----~~~l~~~l~---~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~  221 (404)
T d2byla1         158 SYDGFGPFMPGFDIIPYN---------D----LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH  221 (404)
T ss_dssp             HHTTSCSCCTTEEEECTT---------C----HHHHHHHHT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCeeEeccc---------C----HHHHHHhcC---CCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhc
Confidence            5433322  455555432         3    577888886   358999999999999999999999999999999999


Q ss_pred             CCEEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHH
Q 011669          288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA  366 (480)
Q Consensus       288 gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a  366 (480)
                      |++||+|||||||||+| .+|+++++|+.|||+||||+++|| +|+|++++++++++.+....+++||++||++|+++++
T Consensus       222 g~llI~DEV~tGfgR~G-~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a  300 (404)
T d2byla1         222 QVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIA  300 (404)
T ss_dssp             TCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHH
T ss_pred             CeEEEeecccccccccc-ccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHH
Confidence            99999999999999999 899999999999999999999998 8999999999999999988899999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc
Q 011669          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG  446 (480)
Q Consensus       367 ~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  446 (480)
                      +|+.++++++.+++++++++++++|.++.  .+.+.++||.|+|+++++......      ....+.+.|+++||++.+.
T Consensus       301 ~L~~i~~~~l~~~~~~~g~~l~~~l~~l~--~~~i~~vRg~Gl~~~i~~~~~~~~------~~~~~~~~l~~~Gvl~~~~  372 (404)
T d2byla1         301 ALEVLEEENLAENADKLGIILRNELMKLP--SDVVTAVRGKGLLNAIVIKETKDW------DAWKVCLRLRDNGLLAKPT  372 (404)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHTSC--TTTEEEEEEETTEEEEEECCCSSC------CHHHHHHHHHHTTEECEEE
T ss_pred             HHHHHHhcCchhhhhHhhHHHHHHHHhhc--cccceeeeecccEEEEEEecCCch------hHHHHHHHHHhCCeEEecC
Confidence            99999999999999999999999999984  367899999999999998654321      2456888999999999875


Q ss_pred             CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          447 GFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       447 ~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +  ++++||+||+++|++|||+++++|+++|++
T Consensus       373 ~--~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         373 H--GDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             E--TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             C--CCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence            4  689999999999999999999999999875

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.2e-73  Score=568.77  Aligned_cols=384  Identities=32%  Similarity=0.525  Sum_probs=341.3

Q ss_pred             HHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC
Q 011669           61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN  140 (480)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~  140 (480)
                      +++++..+.+....   |.+.|++|+||+|+||||.|||+||||.+|+++++|||+||+|++|+++|++++.+....+.+
T Consensus         2 ~~~~~~~~~~~~~~---y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~   78 (387)
T d1vefa1           2 RALLEAEKTLDSGV---YNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT   78 (387)
T ss_dssp             HHHHHHHHHHBCSC---SCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCC
T ss_pred             hhHHhhhhhccCCC---CCCCCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccCC
Confidence            35677666665443   456799999999999999999999999999999999999999999999999998776666778


Q ss_pred             hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC--CC
Q 011669          141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TG  218 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g  218 (480)
                      +...++++++.+..+...++|+|++||+||||.|+|+||.++++.+|+.++++|||++.+++++++.+.++....+  .+
T Consensus        79 ~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~  158 (387)
T d1vefa1          79 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEP  158 (387)
T ss_dssp             HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSC
T ss_pred             chHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCC
Confidence            9999999999999988888999999999999999999999999999999999999999999999986654433222  34


Q ss_pred             eeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc
Q 011669          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA  298 (480)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t  298 (480)
                      +.+++++         |    .+.|++.++    +++++||+||+|+++|.++++++||++|+++|+|||++||+|||+|
T Consensus       159 ~~~~p~~---------d----~~~l~~~~~----~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t  221 (387)
T d1vefa1         159 VEFIPYN---------D----VEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT  221 (387)
T ss_dssp             EEEECTT---------C----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             ceEeCCC---------C----HHHHHHhcC----CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEeccccc
Confidence            4454432         3    566777764    5899999999999999999999999999999999999999999999


Q ss_pred             CccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHH
Q 011669          299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN  378 (480)
Q Consensus       299 gfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~  378 (480)
                      ||||+| .+|+++++|+.||++|+||+++||+|++++++++++++.+....+++||++||++|++++++|+.++++++.+
T Consensus       222 GfgR~G-~~~~~~~~~v~PDi~~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~  300 (387)
T d1vefa1         222 GMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWE  300 (387)
T ss_dssp             TTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccCccC-CCcccccCCcCCceeeecccCCCCccccccccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccc
Confidence            999999 8999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCC
Q 011669          379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPP  458 (480)
Q Consensus       379 ~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~  458 (480)
                      ++++++++++++|+++.  .+.+.++|+.|+|+++++..+.         ...+.+.++++|+++.+.+  ++.+|++||
T Consensus       301 ~v~~~g~~l~~~L~~l~--~~~v~~vrg~Gl~~~ie~~~~~---------~~~~~~~~~~~g~l~~~~g--~~~ir~~Pp  367 (387)
T d1vefa1         301 RAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEKA---------APYIARLEKEHRVLALQAG--PTVIRFLPP  367 (387)
T ss_dssp             HHHHHHHHHHHHHHTSC--CTTEEEEEEETTEEEEEESSCS---------HHHHHHHHHHHCEECEESS--TTEEEECCC
T ss_pred             hHhhhhHHHHHHHHhcC--CCceEEEeecceEEEEEEeCCc---------hHHHHHHHHHCCCeEEecC--CCEEEEECC
Confidence            99999999999999884  4678899999999999995431         3456777888999887765  689999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 011669          459 LCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~l~  478 (480)
                      +++|++|||+++++|+++|.
T Consensus       368 l~it~~~ld~~~~~i~~aLS  387 (387)
T d1vefa1         368 LVIEKEDLERVVEAVRAVLA  387 (387)
T ss_dssp             TTCCHHHHHHHHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999873

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-70  Score=559.07  Aligned_cols=402  Identities=25%  Similarity=0.356  Sum_probs=337.4

Q ss_pred             HHHHHHhhhcCCccccc-cCCCeE-EEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc-ccc
Q 011669           62 EILAKRKTFLSPSLFHL-YSKPLN-VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VLY  138 (480)
Q Consensus        62 ~~~~~~~~~~~~~~~~~-~~~p~~-~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~~  138 (480)
                      +.+..+++|+++..... ...|+. +++|+|+||||.|||+||||.+|+++++|||+||+|++|+++|++++.|.. ..+
T Consensus         4 ~~~~~d~~h~~~p~~~~~~~~p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~   83 (429)
T d1s0aa_           4 DDLAFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGI   83 (429)
T ss_dssp             HHHHHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSE
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCc
Confidence            34457777887654332 234564 899999999999999999999999999999999999999999999987754 356


Q ss_pred             CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhc-----CCceEEEEcCCcccccccccccccCCCcccc
Q 011669          139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       139 ~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      .++...++++++.+..|.++++|+|++||+||+|.|+|++|.++     ++.+||+++++|||.+.+++++++...+...
T Consensus        84 ~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~  163 (429)
T d1s0aa_          84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHS  163 (429)
T ss_dssp             ECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGG
T ss_pred             cchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCcccccc
Confidence            68899999999999999889999999999999999999999874     3568999999999999999999986544433


Q ss_pred             ccC---CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccC-CCCcceeCCCChHHHHHHHHHHhCC
Q 011669          214 VVQ---TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ-GVGGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       214 ~~~---~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~-~~~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                      ...   ......+.+....... .+ ....+++++.+... ++++++||+||++ +.||.+++|++|+++|+++|++||+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~-~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gi  240 (429)
T d1s0aa_         164 LWKGYLPENLFAPAPQSRMDGE-WD-ERDMVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI  240 (429)
T ss_dssp             GGTTTSCCCEEECCCCSBC-CC-CC-GGGGHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTC
T ss_pred             ccCccccccccccccccccccc-cc-hhhhhhhhhhhhhc-CCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCc
Confidence            221   2223333222211111 12 11245555555543 4689999999987 7788889999999999999999999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCC-----CccccCCCcHHHHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFNTFGGNPVCTAA  363 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~-----~~~~t~~~~~~~~aa  363 (480)
                      +||+|||||||||+| .+|+++++++.|||+|+||+++|| +|+|++++++++++.+...     .|++||++||++|++
T Consensus       241 llI~DEV~tGfGRtG-~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aa  319 (429)
T d1s0aa_         241 LLIADEIATGFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA  319 (429)
T ss_dssp             EEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHH
T ss_pred             ceehhhccccccccc-cccccccceecccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchh
Confidence            999999999999999 899999999999999999999977 8999999999999887542     367999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCcee
Q 011669          364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLV  443 (480)
Q Consensus       364 a~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v  443 (480)
                      ++++|++++++++.+++++++++++++|+++. +++.+.++||.|+|+++++..+..        ...+.+.|+++||++
T Consensus       320 a~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~-~~~~v~~vrg~Gl~~~~e~~~~~~--------~~~~~~~~~~~Gl~~  390 (429)
T d1s0aa_         320 ANASLAILESGDWQQQVADIEVQLREQLAPAR-DAEMVADVRVLGAIGVVETTHPVN--------MAALQKFFVEQGVWI  390 (429)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGG-GCTTEEEEEEETTEEEEEESSCBC--------HHHHHHHHHHTTEEC
T ss_pred             hhccccccccccccchhhHHHHHHHHHHHHhc-cCCceEEEeecccEEEEEecCccc--------HHHHHHHHHHCCcEE
Confidence            99999999999999999999999999999975 478899999999999999964321        456888999999999


Q ss_pred             eccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          444 GKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       444 ~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+.   ++.+||+||+++|++|||+++++|++++++
T Consensus       391 ~~~---g~~i~~~Ppl~it~~eid~~~~~l~~al~e  423 (429)
T d1s0aa_         391 RPF---GKLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             CCB---TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             Eec---CCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence            875   489999999999999999999999999875

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=100.00  E-value=1.1e-70  Score=561.13  Aligned_cols=409  Identities=25%  Similarity=0.351  Sum_probs=345.1

Q ss_pred             CCCHHHHHHHHhhhcCCccc-------cccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 011669           57 GPSADEILAKRKTFLSPSLF-------HLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK  129 (480)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~-------~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~  129 (480)
                      ..++++++++.+++++.+..       .+...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~   82 (427)
T d2gsaa_           3 TIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAME   82 (427)
T ss_dssp             CHHHHHHHHHHHHHSGGGSSSGGGCCTTTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHhhcCCCCCCCccccccCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHH
Confidence            46788999999999864321       12346999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCC
Q 011669          130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN  209 (480)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~  209 (480)
                      ++.+  ....+....++++.+.+..+. .+.|+|++||+||||.|+|+||.+++|.+||+++++|||++.+++++++.+.
T Consensus        83 ~~~~--~~~~~~~~~~la~~~~~~~~~-~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~  159 (427)
T d2gsaa_          83 KGTS--FGAPCALENVLAEMVNDAVPS-IEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGV  159 (427)
T ss_dssp             TCSC--CSSCCHHHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHH
T ss_pred             hcCc--cccchhHHHHHHHHHHhhCCc-cccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcc
Confidence            8644  234567778899999988774 6899999999999999999999999999999999999999999999987654


Q ss_pred             ccccccC-CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC
Q 011669          210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG  288 (480)
Q Consensus       210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  288 (480)
                      ++...+. +++.....++....+++ |    ++.+++++++. ++++++||+||+|+++|.++||++||++|+++|+|||
T Consensus       160 ~~~~~p~~~~~~~~~~~~~~~~~~~-~----~~~le~~~~~~-~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~  233 (427)
T d2gsaa_         160 ATLGLPSSPGVPKKTTANTLTTPYN-D----LEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD  233 (427)
T ss_dssp             HHTTCCSCSSSCHHHHTTEEEECTT-C----HHHHHHHHTTS-TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTT
T ss_pred             cccCCCCCCCCcccCccceeccCcc-h----HHHHHHHHHhC-CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhc
Confidence            4443332 23332223333333332 3    67888888764 5689999999999999999999999999999999999


Q ss_pred             CEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHhhcC---CCccccCCCcHHHHHHHH
Q 011669          289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAGH  365 (480)
Q Consensus       289 illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa~  365 (480)
                      ++||+||||||| |+| .+|+++++|+.|||+++||+++||+|+|++++++++++.+..   ..+++||++||++|+|++
T Consensus       234 ~llI~DEv~tG~-r~g-~~~~~~~~gi~PDi~~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAal  311 (427)
T d2gsaa_         234 ALLVFDEVMTGF-RIA-YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI  311 (427)
T ss_dssp             CEEEEECTTTBT-TTB-TTCHHHHTTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred             eeeeeccccccc-eec-ccchHHhcCCCHHHHhhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHH
Confidence            999999999999 788 789999999999999999999999999999999999998865   347799999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCC-----cCCCCHHHHHHHHHHHHHcC
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKEMG  440 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~G  440 (480)
                      ++|++++++++.+++++++++++++|+++.++++....+.+.|.|+++.+..+..     ....+......+...|+++|
T Consensus       312 a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~G  391 (427)
T d2gsaa_         312 KTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG  391 (427)
T ss_dssp             HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred             HhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999998877788888888888754321     11223344567888999999


Q ss_pred             ceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          441 VLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       441 v~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      |++.|++.    .++.||+++|++|||+++++|+++++++
T Consensus       392 v~l~p~~~----~~~~~~l~~Te~dId~~l~al~~al~~L  427 (427)
T d2gsaa_         392 IYLAPSQF----EAGFTSLAHTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             EECCSSTT----SCEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             EEECCCCC----cceeCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            99987542    2344789999999999999999999875

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.3e-70  Score=565.34  Aligned_cols=413  Identities=23%  Similarity=0.326  Sum_probs=337.6

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHH
Q 011669           43 PRMPPFDYSPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVD  122 (480)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~  122 (480)
                      ++.|...+   .+|+|++.+++++..++..+...   +.|+++++|+|+||||.|||+||||.+|+++++|||+||+|++
T Consensus         3 ~~~~~~~~---~~pgp~s~~l~~~~~~~~~~~~~---~~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~   76 (461)
T d1ohwa_           3 YDGPLMKT---EVPGPRSRELMKQLNIIQNAEAV---HFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVK   76 (461)
T ss_dssp             CSSCBCCS---CSSCHHHHHHHHHHHHHSCCTTC---CCCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHH
T ss_pred             CCCCEEec---CCCChHHHHHHHHHHHhcCCCCC---CCCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHH
Confidence            45564443   57899999999999888776533   3489999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccc-----ccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhh----------------
Q 011669          123 SIVNQIKRIQHSTV-----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY----------------  181 (480)
Q Consensus       123 A~~~~~~~~~~~~~-----~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~----------------  181 (480)
                      |+.+|+++..+...     ........+|+++|.+..+.++++|+|++||+||||.|||+||.+                
T Consensus        77 ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~  156 (461)
T d1ohwa_          77 LVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEEL  156 (461)
T ss_dssp             HHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhh
Confidence            99999987654221     122344667888888888888999999999999999999999875                


Q ss_pred             ----------cCCceEEEEcCCcccccccccccccCCCccccccC-CCeeEecCCCCcCCCCCCC-------hHHHHHHH
Q 011669          182 ----------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFGAD-------GEMYAKDV  243 (480)
Q Consensus       182 ----------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~-~g~~~~~~p~~~~~~~~~d-------~~~~~~~l  243 (480)
                                +++.+||+++++|||.+.+++++++.+.++..... .+....+.+. +..++...       .....+++
T Consensus       157 ~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l  235 (461)
T d1ohwa_         157 ETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLEEV  235 (461)
T ss_dssp             HHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCccccccc-ccccccccccccchhhhhhHHHH
Confidence                      34568999999999999999999987654433222 2222222221 11111110       12234566


Q ss_pred             HHHHHc--cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC--Ccce
Q 011669          244 QDLIDF--GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV--VPDI  319 (480)
Q Consensus       244 e~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~--~pDi  319 (480)
                      ++++..  ..++++++||+||+|+++|.+++|++||++|+++|++||++||+|||||||||+| .+|+++++++  .||+
T Consensus       236 ~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG-~~~~~e~~gi~~~PDi  314 (461)
T d1ohwa_         236 EDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPADV  314 (461)
T ss_dssp             HHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTS-SSSGGGGGCCSSCCSE
T ss_pred             HHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccccccccc-ccccccccccccCchh
Confidence            666642  2356899999999999999999999999999999999999999999999999999 8999999998  5999


Q ss_pred             eeeccccccCc-cccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669          320 VTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY  398 (480)
Q Consensus       320 vt~sK~~g~G~-pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~  398 (480)
                      +|+||++++|. +.+.++.+      .....+.+||++||++|++++++|++++++++.+++++++++++++|+++..++
T Consensus       315 v~~gK~l~~g~~~~~~~~~~------~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~  388 (461)
T d1ohwa_         315 MTFSKKMMTGGFFHKEEFRP------NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARY  388 (461)
T ss_dssp             EEECGGGSSEEEEECGGGSC------SSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhccccccccccccccc------ccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999874 34333322      233457899999999999999999999999999999999999999999999998


Q ss_pred             C-ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          399 G-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       399 ~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      + .+.++||.|+|+++++.        +.....++.+.|+++||++.+.+  ++.|||.||+++|++|+|+++++|+++|
T Consensus       389 ~~~i~~vrG~Gl~~~ie~~--------~~~~~~~i~~~~~~~Gll~~~~~--~~~ir~~PpL~it~~eid~~~~~l~~~l  458 (461)
T d1ohwa_         389 PQFISRVRGRGTFCSFDTP--------DESIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDIL  458 (461)
T ss_dssp             TTTCEEEEEETTEEEEECS--------SHHHHHHHHHHHHHTTEECEEET--TTEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCceEEeeeeeEEEEEEcC--------CHHHHHHHHHHHHHCCeEEeeCC--CCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence            5 78999999999999983        34556789999999999998865  6899999999999999999999999999


Q ss_pred             hh
Q 011669          478 SK  479 (480)
Q Consensus       478 ~~  479 (480)
                      ++
T Consensus       459 ~e  460 (461)
T d1ohwa_         459 AD  460 (461)
T ss_dssp             HT
T ss_pred             hc
Confidence            86

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=2.9e-69  Score=547.13  Aligned_cols=389  Identities=27%  Similarity=0.460  Sum_probs=318.2

Q ss_pred             HHHHHHHHhhhcCCccccccCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC
Q 011669           60 ADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL  139 (480)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~  139 (480)
                      .+++++..++|..+.   |.+.|++|++|+|.||||.|||+||||.+|+++++|||+||+|++|+++|++++.+.+..+.
T Consensus         3 ~~~~~~~~~~~~~~~---y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~   79 (404)
T d1z7da1           3 PEDYINNELKYGAHN---YDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFF   79 (404)
T ss_dssp             HHHHHHHHHHHBCCC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSE
T ss_pred             HHHHHHHHHhcCCCC---CCCCCceEEEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccccc
Confidence            467888888898775   44669999999999999999999999999999999999999999999999999876655444


Q ss_pred             ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcC--------CceEEEEcCCcccccccccccccCCCcc
Q 011669          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG--------CNDIISLRNAYHGNAAGTMGATAQSNWK  211 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~--------~~~ii~~~~~yhG~~~~~~~~~~~~~~~  211 (480)
                      +.....+++.+.+. + +.+.++|++||+||++.|+|++|.++.        +..++.+.++|||.+......++...++
T Consensus        80 ~~~~~~~~~~~~~~-~-~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~  157 (404)
T d1z7da1          80 SVPLGICERYLTNL-L-GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCT  157 (404)
T ss_dssp             EHHHHHHHHHHHHH-H-TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC------------------
T ss_pred             hHHHHHHHHhhhhc-c-ccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccc
Confidence            44444444444444 4 357899999999999999999998753        3479999999999999999888765544


Q ss_pred             ccccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCC
Q 011669          212 FNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG  289 (480)
Q Consensus       212 ~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  289 (480)
                      ....+  ..+...+.+         +    .+.++..+.   .+++||||+||+++++|.++++++||++|+++|++||+
T Consensus       158 ~~~~~~~~~~~~~~~~---------~----~~~l~~~~~---~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~  221 (404)
T d1z7da1         158 SNFGPFAPQFSKVPYD---------D----LEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNV  221 (404)
T ss_dssp             --------CEEEECTT---------C----HHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred             cCCCCCCccccccccc---------h----HHHHHHHhc---CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCC
Confidence            33211  233333321         2    345555554   46899999999999999999999999999999999999


Q ss_pred             EEEEcccccCccccCCCcccccccCCCcceeeeccccccC-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHH
Q 011669          290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL  368 (480)
Q Consensus       290 llI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L  368 (480)
                      ++|+|||||||||+| .+|+++++|+.|||+|+||+++|| +|+|++++++++++.+....+++||++||++|+|++++|
T Consensus       222 llI~DEV~tGfgRtG-~~~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L  300 (404)
T d1z7da1         222 LFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEAL  300 (404)
T ss_dssp             EEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHH
T ss_pred             EEEEEcCccCCCccc-ccccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhh
Confidence            999999999999999 899999999999999999999988 899999999999999998889999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc
Q 011669          369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF  448 (480)
Q Consensus       369 ~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  448 (480)
                      +.+.++++.+++.+.++++.+++.++.++++.+.+++|.|+|+++++..+..       ....+.+.|+++||++.+.+ 
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~-------~~~~~~~~l~~~Gl~~~~~~-  372 (404)
T d1z7da1         301 NVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELV-------NVLDICLKLKENGLITRDVH-  372 (404)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTC-------CHHHHHHHHHHTTEECCEET-
T ss_pred             hhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcc-------cHHHHHHHHHhCCeEEecCC-
Confidence            9999999999999999999999999999999999999999999999976432       13567888999999998755 


Q ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          449 YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       449 ~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       ++.|||.||+++|+++||+++++|++++++
T Consensus       373 -~~~ir~~Ppl~it~~~id~~~~~l~~alk~  402 (404)
T d1z7da1         373 -DKTIRLTPPLCITKEQLDECTEIIVKTVKF  402 (404)
T ss_dssp             -TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCEEEEECCcCCCHHHHHHHHHHHHHHHHh
Confidence             688999999999999999999999999975

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-35  Score=296.53  Aligned_cols=352  Identities=15%  Similarity=0.176  Sum_probs=250.9

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCCC-CHHHHHHHHHHHHhcccccc-----ccCChHHHHHHHHHHH
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALAS  152 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~-----~~~~~~~~~l~e~L~~  152 (480)
                      |+...++.+++|.++||.||++||||+++.+   ||+. ||+|++|+.+++++.+....     ....+...+|.++|++
T Consensus        25 ~r~~~~i~~~~g~~v~~~dG~~~l~f~s~dY---LGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~  101 (401)
T d1fc4a_          25 FKEERIITSAQQADITVADGSHVINFCANNY---LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAA  101 (401)
T ss_dssp             CCCCCCBCSCSSSEEEBTTSCEEEECCCSCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHH
T ss_pred             CCcceeccCCCCCeEEecCCCEEEEEEcccc---ccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHH
Confidence            4445678999999999999999999987643   6765 99999999999998653322     1246778899999999


Q ss_pred             hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                      +++  .+.++++|||++||..+++...   ++.++|+.+-..|......+........+          ++        .
T Consensus       102 ~~g--~e~al~~~SG~~An~~~i~~l~---~~~d~i~~d~~~h~s~~~G~~~~~a~~~~----------~~--------~  158 (401)
T d1fc4a_         102 FLG--MEDAILYSSCFDANGGLFETLL---GAEDAIISDALNHASIIDGVRLCKAKRYR----------YA--------N  158 (401)
T ss_dssp             HHT--CSEEEEESCHHHHHHTTHHHHC---CTTCEEEEETTCCHHHHHHHHTSCSEEEE----------EC--------T
T ss_pred             hhc--CCceEEecchhhhhHHHHHHhc---CCCcEEEeCCcchHHHHccccccCceEEE----------Ec--------C
Confidence            984  5789999999999999998543   44445555555555444433333222111          11        0


Q ss_pred             CCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcc-c
Q 011669          233 GADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW-G  309 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~-~  309 (480)
                       +|    .++++++++..  .....++|++|++.++.|.+.+    |+++++||++||+++|+||+|+++ ..|.... .
T Consensus       159 -~d----~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~g-~~g~~G~G~  228 (401)
T d1fc4a_         159 -ND----MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVG-FVGENGRGS  228 (401)
T ss_dssp             -TC----HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTT-TSSTTSCCH
T ss_pred             -CC----hHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhccc-cccCCCCcc
Confidence             23    34454444321  2346689999999999998877    999999999999999999999853 4332211 2


Q ss_pred             ccccCC--Cccee--eeccccccCccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHH
Q 011669          310 FEAHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHV  382 (480)
Q Consensus       310 ~~~~~~--~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~  382 (480)
                      .+++++  .+|++  |+||+++ |.+.|++.+++++++.+....  +..+-+.+|...+++.++++.+.+ +++.+++++
T Consensus       229 ~~~~~~~~~~dii~~tl~Ka~g-g~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~  307 (401)
T d1fc4a_         229 HEYCDVMGRVDIITGTLGKALG-GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWA  307 (401)
T ss_dssp             HHHTTCTTCCSEEEEESSSTTC-SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chhccCCCCCeEEEeecccccc-cCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHH
Confidence            344555  35555  7899995 556788999999998876432  334555678888888888887765 467788999


Q ss_pred             HHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-----CCCEEEEeC
Q 011669          383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-----YGNVFRITP  457 (480)
Q Consensus       383 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p  457 (480)
                      +.+++++.+....  +..   ....+.++.+.+.        +...+..+.+.|+++||++.+..+     ....+||++
T Consensus       308 ~~~~~~~~l~~~g--~~~---~~~~~pIv~v~~~--------~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~  374 (401)
T d1fc4a_         308 NARQFREQMSAAG--FTL---AGADHAIIPVMLG--------DAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQM  374 (401)
T ss_dssp             HHHHHHHHHHHTT--CCB---CCSSSSEEEEEEE--------CHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEEC
T ss_pred             HHHHHHhhhcccC--Ccc---CCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEE
Confidence            9999988887752  111   1122334444442        234466789999999999865321     235699999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhC
Q 011669          458 PLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      +..+|++|||+++++|+++.+++
T Consensus       375 ~a~hT~edId~~v~al~ev~~~l  397 (401)
T d1fc4a_         375 SAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998874

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-31  Score=264.53  Aligned_cols=345  Identities=17%  Similarity=0.189  Sum_probs=250.2

Q ss_pred             cCCCeEEEeeeccEEEeCCCCEEEeccCCcccccCCC-CCHHHHHHHHHHHHhccccc---c--ccCChHHHHHHHHHHH
Q 011669           79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST---V--LYLNHAIADFAEALAS  152 (480)
Q Consensus        79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~---~--~~~~~~~~~l~e~L~~  152 (480)
                      ++.+..+.+++|.|+. .||++||||++..+   ||. .||+|++++.+++++++..+   .  .+..+...+|+++|++
T Consensus        19 ~~~~~~~~~~~g~~i~-~~g~~~l~f~s~dY---LGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~   94 (383)
T d1bs0a_          19 LRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAE   94 (383)
T ss_dssp             CCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred             CccccccCCCCCCeEE-ECCeEEEEEEcccc---cccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHH
Confidence            4455677899999995 99999999987644   454 38999999999999864321   1  2456888999999999


Q ss_pred             hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCC
Q 011669          153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF  232 (480)
Q Consensus       153 ~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  232 (480)
                      +++  .+.+++++||+.||..++...   .++.++++.+...|.............            ...++.      
T Consensus        95 ~~g--~e~al~~~SG~~an~~~i~al---~~~~d~v~~d~~~h~si~~g~~~~~~~------------~~~~~h------  151 (383)
T d1bs0a_          95 WLG--YSRALLFISGFAANQAVIAAM---MAKEDRIAADRLSHASLLEAASLSPSQ------------LRRFAH------  151 (383)
T ss_dssp             HHT--CSEEEEESCHHHHHHHHHHHH---CCTTCEEEEETTCCHHHHHHHHTSSSE------------EEEECT------
T ss_pred             hcC--CCceEEecccchhhHHHHHhh---cCCCceEEeeccccHHHhhccccCCCc------------ceEecc------
Confidence            994  578899999999999999753   356677777888887776665544322            111111      


Q ss_pred             CCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-cc
Q 011669          233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FE  311 (480)
Q Consensus       233 ~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~  311 (480)
                       +|    .+++++.+... ..+...|++|.++++.|.+.|    +++|.++|++||+++|+||+|+ +|-.|....+ .+
T Consensus       152 -nd----~~~le~~l~~~-~~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~-~gv~G~~g~G~~~  220 (383)
T d1bs0a_         152 -ND----VTHLARLLASP-CPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG-TGVIGEQGRGSCW  220 (383)
T ss_dssp             -TC----HHHHHHHHHSC-CSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSSGGGCCHHH
T ss_pred             -hH----HHHHHHHhccc-CCCceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeeccee-eeecCCcccchHH
Confidence             34    67888888764 346678999999999999988    9999999999999999999997 4433322222 46


Q ss_pred             ccCCCccee--eeccccccCccccccccCHHHHHhhcCCC--ccccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHH
Q 011669          312 AHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVG  384 (480)
Q Consensus       312 ~~~~~pDiv--t~sK~~g~G~pig~v~~~~~~~~~l~~~~--~~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~  384 (480)
                      ++++.+|++  ++||++|  ...|+++++.++++.+....  +..+...+|..++++++++++++..   ...++..++.
T Consensus       221 ~~~~~~~~~~~t~~ka~g--~~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~  298 (383)
T d1bs0a_         221 LQKVKPELLVVTFGKGFG--VSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALI  298 (383)
T ss_dssp             HTTCCCSEEEEESSSTTS--SCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             HcCCcccccccccccccc--ccccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            778878776  4667665  34578999999988886532  3455567788888888998887653   3455566666


Q ss_pred             HHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-----cCCCEEEEeCCC
Q 011669          385 SYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-----FYGNVFRITPPL  459 (480)
Q Consensus       385 ~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~p~~  459 (480)
                      .++++.|.++    +.. ...+...++.+.+        .+...+..+.+.|+++||++.+..     .....+||+++.
T Consensus       299 ~~~~~~l~~~----g~~-~~~~~s~Ii~v~~--------g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a  365 (383)
T d1bs0a_         299 TRFRAGVQDL----PFT-LADSCSAIQPLIV--------GDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTA  365 (383)
T ss_dssp             HHHHHHHTTS----SCE-ECSCCSSBCCEEE--------ESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCT
T ss_pred             HHHHHHHHhc----CCc-cCCCCCCEEEEEE--------CCHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCC
Confidence            7777666554    221 1222333333433        223456788999999999986532     113469999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 011669          460 CFTKEDADYLVDVMDYS  476 (480)
Q Consensus       460 ~~t~~~id~~l~~l~~~  476 (480)
                      .+|++|||+++++|+.+
T Consensus       366 ~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         366 AHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             TCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999999864

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=5.6e-30  Score=256.44  Aligned_cols=346  Identities=13%  Similarity=0.077  Sum_probs=223.8

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc--ccccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEAN  171 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~--~~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~  171 (480)
                      .+|+++|||..|.+..   -.+|+|.+|+.+.+++..+.  ...+..+...++++.+.+..+  .+.++|++|+|+++|+
T Consensus        28 ~~G~~vi~l~~g~p~~---~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al  104 (382)
T d1b5pa_          28 RQGVDLVALTAGEPDF---DTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL  104 (382)
T ss_dssp             HTTCCCEECCCSSCSS---CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred             hCCCCeEECCCCCCCC---CCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHH
Confidence            4577889998887653   35789999999988764221  112222344455555544443  3567899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ..+++....  +++.|++.+|+|+++.......             |...+.+|......|..|    .+++++.++   
T Consensus       105 ~~~~~~l~~--~gd~vl~~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~~~---  162 (382)
T d1b5pa_         105 FNLFQAILD--PGDEVIVLSPYWVSYPEMVRFA-------------GGVVVEVETLPEEGFVPD----PERVRRAIT---  162 (382)
T ss_dssp             HHHHHHHCC--TTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHTTCC---
T ss_pred             HHHHHHhCC--CCCEEEECCCCcHHHHHHHHHh-------------cCeEEEEecccccccCCC----HHHHHHhCC---
Confidence            999986643  5688999999998876544333             222233322222233334    456655553   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc-ccCCCcceeeeccccc-cC
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE-AHGVVPDIVTMAKGIG-NG  329 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~-~~~~~pDivt~sK~~g-~G  329 (480)
                       ++++++++...+|++|.+ .+.+.+++|.++|++||+++|+||+|.++.+.+....... ..+...-+.++||.++ .|
T Consensus       163 -~~~~~i~~~~P~NPTG~~-~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G  240 (382)
T d1b5pa_         163 -PRTKALVVNSPNNPTGAV-YPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG  240 (382)
T ss_dssp             -TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG
T ss_pred             -CCCeEEEECCCCCCcchh-CCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcH
Confidence             355555554447778876 5889999999999999999999999999877663221111 1122223447999999 89


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccc
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI-QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG  408 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i-~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g  408 (480)
                      +|+||+++++++++.+.......+.+.+.+.+.++.+.+... ..+.+.+..++..+..++.+.+.....+........|
T Consensus       241 lR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg  320 (382)
T d1b5pa_         241 WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGA  320 (382)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBT
T ss_pred             hheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCCce
Confidence            999999999999887765444455566666666655555321 1223333333333333333433333334333233446


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCC--CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYG--NVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~--~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      +++|+++....       .....+.+.|+++||++.||..|+  +++||+  ++.+++++++++++|.++|
T Consensus       321 ~~~~~~~~~~~-------~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis--~~~~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         321 FYVLMDTSPIA-------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLS--YATSEENLRKALERFARVL  382 (382)
T ss_dssp             TEEEEECTTTC-------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEE--CCSCHHHHHHHHHHGGGGC
T ss_pred             EEEeEeCCCCC-------CCHHHHHHHHHHCCEEEEeCcccCCCCeEEEE--EcCCHHHHHHHHHHHHHhC
Confidence            77888874321       124567788899999999986543  689999  4578999999999998753

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.97  E-value=2e-29  Score=252.86  Aligned_cols=346  Identities=10%  Similarity=0.060  Sum_probs=223.5

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcccc--ccccCChHHHHHHHHHHHhC--CCCCCEEEEeCCHHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TVLYLNHAIADFAEALASKM--PGNLKVVFFTNSGTEAN  171 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~--~~~~~~~~~~~l~e~L~~~~--~~~~~~v~f~~sGseA~  171 (480)
                      .+|+.+|||..|.+..   -.+|.|.+|+.+.+++..+.  ...+..+....+++.+.+..  +...++|++|+|+++|+
T Consensus        27 ~~g~~vi~l~~G~p~~---~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al  103 (388)
T d1j32a_          27 AEGIDVCSFSAGEPDF---NTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI  103 (388)
T ss_dssp             TTTCCCEECCCSSCSS---CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             HCCCCeEECCCCCCCC---CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHH
Confidence            3567789998887643   35789999999988764221  11122233444444444443  34567899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ..+++....  +++.|++.+|+|.++.......             +...+.++......|..|    .+++++.++   
T Consensus       104 ~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~d----~~~l~~~~~---  161 (388)
T d1j32a_         104 FNLMLAMIE--PGDEVIIPAPFWVSYPEMVKLA-------------EGTPVILPTTVETQFKVS----PEQIRQAIT---  161 (388)
T ss_dssp             HHHHHHHCC--TTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCGGGTTCCC----HHHHHHHCC---
T ss_pred             HHHHHHHhC--CCCEEEEcCCCcHHHHHHHHHh-------------cCeEEEEecccccccCCC----HHHHHHhCC---
Confidence            999986543  6789999999998765443322             222233333333334444    567777664   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc-----CCCcceeeecccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-----GVVPDIVTMAKGI  326 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~-----~~~pDivt~sK~~  326 (480)
                      + +++++++...+|++|.+ .+++.+++|.++|++||+++|+||+|..+...+.....+...     +...-+.+|||.+
T Consensus       162 ~-~~~~~~~~~P~NPTG~~-~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~  239 (388)
T d1j32a_         162 P-KTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY  239 (388)
T ss_dssp             T-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT
T ss_pred             C-CCeEEEECCCCCCCCcc-cchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh
Confidence            2 45444444446778876 588999999999999999999999998876665322221111     1122344799999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                      + .|+|+||+++++++++.+.........+.+..++.++...++.  .+++.++.++.-+..++.+.+...+++.+....
T Consensus       240 ~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  317 (388)
T d1j32a_         240 AMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN--SQDCVQEMLAAFAERRRYMLDALNAMPGLECPK  317 (388)
T ss_dssp             TCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS--CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCC
T ss_pred             hcchhHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccc--hHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecC
Confidence            9 8999999999999988776544445666778888877776653  223333333222222233333333443333333


Q ss_pred             c-cceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          406 G-RGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       406 g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      + .|+++|+++.....       ...++++.| .++||.+.||..|  .+++||+  +..+++++++++++|+++++.
T Consensus       318 p~gg~~l~~~l~~~~~-------~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls--~~~~~e~l~~al~rl~~~l~~  386 (388)
T d1j32a_         318 PDGAFYMFPSIAKTGR-------SSLDFCSELLDQHQVATVPGAAFGADDCIRLS--YATDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             CCBTTEECCBCGGGTC-------CHHHHHHHHHHHHCEECEEGGGGTCTTBEEEE--CCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCC-------CHHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EeCCHHHHHHHHHHHHHHHHH
Confidence            3 46677777643211       134455555 4679999998654  3789999  457899999999999999875

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=2.6e-29  Score=251.96  Aligned_cols=342  Identities=14%  Similarity=0.114  Sum_probs=222.0

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC-------CCCCCEEEEeCCHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM-------PGNLKVVFFTNSGTEA  170 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~-------~~~~~~v~f~~sGseA  170 (480)
                      +.+|||..|.+..  + .++.|.+++.+.+++..   ..|. .....+|++.+++++       ....++|++|+|++++
T Consensus        25 ~dvi~l~~g~p~~--~-~p~~v~~~~~~a~~~~~---~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~   98 (388)
T d1gdea_          25 KDVISLGIGEPDF--D-TPQHIKEYAKEALDKGL---THYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQA   98 (388)
T ss_dssp             TTCEECCCCSCCS--C-CCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHH
T ss_pred             CCeEECCCCCCCC--C-CCHHHHHHHHHHHhcCc---cCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchH
Confidence            4579998887643  2 57899999999887632   1232 233455555555543       1234579999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +..++.....  +++.|++.+++|.++...+....             ...+.+|......|+-|    .++|++.++  
T Consensus        99 l~~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~~~--  157 (388)
T d1gdea_          99 FLMGLSAFLK--DGEEVLIPTPAFVSYAPAVILAG-------------GKPVEVPTYEEDEFRLN----VDELKKYVT--  157 (388)
T ss_dssp             HHHHHTTTCC--TTCEEEEEESCCTTHHHHHHHHT-------------CEEEEEECCGGGTTCCC----HHHHHHHCC--
T ss_pred             HHHHHHHhcC--CCCEEEECCCCcHHHHHHHHHcC-------------CEEEEeecccccCCCCC----HHHHHHhCc--
Confidence            9998875433  67899999999988766554432             22233332222334444    567777764  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCc----ceeeecccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP----DIVTMAKGI  326 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~p----Divt~sK~~  326 (480)
                        ++++++++...+|++|.+ .+++.+++|.++|++||+++|+||+|..|...+............+    -+.+|||.+
T Consensus       158 --~~~~~i~~~~P~NPtG~~-~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  234 (388)
T d1gdea_         158 --DKTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF  234 (388)
T ss_dssp             --TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT
T ss_pred             --cCCeEEEECCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhc
Confidence              255555555557778876 4889999999999999999999999998865553222222222222    234799999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                      + .|+|+||+++++++.+.+.......+.+.+.+.+.++.++|+........+..++..+..+..+.+.....+......
T Consensus       235 ~~~GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p  314 (388)
T d1gdea_         235 AMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKP  314 (388)
T ss_dssp             TCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             cCccccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCC
Confidence            9 899999999999988877665555666777777777776664211112222222222222233333333333333334


Q ss_pred             ccceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..|+++|+++.....       ...++++.| ++.||++.||..|    .+++||+  ++.+++++++++++|.+++++
T Consensus       315 ~gg~fl~~~l~~~~~-------~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis--~~~~~e~l~~al~rL~~~l~e  384 (388)
T d1gdea_         315 KGAFYIFPRIRDTGL-------TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRIS--YATAYEKLEEAMDRMERVLKE  384 (388)
T ss_dssp             CBTTEECCBCGGGTC-------CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCC-------CHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence            446778887743211       134566655 5679999998544    4789999  567899999999999999986

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.95  E-value=1.8e-26  Score=229.44  Aligned_cols=347  Identities=20%  Similarity=0.207  Sum_probs=243.5

Q ss_pred             CCeEEEeeeccEE------EeCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc--c---ccCChHHHHHHHH
Q 011669           81 KPLNVVDGKMQYL------FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST--V---LYLNHAIADFAEA  149 (480)
Q Consensus        81 ~p~~~~~g~G~~l------~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~--~---~~~~~~~~~l~e~  149 (480)
                      ....+.+..|.+.      .+.++++++||+++.+.. |. .||+|++++.+.+++.+..+  .   .+..+...+|.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndYLG-L~-~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~   98 (396)
T d2bwna1          21 TFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLG-MG-QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAE   98 (396)
T ss_dssp             CCCEEEECTTSTTEEEEECTTSCEEEEEECSCSCTTS-GG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHH
T ss_pred             cccccccccCCCCcceEeecCCCCeEEEEEEcccccC-cC-CCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHH
Confidence            3345667666531      234568999998876532 22 58999999999999864321  1   2346788899999


Q ss_pred             HHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcC
Q 011669          150 LASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR  229 (480)
Q Consensus       150 L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~  229 (480)
                      |+++++  .+..++++||..||..++..... .+++.+|..+-..|......+.+++.+..++.+               
T Consensus        99 lA~~~g--~e~all~~sG~~An~~~i~~l~~-~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H---------------  160 (396)
T d2bwna1          99 IAGLHQ--KEAALVFSSAYNANDATLSTLRV-LFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH---------------  160 (396)
T ss_dssp             HHHHTT--CSEEEEESCHHHHHHHHHHHHHH-HSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT---------------
T ss_pred             HHHHhC--CCceeeeecchHHHHHHHHHHhc-ccCCCceeehhhhhhccchhhhccccCceEeec---------------
Confidence            999995  47789999999999999985432 256678888888888776666665433222221               


Q ss_pred             CCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc
Q 011669          230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG  309 (480)
Q Consensus       230 ~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~  309 (480)
                          +|    .++++++++...+.....|++|.+.++.|.+.|    |++|.+||++||+++++||+|+ ||-.|....+
T Consensus       161 ----nd----~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs-~Gv~G~~G~G  227 (396)
T d2bwna1         161 ----ND----VAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHA-VGMYGPRGAG  227 (396)
T ss_dssp             ----TC----HHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSSTTSCC
T ss_pred             ----ch----HHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeecccee-eeeecccccc
Confidence                34    466777776555567789999999999999988    9999999999999999999995 7655532222


Q ss_pred             -ccccCC--Cccee--eecccccc-CccccccccCHHHHHhhcCCCccccC--CCcHHHHHHHHHHHHHhhhhH---HHH
Q 011669          310 -FEAHGV--VPDIV--TMAKGIGN-GIPLGAVVTTPEIAEVLTRRNYFNTF--GGNPVCTAAGHAVLKVIQKDK---LQN  378 (480)
Q Consensus       310 -~~~~~~--~pDiv--t~sK~~g~-G~pig~v~~~~~~~~~l~~~~~~~t~--~~~~~~~aaa~a~L~~i~~~~---~~~  378 (480)
                       .+++++  ..|++  ||||++|. |   |+|++++++++.+........|  ..+|...++++++++++..+.   ...
T Consensus       228 ~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~  304 (396)
T d2bwna1         228 VAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRD  304 (396)
T ss_dssp             HHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             chhhcCCceeeeeeeecccccccccc---cccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHH
Confidence             233444  23554  89999984 4   6789999999988754433333  455777888888998876543   345


Q ss_pred             HHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCc-----CCCE
Q 011669          379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGF-----YGNV  452 (480)
Q Consensus       379 ~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-----~~~~  452 (480)
                      ++..+.+++++.+.++  .++..   .....++.+.+        .+...+..+.+.|+ ++||++.+..+     ....
T Consensus       305 ~l~~~~~~~~~~l~~~--g~~~~---~~~spIvpv~i--------g~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~r  371 (396)
T d2bwna1         305 AQQMHAKVLKMRLKAL--GMPII---DHGSHIVPVVI--------GDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTER  371 (396)
T ss_dssp             HHHHHHHHHHHHHHHH--TCCBC---CCSSSCEEEEC--------CCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCE
T ss_pred             HHHHHHHHHHHHHHhc--CCCcC---CCCCCEEEEEe--------CCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCee
Confidence            5666777888877765  22221   11223334433        22344666777755 68999865321     2357


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          453 FRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       453 iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      +||+++..+|++|||+++++|+++
T Consensus       372 lRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         372 LRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEeCccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999975

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.95  E-value=1.2e-27  Score=240.84  Aligned_cols=352  Identities=12%  Similarity=0.070  Sum_probs=222.4

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-----ccccccCChHHHHHHHHHHHhC--CCCCCEEEEeCCHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-----HSTVLYLNHAIADFAEALASKM--PGNLKVVFFTNSGTEA  170 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-----~~~~~~~~~~~~~l~e~L~~~~--~~~~~~v~f~~sGseA  170 (480)
                      +..+|||..|.+...+ ...+.+.+++.+.+....     ++...+..+....+++.+.+.+  +.+.++|++|+|++++
T Consensus        28 ~~~~i~l~~G~P~~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~a  106 (403)
T d1wsta1          28 TSDVISLAGGLPAPET-FPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQA  106 (403)
T ss_dssp             SSSCEECCCCCCCGGG-SCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHH
T ss_pred             CCCcEECCCCCCCccc-cCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHH
Confidence            3447888777654322 234567777777665432     2222223334445555555443  3457899999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +..+++....  +++.|++.+++|..+.........             ....+|.....   .+........++.....
T Consensus       107 l~~~~~~l~~--~gd~v~~~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~---~~~~~~~~~~~~~~~~~  168 (403)
T d1wsta1         107 LDLIGRVFLN--PGDPIVVEAPTYLAAIQAFKYYDP-------------EFISIPLDDKG---MRVDLLEEKLEELRKQG  168 (403)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTCC-------------EEEEEEEETTE---ECHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhh--cCCccccCCCcchhhhHHHhhccc-------------cceeEeecccC---Cccccccccchhhhhcc
Confidence            9999987543  678999999999887665544322             22221111000   12222223333333332


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc---cccCCCcceeeeccccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF---EAHGVVPDIVTMAKGIG  327 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~---~~~~~~pDivt~sK~~g  327 (480)
                       ...+.++++.+.+|++|.+ .+.+.+++|.++|++||+++|+||+|..|.+.+...-.+   +..+....+.++||.++
T Consensus       169 -~~~~~~~~~~~p~NPtG~~-~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  246 (403)
T d1wsta1         169 -KRVKIVYTVSTFQNPAGVT-MSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA  246 (403)
T ss_dssp             -CCCCEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC
T ss_pred             -ccccccccccccCCCCCcc-CCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceec
Confidence             3355566666677778876 488899999999999999999999999887666322222   22333444558999998


Q ss_pred             cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHh-cC-ce-eeE
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK-YG-II-GDV  404 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~-~~-~~-~~v  404 (480)
                      .|+|+||+++++++++.+.......+.+.+...+.+..+.+.....+.+.+++++.....++.+.+...+ .+ .+ ...
T Consensus       247 ~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  326 (403)
T d1wsta1         247 PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTK  326 (403)
T ss_dssp             GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC
T ss_pred             CcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeC
Confidence            8999999999999988776554445566677777666665553333444444444433333333332222 22 22 233


Q ss_pred             eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       405 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ...|+++|+++....        ....+.+.|+++||++.||..|      .+++||+++ ..+++++++++++|.++++
T Consensus       327 p~gg~~~~~~~~~~~--------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~-~~~~~~l~~al~rl~~~l~  397 (403)
T d1wsta1         327 PEGGMFVRVTLPEGI--------DTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFT-YVPEETIREGVRRLAETIK  397 (403)
T ss_dssp             CSBSSEEEEECCTTC--------CTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred             CCceeEEEEECCCCC--------CHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEec-CCCHHHHHHHHHHHHHHHH
Confidence            445778888874321        1345788899999999987533      368999954 3589999999999998886


Q ss_pred             h
Q 011669          479 K  479 (480)
Q Consensus       479 ~  479 (480)
                      +
T Consensus       398 ~  398 (403)
T d1wsta1         398 E  398 (403)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.95  E-value=3.7e-27  Score=236.74  Aligned_cols=347  Identities=11%  Similarity=0.033  Sum_probs=216.8

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC--CCCCCEEEEeCCHHHHHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM--PGNLKVVFFTNSGTEANELA  174 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~--~~~~~~v~f~~sGseA~~~A  174 (480)
                      .|+.+|||..|.+..   -.+|.|++|+.+.++...+....+..+....+++.+.+++  +.+.++|++|+|+++|+..+
T Consensus        29 ~g~~vi~l~~g~pdf---~~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~  105 (394)
T d1c7na_          29 VGNEVVPLSVADMEF---KNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNA  105 (394)
T ss_dssp             CCTTCCCCCSSSCSS---CCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHH
T ss_pred             cCCCeEEccCCCCCC---CCCHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhh
Confidence            467789988777653   3679999999999887533222222233344444444443  34567899999999999999


Q ss_pred             HHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCC-cCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       175 lk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      ++....  +++.|++..+.|.+.........+             ..+.++.. ....|..|    .+.++..+.   .+
T Consensus       106 ~~~~~~--pgd~vi~~~p~~~~~~~~~~~~g~-------------~~v~~~~~~~~~~~~~d----~~~~~~~~~---~~  163 (394)
T d1c7na_         106 VREFTK--PGDGVIIITPVYYPFFMAIKNQER-------------KIIECELLEKDGYYTID----FQKLEKLSK---DK  163 (394)
T ss_dssp             HHHHCC--TTCEEEECSSCCTHHHHHHHTTTC-------------EEEECCCEEETTEEECC----HHHHHHHHT---CT
T ss_pred             hccccc--cccccccccCcccchhhHHhhhhh-------------cccccccccccccccch----hhhhhhhhc---cc
Confidence            987544  778999999999776655444332             22222211 11112123    345555553   23


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc-----cCCCcceeeeccccc-
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA-----HGVVPDIVTMAKGIG-  327 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~-----~~~~pDivt~sK~~g-  327 (480)
                      +++++++...+|++|.+ .+++.+++|.++|++||+++|+||+|..|-..+........     ......+.++||.++ 
T Consensus       164 ~~~~i~l~~P~NPTG~v-~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~  242 (394)
T d1c7na_         164 NNKALLFCSPHNPVGRV-WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNI  242 (394)
T ss_dssp             TEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTC
T ss_pred             cceEEEeccccccccee-ccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccc
Confidence            67777777777888876 48899999999999999999999999988665521111111     112223447899999 


Q ss_pred             cCccccccccCH-HHHHhhcCCCccccCCCc-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhc-CceeeE
Q 011669          328 NGIPLGAVVTTP-EIAEVLTRRNYFNTFGGN-PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDV  404 (480)
Q Consensus       328 ~G~pig~v~~~~-~~~~~l~~~~~~~t~~~~-~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~v  404 (480)
                      +|+|+||+++++ .+.+.+.......+.+.. ....+++....+  ..+++.+...+..+..++.+.++.+.+ +.+...
T Consensus       243 ~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  320 (394)
T d1c7na_         243 AGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYK--ECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP  320 (394)
T ss_dssp             GGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred             cccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhc--chhhhhcccccccchhhhhhhhhhhccccceeec
Confidence            799999988775 565655543322222222 333333333222  123444444444444455555544433 333333


Q ss_pred             ecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          405 RGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       405 ~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      .+. |+++|+++.....       ...++++.|+++ ||++.||..|    .+++||+  +..++++|++++++|+++++
T Consensus       321 ~p~g~~~~~~~~~~~~~-------~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~i~eal~rl~~~l~  391 (394)
T d1c7na_         321 LIEGTYLQWIDFRALKM-------DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN--LAAPSSVIQESLERLNKALK  391 (394)
T ss_dssp             CCSBSSEEEEECGGGCC-------CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHH
T ss_pred             CCCceeEEEEECCCCCC-------CHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEE--EeCCHHHHHHHHHHHHHHHH
Confidence            444 5567887743211       145677777655 9999998554    3689999  56789999999999999998


Q ss_pred             hC
Q 011669          479 KM  480 (480)
Q Consensus       479 ~~  480 (480)
                      ++
T Consensus       392 ~L  393 (394)
T d1c7na_         392 DL  393 (394)
T ss_dssp             HH
T ss_pred             hc
Confidence            63

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=2.1e-27  Score=236.24  Aligned_cols=333  Identities=15%  Similarity=0.133  Sum_probs=224.4

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar  179 (480)
                      .||+..|.+..   -.+|.+++|+++.+++.    ..|+. ....+|++.+++++..+.++|++|+|++||+..+++...
T Consensus        27 ~I~ls~g~p~~---~~p~~i~~al~~~l~~~----~~Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~   99 (368)
T d1v2da_          27 AVNLGQGFPSN---PPPPFLLEAVRRALGRQ----DQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV   99 (368)
T ss_dssp             CEECCCCSCSS---CCCHHHHHHHHHHTTTS----CSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred             CEEecCCCCCC---CCCHHHHHHHHHHhhcc----cCCCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc
Confidence            48887776643   25789999999877653    23443 347889999999998888899999999999999998654


Q ss_pred             hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEE
Q 011669          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (480)
Q Consensus       180 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi  259 (480)
                      .  +++.|++.+++|+...........           .+...+.+. ....|..|    .+++++.++    +.+++++
T Consensus       100 ~--~~d~v~~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~-~~~~~~~d----~~~l~~~~~----~~~~~i~  157 (368)
T d1v2da_         100 G--PGDEVVVLEPFFDVYLPDAFLAGA-----------KARLVRLDL-TPEGFRLD----LSALEKALT----PRTRALL  157 (368)
T ss_dssp             C--TTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEECEE-ETTEEECC----HHHHHTTCC----TTEEEEE
T ss_pred             c--ccccccccCCcchhhhhHHHhcCC-----------ccceecccc-ccccccCC----HHHHHHhhc----cCceEEE
Confidence            3  668899999999876655443321           111111111 01112223    456666654    2445555


Q ss_pred             EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcc-cccccCCCcceeeeccccc-cCcccccccc
Q 011669          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW-GFEAHGVVPDIVTMAKGIG-NGIPLGAVVT  337 (480)
Q Consensus       260 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~-~~~~~~~~pDivt~sK~~g-~G~pig~v~~  337 (480)
                      +...+|++|.+ .+.+.+++|.++|++||+++|.||+|..+........ .....+....+.++||.++ .|+|+||++.
T Consensus       158 ~~~p~NPtG~~-~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~  236 (368)
T d1v2da_         158 LNTPMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVG  236 (368)
T ss_dssp             EESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEEC
T ss_pred             EcCCCCccccc-CCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccc
Confidence            54456778876 4888899999999999999999999976543331111 1111222333557888888 6899999999


Q ss_pred             CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEec
Q 011669          338 TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT  417 (480)
Q Consensus       338 ~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~  417 (480)
                      ++++++.+.......+++.+++.+.++.++++.....++.+++++..+..++.+.+..+++++.......|+++|+++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~  316 (368)
T d1v2da_         237 PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG  316 (368)
T ss_dssp             CTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTT
T ss_pred             cccccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCCc
Confidence            99998877766566777888888888888877655545555554444444444544444555433333346778887632


Q ss_pred             CCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          418 DRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      .            ...+.|.++||++.||..|      .+++||+  ++.+++++++++++|++++
T Consensus       317 ~------------~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis--~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         317 W------------DAFRLVEEARVALIPASAFYLEDPPKDLFRFA--FCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             C------------CHHHHHHHTCEECEEGGGGCSSSCCTTEEEEE--CCSCHHHHHHHHHHHHHHC
T ss_pred             c------------HHHHHHHhCCEEEEechhhCCCCCCCCEEEEE--ecCCHHHHHHHHHHHHHhC
Confidence            1            1234577899999987432      4789999  5678999999999999874

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.95  E-value=2.5e-27  Score=238.08  Aligned_cols=349  Identities=13%  Similarity=0.007  Sum_probs=217.4

Q ss_pred             CCCCEEEeccCCcccc-cCCCCCHHHHHHHHHHHHhcccc--ccccCChHHHHHHHHHHHhC--CCCCCEEEEeCCHHHH
Q 011669           96 ENGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHS--TVLYLNHAIADFAEALASKM--PGNLKVVFFTNSGTEA  170 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~~~~~~~~--~~~~~~~~~~~l~e~L~~~~--~~~~~~v~f~~sGseA  170 (480)
                      .+|+++||+..|.+.. .+ -.++.+.+|+.+.++...+.  ...+..+....+++.+.+.+  +.+.++|+++++++++
T Consensus        27 ~~G~~vi~l~~G~P~~~df-~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~  105 (395)
T d1xi9a_          27 KKGIKVIRLNIGDPVKFDF-QPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA  105 (395)
T ss_dssp             HTTCCCEECCCCCGGGTTC-CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred             HCCCCeEECCCCCCCCCCC-CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchh
Confidence            4688899999887543 22 25678999999988764221  11122233444555555443  3456789999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +.++++....  +++.|++.+|+|+.+...+.....             ..+.+|......|..|    .+++++.+.  
T Consensus       106 ~~~~~~~~~~--~Gd~vlv~~P~y~~~~~~~~~~g~-------------~~v~v~~~~~~~~~~d----~~~~~~~~~--  164 (395)
T d1xi9a_         106 LQLIFGALLD--PGDEILVPGPSYPPYTGLVKFYGG-------------KPVEYRTIEEEDWQPD----IDDIRKKIT--  164 (395)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEEEEGGGTSEEC----HHHHHHHCC--
T ss_pred             hhhhhhhhcC--CCCEEEEcCCccccchhhhhhcCC-------------EEEEEeccccccccch----HHHHHHhhc--
Confidence            9998876544  678999999999877665544432             2222221112223223    456665553  


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc---cccCCCcceeeeccccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF---EAHGVVPDIVTMAKGIG  327 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~---~~~~~~pDivt~sK~~g  327 (480)
                        ++++++++...+|++|.+ .+++.+++|.++|++||+++|.||+|..+.+.+ .....   ...+...-+.+|||.++
T Consensus       165 --~~~~~v~l~~P~NPTG~~-~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~~  240 (395)
T d1xi9a_         165 --DRTKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLTKDVPVIVMNGLSKVYF  240 (395)
T ss_dssp             --TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHCSSSCEEEEEESTTTTC
T ss_pred             --ccccEEEecCCCCCccch-hhHHHHHHHHhhhhhcCeeEEeccccccccccc-cccchhhcCCCCCEEEEeCcchhcc
Confidence              245555554447778876 488999999999999999999999998876554 22221   11111222347999999


Q ss_pred             -cCccccccccC--HHHHHhhcC---CCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 011669          328 -NGIPLGAVVTT--PEIAEVLTR---RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII  401 (480)
Q Consensus       328 -~G~pig~v~~~--~~~~~~l~~---~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~  401 (480)
                       .|+|+||++..  ++.+..+..   .....+++.+.+++.++..+++.  .+++.++.++.-+..++.+.+..++.+.+
T Consensus       241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  318 (395)
T d1xi9a_         241 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG--PMDYLKEYMKKLKERRDYIYKRLNEIPGI  318 (395)
T ss_dssp             CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             cchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence             69999997643  222222211   11224556677788877777752  23344443333333334444444445544


Q ss_pred             eeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          402 GDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       402 ~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      ....+. |+++|+++.....     ......+.+.+.++||++.||..|    .+++||+  ++.+++++++++++|.++
T Consensus       319 ~~~~p~gg~~~~~~l~~~~~-----~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris--~~~~~e~l~eal~rl~~~  391 (395)
T d1xi9a_         319 STTKPQGAFYIFPKIEVGPW-----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV--FLPPIEILEEAMDRFEKF  391 (395)
T ss_dssp             ECCCCCBSSEECCEECSCSC-----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHH
T ss_pred             eecCCCeeEEEeEECCCCCC-----CCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence            444343 7778888743211     111233344556789999998554    4689999  567899999999999999


Q ss_pred             Hhh
Q 011669          477 LSK  479 (480)
Q Consensus       477 l~~  479 (480)
                      +++
T Consensus       392 l~e  394 (395)
T d1xi9a_         392 MKE  394 (395)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            976

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.95  E-value=1.7e-26  Score=233.65  Aligned_cols=355  Identities=12%  Similarity=0.087  Sum_probs=225.7

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-----ChHHHHHHHHHHHhCCC--C-CCEEEEeCCHHHHHH
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-----NHAIADFAEALASKMPG--N-LKVVFFTNSGTEANE  172 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-----~~~~~~l~e~L~~~~~~--~-~~~v~f~~sGseA~~  172 (480)
                      .||+..|.+..   ..++.+.+|+.+.+.........|.     .+.++.+++.+.+.++.  . .++|++|+|+++|+.
T Consensus        28 ~I~L~~G~Pd~---~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~  104 (418)
T d2r5ea1          28 PLNLGQGFPDY---HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY  104 (418)
T ss_dssp             CEECSSSCCSS---CCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred             CEEccCCCCCC---CCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence            47888777653   3568899999998865421112232     34455566666655432  3 367999999999999


Q ss_pred             HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC--CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      .+++....  +++.|++.+++|..+............ ..+...  .+....      ...|..+    .++++...   
T Consensus       105 ~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~-~v~~~~~~~~~~~~------~~~~~~~----~~~~~~~~---  168 (418)
T d2r5ea1         105 ATIQGHVD--EGDEVIIIEPFFDCYEPMVKAAGGIPR-FIPLKPNKTGGTIS------SADWVLD----NNELEALF---  168 (418)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEE-EEECEESCCSSCEE------GGGEECC----HHHHHHHC---
T ss_pred             hhhhhccc--cccceeccccccchhhHHHHHcCCeEE-EEEecccccccchh------hhhhhhh----HHHHhhhh---
Confidence            99987654  788999999999887666554433211 000000  000000      0011112    34444433   


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc-cccCCCcc---eeeecccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPD---IVTMAKGI  326 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~-~~~~~~pD---ivt~sK~~  326 (480)
                       ...++++++.+.+|++|.+. +++.+++|.++|++||+++|.||+|..+...+.....+ ...+....   +.++||.+
T Consensus       169 -~~~~~~~~i~~p~NPtG~~~-s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~  246 (418)
T d2r5ea1         169 -NEKTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF  246 (418)
T ss_dssp             -CTTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT
T ss_pred             -hccccceecCCcCccccccc-cHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccc
Confidence             34677777777788888764 88999999999999999999999998876554221111 12222222   33789999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-----KDKLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      + .|+|+||+++++++++.+.......+++.+...+.++.+.+....     .+++.+++++.-+..++.+.+..++.++
T Consensus       247 ~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~  326 (418)
T d2r5ea1         247 SLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGM  326 (418)
T ss_dssp             TCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcCC
Confidence            8 899999999999998887765555667777777766665554311     1234444444444444444444444454


Q ss_pred             eeeEeccceeEEEEEecCCCc----CCCCHHHHHHHHHHHH-HcCceeeccCcC---------CCEEEEeCCCCCCHHHH
Q 011669          401 IGDVRGRGFLLGVEFVTDRQL----KTPAKAETLYIMDKMK-EMGVLVGKGGFY---------GNVFRITPPLCFTKEDA  466 (480)
Q Consensus       401 ~~~v~g~g~~~~i~~~~~~~~----~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~---------~~~iRi~p~~~~t~~~i  466 (480)
                      ....+..|+++|+++......    .........++++.|+ +.||.+.||..|         .+++||+  ++.+++++
T Consensus       327 ~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis--~~~~~e~l  404 (418)
T d2r5ea1         327 NPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYC--FFKKDENL  404 (418)
T ss_dssp             EEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEE--CCSCHHHH
T ss_pred             cccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEE--ecCCHHHH
Confidence            444555678889988542211    1112223456676665 569999998544         2689999  56789999


Q ss_pred             HHHHHHHHHHHh
Q 011669          467 DYLVDVMDYSLS  478 (480)
Q Consensus       467 d~~l~~l~~~l~  478 (480)
                      ++++++|++.+.
T Consensus       405 ~~a~~rl~~~lg  416 (418)
T d2r5ea1         405 QKAAEILRKWKG  416 (418)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999999875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.95  E-value=7.4e-27  Score=231.13  Aligned_cols=327  Identities=13%  Similarity=0.114  Sum_probs=214.4

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~  177 (480)
                      ...+|||++|.  +.+| .+|.+.+|+.+.+..+    ..|+++...+|++.|+++++.+.++|++++++++++..++..
T Consensus        21 p~~~idls~~~--np~~-~p~~~~~a~~~~~~~~----~~Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~   93 (355)
T d1lc5a_          21 PDQLLDFSANI--NPLG-MPVSVKRALIDNLDCI----ERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASG   93 (355)
T ss_dssp             GGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred             hhheEEccCCC--CCCC-CCHHHHHHHHHHHHHh----ccCCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhh
Confidence            34589998774  3456 5789999999877664    235555557899999999988788899999999988876653


Q ss_pred             HHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669          178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (480)
Q Consensus       178 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~  257 (480)
                      .    .++.+++..+.|+.+.........           ++..++++.  ...|..+     +.+++.+.    .++++
T Consensus        94 ~----~~~~~~v~~p~~~~~~~~~~~~~~-----------~~~~v~~~~--~~~~~~~-----~~~~~~~~----~~~~~  147 (355)
T d1lc5a_          94 L----KPRRAMIVTPGFAEYGRALAQSGC-----------EIRRWSLRE--ADGWQLT-----DAILEALT----PDLDC  147 (355)
T ss_dssp             H----CCSEEEEEESCCTHHHHHHHHTTC-----------EEEEEECCG--GGTTCCC-----TTHHHHCC----TTCCE
T ss_pred             h----ccccccccCCccceeccccccccc-----------cceeeeeec--cCCccce-----eeeeeccc----cccce
Confidence            2    345556667887655444333221           233333221  1122222     22333332    35666


Q ss_pred             EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc-ccccCCCcceeeeccccc-cCcccccc
Q 011669          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTMAKGIG-NGIPLGAV  335 (480)
Q Consensus       258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~-~~~~~~~pDivt~sK~~g-~G~pig~v  335 (480)
                      +++.+.+|++|.+ .+.+.+++|.++|++|++++|+||+|..|...+..... ....+....+.++||.++ +|+|+||+
T Consensus       148 v~l~nP~NPtG~~-~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~  226 (355)
T d1lc5a_         148 LFLCTPNNPTGLL-PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYL  226 (355)
T ss_dssp             EEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEE
T ss_pred             eeeecccCccccc-chhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccce
Confidence            6666668888876 48899999999999999999999999988665522211 111222233448999999 89999999


Q ss_pred             ccCHH-HHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEE
Q 011669          336 VTTPE-IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV  413 (480)
Q Consensus       336 ~~~~~-~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  413 (480)
                      +++++ +.+.+..  ...+++.+.+++.++.++|+.-.. ....+.+++..+++.+.|    .+.+.+...++.|+++|+
T Consensus       227 i~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~p~~~~f~~~  300 (355)
T d1lc5a_         227 VNSDDAAMARMRR--QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQAL----CQLPLLTVYPGRANYLLL  300 (355)
T ss_dssp             ECCCHHHHHHHHH--HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH----HTSTTEEECCCSSSEEEE
T ss_pred             eccchhhhHHHHh--hcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHH----hhcCCcEECCCCCEEEEE
Confidence            99865 4444442  235577888888888887752110 112222333333333333    334445555667888888


Q ss_pred             EEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          414 EFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                      .+..+          ..++++.|+++||+++++..|    .+++||+.   .+++|+++++++|+++|
T Consensus       301 ~~~~~----------~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~---~~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         301 RCERE----------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERLLAALRNVL  355 (355)
T ss_dssp             EESCT----------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHC
T ss_pred             ECCCC----------HHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEe---CCHHHHHHHHHHHHHhC
Confidence            87432          234778899999999987544    37999994   38999999999999864

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.3e-26  Score=230.69  Aligned_cols=362  Identities=11%  Similarity=0.065  Sum_probs=223.4

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc--c--cccccCChHHHHHHHHHHHhCCCCC---CEEEEeCCHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--H--STVLYLNHAIADFAEALASKMPGNL---KVVFFTNSGTEA  170 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~--~--~~~~~~~~~~~~l~e~L~~~~~~~~---~~v~f~~sGseA  170 (480)
                      +..+||+..|.+..   ..++.|.+|+++++....  +  +...+..+....+++.+.+.++...   ++|++|+|+++|
T Consensus        24 ~~dvI~l~~G~p~~---~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~a  100 (418)
T d1w7la_          24 EHDVVNLGQGFPDF---PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA  100 (418)
T ss_dssp             TSCCEECCCCSCSS---CCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred             CCCCEECCCCCCCC---CCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHH
Confidence            44579998888754   356889999998876431  1  1112223344555555555444332   479999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      +..+++....  +++.|++.+++|+.+.................+. +.....  ......|..|    .+++....   
T Consensus       101 l~~~~~~l~~--~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~-~~~~~~--~~~~~~~~~d----~~~~~~~~---  168 (418)
T d1w7la_         101 LFTAFQALVD--EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPG-PIQNGE--LGSSSNWQLD----PMELAGKF---  168 (418)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEC-C---CC--SEEGGGEECC----HHHHHHHC---
T ss_pred             HHHHHHhhcc--CCceeeccccccchhHHHHHHcCCEeeccccccc-cccccc--cccccCcccc----hhhhhccc---
Confidence            9999987654  6789999999998876655444332111000000 000000  0000011111    22332222   


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccc-cCC---Ccceeeecccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA-HGV---VPDIVTMAKGI  326 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~-~~~---~pDivt~sK~~  326 (480)
                       .+.++++++...+|++|.+ .+++.+++|.++|++|++++|.||+|.+|.+.+........ .+.   ..-+.++||.+
T Consensus       169 -~~~~~~i~~~~p~NPtG~~-~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  246 (418)
T d1w7la_         169 -TSRTKALVLNTPNNPLGKV-FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF  246 (418)
T ss_dssp             -CTTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT
T ss_pred             -cccccceeccCcCCccccc-ccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccc
Confidence             2366666666667777876 48889999999999999999999999998776633332222 122   22244789999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-----DKLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~-----~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      + .|+|+||+++++++++.+.......+++.+.+++.++.++|.....     .++..+.++.-+..++.+.+...+.++
T Consensus       247 ~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~  326 (418)
T d1w7la_         247 SATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL  326 (418)
T ss_dssp             TCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCCCcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCC
Confidence            8 7999999999999988877655556778888888888877754221     223333333333344444444444454


Q ss_pred             eeeEeccceeEEEEEecCC-----CcCCCCHHHHHHHHHH-HHHcCceeeccCcC---------CCEEEEeCCCCCCHHH
Q 011669          401 IGDVRGRGFLLGVEFVTDR-----QLKTPAKAETLYIMDK-MKEMGVLVGKGGFY---------GNVFRITPPLCFTKED  465 (480)
Q Consensus       401 ~~~v~g~g~~~~i~~~~~~-----~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~~~---------~~~iRi~p~~~~t~~~  465 (480)
                      ....+..|+++|+++....     .....+......+++. |+++||++.||..|         .++|||+  ++.++++
T Consensus       327 ~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis--~~~~~~~  404 (418)
T d1w7la_         327 KPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC--FVKDEAT  404 (418)
T ss_dssp             EEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE--CCCCHHH
T ss_pred             cccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEE--EcCCHHH
Confidence            3334445778898874210     0000011123345554 56789999988544         3689999  6679999


Q ss_pred             HHHHHHHHHHHHh
Q 011669          466 ADYLVDVMDYSLS  478 (480)
Q Consensus       466 id~~l~~l~~~l~  478 (480)
                      +++++++|++...
T Consensus       405 l~~a~~rl~~~~~  417 (418)
T d1w7la_         405 LQAMDEKLRKWKV  417 (418)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998653

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=3.8e-26  Score=227.65  Aligned_cols=336  Identities=17%  Similarity=0.173  Sum_probs=214.2

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-ChHHHHHHHHHHHhC------CCCCCEEEEeCCHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSGTE  169 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~l~e~L~~~~------~~~~~~v~f~~sGse  169 (480)
                      .|+.+|||..|.+..  . .++.+++++.+.+....+   .|. .....+|++.+++++      +.+.+++++|+|+++
T Consensus        26 ~G~~vI~l~~G~p~~--~-~p~~i~~~~~~~~~~~~~---~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~   99 (375)
T d1o4sa_          26 KGEDVINLTAGEPDF--P-TPEPVVEEAVRFLQKGEV---KYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQ   99 (375)
T ss_dssp             TTCCCEECCCSSCSS--C-CCHHHHHHHHHHHTTCCC---CCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHH
T ss_pred             CCCCeEECCCcCCCC--C-CCHHHHHHHHHHHhcCCc---CCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHH
Confidence            467789998887653  2 578999999998876432   122 223445555555443      345678999999999


Q ss_pred             HHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       170 A~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      |+..+++....  +++.|++.+++|..+........             ......+......|..|    .+.++...  
T Consensus       100 al~~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~----~~~~~~~~--  158 (375)
T d1o4sa_         100 ALFNAFMALLD--PGDEVIVFSPVWVSYIPQIILAG-------------GTVNVVETFMSKNFQPS----LEEVEGLL--  158 (375)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECCGGGTTCCC----HHHHHHTC--
T ss_pred             HHHHHHHHHhC--CCCEEEEccCccccchhhhhccc-------------cccccccccccccccch----hHHHHHhh--
Confidence            99999986644  67889999999976654433222             11111111112222223    23333332  


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc---ccccCCCcceeeecccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG---FEAHGVVPDIVTMAKGI  326 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~---~~~~~~~pDivt~sK~~  326 (480)
                        ..+++++++...+|++|.+. +.+.+++|.++|++|+++||.||+|..+...+.....   .+.++...-+.++||.+
T Consensus       159 --~~~~~~~~l~nP~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  235 (375)
T d1o4sa_         159 --VGKTKAVLINSPNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH  235 (375)
T ss_dssp             --CTTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT
T ss_pred             --ccCccEEEEeCCCCCccCCC-CHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhc
Confidence              23555555555578888764 8899999999999999999999999877554421111   12233344455899999


Q ss_pred             c-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR  405 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  405 (480)
                      + .|+|+||+++++++++.+.......+...+...+..+...++.. .....+..++..+.+.+.|++.    ++.....
T Consensus       236 ~l~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~l~~~----g~~~~~p  310 (375)
T d1o4sa_         236 SMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM----GVKFVEP  310 (375)
T ss_dssp             TCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT----TCCCCCC
T ss_pred             cCCccccccccccccchhhhhhhhccccccccccchhhhhhhcccc-hhhhHHHHHHHHHHHHHHHHhc----CceEecC
Confidence            9 89999999999998887765444444445555554444333211 1234445555555555555543    3322223


Q ss_pred             ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY--GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ..|+++|+++..+         ..+.+.+.+.++||++.||..|  .+++||+  +..+++++++++++|+++++
T Consensus       311 ~gg~f~~~~~~~~---------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis--~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         311 EGAFYLFFKVRGD---------DVKFCERLLEEKKVALVPGSAFLKPGFVRLS--FATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             SBSSEEEEECSSC---------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHHHHHHT
T ss_pred             CccEEEEEECCCC---------HHHHHHHHHHhCCEEEEEccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHhc
Confidence            3467788887321         1233444456789999998654  4789999  56789999999999999885

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=9.7e-27  Score=235.59  Aligned_cols=354  Identities=11%  Similarity=0.044  Sum_probs=222.7

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-----cccccCChHHHHHHHHHHHhCC---CCCCEEEEeCCHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-----STVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGT  168 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~l~e~L~~~~~---~~~~~v~f~~sGs  168 (480)
                      .+..+|||..|.+...+ ...+.+.+++.+.++....     +...+..+.+..+++.+.+..+   .+.++|++|+|++
T Consensus        36 ~~~~~I~l~~G~Pd~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~  114 (420)
T d1vp4a_          36 ADKDAISFGGGVPDPET-FPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ  114 (420)
T ss_dssp             TSTTCEECCCCSCCGGG-SCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred             CCCCcEecCCcCCCCcc-CCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence            56679999988765432 2345667777776654322     2222223334444444444432   3567899999999


Q ss_pred             HHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       169 eA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +|+..++.....  +++.|++.+++|...........             .....+|..   +.+.|.+.....+++...
T Consensus       115 ~al~~~~~~~~~--~Gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~~~~~---~~~~~~~~l~~~~~~~~~  176 (420)
T d1vp4a_         115 QALDLIGKLFLD--DESYCVLDDPAYLGAINAFRQYL-------------ANFVVVPLE---DDGMDLNVLERKLSEFDK  176 (420)
T ss_dssp             HHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTT-------------CEEEEEEEE---TTEECHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhhhc--cccccccccccccchhHHHHHHh-------------hhccccccc---ccccccchhhhhhhhhHH
Confidence            999999886543  67899999999987655443322             222222211   011121111111111111


Q ss_pred             ccC-CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc---cccCCCcceeeecc
Q 011669          249 FGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF---EAHGVVPDIVTMAK  324 (480)
Q Consensus       249 ~~~-~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~---~~~~~~pDivt~sK  324 (480)
                      ... .+..+++++.+.+|++|.+ .+.+.+++|.++|++|++++|+||+|..|.+.+......   ...+...-+.+++|
T Consensus       177 ~~~~~~~~~~~~~~~p~NPtG~~-~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk  255 (420)
T d1vp4a_         177 NGKIKQVKFIYVVSNFHNPAGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSK  255 (420)
T ss_dssp             TTCGGGEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTT
T ss_pred             HhhccccceeeEecCCCCccchh-hhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEecccc
Confidence            111 2234455565667778876 589999999999999999999999999887666322111   11222222336778


Q ss_pred             ccccCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          325 GIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK----DKLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       325 ~~g~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~----~~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                      .++.|+|+||+++++++++.+.+.....+.+.+.+.++++...++....    .+..+..++..+.+.+.|++.....+.
T Consensus       256 ~~~~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g  335 (420)
T d1vp4a_         256 VLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPG  335 (420)
T ss_dssp             TTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTT
T ss_pred             ccccccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCC
Confidence            8878999999999999998887655556667777877777766653221    123344555555566666655444444


Q ss_pred             eeeEecc-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHH
Q 011669          401 IGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVM  473 (480)
Q Consensus       401 ~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l  473 (480)
                      +....+. |+++|+++....+        ...+.+.|+++||++.||..|      .+++||+.+ ..+++++++++++|
T Consensus       336 ~~~~~p~gg~f~~~~~~~~~d--------~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a~~rL  406 (420)
T d1vp4a_         336 VKWVKSEGGLFIWLTLPEGFD--------TWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC-LPPDEKIVEGIKRL  406 (420)
T ss_dssp             CEECCCSBSSEEEEECCTTCC--------TTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS-SSCHHHHHHHHHHH
T ss_pred             cEEecCCceEEEEEECCCCCC--------HHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC-cCCHHHHHHHHHHH
Confidence            4444444 5678888743211        234667889999999998544      368999954 36889999999999


Q ss_pred             HHHHhh
Q 011669          474 DYSLSK  479 (480)
Q Consensus       474 ~~~l~~  479 (480)
                      .+++++
T Consensus       407 ~~~l~~  412 (420)
T d1vp4a_         407 REVVLE  412 (420)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=2.1e-25  Score=223.25  Aligned_cols=342  Identities=15%  Similarity=0.103  Sum_probs=214.9

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-ccccccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE  172 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~~  172 (480)
                      .+|..+||+..|.+..   -.++.+.+++.+...... +....+..+....+++.+.+..+  .+.++|++|+|+++++.
T Consensus        25 ~~g~~vi~l~~G~p~~---~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~  101 (389)
T d2gb3a1          25 KRGVRIHHLNIGQPDL---KTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL  101 (389)
T ss_dssp             HTTCEEEECSSCCCCS---CCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred             HcCCCEEECCCCCCCC---CCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccc
Confidence            3588899998887753   236778888876443321 11112223344555555555544  34678999999999999


Q ss_pred             HHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 011669          173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS  252 (480)
Q Consensus       173 ~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~  252 (480)
                      .+++....  +++.|++.+++|...........             +..+..+......+..+     +.+...    ..
T Consensus       102 ~~~~~l~~--~gd~V~i~~P~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~-----~~~~~~----~~  157 (389)
T d2gb3a1         102 FSFAVIAN--PGDEILVLEPFYANYNAFAKIAG-------------VKLIPVTRRMEEGFAIP-----QNLESF----IN  157 (389)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCTHHHHHHHHHT-------------CEEEEEECCGGGTSCCC-----TTGGGG----CC
T ss_pred             cccccccc--CCCeEEEeCCCCccccccccccC-------------ccccccccccccccchh-----hhhhhh----cc
Confidence            99886654  67899999999977655444332             22222221111111111     112211    13


Q ss_pred             CceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc--CCCcceeeeccccc-cC
Q 011669          253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH--GVVPDIVTMAKGIG-NG  329 (480)
Q Consensus       253 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~--~~~pDivt~sK~~g-~G  329 (480)
                      ++++++++...+|++|.+. +.+.+++|.++|++||+++|.||+|..+...+ ........  +...-+.++||.++ .|
T Consensus       158 ~~~~~~~l~nP~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~-~~~~~~~~~~~~~~v~~s~sK~~~~~G  235 (389)
T d2gb3a1         158 ERTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSIESDKVVVIDSVSKKFSACG  235 (389)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCCTTEEEEEESTTTTTCGG
T ss_pred             cCccEEEeCCCCccccccc-hHHHHHHHHhhcccCCEEEEEecccccccccc-ccccccccccccccccccccccccCcc
Confidence            4677777666677888764 88999999999999999999999999887666 22221111  11122336789998 69


Q ss_pred             ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-eccc
Q 011669          330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRG  408 (480)
Q Consensus       330 ~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g  408 (480)
                      +|+||++++.+.+...........++.+++.+.++.+.+..  .+.+.+.+++..+..++.+.+..++++....+ ...|
T Consensus       236 lRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g  313 (389)
T d2gb3a1         236 ARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNL--DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGA  313 (389)
T ss_dssp             GCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBS
T ss_pred             cceeeeeccchhHHHHHhhhhhccccccccccccccccccc--cchhcccccccccccchhhhhhhhhhccccccCCCce
Confidence            99999999765433222222334556677777777766642  33445555554444555555555555654333 4557


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHHHH------cCceeeccCcC-------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKE------MGVLVGKGGFY-------GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~------~Gv~v~~~~~~-------~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      +++|+++...         ...++++.|++      +||.+.|+..+       .+++||+  ++.+++++++++++|.+
T Consensus       314 ~~~~~~lp~~---------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis--~~~~~~~l~~a~~~L~~  382 (389)
T d2gb3a1         314 FYITAELPVE---------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA--CVLEKDLLSRAIDVLME  382 (389)
T ss_dssp             SEEEEECSSS---------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE--CCSCHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCC---------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE--EcCCHHHHHHHHHHHHH
Confidence            7888887321         13456666654      47778776322       4689999  56899999999999999


Q ss_pred             HHhh
Q 011669          476 SLSK  479 (480)
Q Consensus       476 ~l~~  479 (480)
                      ++++
T Consensus       383 ~lk~  386 (389)
T d2gb3a1         383 GLKM  386 (389)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.1e-24  Score=215.93  Aligned_cols=342  Identities=9%  Similarity=-0.008  Sum_probs=205.4

Q ss_pred             EeccCCcccccCCCCCHHHHHHHHHHHHhcccccc-ccCChHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHHHHHHHH
Q 011669          102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus       102 lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~l~e~L~~~~~--~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      |+|..|.+..   -.+|.|.+|+.+.+....+... ....+....+++.+.++++  .+.++|++|+|+++++..++...
T Consensus         2 ~~~~~~~~df---~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l   78 (361)
T d1d2fa_           2 LPFTISDMDF---ATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW   78 (361)
T ss_dssp             EECCSSSCSS---CCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS
T ss_pred             cCcCCCCCCC---CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhc
Confidence            6666666653   3579999999998875432111 1112345556666666554  35678999999999999988865


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCc-CCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPY-RGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~-~~~~~~d~~~~~~~le~~i~~~~~~~~a~  257 (480)
                      ..  +++.|++.+++|.++........             ...++++... .+.|..|    .+.+++.+.   ..++++
T Consensus        79 ~~--~gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~~d----~~~~~~~~~---~~~~~~  136 (361)
T d1d2fa_          79 SE--TGEGVVIHTPAYDAFYKAIEGNQ-------------RTVMPVALEKQADGWFCD----MGKLEAVLA---KPECKI  136 (361)
T ss_dssp             SC--TTCEEEEEESCCHHHHHHHHHTT-------------CEEEEEECEECSSSEECC----HHHHHHHHT---STTEEE
T ss_pred             cc--cccccccccccccchhHHHHhhc-------------ceEEeecccccccccccc----cccchhhcc---cCCcee
Confidence            43  57899999999977654433322             1111111110 1111123    566776665   346777


Q ss_pred             EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccccc--CCCcceeeeccccc-cCccccc
Q 011669          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH--GVVPDIVTMAKGIG-NGIPLGA  334 (480)
Q Consensus       258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~--~~~pDivt~sK~~g-~G~pig~  334 (480)
                      +++.+.+|++|.+ .+.+.+++|.++|+++|+++|+||+|.+|.+.+.....+...  +....+.++||.++ +|+|+||
T Consensus       137 i~l~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~  215 (361)
T d1d2fa_         137 MLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAY  215 (361)
T ss_dssp             EEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEE
T ss_pred             EEecccccccccc-cchhhhhhhhhhhhhhheeeeeccccccccccccccccccccccccccccccccccccccccccee
Confidence            7777778888876 588999999999999999999999999886554211111111  12223346799998 7999999


Q ss_pred             cccCH-HHHHhhcCC-Ccc-ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HhHHhcCceeeEecc-ce
Q 011669          335 VVTTP-EIAEVLTRR-NYF-NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT-ALKDKYGIIGDVRGR-GF  409 (480)
Q Consensus       335 v~~~~-~~~~~l~~~-~~~-~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~-~l~~~~~~~~~v~g~-g~  409 (480)
                      ++.+. ...+..... ... ...+.+..++++++..++..  +++.+..+......++.+. .+.+..+.+....+. |+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~  293 (361)
T d1d2fa_         216 GIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTY  293 (361)
T ss_dssp             EEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCS
T ss_pred             eecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhcc--chhhhcccccchhhHHHHHHHhhhhcccccccccCcee
Confidence            87653 332222111 111 22223344555555555432  2233333222222222222 222223333323333 66


Q ss_pred             eEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          410 LLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       410 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ++|+++....       ....++++.|++ .||++.||..|    .+++||+  +..+++++++++++|.++++++
T Consensus       294 ~~~~~l~~~~-------~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis--~~~~~e~l~~al~rl~~~l~~l  360 (361)
T d1d2fa_         294 LAWLDLRPLN-------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN--AGCPRSKLEKGVAGLINAIRAV  360 (361)
T ss_dssp             EEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEccCCC-------CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEE--EcCCHHHHHHHHHHHHHHHHhc
Confidence            7788774221       124567777655 59999987544    3689999  4578999999999999999863

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.94  E-value=4.7e-25  Score=222.49  Aligned_cols=354  Identities=12%  Similarity=0.012  Sum_probs=210.9

Q ss_pred             eCCCCEEEeccCCcccccCC-CCCHHHHHHHHHHHHhcc---ccccccCChHHHHHHHHHHHhC--------CCCCCEEE
Q 011669           95 DENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKM--------PGNLKVVF  162 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~l~e~L~~~~--------~~~~~~v~  162 (480)
                      ...++.+|||..|.+..... ...+.+++++.+.+....   +....+..+.+..+++.+.+.+        +.+.++|+
T Consensus        26 ~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~  105 (412)
T d1bw0a_          26 SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV  105 (412)
T ss_dssp             CCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred             CCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEE
Confidence            34556789998876543221 234678888887766431   1111222234444555554442        23467899


Q ss_pred             EeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHH
Q 011669          163 FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKD  242 (480)
Q Consensus       163 f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~  242 (480)
                      +|+|+++|+..+++....  +++.|++.+|+|+++...+...             |+..+.+|....+.|..+    .++
T Consensus       106 it~G~~~al~~~~~~l~~--~Gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~~~~~~~~~~~----~~~  166 (412)
T d1bw0a_         106 LCSGGSHGILMAITAICD--AGDYALVPQPGFPHYETVCKAY-------------GIGMHFYNCRPENDWEAD----LDE  166 (412)
T ss_dssp             EESHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEEEEGGGTTEEC----HHH
T ss_pred             Eecccccchhhhhhhhhc--cccceeeeeccchhhhhhhhcc-------------Cccccccccccccccchh----hHH
Confidence            999999999999986543  6789999999998776554433             222233222222223223    455


Q ss_pred             HHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc-c---cCCCcc
Q 011669          243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE-A---HGVVPD  318 (480)
Q Consensus       243 le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~-~---~~~~pD  318 (480)
                      +++.+.    ..++++++...+|++|.+ .+.+.+++|.++|++|++++|+||+|.+|.+.|....... .   ......
T Consensus       167 l~~~~~----~~~~~~~l~np~NPtG~~-~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
T d1bw0a_         167 IRRLKD----DKTKLLIVTNPSNPCGSN-FSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVP  241 (412)
T ss_dssp             HHHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCC
T ss_pred             HHhhhh----cccccccccccccccccc-chhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccc
Confidence            655543    356666666666777766 4889999999999999999999999999977763221111 1   111112


Q ss_pred             e---eeeccccc-cCccccccccCHH------HHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 011669          319 I---VTMAKGIG-NGIPLGAVVTTPE------IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLK  388 (480)
Q Consensus       319 i---vt~sK~~g-~G~pig~v~~~~~------~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~  388 (480)
                      .   .++||.++ .|+|+||++++++      ++..... ....+.+.++..++++.+.+.. ..+++.+.+++..+..+
T Consensus       242 ~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r  319 (412)
T d1bw0a_         242 RVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKR-VGMLVCGPCTVVQAALGEALLN-TPQEHLDQIVAKIEESA  319 (412)
T ss_dssp             EEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHH-HHHHHTCSCHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHH
T ss_pred             cccccccCccCccCCCCcccccccchhhcchhhhhhhcc-ccccccCCchhhhhhccccccc-ccccccccccchhHHHH
Confidence            2   25899999 7999999988643      2222211 1123334445555544443321 12233333333333344


Q ss_pred             HHHHHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC--CCEEEEeCCCCCCHH
Q 011669          389 ERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY--GNVFRITPPLCFTKE  464 (480)
Q Consensus       389 ~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~~  464 (480)
                      +.+.+...+...+... ...|+++|+.+......   ......++++.|+ +.||++.||..|  .+++||+  ++.+++
T Consensus       320 ~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~---~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis--~~~~~e  394 (412)
T d1bw0a_         320 MYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYR---DIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT--TTRPVE  394 (412)
T ss_dssp             HHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBS---SCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHH
T ss_pred             HHHHHHHHHhcCceecCCCCceEEEEeCChhhcC---CCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EcCCHH
Confidence            4444433333333333 34467778777422110   0111345666655 569999998654  3689999  678999


Q ss_pred             HHHHHHHHHHHHHhh
Q 011669          465 DADYLVDVMDYSLSK  479 (480)
Q Consensus       465 ~id~~l~~l~~~l~~  479 (480)
                      ++++++++|++++++
T Consensus       395 ~l~eal~Rl~~~l~~  409 (412)
T d1bw0a_         395 VYREAVERIKAFCQR  409 (412)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999875

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.1e-25  Score=219.32  Aligned_cols=338  Identities=13%  Similarity=0.066  Sum_probs=209.8

Q ss_pred             EEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHh
Q 011669          101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL  180 (480)
Q Consensus       101 ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~  180 (480)
                      +|||.+-..+.    .+|+|++||.++...  . ...+..+...+|+++|+++++  .+.++|++|||+||+.||+.++.
T Consensus         1 ~~~~~~~~~t~----p~p~v~~A~~~a~~g--~-~~yg~~p~~~~le~~lA~~~G--~~~~~~~~sGt~A~~~al~a~~~   71 (343)
T d1m6sa_           1 MIDLRSDTVTK----PTEEMRKAMAQAEVG--D-DVYGEDPTINELERLAAETFG--KEAALFVPSGTMGNQVSIMAHTQ   71 (343)
T ss_dssp             CEECSCGGGCC----CCHHHHHHHHTCCCC--C-GGGTCCHHHHHHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHCC
T ss_pred             CcccccccCCC----CCHHHHHHHHhhhcC--C-cccCCCHHHHHHHHHHHHHHC--CCeEEEeCCHHHHHHHHHHHHhc
Confidence            37887766554    579999999764321  1 123457888999999999995  46789999999999999997765


Q ss_pred             hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCceEEE
Q 011669          181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVAGF  258 (480)
Q Consensus       181 ~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~a~v  258 (480)
                        .++.++.....++.............          ......+... ..  .|    .+.+++.+....  ...+..+
T Consensus        72 --~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~--~~----~~~~~~~i~~~~~~~~~~~~~  132 (343)
T d1m6sa_          72 --RGDEVILEADSHIFWYEVGAMAVLSG----------VMPHPVPGKN-GA--MD----PDDVRKAIRPRNIHFPRTSLI  132 (343)
T ss_dssp             --TTCEEEEETTCHHHHSSTTHHHHHTC----------CEEEEECEET-TE--EC----HHHHHHHSCCSCTTSCCEEEE
T ss_pred             --cCCceeccccccceeeeccccccccc----------ceeecccccc-Cc--cC----HHHHHHhhhhhhccccccccc
Confidence              56677777766654443332222111          1111111100 00  12    455666665321  2356667


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCcccccccc
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVT  337 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~pig~v~~  337 (480)
                      +++..+++.|...++.+++++|+++|++||+++|+||+++++.... ..+.........+..+++|..+ +|.+.++++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  211 (343)
T d1m6sa_         133 AIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIA-SGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVG  211 (343)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHH-HCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEE
T ss_pred             ccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccc-cccchhhhccccccccccccccccccccccccc
Confidence            7777666655566788999999999999999999999998765433 2222222223345566777666 4577888888


Q ss_pred             CHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEe-ccceeEEEEEe
Q 011669          338 TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-GRGFLLGVEFV  416 (480)
Q Consensus       338 ~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~  416 (480)
                      ..+.+...........++....+..++.................+...++.+.+.++.    ...... ....++++.+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~  287 (343)
T d1m6sa_         212 DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIG----YSVNPEDVKTNMVILRTD  287 (343)
T ss_dssp             CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHT----CBCCGGGCCSSEEEEECT
T ss_pred             cHHHHhhhHhhCcccccccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhc----cCccCCCCCceEEEEEeC
Confidence            8887655443221122222222222222222222222334444455555555555542    111112 22456666653


Q ss_pred             cCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          417 TDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ....       ...++.+.|+++||++.+.+  .+.+||+++..+|+||||+++++|+++++++
T Consensus       288 ~~~~-------~a~~l~~~L~~~Gi~v~~~~--~~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         288 NLKV-------NAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             TSSS-------CHHHHHHHHHHHTEECEEEE--TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcc-------cHHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            2211       24678999999999998865  5789999999999999999999999999863

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=8.1e-26  Score=220.07  Aligned_cols=336  Identities=13%  Similarity=0.020  Sum_probs=194.0

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR  179 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar  179 (480)
                      .+|||.+.    |.++.||+|++|+.++..  .|....+.++...+++++++++++.+ ..++|++||||||+.|++.++
T Consensus         3 ~~~~f~s~----n~~g~~P~v~~A~~~a~~--~~~~~~~~~~~~~~l~~~la~~~g~~-~~v~f~~sGt~An~~a~~~~~   75 (345)
T d1v72a1           3 PALGFSSD----NIAGASPEVAQALVKHSS--GQAGPYGTDELTAQVKRKFCEIFERD-VEVFLVPTGTAANALCLSAMT   75 (345)
T ss_dssp             CCCBCSCG----GGCCCCHHHHHHHHHTTS--SCCCSTTCSHHHHHHHHHHHHHHTSC-CEEEEESCHHHHHHHHHHTSC
T ss_pred             CCcCcCCC----CCCCCCHHHHHHHHHHhc--cCccccCCCHHHHHHHHHHHHHHCCC-cEEEECCchHHHHHHHHHHHH
Confidence            36788763    345689999999988653  23444567888999999999999753 568999999999999999776


Q ss_pred             hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCceEE
Q 011669          180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVAG  257 (480)
Q Consensus       180 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~a~  257 (480)
                      .  ..+.++... ..|.............         +....+.+....+.  .+    .+++++.+....  ...+..
T Consensus        76 ~--~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--~~----~~~l~~~~~~~~~~~~~~~~  137 (345)
T d1v72a1          76 P--PWGNIYCHP-ASHINNDECGAPEFFS---------NGAKLMTVDGPAAK--LD----IVRLRERTREKVGDVHTTQP  137 (345)
T ss_dssp             C--TTEEEEECT-TSHHHHSSTTHHHHHT---------TSCEEEECCCGGGC--CC----HHHHHHHTTSSTTCTTSCEE
T ss_pred             h--cCCcccccc-ccceeeechhhHHHhc---------Cccccccccccccc--cc----HHHhhhhhcccccccccccc
Confidence            5  233333322 2222222111111100         11111111111111  12    567777775321  224556


Q ss_pred             EEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC--CcceeeeccccccCcccccc
Q 011669          258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV--VPDIVTMAKGIGNGIPLGAV  335 (480)
Q Consensus       258 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~--~pDivt~sK~~g~G~pig~v  335 (480)
                      ++++.++++.+....+.++++++.++|++||+++++|++|+++.+++ ..+.......  ..+..+++|..+++...+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (345)
T d1v72a1         138 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVS-LGCSPAEMTWKAGVDALSFGATKNGVLAAEAI  216 (345)
T ss_dssp             EEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHH-HTCCTTTTTGGGTCCEEEECCGGGTCSSCEEE
T ss_pred             eeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccc-cccCHHHhhccccccccccCcccccccccccc
Confidence            66666665555555677889999999999999999999999766554 3333333333  34455667766655444433


Q ss_pred             ccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE-eccceeEEE
Q 011669          336 VTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLGV  413 (480)
Q Consensus       336 ~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i  413 (480)
                      ... ..................+ ....++.+++..+.+....+ ......++...+.+...+++.+... ...+.++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~aa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~  294 (345)
T d1v72a1         217 VLFNTSLATEMSYRRKRAGHLSS-KMRFLSAQIDAYLTDDLWLR-NARKANAAAQRLAQGLEGLGGVEVLGGTEANILFC  294 (345)
T ss_dssp             EESSGGGHHHHHHHHHHTTCCCS-STHHHHHHHHHHTSTTHHHH-HHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEE
T ss_pred             ccchhhhhhhccccccccccccc-hhhHHhhhhHHHHHHhhhhh-hccchhhHHHHHHHHHHhcCCcEeccCCCccEEEE
Confidence            333 3322222211111111222 22222333333333332222 2222233333333433444544333 233556666


Q ss_pred             EEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          414 EFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      .+.             ..+.+.|+++|+.+.+.....+.+||+++..+|+||||+++++|+++
T Consensus       295 ~~~-------------~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         295 RLD-------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             EEC-------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             EcC-------------HHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            651             34678899999998765545689999999999999999999999874

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.93  E-value=1.3e-25  Score=230.26  Aligned_cols=360  Identities=16%  Similarity=0.126  Sum_probs=215.7

Q ss_pred             CCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHH
Q 011669           96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI  175 (480)
Q Consensus        96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Al  175 (480)
                      ..|+.+|||.+..++..++|   ....++    ... . .....++...+|+++++++++  .+.++|++||++||+.|+
T Consensus        39 ~~~~~~id~~sd~~t~~~~~---~~~a~~----~~g-d-~~y~~~~~~~~le~~~a~l~g--~~~~~~~~sGt~A~~~a~  107 (465)
T d1ax4a_          39 PSSAVYIDLLTDSGTNAMSD---HQWAAM----ITG-D-EAYAGSRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILF  107 (465)
T ss_dssp             CGGGCSEECSCSSSCCCEEH---HHHHHH----HTC-C-CCSSSCHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHH
T ss_pred             CccCeeeecccccchhhhhH---HHHHHH----hhh-h-hhhccChHHHHHHHHHHHHHC--CCEEEECCCcHHHHHHHH
Confidence            34778999998887765443   222222    221 1 112236778899999999994  688999999999999999


Q ss_pred             HHHHhhc-----CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          176 MMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       176 k~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      ++++.+.     .+..++.  +.+|+.+..+....+..... ............+++..+.  .|    .++++++|+..
T Consensus       108 ~~~~~~g~~~~~~~~~~i~--~~~h~~t~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~--~d----~~~l~~~i~~~  178 (465)
T d1ax4a_         108 PVLLKYKQKEGKAKNPVFI--SNFHFDTTAAHVELNGCKAI-NIVTEKAFDSETYDDWKGD--FD----IKKLKENIAQH  178 (465)
T ss_dssp             HHHHHHHHHTTCCSSCEEE--ESSCCHHHHHHHHHTTCEEE-ECBCGGGGCTTSCCTTTTC--BC----HHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCeEEe--ccchhhhhHHHHHHcCCeee-cccccccCCCCCCCCccCc--cC----HHHHHHHHHhh
Confidence            9998753     1223333  45666555443322211000 0000000000011111111  23    67888888866


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc------CccccCCCcccccccCCC------cc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA------GFARTGSHFWGFEAHGVV------PD  318 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t------gfgr~G~~~~~~~~~~~~------pD  318 (480)
                      .++.+++++++++++++|..+++.++|++|+++|++||++||+||+|.      +.++++ .+++.+..++.      .|
T Consensus       179 ~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~d  257 (465)
T d1ax4a_         179 GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDP-KYKNATIKEVIFDMYKYAD  257 (465)
T ss_dssp             CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCG-GGTTCCHHHHHHHHGGGCS
T ss_pred             ccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccc-cccccchhhhccccccccc
Confidence            566789999999999999888899999999999999999999999987      234444 34443333332      46


Q ss_pred             eeeeccccccC-ccccccccCHH--HHHhhc----CCCccccCCCcHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 011669          319 IVTMAKGIGNG-IPLGAVVTTPE--IAEVLT----RRNYFNTFGGNPV-CTAAGHAVLKVIQKDKLQNNAHVVGSYLKER  390 (480)
Q Consensus       319 ivt~sK~~g~G-~pig~v~~~~~--~~~~l~----~~~~~~t~~~~~~-~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~  390 (480)
                      ++++||..++| ++.|+++.+++  +.....    ......++++... +.+++...+.....+++.++..+..+++++.
T Consensus       258 ~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~  337 (465)
T d1ax4a_         258 ALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDR  337 (465)
T ss_dssp             EEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeEeecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHH
Confidence            77888888854 55667776643  222221    1122344444333 3333333344334456677777778888888


Q ss_pred             HHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC---------------cCCCEEEE
Q 011669          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG---------------FYGNVFRI  455 (480)
Q Consensus       391 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------~~~~~iRi  455 (480)
                      |+++  ..+.+....+.+.++............... ......+.+.+.||.....+               ...+.+||
T Consensus       338 L~~~--g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRl  414 (465)
T d1ax4a_         338 LREA--GIPIQYPTGGHAVFVDCKKLVPQIPGDQFP-AQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRL  414 (465)
T ss_dssp             HHHT--TCCBCSSCCSSEEEEESTTTCTTSCGGGCH-HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEE
T ss_pred             HHhh--cCccccCCCcceeeeehhhhcCCCccccch-hHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEE
Confidence            8876  344444444444433322211111111111 22334556677888754321               11357999


Q ss_pred             e-CCCCCCHHHHHHHHHHHHHHHhh
Q 011669          456 T-PPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       456 ~-p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      + |+..+|++|||.++++|++++++
T Consensus       415 alP~~~~T~eeiD~vv~~l~~v~~~  439 (465)
T d1ax4a_         415 TIARRVYTNDHMDYIADALIGLKEK  439 (465)
T ss_dssp             ECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            7 55788999999999999987753

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.92  E-value=6.1e-24  Score=215.54  Aligned_cols=318  Identities=15%  Similarity=0.100  Sum_probs=189.5

Q ss_pred             hHHHHHHHHHHHhCC----CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC
Q 011669          141 HAIADFAEALASKMP----GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~----~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  216 (480)
                      +...++++.+.++++    .+.++|++|+|+++|++.+++....  +++.|++.+++|++.........           
T Consensus        88 ~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~--pGd~Vlv~~P~y~~~~~~~~~~~-----------  154 (431)
T d1m7ya_          88 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRT-----------  154 (431)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTT-----------
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcC--CCCEEEEeCCCchhHHHHHHHhc-----------
Confidence            344455555555432    3467999999999999999986543  67899999999976554432222           


Q ss_pred             CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc
Q 011669          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (480)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  296 (480)
                       |+..++++......|..|.+...+.+++....  ..++.++++...+|++|.+ .+++.+++|.++|++||+++|+||+
T Consensus       155 -g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~i~~~nP~NPtG~~-~s~~~l~~i~~~a~~~~~~vI~De~  230 (431)
T d1m7ya_         155 -GVEIVPIHCTSSNGFQITETALEEAYQEAEKR--NLRVKGVLVTNPSNPLGTT-MTRNELYLLLSFVEDKGIHLISDEI  230 (431)
T ss_dssp             -CCEEEEEECCGGGTSCCCHHHHHHHHHHHHHT--TCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred             -CceeccccccchhcccccHHHhhhhhhhhhhc--cCcceEEEecCcccccccc-ccccccccccccccccCcceeeccc
Confidence             34444443333334544533322223322221  2356666666667777766 4889999999999999999999999


Q ss_pred             ccCccccCCCcccccc----cC------C---Ccceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHH
Q 011669          297 QAGFARTGSHFWGFEA----HG------V---VPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA  362 (480)
Q Consensus       297 ~tgfgr~G~~~~~~~~----~~------~---~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~a  362 (480)
                      |..+.+.+..+..+..    ..      .   ..-+-+|||.++ +|+|+||++++++++....... ......++..+.
T Consensus       231 Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~-~~~~~~~~~~~~  309 (431)
T d1m7ya_         231 YSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-SSFGLVSSQTQH  309 (431)
T ss_dssp             TGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHH-GGGSCCCHHHHH
T ss_pred             ccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHH-hccccccccccc
Confidence            9988666532222110    00      0   111337999999 7999999999987654333221 122333444444


Q ss_pred             HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcC
Q 011669          363 AGHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMG  440 (480)
Q Consensus       363 aa~a~L~~i~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~G  440 (480)
                      +..+.+..... +++.++.+..-+..++.+.+..++.++.......|+++|+++.....  ........++++.|+ +.|
T Consensus       310 ~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~--~~~~~~~~~l~~~ll~~~g  387 (431)
T d1m7ya_         310 LLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYEVH  387 (431)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSS--SSSHHHHHHHHHHHHHTSC
T ss_pred             hhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccc--cCcccCHHHHHHHHHHHCC
Confidence            44444431111 22333333322233333333333434322223347888998853211  112233445666665 569


Q ss_pred             ceeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          441 VLVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       441 v~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |++.||..|    .+++||+.. ..+++++++++++|++++++
T Consensus       388 V~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         388 LNISPGSSCHCTEPGWFRVCFA-NLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             EECEEGGGGTCSSTTEEEEECS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHH
Confidence            999997543    478999943 35788999999999999875

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.6e-24  Score=213.78  Aligned_cols=339  Identities=11%  Similarity=0.080  Sum_probs=219.8

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc--cccccCChHHHHHHHHHHHhCCC--CCC-EEEEeCCHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYLNHAIADFAEALASKMPG--NLK-VVFFTNSGTEANEL  173 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~l~e~L~~~~~~--~~~-~v~f~~sGseA~~~  173 (480)
                      +..||+..|.+..   -.++.+.+++.+.+.+..+  ....+..+.+..+++.+.+.++.  ..+ +|++|+|+++|+.+
T Consensus        26 ~~~i~l~~G~Pd~---~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~  102 (382)
T d1u08a_          26 HQAINLSQGFPDF---DGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA  102 (382)
T ss_dssp             TTCEECCCSSCSS---CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred             CCCEEccCCCCCC---CCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHH
Confidence            3558888888764   2578899999998877532  11222234445555555554432  233 59999999999999


Q ss_pred             HHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 011669          174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG  253 (480)
Q Consensus       174 Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~  253 (480)
                      +++....  +++.|++.+++|+...........             .....+.. ...|..|    .+++++.+.    .
T Consensus       103 ~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~-~~~~~~d----~~~l~~~~~----~  158 (382)
T d1u08a_         103 AITALVR--NGDEVICFDPSYDSYAPAIALSGG-------------IVKRMALQ-PPHFRVD----WQEFAALLS----E  158 (382)
T ss_dssp             HHHHHCC--TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECC-TTTCCCC----HHHHHHHCC----T
T ss_pred             HHhhccc--ccceEEEecccccchhhhhhhccc-------------cceecccc-cccccCC----HHHHhhhhc----c
Confidence            9987654  678899999999876554433321             11111111 1122233    456666553    3


Q ss_pred             ceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccccc----ccCCCcceeeeccccc-c
Q 011669          254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE----AHGVVPDIVTMAKGIG-N  328 (480)
Q Consensus       254 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~----~~~~~pDivt~sK~~g-~  328 (480)
                      +++++++.+.+|++|.+ .+.+.+++|.++|+++++++|.||+|..+...+.......    ..+...-+.++||.++ .
T Consensus       159 ~~~~i~l~~P~NPtG~v-~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~p  237 (382)
T d1u08a_         159 RTRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMT  237 (382)
T ss_dssp             TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCG
T ss_pred             CccEEEECCCCcccccc-cccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCC
Confidence            66666666566777766 4888899999999999999999999986644431111111    1112223457899998 7


Q ss_pred             CccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccc
Q 011669          329 GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG  408 (480)
Q Consensus       329 G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g  408 (480)
                      |+|+||+++++++++.+.......+++.+.+.+.++.++++.  .+++.++.++..+..++.|.+.....++.......|
T Consensus       238 G~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg  315 (382)
T d1u08a_         238 GWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRA--EPEHYLALPDFYRQKRDILVNALNESRLEILPCEGT  315 (382)
T ss_dssp             GGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH--CTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBS
T ss_pred             cccchhhhccchhHHHHHhhhccccccccccccccccccccc--chHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCce
Confidence            999999999999988877665567788899999998888874  234444444444444444444433333333334456


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcC------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFY------GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~------~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      +++|+++.....      ....++++.| .+.||++.||..|      .+++||+  ++.+++++++++++|++
T Consensus       316 ~~~~~~~~~~~~------~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris--~~~~~e~l~~al~RL~~  381 (382)
T d1u08a_         316 YFLLVDYSAVST------LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC--FAKKESTLLAAAERLRQ  381 (382)
T ss_dssp             SEEEEECTTTCC------SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE--CCSCHHHHHHHHHHHTT
T ss_pred             EEEEEecCCCCC------CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEE--EeCCHHHHHHHHHHHhC
Confidence            778888742111      1134566655 5679999998544      2589999  56789999999999875

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.92  E-value=1.8e-23  Score=211.92  Aligned_cols=317  Identities=13%  Similarity=0.081  Sum_probs=188.4

Q ss_pred             hHHHHHHHHHHHhCC----CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccC
Q 011669          141 HAIADFAEALASKMP----GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ  216 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~----~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  216 (480)
                      +...++++.+.+.++    .+.++|++|+|+++|++.+++....  +++.|++.+++|.+.........           
T Consensus        87 ~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~--~Gd~Vlv~~P~y~~~~~~~~~~~-----------  153 (428)
T d1iaya_          87 EFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRT-----------  153 (428)
T ss_dssp             HHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTT-----------
T ss_pred             HHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCC--CCCEEEEccCCchHHHHHHHHhc-----------
Confidence            444555555555543    3457899999999999999986543  67899999999977654332111           


Q ss_pred             CCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEccc
Q 011669          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV  296 (480)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  296 (480)
                       |+..++++......|..|.+.....++.+.. . ..+++++++.+.+|++|.+ .+.+.+++|.++|++||+++|+||+
T Consensus       154 -g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~~~~l~nP~NPtG~~-~s~~~~~~i~~~a~~~~~~vI~De~  229 (428)
T d1iaya_         154 -GVQLIPIHCESSNNFKITSKAVKEAYENAQK-S-NIKVKGLILTNPSNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEI  229 (428)
T ss_dssp             -CCEEEEECCCTTTTTCCCHHHHHHHHHHHHH-T-TCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECT
T ss_pred             -CCeEEEeecccccccccccccccchhhhhhc-c-CCCceEEEEccCCCccccc-ccccccchhheeeccCcEEEEeccc
Confidence             4444555444444555553332222332222 2 3356666655556777766 4888899999999999999999999


Q ss_pred             ccCccccCCCccccc-c----------cCCCcceeeeccccc-cCccccccccC-HHHHHhhcCCCccccCCCcHHHHHH
Q 011669          297 QAGFARTGSHFWGFE-A----------HGVVPDIVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAA  363 (480)
Q Consensus       297 ~tgfgr~G~~~~~~~-~----------~~~~pDivt~sK~~g-~G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aa  363 (480)
                      |..+.+.+..+..+. .          .+...-+.+|||.++ +|+|+||+++. +++.+.+......  ...+...+.+
T Consensus       230 Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~  307 (428)
T d1iaya_         230 YAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYF  307 (428)
T ss_dssp             TGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHH
T ss_pred             ccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcc--cccccccccc
Confidence            998866653322211 0          011112347999998 79999999985 5566655432221  1233334443


Q ss_pred             HHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCc
Q 011669          364 GHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGV  441 (480)
Q Consensus       364 a~a~L~~i~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv  441 (480)
                      +.+.+..-. -+++.+..++..+..++.+.+..+..++.......|+|+|+++.....  ........++++.|+ +.||
T Consensus       308 ~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~--~~~~~~~~~l~~~Ll~~~gV  385 (428)
T d1iaya_         308 LAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLR--ESTFDSEMSLWRVIINDVKL  385 (428)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCS--SSSHHHHHHHHHHHHHTSCE
T ss_pred             hhhhhhhhccccccccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECccccc--cCCCCCHHHHHHHHHHhCCE
Confidence            333332100 012222222222222333333333334322234447888998853211  112223445666665 5699


Q ss_pred             eeeccCcC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          442 LVGKGGFY----GNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       442 ~v~~~~~~----~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ++.||..|    .+++||+.. ..+++++++++++|++++..
T Consensus       386 ~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         386 NVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             ECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             EEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHhh
Confidence            99997544    478999953 35778899999999999863

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.3e-23  Score=205.68  Aligned_cols=289  Identities=14%  Similarity=0.146  Sum_probs=189.9

Q ss_pred             cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCc-eEEEEcCCcccccccccccccCCCccccc
Q 011669          136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN-DIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       136 ~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      ..|+.+...+|+++|+++++.+.++|++|+|++||+..+++....  +++ .|++..++|..+...+....         
T Consensus        51 ~rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~--pgd~~Vl~~~P~y~~~~~~~~~~g---------  119 (354)
T d1fg7a_          51 NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE--PGKDAILYCPPTYGMYSVSAETIG---------  119 (354)
T ss_dssp             TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC--TTTCEEEECSSSCTHHHHHHHHHT---------
T ss_pred             hcCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhc--cccccccccccccccchhhhhccC---------
Confidence            356766667999999999988889999999999999999986543  444 57778899976665544332         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                          .....++.  ...|.-|    .++++..+     .+++++++.+.+|++|.+. +++.++.+.+.++ ++.++|+|
T Consensus       120 ----~~v~~~~~--~~~~~~d----~~~l~~~~-----~~~~~v~~~~pnNPtG~~~-~~~~~~~~~~~~~-~~~~~iid  182 (354)
T d1fg7a_         120 ----VECRTVPT--LDNWQLD----LQGISDKL-----DGVKVVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVAD  182 (354)
T ss_dssp             ----CEEEECCC--CTTSCCC----HHHHHTSC-----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEE
T ss_pred             ----ceeecccc--ccccccc----hhhhhhcc-----cccceeeccCCCccceeEe-eeccccccccccc-cccccccc
Confidence                22222222  1234334    34444332     3677888888888888775 6677777777665 57778888


Q ss_pred             ccccCccccCCCcccccccCCCcc---eeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPD---IVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV  370 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pD---ivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~  370 (480)
                      |.|..|.... ..  .......+.   +-||||.+| +|+|+||+++++++++.+....  ..++.+..++.++.+++..
T Consensus       183 d~~~~f~~~~-~~--~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~--~~~~~~~~~~~~a~~~~~~  257 (354)
T d1fg7a_         183 EAYIEFCPQA-SL--AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVI--APYPLSTPVADIAAQALSP  257 (354)
T ss_dssp             CTTGGGSGGG-CS--GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHS--CSSCSCHHHHHHHHHHTSH
T ss_pred             ccchhhcccc-cc--chhhcccccceEEeCCccccCCCccccccccccchhhhhhhhhc--CccchhhHHHHHHHHHHhh
Confidence            8877775433 11  111222233   338999999 8999999999999998876533  3455566666555555432


Q ss_pred             hhhhHHHHH---HHHHHHHHHHHHHHhHHhcCceee-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc
Q 011669          371 IQKDKLQNN---AHVVGSYLKERLTALKDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG  446 (480)
Q Consensus       371 i~~~~~~~~---~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  446 (480)
                      -..+....+   +.+..+++.+.+.    +.+.+.. ..+.|+|+|+++.+           ...+.+.|+++||+++++
T Consensus       258 ~~~~~~~~~~~~~~~~r~~l~~~l~----~~~~~~~~~p~~~~f~~~~~~~-----------~~~~~~~L~~~gIlvr~~  322 (354)
T d1fg7a_         258 QGIVAMRERVAQIIAEREYLIAALK----EIPCVEQVFDSETNYILARFKA-----------SSAVFKSLWDQGIILRDQ  322 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----HSTTEEEECCCSSSEEEEEETT-----------HHHHHHHHHHTTEECEEC
T ss_pred             hccccccccchhhhhHHHHHHHHHH----hCCCcceeCCCCceEEEEeCCC-----------HHHHHHHHHHCCcEEecC
Confidence            112222222   3333333333333    3454433 45567888888731           356888999999999887


Q ss_pred             CcC---CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          447 GFY---GNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       447 ~~~---~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      +.+   .+++||+.   .|++|++.++++|+.
T Consensus       323 ~~~~~~~~~lRisi---gt~ee~~~~l~aLka  351 (354)
T d1fg7a_         323 NKQPSLSGCLRITV---GTREESQRVIDALRA  351 (354)
T ss_dssp             TTSTTCTTEEEEEC---CCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCEEEEEe---CCHHHHHHHHHHHhh
Confidence            543   47999993   488999999998873

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.5e-22  Score=198.17  Aligned_cols=315  Identities=14%  Similarity=0.086  Sum_probs=200.6

Q ss_pred             eCCCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC---CCCCEEEEeCCHHHHH
Q 011669           95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEAN  171 (480)
Q Consensus        95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~---~~~~~v~f~~sGseA~  171 (480)
                      +..++..+++..|-.  .++ .++.+++++.+++....  ...|+.....+|++++++++.   ...++|++|+|+++++
T Consensus        15 ~~~~~d~~~l~~~en--p~~-~p~~i~~~~~~~~~~~~--~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l   89 (334)
T d2f8ja1          15 ETEKRDKTYLALNEN--PFP-FPEDLVDEVFRRLNSDA--LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEII   89 (334)
T ss_dssp             CCCCCCSEECSSCCC--SSC-CCHHHHHHHHHHCCTTG--GGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHH
T ss_pred             cccCCCceEEECCCC--CCC-CCHHHHHHHHHHhhcch--hcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHH
Confidence            446777888776643  344 46899999988876532  234555566778888888753   3467899999999999


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      .++++.      .++|++++++|.++........             ...+.+|......+  +            +.. 
T Consensus        90 ~~l~~~------~d~v~i~~P~y~~~~~~~~~~g-------------~~~v~v~~~~~~~~--~------------~~~-  135 (334)
T d2f8ja1          90 YVMMLM------FDRSVFFPPTYSCYRIFAKAVG-------------AKFLEVPLTKDLRI--P------------EVN-  135 (334)
T ss_dssp             HHHHHH------SSEEEECSSCCHHHHHHHHHHT-------------CCEEECCCCTTSCC--C------------CCC-
T ss_pred             HHHhhh------ccccccccccccccccchhccC-------------Cccccccccccccc--c------------ccc-
Confidence            876652      3789999999988765554432             22333332111111  0            001 


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccc-cCc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGI  330 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g-~G~  330 (480)
                      .++++++++...+|++|.+..    .++|.++ .++++++|+||++.++.... ........+...-+.+|||.++ .|+
T Consensus       136 ~~~~~~l~l~nP~NPtG~~~s----~~~l~~~-~~~~~~ii~Dd~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~~~G~  209 (334)
T d2f8ja1         136 VGEGDVVFIPNPNNPTGHVFE----REEIERI-LKTGAFVALDEAYYEFHGES-YVDFLKKYENLAVIRTFSKAFSLAAQ  209 (334)
T ss_dssp             CCTTEEEEEESSCTTTCCCCC----HHHHHHH-HTTTCEEEEECTTGGGTCCC-CGGGGGTCSSEEEEEESTTTSSCTTT
T ss_pred             cccceEEEecccccccceeec----HHHhhcc-ccceeEEeecccchhhcccc-cccccccCceEEEEecCccccchhhh
Confidence            124444544444667777654    4555554 56799999999997664332 2211222222222447999999 799


Q ss_pred             cccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecccee
Q 011669          331 PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (480)
Q Consensus       331 pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~  410 (480)
                      |+||+++++++++.+....  .+++.+..++.++.+.++.   .++.+...+.....++.|.+..++++ +....+.|.|
T Consensus       210 R~G~~~~~~~~i~~l~~~~--~~~~~s~~~~~~a~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~g~f  283 (334)
T d2f8ja1         210 RVGYVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDH---REIFEERTKFIVEERERMKSALREMG-YRITDSRGNF  283 (334)
T ss_dssp             CEEEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHHHHHHT-CEECCCCSSE
T ss_pred             hhhhcccchHHHHHHHHhh--cccccchhhhhhccccccc---ccchhhHHHHHHHHHHHHHHHHHHCC-CeECCCCceE
Confidence            9999999999998886543  3456677888887777753   23332222222233333444444444 2334667878


Q ss_pred             EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                      +|+.+..         .....+.+.|+++||++++.   .+++||+.   .+.+|+++++++|++
T Consensus       284 ~~~~~~~---------~~~~~~~~~L~~~GI~vr~~---~~~vRis~---g~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         284 VFVFMEK---------EEKERLLEHLRTKNVAVRSF---REGVRITI---GKREENDMILRELEV  333 (334)
T ss_dssp             EEEECCH---------HHHHHHHHHHHHTTEECEEE---TTEEEEEC---CCHHHHHHHHHHHHH
T ss_pred             EEEECCC---------CCHHHHHHHHHHCCCEECCC---CCeEEEEc---CCHHHHHHHHHHHhc
Confidence            8876522         24677899999999999754   58999994   478899999998875

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.90  E-value=1.1e-21  Score=195.40  Aligned_cols=336  Identities=12%  Similarity=0.064  Sum_probs=216.4

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc------cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST------VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~------~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA  170 (480)
                      +.+.|||..+      .|..+..|++|+.+.+.......      .....+...++++.|+++++.+.++|+|++|||||
T Consensus         6 ~~~~yld~~~------~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a   79 (381)
T d1elua_           6 ANKTYFNFGG------QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG   79 (381)
T ss_dssp             TTSEECCTTT------CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred             CCCEEeeCCc------ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHH
Confidence            4567888543      35677789999998876532111      11223445678889999998878889999999999


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      ++.++...+. .+++.|++.+..|++.......+..         ..|+.....|....... .+   ..+.+++.+   
T Consensus        80 ~~~~~~~l~~-~~g~~i~~~~~~~~s~~~~~~~~~~---------~~g~~~~~v~~~~~~~~-~~---~~~~l~~~i---  142 (381)
T d1elua_          80 CDIVLWGLDW-HQGDEILLTDCEHPGIIAIVQAIAA---------RFGITYRFFPVAATLNQ-GD---AAAVLANHL---  142 (381)
T ss_dssp             HHHHHHHSCC-CTTCEEEEETTCCHHHHHHHHHHHH---------HHCCEEEEECCGGGSSS-SC---HHHHHHTTC---
T ss_pred             hhhcchhhhh-cCCceEEEeccccceeeeccccccc---------ccccccccccccccccc-ch---HHHHHHhhh---
Confidence            9999876532 3667888888887654332222111         01333333332211111 11   122333332   


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh----CCEEEEcccccCccccCCCcccccccCCCcceeeec--c
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA----GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--K  324 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~----gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K  324 (480)
                       ..+++++++..+++++|.+.+    +++|.++|++|    ++++++|++|+ +|..   .  ++.....+|++++|  |
T Consensus       143 -~~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~---~--~~~~~~~~D~~~~s~~K  211 (381)
T d1elua_         143 -GPKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL---P--LDFSRLEVDYYAFTGHK  211 (381)
T ss_dssp             -CTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB---C--CCTTTSCCSEEEEESSS
T ss_pred             -cccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-cccc---c--ccccccccccccccccc
Confidence             458999999999999999988    99999999985    69999999986 5432   1  23334457777655  9


Q ss_pred             ccccCccccccccCHHHHHhhcCCCcc----------------------ccCCCcHHHHHHHHHHHHHhhhh----HHHH
Q 011669          325 GIGNGIPLGAVVTTPEIAEVLTRRNYF----------------------NTFGGNPVCTAAGHAVLKVIQKD----KLQN  378 (480)
Q Consensus       325 ~~g~G~pig~v~~~~~~~~~l~~~~~~----------------------~t~~~~~~~~aaa~a~L~~i~~~----~~~~  378 (480)
                      .++++.++|++.++++..+.+.+...+                      .....+.....+..++++.+.+.    ...+
T Consensus       212 ~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~  291 (381)
T d1elua_         212 WFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQ  291 (381)
T ss_dssp             TTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             cccccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchh
Confidence            998877889999998887766532110                      01123444555566666665442    3346


Q ss_pred             HHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCC
Q 011669          379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPP  458 (480)
Q Consensus       379 ~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~  458 (480)
                      +..++.+++.++|+++.. ...+.....++.++.+.+....        ..+.+.+.|.++||.+...+ ..+++||++.
T Consensus       292 ~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~vsf~~~~~~--------~~~~i~~~L~~~gi~v~~~~-~~~~lRis~~  361 (381)
T d1elua_         292 AICQRSEFLWRGLNQLPH-VHCLATSAPQAGLVSFTVDSPL--------GHRAIVQKLEEQRIYLRTIA-DPDCIRACCH  361 (381)
T ss_dssp             HHHHHHHHHHHHHHHSTT-EEESCSSCCSSSEEEEEECSSS--------CHHHHHHHHHHTTEECEEET-TTTEEEEECC
T ss_pred             hhhhHHHHHHHHHhcCCC-eEecCCCCccccEEEEEcCCCC--------CHHHHHHHHHhCCcEEEecC-CCCEEEEecC
Confidence            666777777777777521 1112222334556666553211        14567889999999987543 2578999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 011669          459 LCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       459 ~~~t~~~id~~l~~l~~~  476 (480)
                      ..+|++|||+++++|++.
T Consensus       362 ~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         362 YITDEEEINHLLARLADF  379 (381)
T ss_dssp             TTCCHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999999763

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=8e-23  Score=209.37  Aligned_cols=358  Identities=12%  Similarity=0.105  Sum_probs=214.9

Q ss_pred             CCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHH
Q 011669           98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM  177 (480)
Q Consensus        98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~  177 (480)
                      ++.+||+.+..++....   +....+    +... + ....-++...+|+++++++++  .+.++|++||++||+.|+++
T Consensus        40 ~~~~idl~sd~~t~~~~---~~~~a~----~~~g-d-~~Y~~~~~~~~le~~~a~l~G--~~~~~~~~sGt~A~~~a~~~  108 (467)
T d2v1pa1          40 EDVFIDLLTDSGTGAVT---QSMQAA----MMRG-D-EAFSGSRSYYALAESVKNIFG--YQYTIPTHQGRGAEQIYIPV  108 (467)
T ss_dssp             GGCSEECSCCTTCSCCC---HHHHHH----TTSC-C-CCSSSCHHHHHHHHHHHHHTC--CSEEEEECSSTTTHHHHHHH
T ss_pred             cceeeeccccccchhhH---HHHHhh----cccc-c-hhhcCCchHHHHHHHHHHHHC--CCEEEECCCCHHHHHHHHHH
Confidence            44579998877665322   222222    2111 1 112237888999999999995  57899999999999999998


Q ss_pred             HHhh------cCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          178 ARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       178 ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ++..      .++...+...+.||+.+.+....++.......... + ........+  ....|    .+++++.++...
T Consensus       109 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~-~-~~~~~~~~~--~~~~d----~~~l~~~i~~~~  180 (467)
T d2v1pa1         109 LIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKE-A-FDTGVRYDF--KGNFD----LEGLERGIEEVG  180 (467)
T ss_dssp             HHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTT-T-TCTTSCCTT--TTCBC----HHHHHHHHHHHC
T ss_pred             HhhccceEecCCCCcEEEEecccccccHHHHHHcCCeeeeccccc-c-ccccccccc--ccCCC----HHHHHHHHhhcC
Confidence            8764      23456777889999988888777763211110000 0 000000111  11123    678888888665


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCc---cccCCCccccccc---------CCCcce
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF---ARTGSHFWGFEAH---------GVVPDI  319 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgf---gr~G~~~~~~~~~---------~~~pDi  319 (480)
                      ++.++++++|++++.+|..+++.+++++|+++|++||++||+|+++..-   +..+ ..+++...         ....|+
T Consensus       181 ~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~d~  259 (467)
T d2v1pa1         181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQ-REAEYKDWTIEQITRETYKYADM  259 (467)
T ss_dssp             GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHH-HCGGGTTSCHHHHHHHHGGGCSE
T ss_pred             ccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhcccccccc-ccccccCCcccccchhhcccCCE
Confidence            6678999999999998888889999999999999999999999998521   1111 11112111         224688


Q ss_pred             eeeccccccCccccccc-cCHH-HHHhhc-------CCCccccCCCcHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011669          320 VTMAKGIGNGIPLGAVV-TTPE-IAEVLT-------RRNYFNTFGGNPVC-TAAGHAVLKVIQKDKLQNNAHVVGSYLKE  389 (480)
Q Consensus       320 vt~sK~~g~G~pig~v~-~~~~-~~~~l~-------~~~~~~t~~~~~~~-~aaa~a~L~~i~~~~~~~~~~~~~~~l~~  389 (480)
                      +++++..+.+.+.|+++ .+++ +.....       ...++.++++.... +++....+.....+++.++..++.+++++
T Consensus       260 ~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~  339 (467)
T d2v1pa1         260 LAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVD  339 (467)
T ss_dssp             EEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHH
Confidence            88887666544555444 4433 322221       11233444444444 44444445555556788888889999999


Q ss_pred             HHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC---------------cCCCEEE
Q 011669          390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG---------------FYGNVFR  454 (480)
Q Consensus       390 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------~~~~~iR  454 (480)
                      +|.+..   ..+....+.+.++.....-........ .......+.+.+.||.....+               ...+.+|
T Consensus       340 ~L~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vR  415 (467)
T d2v1pa1         340 GLEEIG---VVCQQAGGHAAFVDAGKLLPHIPADQF-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLR  415 (467)
T ss_dssp             HHHHTT---CCEEEECSSCEEEEHHHHSTTSCGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEE
T ss_pred             HHHhcC---CcccCCCccceeecchhhcCCcchhhh-hhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEE
Confidence            988752   122222222222211111111111011 112334455667787543211               1235799


Q ss_pred             EeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669          455 ITPP-LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       455 i~p~-~~~t~~~id~~l~~l~~~l~~  479 (480)
                      |++| ..+|++|||.++++|++++++
T Consensus       416 laip~~~~T~eeiD~vv~~l~~v~~~  441 (467)
T d2v1pa1         416 LTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             ECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHHHH
Confidence            9866 577999999999999998763

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3.8e-20  Score=185.72  Aligned_cols=334  Identities=14%  Similarity=0.087  Sum_probs=215.1

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-------ChHHHHHHHHHHHhCCC-CCCEEEEeCCHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-------NHAIADFAEALASKMPG-NLKVVFFTNSGTEAN  171 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-------~~~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~  171 (480)
                      .|||..++      |-.++.|.+++.+.+.+.........       ...+++.++.+++.++. ..+.++|++++||++
T Consensus        24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~   97 (405)
T d1jf9a_          24 AYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI   97 (405)
T ss_dssp             EECCTTTC------CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred             EEEeCccc------cCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHH
Confidence            48886543      34678999999988876421111111       23466788999999974 346899999999999


Q ss_pred             HHHHHHHH--hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          172 ELAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       172 ~~Alk~ar--~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      ..+++...  ...+++.|++.+..||........+....         |+.....|....+..  |    +++++.+++ 
T Consensus        98 ~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~---------g~~v~~~~~~~~g~~--~----~~~~~~~i~-  161 (405)
T d1jf9a_          98 NLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV---------GAELRVIPLNPDGTL--Q----LETLPTLFD-  161 (405)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH---------TCEEEEECBCTTSCB--C----GGGHHHHCC-
T ss_pred             HHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHc---------CcEEEEECCCCCCcC--C----HHHHHHhcc-
Confidence            98887532  33467889998888887665554432211         222222221111111  2    345665553 


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g  327 (480)
                         +++++|.++.+++.+|.+.|    +++|.++|+++|+++++|-+|+ .|..     .++.....+|++++|  |.+|
T Consensus       162 ---~~t~lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~~-----~id~~~~~~D~~~~s~hK~~G  228 (405)
T d1jf9a_         162 ---EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH-----PVDVQALDCDFYVFSGHKLYG  228 (405)
T ss_dssp             ---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS-----CCCHHHHTCSEEEEEGGGTTS
T ss_pred             ---CCcEEEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee-cccc-----ccchhhcCCceeecccccccc
Confidence               58999999999999999998    9999999999999999999997 4322     123233457888766  9864


Q ss_pred             cCccccccccCHHHHHhhcCCCccc----------------------cCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRNYFN----------------------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS  385 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~~~~----------------------t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~  385 (480)
                       +-.+|+++.+++.++.+.+.....                      .-..|..+.++..++++.+.+.+ .+++.+...
T Consensus       229 -p~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~  306 (405)
T d1jf9a_         229 -PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALG-LNNIAEYEQ  306 (405)
T ss_dssp             -CSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHH
T ss_pred             -CCCceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHH
Confidence             455799999999877654321100                      11235666777777888765432 233333333


Q ss_pred             HHHHHHHHhHHhcCcee--eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc----------CCCEE
Q 011669          386 YLKERLTALKDKYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF----------YGNVF  453 (480)
Q Consensus       386 ~l~~~L~~l~~~~~~~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~~~i  453 (480)
                      .+.+.+.+.....+.+.  ....++..+.+.+...         ....+...|.++||.++.|..          ..+.+
T Consensus       307 ~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~---------~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~i  377 (405)
T d1jf9a_         307 NLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH---------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMC  377 (405)
T ss_dssp             HHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTC---------CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEE
T ss_pred             HHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCC---------CHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEE
Confidence            44444444433444332  2223344555555221         134577788899999875421          13679


Q ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          454 RITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       454 Ri~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||++++.+|++|||.++++|+++++-
T Consensus       378 RiS~~~ynt~eDid~l~~~l~~i~r~  403 (405)
T d1jf9a_         378 RASLAMYNTHEEVDRLVTGLQRIHRL  403 (405)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998763

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.86  E-value=2.5e-21  Score=194.84  Aligned_cols=338  Identities=12%  Similarity=0.048  Sum_probs=191.6

Q ss_pred             EeccCCcccccCCCC--CHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCC--------CCCCEEEEeCCHHHH
Q 011669          102 LDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP--------GNLKVVFFTNSGTEA  170 (480)
Q Consensus       102 lD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~--------~~~~~v~f~~sGseA  170 (480)
                      ||+..|.....-|..  .|.|.+|.+........ ...| +.....+|++.+++++.        .+...+..+.+|..+
T Consensus        32 InL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~-~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (412)
T d1yaaa_          32 VDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSY-NHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGA  110 (412)
T ss_dssp             EECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTC-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred             EEeecCCCcCCCCCCCCcHHHHHHHHHHHhCccc-CCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhH
Confidence            566555332223332  36777775443322111 1123 24456677777766541        111223334556666


Q ss_pred             HHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       171 ~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      ...++.+.....+++.|++.+++|..+.........             ....+|......+..+    .+.+++.+...
T Consensus       111 ~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~-------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~  173 (412)
T d1yaaa_         111 LHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL-------------KTATYPYWANETKSLD----LNGFLNAIQKA  173 (412)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTC-------------CEEEEECEETTTTEEC----HHHHHHHHHHS
T ss_pred             HHHHHHHHhccCCCCEEecccccCchhHHHHHHcCC-------------ceeccccccccccccc----chhhhcccccC
Confidence            666665444445789999999999877666544432             2222222112222223    34455555443


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc------cccCCCcc---eee
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF------EAHGVVPD---IVT  321 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~------~~~~~~pD---ivt  321 (480)
                       ++.+.++++.+.+|++|.+ ++++.+++|.++|++|++++|+||+|.+|.+.+....+.      ...+..+.   +.+
T Consensus       174 -~~~~~~i~i~~P~NPTG~~-~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  251 (412)
T d1yaaa_         174 -PEGSIFVLHSCAHNPTGLD-PTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQS  251 (412)
T ss_dssp             -CTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEE
T ss_pred             -CCceEEEEecCCCCCcccc-CCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEe
Confidence             3456777777778888876 589999999999999999999999999997665211110      11122222   337


Q ss_pred             eccccc-cCccccccccCHHHHHhhcC-----------CCccccCCCcHHHHHHHHHHHHHhh-hhHH-------HHHHH
Q 011669          322 MAKGIG-NGIPLGAVVTTPEIAEVLTR-----------RNYFNTFGGNPVCTAAGHAVLKVIQ-KDKL-------QNNAH  381 (480)
Q Consensus       322 ~sK~~g-~G~pig~v~~~~~~~~~l~~-----------~~~~~t~~~~~~~~aaa~a~L~~i~-~~~~-------~~~~~  381 (480)
                      +||.++ .|+|+||+++++++.+.+..           .......+.+.+++.++...++.-. .+.+       .++++
T Consensus       252 ~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  331 (412)
T d1yaaa_         252 FAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRIT  331 (412)
T ss_dssp             CTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            899999 69999999988654322111           1123445667777777776665211 1122       23333


Q ss_pred             HHHHHHHHHHHHhHHhcCceeeE-eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCC
Q 011669          382 VVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLC  460 (480)
Q Consensus       382 ~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~  460 (480)
                      ++++.+.+.|+++... ..+..+ ...|+|.|+.+.            .+.+.+.+.+.||++.+++      ||+.+ .
T Consensus       332 ~~r~~l~~~L~~~g~~-~~~~~~~~~gG~F~~~~ls------------~e~~~~L~~e~~V~~~~g~------Ris~~-g  391 (412)
T d1yaaa_         332 KMRHALRDHLVKLGTP-GNWDHIVNQCGMFSFTGLT------------PQMVKRLEETHAVYLVASG------RASIA-G  391 (412)
T ss_dssp             HHHHHHHHHHHHHTCS-SCCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECCTTS------EEEGG-G
T ss_pred             HHHHHHHHHHHHhCCC-CCCceeCCCceEEEecCcC------------HHHHHHHHHhCCEEECCCC------EEEec-c
Confidence            3334444444333110 012222 334666665431            1223334467899988753      88843 3


Q ss_pred             CCHHHHHHHHHHHHHHHhh
Q 011669          461 FTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       461 ~t~~~id~~l~~l~~~l~~  479 (480)
                      .+++.|+.+.++|+++++.
T Consensus       392 ~~~~~i~~l~~ai~~v~k~  410 (412)
T d1yaaa_         392 LNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             CCTTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            6788999999999998874

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.86  E-value=2.3e-21  Score=194.50  Aligned_cols=323  Identities=14%  Similarity=0.022  Sum_probs=183.6

Q ss_pred             CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCC------CCCEEEEeC--CHHHHHHHHHHHHHhh-cCCceE
Q 011669          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG------NLKVVFFTN--SGTEANELAIMMARLY-TGCNDI  187 (480)
Q Consensus       117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~------~~~~v~f~~--sGseA~~~Alk~ar~~-~~~~~i  187 (480)
                      .|.|.+|..+.+.+... ....+.....+|++.+++++-.      ..+.++.+.  +|+.+..+...+++.. .+++.|
T Consensus        48 ~~~V~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~V  126 (401)
T d7aata_          48 LNCVRKAEAMIAAKKMD-KEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDV  126 (401)
T ss_dssp             CHHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred             CHHHHHHHHHHhhCCCC-CCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceE
Confidence            47888888776665321 1111234455666666655311      234444433  3444444433333332 368899


Q ss_pred             EEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCC
Q 011669          188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG  267 (480)
Q Consensus       188 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~  267 (480)
                      ++.+++|+++........             ...+.+|......|..+    .+.+.+.+... .++++++++.+.+|++
T Consensus       127 lv~~P~y~~y~~~~~~~g-------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~iii~~p~NPT  188 (401)
T d7aata_         127 YLPKPSWGNHTPIFRDAG-------------LQLQAYRYYDPKTCSLD----FTGAMEDISKI-PEKSIILLHACAHNPT  188 (401)
T ss_dssp             EEEESCCTTHHHHHHHTT-------------CEEEEEECEETTTTEEC----HHHHHHHHTTS-CTTCEEEEESSSCTTT
T ss_pred             EEecCCCcchhhHHHHcC-------------CeEEEEecccccccccc----HHHHHHHHhcC-CCceEEEEecCCCCCc
Confidence            999999988766655442             22333322222222223    44555555433 3467788888888888


Q ss_pred             cceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCccc---cccc---CCCcceeeeccccc-cCccccccccCHH
Q 011669          268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG---FEAH---GVVPDIVTMAKGIG-NGIPLGAVVTTPE  340 (480)
Q Consensus       268 G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~---~~~~---~~~pDivt~sK~~g-~G~pig~v~~~~~  340 (480)
                      |.+ .+.+.+++|.++|++|++++|+||+|.+|.+.+.....   ....   .....+.++||.++ .|+|+||++++.+
T Consensus       189 G~~-~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~  267 (401)
T d7aata_         189 GVD-PRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICR  267 (401)
T ss_dssp             CCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             ccc-CCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecchH
Confidence            877 48999999999999999999999999999765511101   1111   11223347899999 6999999999877


Q ss_pred             HHHhhcCC-------CccccCCCcHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHH---HHHHHHhHHhcCc---ee-eEe
Q 011669          341 IAEVLTRR-------NYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYL---KERLTALKDKYGI---IG-DVR  405 (480)
Q Consensus       341 ~~~~l~~~-------~~~~t~~~~~~~~aaa~a~L~~i~-~~~~~~~~~~~~~~l---~~~L~~l~~~~~~---~~-~v~  405 (480)
                      +.+.+...       ......+.+.+.++++...++.-. ...+.+..+++.+++   ++.|.+..++++.   +. ...
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~  347 (401)
T d7aata_         268 DAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITD  347 (401)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECC
Confidence            65543321       111233445555555555443110 011222222222222   2222222222321   11 234


Q ss_pred             ccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       406 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ..|+|+|+.+.            .+.+.+.+.++||.+.+|      +||+.. ..++++|+.+.++|+++++
T Consensus       348 ~~G~F~~~~ls------------~e~~~~L~~e~gV~~~pg------~Ris~a-~~~~~~i~~la~ai~~v~k  401 (401)
T d7aata_         348 QIGMFCFTGLK------------PEQVERLTKEFSIYMTKD------GRISVA-GVASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             CCSSEEECCCC------------HHHHHHHHHHHCEECCTT------CEEEGG-GCCTTTHHHHHHHHHHHHC
T ss_pred             CCeEEEecCCC------------HHHHHHHHHhCCEEECCC------cEEEec-cCCHHHHHHHHHHHHHHhC
Confidence            45777776541            122333446789999886      399843 3688899999999999874

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.85  E-value=4.5e-19  Score=177.95  Aligned_cols=331  Identities=14%  Similarity=0.094  Sum_probs=214.7

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccC-------ChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-------NHAIADFAEALASKMPGN-LKVVFFTNSGTEAN  171 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-------~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~  171 (480)
                      .|||-.++      |-.++.|.+++.+.+.+.........       ...+++.++.++++++.+ .+.++|++++++++
T Consensus        24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~   97 (408)
T d1t3ia_          24 VYLDNAAT------SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI   97 (408)
T ss_dssp             EECBTTTC------CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred             EEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHH
Confidence            58886554      34578999999998876421111111       245567889999999875 47799999999999


Q ss_pred             HHHHHHH--HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 011669          172 ELAIMMA--RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF  249 (480)
Q Consensus       172 ~~Alk~a--r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~  249 (480)
                      ..++...  ....+++.|++.+..|++...........         .|+.....|....+.  .+    .+.++++++ 
T Consensus        98 n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~---------~g~~v~~~~~~~~~~--~~----~~~l~~~~~-  161 (408)
T d1t3ia_          98 NLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAK---------TGAVLKFVQLDEQES--FD----LEHFKTLLS-  161 (408)
T ss_dssp             HHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHH---------HCCEEEEECBCTTSS--BC----HHHHHHHCC-
T ss_pred             HHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhc---------cCceEeeeecccccc--cc----HHHhhhccC-
Confidence            9888753  23346678888777776554443322111         122222222111111  12    456666653 


Q ss_pred             cCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccc
Q 011669          250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG  327 (480)
Q Consensus       250 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g  327 (480)
                         ++++.|.+..+++.+|.+++    +++|.++|+++|+++|+|-+|+ +|...     ++.....+|++++|  |.+ 
T Consensus       162 ---~~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~~-----id~~~~~~D~~~~s~hK~~-  227 (408)
T d1t3ia_         162 ---EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP-----LDVQLIDCDWLVASGHKMC-  227 (408)
T ss_dssp             ---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC-----CCHHHHTCSEEEEEGGGTT-
T ss_pred             ---CCceEEEEecccccccccCc----HHHHhhhhhccCceeeecccee-ccccc-----ccccccCCceEEecccccc-
Confidence               48999999999999999998    9999999999999999999997 54321     33334457888776  864 


Q ss_pred             cCccccccccCHHHHHhhcCCCccc---------------------cCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHH
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRNYFN---------------------TFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVV  383 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~~~~---------------------t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~  383 (480)
                      |+..+|+++.+++......+...+.                     +...|..+.++..++++.+.+   +++.++...+
T Consensus       228 gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l  307 (408)
T d1t3ia_         228 APTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL  307 (408)
T ss_dssp             SCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            4556899999999877654321110                     112355556666677777654   4455555666


Q ss_pred             HHHHHHHHHHhHHhcCceeeE------eccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---------
Q 011669          384 GSYLKERLTALKDKYGIIGDV------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---------  448 (480)
Q Consensus       384 ~~~l~~~L~~l~~~~~~~~~v------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------  448 (480)
                      .+++.+.+.++    +.+...      ...+.++.+.+...         ....+.+.|.++||.+..|..         
T Consensus       308 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~iv~f~~~~~---------~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~  374 (408)
T d1t3ia_         308 THYLWQGLGQI----PQLRLYGPNPKHGDRAALASFNVAGL---------HASDVATMVDQDGIAIRSGHHCTQPLHRLF  374 (408)
T ss_dssp             HHHHHHHHHTC----TTEEEESCCGGGSCBCSEEEEEETTB---------CHHHHHHHHHTTTEECBCSCTTCHHHHHHT
T ss_pred             HhHHhhhhccC----ccccccCCCccccCcceEEEEEeCCC---------CHHHHHHHHhhCCcEEecCcccccHHHHhh
Confidence            66665555443    322111      11233445544211         145677888899999875421         


Q ss_pred             -CCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          449 -YGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       449 -~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       ..+.+||++....|++|||.++++|+++++.
T Consensus       375 ~~~g~vRiS~~~ynt~~did~li~~L~~~~~~  406 (408)
T d1t3ia_         375 DASGSARASLYFYNTKEEIDLFLQSLQATIRF  406 (408)
T ss_dssp             TCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence             1357999999999999999999999999874

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.85  E-value=1.4e-20  Score=189.44  Aligned_cols=327  Identities=11%  Similarity=0.035  Sum_probs=187.7

Q ss_pred             CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCC--------CCCCEEEEeCCHHHHHHHHHHHHHh-----hcC
Q 011669          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--------GNLKVVFFTNSGTEANELAIMMARL-----YTG  183 (480)
Q Consensus       117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~--------~~~~~v~f~~sGseA~~~Alk~ar~-----~~~  183 (480)
                      .|.|.+|.+..+..........+.....+|++++++++-        .+...+..+.+++.++..+......     ..+
T Consensus        50 ~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p  129 (412)
T d1ajsa_          50 LPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNK  129 (412)
T ss_dssp             CHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCC
T ss_pred             cHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCC
Confidence            477888765544332111112234556677777776641        1122456778888888888765432     246


Q ss_pred             CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEccc
Q 011669          184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI  263 (480)
Q Consensus       184 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi  263 (480)
                      ++.|++.+++|.++........+..          +...+.++.  ..+..|    .+.+++.+... .+++.++++.+.
T Consensus       130 Gd~Vlv~~P~y~~y~~~~~~~G~~~----------v~~~~~~~~--~~~~~d----~~~~~~~~~~~-~~~~~~il~~~P  192 (412)
T d1ajsa_         130 DTPVYVSSPTWENHNGVFTTAGFKD----------IRSYRYWDT--EKRGLD----LQGFLSDLENA-PEFSIFVLHACA  192 (412)
T ss_dssp             CSCEEEEESCCTHHHHHHHHTTCSC----------EEEEECEET--TTTEEC----HHHHHHHHHHS-CTTCEEEEESSS
T ss_pred             CCEEEEeCCcchhhHHHHHHcCCeE----------EEeeccccc--cccccc----HHHHHHHHHhc-cCCcEEEEecCC
Confidence            8899999999977666555443221          111111111  111123    34444444433 346677777777


Q ss_pred             CCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCC--cccc-c---ccCCCcceeeeccccc-cCccccccc
Q 011669          264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH--FWGF-E---AHGVVPDIVTMAKGIG-NGIPLGAVV  336 (480)
Q Consensus       264 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~--~~~~-~---~~~~~pDivt~sK~~g-~G~pig~v~  336 (480)
                      +|++|.+ ++++.+++|.++|++||+++|+||+|.++.+.+..  .+.. .   ......-+.++||.++ .|+|+||++
T Consensus       193 ~NPTG~v-~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~  271 (412)
T d1ajsa_         193 HNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLT  271 (412)
T ss_dssp             CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred             CCCcCCC-CCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccc
Confidence            8888876 59999999999999999999999999998765511  1111 1   1112223347899999 699999999


Q ss_pred             cCHHHHHhhcC-------CCccccCCCcHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH---HHHHHhHHhcCce---e
Q 011669          337 TTPEIAEVLTR-------RNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLK---ERLTALKDKYGII---G  402 (480)
Q Consensus       337 ~~~~~~~~l~~-------~~~~~t~~~~~~~~aaa~a~L~~i~-~~~~~~~~~~~~~~l~---~~L~~l~~~~~~~---~  402 (480)
                      ++.+..+.+..       .......+.+.++++++.+.+..-. .+.+.+++..+.++++   +.|.+..+.++..   .
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~  351 (412)
T d1ajsa_         272 VVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWN  351 (412)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred             cchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCee
Confidence            87654433321       1112233445666666655543211 1122223333322222   2222222233221   1


Q ss_pred             e-EeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          403 D-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       403 ~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      . ....|+|.|+.+.            .+.+.+.+.++||++.||+      ||++. ..++++|+.++++|+++++++
T Consensus       352 ~i~~~~G~F~~~~ls------------~~~v~~L~~e~gV~~vpg~------Ri~~a-g~~~~~i~~~a~aI~~av~~~  411 (412)
T d1ajsa_         352 HITDQIGMFSFTGLN------------PKQVEYLINQKHIYLLPSG------RINMC-GLTTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             HHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTTS------EEEGG-GCCTTTHHHHHHHHHHHHHHC
T ss_pred             eecCCCeEEEecCCC------------HHHHHHHHHhCCEEEeCCC------eEEec-cCCHHHHHHHHHHHHHHHHhc
Confidence            1 2345666654331            1334445567899998864      88843 367899999999999999875

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.5e-20  Score=187.71  Aligned_cols=332  Identities=15%  Similarity=0.168  Sum_probs=194.7

Q ss_pred             EEEeccCCcccccCCCCCHHHHHHHHHHHHhcc-cccc-ccC-------ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669          100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTV-LYL-------NHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (480)
Q Consensus       100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~-~~~-------~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA  170 (480)
                      .|||..++      |..+|.|++||.+.+.+.. +... ...       .+.+.+.+++++++++.+.++|+|++|+|++
T Consensus         4 iYlD~aa~------~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~   77 (391)
T d1p3wa_           4 IYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATES   77 (391)
T ss_dssp             EECBTTTC------CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHH
T ss_pred             EEeeCccc------cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHH
Confidence            48886543      4678999999988765421 1111 111       2345678889999999888899999999999


Q ss_pred             HHHHHHHHHh--hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHH
Q 011669          171 NELAIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID  248 (480)
Q Consensus       171 ~~~Alk~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~  248 (480)
                      +..++..+..  ..+++.||+.+..|++.......+..          .|+....+|....+.  .|    +++++++++
T Consensus        78 l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~----------~G~~v~~v~~~~~~~--~d----~~~~~~~i~  141 (391)
T d1p3wa_          78 DNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLER----------EGFEVTYLAPQRNGI--ID----LKELEAAMR  141 (391)
T ss_dssp             HHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHH----------TTCEEEEECCCTTSC--CC----HHHHHHHCC
T ss_pred             HHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHH----------cCCEEEEeCCCCCCe--Ec----HHHHHHhCC
Confidence            9999886543  34678899888888764433222211          133332222211111  12    567777774


Q ss_pred             ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--ccc
Q 011669          249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGI  326 (480)
Q Consensus       249 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~  326 (480)
                          +++++|+++.+++.+|.+.+    +++|.++|++||+++++|++|+ +|...     ++.....+|+++++  |.+
T Consensus       142 ----~~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~~-----~d~~~~~~D~~~~s~~k~~  207 (391)
T d1p3wa_         142 ----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKLP-----IDLSQLKVDLMSFSGHKIY  207 (391)
T ss_dssp             ----TTEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTBC-----CCTTTSCCSEEEEESTTTT
T ss_pred             ----CCcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCcc-----ccchhcccccccccccccc
Confidence                48999999999999999988    9999999999999999999996 44321     23334456776544  765


Q ss_pred             ccCccccccccCHHHHHhhcCCCccc------cCCCcHHHHHHHH-HHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHh
Q 011669          327 GNGIPLGAVVTTPEIAEVLTRRNYFN------TFGGNPVCTAAGH-AVLKVIQK--DKLQNNAHVVGSYLKERLTALKDK  397 (480)
Q Consensus       327 g~G~pig~v~~~~~~~~~l~~~~~~~------t~~~~~~~~aaa~-a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~  397 (480)
                      | +..+|+++++++......+...+.      ..+..+....+++ ..++...+  ....+++++...++.++|.++...
T Consensus       208 g-~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  286 (391)
T d1p3wa_         208 G-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEV  286 (391)
T ss_dssp             S-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTE
T ss_pred             C-CCceEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCe
Confidence            3 345688888887655544332221      1112222222222 22332221  122344444445554444433211


Q ss_pred             cCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC---------------------cCCCEEEEe
Q 011669          398 YGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG---------------------FYGNVFRIT  456 (480)
Q Consensus       398 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------~~~~~iRi~  456 (480)
                      .-.............+.+...         ....+...|.  ++.++.|.                     ...+.+||+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS  355 (391)
T d1p3wa_         287 YLNGDLEHGAPNILNVSFNYV---------EGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFS  355 (391)
T ss_dssp             EECSCTTTSCTTEEEEEETTS---------CHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEE
T ss_pred             eecccccccCceEEEEEeCCC---------ChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEe
Confidence            000000011122222332111         1233444443  44433221                     012579999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhh
Q 011669          457 PPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       457 p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      +++.+|++|||.++++|++++++
T Consensus       356 ~~~~nt~edid~l~~~l~~~l~~  378 (391)
T d1p3wa_         356 LGRFTTEEEIDYTIELVRKSIGR  378 (391)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998865

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.85  E-value=3.3e-20  Score=182.95  Aligned_cols=329  Identities=14%  Similarity=0.125  Sum_probs=185.2

Q ss_pred             CCCCHHHHHHHHHHHHhccc-----ccc--cc-CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCc
Q 011669          114 GHCHPYVVDSIVNQIKRIQH-----STV--LY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN  185 (480)
Q Consensus       114 Gh~~p~v~~A~~~~~~~~~~-----~~~--~~-~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~  185 (480)
                      |.-+|++++|+.+..+....     ...  .. ..+....++++++++++  .+.+++|+||++||.+++....  .+++
T Consensus        12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g--~e~~~~t~g~t~a~~~~~~al~--~~gd   87 (364)
T d2e7ja1          12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG--CDVARVTNGAREAKFAVMHSLA--KKDA   87 (364)
T ss_dssp             CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT--SSEEEEESSHHHHHHHHHHHHC--CTTC
T ss_pred             CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhC--cCEEEEECcHHHHHHHHHHHHh--CCCc
Confidence            45678888888763322110     000  00 11355678999999995  5789999999999999998654  3677


Q ss_pred             eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC-CCceEEEEEcccC
Q 011669          186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQ  264 (480)
Q Consensus       186 ~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-~~~~a~vi~epi~  264 (480)
                      .||+.+++|+....++.. .            |.....+|......+..|    .++++++++... ...++.|+++.++
T Consensus        88 ~Vi~~~~~h~s~~~~~~~-~------------g~~v~~v~~~~~~~~~i~----~~~l~~~i~~~~k~~~~~lv~i~~~~  150 (364)
T d2e7ja1          88 WVVMDENCHYSSYVAAER-A------------GLNIALVPKTDYPDYAIT----PENFAQTIEETKKRGEVVLALITYPD  150 (364)
T ss_dssp             EEEEETTCCHHHHHHHHH-T------------TCEEEEECCCCTTTCCCC----HHHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             EEEeecccccccchHHHh-c------------cceEEEeeeccccccccC----HHHHHhhhhhhcccCCceEEEeecCC
Confidence            888888777654333221 1            222222222112223234    677888886432 3467888889889


Q ss_pred             CCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHH
Q 011669          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIA  342 (480)
Q Consensus       265 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~  342 (480)
                      +++|.+.+    +++|.++|++||+++|+||+|+ +|..+     .+..+...|++++|  |.++++-++|+++++++++
T Consensus       151 n~tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~-----~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~  220 (364)
T d2e7ja1         151 GNYGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMP-----VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWA  220 (364)
T ss_dssp             TTTCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBC-----CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTT
T ss_pred             CCCceeec----chhheeccccccchhhccccch-hhhhh-----hcccccccceeeeccccccCCCCCEEEEEECHHHH
Confidence            99998877    9999999999999999999995 54332     12112235777655  9999655789999999877


Q ss_pred             HhhcCCCcc-----ccC---CCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhcCceee-EeccceeE
Q 011669          343 EVLTRRNYF-----NTF---GGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGD-VRGRGFLL  411 (480)
Q Consensus       343 ~~l~~~~~~-----~t~---~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~  411 (480)
                      +.+......     ..+   ..+.....+..++++.+.+  +.+.+. .+..+++++.|+++.  +..+.. ..... ..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~g--~~~~~~~~~~~~-~~  296 (364)
T d2e7ja1         221 EIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEE-VEKARRFAAEMEKLG--IKQLGDNPHNHD-LM  296 (364)
T ss_dssp             TTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHH-HHHHHHHHHHHHHTT--CEEESSSSCCSS-EE
T ss_pred             HHHHhhccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC--CeecCCCCCCcc-eE
Confidence            665432110     001   1112223333444444332  222222 234455666655541  111110 11111 11


Q ss_pred             EEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          412 GVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       412 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+..................+...+.++|+.....+. ...+|++ .+..|++|||+++++|++++++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~-~~~~~~~-~~~~t~edid~~~~~l~ei~~~  362 (364)
T d2e7ja1         297 FFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGL-TRYFKLS-TYGLSDEEVDYVLNAFKEIIEK  362 (364)
T ss_dssp             EEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTC-CSEEEEE-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccchHHHHHHhhccchHHHHHHHhcCCceecCCC-cceEEEe-ccCCCHHHHHHHHHHHHHHHHH
Confidence            1111000000000000011244456677776543222 3566766 3567999999999999999876

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.2e-20  Score=188.93  Aligned_cols=337  Identities=12%  Similarity=0.051  Sum_probs=193.1

Q ss_pred             EeccCCcccccCCC--CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC----C----CCCCEEEEeCCHHHHH
Q 011669          102 LDAFGGIATVCCGH--CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM----P----GNLKVVFFTNSGTEAN  171 (480)
Q Consensus       102 lD~~~g~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~----~----~~~~~v~f~~sGseA~  171 (480)
                      ||+..|.....-|.  ..|.|.+|+.+.+++.. .....+.....+|++.+++++    +    .+...+..+.+|+.+.
T Consensus        29 InL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~-~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (396)
T d2q7wa1          29 INLGIGVYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL  107 (396)
T ss_dssp             EESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCC-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred             EEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCC-CCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHH
Confidence            68877743333343  34889999888776542 111222344556666666543    1    1222445677777777


Q ss_pred             HHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       172 ~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      ..++.+.....+++.|++.+++|.++.........             ..+.+|......+..+    ..++++..... 
T Consensus       108 ~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~-------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~-  169 (396)
T d2q7wa1         108 RVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGL-------------EVREYAYYDAENHTLD----FDALINSLNEA-  169 (396)
T ss_dssp             HHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECEETTTTEEC----HHHHHHHHTTC-
T ss_pred             HHHHHHHhhcccceEEEEecCCCccchHHHHHcCC-------------eeEecccccccccccc----cchHHHHHHHh-
Confidence            77766554455788999999999887766655433             2222222111111111    33444444433 


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcc-cc----cccCCCcceeeecccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW-GF----EAHGVVPDIVTMAKGI  326 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~-~~----~~~~~~pDivt~sK~~  326 (480)
                      ..++.++++.+.+|++|.+ ++++.+++|.++|++|++++|+||+|.+|.+.+.... ..    +.......+.++||.+
T Consensus       170 ~~~~~~i~~~~P~NPTG~~-~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~  248 (396)
T d2q7wa1         170 QAGDVVLFHGCCHNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNF  248 (396)
T ss_dssp             CTTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT
T ss_pred             ccCcEEEEecCCcCCcCee-cCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccc
Confidence            3356677777777888876 4899999999999999999999999999876541111 01    1122233345789999


Q ss_pred             c-cCccccccccCHHHHHhhcCCC------ccccC-CCcHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH---HHHHHHh
Q 011669          327 G-NGIPLGAVVTTPEIAEVLTRRN------YFNTF-GGNPVCTAAGHAVLKVI-QKDKLQNNAHVVGSYL---KERLTAL  394 (480)
Q Consensus       327 g-~G~pig~v~~~~~~~~~l~~~~------~~~t~-~~~~~~~aaa~a~L~~i-~~~~~~~~~~~~~~~l---~~~L~~l  394 (480)
                      + .|+|+||++++++..+.+....      ...++ +.+...+.++.+.+..- ....+.+++.++.+++   ++.|.+.
T Consensus       249 ~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~  328 (396)
T d2q7wa1         249 GLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNT  328 (396)
T ss_dssp             TCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred             cccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8 6999999999876554433211      11333 34444555444443210 0112222332222222   2222222


Q ss_pred             HHhcCcee----eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHH
Q 011669          395 KDKYGIIG----DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLV  470 (480)
Q Consensus       395 ~~~~~~~~----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l  470 (480)
                      .++++...    .....|+|.|+.+.            .+.+.+.+.+.||++.+++      ||+.+ ..++++|+.++
T Consensus       329 L~~~~~~~~~~~~~~~~G~F~~~~l~------------~e~~~~L~~e~gV~~~~g~------Ri~~a-~l~~~~i~~~~  389 (396)
T d2q7wa1         329 LQEKGANRDFSFIIKQNGMFSFSGLT------------KEQVLRLREEFGVYAVASG------RVNVA-GMTPDNMAPLC  389 (396)
T ss_dssp             HHHTTCCSCCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECCTTC------EEEGG-GCCTTTHHHHH
T ss_pred             HHHhCCCCCcceecCCCeEEEeeCCC------------HHHHHHHHHhCCEEECCCC------EEEec-CCCHHHHHHHH
Confidence            22332211    13456778776541            1223334457899998764      88853 45788999999


Q ss_pred             HHHHHHH
Q 011669          471 DVMDYSL  477 (480)
Q Consensus       471 ~~l~~~l  477 (480)
                      ++|.+++
T Consensus       390 ~ai~~v~  396 (396)
T d2q7wa1         390 EAIVAVL  396 (396)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998864

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=6.4e-21  Score=190.92  Aligned_cols=336  Identities=15%  Similarity=0.061  Sum_probs=197.1

Q ss_pred             EeccCCcccccCCCC--CHHHHHHHHHHHHhcccccccc-CChHHHHHHHHHHHhCCC------CCCEEEEeCCHHHHHH
Q 011669          102 LDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFFTNSGTEANE  172 (480)
Q Consensus       102 lD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~l~e~L~~~~~~------~~~~v~f~~sGseA~~  172 (480)
                      ||+..|.+...-|..  .|.|.+|... +.........| +.....+|++.+++++..      ..++++.+.+++.+..
T Consensus        29 InL~iG~~~d~~g~~p~~~~V~~A~~~-l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~  107 (397)
T d3tata_          29 VNLSIGLYYNEDGIIPQLQAVAEAEAR-LNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGA  107 (397)
T ss_dssp             EECSCCSCCCTTSSCCCCHHHHHHHHH-HTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHH
T ss_pred             EEccCCCCcCCCCCCCCcHHHHHHHHH-HHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHH
Confidence            677766544444543  3677776543 32221112223 355667788888776531      2456777776666555


Q ss_pred             HHHHHHH--hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 011669          173 LAIMMAR--LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG  250 (480)
Q Consensus       173 ~Alk~ar--~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~  250 (480)
                      .++.++.  ...+++.|++.+++|.++.........             ..+.+|....+.+..|    .+++.+.+...
T Consensus       108 ~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~-------------~~~~v~~~~~~~~~~~----~~~~~~~~~~~  170 (397)
T d3tata_         108 LKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-------------EVSTYPWYDEATNGVR----FNDLLATLKTL  170 (397)
T ss_dssp             HHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTC-------------CCEECCCCCTTTSSCC----HHHHHHHHTTC
T ss_pred             HHHHHHHhhhcCCCCcceecccCccccHHHHHHcCC-------------EEEEEecchhhccccc----hHHHHHHhhhc
Confidence            5554332  234778999999999887766654432             2233332222223223    34444444432


Q ss_pred             CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcc-cc----cccCCCcceeeeccc
Q 011669          251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW-GF----EAHGVVPDIVTMAKG  325 (480)
Q Consensus       251 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~-~~----~~~~~~pDivt~sK~  325 (480)
                       ++++.++++.+.+|++|.+ ++++.+++|.++|++||+++|+||+|.+|.+.+.... ..    .......-+.++||.
T Consensus       171 -~~~~~~~~~~~p~NPTG~~-~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~  248 (397)
T d3tata_         171 -PARSIVLLHPCCHNPTGAD-LTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKI  248 (397)
T ss_dssp             -CSSCCCEECSSSCSSSCCC-CCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHH
T ss_pred             -ccccEEEEecCCCCCCCee-CCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccc
Confidence             3466677777788888876 5899999999999999999999999999866541111 11    111122334579999


Q ss_pred             cc-cCccccccccCHHHHHhhcC-------CCccccCCCcHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhHH
Q 011669          326 IG-NGIPLGAVVTTPEIAEVLTR-------RNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKD  396 (480)
Q Consensus       326 ~g-~G~pig~v~~~~~~~~~l~~-------~~~~~t~~~~~~~~aaa~a~L~~i~-~~~~~~~~~~~~~~l~~~L~~l~~  396 (480)
                      ++ .|+|+||++++...++....       .......+.+...++++...+..-. ...+.++++.+.++++.+.+.+.+
T Consensus       249 ~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  328 (397)
T d3tata_         249 FSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVK  328 (397)
T ss_dssp             HTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 59999999977654332221       1222334445555555555443211 123444455555555554444443


Q ss_pred             hcC-------ceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcCCCEEEEeCCCCCCHHHHHH
Q 011669          397 KYG-------IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFYGNVFRITPPLCFTKEDADY  468 (480)
Q Consensus       397 ~~~-------~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~  468 (480)
                      .+.       +.......|+|.|+.+.             .+.++.| .+.||.+.+++      ||+.+ ++++++|+.
T Consensus       329 ~L~~~~~~~~~~~~~~~~G~F~~~~ls-------------~e~~~~L~~e~~V~l~~g~------Ri~~a-~~~~~~i~~  388 (397)
T d3tata_         329 VLSTEMPERNFDYLLNQRGMFSYTGLS-------------AAQVDRLREEFGVYLIASG------RMCVA-GLNTANVQR  388 (397)
T ss_dssp             TTTTTCTTSCTTHHHHCCSSBCCCCCC-------------HHHHHHHTTTTCEECCSSS------CCBTT-SCCTTTHHH
T ss_pred             HHHHhCCCCceEEEcCCCceEEecCcC-------------HHHHHHHHHhCCEEeCCCC------EEEec-cCCHHHHHH
Confidence            331       11124566778777551             1234455 45699998764      88854 568899999


Q ss_pred             HHHHHHHHH
Q 011669          469 LVDVMDYSL  477 (480)
Q Consensus       469 ~l~~l~~~l  477 (480)
                      +.++|++++
T Consensus       389 ~~~ai~~v~  397 (397)
T d3tata_         389 VAKAFAAVM  397 (397)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998763

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.83  E-value=5.3e-20  Score=176.68  Aligned_cols=320  Identities=12%  Similarity=0.035  Sum_probs=176.8

Q ss_pred             CCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcC
Q 011669          113 CGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRN  192 (480)
Q Consensus       113 lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~  192 (480)
                      .| +||+|++|+.++....  ....+..+...+++++++++++.+.++|+||+||||||..|+..+..  ++++++....
T Consensus        10 ~g-~~P~v~eAl~~~~~~~--~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~--~~~~~~~~~~   84 (340)
T d1svva_          10 VG-MHPKILDLMARDNMTQ--HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR--PWEAVIATQL   84 (340)
T ss_dssp             SC-CCHHHHHHHHHHTTCC--CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC--TTEEEEEETT
T ss_pred             CC-CCHHHHHHHHHHhhcC--CCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhh--hccccccccc
Confidence            35 6899999999865442  23334577888999999999988778999999999999999987654  5667777766


Q ss_pred             CcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHc--cCCCceEEEEEcccCCCCcce
Q 011669          193 AYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF--GTSGHVAGFLSESIQGVGGII  270 (480)
Q Consensus       193 ~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~  270 (480)
                      .++..............          .....+...   + .+.    +...+....  ........+++...++++|.+
T Consensus        85 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~---~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (340)
T d1svva_          85 GHISTHETGAIEATGHK----------VVTAPCPDG---K-LRV----ADIESALHENRSEHMVIPKLVYISNTTEVGTQ  146 (340)
T ss_dssp             SHHHHSSTTHHHHTTCC----------EEEECCTTS---C-CCH----HHHHHHHHHSCSTTSCEEEEEEEESSCTTSCC
T ss_pred             cceeeeeccccccccee----------eeecccccc---c-ccc----hhHHHHhhhhhcccCCcceeeeeccccccccc
Confidence            66554433332222110          000001000   0 111    122222221  112234445555555555555


Q ss_pred             eCCCChHHHHHHHHHHhCCEEEEcccccCccccCC-CcccccccCCCcceeeeccccccCc-cccccccCHHHHHhhcCC
Q 011669          271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRR  348 (480)
Q Consensus       271 ~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~-~~~~~~~~~~~pDivt~sK~~g~G~-pig~v~~~~~~~~~l~~~  348 (480)
                      . +.+.++.+.+.|+++|.++++|+++.+...... ..+.........++.++++..+.+. ..++..............
T Consensus       147 ~-~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (340)
T d1svva_         147 Y-TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHL  225 (340)
T ss_dssp             C-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHH
T ss_pred             c-cHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhh
Confidence            3 556688899999999999999999975432220 1111111111234555565555432 223333333322211111


Q ss_pred             --CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCH
Q 011669          349 --NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK  426 (480)
Q Consensus       349 --~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~  426 (480)
                        ....+......+.+++.+.++........++......++++.|+++    +.....+..+.++.+.+.          
T Consensus       226 ~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~p~~~~~v~~~~~----------  291 (340)
T d1svva_         226 IKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC----GIRLAWPSASNQLFPILE----------  291 (340)
T ss_dssp             HHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT----TCCBSSCCSSSEECBEEE----------
T ss_pred             cccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC----CCeeecCCCceEEEEeCC----------
Confidence              1223333334444444443332222334455555555555555554    332222344555555542          


Q ss_pred             HHHHHHHHHHHHcCce----eeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          427 AETLYIMDKMKEMGVL----VGKGGFYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       427 ~~~~~~~~~l~~~Gv~----v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                         ......|.+++..    ..+.+  .+++||++++.+|++|||+++++|++
T Consensus       292 ---~~~~~~l~~~~~~~~~~~~~~~--~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         292 ---NTMIAELNNDFDMYTVEPLKDG--TCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             ---HHHHHHHTTTEECEEEEEETTT--EEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhhhhhcccccCCC--CcEEEEECCCCCCHHHHHHHHHHHhc
Confidence               1234455555443    33322  57899999999999999999999986

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.3e-19  Score=177.53  Aligned_cols=320  Identities=15%  Similarity=0.105  Sum_probs=200.0

Q ss_pred             CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcc
Q 011669          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH  195 (480)
Q Consensus       117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yh  195 (480)
                      +|+|++||....  ..|.+.. ..+.+.+.++.|++.++.+. ..|+|+.|||+|+++++.....  +++++++...+++
T Consensus        31 ~~~Vl~am~~~~--i~HRs~~-f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~--~~~~~~~~~~~~~  105 (388)
T d1h0ca_          31 PPRIMAAGGLQM--IGSMSKD-MYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLE--PGDSFLVGANGIW  105 (388)
T ss_dssp             CHHHHHHHTCCC--CCTTSHH-HHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCC--SSCCEEECBSSHH
T ss_pred             CHHHHHHhCcCC--CCCCCHH-HHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhc--cCCceeeecccce
Confidence            688888874321  3343322 24567888999999987643 3689999999999999987643  6778888888777


Q ss_pred             cccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCC
Q 011669          196 GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPG  275 (480)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~  275 (480)
                      +........... .        .+..+..+.  ...  .|    .+++++.+..   .+++.+.+..+.+.+|.+.+   
T Consensus       106 ~~~~~~~~~~~~-~--------~~~~~~~~~--~~~--~~----~~~~~~~~~~---~~~~~v~~~~~~n~tG~i~p---  162 (388)
T d1h0ca_         106 GQRAVDIGERIG-A--------RVHPMTKDP--GGH--YT----LQEVEEGLAQ---HKPVLLFLTHGESSTGVLQP---  162 (388)
T ss_dssp             HHHHHHHHHHHC-----------CBCCBCCT--TCC--CC----HHHHHHHHHH---HCCSEEEEESEETTTTEECC---
T ss_pred             eeeecccccccc-c--------cccccccCC--ccc--cc----hHHHHHHhcc---CCcceEEEeeeeeccccccC---
Confidence            654433222110 0        011111110  001  12    3444444432   25678888888899999988   


Q ss_pred             hHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCCCc---
Q 011669          276 YLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNY---  350 (480)
Q Consensus       276 ~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~~~---  350 (480)
                       +++|.++|++||+++++|.+|+ +|..     .++......|++++|  |.+++.-.+|+++.+++..+.+.....   
T Consensus       163 -i~~i~~~~~~~g~~~~vD~~qs-~g~~-----~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~  235 (388)
T d1h0ca_         163 -LDGFGELCHRYKCLLLVDSVAS-LGGT-----PLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPF  235 (388)
T ss_dssp             -CTTHHHHHHTTTCEEEEECTTT-TTTS-----CCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCS
T ss_pred             -HHHHHHHhhcccccceeccccc-cccc-----cccccccccceecccccccccCCCceEEEeecHHHHHhhhhcccccc
Confidence             9999999999999999999997 4322     133344556877766  888765566788888887766543110   


Q ss_pred             --------------------cccCCCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCceeeEec-
Q 011669          351 --------------------FNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRG-  406 (480)
Q Consensus       351 --------------------~~t~~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-  406 (480)
                                          ......+..+..+..++++.+.+.   ...++..++.+++++.+.++... ....+... 
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~-~~~~~~~~r  314 (388)
T d1h0ca_         236 SFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQ-LFVKDPALR  314 (388)
T ss_dssp             CSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-BSSCSGGGB
T ss_pred             ccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcc-cccCCHHHc
Confidence                                011123445566666777766553   44555666677777776665211 11111111 


Q ss_pred             cceeEEEEEecCCCcCCCCHHHHHHHHHHHHHc-CceeeccC--cCCCEEEEe-CCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          407 RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEM-GVLVGKGG--FYGNVFRIT-PPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       407 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~-p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      ...++.+.+..        ......+.+.|+++ ||.+..|.  ..++.|||+ +...+|++|||.++++|+++|+++
T Consensus       315 s~~i~~~~~p~--------~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l  384 (388)
T d1h0ca_         315 LPTVTTVAVPA--------GYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHC  384 (388)
T ss_dssp             CTTEEEEECCT--------TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEEECCC--------CCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            12234444421        12245677777654 99887652  235789999 567889999999999999999864

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=5e-20  Score=184.12  Aligned_cols=320  Identities=12%  Similarity=0.024  Sum_probs=183.4

Q ss_pred             CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhC----C-CCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEc
Q 011669          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM----P-GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR  191 (480)
Q Consensus       117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~----~-~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~  191 (480)
                      .|.|.+|+++.+++... ....+.....+|++++++++    . ......+.+.+|+.+...++.+.....+++.|++.+
T Consensus        46 ~~~V~~A~~~~~~~~~~-~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~  124 (394)
T d2ay1a_          46 MRAVHAAEQRMLETETT-KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSD  124 (394)
T ss_dssp             CHHHHHHHHHHHHHCCC-CCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             CHHHHHHHHHHhhCCCC-CCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEec
Confidence            48999999887765421 01122344555666665553    2 122345677888777777776655556788999999


Q ss_pred             CCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCccee
Q 011669          192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE  271 (480)
Q Consensus       192 ~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~  271 (480)
                      ++|-.+.........             ..+.+|......+..+    .+++++..... .+++.++++.+.+|++|.+ 
T Consensus       125 p~~~~y~~~~~~~g~-------------~~v~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~i~~~~~p~NPTG~~-  185 (394)
T d2ay1a_         125 PTWPNHVSIMNFMGL-------------PVQTYRYFDAETRGVD----FEGMKADLAAA-KKGDMVLLHGCCHNPTGAN-  185 (394)
T ss_dssp             SCCHHHHHHHHHHTC-------------CEEEEECEETTTTEEC----HHHHHHHHHTC-CTTCEEEEESSSCTTTCCC-
T ss_pred             ccccchHHHHHHcCC-------------EEEEecccchhccccc----chhHHHHHhhc-ccCcEEEEeCCCCCCCCCC-
Confidence            999766555444332             2222221111111112    34444444433 3356677777788888876 


Q ss_pred             CCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccc---c-cc-CCCcceeeeccccc-cCccccccccCHHHHHhh
Q 011669          272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF---E-AH-GVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVL  345 (480)
Q Consensus       272 ~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~---~-~~-~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~l  345 (480)
                      ++++.+++|.++|++|++++|+||+|.+|.+++......   . .. .....+.++||.++ .|+|+||++++....+..
T Consensus       186 ~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~  265 (394)
T d2ay1a_         186 LTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATR  265 (394)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHH
T ss_pred             CCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhchhHHHHH
Confidence            589999999999999999999999999997665111000   0 01 11223447899998 699999999876655433


Q ss_pred             cCCC------ccccC-CCcHHHHHHHHHHHHH--hhh------hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEecccee
Q 011669          346 TRRN------YFNTF-GGNPVCTAAGHAVLKV--IQK------DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL  410 (480)
Q Consensus       346 ~~~~------~~~t~-~~~~~~~aaa~a~L~~--i~~------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~  410 (480)
                      ....      ...++ +.+...++.+...+..  +.+      +.+.++++++++.+.+.|+++.-...+.......|+|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F  345 (394)
T d2ay1a_         266 ELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMF  345 (394)
T ss_dssp             HHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSE
T ss_pred             HHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCceeE
Confidence            2210      11222 2333333333333221  000      1123333334444444444432111111123455777


Q ss_pred             EEEEEecCCCcCCCCHHHHHHHHHHH-HHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 011669          411 LGVEFVTDRQLKTPAKAETLYIMDKM-KEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYS  476 (480)
Q Consensus       411 ~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~  476 (480)
                      .|+.+.             .+.++.| .++||++.+++      ||+.+ .+++++|+.+.++|.++
T Consensus       346 ~~~~ls-------------~~~~~~L~~~~~V~~~~g~------Ri~~a-~l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         346 SRLGAT-------------PEQVKRIKEEFGIYMVGDS------RINIA-GLNDNTIPILARAIIEV  392 (394)
T ss_dssp             EECCCC-------------HHHHHHHHHHHCEECCTTC------EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             EecCcC-------------HHHHHHHHHhCCEEecCCC------EEEec-CCCHHHHHHHHHHHHHh
Confidence            776541             1234444 57899998763      88854 57889999999998875

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.80  E-value=1.1e-19  Score=182.15  Aligned_cols=315  Identities=13%  Similarity=0.014  Sum_probs=186.5

Q ss_pred             cccCCCCCHHHHHHHH-HHHHh------ccccccccCC----hHHHHHHHHHHHhC---C---CCCCEEEEeCCHHHHHH
Q 011669          110 TVCCGHCHPYVVDSIV-NQIKR------IQHSTVLYLN----HAIADFAEALASKM---P---GNLKVVFFTNSGTEANE  172 (480)
Q Consensus       110 ~~~lGh~~p~v~~A~~-~~~~~------~~~~~~~~~~----~~~~~l~e~L~~~~---~---~~~~~v~f~~sGseA~~  172 (480)
                      +.+++|++|.+.+..- ++.+.      .+|....+.+    ....+|.+.|++++   +   .+.+.|+++||++|+++
T Consensus        58 ~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~  137 (425)
T d2hoxa1          58 SADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIH  137 (425)
T ss_dssp             CEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHH
T ss_pred             eeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHH
Confidence            3456788888777632 22221      2343322221    22356777777654   2   13357999999999999


Q ss_pred             HHHHHHHh------hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          173 LAIMMARL------YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       173 ~Alk~ar~------~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      +++.....      ..++++||+..|.|-.+...+....+ ..++                    |..|    .+.+++.
T Consensus       138 ~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~-~~~~--------------------~~~D----~~~~~~~  192 (425)
T d2hoxa1         138 GLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDK-KGYV--------------------WAGN----AANYVNV  192 (425)
T ss_dssp             HHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCB-TTEE--------------------EEEE----GGGGTTC
T ss_pred             HHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCC-CCCc--------------------cCCC----HHHHHhh
Confidence            99986532      23568999999999776554432221 1111                    1112    1233322


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeecccc
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI  326 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~  326 (480)
                      ++    .+++++++...+|++|.+..           +..+++.+|.||+|.+...+.  .  ....+...-+-+|||.+
T Consensus       193 ~~----~~~~ii~l~sPnNPtG~l~~-----------~v~~~~~~I~DEaY~~~~f~~--~--~~~~~~~Ivl~S~SK~f  253 (425)
T d2hoxa1         193 SN----PEQYIEMVTSPNNPEGLLRH-----------AVIKGCKSIYDMVYYWPHYTP--I--KYKADEDILLFTMSKFT  253 (425)
T ss_dssp             SC----GGGEEEEEESSCTTTCCCCC-----------CSSTTCEEEEECTTCSTTTSC--C--CSCBCCSEEEEEHHHHT
T ss_pred             CC----CCceEEEEECCCCCCcchhh-----------hhhhCCEEEEeccccCccccc--h--hhhcCCeEEEEeCHHhc
Confidence            22    25555555555566676521           223689999999995432221  1  01112222234799999


Q ss_pred             c-cCccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHHHhH
Q 011669          327 G-NGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---------DKLQNNAHVVGSYLKERLTALK  395 (480)
Q Consensus       327 g-~G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~---------~~~~~~~~~~~~~l~~~L~~l~  395 (480)
                      | +|+|+||++++ +++++.+......++++.+.+++.+++++|+....         .++.+..++.-+..++.|.+..
T Consensus       254 glaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L  333 (425)
T d2hoxa1         254 GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALL  333 (425)
T ss_dssp             SCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9 89999997665 66777776655667888899999999998875421         1122222222222222333322


Q ss_pred             HhcCce---------------eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC---CCEEEEeC
Q 011669          396 DKYGII---------------GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY---GNVFRITP  457 (480)
Q Consensus       396 ~~~~~~---------------~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---~~~iRi~p  457 (480)
                      .+.+..               ......+.+.|+.+..+.         ...+.+.|+++||++.||..|   .+++||+ 
T Consensus       334 ~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~---------~~~~~~lL~e~gI~v~pGs~FG~~~~yvRis-  403 (425)
T d2hoxa1         334 DQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE---------DKDCYQTFQNGRINTQNGVGFEASSRYVRLS-  403 (425)
T ss_dssp             TTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG---------GCSHHHHHHHTTEECEEGGGGTSCTTEEEEE-
T ss_pred             HhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh---------HHHHHHHHHhCCEEEEechhcCCCCCEEEEE-
Confidence            222211               123445566777764321         122556788999999998554   3699999 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Q 011669          458 PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       +..+++++++++++|++++++
T Consensus       404 -l~~~~e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         404 -LIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             -CSSCHHHHHHHHHHHHHHHTC
T ss_pred             -ecCCHHHHHHHHHHHHHHHhc
Confidence             788999999999999999864

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.79  E-value=6e-18  Score=169.11  Aligned_cols=331  Identities=15%  Similarity=0.097  Sum_probs=206.2

Q ss_pred             CCCEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccc------cccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Q 011669           97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST------VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEA  170 (480)
Q Consensus        97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~------~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA  170 (480)
                      ++..|||..+      .|..+..|.+++.+.+.+.....      .....+..++.+++++++++.+.++++|+.++|++
T Consensus        26 ~~~iYLd~as------~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~   99 (404)
T d1qz9a_          26 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN   99 (404)
T ss_dssp             TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred             CCCEEcCCcc------cccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHH
Confidence            4678999643      25667889999999876532110      01112456789999999999888999999999999


Q ss_pred             HHHHHHHHHh----hcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHH
Q 011669          171 NELAIMMARL----YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL  246 (480)
Q Consensus       171 ~~~Alk~ar~----~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~  246 (480)
                      +..++..+..    ...++.+|+.+..++........... .   ....  .+....       .  .+    .++++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~-~---~~~~--~~~~~~-------~--~~----~~~~~~~  160 (404)
T d1qz9a_         100 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLA-D---MLQQ--GYTLRL-------V--DS----PEELPQA  160 (404)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHH-H---HHCS--SCEEEE-------E--SS----GGGHHHH
T ss_pred             HHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhh-e---eeee--ceeccc-------c--cc----chhHHHh
Confidence            9887764322    23456677776666543322221111 0   0000  000000       0  01    2455666


Q ss_pred             HHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--c
Q 011669          247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--K  324 (480)
Q Consensus       247 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K  324 (480)
                      ++    +++++|.+..+++.+|.+.|    +++|.++|+++|+++++|-+|+ +|...     ++.....+|+++++  |
T Consensus       161 i~----~~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~~-----~~~~~~~~d~~~~s~~K  226 (404)
T d1qz9a_         161 ID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP-----VDLHQAGADYAIGCTYK  226 (404)
T ss_dssp             CS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC-----CCHHHHTCSEEEECSSS
T ss_pred             cC----CCceEEEEecccccccceec----HHHHhccccccccceeEEeecc-ccccc-----cccccccceEEEEechh
Confidence            64    48999999999999999998    9999999999999999999997 44321     23333355666554  8


Q ss_pred             ccccCc-cccccccCHHHHHhhcCCCcc-----------------------ccCCCcHHHHHHHHHHHHHhhh---hHHH
Q 011669          325 GIGNGI-PLGAVVTTPEIAEVLTRRNYF-----------------------NTFGGNPVCTAAGHAVLKVIQK---DKLQ  377 (480)
Q Consensus       325 ~~g~G~-pig~v~~~~~~~~~l~~~~~~-----------------------~t~~~~~~~~aaa~a~L~~i~~---~~~~  377 (480)
                      .+.+|- ..|+++.+++..+.+......                       .....+..+.....+.++.+.+   +...
T Consensus       227 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  306 (404)
T d1qz9a_         227 YLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR  306 (404)
T ss_dssp             TTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHH
Confidence            876543 356777777665544321100                       1112344555555555555443   4455


Q ss_pred             HHHHHHHHHHHHHHHHhHHhcCc--ee--eEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEE
Q 011669          378 NNAHVVGSYLKERLTALKDKYGI--IG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVF  453 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~~~~~--~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  453 (480)
                      ++.......+...+..+....+.  ++  +...++.++.+.+        +.   ...+.+.|.++||++....  ++.|
T Consensus       307 ~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~--------~~---~~~v~~~L~~~gi~~~~r~--~~~l  373 (404)
T d1qz9a_         307 RKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEH--------PE---GYAVIQALIDRGVIGDYRE--PRIM  373 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEEC--------TT---HHHHHHHHHTTTEECEEET--TTEE
T ss_pred             HHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEec--------CC---HHHHHHHHHHCCCEEeecC--CCeE
Confidence            55566666666655555433221  11  1222344444443        11   4568888999999765332  4689


Q ss_pred             EEeC-CCCCCHHHHHHHHHHHHHHHhh
Q 011669          454 RITP-PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       454 Ri~p-~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      ||+| ++.+|++|||+++++|+++|++
T Consensus       374 RiS~~h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         374 RFGFTPLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             EEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999 4678999999999999999875

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.79  E-value=8.6e-18  Score=165.29  Aligned_cols=321  Identities=15%  Similarity=0.070  Sum_probs=193.9

Q ss_pred             CHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCC--EEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669          117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK--VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (480)
Q Consensus       117 ~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~--~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y  194 (480)
                      ++.|++|+.+..  ..|. ..+......+.++.|+++++.+.+  .++|++|||++++.++.....  +++++++....+
T Consensus        12 ~~~V~~A~~~~~--~~~~-~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~--~~~~~~~~~~~~   86 (361)
T d1m32a_          12 SRTVKEAMLFDS--CTWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG--PQDKVLIVSNGA   86 (361)
T ss_dssp             CHHHHHTTCCCC--CTTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC--TTCCEEEEESSH
T ss_pred             CHHHHHHhhhhc--cCCC-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhh--hccccceeeehh
Confidence            467777653321  1121 122346678899999999876544  388899999999999975432  455666665555


Q ss_pred             ccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCC
Q 011669          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (480)
Q Consensus       195 hG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  274 (480)
                      ++...........         ........+...  .  .+.  ..+......    ..+++.+.+..+.+.+|.+.+  
T Consensus        87 ~~~~~~~~~~~~~---------~~~~~~~~~~~~--~--~~~--~~~~~~~~~----~~~~~~v~~~~~~~~tG~~~~--  145 (361)
T d1m32a_          87 YGARMVEMAGLMG---------IAHHAYDCGEVA--R--PDV--QAIDAILNA----DPTISHIAMVHSETTTGMLNP--  145 (361)
T ss_dssp             HHHHHHHHHHHHT---------CCEEEEECCTTS--C--CCH--HHHHHHHHH----CTTCCEEEEESEETTTTEECC--
T ss_pred             hhhhHHHHhhhhh---------cccccccccccC--C--ccc--hhhHHHHHh----ccCccceEEEeeecccccchh--
Confidence            5443332221110         011111111100  0  010  011222222    347888899999999999988  


Q ss_pred             ChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCCCcc-
Q 011669          275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNYF-  351 (480)
Q Consensus       275 ~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~~~~-  351 (480)
                        +++|.++|++||+++++|-+|+ +|..     .++......|++++|  |.+++...+|+++.+++..+.......+ 
T Consensus       146 --i~~i~~~~~~~g~~~~vDa~qs-~G~~-----~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~  217 (361)
T d1m32a_         146 --IDEVGALAHRYGKTYIVDAMSS-FGGI-----PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSL  217 (361)
T ss_dssp             --HHHHHHHHHHHTCEEEEECTTT-TTTS-----CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCS
T ss_pred             --hhhhhhhhcccceeeEeecccc-cCcc-----cccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccc
Confidence              9999999999999999999998 4432     134445567888877  8887656678999999888766543211 


Q ss_pred             -----------------ccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCce--ee--Eecccee
Q 011669          352 -----------------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII--GD--VRGRGFL  410 (480)
Q Consensus       352 -----------------~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~--~~--v~g~g~~  410 (480)
                                       ..+..+.....+...++..+.++...+...+..+.....+.+.....+..  ..  .+.. .+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~-~v  296 (361)
T d1m32a_         218 SLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSP-II  296 (361)
T ss_dssp             TTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCS-SE
T ss_pred             cccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCC-cE
Confidence                             12344556666666777665555444444333343444444444333322  11  2222 23


Q ss_pred             EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 011669          411 LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFY-GNVFRITPPLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       411 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~iRi~p~~~~t~~~id~~l~~l~~~l~  478 (480)
                      ..+.+..+..      .....+.+.|.++|+.+.+|... ++.+||+..-.++++||++++++|+++|-
T Consensus       297 ~~~~~p~~~~------~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~  359 (361)
T d1m32a_         297 TAFYSPEDPQ------YRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMY  359 (361)
T ss_dssp             EEEECCCCTT------CCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred             EEEECCCCCC------CCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence            3444322111      12456888999999999876443 56899985435799999999999999864

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=2.8e-17  Score=162.69  Aligned_cols=333  Identities=17%  Similarity=0.145  Sum_probs=195.2

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccc-ccccc-----CChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLY-----LNHAIADFAEALASKMPGNLKVVFFTNSGTEANE  172 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~~~-----~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~  172 (480)
                      |-|||..++      +..++.|.|++.+.+.+... ....+     ....+.+.+++++++++.+.++|+|++|+||++.
T Consensus         2 ~iyld~a~~------~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~   75 (376)
T d1eg5a_           2 RVYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESIN   75 (376)
T ss_dssp             CEECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHH
T ss_pred             EEEEECccc------ccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHH
Confidence            568887543      35679999999998876421 11111     1233456788999999988889999999999999


Q ss_pred             HHHHHH-HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 011669          173 LAIMMA-RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT  251 (480)
Q Consensus       173 ~Alk~a-r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~  251 (480)
                      .++... .....++++++....+|+...........         .|+....+|....+.  .|    .++++++++   
T Consensus        76 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~---------~g~~v~~vp~~~~~~--id----~~~l~~~i~---  137 (376)
T d1eg5a_          76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSM---------KGFKVKYVPVDSRGV--VK----LEELEKLVD---  137 (376)
T ss_dssp             HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHH---------TTCEEEECCBCTTSC--BC----HHHHHHHCC---
T ss_pred             hhhhcccccccccCcccccccccchhhHHHHHHHHh---------cCCEEEEEcCCCCCe--EC----HHHHHHhcC---
Confidence            998754 33334555555555665554443322110         134333333221111  22    567777774   


Q ss_pred             CCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh--CCEEEEcccccCccccCCCcccccccCCCcceee--eccccc
Q 011669          252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIG  327 (480)
Q Consensus       252 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g  327 (480)
                       +++++|++..+++.+|.+.+    ++++.++|+++  |+++++|.+|. +|...     .+.....+|+++  ..|.+|
T Consensus       138 -~~t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~~-----~d~~~~~~D~~~~s~~K~~g  206 (376)
T d1eg5a_         138 -EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP-----FSLEKLEVDYASFSAHKFHG  206 (376)
T ss_dssp             -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC-----CCCTTTCCSEEEEEGGGGTS
T ss_pred             -CCceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec-ccccc-----ccccccCccceecccceeec
Confidence             48999999999999999988    99999998666  99999999996 54322     333344567765  459875


Q ss_pred             cCccccccccCHHHHHhhcCCCcc-------ccCCCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHhc
Q 011669          328 NGIPLGAVVTTPEIAEVLTRRNYF-------NTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKY  398 (480)
Q Consensus       328 ~G~pig~v~~~~~~~~~l~~~~~~-------~t~~~~~~~~aaa~a~L~~i~~--~~~~~~~~~~~~~l~~~L~~l~~~~  398 (480)
                      . -..|++..+++.  .+.+...+       .....+......+.+..+....  ...........+++.+.|.......
T Consensus       207 p-~G~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  283 (376)
T d1eg5a_         207 P-KGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHI  283 (376)
T ss_dssp             C-TTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             C-CCceeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccc
Confidence            2 333444444432  12221111       1112233444444333333221  2333444444555555554432111


Q ss_pred             CceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc---------------------CCCEEEEeC
Q 011669          399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF---------------------YGNVFRITP  457 (480)
Q Consensus       399 ~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~p  457 (480)
                      -.....+..+ ...+.+..         .....+...|.++||.+++|..                     ..+.+||+|
T Consensus       284 ~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~  353 (376)
T d1eg5a_         284 ITPLEISLPN-TLSVSFPN---------IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISL  353 (376)
T ss_dssp             CSCTTSBCTT-EEEEECTT---------CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEEC
T ss_pred             cccccccccc-eeeeccCC---------CCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEec
Confidence            0000011111 11222211         1145677778889998865410                     024699999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Q 011669          458 PLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       458 ~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .+.+|++|||.++++|+++++-
T Consensus       354 ~~ynt~edid~l~~~L~~iv~~  375 (376)
T d1eg5a_         354 CKYNTEEEVDYFLKKIEEILSF  375 (376)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999864

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.76  E-value=9.4e-19  Score=173.01  Aligned_cols=294  Identities=13%  Similarity=0.023  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHhCCC-CCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEE-cCCcccccccccccccCCCccccccCCCe
Q 011669          142 AIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISL-RNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~-~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~-~~~yhG~~~~~~~~~~~~~~~~~~~~~g~  219 (480)
                      ...++++...+.+.. ..+.+++++||++|+..++.. .  .+++++++. +...|......+.+.            |+
T Consensus        51 ~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~a-l--~~~~~vi~~~~~~~~~~~~~~~~l~------------g~  115 (366)
T d2aeua1          51 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILA-L--KPKKVIHYLPELPGHPSIERSCKIV------------NA  115 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH-H--CCSEEEEECSSSSCCTHHHHHHHHT------------TC
T ss_pred             hHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHH-h--CCCCEEEEecCCCcchhHHHHHHhc------------CC
Confidence            345666666666653 346799999999999998864 3  266666654 323444433333332            22


Q ss_pred             eEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCC-CCcceeCCCChHHHHHHHHHHhCCEEEEccccc
Q 011669          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA  298 (480)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~-~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t  298 (480)
                      ..+..         +|    ++++++.++    +++++|+++...+ +++.+.    .|++|.++|++||+++|+||+|.
T Consensus       116 ~~v~~---------~d----~e~l~~~i~----~~tk~i~~~~p~n~~~~~~~----~l~~i~~ia~~~~~~~i~De~y~  174 (366)
T d2aeua1         116 KYFES---------DK----VGEILNKID----KDTLVIITGSTMDLKVIELE----NFKKVINTAKNKEAIVFVDDASG  174 (366)
T ss_dssp             EEEEE---------SC----HHHHHTTCC----TTEEEEEECBCTTSCBCCHH----HHHHHHHHHHHHTCCEEEECTTH
T ss_pred             eEECC---------CC----HHHHHHhcC----CCceEEEEEecCCCCcCCHH----HHHHHHHHhccCcEEEEEecCcc
Confidence            22221         12    566666664    4788888876544 443333    49999999999999999999996


Q ss_pred             CccccCC-CcccccccCCCcceeeeccccc-cCccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHH
Q 011669          299 GFARTGS-HFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKL  376 (480)
Q Consensus       299 gfgr~G~-~~~~~~~~~~~pDivt~sK~~g-~G~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~  376 (480)
                      ...+.+. ... ....+  .|++++||+.+ +|+++||+++++++++.+.......+++.+|..+.++.++|+.+.-+.+
T Consensus       175 ~~~~~~~~~~~-~~~~~--~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~  251 (366)
T d2aeua1         175 ARVRLLFNQPP-ALKLG--ADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERI  251 (366)
T ss_dssp             HHHHHHTTCCC-HHHHT--CSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHH
T ss_pred             ccccccccCCC-HhhcC--ceEEEecccccccccceeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHH
Confidence            3211110 110 11223  46665554444 5799999999999999887654445566778888888888875432222


Q ss_pred             H---HHHHHHHHHHHHHHHHhHHhcCceee--Ee-ccceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCcC
Q 011669          377 Q---NNAHVVGSYLKERLTALKDKYGIIGD--VR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGFY  449 (480)
Q Consensus       377 ~---~~~~~~~~~l~~~L~~l~~~~~~~~~--v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~  449 (480)
                      .   ++.++....+.+.+.......+....  .. ....+++........   ........++..|+ +.||++.|+..+
T Consensus       252 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~Ll~~~gV~~ip~~~~  328 (366)
T d2aeua1         252 RKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDT---INIKKLIEIGFNLLKNYGIITITVAGM  328 (366)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHH---HHHHHHHHHHHHHHHHHCEECSTTSSS
T ss_pred             HHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCccee---ecccCHHHHHHHHHHhCCEEEEECCCC
Confidence            2   22333333344444443332222211  11 112222322221100   00112334555554 569998876332


Q ss_pred             ---CCEEEEeCCCCCCHH-HHHHHHHHHHHHH
Q 011669          450 ---GNVFRITPPLCFTKE-DADYLVDVMDYSL  477 (480)
Q Consensus       450 ---~~~iRi~p~~~~t~~-~id~~l~~l~~~l  477 (480)
                         .+++||+.....+++ +.|.+++++.+.+
T Consensus       329 p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~l  360 (366)
T d2aeua1         329 PGASKSLRIDLTSRDAERIDDNYIIKAIVESI  360 (366)
T ss_dssp             CSSCCSEEEETTSGGGGGSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeccccchhhCCHHHHHHHHHHHH
Confidence               358999965322211 2344444444443

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.74  E-value=6.5e-17  Score=163.81  Aligned_cols=350  Identities=14%  Similarity=0.061  Sum_probs=193.6

Q ss_pred             CEEEeccCCcccccCCCCCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Q 011669           99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA  178 (480)
Q Consensus        99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~a  178 (480)
                      ..+||+.+-.++.       ...+++..++..+.-  ...-++...+|.+++++++  +.+.++|++||+.||..+++..
T Consensus        42 ~v~iDl~sDs~t~-------am~~~~~aa~~~GDd--~Y~~dpt~~~lE~~~a~l~--G~e~al~~~SGt~An~~a~~~l  110 (456)
T d1c7ga_          42 DIYIDLLTDSGTN-------AMSDKQWAGMMIGDE--AYAGSENFYHLEKTVKELF--GFKHIVPTHQGRGAENLLSQLA  110 (456)
T ss_dssp             GCSEECSCSSSCC-------CEEHHHHHHTTSCCC--CSSSCHHHHHHHHHHHHHH--CCSEEEEESSHHHHHHHHHHHH
T ss_pred             ceeeEcccCCCcc-------cchHHHHHHHhccch--hccCCchHHHHHHHHHHHh--CCCeEEECCCHHHHHHHHHHHh
Confidence            4578987765542       122333333322211  1223788999999999999  4578999999999999999865


Q ss_pred             HhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEE
Q 011669          179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF  258 (480)
Q Consensus       179 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~v  258 (480)
                      .   ++.++|+....|+..........+.+.....   ........++++++.  .|    .++|++.|+...++.++.+
T Consensus       111 ~---~~Gd~Vi~~~~f~~~~~~i~~~g~~~~~~~~---~~~~~~~~~~~~~~~--~d----~~~le~~I~~~~~~~~~~i  178 (456)
T d1c7ga_         111 I---KPGQYVAGNMYFTTTRFHQEKNGATFVDIVR---DEAHDASLNLPFKGD--ID----LNKLATLIKEKGAENIAYI  178 (456)
T ss_dssp             C---CTTEEEEESSCCHHHHHHHHHTTEEEEECBC---GGGGCTTCCCSCTTC--BC----HHHHHHHHHHHCGGGEEEE
T ss_pred             c---CCCCeEecCcchHHHHHHHHHcCceeeeccc---cccccccccCCcccc--CC----HHHHHHHhhhcCCccceeE
Confidence            3   3344444444444332221111111000000   000000011122222  23    6789999987656688999


Q ss_pred             EEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccc------cCCCcccccc------cCCCcceeeec--c
Q 011669          259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR------TGSHFWGFEA------HGVVPDIVTMA--K  324 (480)
Q Consensus       259 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr------~G~~~~~~~~------~~~~pDivt~s--K  324 (480)
                      ++|..++.+|..+.+.+.+++|+++|++||+.+|.|+++. ++.      ....+.....      ..-..|++++|  |
T Consensus       179 ~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~-~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K  257 (456)
T d1c7ga_         179 CLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC-VENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKK  257 (456)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH-HHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTT
T ss_pred             EeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchh-hcchhhhcccccccCCCChhhhccccccccccEEEeccc
Confidence            9998888877777899999999999999999999999975 210      0000100000      01135777655  6


Q ss_pred             ccccCccc-cccccC-HHHHHhhcCC----CccccCCCc-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHh
Q 011669          325 GIGNGIPL-GAVVTT-PEIAEVLTRR----NYFNTFGGN-PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK  397 (480)
Q Consensus       325 ~~g~G~pi-g~v~~~-~~~~~~l~~~----~~~~t~~~~-~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~  397 (480)
                      .+++  +. |+++++ +++++.++..    ....++++. ...+.+....+....+++..++..+..++|.++|.+.  .
T Consensus       258 ~~~~--~~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~--g  333 (456)
T d1c7ga_         258 DCLV--NIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA--G  333 (456)
T ss_dssp             TTCC--SSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred             cccc--cceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--c
Confidence            6653  33 455555 4566554431    122334333 3333333333444444556666666778888888776  2


Q ss_pred             cCceeeEeccceeEEEEEecCC--CcCCCCHHHHHHHHHHHHHcCceeeccCc---------------CCCEEEEeCC-C
Q 011669          398 YGIIGDVRGRGFLLGVEFVTDR--QLKTPAKAETLYIMDKMKEMGVLVGKGGF---------------YGNVFRITPP-L  459 (480)
Q Consensus       398 ~~~~~~v~g~g~~~~i~~~~~~--~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------~~~~iRi~p~-~  459 (480)
                      .+.+.  +..+..+.++.....  ....... ....+.+.+.+.||...+.+.               ..+.+||+.| .
T Consensus       334 ~~vv~--p~g~~~v~vda~~~~~~i~~~~~~-~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~  410 (456)
T d1c7ga_         334 VPIVE--PTGGHAVFLDARRFCPHLTQDQFP-AQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRR  410 (456)
T ss_dssp             CCBCS--SCCSSEEEEEHHHHCTTSCGGGCH-HHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTT
T ss_pred             CCccc--CCCCcceeEechhhccCCCccccc-HHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcc
Confidence            33222  223333334322110  0001111 122334445677886543211               1246999987 5


Q ss_pred             CCCHHHHHHHHHHHHHHHhh
Q 011669          460 CFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       460 ~~t~~~id~~l~~l~~~l~~  479 (480)
                      ..|+++||.++++|++++++
T Consensus       411 ~~T~e~iD~Vae~i~~v~~~  430 (456)
T d1c7ga_         411 VYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             SCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHHhh
Confidence            66999999999999998753

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.3e-16  Score=158.03  Aligned_cols=293  Identities=12%  Similarity=0.094  Sum_probs=178.7

Q ss_pred             HHHHHHHHHhC----CCCCCEEEEeCCHHHHHHHHHHHHH-hhcCCceEEEEcCCcccccccccccccCCCccccccCCC
Q 011669          144 ADFAEALASKM----PGNLKVVFFTNSGTEANELAIMMAR-LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG  218 (480)
Q Consensus       144 ~~l~e~L~~~~----~~~~~~v~f~~sGseA~~~Alk~ar-~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g  218 (480)
                      .+..+.+.+.+    +.+.+.++|+.|||+|++++++... ...+++++++...++++...........         ..
T Consensus        39 ~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~---------~~  109 (382)
T d2bkwa1          39 QRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYG---------AQ  109 (382)
T ss_dssp             HHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTT---------CE
T ss_pred             HHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccc---------cc
Confidence            34445555554    3456789999999999999998653 3346788999988888765433322110         01


Q ss_pred             eeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhC--CEEEEccc
Q 011669          219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG--GLCIADEV  296 (480)
Q Consensus       219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g--illI~DEv  296 (480)
                      +..+. +.+....  .+    .+++++.+..   .+++.+++..+.+++|...+    ++++.++|++++  +++++|.+
T Consensus       110 ~~~~~-~~~~~~~--~~----~~~~~~~~~~---~~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~  175 (382)
T d2bkwa1         110 VDVVR-PLKIGES--VP----LELITEKLSQ---NSYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAV  175 (382)
T ss_dssp             EEEEC-CSSTTSC--CC----HHHHHHHHHH---SCCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECT
T ss_pred             ccccc-ccCCCCc--cc----hhHHHHHhhh---ccchheeeeecccccccccc----chhhhhhccccccceeeeeecc
Confidence            11111 1111111  12    3556655553   35678888888888998888    999999998875  99999999


Q ss_pred             ccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCCC-------------------------
Q 011669          297 QAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN-------------------------  349 (480)
Q Consensus       297 ~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~~-------------------------  349 (480)
                      |+ +|..   .  ++......|++++|  |++++...+|+++.+++..+.+....                         
T Consensus       176 qs-~g~~---p--id~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (382)
T d2bkwa1         176 CS-IGCE---E--FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAG  249 (382)
T ss_dssp             TT-TTTS---C--CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTT
T ss_pred             cc-cccc---c--ccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhccccc
Confidence            97 5422   2  33334457888776  99977667899999999876654310                         


Q ss_pred             ccccC-CCcHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHhHHhcCce---eeEeccceeEEEEEecCCCcC
Q 011669          350 YFNTF-GGNPVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLKERLTALKDKYGII---GDVRGRGFLLGVEFVTDRQLK  422 (480)
Q Consensus       350 ~~~t~-~~~~~~~aaa~a~L~~i~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~---~~v~g~g~~~~i~~~~~~~~~  422 (480)
                      ...+. ..+....++..++|+.+.++..   .++.+++.+++++++.+........   ...+. ..+..+..       
T Consensus       250 ~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s-~~v~~~~~-------  321 (382)
T d2bkwa1         250 KGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSA-HGLTAVYV-------  321 (382)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBC-SSCEEEEC-------
T ss_pred             ccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccC-CcEEEEcC-------
Confidence            01222 3445566777788888866543   3444555666666665432111100   11111 12233333       


Q ss_pred             CCCHHHHHHHHHHHHHcCceeeccC---cCCCEEEEe-CCCCCCHHHHHHHHHHHHHHH
Q 011669          423 TPAKAETLYIMDKMKEMGVLVGKGG---FYGNVFRIT-PPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       423 ~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~iRi~-p~~~~t~~~id~~l~~l~~~l  477 (480)
                       |+   ...+.+.|.++||.+..|.   ..++++||+ ..+..++++++.+++.|+.+.
T Consensus       322 -~~---~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~  376 (382)
T d2bkwa1         322 -AD---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK  376 (382)
T ss_dssp             -SC---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred             -CC---HHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence             22   2457778889999998763   234789998 456667777776666665443

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.74  E-value=1.1e-16  Score=158.93  Aligned_cols=320  Identities=15%  Similarity=0.135  Sum_probs=187.2

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y  194 (480)
                      .+|+|++|+.+..  ..|... -..+.+.+.++.|++.++.+ .+.++|+.|||+|+++++..+..  +++++++...+.
T Consensus        28 ~~~~V~~Am~~~~--~~hr~~-ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~--~~~~vl~~~~g~  102 (388)
T d2ch1a1          28 CSKRVLTAMTNTV--LSNFHA-ELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE--EGDRVLIAVNGI  102 (388)
T ss_dssp             CCHHHHHHTTSCC--CCTTCH-HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSH
T ss_pred             CCHHHHHHhCcCC--CCCCCH-HHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcc--cccccccccccc
Confidence            3688888764321  223221 22456778888888888653 45677888999999999987643  566777776666


Q ss_pred             ccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCC
Q 011669          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (480)
Q Consensus       195 hG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  274 (480)
                      ++...........         .....+..++.  ..  .+    .+..+..+..   .+++.+.+..+.+.+|.+.+  
T Consensus       103 ~~~~~~~~~~~~~---------~~~~~~~~~~~--~~--~~----~~~~~~~~~~---~~~~~v~~~~~~t~tG~~~~--  160 (388)
T d2ch1a1         103 WAERAVEMSERYG---------ADVRTIEGPPD--RP--FS----LETLARAIEL---HQPKCLFLTHGDSSSGLLQP--  160 (388)
T ss_dssp             HHHHHHHHHHHTT---------CEEEEEECCTT--SC--CC----HHHHHHHHHH---HCCSEEEEESEETTTTEECC--
T ss_pred             ccccchhhhhhhc---------ccccccccccc--cc--cc----hhhhhhhhcc---CCcceeeeeecccccccccc--
Confidence            6544333222110         01112222211  11  12    2334334332   25677888888888898887  


Q ss_pred             ChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCCC---
Q 011669          275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN---  349 (480)
Q Consensus       275 ~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~~---  349 (480)
                        ++++.++|+++|+++++|.+|+ +|..   .  ++..+...|++++|  |++++.-.+|.++.+++..+......   
T Consensus       161 --~~~i~~~~~~~~~~~~vD~~ss-~g~~---p--id~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~  232 (388)
T d2ch1a1         161 --LEGVGQICHQHDCLLIVDAVAS-LCGV---P--FYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKS  232 (388)
T ss_dssp             --CTTHHHHHHHTTCEEEEECTTT-BTTB---C--CCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCC
T ss_pred             --hhhhcchhccccceeeeeeeec-cccc---c--cchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCcc
Confidence              7889999999999999999997 4322   2  33445567888777  66665456788888887766443210   


Q ss_pred             -------------------cccc-CCCcHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHhHHhcCceeeEec
Q 011669          350 -------------------YFNT-FGGNPVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTALKDKYGIIGDVRG  406 (480)
Q Consensus       350 -------------------~~~t-~~~~~~~~aaa~a~L~~i~~~~~~---~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  406 (480)
                                         ...+ +..+.....+..++++.+..+...   .+.+....+.+..+..... ...+.+...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  311 (388)
T d2ch1a1         233 KVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGL-DIFVKDPRH  311 (388)
T ss_dssp             SCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTC-CBSSCSGGG
T ss_pred             ccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhccc-ccccCCHHH
Confidence                               0112 223345555566666665544332   2222233333333333210 111222111


Q ss_pred             c-ceeEEEEEecCCCcCCCCHHHHHHHHHHHHH-cCceeeccCc--CCCEEEEe-CCCCCCHHHHHHHHHHHHHHHhh
Q 011669          407 R-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKE-MGVLVGKGGF--YGNVFRIT-PPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       407 ~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~--~~~~iRi~-p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      + ..+..+.+.+        .....++...|++ .||.+.+|..  .++.|||+ .....|+|||+.++++|+++|+.
T Consensus       312 rs~~v~~~~~p~--------g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~  381 (388)
T d2ch1a1         312 RLPTVTGIMIPK--------GVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA  381 (388)
T ss_dssp             BCTTEEEEECCT--------TCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             hCCeEEEEECCC--------CCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence            1 2234454422        1224567777765 5999887632  35689999 45667899999999999999975

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.73  E-value=1.6e-16  Score=156.84  Aligned_cols=317  Identities=18%  Similarity=0.145  Sum_probs=186.3

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY  194 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~y  194 (480)
                      .+|+|++||...  ...|... ...+...+.++.|+++++.+ ...|+|+.|||++++.++.....  .+++++....++
T Consensus        29 v~~~Vl~am~~~--~~~hr~~-ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~--~~~~~~~~~~~~  103 (377)
T d1vjoa_          29 AHPSVLQAMNVS--PVGHLDP-AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVE--PGDVVLIGVAGY  103 (377)
T ss_dssp             CCHHHHHHHSSC--CCCTTSH-HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSH
T ss_pred             CCHHHHHHhCcC--CCCCCCH-HHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccc--cccccceeeech
Confidence            468888876431  1233322 22466788889999988643 35788889999999999976543  567777777777


Q ss_pred             ccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCC
Q 011669          195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP  274 (480)
Q Consensus       195 hG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  274 (480)
                      ++............         .......+.  ...  .+    .+..+.....   .++..+.+..+.+.+|.+.+  
T Consensus       104 ~~~~~~~~~~~~~~---------~~~~~~~~~--~~~--~~----~~~~~~~~~~---~~~~~v~~~~~~~~tg~~~~--  161 (377)
T d1vjoa_         104 FGNRLVDMAGRYGA---------DVRTISKPW--GEV--FS----LEELRTALET---HRPAILALVHAETSTGARQP--  161 (377)
T ss_dssp             HHHHHHHHHHHTTC---------EEEEEECCT--TCC--CC----HHHHHHHHHH---HCCSEEEEESEETTTTEECC--
T ss_pred             hhhhhhhhhhhhcc---------cccccccCC--CCc--cc----chhhhhhhhc---Ccceeeeeeeeeccceeeec--
Confidence            65543333222111         111111111  111  11    1223222221   25667777788888999988  


Q ss_pred             ChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCCCc--
Q 011669          275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNY--  350 (480)
Q Consensus       275 ~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~~~--  350 (480)
                        ++++.++|+++|+++++|.+|+ +|...     ++.....+|++++|  |+++++-.+|.++.+++.++.......  
T Consensus       162 --i~~i~~~~~~~g~~~~vDa~~~-~g~~~-----~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~  233 (377)
T d1vjoa_         162 --LEGVGELCREFGTLLLVDTVTS-LGGVP-----IFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKV  233 (377)
T ss_dssp             --CTTHHHHHHHHTCEEEEECTTT-TTTSC-----CCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCC
T ss_pred             --hhhhhhhhhhccceEEEecchh-hhhhh-----hcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCC
Confidence              8999999999999999999996 54322     33334456777665  666665667788888887765443211  


Q ss_pred             -----------------cccCCCc-HHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceee--Eecc
Q 011669          351 -----------------FNTFGGN-PVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGD--VRGR  407 (480)
Q Consensus       351 -----------------~~t~~~~-~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--v~g~  407 (480)
                                       ..+.... ...+.+..+++..+.+   +...++.++...++++.+.+..  +..+..  .+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~rs~  311 (377)
T d1vjoa_         234 ANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIG--LSLHVEKEYRLP  311 (377)
T ss_dssp             SCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBSSCGGGBCS
T ss_pred             cceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccC--ceeecChHhcCC
Confidence                             0111222 2233333344443333   3344555555666666665532  122211  1222


Q ss_pred             ceeEEEEEecCCCcCCCCHHHHHHHHHHHH-HcCceeeccCc--CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHh
Q 011669          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-EMGVLVGKGGF--YGNVFRITP-PLCFTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~--~~~~iRi~p-~~~~t~~~id~~l~~l~~~l~  478 (480)
                       .++.+.+.+        ......+.+.|+ +.||.+..|..  .++.|||++ .+..|+||||+++++|+++++
T Consensus       312 -~v~~~~~p~--------~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         312 -TLTTVCIPD--------GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             -SEEEEECCT--------TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             -eEEEEECCC--------CCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence             233344321        112456777765 55999876522  357899995 567789999999999999885

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=3.8e-16  Score=152.75  Aligned_cols=316  Identities=19%  Similarity=0.194  Sum_probs=193.9

Q ss_pred             CCHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcc
Q 011669          116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH  195 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yh  195 (480)
                      -+|+|.+|+.++.  ..|... .......+..+.|.+.+..+.+.++|+.|||+|+++++.....  ++++++++..++.
T Consensus        11 v~~~V~~am~~~~--~~hr~~-~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~--~g~~vlv~~~G~f   85 (348)
T d1iuga_          11 LHPKALEALARPQ--LHHRTE-AAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA--PGERVLVPVYGKF   85 (348)
T ss_dssp             CCHHHHHHHHSCC--CCTTSH-HHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC--TTCEEEEEECSHH
T ss_pred             CCHHHHHHhcCCC--CCCCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhccc--ccccceeecchHH
Confidence            3689999876532  233322 2235667888888888877778899999999999999986543  5678888888876


Q ss_pred             cccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCC
Q 011669          196 GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPG  275 (480)
Q Consensus       196 G~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~  275 (480)
                      |...........         ..+.....+  +...+.         +++ +.   ..++..|++.....++|.+.+   
T Consensus        86 ~~~~~~~a~~~~---------~~~~~~~~~--~g~~~~---------~~~-~~---~~~~~~v~~~h~eTstG~~~~---  138 (348)
T d1iuga_          86 SERFYEIALEAG---------LVVERLDYP--YGDTPR---------PED-VA---KEGYAGLLLVHSETSTGALAD---  138 (348)
T ss_dssp             HHHHHHHHHHTT---------CEEEEEECC--TTCCCC---------TTT-SC---CSSCSEEEEESEETTTTEECC---
T ss_pred             HHHHHHHHHhcC---------ccccccccc--CCCccc---------ccc-cc---ccCCCeeEEEecchhhhhhcc---
Confidence            654332221110         011111111  111110         011 11   235566777777777888888   


Q ss_pred             hHHHHHHHHHHhC--CEEEEcccccCccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHHHhhcCCCc-
Q 011669          276 YLPAVYKSIKKAG--GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNY-  350 (480)
Q Consensus       276 ~l~~l~~l~~~~g--illI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~~~l~~~~~-  350 (480)
                       +++|.++|++|+  +++++|-+++ +|-.   ...++.++  .|++++|  |++++--.+|.++.+++.++.+.+... 
T Consensus       139 -i~~i~~~~~~~~~~~l~~vDavss-~g~~---~i~~d~~~--iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~  211 (348)
T d1iuga_         139 -LPALARAFKEKNPEGLVGADMVTS-LLVG---EVALEAMG--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYY  211 (348)
T ss_dssp             -HHHHHHHHHHHCTTCEEEEECTTT-BTTB---CCCSGGGT--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSST
T ss_pred             -HHHHHHHHHhhhccceeechhhhc-cccc---cccccccc--CCEEEeccccceecCCceeeeeechHHHhhhcccccc
Confidence             999999999985  8999999997 5422   22234444  6777655  999754456899999999887765321 


Q ss_pred             ------------cccCCCc-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec-cceeEEEEEe
Q 011669          351 ------------FNTFGGN-PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFV  416 (480)
Q Consensus       351 ------------~~t~~~~-~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~  416 (480)
                                  +.+.+.+ .....+..++|+.+.++ ..++. +..+...+.++.+.+..++...... ...+..+.+ 
T Consensus       212 ~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~-  288 (348)
T d1iuga_         212 LDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHL-ALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYL-  288 (348)
T ss_dssp             TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHH-HHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEEC-
T ss_pred             cchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEEC-
Confidence                        1233333 44555666788876544 33333 2333333444444433332211111 112334444 


Q ss_pred             cCCCcCCCCHHHHHHHHHHHHHcCceeeccC--cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          417 TDRQLKTPAKAETLYIMDKMKEMGVLVGKGG--FYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                             |+......+.+.|.++|+.+.+|-  ..+..+||+..-..+.+|++.++++|+++|+++
T Consensus       289 -------P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         289 -------PEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             -------CTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                   222235678888999999987762  224689998665789999999999999999864

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.73  E-value=3.5e-16  Score=157.80  Aligned_cols=297  Identities=16%  Similarity=0.035  Sum_probs=179.3

Q ss_pred             HHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEec-
Q 011669          145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHAL-  223 (480)
Q Consensus       145 ~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~-  223 (480)
                      ++...+++.++.+........++++++++++...|...+++.||+.+ .-|.....++...+...          ..+. 
T Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~-~~H~s~~k~~~~~g~~~----------~~v~~  185 (434)
T d2z67a1         117 KILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPY-ASHKSPIKAVSFVGMNM----------RLVET  185 (434)
T ss_dssp             HHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEEC-CCCHHHHHHHHHTTCEE----------EEECC
T ss_pred             HHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEec-cCCHHHHHHHHHhCCcc----------eEEEe
Confidence            34455667776554444444556666666776666665666666654 44655544444433211          1111 


Q ss_pred             CCCCcCCCCCCChHHHHHHHHHHHHcc-CCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccc
Q 011669          224 NPDPYRGVFGADGEMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR  302 (480)
Q Consensus       224 ~p~~~~~~~~~d~~~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr  302 (480)
                      .++.  ..+..|    +++|++.|++. ..+.+++|+++..+..+|.+.+    +++|.++|++||+++|+|++|.++..
T Consensus       186 ~~~~--~~~~~d----~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~  255 (434)
T d2z67a1         186 VLDG--DRVYVP----VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNN  255 (434)
T ss_dssp             EEET--TEEECC----HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH
T ss_pred             ecCC--CccCCC----HHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhh
Confidence            0111  011124    67888888642 1346788888888778888766    99999999999999999999964321


Q ss_pred             -cCCCcccccccCCCcceeeec--cccccCccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhHHHH
Q 011669          303 -TGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN  378 (480)
Q Consensus       303 -~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~  378 (480)
                       .+ +. .........|+++++  |.++++...|++..+ +++++.+.....+.+...+...+.+++..+.....+++.+
T Consensus       256 ~~~-~~-~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~  333 (434)
T d2z67a1         256 YYL-EK-LKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVK  333 (434)
T ss_dssp             HHH-HH-HHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcc-cc-ccccccCCcceEEEcCccccccCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHH
Confidence             11 00 011123456887765  999876666777655 5677777665444444444444444444443323345677


Q ss_pred             HHHHHHHHHHHHHHHhHHhcCce-eeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc-----------
Q 011669          379 NAHVVGSYLKERLTALKDKYGII-GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG-----------  446 (480)
Q Consensus       379 ~~~~~~~~l~~~L~~l~~~~~~~-~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----------  446 (480)
                      +..++.++++++|+++...++.. ...+ ......+.+..       +   ...+...|.++||.....           
T Consensus       334 ~~~~~a~~l~~~L~~l~~~~g~~ll~~~-~~~~~~~~~~~-------~---~~~l~~~L~~~gI~g~~v~~~l~~~g~~~  402 (434)
T d2z67a1         334 NQKNSKKLLDELLNDLSKKTGGKFLDVE-SPIASCISVNS-------D---PVEIAAKLYNLRVTGPRGIKKTDHFGNCY  402 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCBCCCC-CSSEEEEECSS-------C---HHHHHHHHHHTTEESCEEECTTCHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhhhhcCceecCCC-CCceeeeecCC-------C---HHHHHHHHHHcCCeeeehhhhccccCeee
Confidence            77888899999999987655321 1111 11112222211       1   345777889999854211           


Q ss_pred             --CcCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 011669          447 --GFYGNVFRITPPLCFTKEDADYLVDVMDY  475 (480)
Q Consensus       447 --~~~~~~iRi~p~~~~t~~~id~~l~~l~~  475 (480)
                        ....+.+|++.+...|++|||.++++|++
T Consensus       403 ~~~~~~~~l~~~~s~~~T~edID~~i~~L~k  433 (434)
T d2z67a1         403 LGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK  433 (434)
T ss_dssp             SSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             ecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence              11246899999999999999999999986

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=9.3e-16  Score=155.13  Aligned_cols=311  Identities=9%  Similarity=-0.037  Sum_probs=184.1

Q ss_pred             HHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHH-hhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeE
Q 011669          144 ADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMAR-LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHH  221 (480)
Q Consensus       144 ~~l~e~L~~~~~~~-~~~v~f~~sGseA~~~Alk~ar-~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~  221 (480)
                      .++.+.++++++.+ ....+++++||+++..++.+++ ....+.++|+....-|.....++...+...          ..
T Consensus        97 ~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~----------~~  166 (445)
T d3bc8a1          97 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEP----------VV  166 (445)
T ss_dssp             HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEE----------EE
T ss_pred             HHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCee----------EE
Confidence            34666677766533 3467889999887776665544 333333444444555776666655544221          11


Q ss_pred             ec-CCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCc
Q 011669          222 AL-NPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF  300 (480)
Q Consensus       222 ~~-~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgf  300 (480)
                      +. .++.  ..+.-|    .++|+++|+....+++++|++...++..|.+.+    +++|.++|++||+++|+|+++.++
T Consensus       167 v~~~~~~--~~~~id----~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~  236 (445)
T d3bc8a1         167 IENVLEG--DELRTD----LKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQ  236 (445)
T ss_dssp             ECCEEET--TEEECC----HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTT
T ss_pred             EEeeccC--cccccC----HHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhh
Confidence            11 0111  011123    678888887654557889999888888888876    999999999999999999999743


Q ss_pred             ccc-CC-CcccccccCCCcceeeec--cccccCccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHHHhhhhH
Q 011669          301 ART-GS-HFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK  375 (480)
Q Consensus       301 gr~-G~-~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~~i~~~~  375 (480)
                      ... .. ..+.....  ..|+++++  |.++++...|+++.+ +++.+.+.....+...+...+.+.+.+..+..-.-..
T Consensus       237 ~~~~~~~~~~~~~~~--~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  314 (445)
T d3bc8a1         237 SSKCMHLIQQGARVG--RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRK  314 (445)
T ss_dssp             CHHHHHHHHHHHHHS--CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccchhccCcC--CcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchh
Confidence            110 00 01111111  35676655  988877667777765 4555555432222222222333333333332212234


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhcCc-eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeecc--------
Q 011669          376 LQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKG--------  446 (480)
Q Consensus       376 ~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--------  446 (480)
                      ..++..++.+++++.|.++...++. +..........++.+......   .......+...|.+.||-....        
T Consensus       315 ~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~  391 (445)
T d3bc8a1         315 LLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH---HDKAVTQLGSMLFTRQVSGARAVPLGNVQT  391 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSS---SSCHHHHHHHHHHHTTCCSCEEECSCCEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeecccc---CCCCHHHHHHHHHHcCCCcceeeccccccc
Confidence            5566677788899999988766642 233444444455554332211   1123455677788888732110        


Q ss_pred             ---------C-----cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          447 ---------G-----FYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       447 ---------~-----~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                               +     .....+|+.++..+|++|||.++++|++++++
T Consensus       392 i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~  438 (445)
T d3bc8a1         392 VSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI  438 (445)
T ss_dssp             ETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHH
Confidence                     0     11246899999999999999999999999875

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=9.5e-13  Score=132.47  Aligned_cols=331  Identities=16%  Similarity=0.043  Sum_probs=191.4

Q ss_pred             CCCHHHHHHHHHHHHhccccccccC--ChHHHHHHHHHHHhCCCCC-----CEEEEeCCHHHHHHHHHHHHHhhc-----
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNL-----KVVFFTNSGTEANELAIMMARLYT-----  182 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~~~~--~~~~~~l~e~L~~~~~~~~-----~~v~f~~sGseA~~~Alk~ar~~~-----  182 (480)
                      +-+|++.+.+.+.+.+-......|+  .+...++...|+++++.+.     ..-.+|+||||||..|+..+|..-     
T Consensus        65 ~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~  144 (450)
T d1pmma_          65 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME  144 (450)
T ss_dssp             CCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhh
Confidence            4578998888876665322122232  2344567778888875321     124799999999999999887531     


Q ss_pred             -----CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEE
Q 011669          183 -----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG  257 (480)
Q Consensus       183 -----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~  257 (480)
                           ....+++. ...|....-+....            |+....+|... ..+.-|    .++|+++++    +++++
T Consensus       145 ~~g~~~~~~~~~~-~~~H~s~~Kaa~~~------------gi~~~~v~~~~-~~~~~d----~~~L~~~i~----~~t~~  202 (450)
T d1pmma_         145 AAGKPTDKPNLVC-GPVQICWHKFARYW------------DVELREIPMRP-GQLFMD----PKRMIEACD----ENTIG  202 (450)
T ss_dssp             HHTCCCSCCEEEE-SSCCHHHHHHHHHT------------TCEEEECCCBT-TBCSCC----HHHHHHHCC----TTEEE
T ss_pred             hcCCCCCCceEEe-cccHHHHHHHHHHc------------CCCceEeeecC-CCCcCc----HHHHHHHhh----hCceE
Confidence                 12234443 44565444333332            23222222111 112223    677888775    47888


Q ss_pred             EEEcccCCCCcceeCCCChHHHHHHHH------HHhCCEEEEcccccCccc--cCC-CcccccccCC-Ccceeeec--cc
Q 011669          258 FLSESIQGVGGIIELAPGYLPAVYKSI------KKAGGLCIADEVQAGFAR--TGS-HFWGFEAHGV-VPDIVTMA--KG  325 (480)
Q Consensus       258 vi~epi~~~~G~~~~~~~~l~~l~~l~------~~~gillI~DEv~tgfgr--~G~-~~~~~~~~~~-~pDivt~s--K~  325 (480)
                      |++.-..+.+|.+.+    +++|.++|      +++|+++++|.+|.|+--  .-. ..|.   .++ ..|.++++  |.
T Consensus       203 Vv~t~gtt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~---~~~~~aDSi~~s~HK~  275 (450)
T d1pmma_         203 VVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD---FRLPRVKSISASGHKF  275 (450)
T ss_dssp             EECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS---TTSTTEEEEEEETTTT
T ss_pred             EEeeeeeccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhh---hcccceeEeecChhhc
Confidence            888877788888877    77777765      568999999999987521  110 1111   122 36788877  87


Q ss_pred             cccCccccccccCHHHH-H-hhcCC-----Ccc--ccC--CCcHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Q 011669          326 IGNGIPLGAVVTTPEIA-E-VLTRR-----NYF--NTF--GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL  391 (480)
Q Consensus       326 ~g~G~pig~v~~~~~~~-~-~l~~~-----~~~--~t~--~~~~~~~aaa~a~L~~i~~~---~~~~~~~~~~~~l~~~L  391 (480)
                      +.+.+.+|+++.+.+-. . .+...     ...  .+.  +.+.....+..+++..+..+   +..++..++.+++.++|
T Consensus       276 ~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L  355 (450)
T d1pmma_         276 GLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEI  355 (450)
T ss_dssp             TCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778889999875422 1 11100     000  122  22333444455566655444   34556666677777776


Q ss_pred             HHhHHhcCceeeEec-cc-eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeec----c-CcCCCEEEEeCCCCCCHH
Q 011669          392 TALKDKYGIIGDVRG-RG-FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGK----G-GFYGNVFRITPPLCFTKE  464 (480)
Q Consensus       392 ~~l~~~~~~~~~v~g-~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~-~~~~~~iRi~p~~~~t~~  464 (480)
                      ++.. .+.++..... .+ ..+.+.+......    ......+.+.|.++|..+..    . ......+|+.+.-.+|++
T Consensus       356 ~~~~-~~el~~~~~p~~~l~~V~Fr~~~~~~~----~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e  430 (450)
T d1pmma_         356 AKLG-PYEFICTGRPDEGIPAVCFKLKDGEDP----GYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMD  430 (450)
T ss_dssp             HTTS-CEEEEEECCTTTBSSEEEEEECTTCCC----SSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHH
T ss_pred             HhCC-CeEEEeCCCCCCceEEEEEecCCcccC----CCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHH
Confidence            6641 1112211111 11 2344555432211    11245688899999977632    1 112347899988889999


Q ss_pred             HHHHHHHHHHHHHhh
Q 011669          465 DADYLVDVMDYSLSK  479 (480)
Q Consensus       465 ~id~~l~~l~~~l~~  479 (480)
                      ++|++++.|++++++
T Consensus       431 ~~d~lv~dl~~~v~~  445 (450)
T d1pmma_         431 FAELLLEDYKASLKY  445 (450)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998865

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.53  E-value=1.1e-12  Score=132.74  Aligned_cols=317  Identities=11%  Similarity=0.018  Sum_probs=167.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccc-cccccccC-CCcccc-ccC
Q 011669          140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA-GTMGATAQ-SNWKFN-VVQ  216 (480)
Q Consensus       140 ~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~-~~~~~~~~-~~~~~~-~~~  216 (480)
                      ...+.++.+.+++.++  .++++|+++||+++..|+..+.. .+++.||+.+.+ |.... ....+.+. ..+... ...
T Consensus        65 ~~~i~eae~~~A~~~g--a~~a~f~~~Gtt~~n~a~i~a~~-~~gd~Vi~~~~~-H~Sv~~~~~~l~~~~~~~~~~~~~~  140 (462)
T d1c4ka2          65 EGPAVAAEKHAARVYN--ADKTYFVLGGSSNANNTVTSALV-SNGDLVLFDRNN-HKSVYNSALAMAGGRPVYLQTNRNP  140 (462)
T ss_dssp             BTHHHHHHHHHHHHTT--CSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEETTC-CHHHHHHHTTTTCCEEEEECEEECT
T ss_pred             CHHHHHHHHHHHHHhC--CCeEEEECCchHHHHHHHHHHhc-CCCCeEEecccc-hHHHHHHHHHHhcCCceeeeccccc
Confidence            4577889999999995  47889999998887777654432 356666666555 44443 23333221 111111 111


Q ss_pred             CCeeEecCCCCcCCCCCCChHHHHHHHHHHHH-----ccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEE
Q 011669          217 TGVHHALNPDPYRGVFGADGEMYAKDVQDLID-----FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (480)
Q Consensus       217 ~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~-----~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  291 (480)
                      .+......+..      .+    .+.+++.+.     .....++..+++...++..|.+.+    +++|.++|++||+++
T Consensus       141 ~g~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l  206 (462)
T d1c4ka2         141 YGFIGGIYDSD------FD----EKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYI  206 (462)
T ss_dssp             TCCEEEECGGG------SC----HHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEE
T ss_pred             ccccCCCChHH------hh----HHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEE
Confidence            12111111100      01    122222221     111234555666677778898888    999999999999999


Q ss_pred             EEcccccCccccCCCcccc--cc----c--CCCcceeeec--cccccCccccccc-cCHHHHHhh---------cCC-Cc
Q 011669          292 IADEVQAGFARTGSHFWGF--EA----H--GVVPDIVTMA--KGIGNGIPLGAVV-TTPEIAEVL---------TRR-NY  350 (480)
Q Consensus       292 I~DEv~tgfgr~G~~~~~~--~~----~--~~~pDivt~s--K~~g~G~pig~v~-~~~~~~~~l---------~~~-~~  350 (480)
                      ++||+|..-.... .....  ..    .  ....|++++|  |.+++.- .|.++ .+.+.+...         ... ..
T Consensus       207 ~vD~A~~~~~~~~-~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~-~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~  284 (462)
T d1c4ka2         207 EFDSAWVGYEQFI-PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFNNSFNL  284 (462)
T ss_dssp             EEECTTCCGGGSS-GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT-TCEEEEEECGGGTTSTTCCCHHHHHHHHHH
T ss_pred             EEechhhcccccc-CcCCcchhhccccccccCCccEEEEecCccccccc-ceEEEEeccccccccchhhhHHHHHHhhhh
Confidence            9999986321111 11110  01    1  1134777654  9887421 23333 333222111         000 01


Q ss_pred             cccCCCcHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCc-e-eeEe--------------------
Q 011669          351 FNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGI-I-GDVR--------------------  405 (480)
Q Consensus       351 ~~t~~~~~~~~aaa~a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~-~-~~v~--------------------  405 (480)
                      ..|.+++...++...++...+..   +++.++..++..++++++.++...+.. . ..+.                    
T Consensus       285 ~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  364 (462)
T d1c4ka2         285 FMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWR  364 (462)
T ss_dssp             HSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGB
T ss_pred             cccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhc
Confidence            23444454444444444554433   355667777888888888876422100 0 0000                    


Q ss_pred             --------------cccee-----EEEEEec---CCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCH
Q 011669          406 --------------GRGFL-----LGVEFVT---DRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTK  463 (480)
Q Consensus       406 --------------g~g~~-----~~i~~~~---~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~  463 (480)
                                    ....+     +.+....   ..............+.+.|.++||.+-..+  .+.+|+..+..+|+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~--~~~i~~~~s~~~T~  442 (462)
T d1c4ka2         365 FEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD--LNSILFLMTPAETP  442 (462)
T ss_dssp             CCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEEC--SSEEEEECCTTCCH
T ss_pred             cCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccC--CCeEEEEecCCCCH
Confidence                          00000     1111100   000000000114567778889999775433  56899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 011669          464 EDADYLVDVMDYSLS  478 (480)
Q Consensus       464 ~~id~~l~~l~~~l~  478 (480)
                      +|+|.++++|+++.+
T Consensus       443 edid~li~aL~ei~r  457 (462)
T d1c4ka2         443 AKMNNLITQLLQLQR  457 (462)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998754

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.52  E-value=1.1e-12  Score=129.00  Aligned_cols=311  Identities=14%  Similarity=0.102  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccc
Q 011669          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (480)
Q Consensus       118 p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~  197 (480)
                      ++-.+++.+.++..+++.    -+...+|.++|+++++  .+.+++++|||.|+.+|++.. ...++++||+...+|+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~----G~~v~~~E~~la~~~g--~~~ai~~~sgt~Al~~al~al-~~~~gdeVi~~~~~~~~~   84 (376)
T d1mdoa_          12 AEELAAVKTVLDSGWITT----GPKNQELEAAFCRLTG--NQYAVAVSSATAGMHIALMAL-GIGEGDEVITPSMTWVST   84 (376)
T ss_dssp             HHHHHHHHHHHHHTCCSS----SHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCHHH
T ss_pred             HHHHHHHHHHHhcCCCcC----CHHHHHHHHHHHHHHC--cCeEEEeCCHHHHHHHHHHHh-CCCCCCEEEEeccccccc
Confidence            566678888887654432    3677899999999995  468899999999999999854 244678899998888776


Q ss_pred             cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChH
Q 011669          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  277 (480)
                      ..........+.+..          ..++    .+..|    .++|++.++    +++++|++....   |...+    +
T Consensus        85 ~~ai~~~g~~pv~~d----------~~~~----~~~~d----~~~l~~~i~----~~tkaIi~~h~~---G~~~~----~  135 (376)
T d1mdoa_          85 LNMIVLLGANPVMVD----------VDRD----TLMVT----PEHIEAAIT----PQTKAIIPVHYA---GAPAD----L  135 (376)
T ss_dssp             HHHHHHTTCEEEEEC----------BCTT----TCCBC----HHHHHHHCC----TTEEEECCBCGG---GCCCC----H
T ss_pred             ccchhccccceeeec----------cccc----ccCCC----HHHHHHhcC----CCCeEEEEeCCC---CCccc----h
Confidence            666554443221110          0111    11123    678888885    368888876554   44444    8


Q ss_pred             HHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCC-cceeee--ccccccCccccccccC-HHHHHhhcCCC----
Q 011669          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV-PDIVTM--AKGIGNGIPLGAVVTT-PEIAEVLTRRN----  349 (480)
Q Consensus       278 ~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~-pDivt~--sK~~g~G~pig~v~~~-~~~~~~l~~~~----  349 (480)
                      ++|.++|++||+++|.|.+|+ +|-.   +.+. ..|.. ..+.+|  .|.++.|- -|++++. +++.+.+....    
T Consensus       136 ~~i~~i~~~~~i~vIeD~a~a-~g~~---~~~~-~~g~~g~~~~Sf~~~K~l~~g~-GG~i~t~~~~l~~~~~~~~~~g~  209 (376)
T d1mdoa_         136 DAIYALGERYGIPVIEDAAHA-TGTS---YKGR-HIGARGTAIFSFHAIKNITCAE-GGIVVTDNPQFADKLRSLKFHGL  209 (376)
T ss_dssp             HHHHHHHHHHTCCBCEECTTC-TTCE---ETTE-ETTSSSEEEEECCTTSSSCSSS-CEEEEESCHHHHHHHHHHTBTTE
T ss_pred             hHHHHHHHhcCceEEeccchh-ccCe---eCCe-ecccccCccccCCCcCCCCCCC-CCEEEEechhHHHHHHhhcccCC
Confidence            999999999999999999997 5421   1111 11111 123344  38887542 2556655 55555442210    


Q ss_pred             --------------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhc-Cce-eeEecc
Q 011669          350 --------------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GII-GDVRGR  407 (480)
Q Consensus       350 --------------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~-~~v~g~  407 (480)
                                          .+..+..+.+.++.+.+.|+.+  +++.++.++..+++.+.|.++.... ... ..... 
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~-  286 (376)
T d1mdoa_         210 GVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIH-  286 (376)
T ss_dssp             ECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEEC-
T ss_pred             cccccccccccccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhcccccccccccccccccc-
Confidence                                0123334567777777766643  4556666777777777776652110 000 00111 


Q ss_pred             ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC----------------c-------CCCEEEEeCCCCCCHH
Q 011669          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG----------------F-------YGNVFRITPPLCFTKE  464 (480)
Q Consensus       408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------~-------~~~~iRi~p~~~~t~~  464 (480)
                      .....+........    ....+.+.+.|.++||-++..-                .       ..+.+.+=.....|++
T Consensus       287 ~~~~~~~~~~~~~~----~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~  362 (376)
T d1mdoa_         287 AWHLFIIRVDEARC----GITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTES  362 (376)
T ss_dssp             CCSCEEEECCHHHH----SSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHH
T ss_pred             cccccccccccccc----hhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHH
Confidence            11111222111000    0012568899999999775310                0       1234555333456999


Q ss_pred             HHHHHHHHHHHHH
Q 011669          465 DADYLVDVMDYSL  477 (480)
Q Consensus       465 ~id~~l~~l~~~l  477 (480)
                      |+++.++.|++++
T Consensus       363 ei~~I~~~i~~i~  375 (376)
T d1mdoa_         363 DFDRVITALHQIA  375 (376)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.51  E-value=1.3e-13  Score=135.20  Aligned_cols=318  Identities=11%  Similarity=-0.019  Sum_probs=163.1

Q ss_pred             CCHHHHHHHHHHHHhc----------cccccccCChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCC
Q 011669          116 CHPYVVDSIVNQIKRI----------QHSTVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGC  184 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~----------~~~~~~~~~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~  184 (480)
                      .+++|++||.+++...          .|.+. -..+.+.+.++.|+++++... ..|+|++|++++++.|+.... ..++
T Consensus        14 vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~-ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l-~~~~   91 (361)
T d2c0ra1          14 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGA-VYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF-LKEG   91 (361)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSH-HHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH-CCTT
T ss_pred             CCHHHHHHHHHHHhhhcccCccccccCcCCH-HHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcc-ccCC
Confidence            4689999999877542          12211 123567889999999997642 368888877776655554332 2345


Q ss_pred             ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccC
Q 011669          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ  264 (480)
Q Consensus       185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~  264 (480)
                      ++++...++..+.....+....           +...............      .+++++.+.   ...+  +.++   
T Consensus        92 ~~~l~~~~g~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~--~~v~---  146 (361)
T d2c0ra1          92 QTANYVMTGSWASKALKEAKLI-----------GDTHVAASSEASNYMT------LPKLQEIQL---QDNA--AYLH---  146 (361)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHH-----------SCEEEEEECGGGTTCS------CCCGGGCCC---CTTE--EEEE---
T ss_pred             CceEEEeechhhhhhhhhhhhc-----------Cceeeeeccccccccc------hhhhhhhcc---cCcc--eEEE---
Confidence            6676666665554433322211           1111111111111111      122333222   2233  3332   


Q ss_pred             CCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHh
Q 011669          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV  344 (480)
Q Consensus       265 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~  344 (480)
                      +++|...+    ++++.++|+++|+++++|.|++ +|..   .  ++..+...|+.+.+|.++.+-..++++..+.+.+.
T Consensus       147 ~~tg~~~~----~~~i~~~~~~~~al~~vDavss-~g~~---~--id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~  216 (361)
T d2c0ra1         147 LTSNETIE----GAQFKAFPDTGSVPLIGDMSSD-ILSR---P--FDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAES  216 (361)
T ss_dssp             EESEETTT----TEECSSCCCCTTSCEEEECTTT-TTSS---C--CCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSC
T ss_pred             Eeccccee----cceEEEeeccCCceEEEEeecc-cccc---c--cccccceeEEEecccccccccCcEEEEEhHHhhhC
Confidence            23444444    5567789999999999999997 4322   2  33344567788888998842222333333332221


Q ss_pred             hcCCC-----------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcC-c---e--eeEecc
Q 011669          345 LTRRN-----------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-I---I--GDVRGR  407 (480)
Q Consensus       345 l~~~~-----------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~---~--~~v~g~  407 (480)
                      -....           .......++........++................+..+..+........ .   .  ...+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~  296 (361)
T d2c0ra1         217 PKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSD  296 (361)
T ss_dssp             CTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCS
T ss_pred             ccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccc
Confidence            11110           00111222333333333333222222222222222222222222222221 1   1  111222


Q ss_pred             ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      + ...+.+        |+......+.+.|.++||.+..|-..-+.+||+....+|.|||++++++|++..++
T Consensus       297 ~-~~~~~~--------~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         297 M-NITFRL--------ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             S-EEEEEC--------SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             e-EEEEEC--------CCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            2 223333        34455678999999999998876211123999999889999999999999987653

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.47  E-value=2.7e-12  Score=125.46  Aligned_cols=218  Identities=16%  Similarity=0.067  Sum_probs=140.9

Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      .+.+..++....|+++|+++.++  +..+.++||.-|+..++.....  .+++||+.+..|+|.........        
T Consensus        52 ~Y~R~~nPT~~~LE~~la~LEg~--~~a~~~~SGmaAi~~~l~~l~~--~Gd~vl~~~~~Yg~t~~l~~~~~--------  119 (392)
T d1gc0a_          52 FYSRISNPTLNLLEARMASLEGG--EAGLALASGMGAITSTLWTLLR--PGDEVLLGNTLYGCTFAFLHHGI--------  119 (392)
T ss_dssp             -----CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCSHHHHHHHHTG--------
T ss_pred             eecCCCChHHHHHHHHHHHHhCC--cceeehhhHHHHHHHHHHhhcc--CCCeeecccccchhhhhhhhhhh--------
Confidence            34566789999999999999853  5678899999999998876543  67899999999987554332221        


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA  293 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  293 (480)
                       +..|+....++.       .|    .++++++++    +++++|++|.+.|+...+..    +++|+++|+++|+++|+
T Consensus       120 -~~~Gi~~~~~d~-------~d----~~~~~~ai~----~~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vv  179 (392)
T d1gc0a_         120 -GEFGVKLRHVDM-------AD----LQALEAAMT----PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVV  179 (392)
T ss_dssp             -GGGTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEE
T ss_pred             -ccCCcccccCCc-------cC----HHHHHHhCC----CCCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEE
Confidence             112444332211       13    567888775    47899999999999988877    99999999999999999


Q ss_pred             cccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCHHHHHhhcCCCc--cccCCCcHHHHHHHHHH
Q 011669          294 DEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       294 DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~--~~t~~~~~~~~aaa~a~  367 (480)
                      |.....       +..+.-.....|++  +.+|-++| | .-.|.++++++.+..++....  ..--..+|..+...+..
T Consensus       180 DnT~at-------P~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rg  252 (392)
T d1gc0a_         180 DNTYCT-------PYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRG  252 (392)
T ss_dssp             ECTTTH-------HHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHH
T ss_pred             ecCccC-------ccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhc
Confidence            998751       11122223345665  67799986 4 667888889887765432111  11122346666665555


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHH
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~  392 (480)
                      |+.+.  -..++..++...+.+.|+
T Consensus       253 l~TL~--lRm~~~~~nA~~lA~~L~  275 (392)
T d1gc0a_         253 IKTLN--LRMDRHCANAQVLAEFLA  275 (392)
T ss_dssp             HTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             cccHH--HHHHHHHHHHHHHHHHHH
Confidence            54321  223334444444444443

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.46  E-value=2.4e-11  Score=122.72  Aligned_cols=304  Identities=10%  Similarity=-0.025  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHhCCCCC---------CEEEEeCCHHHHHHHHHHHHHhhc---------C-------CceEEEEcCCccc
Q 011669          142 AIADFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLYT---------G-------CNDIISLRNAYHG  196 (480)
Q Consensus       142 ~~~~l~e~L~~~~~~~~---------~~v~f~~sGseA~~~Alk~ar~~~---------~-------~~~ii~~~~~yhG  196 (480)
                      ...++.++|+++++.+.         ..-+|++|||+||..||..||...         +       +.-+++....-|-
T Consensus       114 iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~  193 (476)
T d1js3a_         114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS  193 (476)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred             HHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccH
Confidence            34556777888774321         245799999999999999998631         0       1234444444555


Q ss_pred             ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCceEEEEEcccCCCCcceeCCC
Q 011669          197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAP  274 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~  274 (480)
                      ...-+....+.          ++..++....    +.-|    .++|++.|++.  ....+.+|+..-...++|.+.|  
T Consensus       194 Si~ka~~~lGl----------~~~~v~~d~~----~~md----~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp--  253 (476)
T d1js3a_         194 SVERAGLIGGV----------KLKAIPSDGK----FAMR----ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN--  253 (476)
T ss_dssp             HHHHHHHHHTC----------EEEEECCCTT----SCCC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC--
T ss_pred             HHHHHHHhcCc----------eEEEeccCCC----CCcC----HHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc--
Confidence            44444433332          3333333221    1124    56777777532  1335667777777778899988  


Q ss_pred             ChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCC-Ccceeeec--cccccCccccccccCHH--HHHhhcCCC
Q 011669          275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPE--IAEVLTRRN  349 (480)
Q Consensus       275 ~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~-~pDivt~s--K~~g~G~pig~v~~~~~--~~~~l~~~~  349 (480)
                        +++|.++|++||++|++|.++.|+...-.+ ......++ ..|.+++.  |.++..+..|+++.++.  +...+....
T Consensus       254 --l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~-~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~  330 (476)
T d1js3a_         254 --LLEVGPICHEEDIWLHVDAAYAGSAFICPE-FRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDP  330 (476)
T ss_dssp             --HHHHHHHHHHTTCEEEEECTTGGGGGGSTT-TGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC---
T ss_pred             --HHHHHHHHHhcCcEEEEecccchhhhhhcc-hhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcCh
Confidence              999999999999999999999887433211 11112244 36888775  98887788888888753  222221110


Q ss_pred             ----------c----c--ccC-CCcHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHhHHhcCceeeEe-ccc
Q 011669          350 ----------Y----F--NTF-GGNPVCTAAGHAVLKVIQKDKLQ---NNAHVVGSYLKERLTALKDKYGIIGDVR-GRG  408 (480)
Q Consensus       350 ----------~----~--~t~-~~~~~~~aaa~a~L~~i~~~~~~---~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g  408 (480)
                                .    .  .+. ++-+......+.+++.+..+.+.   ++..++.+++.+.|++    .+.+.-+. ..-
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~----~~~fel~~~p~l  406 (476)
T d1js3a_         331 VYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ----DPRFEVCAEVTL  406 (476)
T ss_dssp             ---------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CTTEEECSCCCS
T ss_pred             hhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----CCCeEEECCCce
Confidence                      0    0  111 12222333445566655555444   4444455555555544    34332221 222


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcC-ceeeccCcC-CCEEEEeCC-CCCCHHHHHHHHHHHHHHHhh
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMG-VLVGKGGFY-GNVFRITPP-LCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~~~~-~~~iRi~p~-~~~t~~~id~~l~~l~~~l~~  479 (480)
                      .++.|.+.       +.......+.+.+.+.| +++.+.... ..++|++.. ..++++||+.+++.|++..++
T Consensus       407 ~iV~Fr~~-------~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~  473 (476)
T d1js3a_         407 GLVCFRLK-------GSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE  473 (476)
T ss_dssp             SEEEEEES-------SCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcc-------CChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            23444442       22233456778888887 445443222 237899865 567899999999999988765

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.45  E-value=1.6e-11  Score=120.14  Aligned_cols=292  Identities=17%  Similarity=0.118  Sum_probs=177.6

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +.+.+..++....|+++|+++.++  +.++.++||..|+..++....  ..++.||+.+..|.|.........       
T Consensus        59 ~~Y~R~~nPt~~~LE~~la~LEgg--~~a~~~sSGMaAi~~~l~~l~--~~Gd~iv~~~~~Yg~t~~l~~~~~-------  127 (398)
T d1qgna_          59 FEYGRYGNPTTVVLEEKISALEGA--ESTLLMASGMCASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETIL-------  127 (398)
T ss_dssp             CCBGGGCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHS--CSSCEEEEETTSCHHHHHHHHHTG-------
T ss_pred             ceecCCCChHHHHHHHHHHHHhCC--ceEEEecCcchHHHHHHhhcc--cccccccccccccchhhhhhcccc-------
Confidence            344566789999999999999753  568899999999999887543  368899999999966443322211       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHH-HHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDV-QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC  291 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l-e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  291 (480)
                        +..|+....+..       .+    .++. +.++.    +++++|++|.+-|+...++.    +++|.++|+++|+++
T Consensus       128 --~~~gi~~~~~~~-------~~----~~~~~~~~~~----~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~  186 (398)
T d1qgna_         128 --PKMGITATVIDP-------AD----VGALELALNQ----KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALV  186 (398)
T ss_dssp             --GGGTCEEEEECS-------SC----HHHHHHHHHH----SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEE
T ss_pred             --cccccccccccc-------cc----hhhhhhhhcc----ccceEEEccCccccccccch----HHHHHHHHhhcCCEE
Confidence              112443322211       12    1223 33333    48899999999999877766    999999999999999


Q ss_pred             EEcccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHH
Q 011669          292 IADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       292 I~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~  367 (480)
                      |+|.....       +..+.......|+|  +.+|-++| | +-.|+++.+++.+..+........-..+|..+...+..
T Consensus       187 vVDnT~at-------P~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rg  259 (398)
T d1qgna_         187 CIDGTFAT-------PLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRG  259 (398)
T ss_dssp             EEECTTTC-------TTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred             Eecceeec-------cccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhc
Confidence            99998641       22233334445666  67899986 4 66778888888877665422111122456666555544


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEecCCCcCCCCHHHH
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKAET  429 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~~  429 (480)
                      |+.+  +-..++..++...+.+.|+    .+|.+..                  ..|.|.++.|++..+       ...+
T Consensus       260 l~TL--~lRm~~~~~nA~~lA~~L~----~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~-------~~~a  326 (398)
T d1qgna_         260 MKTL--HLRVQQQNSTALRMAEILE----AHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-------LLTT  326 (398)
T ss_dssp             GGGH--HHHHHHHHHHHHHHHHHHH----TCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-------HHHH
T ss_pred             chHH--HHHHHHHHHHHHHHHHHHH----hCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCC-------HHHH
Confidence            4322  1123333444444444443    3454432                  245577777776321       2334


Q ss_pred             HHHHHHHH--HcCceeecc-----------------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          430 LYIMDKMK--EMGVLVGKG-----------------------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       430 ~~~~~~l~--~~Gv~v~~~-----------------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      .++.+.|+  ..+.-++..                       |..++.|||+..+    |+++.+++-|+++|+++
T Consensus       327 ~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         327 AKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALDSI  398 (398)
T ss_dssp             HHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHhcC
Confidence            55665553  222222110                       1124689999654    55666777777777653

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.44  E-value=1.1e-11  Score=121.18  Aligned_cols=239  Identities=14%  Similarity=0.061  Sum_probs=152.4

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +.+.+..++....|+++|+++.++  +..+.++||..|+..++.....  .++.||+.++.|.|........        
T Consensus        55 ~~Y~R~~nPT~~~LE~~la~LEgg--~~a~~~sSGmaAi~~~l~~ll~--~Gd~vi~~~~~Yg~t~~~~~~~--------  122 (397)
T d1y4ia1          55 YIYTRLGNPTTDALEKKLAVLERG--EAGLATASGISAITTTLLTLCQ--QGDHIVSASAIYGCTHAFLSHS--------  122 (397)
T ss_dssp             SCCCTTSCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSSCHHHHHHHHTH--------
T ss_pred             ceeeCCCCHHHHHHHHHHHHHhCC--ccceeehHHHHHHHHHHhhccC--CCCeeeeecccccccchhhhcc--------
Confidence            344566789999999999999854  5678899999999988865433  6889999999987644332211        


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                       .+..|+....+..       .|    .+.++++++    +++++|++|.+-|+...+..    +++|.++|+++|+++|
T Consensus       123 -l~~~Gi~~~~vd~-------~d----~~~~~~~i~----~~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~v  182 (397)
T d1y4ia1         123 -MPKFGINVRFVDA-------GK----PEEIRAAMR----PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLV  182 (397)
T ss_dssp             -HHHTTCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred             -cCCCceEeeccCC-------CC----HHHHHHhcC----CCCcEEEecCCcccceeecc----cHHHHHHhhcCCceEE
Confidence             1113444432221       23    467777774    48999999999888877766    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCHHHHHhhcCCCcccc--CCCcHHHHHHHHH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNT--FGGNPVCTAAGHA  366 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~~~t--~~~~~~~~aaa~a  366 (480)
                      +|.....       ++.++......|++  +++|-++| + .=.|+++++++.+...+.......  -..+|..+...+.
T Consensus       183 vDnT~at-------P~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~r  255 (397)
T d1y4ia1         183 VDNTFMS-------PYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLR  255 (397)
T ss_dssp             EECTTTC-------TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHH
T ss_pred             ecCcccC-------cccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHc
Confidence            9998642       22233333335655  67799996 3 567788899887654321111111  2235666666555


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEe
Q 011669          367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (480)
Q Consensus       367 ~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~  416 (480)
                      .|+.+.  -..++..++...+.+.|    +.++.+..                  ..+.|.++.|++.
T Consensus       256 gl~TL~--lRm~~~~~nA~~lA~~L----~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~  317 (397)
T d1y4ia1         256 GVKTLG--IRMERHCENALKIARFL----EGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIA  317 (397)
T ss_dssp             HHTTHH--HHHHHHHHHHHHHHHHH----HTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEET
T ss_pred             CcCcHH--HHHHHHHHHHHHHHHHH----HhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEec
Confidence            554321  12333344444444444    34454433                  2345777778763

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.43  E-value=5.5e-13  Score=130.25  Aligned_cols=318  Identities=9%  Similarity=-0.072  Sum_probs=167.0

Q ss_pred             CCHHHHHHHHHHHHhc----------cccccccCChHHHHHHHHHHHhCCCCCC-EEEEeCCHHHHHHHHHHHHHhhcCC
Q 011669          116 CHPYVVDSIVNQIKRI----------QHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGC  184 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~----------~~~~~~~~~~~~~~l~e~L~~~~~~~~~-~v~f~~sGseA~~~Alk~ar~~~~~  184 (480)
                      .|++|.+||.+++..+          .|.+.. ......+.++.|+++++.+.+ .|+|++|+++++..+...... .++
T Consensus        14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~-~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~-~~~   91 (360)
T d1w23a_          14 LPKPALERAQKELLNFNDTQMSVMELSHRSQS-YEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLL-TKG   91 (360)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHH-HHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CTT
T ss_pred             CCHHHHHHHHHHHHhhcccCccccccCcCCHH-HHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhc-ccC
Confidence            4799999999977542          121111 134667889999999876444 678888887777766654433 356


Q ss_pred             ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccC
Q 011669          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ  264 (480)
Q Consensus       185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~  264 (480)
                      +.+++...++++..........           +...+.......... .     .++++..+     .....+.++.+ 
T Consensus        92 ~~v~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~-----~~~~~~~~-----~~~~~~~~~~~-  148 (360)
T d1w23a_          92 TIGNYVLTGSWSEKALKEAKLL-----------GETHIAASTKANSYQ-S-----IPDFSEFQ-----LNENDAYLHIT-  148 (360)
T ss_dssp             CEEEEEECSHHHHHHHHHHHTT-----------SEEEEEEECGGGTSC-S-----CCCGGGCC-----CCTTEEEEEEE-
T ss_pred             cccceeeccchhhhhHHHHHHh-----------hhcceeecccccccc-c-----hhhhhhcc-----cccccceeEec-
Confidence            6777766666655443332211           111111000000000 0     01121111     23344555554 


Q ss_pred             CCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHh
Q 011669          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV  344 (480)
Q Consensus       265 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~  344 (480)
                        +|.+.+    ++++.++|+++|+++|+|-+|+ +|-.   .  ++......|+.+++|.++.+-+.+.++.++...+.
T Consensus       149 --tg~~~~----~~~i~~~~~~~g~l~ivDavqs-~g~~---~--id~~~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~  216 (360)
T d1w23a_         149 --SNNTIY----GTQYQNFPEINHAPLIADMSSD-ILSR---P--LKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTK  216 (360)
T ss_dssp             --SEETTT----TEECSSCCCCCSSCEEEECTTT-TTSS---C--CCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSC
T ss_pred             --CCcccc----ceeeeeccccceeeEEeecccc-cccc---c--cccccccceEEeeccccccCCcceeeEechhhhcc
Confidence              455555    6778899999999999999997 4321   1  33334567889999988754344545444433221


Q ss_pred             hcCCC-----------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCce------eeEecc
Q 011669          345 LTRRN-----------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII------GDVRGR  407 (480)
Q Consensus       345 l~~~~-----------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~------~~v~g~  407 (480)
                      .....           ........+....+....+....+........+........+..........      ...|..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~  296 (360)
T d1w23a_         217 VEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSL  296 (360)
T ss_dssp             CTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCS
T ss_pred             cccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcce
Confidence            11110           0011112222222222222222222222222222222222222222222111      112322


Q ss_pred             ceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       408 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                      + .+.|.+        ++......+...|.++||.+..|-..-+.+|++....+|.||++.+++.|++..+.
T Consensus       297 ~-vvsf~i--------~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         297 M-NVTFNL--------RNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             S-EEEEEC--------SSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             e-EEEEEc--------CCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence            2 223333        34455677888899999998765211134899976677999999999999998764

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.41  E-value=1.4e-11  Score=121.53  Aligned_cols=314  Identities=14%  Similarity=0.110  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccc
Q 011669          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN  197 (480)
Q Consensus       118 p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~  197 (480)
                      .+-.+++.+.++......  ..-+...++.++++++++  .+.+++++|||.|+++|++.+ ...++++||+..-+|...
T Consensus        13 ~~~~~~~~~~l~~g~~~~--~~g~~v~~fE~~~a~~~g--~~~~v~~~SGt~Al~lal~~l-~~~~gdeVi~p~~t~~a~   87 (384)
T d1b9ha_          13 DAERNGLVRALEQGQWWR--MGGDEVNSFEREFAAHHG--AAHALAVTNGTHALELALQVM-GVGPGTEVIVPAFTFISS   87 (384)
T ss_dssp             HHHHHHHHHHHHTSCCBT--TTCSHHHHHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTHH
T ss_pred             HHHHHHHHHHHHcCCeee--cCCHHHHHHHHHHHHHHC--cCeEEEeCCHHHHHHHHHHHc-CCCCCCEEEEeccccccc
Confidence            566778888887652211  124678899999999994  567899999999999999854 344678899988888654


Q ss_pred             cccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChH
Q 011669          198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL  277 (480)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  277 (480)
                      ....+.....+             +.++. ....+..|    .+.+++.+.    .++++|++....|.   ...    +
T Consensus        88 ~~ai~~~g~~p-------------~~~d~-~~~~~~~d----~~~~~~~i~----~~tk~i~~~~~~g~---~~d----~  138 (384)
T d1b9ha_          88 SQAAQRLGAVT-------------VPVDV-DAATYNLD----PEAVAAAVT----PRTKVIMPVHMAGL---MAD----M  138 (384)
T ss_dssp             HHHHHHTTCEE-------------EEECB-CTTTCCBC----HHHHHHHCC----TTEEEECCBCGGGC---CCC----H
T ss_pred             ccccccccccc-------------ccccc-cccccccc----hhhhccccc----cccccccccccccc---ccc----c
Confidence            44444333211             11110 00111123    566776663    47888887666553   222    8


Q ss_pred             HHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeee----ccccccCccccccccC-HHHHHhhcCC----
Q 011669          278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM----AKGIGNGIPLGAVVTT-PEIAEVLTRR----  348 (480)
Q Consensus       278 ~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~----sK~~g~G~pig~v~~~-~~~~~~l~~~----  348 (480)
                      .++.++|+++|+.+|.|.+|+ +|-.   +. -...|..-|+.++    +|.++.|- -|+++++ +++.+.+...    
T Consensus       139 ~~i~~~~~~~~i~lieD~a~a-~ga~---~~-g~~~g~~g~~~~~Sf~~~K~i~~g~-GG~i~t~~~~~~~~~~~~~~~g  212 (384)
T d1b9ha_         139 DALAKISADTGVPLLQDAAHA-HGAR---WQ-GKRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRHS  212 (384)
T ss_dssp             HHHHHHHHHHTCCBCEECTTC-TTCE---ET-TEEGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHTB
T ss_pred             ccchhhhhhhhhhhhhhhcee-cccc---cC-CEecCcccccceecccccccccccc-cchhhhhhHHHHHHHHHHHhcC
Confidence            999999999999999999997 4321   11 1122333355443    48887442 3556655 4554443211    


Q ss_pred             -------------CccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE---eccceeEE
Q 011669          349 -------------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV---RGRGFLLG  412 (480)
Q Consensus       349 -------------~~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~  412 (480)
                                   ..+..+-.+.+.++.+++.|+.+  +++.++-+++.+++.+.|.++..-.+.....   .....+..
T Consensus       213 ~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~  290 (384)
T d1b9ha_         213 CGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAM  290 (384)
T ss_dssp             TTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEE
T ss_pred             CCCccccccccccccccccccccchhhhhhhhhhhc--ccchhhhhhhhhhhhhhhhccccccccccccccccccccccc
Confidence                         01233445677777777777644  3445555566666666665542111000111   11111222


Q ss_pred             EEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCc-------------------------------CCCEEEEeCCCCC
Q 011669          413 VEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGF-------------------------------YGNVFRITPPLCF  461 (480)
Q Consensus       413 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------------~~~~iRi~p~~~~  461 (480)
                      +.+ ..     ......+.+.+.|.++||-++....                               ..+.+.|=.....
T Consensus       291 ~~~-~~-----~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~L  364 (384)
T d1b9ha_         291 FRI-PG-----LTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLL  364 (384)
T ss_dssp             EEC-TT-----CCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGG
T ss_pred             cee-cc-----cccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCC
Confidence            222 11     1223456789999999998753210                               0123444323334


Q ss_pred             C-HHHHHHHHHHHHHHHhh
Q 011669          462 T-KEDADYLVDVMDYSLSK  479 (480)
Q Consensus       462 t-~~~id~~l~~l~~~l~~  479 (480)
                      | ++|++..++.|++++.+
T Consensus       365 t~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         365 AGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            5 68999999999999875

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.40  E-value=1.2e-11  Score=120.52  Aligned_cols=216  Identities=16%  Similarity=0.083  Sum_probs=133.7

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      +.+..++....|+++|+++-++  +.++.++||..|+. ++..  ....++.||+.+..|-| +...+...        .
T Consensus        43 Y~R~~nPt~~~le~~la~LE~~--~~a~~fsSGMaAis-all~--ll~~Gd~vv~~~~~Yg~-t~~l~~~~--------~  108 (380)
T d1ibja_          43 YTRSGNPTRDALESLLAKLDKA--DRAFCFTSGMAALS-AVTH--LIKNGEEIVAGDDVYGG-SDRLLSQV--------V  108 (380)
T ss_dssp             BTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHH-HHHT--TSCTTCEEEEESSCCHH-HHHHHHHT--------S
T ss_pred             eeCCCChHHHHHHHHHHHHcCC--ceEEehhhHHHHHH-HHHH--hhCCCCEEEEEeccccc-ccchhhhh--------h
Confidence            4566789999999999999854  56789999999985 4432  23467888888877744 43332221        1


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      +..|+.......       .+    .++++++++    +++++|++|.+.|+...++.    +++|+++|+++|+++|+|
T Consensus       109 ~~~gi~~~~~d~-------~~----~~~~~~ai~----~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVD  169 (380)
T d1ibja_         109 PRSGVVVKRVNT-------TK----LDEVAAAIG----PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVD  169 (380)
T ss_dssp             GGGTCEEEEECT-------TS----HHHHHHHCC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEE
T ss_pred             ccccccccccCc-------ch----HHHHHHHhc----cCccEEEecccccccccccc----HHHHHHHHHHcCCeEEee
Confidence            122444332211       12    466777764    48999999999999888877    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      ......       +.+.......|++  +.+|-++| | .-.|+++.+ +++.+.+.......--..+|..+...+..|+
T Consensus       170 nT~atP-------~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~  242 (380)
T d1ibja_         170 NSIMSP-------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIK  242 (380)
T ss_dssp             CTTTCT-------TTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHT
T ss_pred             cccccc-------ccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcch
Confidence            986521       1122223345665  67799986 4 556676666 5565555432211111234666655555554


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHH
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLT  392 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~  392 (480)
                      .+.  -..++..++...+.+.|+
T Consensus       243 Tl~--lRm~~~~~nA~~lA~~L~  263 (380)
T d1ibja_         243 TMA--LRIEKQQENARKIAMYLS  263 (380)
T ss_dssp             THH--HHHHHHHHHHHHHHHHHH
T ss_pred             hhh--hhHHHHHHHHHHHHHHHH
Confidence            321  223334444444444443

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.39  E-value=1.2e-10  Score=114.08  Aligned_cols=315  Identities=14%  Similarity=0.095  Sum_probs=177.8

Q ss_pred             HHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCccccccc
Q 011669          121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG  200 (480)
Q Consensus       121 ~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~  200 (480)
                      ++++.+.++..+.++.   -+...+|.+++++.++  .+.+++++|||.|+.+|++.+ ...++++||+..-+|-.....
T Consensus         4 ~~~~~~~l~~~~~~~~---G~~~~~fE~~~~~~~~--~~~~~~~~SgT~Al~lal~~l-~~~~gdeVi~p~~t~~a~~~~   77 (374)
T d1o69a_           4 LKYIEEVFKSNYIAPL---GEFVNRFEQSVKDYSK--SENALALNSATAALHLALRVA-GVKQDDIVLASSFTFIASVAP   77 (374)
T ss_dssp             HHHHHHHHHHTTTSCT---THHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCGGGTHH
T ss_pred             HHHHHHHHhcCCcCCC---CHHHHHHHHHHHHHHC--cCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEeCCcchHhhHHH
Confidence            5677777776543321   3678889999999984  468999999999999999865 344678899987777544333


Q ss_pred             ccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHH
Q 011669          201 TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAV  280 (480)
Q Consensus       201 ~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l  280 (480)
                      ......             ..+.+... ...+ ..    ..+.++..... ..++.++++-...|.   ...    ++++
T Consensus        78 ~~~~g~-------------~pv~~Di~-~~~~-~~----~~~~~~~~~~~-~~~~~aii~~~~~G~---~~d----~~~i  130 (374)
T d1o69a_          78 ICYLKA-------------KPVFIDCD-ETYN-ID----VDLLKLAIKEC-EKKPKALILTHLYGN---AAK----MDEI  130 (374)
T ss_dssp             HHHTTC-------------EEEEECBC-TTSS-BC----HHHHHHHHHHC-SSCCCEEEEECGGGC---CCC----HHHH
T ss_pred             Hhhccc-------------eeEecccc-cccc-cc----cccccccchhc-ccccccccccccccc---hhh----hHHH
Confidence            333322             22211110 0000 01    12222222222 235667776555432   222    8999


Q ss_pred             HHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec----cccccCccccccccC-HHHHHhhcCCC------
Q 011669          281 YKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRRN------  349 (480)
Q Consensus       281 ~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~~------  349 (480)
                      .++|+++|+.||.|.+|+ ||-   .+. -...|-.-|+.+||    |.++.|=. |++++. +++++.+....      
T Consensus       131 ~~~~~~~~i~vIED~a~a-~g~---~~~-~~~~G~~gd~~~fSf~~~K~l~tgeG-G~i~tnn~~~~~~~~~~~~~g~~~  204 (374)
T d1o69a_         131 VEICKENDIVLIEDAAEA-LGS---FYK-NKALGTFGEFGVYSYNGNKIITTSGG-GMLIGKNKEKIEKARFYSTQAREN  204 (374)
T ss_dssp             HHHHHHTTCEEEEECTTC-TTC---EET-TEETTSSSSEEEEECCTTSSSCCSSC-EEEEESCHHHHHHHHHHTBTCCCS
T ss_pred             HHHhhccCcchhhhhhhh-hcc---eEC-CeecCCCCceEEEeccCccccccccc-eeehhhhHHHHHhhcccccccccc
Confidence            999999999999999997 432   111 12234455877765    88874322 555554 66766553210      


Q ss_pred             --------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCC-
Q 011669          350 --------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-  420 (480)
Q Consensus       350 --------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-  420 (480)
                              .+..+-.+.+.++.+++.|+.+  +++.++-++..+++.+.|.+.....+..........+..+-+..+.. 
T Consensus       205 ~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l--~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  282 (374)
T d1o69a_         205 CLHYEHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNE  282 (374)
T ss_dssp             SSSCCCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGG
T ss_pred             ccccccccCCccccccchhhhhhHHHHhhh--hhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeecccccc
Confidence                    1233445678888888877654  33455555566666666655321111111111111111111111100 


Q ss_pred             ------------cCCCCHHHHHHHHHHHHHcCceeeccC--c-----C---------------CCEEEEeCCC--CCCHH
Q 011669          421 ------------LKTPAKAETLYIMDKMKEMGVLVGKGG--F-----Y---------------GNVFRITPPL--CFTKE  464 (480)
Q Consensus       421 ------------~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~-----~---------------~~~iRi~p~~--~~t~~  464 (480)
                                  ...........+.+.|.++||-+++.-  .     +               ...  |+.|+  ..|++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~--i~LP~~~~lt~~  360 (374)
T d1o69a_         283 LNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKG--ICLPSGTAMSKD  360 (374)
T ss_dssp             SCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHE--EEECCCTTCCHH
T ss_pred             ccccccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCE--EECcCCCCCCHH
Confidence                        001122345678999999999775421  0     0               122  33343  45999


Q ss_pred             HHHHHHHHHHHHHh
Q 011669          465 DADYLVDVMDYSLS  478 (480)
Q Consensus       465 ~id~~l~~l~~~l~  478 (480)
                      |++..++.|.++++
T Consensus       361 di~~I~~~I~~~lk  374 (374)
T d1o69a_         361 DVYEISKLILKSIK  374 (374)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHC
Confidence            99999999999874

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=4.7e-11  Score=116.32  Aligned_cols=237  Identities=14%  Similarity=0.080  Sum_probs=146.9

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      +.+..+|....|+++|+++-++  +..+.++||..|+..++.....  +++.|++.+..|.|.........         
T Consensus        44 Y~R~~nPt~~~le~~la~LEgg--~~a~~~sSGMaAi~~~l~~l~~--~gd~vv~~~~~yg~t~~~~~~~~---------  110 (384)
T d1cs1a_          44 YSRRGNPTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFDSLA---------  110 (384)
T ss_dssp             BTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHHHH---------
T ss_pred             ccCCCCHHHHHHHHHHHHHhCC--CceEEecChHHHHHHHHhhccc--ccceecccccccchhhhhhhhhh---------
Confidence            4556789999999999999853  5688999999999988875543  67888888888855433222111         


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEc
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD  294 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  294 (480)
                      +..++....+..       .|    .+.+++.+.    +++++|++|.+-|+...++.    +++|.++|+++|+++|+|
T Consensus       111 ~~~g~~~~~~d~-------~d----~~~~~~~~~----~~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVD  171 (384)
T d1cs1a_         111 KRGCYRVLFVDQ-------GD----EQALRAALA----EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVD  171 (384)
T ss_dssp             TTTSCEEEEECT-------TC----HHHHHHHHH----TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEE
T ss_pred             cccccccccccC-------CC----HHHHHhhcc----ccccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEe
Confidence            112333222111       13    456777775    37889999999998877776    999999999999999999


Q ss_pred             ccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHHHHHH
Q 011669          295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK  369 (480)
Q Consensus       295 Ev~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~a~L~  369 (480)
                      .....       ++.+.......||+  +.+|-++| | .=.|+++.+ +++.+.+...........+|..+...+..|+
T Consensus       172 NT~at-------P~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~  244 (384)
T d1cs1a_         172 NTFLS-------PALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR  244 (384)
T ss_dssp             CTTTC-------TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred             ccccC-------cccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccc
Confidence            98641       11122223335655  67899996 4 566777775 4555544432111112245666555554444


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEEe
Q 011669          370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFV  416 (480)
Q Consensus       370 ~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~  416 (480)
                      .+.  -..++..++...+.+.|    +.+|.+..                  ..|.|.++.+++.
T Consensus       245 TL~--lRm~~~~~nA~~lA~~L----~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~  303 (384)
T d1cs1a_         245 TLV--PRMELAQRNAQAIVKYL----QTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD  303 (384)
T ss_dssp             THH--HHHHHHHHHHHHHHHHH----TTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES
T ss_pred             hhH--HHHHHHHHHHHHHHHhc----ccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeec
Confidence            321  12333344444444444    34454433                  3355778888774

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=2.9e-12  Score=124.57  Aligned_cols=320  Identities=10%  Similarity=-0.058  Sum_probs=161.7

Q ss_pred             CCHHHHHHHHHHHHhcc----------ccccccCChHHHHHHHHHHHhCCCCC-CEEEEeCCHHHHHHHHHHHHHhhcCC
Q 011669          116 CHPYVVDSIVNQIKRIQ----------HSTVLYLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGC  184 (480)
Q Consensus       116 ~~p~v~~A~~~~~~~~~----------~~~~~~~~~~~~~l~e~L~~~~~~~~-~~v~f~~sGseA~~~Alk~ar~~~~~  184 (480)
                      .+|+|++||.+++.+..          |.+.. ......+.++.|+++++... ..|+|++|++++++.++.... ..++
T Consensus        12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~e-f~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~-~~~~   89 (360)
T d1bjna_          12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKE-FIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNI-LGDK   89 (360)
T ss_dssp             CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHH-HHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH-CTTC
T ss_pred             CCHHHHHHHHHHHhhhcccCccccccCcCCHH-HHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcc-cccc
Confidence            47999999999876431          21110 12456788999999987643 368888887777766654332 3355


Q ss_pred             ceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccC
Q 011669          185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ  264 (480)
Q Consensus       185 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~  264 (480)
                      +.+++..+++.+.....+....           +...+..........  +    .+++++.+.    .++.++.+....
T Consensus        90 ~~v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~--~----~~~~~~~~~----~~~~~v~v~~~~  148 (360)
T d1bjna_          90 TTADYVDAGYWAASAIKEAKKY-----------CTPNVFDAKVTVDGL--R----AVKPMREWQ----LSDNAAYMHYCP  148 (360)
T ss_dssp             CEEEEEESSHHHHHHHHHHTTT-----------SEEEEEECEEEETTE--E----EECCGGGCC----CCSSCSCEEECS
T ss_pred             cccceecccchhhhhHHHHhhc-----------CccceeeccccCCCc--c----hhhhhhhhc----cCCceeEEEecc
Confidence            6666666555443333222211           111111110000000  0    111222222    122222222233


Q ss_pred             CCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeeccccccCccccccccCHHHHHh
Q 011669          265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV  344 (480)
Q Consensus       265 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~sK~~g~G~pig~v~~~~~~~~~  344 (480)
                      +.+|...+.+..      .++.+++++++|-+++ ++..     .++..++..|+.+.+|.++.+.+.+.++..+...+.
T Consensus       149 ~~t~~~~~~~~i------~~~~~~~~v~vDa~~~-~~~~-----~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~  216 (360)
T d1bjna_         149 NETIDGIAIDET------PDFGADVVVAADFSST-ILSR-----PIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKA  216 (360)
T ss_dssp             EETTTTEECCCC------CCCCTTCCEEEECTTT-TTSS-----CCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCC
T ss_pred             cccccCccccce------ecccccceeeeeeecc-ccce-----eeeeccceeEEEEcccccccCCCceeEeeehhhhhc
Confidence            445555543322      4567899999998875 4322     144556666778888999866555555555443222


Q ss_pred             hcCCC-----------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCcee-----eEeccc
Q 011669          345 LTRRN-----------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG-----DVRGRG  408 (480)
Q Consensus       345 l~~~~-----------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-----~v~g~g  408 (480)
                      .....           ........+.....+.........+...+...+........+...........     ..+..+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~  296 (360)
T d1bjna_         217 NIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRM  296 (360)
T ss_dssp             CTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSS
T ss_pred             cccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccce
Confidence            11110           00111222222222222222222222222222222222222223322222211     122222


Q ss_pred             eeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccCcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 011669          409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADYLVDVMDYSLSK  479 (480)
Q Consensus       409 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~  479 (480)
                       .+.+.+        |+......+...|.++||.+..|-..-+.+|++....+|+|||+.+++.|++..++
T Consensus       297 -v~~f~~--------~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~  358 (360)
T d1bjna_         297 -NVPFQL--------ADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR  358 (360)
T ss_dssp             -EEEEEE--------SSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEEc--------CCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence             334444        22333567888899999998765211124899998889999999999999997653

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=4.2e-11  Score=117.13  Aligned_cols=293  Identities=15%  Similarity=0.125  Sum_probs=171.2

Q ss_pred             cccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCcccc
Q 011669          134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN  213 (480)
Q Consensus       134 ~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  213 (480)
                      .+.+..+|....|.++|+++-++  +.++.++||..|+..++.....  .++.||+....|-| +...+...        
T Consensus        51 ~Y~R~~nPt~~~le~~la~LEg~--~~a~~~~SGMaAi~~~l~~l~~--~Gd~iv~~~~~Yg~-T~~l~~~~--------  117 (391)
T d1cl1a_          51 FYGRRGTLTHFSLQQAMCELEGG--AGCVLFPCGAAAVANSILAFIE--QGDHVLMTNTAYEP-SQDFCSKI--------  117 (391)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--TTCEEEEETTSCHH-HHHHHHHT--------
T ss_pred             EeECCCChhHHHHHHHHHHHhCC--ccEEEeccccceeeehhhcccC--CCCeEEEecccccc-hhhhhhhc--------
Confidence            34566799999999999999853  6788999999999999876543  67788888777744 33333211        


Q ss_pred             ccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHh--CCEE
Q 011669          214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLC  291 (480)
Q Consensus       214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gill  291 (480)
                      .+..|+....+..       .|    .+++++.+    .+++++|++|.+.|+...+..    +++++++|+++  |+++
T Consensus       118 l~~~Gi~~~~~d~-------~d----~~~~~~~i----~~~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~  178 (391)
T d1cl1a_         118 LSKLGVTTSWFDP-------LI----GADIVKHL----QPNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAII  178 (391)
T ss_dssp             GGGGTCEEEEECT-------TC----GGGGGGTC----CTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEE
T ss_pred             ccccccccccccC-------cc----cccccccc----ccccceeeecccCcccccccc----cHHHHHHHHhccCCcEE
Confidence            1122444332211       12    23454444    357999999999888876665    99999999875  9999


Q ss_pred             EEcccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCHHHHHhhcCCCccccCCCcHHHHHHHHHH
Q 011669          292 IADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV  367 (480)
Q Consensus       292 I~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a~  367 (480)
                      |+|......       ..+.-.....|++  +.+|.++| | .-.|.++.+++..+.+.......--..+|..+...+..
T Consensus       179 vVDnT~atP-------~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rg  251 (391)
T d1cl1a_         179 MIDNTWAAG-------VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRG  251 (391)
T ss_dssp             EEECTTTTT-------TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             EEeccccch-------hhhcccccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhcc
Confidence            999986521       1222223335655  67799996 4 56677788877666554322111112345555544444


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE------------------eccceeEEEEEecCCCcCCCCHHHH
Q 011669          368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAET  429 (480)
Q Consensus       368 L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~  429 (480)
                      |+.+  .-..++..+....+.+.|    +++|.+..|                  .|.|.++.+.+....     .....
T Consensus       252 l~TL--~lR~~~~~~nA~~vA~~L----~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~-----~~e~~  320 (391)
T d1cl1a_         252 LRTL--GVRLRQHHESSLKVAEWL----AEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEEL  320 (391)
T ss_dssp             HTTH--HHHHHHHHHHHHHHHHHH----HTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHH
T ss_pred             chhH--HHHHHHHHHHHHHHHHHH----HhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCC-----CHHHH
Confidence            4322  112333333444444433    445555443                  344556667764321     11223


Q ss_pred             HHHHHHHH--HcCceeecc---------------------CcCCCEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Q 011669          430 LYIMDKMK--EMGVLVGKG---------------------GFYGNVFRITPPLCFTKEDADYLVDVMDYSLSKM  480 (480)
Q Consensus       430 ~~~~~~l~--~~Gv~v~~~---------------------~~~~~~iRi~p~~~~t~~~id~~l~~l~~~l~~~  480 (480)
                      .++.+.|.  ..++-++..                     +..++.|||+..+    |+++.+++-|+++|+++
T Consensus       321 ~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         321 ANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFARI  390 (391)
T ss_dssp             HHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCcceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            33443332  112222100                     1123679999654    56777788888877753

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.30  E-value=7.1e-11  Score=115.78  Aligned_cols=308  Identities=15%  Similarity=0.087  Sum_probs=178.9

Q ss_pred             HHHHHHHHHHHHhccccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcC-CceEEEEcCCccc
Q 011669          118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG-CNDIISLRNAYHG  196 (480)
Q Consensus       118 p~v~~A~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~-~~~ii~~~~~yhG  196 (480)
                      ++-.+++.+.++..+.+    .-+...+|.++|++.++  .+.+++++|||.|+.+|++......+ ++.||+..-+|..
T Consensus        12 ~~~~~~v~~~l~~~~~~----~G~~v~~fE~~~~~~~g--~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a   85 (371)
T d2fnua1          12 KEDKKAVLEVLNSKQLT----QGKRSLLFEEALCEFLG--VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVA   85 (371)
T ss_dssp             HHHHHHHHHHHTSSCCS----SSHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTH
T ss_pred             HHHHHHHHHHHcCCCcc----CCHHHHHHHHHHHHHHC--cCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccc
Confidence            55677888888665332    23678899999999994  46889999999999999986544333 3468887666654


Q ss_pred             ccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCCh
Q 011669          197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY  276 (480)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  276 (480)
                      .....+..             |...+.+..... .+. +    .+++++.+    ..++.+|++-...|   ....    
T Consensus        86 ~~~ai~~~-------------G~~pv~vDi~~~-~~~-~----~~~~~~~~----~~~t~avi~vh~~G---~~~~----  135 (371)
T d2fnua1          86 TANMLLES-------------GYTPVFAGIKND-GNI-D----ELALEKLI----NERTKAIVSVDYAG---KSVE----  135 (371)
T ss_dssp             HHHHHHHT-------------TCEEEECCBCTT-SSB-C----GGGSGGGC----CTTEEEEEEECGGG---CCCC----
T ss_pred             cceeeecc-------------Cccccccccccc-ccc-c----chhhhhhc----cchhhccccccccc---cccc----
Confidence            33333332             222222221111 111 1    12333333    34778888766554   3333    


Q ss_pred             HHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceeeec----cccccCccccccccC-HHHHHhhcCCC--
Q 011669          277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRRN--  349 (480)
Q Consensus       277 l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt~s----K~~g~G~pig~v~~~-~~~~~~l~~~~--  349 (480)
                      ++++.++|+++|+.+|.|.+|+ +|-.    +.-...|..-|+.++|    |.+++|- -|+++++ +++.+.+....  
T Consensus       136 ~~~i~~~~~~~~i~lIEDaaqa-~Ga~----~~~~~~G~~g~~~~~Sf~~~K~l~~g~-GG~i~t~~~~~~~~~~~~~~~  209 (371)
T d2fnua1         136 VESVQKLCKKHSLSFLSDSSHA-LGSE----YQNKKVGGFALASVFSFHAIKPITTAE-GGAVVTNDSELHEKMKLFRSH  209 (371)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTC-TTCE----ETTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBT
T ss_pred             cccccccccccchhhccchhhc-cCce----eccccCCcccccccccccccccccccc-ceEEEeechhhhhhccccccc
Confidence            8999999999999999999997 4321    1122335555666654    8887542 3566665 56666554311  


Q ss_pred             --------------ccccCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceeeE----ecccee-
Q 011669          350 --------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV----RGRGFL-  410 (480)
Q Consensus       350 --------------~~~t~~~~~~~~aaa~a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v----~g~g~~-  410 (480)
                                    .+..+..+.+.++.++..|+.+  +++.++-+++..++.+.|.+    .+.+...    ...... 
T Consensus       210 g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~R~~~~~~y~~~l~~----~~~~~~~~~~~~~~~~~~  283 (371)
T d2fnua1         210 GMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKD----NPYFTPLHPLLKDKSSNH  283 (371)
T ss_dssp             TEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTT----CSSEEESGGGCSSCCCCS
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhhhc--cchhhhhhhhhhhhcccccc----cccccccccccccccccc
Confidence                          1233345677777788777644  34445545555555555544    3322211    111111 


Q ss_pred             -EEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC----------------cC-------CCEEEEeCCCCCCHHHH
Q 011669          411 -LGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG----------------FY-------GNVFRITPPLCFTKEDA  466 (480)
Q Consensus       411 -~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------~~-------~~~iRi~p~~~~t~~~i  466 (480)
                       +.+.+.. .     .......+.+.|.++||-+.+.-                ..       .+.+.|=.....|++|+
T Consensus       284 ~~~i~~~~-~-----~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di  357 (371)
T d2fnua1         284 LYPILMHQ-K-----FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESV  357 (371)
T ss_dssp             CEEEEECG-G-----GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred             cccccccc-c-----chhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHH
Confidence             2222211 1     11123568889999999775320                00       12344322233599999


Q ss_pred             HHHHHHHHHHHhh
Q 011669          467 DYLVDVMDYSLSK  479 (480)
Q Consensus       467 d~~l~~l~~~l~~  479 (480)
                      +..++.|.+++++
T Consensus       358 ~~I~~~i~~~~~~  370 (371)
T d2fnua1         358 QNIAHSVLKTFES  370 (371)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999998864

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.26  E-value=6.2e-10  Score=108.78  Aligned_cols=226  Identities=14%  Similarity=0.052  Sum_probs=137.1

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +.+.+..+|....|+++|+++-++  +..+.++||..|+..++.....  +++.|++.+..|.| +...+...       
T Consensus        51 ~~YsR~~nPT~~~le~~la~LEg~--~~a~~~sSGmaAi~~~~l~l~~--~gd~vv~~~~~yg~-t~~~~~~~-------  118 (394)
T d1e5ea_          51 YIYTRLGNPTVSNLEGKIAFLEKT--EACVATSSGMGAIAATVLTILK--AGDHLISDECLYGC-THALFEHA-------  118 (394)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHH-HHHHHHTH-------
T ss_pred             ceecCCCCHHHHHHHHHHHHHhCC--cceeeeccchHHHHHHHHhhcc--cccccccccceeeh-hhHhHHHH-------
Confidence            444566799999999999998753  5678889999999988764433  67778777777744 33222211       


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHH-hCCEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AGGLC  291 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~gill  291 (480)
                       .+..|+....+..       .|    .++++++++    +++++|++|.+.|+...+..    ++++.+++++ +|+++
T Consensus       119 -~~~~gi~~~~~d~-------~d----~~~~~~~i~----~~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~v  178 (394)
T d1e5ea_         119 -LTKFGIQVDFINT-------AI----PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLV  178 (394)
T ss_dssp             -HHHTTCEEEEECT-------TS----TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEE
T ss_pred             -hhccceeeeccCC-------CC----HHHHHHhhc----ccccEEEEeccCCcceeeeh----hhhhhhccccccCeEE
Confidence             1112443332211       12    346777774    47899999998888877765    8888886664 78999


Q ss_pred             EEcccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCHHHHHhhcCCCccccCC--CcHHHHHHHH
Q 011669          292 IADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFG--GNPVCTAAGH  365 (480)
Q Consensus       292 I~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~~~t~~--~~~~~~aaa~  365 (480)
                      |+|.....-       ..++-.....|||  +.+|-++| + .-.|.++++++..........-..++  .+|..+...+
T Consensus       179 vvDnT~atP-------~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~  251 (394)
T d1e5ea_         179 IADNTFCSP-------MITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLIT  251 (394)
T ss_dssp             EEECTTTCT-------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHH
T ss_pred             EecCcccCc-------ccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHH
Confidence            999986421       1223233344666  67899986 4 66778888888665443211112222  3466655555


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHhcCceee
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD  403 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  403 (480)
                      ..|+.+.  -..++..++...+.+.|+    .+|.+..
T Consensus       252 rgl~TL~--lRm~r~~~nA~~lA~~L~----~hp~V~~  283 (394)
T d1e5ea_         252 RGLSTLN--IRMKAESENAMKVAEYLK----SHPAVEK  283 (394)
T ss_dssp             HHHTTHH--HHHHHHHHHHHHHHHHHH----TCTTEEE
T ss_pred             hhchhHH--HHHHHHHHHHHHHHHHHh----hcCCccE
Confidence            5444321  123344444444444444    4454433

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.24  E-value=2.1e-10  Score=109.82  Aligned_cols=226  Identities=14%  Similarity=0.021  Sum_probs=136.7

Q ss_pred             HHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCeeEecC
Q 011669          145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN  224 (480)
Q Consensus       145 ~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~  224 (480)
                      .|.++|+++.++  +..+.++||..|+..++.....  .++.||+.+..|.|.....-..         .+..|+....+
T Consensus         2 aLE~~la~Leg~--~~a~~~sSGMaAi~~~l~~ll~--~Gd~iv~~~~~Yg~t~~~~~~~---------l~~~gi~~~~~   68 (331)
T d1pffa_           2 ALEGKIAKLEHA--EACAATASGMGAIAASVWTFLK--AGDHLISDDCLYGCTHALFEHQ---------LRKFGVEVDFI   68 (331)
T ss_dssp             HHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHHHTH---------HHHTTCEEEEE
T ss_pred             HHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHH---------HHhcCeEEEEe
Confidence            477888888743  5678889999999988865433  6788999999996643322211         11234443322


Q ss_pred             CCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHH-HHhCCEEEEcccccCcccc
Q 011669          225 PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFART  303 (480)
Q Consensus       225 p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~-~~~gillI~DEv~tgfgr~  303 (480)
                      +.       .|    .+.++++++    ++++.|++|.+.|+...+..    ++.+.+++ +++|+++|+|......   
T Consensus        69 d~-------~d----~~~~~~~i~----~~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp---  126 (331)
T d1pffa_          69 DM-------AV----PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP---  126 (331)
T ss_dssp             CT-------TS----TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH---
T ss_pred             cc-------cc----hhhHhhhcc----cccceeeeeccccccccccc----chhhhhhhhcccCceEEeecccccc---
Confidence            11       12    345666653    48899999998888876665    88888875 6789999999986522   


Q ss_pred             CCCcccccccCCCccee--eecccccc-C-ccccccccCHHHHHhhcCCCccc--cCCCcHHHHHHHHHHHHHhhhhHHH
Q 011669          304 GSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFN--TFGGNPVCTAAGHAVLKVIQKDKLQ  377 (480)
Q Consensus       304 G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~~~~~~l~~~~~~~--t~~~~~~~~aaa~a~L~~i~~~~~~  377 (480)
                          +.+.......|++  +.+|.++| | .-.|+++++++............  --..+|..+...+..|+.+.  -..
T Consensus       127 ----~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~--~Rm  200 (331)
T d1pffa_         127 ----ILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLD--MRV  200 (331)
T ss_dssp             ----HHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHH--HHH
T ss_pred             ----ccccccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHH--HHH
Confidence                2223223335666  67799986 4 56678888876554432211111  12235676666666665432  223


Q ss_pred             HHHHHHHHHHHHHHHHhHHhcCceee------------------EeccceeEEEEE
Q 011669          378 NNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEF  415 (480)
Q Consensus       378 ~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~  415 (480)
                      ++..++...+.+.|+    .+|.+..                  ..+.|.++.+++
T Consensus       201 ~~~~~nA~~lA~~L~----~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l  252 (331)
T d1pffa_         201 KRAAENAQKVAEFLH----EHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDV  252 (331)
T ss_dssp             HHHHHHHHHHHHHHH----HCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEEC
T ss_pred             HHHHHHHHHHHHhhh----hCCcEEeeccccccCccHHHHHhhcccccCcccceee
Confidence            334444444444443    3444432                  235577777777

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=1.1e-09  Score=106.84  Aligned_cols=214  Identities=16%  Similarity=0.099  Sum_probs=132.1

Q ss_pred             ccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccc
Q 011669          135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV  214 (480)
Q Consensus       135 ~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  214 (480)
                      +.+..+|....|+++|+++.++  +..+.++||..|+..++. +  ...++.||+....|.|........         .
T Consensus        49 YsR~gnPT~~~lE~~la~LE~~--~~a~~~sSGmaAi~~~l~-~--l~~gd~iv~~~~~yg~t~~~~~~~---------l  114 (393)
T d1n8pa_          49 YSRSQNPNRENLERAVAALENA--QYGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKV---------A  114 (393)
T ss_dssp             BTTTCCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHT---------S
T ss_pred             eeCCCChHHHHHHHHHHHHhCC--ceEEEecCchhHHHhhhh-c--ccCCCeeeeeeeecccchhhhhhh---------h
Confidence            4566789999999999999853  567889999888754432 2  235678999999996644332221         1


Q ss_pred             cCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHH----HhCCE
Q 011669          215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK----KAGGL  290 (480)
Q Consensus       215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~----~~gil  290 (480)
                      +..|+....+.        .+    .++++++++    +++++|++|.+-|+...+..    +++|+++|+    ++|++
T Consensus       115 ~~~gi~~~~~~--------~~----~~~~~~~i~----~~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~  174 (393)
T d1n8pa_         115 NAHGVETSFTN--------DL----LNDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVI  174 (393)
T ss_dssp             TTTCSCCEEES--------SH----HHHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCE
T ss_pred             hcccceeEEee--------cc----hHHHHHHhh----hhcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCce
Confidence            11233222111        01    356777764    58999999999888877766    999999999    67899


Q ss_pred             EEEcccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccC-HHHHHhhcCCCccccCCCcHHHHHHHH
Q 011669          291 CIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGH  365 (480)
Q Consensus       291 lI~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~  365 (480)
                      +|+|.....       +..+.......|||  +.+|.++| | .-.|+++.+ +++.+.+........-..+|..+...+
T Consensus       175 lvVDnT~at-------P~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~  247 (393)
T d1n8pa_         175 LVVDNTFLS-------PYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTH  247 (393)
T ss_dssp             EEEECTTTH-------HHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             EEEecCccC-------cccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHH
Confidence            999998642       11222222335665  67799986 4 666776654 566666653221112234566666555


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011669          366 AVLKVIQKDKLQNNAHVVGSYLKERL  391 (480)
Q Consensus       366 a~L~~i~~~~~~~~~~~~~~~l~~~L  391 (480)
                      ..|+.+.  -..++..++...+.+.|
T Consensus       248 rgl~Tl~--lR~~~~~~nA~~lA~~L  271 (393)
T d1n8pa_         248 RGLKTLH--LRVRQAALSANKIAEFL  271 (393)
T ss_dssp             HHHTTHH--HHHHHHHHHHHHHHHHH
T ss_pred             hCCcchh--hHHHHHHHHHHHHHHHH
Confidence            5554331  22333444444444444

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.20  E-value=5.4e-10  Score=109.79  Aligned_cols=170  Identities=20%  Similarity=0.214  Sum_probs=116.1

Q ss_pred             ccccccCChHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccc
Q 011669          133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF  212 (480)
Q Consensus       133 ~~~~~~~~~~~~~l~e~L~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  212 (480)
                      +.+.+..++....|+++|+++-++  +..+.++||..|+..++.....  .++.||+.+..|+|........        
T Consensus        50 ~~YsR~~nPT~~~LE~~la~LE~~--~~a~~~~SGmaAi~~~~~~l~~--~gd~il~~~~~Yg~t~~l~~~~--------  117 (421)
T d2ctza1          50 NIYSRIMNPTVDVLEKRLAALEGG--KAALATASGHAAQFLALTTLAQ--AGDNIVSTPNLYGGTFNQFKVT--------  117 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--TTCEEEECSCCCHHHHHHHHTH--------
T ss_pred             ceecCCCCHHHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHhhcc--cccceeecCCcCCchhHHHHHH--------
Confidence            445667799999999999999853  5688999999999888865443  6789999999997644332211        


Q ss_pred             cccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEE
Q 011669          213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI  292 (480)
Q Consensus       213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  292 (480)
                       .+..|+....+..       .+.   .+..++.+    .+++++|++|.+.|+...++.    +++|+++|+++|+++|
T Consensus       118 -~~~~gi~~~~~d~-------~~~---~~~~~~~~----~~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~v  178 (421)
T d2ctza1         118 -LKRLGIEVRFTSR-------EER---PEEFLALT----DEKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALI  178 (421)
T ss_dssp             -HHHTTCEEEECCT-------TCC---HHHHHHHC----CTTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEE
T ss_pred             -Hhhccccceeccc-------ccC---cchhcccc----CCCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceE
Confidence             1123444433221       110   23444444    358999999999999887776    9999999999999999


Q ss_pred             EcccccCccccCCCcccccccCCCccee--eecccccc-C-ccccccccCH
Q 011669          293 ADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTTP  339 (480)
Q Consensus       293 ~DEv~tgfgr~G~~~~~~~~~~~~pDiv--t~sK~~g~-G-~pig~v~~~~  339 (480)
                      +|.....   +   +..+.......|++  +.+|-++| | .=.|.|+.+.
T Consensus       179 vDnT~a~---t---P~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~  223 (421)
T d2ctza1         179 VDNTFGM---G---GYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGG  223 (421)
T ss_dssp             EECGGGG---G---GTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred             ecccccc---c---ceeccccccCCcEEEEechhhccCCCCeEEEEEEcCC
Confidence            9998641   1   11122223345666  67899996 4 5556666543

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=1.5e-08  Score=98.10  Aligned_cols=323  Identities=15%  Similarity=0.122  Sum_probs=178.3

Q ss_pred             CCCHHHHHHHHHHHHh-cc--ccccccC--C---hHHHHHHHHHHH-hCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCc
Q 011669          115 HCHPYVVDSIVNQIKR-IQ--HSTVLYL--N---HAIADFAEALAS-KMPGNLKVVFFTNSGTEANELAIMMARLYTGCN  185 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~-~~--~~~~~~~--~---~~~~~l~e~L~~-~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~  185 (480)
                      +..|.|.+++..-+.. +.  +...+|.  .   +.++.++.+.+. .++.....| -..||+.||.+++.....  +++
T Consensus        37 ~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anV-qp~SGs~AN~av~~All~--pGD  113 (416)
T d1dfoa_          37 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANV-QPHSGSQANFAVYTALLE--PGD  113 (416)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHHCC--TTC
T ss_pred             cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCccee-ecccCccHHHHHHHHhcC--CCC
Confidence            4568888887654432 11  1111122  2   344555544444 455433333 458999999988876543  788


Q ss_pred             eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCC
Q 011669          186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQG  265 (480)
Q Consensus       186 ~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~  265 (480)
                      +|+..+... |.....-...       .........++++....+.  .|    .+++++..+..   +.+.||+-..  
T Consensus       114 ~Il~l~l~~-GGHlshg~~~-------~~~g~~~~~~~y~~d~~~~--ID----yd~l~~~a~~~---kPklIi~G~S--  174 (416)
T d1dfoa_         114 TVLGMNLAH-GGHLTHGSPV-------NFSGKLYNIVPYGIDATGH--ID----YADLEKQAKEH---KPKMIIGGFS--  174 (416)
T ss_dssp             EEEEECTTT-TCCGGGTCTT-------SHHHHHSEEEEECBCSSSS--BC----HHHHHHHHHHH---CCSEEEEECS--
T ss_pred             eeeeccccc-cccccccccc-------cccCceEEEEecccCCccC--cc----HHHHHHHHHHh---ccceEEeccc--
Confidence            898886543 3332211110       0000011222222111111  23    67787777653   5667776532  


Q ss_pred             CCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec--cccccCccccccccC---H
Q 011669          266 VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTT---P  339 (480)
Q Consensus       266 ~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~---~  339 (480)
                          ..+-+--+++++++|++.|+++++|..|. |+--.|  .+. +-.. ..|++|.+  |+|.|. |-|.++.+   +
T Consensus       175 ----~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g--~~~-sP~~-~aDvvt~tThKtlrGP-rggiI~~~~~~~  245 (416)
T d1dfoa_         175 ----AYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAG--VYP-NPVP-HAHVVTTTTHKTLAGP-RGGLILAKGGSE  245 (416)
T ss_dssp             ----SCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHT--SSC-CCTT-TSSEEEEESSSTTCCC-SCEEEEESSCCH
T ss_pred             ----ccccccCHHHHHHHHHhcCceEEcchhhhhcceecc--ccC-Cccc-ccceeeeehhhcccCC-CceEEEeccchH
Confidence                12223338999999999999999999874 443223  111 1122 24888655  888753 55667764   5


Q ss_pred             HHHHhhcCCCccccCCCcHHHHHHHH-HHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEE
Q 011669          340 EIAEVLTRRNYFNTFGGNPVCTAAGH-AVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF  415 (480)
Q Consensus       340 ~~~~~l~~~~~~~t~~~~~~~~aaa~-a~L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~  415 (480)
                      ++.+.+....+.+..+++-....|+. .++.....   .++.+++.++.+.|.+.|.+.  .+.++..- -...++.+++
T Consensus       246 ~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~--G~~iv~gg-TdnHlvlvdl  322 (416)
T d1dfoa_         246 ELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER--GYKVVSGG-TDNHLFLVDL  322 (416)
T ss_dssp             HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGGGS-CSSSEEEEEC
T ss_pred             hHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC--CcccccCC-CCCceeEEEe
Confidence            77777765554455555544444433 33443322   246666777777777777664  22222100 1234566776


Q ss_pred             ecCCCcCCCCHHHHHHHHHHHHHcCceeeccC--------cCCCEEEEeCCCC----CCHHHHHHHHHHHHHHHh
Q 011669          416 VTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG--------FYGNVFRITPPLC----FTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~~----~t~~~id~~l~~l~~~l~  478 (480)
                      .+...       ....+.+.|.+.||.+-...        ...+-|||.-|..    ..++|++++.+.|.++++
T Consensus       323 ~~~~~-------~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~  390 (416)
T d1dfoa_         323 VDKNL-------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLD  390 (416)
T ss_dssp             GGGTC-------CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccCC-------CHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            43221       13556667778899885321        1135699986643    467999999988888875

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.00  E-value=1.4e-08  Score=97.76  Aligned_cols=322  Identities=13%  Similarity=0.133  Sum_probs=181.0

Q ss_pred             CCCHHHHHHHHHHHHh-cc--ccccccC--C---hHHHHHHHHH-HHhCCCCCCEEEEeCCHHHHHHHHHHHHHhhcCCc
Q 011669          115 HCHPYVVDSIVNQIKR-IQ--HSTVLYL--N---HAIADFAEAL-ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN  185 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~-~~--~~~~~~~--~---~~~~~l~e~L-~~~~~~~~~~v~f~~sGseA~~~Alk~ar~~~~~~  185 (480)
                      ...|.|.+++..-+.. +.  +...+|.  .   +.+++++.+. .+.++...-.| =..||+.||.++......  +++
T Consensus        34 ~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anV-qp~SGs~An~av~~all~--pGD  110 (405)
T d1kl1a_          34 FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANV-QPHSGAQANMAVYFTVLE--HGD  110 (405)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEEC-CCSSHHHHHHHHHHHHCC--TTC
T ss_pred             cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCccee-eccCchHHHHHHHHHhcC--CCC
Confidence            3468888887665532 21  1111221  2   3334445333 44554433332 456999999888876544  788


Q ss_pred             eEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCC
Q 011669          186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQG  265 (480)
Q Consensus       186 ~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~  265 (480)
                      +|+.++...-|+........        ........+.++.... .+.-|    .++++++++..   +++.||+-..  
T Consensus       111 ~im~l~l~~GGHlshg~~~~--------~~g~~~~~~~y~~d~~-~~~ID----~d~l~~~a~~~---kPklIi~G~S--  172 (405)
T d1kl1a_         111 TVLGMNLSHGGHLTHGSPVN--------FSGVQYNFVAYGVDPE-THVID----YDDVREKARLH---RPKLIVAAAS--  172 (405)
T ss_dssp             EEEEECGGGTCCGGGTCTTS--------HHHHHSEEEEECBCTT-TCSBC----HHHHHHHHHHH---CCSEEEECCS--
T ss_pred             EEEEeecccccccccCcccc--------ccceEEEEEEeccchh-ccccc----HHHHHHHHHhh---CcceEEeccc--
Confidence            99888644422221111000        0000122222221110 11123    67788777754   5677877442  


Q ss_pred             CCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec--cccccCccccccccCHHHH
Q 011669          266 VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIA  342 (480)
Q Consensus       266 ~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~~~~  342 (480)
                          ..+-+--+++++++|++.|++|++|-.|. |+--.|  .+. +-.+ ..|++|++  |.|.|. |-|.++.++++.
T Consensus       173 ----~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g--~~~-~P~~-~aDvvt~tThKtlrGP-rgg~I~~~~~~~  243 (405)
T d1kl1a_         173 ----AYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAG--LHP-NPVP-YAHFVTTTTHKTLRGP-RGGMILCQEQFA  243 (405)
T ss_dssp             ----SCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTT--SSC-CSTT-TCSEEEEESSSTTCCC-SCEEEEECHHHH
T ss_pred             ----ccccccChHHHHHHHhhhCCEEecchhhHhhhhhhh--hcC-Chhh-hhhheeccccccccCC-CCceEEecchhH
Confidence                22333338999999999999999998874 443233  221 1122 35888776  888653 667888999988


Q ss_pred             HhhcCCCccccCCCcHHHHHHHHHH-HHHhhh---hHHHHHHHHHHHHHHHHHHHhHHhcCceeeEec--cceeEEEEEe
Q 011669          343 EVLTRRNYFNTFGGNPVCTAAGHAV-LKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG--RGFLLGVEFV  416 (480)
Q Consensus       343 ~~l~~~~~~~t~~~~~~~~aaa~a~-L~~i~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g--~g~~~~i~~~  416 (480)
                      +.+....+-+..+++-+...|++++ +.....   .++.+++.++.+.|.+.|.+.  .+.++   .|  ...++++++.
T Consensus       244 ~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~--G~~vv---~ggTd~H~vlvdl~  318 (405)
T d1kl1a_         244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTLV---SGGTDNHLLLVDLR  318 (405)
T ss_dssp             HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEG---GGSCSSSEEEEECG
T ss_pred             HHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC--Cceee---cCCCccceeecccc
Confidence            8887665555566554444444432 332222   245666666777777766654  22222   22  2346667664


Q ss_pred             cCCCcCCCCHHHHHHHHHHHHHcCceeeccC--------cCCCEEEEeCCCC----CCHHHHHHHHHHHHHHHh
Q 011669          417 TDRQLKTPAKAETLYIMDKMKEMGVLVGKGG--------FYGNVFRITPPLC----FTKEDADYLVDVMDYSLS  478 (480)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~~----~t~~~id~~l~~l~~~l~  478 (480)
                      ....       ......+.|.+.||.+-...        ...+-|||.-|..    ..++|+.++.+.|.++++
T Consensus       319 ~~~~-------~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~  385 (405)
T d1kl1a_         319 PQQL-------TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK  385 (405)
T ss_dssp             GGTC-------CHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             ccCC-------cHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            3221       13444556778899886321        1125699986643    577999999999988875

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=2.9e-08  Score=97.74  Aligned_cols=288  Identities=15%  Similarity=0.110  Sum_probs=166.5

Q ss_pred             hHHHHHHHHHHHhCCCCCCEE-EEeCCHHHHHHHHHHHHHhhcCCceEEEEcCCcccccccccccccCCCccccccCCCe
Q 011669          141 HAIADFAEALASKMPGNLKVV-FFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGV  219 (480)
Q Consensus       141 ~~~~~l~e~L~~~~~~~~~~v-~f~~sGseA~~~Alk~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~  219 (480)
                      ..+.+|-+.|++..+  ++.+ .-...|+.|...++.+++.+++++++++.... |..+.++......        ..|+
T Consensus       108 q~l~e~q~~l~eltG--md~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~-~p~~~~v~~t~a~--------~~g~  176 (437)
T d1wyua1         108 QATFEYQTMIAELAG--LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGV-HPEYRAVLRAYLE--------AVGA  176 (437)
T ss_dssp             HHHHHHHHHHHHHHT--SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTS-CHHHHHHHHHHHH--------HTTC
T ss_pred             HHHHHHHHHHHHhhC--CCccccCchHHHHHHHHHHHHHHhhhccccccccccc-ChHHhhhhhhhcc--------ccee
Confidence            445688889999984  5533 23457999999999999999999888876554 4444444333221        1244


Q ss_pred             eEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccC
Q 011669          220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG  299 (480)
Q Consensus       220 ~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tg  299 (480)
                      ..+..+..-   .+.+    ..+        ..+++++|++...+. -|.+..    ++++.+++++.|+++|.|--...
T Consensus       177 ~vv~v~~~~---~~~~----~~~--------~~~~~Aavmi~~Pnt-~G~~ed----~~~i~~~~h~~G~l~~~~ad~~a  236 (437)
T d1wyua1         177 KLLTLPLEG---GRTP----LPE--------VGEEVGAVVVQNPNF-LGALED----LGPFAEAAHGAGALFVAVADPLS  236 (437)
T ss_dssp             EEEEECCBT---TBCC----CCC--------CCTTEEEEEEESSCT-TSBCCC----HHHHHHHHHHTTCEEEEECCTTG
T ss_pred             eEEeeeccc---ccch----hhh--------hccceeEEEEccccc-cccccc----hHHHHHHhhhccceEEeeechhh
Confidence            444333210   0011    001        145899998876644 465532    89999999999999988754322


Q ss_pred             ccccCCCcccccccCCCcceeee-ccccc-----cCccccccccCHHHHHhhcCCCcc----------------------
Q 011669          300 FARTGSHFWGFEAHGVVPDIVTM-AKGIG-----NGIPLGAVVTTPEIAEVLTRRNYF----------------------  351 (480)
Q Consensus       300 fgr~G~~~~~~~~~~~~pDivt~-sK~~g-----~G~pig~v~~~~~~~~~l~~~~~~----------------------  351 (480)
                      ++  +  +-....+  ..|+++. +|.||     ||-..|++.+++++...+.....+                      
T Consensus       237 l~--~--l~~Pg~~--GaDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhI  310 (437)
T d1wyua1         237 LG--V--LKPPGAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI  310 (437)
T ss_dssp             GG--T--BCCHHHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred             hh--c--ccccccc--ccceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccc
Confidence            21  1  0001112  3466643 35544     455678899998887666432110                      


Q ss_pred             -------ccCCCcHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHhHHhcCceeeEeccceeEEEEEecCCCc
Q 011669          352 -------NTFGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL  421 (480)
Q Consensus       352 -------~t~~~~~~~~aaa~a~L~~i~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~  421 (480)
                             +...++.+....+..-+..+-.+.   ..++...+..|+.++|.++    +.+..+.....|--+.+..+.  
T Consensus       311 rRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~----~g~~~~~~~~~f~ef~v~~~~--  384 (437)
T d1wyua1         311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----PGVRPFTPKPFFNEFALALPK--  384 (437)
T ss_dssp             HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTCEECSCSSBCSEEEEECSS--
T ss_pred             cccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhc----CCeeccCCCCeeeEEEEECCC--
Confidence                   112233333333444444444443   3344555666777766554    222222222222222221111  


Q ss_pred             CCCCHHHHHHHHHHHHHcCceeecc--C-cCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 011669          422 KTPAKAETLYIMDKMKEMGVLVGKG--G-FYGNVFRITPPLCFTKEDADYLVDVMDYSL  477 (480)
Q Consensus       422 ~~~~~~~~~~~~~~l~~~Gv~v~~~--~-~~~~~iRi~p~~~~t~~~id~~l~~l~~~l  477 (480)
                            ....+.+.|+++|+.....  . ...+.+.|+|.=..|++|||+++++|++++
T Consensus       385 ------~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         385 ------DPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             ------CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             ------CHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence                  1567999999999975432  1 124688999988899999999999999874

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.75  E-value=2.8e-07  Score=90.37  Aligned_cols=330  Identities=13%  Similarity=0.075  Sum_probs=170.7

Q ss_pred             CCCHHHHHHHHHHHHh-cc--ccccccC--C---hHHHHHH-HHHHHhCCCCCC--E-EEEeCCHHHHHHHHHHHHHhhc
Q 011669          115 HCHPYVVDSIVNQIKR-IQ--HSTVLYL--N---HAIADFA-EALASKMPGNLK--V-VFFTNSGTEANELAIMMARLYT  182 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~-~~--~~~~~~~--~---~~~~~l~-e~L~~~~~~~~~--~-v~f~~sGseA~~~Alk~ar~~~  182 (480)
                      +..|.|.+|+..-+.. +.  +...+|+  .   +.++.++ ++..+.++.+.+  . -+=..||+.||.+++.....  
T Consensus        42 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~--  119 (470)
T d1rv3a_          42 FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVE--  119 (470)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTC--
T ss_pred             cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcC--
Confidence            4568888887654432 11  1111221  2   2334444 444556654322  1 12345999999998876554  


Q ss_pred             CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc
Q 011669          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES  262 (480)
Q Consensus       183 ~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep  262 (480)
                      ++++|+.++-.- |.....-..++.  .+.......+....++..... ..-|    .+++++..+..   +.+.||+-.
T Consensus       120 pgD~im~~~l~~-GGHlshg~~~~~--~~~~~~~~~~~~~~y~v~~~~-~~ID----yd~l~~~a~~~---kPklIi~G~  188 (470)
T d1rv3a_         120 PHGRIMGLDLPD-GGHLTHGFMTDK--KKISATSIFFESMAYKVNPDT-GYID----YDRLEENARLF---HPKLIIAGT  188 (470)
T ss_dssp             TTCEEEEECGGG-TCCGGGCCBCSS--CBCSHHHHHSEEEEECBCTTT-CSBC----HHHHHHHHHHH---CCSEEEECC
T ss_pred             CCCeEeeecccc-CCcccccccccC--CCcccccceeEeeEEEEeccc-Cccc----HHHHHHHHHhh---CcceEeech
Confidence            788888875332 222111000000  000000001122222211110 0123    67777777653   567788743


Q ss_pred             cCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec--cccccCccccccccCH
Q 011669          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTP  339 (480)
Q Consensus       263 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~  339 (480)
                      .      ..+-+--+++++++|++.|++|++|-.|. |+--.|  .+. +-.. ..|++|.+  |.|.| -|-|.|+.++
T Consensus       189 S------~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g--~~~-sPl~-~aDvvt~tTHKtlrG-PrgGiI~~~~  257 (470)
T d1rv3a_         189 S------CYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAG--VVP-SPFE-HCHVVTTTTHKTLRG-CRAGMIFYRR  257 (470)
T ss_dssp             S------SCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHT--SSC-CGGG-TCSEEEEESSGGGCC-CSCEEEEEEC
T ss_pred             h------hccccCCHHHHHHHHhccCCeEEecchhhhhhcccc--ccC-Chhh-eeeeeeeehhhhccC-CcceEEEEcc
Confidence            2      22333348999999999999999998874 443333  111 1112 24888766  88865 2445566554


Q ss_pred             ---------------HHHHhhcCCCccccCCCcHHHHHHHHH-HHHHhhhhH---HHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          340 ---------------EIAEVLTRRNYFNTFGGNPVCTAAGHA-VLKVIQKDK---LQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       340 ---------------~~~~~l~~~~~~~t~~~~~~~~aaa~a-~L~~i~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                                     ++.+.+....+-+..+++-....||+| ++.....++   +.+++.++.+.|.+.|.+.  .+.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~--G~~v  335 (470)
T d1rv3a_         258 GVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL--GYKI  335 (470)
T ss_dssp             SBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred             ccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC--Ccee
Confidence                           255555544444555555444444443 343333333   4455555555555555543  2222


Q ss_pred             eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------cCCCEEEEeCCCC----CCHHHHHHH
Q 011669          401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------FYGNVFRITPPLC----FTKEDADYL  469 (480)
Q Consensus       401 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~~----~t~~~id~~  469 (480)
                      +..- -...++.+++.....       ....+.+.|.+.||.+-...       ...+-|||.-|..    ..++|+.++
T Consensus       336 ~~gg-TdnHlvlvdl~~~g~-------~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~i  407 (470)
T d1rv3a_         336 VTGG-SDNHLILVDLRSKGT-------DGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKV  407 (470)
T ss_dssp             GGGS-CSSSEEEEEGGGGTC-------CHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHH
T ss_pred             ccCC-CCCceEEEeecccCC-------cHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHH
Confidence            2110 113355666532211       13456666778899885321       1235699986643    577999888


Q ss_pred             HHHHHHHHh
Q 011669          470 VDVMDYSLS  478 (480)
Q Consensus       470 l~~l~~~l~  478 (480)
                      .+.|.++++
T Consensus       408 A~~I~~~l~  416 (470)
T d1rv3a_         408 AHFIHRGIE  416 (470)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887763

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.69  E-value=8.2e-07  Score=86.66  Aligned_cols=330  Identities=12%  Similarity=0.054  Sum_probs=165.5

Q ss_pred             CCCHHHHHHHHHHHHh-cc--cccccc-----CChHHHHHHH-HHHHhCCCCCCE---EEEeCCHHHHHHHHHHHHHhhc
Q 011669          115 HCHPYVVDSIVNQIKR-IQ--HSTVLY-----LNHAIADFAE-ALASKMPGNLKV---VFFTNSGTEANELAIMMARLYT  182 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~-~~--~~~~~~-----~~~~~~~l~e-~L~~~~~~~~~~---v~f~~sGseA~~~Alk~ar~~~  182 (480)
                      +..|.|.+|+..-+.. +.  +...+|     ..+.++.++. +..+.++.+...   -+=..||+.||.+++.....  
T Consensus        38 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~--  115 (463)
T d2a7va1          38 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--  115 (463)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC--
T ss_pred             cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcC--
Confidence            4568888877654432 11  111111     1234455544 445566655441   23567999999888876544  


Q ss_pred             CCceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEEEcc
Q 011669          183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES  262 (480)
Q Consensus       183 ~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi~ep  262 (480)
                      ++++|+..+... |....--..+.  ..+.......+...++.... ....-|    .++++++.+..   +++.||+-.
T Consensus       116 pgD~Im~l~l~~-GGHlshg~~~~--~~~~~~~g~~~~~~~Y~~d~-~~~~ID----yd~~~~~a~~~---kPklIi~G~  184 (463)
T d2a7va1         116 PHDRIMGLDLPD-GGHLTHGYMSD--VKRISATSIFFESMPYKLNP-KTGLID----YNQLALTARLF---RPRLIIAGT  184 (463)
T ss_dssp             SCEECCC----------------------------------CCBCT-TTCSBC----HHHHHHHHHHH---CCSEEEECC
T ss_pred             CCceEEeeccCc-Ccccccccccc--cccccceeeEeeeeeeeccC-CCCcCc----HHHHHHHHhhc---CCceEEecc
Confidence            677887664332 21110000000  00000000011112221100 000013    67788777754   567788743


Q ss_pred             cCCCCcceeCCCChHHHHHHHHHHhCCEEEEccccc-CccccCCCcccccccCCCcceeeec--cccccCccccccccCH
Q 011669          263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTP  339 (480)
Q Consensus       263 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~t-gfgr~G~~~~~~~~~~~~pDivt~s--K~~g~G~pig~v~~~~  339 (480)
                      .      ..+-+--+++++++|++.|++|++|-.|. |+--.|  .+. +-.. ..|++|.+  |.|.|. |-|.|+.++
T Consensus       185 S------~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g--~~~-sP~~-~aDvvt~tTHKTlrGP-rgGiIl~~~  253 (463)
T d2a7va1         185 S------AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAK--VIP-SPFK-HADIVTTTTHKTLRGA-RSGLIFYRK  253 (463)
T ss_dssp             S------SCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTT--SSC-CGGG-TCSEEEEESSGGGCSC-SCEEEEEEC
T ss_pred             c------ccccccCHHHHHHHhhcccceEEechhhhhHHhhhh--hhc-Chhh-hhhhhhchhhhhhcCC-CceEEEEcc
Confidence            2      22333348999999999999999999874 443333  211 1112 24888776  888652 445566654


Q ss_pred             ---------------HHHHhhcCCCccccCCCcHHHHHHHHHH-HHHhhhh---HHHHHHHHHHHHHHHHHHHhHHhcCc
Q 011669          340 ---------------EIAEVLTRRNYFNTFGGNPVCTAAGHAV-LKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGI  400 (480)
Q Consensus       340 ---------------~~~~~l~~~~~~~t~~~~~~~~aaa~a~-L~~i~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~  400 (480)
                                     ++.+.+....+-+..+++-....||+++ +....+.   ++.+++.++.+.|.+.|.+.  .+.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~--G~~v  331 (463)
T d2a7va1         254 GVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--GYSL  331 (463)
T ss_dssp             SEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred             cccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC--CCee
Confidence                           4445554433334455554444444433 3332222   45566666666666666554  2222


Q ss_pred             eeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC-------cCCCEEEEeCCCC----CCHHHHHHH
Q 011669          401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG-------FYGNVFRITPPLC----FTKEDADYL  469 (480)
Q Consensus       401 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~~----~t~~~id~~  469 (480)
                      +..- -...++.+++.....       ....+.+.|.+.||.+....       ...+-|||.-|..    ..++|+.++
T Consensus       332 v~gg-TdnHlvlvdl~~~~~-------~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~i  403 (463)
T d2a7va1         332 VSGG-TDNHLVLVDLRPKGL-------DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRV  403 (463)
T ss_dssp             GGGS-CSSSEEEEECTTTTC-------CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred             ecCC-CCCceeeeeccccCC-------CHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHH
Confidence            2110 112245566532211       24556677888899985421       1234699986643    467888888


Q ss_pred             HHHHHHHHh
Q 011669          470 VDVMDYSLS  478 (480)
Q Consensus       470 l~~l~~~l~  478 (480)
                      .+.|.+++.
T Consensus       404 A~~I~~~l~  412 (463)
T d2a7va1         404 VDFIDEGVN  412 (463)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877663

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.64  E-value=2.3e-06  Score=84.89  Aligned_cols=317  Identities=17%  Similarity=0.195  Sum_probs=172.0

Q ss_pred             CCCHHHHHHHHHHHHhccccccccCC--------hHHHHHHHHHHHhCCCCCCEEE-EeCCHHHHHHHHHHHHHhhc---
Q 011669          115 HCHPYVVDSIVNQIKRIQHSTVLYLN--------HAIADFAEALASKMPGNLKVVF-FTNSGTEANELAIMMARLYT---  182 (480)
Q Consensus       115 h~~p~v~~A~~~~~~~~~~~~~~~~~--------~~~~~l~e~L~~~~~~~~~~v~-f~~sGseA~~~Alk~ar~~~---  182 (480)
                      |-+|.|.+.+.+.   +...+ -|..        ..+-++-..|+++++  ++.+= -...|+.|...|+.+++.++   
T Consensus        76 hy~P~v~~~~~~~---~TaYT-PYQPaEiSQG~LQalfEfQtmi~eLTG--MdvaNaS~yDGatA~aeA~~ma~r~~~~~  149 (471)
T d1wyub1          76 KYNPKLHEEAARL---FADLH-PYQDPRTAQGALRLMWELGEYLKALTG--MDAITLEPAAGAHGELTGILIIRAYHEDR  149 (471)
T ss_dssp             CCCCHHHHHHHHT---TSSCC-TTSCGGGCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCcchhhhHHHH---HhccC-CCCCHHHHHHHHHHHHHHHHHHHHHhC--CCccccccchHHHHHHHHHHHHHHHhhhc
Confidence            6678998887642   21111 1221        234678888999984  55321 12478888888887776553   


Q ss_pred             C---CceEEEEcCCcccccccccccccCCCccccccCCCeeEecCCCCcCCCCCCChHHHHHHHHHHHHccCCCceEEEE
Q 011669          183 G---CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL  259 (480)
Q Consensus       183 ~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a~vi  259 (480)
                      +   ...++...+.+|..........            +...+..+....+.  .+    .+.++...    .+++++++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~----~~~~~~~~----~~~~a~v~  207 (471)
T d1wyub1         150 GEGRTRRVVLVPDSAHGSNPATASMA------------GYQVREIPSGPEGE--VD----LEALKREL----GPHVAALM  207 (471)
T ss_dssp             TCTTTCCEEEEETTSCTHHHHHHHHT------------TCEEEEECBCTTSS--BC----HHHHHHHC----STTEEEEE
T ss_pred             ccccccccccCCcccccceeeeeecc------------cceeeccccccccc--cc----chhhhhhh----hcccccee
Confidence            1   1234455555554333322221            11222211111110  12    23343333    35788888


Q ss_pred             EcccCCCCcceeCCCChHHHHHHHHHHhCCEEEEcccccCccccCCCcccccccCCCcceee--eccccc-----cCccc
Q 011669          260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIG-----NGIPL  332 (480)
Q Consensus       260 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~tgfgr~G~~~~~~~~~~~~pDivt--~sK~~g-----~G~pi  332 (480)
                      +...+..|+..    +..+++.++++++|..+++|-+.-... .+  +..-.  +..-|+++  .++.+|     ||--+
T Consensus       208 v~~p~~~g~~e----~~~~~~~~~~h~~g~~~~~~~~~~~~~-~~--l~~p~--~~g~div~vg~~q~~G~P~~~GGP~~  278 (471)
T d1wyub1         208 LTNPNTLGLFE----RRILEISRLCKEAGVQLYYDGANLNAI-MG--WARPG--DMGFDVVHLNLHKTFTVPHGGGGPGS  278 (471)
T ss_dssp             ECSSCTTSCCC----TTHHHHHHHHHHHTCEEEEEGGGGGGT-TT--TCCHH--HHTCSEEECCTTTTTCCCCTTSCCCC
T ss_pred             eccCCCccccc----chhhhhHHHHHhccccccccccchhhh-hh--ccccC--cccccccccccccccccccccccccc
Confidence            88777766443    238899999999998888774422110 11  00000  11124443  345554     34568


Q ss_pred             cccccCHHHHHhhcCCC----------------cc---ccCCCcHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHH
Q 011669          333 GAVVTTPEIAEVLTRRN----------------YF---NTFGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKER  390 (480)
Q Consensus       333 g~v~~~~~~~~~l~~~~----------------~~---~t~~~~~~~~aaa~a~L~~i~~~~---~~~~~~~~~~~l~~~  390 (480)
                      |++..+++++..+..+.                |.   ...+++.+...++...+..+-.++   +.+....+..|+.++
T Consensus       279 G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~  358 (471)
T d1wyub1         279 GPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKEL  358 (471)
T ss_dssp             CCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHH
Confidence            89999999887665321                11   112233444444444455554443   456667777888888


Q ss_pred             HHHhHHhcCceeeEeccceeEEEEEecCCCcCCCCHHHHHHHHHHHHHcCceeeccC---cCCCEEEEeCCCCCCHHHHH
Q 011669          391 LTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKEMGVLVGKGG---FYGNVFRITPPLCFTKEDAD  467 (480)
Q Consensus       391 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~iRi~p~~~~t~~~id  467 (480)
                      |+..  .+..   ......|--+.+ ..     +.......+.+.|++.|++-....   ...+.+.|++-=..|++|||
T Consensus       359 L~~~--G~~~---~~~~~ff~EFvv-~~-----~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID  427 (471)
T d1wyub1         359 LKEK--GYRV---PYDGPSMHEFVA-QP-----PEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLE  427 (471)
T ss_dssp             HHHT--TCBC---SSCSSCCSCEEE-BC-----STTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHH
T ss_pred             Hhhc--Ccee---ccCcceeeEEee-cC-----CCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHH
Confidence            7542  2221   111122222222 11     111124568889999998753221   12467888887789999999


Q ss_pred             HHHHHHHHHHhh
Q 011669          468 YLVDVMDYSLSK  479 (480)
Q Consensus       468 ~~l~~l~~~l~~  479 (480)
                      .++++|++++++
T Consensus       428 ~lv~aL~~i~~e  439 (471)
T d1wyub1         428 AFAEAMGALLKK  439 (471)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875