Citrus Sinensis ID: 011677
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 479 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZW34 | 475 | Cytosolic enolase 3 OS=Ar | yes | no | 0.985 | 0.993 | 0.767 | 0.0 | |
| O02654 | 434 | Enolase OS=Doryteuthis pe | N/A | no | 0.874 | 0.965 | 0.541 | 1e-135 | |
| P13929 | 434 | Beta-enolase OS=Homo sapi | yes | no | 0.883 | 0.974 | 0.571 | 1e-135 | |
| P09104 | 434 | Gamma-enolase OS=Homo sap | no | no | 0.883 | 0.974 | 0.562 | 1e-135 | |
| O57391 | 434 | Gamma-enolase OS=Gallus g | yes | no | 0.885 | 0.976 | 0.554 | 1e-135 | |
| P17183 | 434 | Gamma-enolase OS=Mus musc | yes | no | 0.883 | 0.974 | 0.559 | 1e-135 | |
| P15429 | 434 | Beta-enolase OS=Rattus no | yes | no | 0.883 | 0.974 | 0.566 | 1e-134 | |
| P21550 | 434 | Beta-enolase OS=Mus muscu | no | no | 0.883 | 0.974 | 0.566 | 1e-134 | |
| Q3ZC09 | 434 | Beta-enolase OS=Bos tauru | no | no | 0.883 | 0.974 | 0.566 | 1e-134 | |
| Q27527 | 434 | Enolase OS=Caenorhabditis | yes | no | 0.878 | 0.970 | 0.564 | 1e-133 |
| >sp|Q9ZW34|ENO3_ARATH Cytosolic enolase 3 OS=Arabidopsis thaliana GN=ENO3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/482 (76%), Positives = 408/482 (84%), Gaps = 10/482 (2%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQEYL+KHMLSRKIEDAVNAAVRAK+ DPVLFI+NH++KAV SVITK+KARQILDSRG
Sbjct: 1 MSVQEYLDKHMLSRKIEDAVNAAVRAKTSDPVLFIANHLKKAVSSVITKVKARQILDSRG 60
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDL T+KG+FRASVPSGD SG YEA+ELRDGDKG YLGNSV +AVKNINE+ISEA
Sbjct: 61 IPTVEVDLHTNKGVFRASVPSGDSSGTYEAIELRDGDKGMYLGNSVAKAVKNINEKISEA 120
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+GMDP LQ QIDQAMIDLDKTEKK ELGANAILAVSIAACKAGAAEKEVPL KH++DL+
Sbjct: 121 LIGMDPKLQGQIDQAMIDLDKTEKKSELGANAILAVSIAACKAGAAEKEVPLCKHLSDLS 180
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
G+ N+ LPVPAFTV+SGGKHA N AIQ+IMILPIGAS F EALQ GSETYHHLKAVI+E
Sbjct: 181 GRANMVLPVPAFTVLSGGKHASNTFAIQEIMILPIGASRFEEALQWGSETYHHLKAVISE 240
Query: 241 KYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KWSDCKSSMHNIYSTKYD 299
K G GCNVGEDGGLAP+ISS++EGL+LVKEAINRTG K + ++ + TKYD
Sbjct: 241 KNGGLGCNVGEDGGLAPDISSLKEGLELVKEAINRTGYNDKIKIAIDIAATNFCLGTKYD 300
Query: 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK--SVLQICQQVV 357
LD KSPNKSGQNFKS EDMI+MYKE+C DYPIVSIEDPFDKEDWEHTK S L IC QVV
Sbjct: 301 LDIKSPNKSGQNFKSAEDMIDMYKEICNDYPIVSIEDPFDKEDWEHTKYFSSLGIC-QVV 359
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417
GDDLLMSN KR+ERA L +NQIGTVTEAIEVVK+A D WGVV S
Sbjct: 360 GDDLLMSNSKRVERAIQESSCNALL------LKVNQIGTVTEAIEVVKMARDAQWGVVTS 413
Query: 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
HR GETEDSFI+DLSVGLA+G IKAGAPCRGER KYNQLL IEEELGD A+YAGED++
Sbjct: 414 HRCGETEDSFISDLSVGLATGVIKAGAPCRGERTMKYNQLLRIEEELGDQAVYAGEDWKL 473
Query: 478 CL 479
L
Sbjct: 474 SL 475
|
Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1 |
| >sp|O02654|ENO_DORPE Enolase OS=Doryteuthis pealeii PE=2 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust.
Identities = 242/447 (54%), Positives = 319/447 (71%), Gaps = 28/447 (6%)
Query: 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNS 105
VI K+ +RQI DSRG PTVEVDL+T KGMFRA+VPSG +G+YEALE+RD D Y G +
Sbjct: 2 VIKKVHSRQIFDSRGNPTVEVDLWTDKGMFRAAVPSGASTGIYEALEMRDKDAKNYHGKT 61
Query: 106 VNRAVKNINERISEALVG--MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
+ AV N+N+ I+ ALV MD Q+ +D ++ LD TE K +LGANAIL VS+A CKA
Sbjct: 62 LFNAVGNVNKIIAPALVDKKMDEKDQTAVDNFLLALDGTENKNKLGANAILGVSLAVCKA 121
Query: 164 GAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEA 223
GAA K VPLY+HIADLAG + LPVPAF VI+GG HAGN LA+Q+ MILP GA +F EA
Sbjct: 122 GAAAKGVPLYRHIADLAGNKEVILPVPAFNVINGGSHAGNKLAMQEFMILPTGAKNFTEA 181
Query: 224 LQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG------ 277
++MG+E YHHLK+VI +KYG CNVG++GG APNI +EGL+L+K AI G
Sbjct: 182 MKMGTEVYHHLKSVIKKKYGQDACNVGDEGGFAPNILDNKEGLELLKTAIANAGYTAEIE 241
Query: 278 ----IPSSKWSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVS 333
+ +S++ CK KYDLDFK+P+ + ++ + + + ++YK+ +YP+VS
Sbjct: 242 IGMDVAASEF--CKEK-------KYDLDFKNPDSNPNDWLTSDQLADVYKDFVKNYPVVS 292
Query: 334 IEDPFDKEDWE-HTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN 392
IEDPFD++DWE +TK + Q+VGDDLL++NPKR+++ + A L +N
Sbjct: 293 IEDPFDQDDWEAYTKMTKDMDIQIVGDDLLVTNPKRVQKGIDLKAANALL------LKVN 346
Query: 393 QIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLA 452
QIG+VTE+I+ K++ D WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLA
Sbjct: 347 QIGSVTESIQACKMSQDAGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLA 406
Query: 453 KYNQLLHIEEELGDHAIYAGEDYRQCL 479
KYNQ+L IEEELGD A++AG+ +R L
Sbjct: 407 KYNQILRIEEELGDKAVFAGKKFRNPL 433
|
Loligo pealeii (taxid: 1051067) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P13929|ENOB_HUMAN Beta-enolase OS=Homo sapiens GN=ENO3 PE=1 SV=5 | Back alignment and function description |
|---|
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 248/434 (57%), Positives = 306/434 (70%), Gaps = 11/434 (2%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
+ KI AR+ILDSRG PTVEVDL T KG FRA+VPSG +G+YEALELRDGDKG YLG V
Sbjct: 3 MQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKGRYLGKGV 62
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV+NIN + AL+ + + Q ++D+ MI+LD TE K + GANAIL VS+A CKAG
Sbjct: 63 LKAVENINNTLGPALLQKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAEK VPLY+HIADLAG +L LPVPAF VI+GG HAGN LA+Q+ MILP+GASSF EA+
Sbjct: 123 AAEKGVPLYRHIADLAGNPDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YHHLK VI KYG NVG++GG APNI E L+L+K AI G P
Sbjct: 183 RIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP+ ++ +GE + E+YK +YP+VSIEDPFD++DW
Sbjct: 243 GMDVAASEFYRNGKYDLDFKSPDDPARHI-TGEKLGELYKSFIKNYPVVSIEDPFDQDDW 301
Query: 344 EHTKSVLQ-ICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
S L + Q+VGDDL ++NPKRI +A L +NQIG+VTE+I+
Sbjct: 302 ATWTSFLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLL------LKVNQIGSVTESIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
KLA WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYR 476
LGD AI+AG +R
Sbjct: 416 ALGDKAIFAGRKFR 429
|
Appears to have a function in striated muscle development and regeneration. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P09104|ENOG_HUMAN Gamma-enolase OS=Homo sapiens GN=ENO2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 482 bits (1241), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/434 (56%), Positives = 311/434 (71%), Gaps = 11/434 (2%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I KI AR+ILDSRG PTVEVDL+T KG+FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 3 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 62
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN I+ AL+ G+ + Q ++D M++LD TE K + GANAIL VS+A CKAG
Sbjct: 63 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAE+E+PLY+HIA LAG ++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+
Sbjct: 123 AAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YH LK VI +KYG NVG++GG APNI E L+LVKEAI++ G
Sbjct: 183 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP + + +G+ + +Y++ DYP+VSIEDPFD++DW
Sbjct: 243 GMDVAASEFYRDGKYDLDFKSPTDPSR-YITGDQLGALYQDFVRDYPVVSIEDPFDQDDW 301
Query: 344 EH-TKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
+K + Q+VGDDL ++NPKRIERA L +NQIG+VTEAI+
Sbjct: 302 AAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLL------LKVNQIGSVTEAIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
KLA + WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYR 476
ELGD A +AG ++R
Sbjct: 416 ELGDEARFAGHNFR 429
|
Has neurotrophic and neuroprotective properties on a broad spectrum of central nervous system (CNS) neurons. Binds, in a calcium-dependent manner, to cultured neocortical neurons and promotes cell survival. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|O57391|ENOG_CHICK Gamma-enolase OS=Gallus gallus GN=ENO2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 241/435 (55%), Positives = 314/435 (72%), Gaps = 11/435 (2%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
+ +I AR+ILDSRG PTVEVDL+THKGMFRA+VPSG +G+YEALELRD DK +LG V
Sbjct: 3 VERIHAREILDSRGNPTVEVDLYTHKGMFRAAVPSGASTGIYEALELRDNDKSRFLGKGV 62
Query: 107 NRAVKNINERISEALVG--MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN ++ A+VG + + Q +ID M+++D TE K + GANAIL VS+A CKAG
Sbjct: 63 LQAVDHINSTVAPAIVGSGLSVVDQEKIDNLMLEMDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAEK+VPLY+HIADLAG ++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+
Sbjct: 123 AAEKDVPLYRHIADLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YH+LK+VI EKYG NVG++GG APNI E L+L+KEAI++ G
Sbjct: 183 RIGAEVYHNLKSVIKEKYGKDATNVGDEGGFAPNILENSEALELLKEAIDKAGYTDKIVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP+ + + S +++ ++Y+ YP++SIEDPFD++DW
Sbjct: 243 GMDVAASEFYRDGKYDLDFKSPDDPSR-YISADELGDLYQSFVRAYPVLSIEDPFDQDDW 301
Query: 344 EH-TKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
E +K + Q+VGDDL ++NPKRIERA L +NQIG+VTEAI+
Sbjct: 302 EAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLL------LKVNQIGSVTEAIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
KLA + WGV++SHRSGETED+FIADL V L +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACKLAQENGWGVMVSHRSGETEDTFIADLVVALCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYRQ 477
ELGD A +AG ++R
Sbjct: 416 ELGDEARFAGHNFRN 430
|
Gallus gallus (taxid: 9031) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P17183|ENOG_MOUSE Gamma-enolase OS=Mus musculus GN=Eno2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 481 bits (1237), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/434 (55%), Positives = 312/434 (71%), Gaps = 11/434 (2%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I KI AR+ILDSRG PTVEVDL+T KG+FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 3 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 62
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN RI+ AL+ G+ + Q ++D M++LD TE K + GANAIL VS+A CKAG
Sbjct: 63 LKAVDHINSRIAPALISSGISVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAE+++PLY+HIA LAG ++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+
Sbjct: 123 AAERDLPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YH LK VI +KYG NVG++GG APNI E L+LVKEAI++ G
Sbjct: 183 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKMVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP + + +G+ + +Y++ +YP+VSIEDPFD++DW
Sbjct: 243 GMDVAASEFYRDGKYDLDFKSPADPSR-YITGDQLGALYQDFVRNYPVVSIEDPFDQDDW 301
Query: 344 EH-TKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
+K + Q+VGDDL ++NPKRIERA L +NQIG+VTEAI+
Sbjct: 302 AAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLL------LKVNQIGSVTEAIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
KLA + WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYR 476
ELGD A +AG ++R
Sbjct: 416 ELGDEARFAGHNFR 429
|
Has neurotrophic and neuroprotective properties on a broad spectrum of central nervous system (CNS) neurons. Binds, in a calcium-dependent manner, to cultured neocortical neurons and promotes cell survival. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P15429|ENOB_RAT Beta-enolase OS=Rattus norvegicus GN=Eno3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/434 (56%), Positives = 306/434 (70%), Gaps = 11/434 (2%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
+ KI AR+ILDSRG PTVEVDL T KG FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 3 MQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGV 62
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV++IN+ + AL+ + + Q ++D+ MI+LD TE K + GANAIL VS+A CKAG
Sbjct: 63 LKAVEHINKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAEK VPLY+HIADLAG +L LPVPAF VI+GG HAGN LA+Q+ MILP+GASSF EA+
Sbjct: 123 AAEKGVPLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YHHLK VI KYG NVG++GG APNI E L+L+K AI G P
Sbjct: 183 RIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP+ ++ SGE + E+YK +YP+VSIEDPFD++DW
Sbjct: 243 GMDVAASEFYRNGKYDLDFKSPDDPARHI-SGEKLGELYKSFIKNYPVVSIEDPFDQDDW 301
Query: 344 EHTKSVLQ-ICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
S L + Q+VGDDL ++NPKRI +A L +NQIG+VTE+I+
Sbjct: 302 ATWTSFLSGVDIQIVGDDLTVTNPKRIAQAVEKKACNCLL------LKVNQIGSVTESIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
KLA WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYR 476
LGD A++AG +R
Sbjct: 416 ALGDKAVFAGRKFR 429
|
Appears to have a function in striated muscle development and regeneration. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P21550|ENOB_MOUSE Beta-enolase OS=Mus musculus GN=Eno3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/434 (56%), Positives = 306/434 (70%), Gaps = 11/434 (2%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
+ KI AR+ILDSRG PTVEVDL T KG FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 3 MQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKARYLGKGV 62
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV++IN+ + AL+ + + Q ++D+ MI+LD TE K + GANAIL VS+A CKAG
Sbjct: 63 LKAVEHINKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAEK VPLY+HIADLAG +L LPVPAF VI+GG HAGN LA+Q+ MILP+GASSF EA+
Sbjct: 123 AAEKGVPLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YHHLK VI KYG NVG++GG APNI E L+L+K AI G P
Sbjct: 183 RIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP+ ++ SGE + E+YK +YP+VSIEDPFD++DW
Sbjct: 243 GMDVAASEFYRNGKYDLDFKSPDDPARHI-SGEKLGELYKNFIQNYPVVSIEDPFDQDDW 301
Query: 344 EHTKSVLQ-ICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
S L + Q+VGDDL ++NPKRI +A L +NQIG+VTE+I+
Sbjct: 302 ATWTSFLSGVDIQIVGDDLTVTNPKRIAQAVEKKACNCLL------LKVNQIGSVTESIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
KLA WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYR 476
LGD A++AG +R
Sbjct: 416 ALGDKAVFAGRKFR 429
|
Appears to have a function in striated muscle development and regeneration. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q3ZC09|ENOB_BOVIN Beta-enolase OS=Bos taurus GN=ENO3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/434 (56%), Positives = 305/434 (70%), Gaps = 11/434 (2%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
+ KI AR+ILDSRG PTVEVDL T KG FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 3 MQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGV 62
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV++IN+ + AL+ + + Q ++D+ MI+LD TE K + GANAIL VS+A CKAG
Sbjct: 63 LKAVEHINKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAEK VPLY+HIADLAG L LPVPAF VI+GG HAGN LA+Q+ MILP+GASSF EA+
Sbjct: 123 AAEKGVPLYRHIADLAGNPELILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YHHLK VI KYG NVG++GG APNI E L+L+K AI G P
Sbjct: 183 RIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP+ ++ SGE + E+YK +YP+VSIEDPFD++DW
Sbjct: 243 GMDVAASEFYRNGKYDLDFKSPDDPARHI-SGEKLGELYKNFIKNYPVVSIEDPFDQDDW 301
Query: 344 EHTKSVLQ-ICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
S L + Q+VGDDL ++NPKRI +A L +NQIG+VTE+I+
Sbjct: 302 ATWTSFLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLL------LKVNQIGSVTESIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
KLA WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYR 476
LGD A++AG +R
Sbjct: 416 ALGDKAVFAGRKFR 429
|
Appears to have a function in striated muscle development and regeneration. Bos taurus (taxid: 9913) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q27527|ENO_CAEEL Enolase OS=Caenorhabditis elegans GN=enol-1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/439 (56%), Positives = 307/439 (69%), Gaps = 18/439 (4%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
ITKI ARQI DSRG PTVEVDLFT KG+FRA+VPSG +G++EALELRDGDK +LG V
Sbjct: 3 ITKIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGKGV 62
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV NINE+I+ AL+ G D Q ID M+ LD +E KG LGANAIL VS+A KAG
Sbjct: 63 LKAVSNINEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGNLGANAILGVSLAVAKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
A K +PLYK+IA+LAG + LPVPAF VI+GG HAGN LA+Q+ MILP+GASSF EA+
Sbjct: 123 AVHKGLPLYKYIAELAGTGKVVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFAEAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPS--SK 282
+MGSE YHHLKA I ++YG VG++GG APNI +EGLDL+ AI++ G S
Sbjct: 183 RMGSEVYHHLKAEIKKRYGLDATAVGDEGGFAPNIQDNKEGLDLLNTAIDKAGYTGKISI 242
Query: 283 WSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED 342
D +S KYDLDFK+P + SGE + E+Y+ +YP+VSIED FD++D
Sbjct: 243 GMDVAASEF-FKDGKYDLDFKNPASDSSKWLSGEQLTELYQSFIKEYPVVSIEDAFDQDD 301
Query: 343 WEHTKSVLQICQ-QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSN---LWINQIGTVT 398
W++ Q+VGDDL ++NPKRI+ A + N L +NQIG+VT
Sbjct: 302 WDNWGKFHGATSIQLVGDDLTVTNPKRIQTA---------IDKKSCNCLLLKVNQIGSVT 352
Query: 399 EAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLL 458
E+IE KL+ WGV++SHRSGETED+FIADL VGLA+GQIK GAPCR ERLAKYNQLL
Sbjct: 353 ESIEAAKLSRANGWGVMVSHRSGETEDTFIADLVVGLATGQIKTGAPCRSERLAKYNQLL 412
Query: 459 HIEEELGDHAIYAGEDYRQ 477
IEEELG A+YAG ++R
Sbjct: 413 RIEEELGADAVYAGHNFRN 431
|
Caenorhabditis elegans (taxid: 6239) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 479 | ||||||
| 225434716 | 474 | PREDICTED: cytosolic enolase 3-like [Vit | 0.981 | 0.991 | 0.804 | 0.0 | |
| 118482451 | 474 | unknown [Populus trichocarpa] | 0.979 | 0.989 | 0.795 | 0.0 | |
| 255558844 | 469 | enolase, putative [Ricinus communis] gi| | 0.968 | 0.989 | 0.795 | 0.0 | |
| 449455046 | 483 | PREDICTED: cytosolic enolase 3-like [Cuc | 0.972 | 0.964 | 0.778 | 0.0 | |
| 449510726 | 483 | PREDICTED: LOW QUALITY PROTEIN: cytosoli | 0.972 | 0.964 | 0.775 | 0.0 | |
| 356552302 | 473 | PREDICTED: cytosolic enolase 3-like [Gly | 0.981 | 0.993 | 0.779 | 0.0 | |
| 357495267 | 473 | Enolase [Medicago truncatula] gi|3555192 | 0.981 | 0.993 | 0.779 | 0.0 | |
| 363807618 | 473 | uncharacterized protein LOC100789125 [Gl | 0.981 | 0.993 | 0.777 | 0.0 | |
| 297745964 | 485 | unnamed protein product [Vitis vinifera] | 0.981 | 0.969 | 0.765 | 0.0 | |
| 297822671 | 475 | predicted protein [Arabidopsis lyrata su | 0.985 | 0.993 | 0.767 | 0.0 |
| >gi|225434716|ref|XP_002281136.1| PREDICTED: cytosolic enolase 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/480 (80%), Positives = 418/480 (87%), Gaps = 10/480 (2%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQ+YL+KHMLSRKIEDAVNAAVRAK+ DPVLFISNHM+KAV SVIT++KARQILDSRG
Sbjct: 1 MSVQDYLDKHMLSRKIEDAVNAAVRAKTSDPVLFISNHMKKAVSSVITRVKARQILDSRG 60
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDL+T+KGMFRASVPSG P GMYEA+ELRDGDKGTYLGN V RAV+N+NE+ISEA
Sbjct: 61 IPTVEVDLYTNKGMFRASVPSGTPIGMYEAVELRDGDKGTYLGNGVTRAVRNVNEKISEA 120
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+GMDP LQSQIDQ MIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL+
Sbjct: 121 LIGMDPTLQSQIDQVMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLS 180
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
G++NL LPVPAFTVISGGKHAGN LA Q+IMILPIGA+ F EALQMG+ETYHHLKAVI E
Sbjct: 181 GQSNLFLPVPAFTVISGGKHAGNTLAAQEIMILPIGATRFEEALQMGAETYHHLKAVITE 240
Query: 241 KYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KWSDCKSSMHNIYSTKYD 299
KYGAHGC+VGEDGGLAPNISSIREGLDLVKEAI RTG K + ++ KYD
Sbjct: 241 KYGAHGCHVGEDGGLAPNISSIREGLDLVKEAIGRTGYNEKIKIAIDVAATDFCIGAKYD 300
Query: 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV--LQICQQVV 357
LDFKSPNKSGQNFKSGEDMIEMYKELC DYPIVSIEDPFDKEDWEH ++ L IC QVV
Sbjct: 301 LDFKSPNKSGQNFKSGEDMIEMYKELCNDYPIVSIEDPFDKEDWEHIRNFCGLGIC-QVV 359
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417
GDDLLMSNPKRIERA L +NQ+GTVTEAIEVVKLA D WGVV S
Sbjct: 360 GDDLLMSNPKRIERARRESTCNALL------LKVNQVGTVTEAIEVVKLAKDAHWGVVTS 413
Query: 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
HR GETEDSF+ADLSVGLA+GQIKAGAPCRGERLAKYNQL+ IEEELGD A+YAGED+RQ
Sbjct: 414 HRCGETEDSFLADLSVGLATGQIKAGAPCRGERLAKYNQLIRIEEELGDQAVYAGEDWRQ 473
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118482451|gb|ABK93148.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/479 (79%), Positives = 416/479 (86%), Gaps = 10/479 (2%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQEYL+KH+LSRKIEDAVNAAVRAK+PDPVLFISNHMRKAVPSVITKIK RQILDSRG
Sbjct: 1 MSVQEYLDKHVLSRKIEDAVNAAVRAKTPDPVLFISNHMRKAVPSVITKIKGRQILDSRG 60
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDLFT+KG FRASVPSG +GMYEA+ELRDGDKG YLGNSV RAVKNINE+ISEA
Sbjct: 61 IPTVEVDLFTNKGSFRASVPSGHVTGMYEAVELRDGDKGMYLGNSVTRAVKNINEKISEA 120
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+GMDP LQSQIDQAMIDLDKTEKKGELGANA+LAVSIAACKAGAAEKEVPLYKHI+DL+
Sbjct: 121 LIGMDPTLQSQIDQAMIDLDKTEKKGELGANAMLAVSIAACKAGAAEKEVPLYKHISDLS 180
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
KTN TLPVPAFTVISGGKHAGNNLAI++IMILPIGAS+F EALQMGSETYHHLKAVI E
Sbjct: 181 SKTNPTLPVPAFTVISGGKHAGNNLAIKEIMILPIGASTFEEALQMGSETYHHLKAVIKE 240
Query: 241 KYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KWSDCKSSMHNIYSTKYD 299
KYG GCNVGEDGG +PN+SS++EGL+LVKEAI+RTG K + ++ TKYD
Sbjct: 241 KYGEQGCNVGEDGGFSPNLSSVQEGLNLVKEAISRTGYSEKIKMAIDVAATTFCIGTKYD 300
Query: 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK--SVLQICQQVV 357
LD+K NKSGQNFKSG+DMI+MY+ELCA YPIVSIEDPFD+EDWEH K S L +C QVV
Sbjct: 301 LDYKFQNKSGQNFKSGDDMIKMYEELCAAYPIVSIEDPFDREDWEHVKRFSDLGLC-QVV 359
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417
GDDLLMSN KRIERA L +NQIGTVTEA+EVVKLA D WGVV+S
Sbjct: 360 GDDLLMSNHKRIERAIHESSCTALL------LKVNQIGTVTEALEVVKLAKDAHWGVVVS 413
Query: 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYR 476
HRSGETEDSFIADLS+GLA GQIK GAPCRGERLAKYNQLL IEEELGD A+YAGED+R
Sbjct: 414 HRSGETEDSFIADLSIGLAMGQIKTGAPCRGERLAKYNQLLRIEEELGDQAVYAGEDWR 472
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558844|ref|XP_002520445.1| enolase, putative [Ricinus communis] gi|223540287|gb|EEF41858.1| enolase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/479 (79%), Positives = 412/479 (86%), Gaps = 15/479 (3%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQEYL+KHMLSRKIEDAVNAAVRAK+PDPVLFISNHMRKAVPSVITKIKARQILDSRG
Sbjct: 1 MSVQEYLDKHMLSRKIEDAVNAAVRAKAPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDLFT+KGMFRAS PSGD +GMYEA ELRDGDKGTYLGNSV RAVKN+NE+ISEA
Sbjct: 61 IPTVEVDLFTNKGMFRASTPSGDVTGMYEATELRDGDKGTYLGNSVTRAVKNVNEKISEA 120
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+GMDP LQSQIDQAMIDLD+TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL+
Sbjct: 121 LIGMDPTLQSQIDQAMIDLDRTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLS 180
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
GKTNLT+PVPAFTVISG G+ +++IMILP+ A+ F EALQ+GSETY+HLKAVI E
Sbjct: 181 GKTNLTVPVPAFTVISG--VTGH---MREIMILPVAANRFSEALQIGSETYYHLKAVITE 235
Query: 241 KYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KWSDCKSSMHNIYSTKYD 299
KYG HGCNVGEDGG APNISS+ E LDLVKEAI+RTG K + ++ TKYD
Sbjct: 236 KYGEHGCNVGEDGGFAPNISSVHEALDLVKEAISRTGYNDRIKIAIDVAATAFCTGTKYD 295
Query: 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK--SVLQICQQVV 357
LDFKSPN+SGQNFKSGEDMIEMY+ LCADYPIVSIEDPFDKEDW H K S L +C QVV
Sbjct: 296 LDFKSPNRSGQNFKSGEDMIEMYQTLCADYPIVSIEDPFDKEDWVHIKNFSSLGLC-QVV 354
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417
GD LLMSNPKRIERA L INQIGTVTEA+EVVKLA D WGVV+S
Sbjct: 355 GDRLLMSNPKRIERAIHESTCNALL------LKINQIGTVTEALEVVKLAKDAHWGVVVS 408
Query: 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYR 476
HRSGET+DSFIADLSVGLA+GQIKAGAPCRGERLAKYNQLL IEEELGD IYAGED+R
Sbjct: 409 HRSGETDDSFIADLSVGLATGQIKAGAPCRGERLAKYNQLLRIEEELGDQVIYAGEDWR 467
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455046|ref|XP_004145264.1| PREDICTED: cytosolic enolase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/482 (77%), Positives = 415/482 (86%), Gaps = 16/482 (3%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQEYL+K+MLSRKIE+AVNAAVRAK+PDPVLFISNHM+KA+PSVITKIKARQILDSRG
Sbjct: 9 MSVQEYLDKYMLSRKIEEAVNAAVRAKTPDPVLFISNHMKKAIPSVITKIKARQILDSRG 68
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDL+T+KG+F ASVPSGDP+GMYEA+ELRDGDKGTYLGNSV +AVKNINE+ISEA
Sbjct: 69 IPTVEVDLYTNKGVFHASVPSGDPAGMYEAVELRDGDKGTYLGNSVTKAVKNINEKISEA 128
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+G DP Q +IDQAM DLD TEKKGELGANAILAVSIA C+AGAAEKEVPLYKHIADLA
Sbjct: 129 LIGRDPTQQYEIDQAMKDLDTTEKKGELGANAILAVSIAVCRAGAAEKEVPLYKHIADLA 188
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
GKTNL LPVPAFTV+SGGKHAGNNLAIQ+IMILPIGAS F EAL+MGSET+HHLKAVI E
Sbjct: 189 GKTNLILPVPAFTVLSGGKHAGNNLAIQEIMILPIGASKFEEALKMGSETFHHLKAVITE 248
Query: 241 KYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KWSDCKSSMHNIYSTKYD 299
K+GAHGCN GEDGG APNISS +E LDLV+EAINR G K + ++ + TKYD
Sbjct: 249 KHGAHGCNFGEDGGFAPNISSFKEALDLVEEAINRGGYNERIKIAIDVAATNFCMGTKYD 308
Query: 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK--SVLQICQQVV 357
LDFK+PNKS QNFKSG+DMI+MYKELCADYPIVSIEDPFD+EDW+HTK S L IC QVV
Sbjct: 309 LDFKAPNKSVQNFKSGKDMIDMYKELCADYPIVSIEDPFDREDWDHTKHFSSLGIC-QVV 367
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSN---LWINQIGTVTEAIEVVKLANDVPWGV 414
G DLLMSN KRIERA + N L +NQIGTVTEAIEVVKLA D W V
Sbjct: 368 GGDLLMSNKKRIERA---------IDEFTCNALLLKVNQIGTVTEAIEVVKLAKDAQWAV 418
Query: 415 VISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGED 474
V SHR GET+D+F+ADLSVGL++ QIKAGAPCRGERLAKYNQLL IEEELGD AIYAGED
Sbjct: 419 VASHRCGETDDTFLADLSVGLSTCQIKAGAPCRGERLAKYNQLLRIEEELGDQAIYAGED 478
Query: 475 YR 476
+R
Sbjct: 479 WR 480
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510726|ref|XP_004163743.1| PREDICTED: LOW QUALITY PROTEIN: cytosolic enolase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/482 (77%), Positives = 414/482 (85%), Gaps = 16/482 (3%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQEYL+K+MLSRKIE+AVNAAVRAK+PDPVLFISNHM+KA+PSVITK KARQILDSRG
Sbjct: 9 MSVQEYLDKYMLSRKIEEAVNAAVRAKTPDPVLFISNHMKKAIPSVITKXKARQILDSRG 68
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDL+T+KG+F ASVPSGDP+GMYEA+ELRDGDKGTYLGNSV +AVKNINE+ISEA
Sbjct: 69 IPTVEVDLYTNKGVFHASVPSGDPAGMYEAVELRDGDKGTYLGNSVTKAVKNINEKISEA 128
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+G DP Q +IDQAM DLD TEKKGELGANAILAVSIA C+AGAAEKEVPLYKHIADLA
Sbjct: 129 LIGRDPTQQYEIDQAMKDLDTTEKKGELGANAILAVSIAVCRAGAAEKEVPLYKHIADLA 188
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
GKTNL LPVPAFTV+SGGKHAGNNLAIQ+IMILPIGAS F EAL+MGSET+HHLKAVI E
Sbjct: 189 GKTNLILPVPAFTVLSGGKHAGNNLAIQEIMILPIGASKFEEALKMGSETFHHLKAVITE 248
Query: 241 KYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KWSDCKSSMHNIYSTKYD 299
K+GAHGCN GEDGG APNISS +E LDLV+EAINR G K + ++ + TKYD
Sbjct: 249 KHGAHGCNFGEDGGFAPNISSFKEALDLVEEAINRGGYNERIKIAIDVAATNFCMGTKYD 308
Query: 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK--SVLQICQQVV 357
LDFK+PNKS QNFKSG+DMI+MYKELCADYPIVSIEDPFD+EDW+HTK S L IC QVV
Sbjct: 309 LDFKAPNKSVQNFKSGKDMIDMYKELCADYPIVSIEDPFDREDWDHTKHFSSLGIC-QVV 367
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSN---LWINQIGTVTEAIEVVKLANDVPWGV 414
G DLLMSN KRIERA + N L +NQIGTVTEAIEVVKLA D W V
Sbjct: 368 GGDLLMSNKKRIERA---------IDEFTCNALLLKVNQIGTVTEAIEVVKLAKDAQWAV 418
Query: 415 VISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGED 474
V SHR GET+D+F+ADLSVGL++ QIKAGAPCRGERLAKYNQLL IEEELGD AIYAGED
Sbjct: 419 VASHRCGETDDTFLADLSVGLSTCQIKAGAPCRGERLAKYNQLLRIEEELGDQAIYAGED 478
Query: 475 YR 476
+R
Sbjct: 479 WR 480
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552302|ref|XP_003544507.1| PREDICTED: cytosolic enolase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/480 (77%), Positives = 410/480 (85%), Gaps = 10/480 (2%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQ+YL+KHMLSRK+EDAVNAAVRAK+ DPVLFISNHMRKAV SVITKIKARQILDSRG
Sbjct: 1 MSVQDYLDKHMLSRKLEDAVNAAVRAKTSDPVLFISNHMRKAVQSVITKIKARQILDSRG 60
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDL T+KG+FRASVPSG+ + MYEA+ELRDGDKG YLGN V +AVKNIN++ISEA
Sbjct: 61 IPTVEVDLHTNKGVFRASVPSGNSTSMYEAVELRDGDKGVYLGNGVAKAVKNINDKISEA 120
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+GMDP LQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL+
Sbjct: 121 LIGMDPTLQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLS 180
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
GKT+ TLPVPAFTVISGGKHAG+NLAIQ+IMILPIGAS F EAL+MG+ETYHHLKAVI E
Sbjct: 181 GKTSPTLPVPAFTVISGGKHAGSNLAIQEIMILPIGASKFEEALRMGTETYHHLKAVITE 240
Query: 241 KYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KWSDCKSSMHNIYSTKYD 299
KYGAH CNVGEDGG APNISS RE LDLVKEAI+RTG K + ++ + +YD
Sbjct: 241 KYGAHNCNVGEDGGFAPNISSFREALDLVKEAISRTGYNEKIKIALDVAATNFCIGKRYD 300
Query: 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK--SVLQICQQVV 357
LDF+SP KSGQNFKS EDMIE++KELC++YPIVSIEDPFD+EDWEH K S L IC QVV
Sbjct: 301 LDFQSPQKSGQNFKSAEDMIELFKELCSEYPIVSIEDPFDREDWEHIKHISSLGIC-QVV 359
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417
GDDLLMSN KRIERA L +NQ+GTVTE IEVVKLA + WGVV S
Sbjct: 360 GDDLLMSNAKRIERAITESACNALL------LKVNQVGTVTEVIEVVKLAKEAHWGVVTS 413
Query: 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
HR GET DSFIADLSVGLASG IKAGAPCRGERL KYNQLL IEEELGD A+YA ED+RQ
Sbjct: 414 HRCGETIDSFIADLSVGLASGVIKAGAPCRGERLEKYNQLLRIEEELGDQAVYASEDWRQ 473
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357495267|ref|XP_003617922.1| Enolase [Medicago truncatula] gi|355519257|gb|AET00881.1| Enolase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/480 (77%), Positives = 404/480 (84%), Gaps = 10/480 (2%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQEYL+K+MLSRK+EDAVNAAVRAK+ DPVLFISNHM+K V SVITK+KARQILDSRG
Sbjct: 1 MSVQEYLDKYMLSRKLEDAVNAAVRAKTSDPVLFISNHMKKGVQSVITKVKARQILDSRG 60
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDL+T+K MFRASVPSG+ +GMYEA+ELRDGDKG YLGN V +AVKNINE+ISEA
Sbjct: 61 IPTVEVDLYTNKAMFRASVPSGNSTGMYEAVELRDGDKGVYLGNGVAKAVKNINEKISEA 120
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+GMDP LQSQID AMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL+
Sbjct: 121 LIGMDPTLQSQIDHAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLS 180
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
GKTN LPVPAFTVISGGKHAGNNLAI++IMILPIGAS F EAL+MGSETYHHLKAVI E
Sbjct: 181 GKTNPVLPVPAFTVISGGKHAGNNLAIEEIMILPIGASRFDEALRMGSETYHHLKAVITE 240
Query: 241 KYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KWSDCKSSMHNIYSTKYD 299
K G H CNVGEDGG APN+SS RE LDLVKEAI RTG K + + + +YD
Sbjct: 241 KCGPHNCNVGEDGGFAPNVSSFREALDLVKEAIGRTGYDEKIKIALDVAGTNFCIGKRYD 300
Query: 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK--SVLQICQQVV 357
LDFKSP KSGQNFKS EDMIE+YKELC +YPIVSIEDPFDKEDWEH K S L IC QVV
Sbjct: 301 LDFKSPQKSGQNFKSAEDMIELYKELCTEYPIVSIEDPFDKEDWEHIKYISSLGIC-QVV 359
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417
GDDLLMSN KRIERA L +NQ+GTVTE IEVVK A + WGVV S
Sbjct: 360 GDDLLMSNAKRIERAVTESACNALL------LKVNQVGTVTEVIEVVKQAKEAHWGVVTS 413
Query: 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
HRSGET DSFIADLSVGLA GQIKAGAPCRGERL KYNQLL IEEELGD A+YAGED+RQ
Sbjct: 414 HRSGETVDSFIADLSVGLAVGQIKAGAPCRGERLEKYNQLLRIEEELGDQAVYAGEDWRQ 473
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807618|ref|NP_001242412.1| uncharacterized protein LOC100789125 [Glycine max] gi|255640153|gb|ACU20367.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/480 (77%), Positives = 408/480 (85%), Gaps = 10/480 (2%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQ+YL+KHMLSRK+EDAVNAAVRAK+ DPVLFISNHMRKAV SVITKIKARQILDSRG
Sbjct: 1 MSVQDYLDKHMLSRKLEDAVNAAVRAKTSDPVLFISNHMRKAVQSVITKIKARQILDSRG 60
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDL T+KG+FRASVPSG+ + MYEA+ELRDGDKG YLGN V +AVKNIN++ISEA
Sbjct: 61 IPTVEVDLHTNKGVFRASVPSGNSTSMYEAVELRDGDKGVYLGNGVAKAVKNINDKISEA 120
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+GMDP LQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL+
Sbjct: 121 LIGMDPTLQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLS 180
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
GKT+ TLPVPAFTVISGGKHAG+NLAI +IMILPIGAS F EAL+MG+ETYHHLKAVI E
Sbjct: 181 GKTSPTLPVPAFTVISGGKHAGSNLAIHEIMILPIGASKFEEALRMGTETYHHLKAVITE 240
Query: 241 KYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KWSDCKSSMHNIYSTKYD 299
KYGAH CNVGEDGG APNISS RE LDLVKEAI+R G K + ++ +YD
Sbjct: 241 KYGAHNCNVGEDGGFAPNISSFREALDLVKEAISRAGYDEKIKIALDVAATDFCIGKRYD 300
Query: 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK--SVLQICQQVV 357
LDF+SP KSGQNFKS EDMI++YKELC++YPIVSIEDPFDKEDWEH K S L IC QVV
Sbjct: 301 LDFQSPQKSGQNFKSAEDMIDLYKELCSEYPIVSIEDPFDKEDWEHIKHISSLGIC-QVV 359
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417
GDDLLMSN KRIERA L +NQ+GT+TE IEVVKLA + WGVV S
Sbjct: 360 GDDLLMSNAKRIERAITESACNALL------LKVNQVGTITEVIEVVKLAKEAHWGVVTS 413
Query: 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
HR GET DSFIADLSVGLASG IKAGAPCRGERL KYNQLL IEEELGD A+YAGED+RQ
Sbjct: 414 HRCGETIDSFIADLSVGLASGVIKAGAPCRGERLEKYNQLLRIEEELGDQAVYAGEDWRQ 473
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745964|emb|CBI16020.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/491 (76%), Positives = 410/491 (83%), Gaps = 21/491 (4%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQ+YL+KHMLSRKIEDAVNAAVRAK+ DPVLFISNHM+KAV SVIT++KARQILDSRG
Sbjct: 1 MSVQDYLDKHMLSRKIEDAVNAAVRAKTSDPVLFISNHMKKAVSSVITRVKARQILDSRG 60
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDL+T+KGMFRASVPSG P GMYEA+ELRDGDKGTYLGN V RAV+N+NE+ISEA
Sbjct: 61 IPTVEVDLYTNKGMFRASVPSGTPIGMYEAVELRDGDKGTYLGNGVTRAVRNVNEKISEA 120
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+GMDP LQSQIDQ MIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL+
Sbjct: 121 LIGMDPTLQSQIDQVMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLS 180
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
G++NL LPVPAFTVISGGKHAGN LA Q+IMILPIGA+ F EALQMG+ETYHHLKAVI E
Sbjct: 181 GQSNLFLPVPAFTVISGGKHAGNTLAAQEIMILPIGATRFEEALQMGAETYHHLKAVITE 240
Query: 241 KYGAHGCNVGEDGGLAPNISS-----------IREGLDLVKEAINRTGIPSS-KWSDCKS 288
KYGAHGC+VGEDGGLAPNIS + + L AI RTG K + +
Sbjct: 241 KYGAHGCHVGEDGGLAPNISRQVWLHLYPDLWKHDKISLRVVAIGRTGYNEKIKIAIDVA 300
Query: 289 SMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKS 348
+ KYDLDFKSPNKSGQNFKSGEDMIEMYKELC DYPIVSIEDPFDKEDWEH ++
Sbjct: 301 ATDFCIGAKYDLDFKSPNKSGQNFKSGEDMIEMYKELCNDYPIVSIEDPFDKEDWEHIRN 360
Query: 349 V--LQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKL 406
L IC QVVGDDLLMSNPKRIERA L +NQ+GTVTEAIEVVKL
Sbjct: 361 FCGLGIC-QVVGDDLLMSNPKRIERARRESTCNALL------LKVNQVGTVTEAIEVVKL 413
Query: 407 ANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGD 466
A D WGVV SHR GETEDSF+ADLSVGLA+GQIKAGAPCRGERLAKYNQL+ IEEELGD
Sbjct: 414 AKDAHWGVVTSHRCGETEDSFLADLSVGLATGQIKAGAPCRGERLAKYNQLIRIEEELGD 473
Query: 467 HAIYAGEDYRQ 477
A+YAGED+RQ
Sbjct: 474 QAVYAGEDWRQ 484
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822671|ref|XP_002879218.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325057|gb|EFH55477.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/482 (76%), Positives = 409/482 (84%), Gaps = 10/482 (2%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQEYL+KHMLSRKIEDAVNAAVRAK+ DPVLFI+NHM+KAV SVITK+KARQILDSRG
Sbjct: 1 MSVQEYLDKHMLSRKIEDAVNAAVRAKTSDPVLFIANHMKKAVSSVITKVKARQILDSRG 60
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDL T+KG+FRASVPSGD SG YEA+ELRDGDKG YLGNSV++AVKNINE+ISEA
Sbjct: 61 IPTVEVDLHTNKGVFRASVPSGDSSGTYEAIELRDGDKGMYLGNSVSKAVKNINEKISEA 120
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+GMDP LQ QIDQAMIDLDKTEKK ELGANAILAVSIAACKAGAAEKEVPL KH++DL+
Sbjct: 121 LIGMDPKLQGQIDQAMIDLDKTEKKSELGANAILAVSIAACKAGAAEKEVPLCKHLSDLS 180
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
G+ N+ LPVPAFTV+SGGKHA N AIQ+IMILPIGAS F EALQ GSETYHHLKAVIAE
Sbjct: 181 GRANMVLPVPAFTVLSGGKHASNTFAIQEIMILPIGASRFEEALQWGSETYHHLKAVIAE 240
Query: 241 KYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KWSDCKSSMHNIYSTKYD 299
K G GCNVGEDGGLAP+ISS++EGL+LVKEAINRTG K + ++ + TKYD
Sbjct: 241 KNGGLGCNVGEDGGLAPDISSLKEGLELVKEAINRTGYNDKIKIAIDVAATNFCLGTKYD 300
Query: 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK--SVLQICQQVV 357
LD KSPNKSGQNFKS +DMI+MYKE+C +YPIVSIEDPFDKEDWEHTK S L IC QVV
Sbjct: 301 LDVKSPNKSGQNFKSADDMIDMYKEICNEYPIVSIEDPFDKEDWEHTKYFSSLGIC-QVV 359
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417
GDDLLMSN KR+ERA L +NQIGTVTEAIEVVK+A D WGVV S
Sbjct: 360 GDDLLMSNSKRVERAIQESSCNALL------LKVNQIGTVTEAIEVVKMARDAQWGVVTS 413
Query: 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
HR GETEDSFI+DLSVGLA+G IKAGAPCRGER KYNQLL IEEELGD A+YAGED++
Sbjct: 414 HRCGETEDSFISDLSVGLATGVIKAGAPCRGERTMKYNQLLRIEEELGDQAVYAGEDWKL 473
Query: 478 CL 479
L
Sbjct: 474 SL 475
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 479 | ||||||
| TAIR|locus:2043067 | 475 | ENOC "cytosolic enolase" [Arab | 0.985 | 0.993 | 0.767 | 8.8e-189 | |
| UNIPROTKB|F1NG74 | 434 | ENO2 "Gamma-enolase" [Gallus g | 0.883 | 0.974 | 0.562 | 8.9e-125 | |
| UNIPROTKB|O57391 | 434 | ENO2 "Gamma-enolase" [Gallus g | 0.883 | 0.974 | 0.555 | 5.7e-123 | |
| UNIPROTKB|P09104 | 434 | ENO2 "Gamma-enolase" [Homo sap | 0.883 | 0.974 | 0.562 | 7.2e-123 | |
| UNIPROTKB|P13929 | 434 | ENO3 "Beta-enolase" [Homo sapi | 0.878 | 0.970 | 0.574 | 9.2e-123 | |
| ZFIN|ZDB-GENE-040426-1651 | 433 | eno1b "enolase 1b, (alpha)" [D | 0.889 | 0.983 | 0.553 | 9.2e-123 | |
| MGI|MGI:95394 | 434 | Eno2 "enolase 2, gamma neurona | 0.883 | 0.974 | 0.559 | 1.5e-122 | |
| MGI|MGI:95395 | 434 | Eno3 "enolase 3, beta muscle" | 0.878 | 0.970 | 0.569 | 5.1e-122 | |
| RGD|2555 | 434 | Eno3 "enolase 3, beta, muscle" | 0.878 | 0.970 | 0.569 | 5.1e-122 | |
| UNIPROTKB|A6QR19 | 434 | ENO2 "ENO2 protein" [Bos tauru | 0.883 | 0.974 | 0.559 | 8.3e-122 |
| TAIR|locus:2043067 ENOC "cytosolic enolase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1830 (649.3 bits), Expect = 8.8e-189, P = 8.8e-189
Identities = 370/482 (76%), Positives = 408/482 (84%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRG 60
MSVQEYL+KHMLSRKIEDAVNAAVRAK+ DPVLFI+NH++KAV SVITK+KARQILDSRG
Sbjct: 1 MSVQEYLDKHMLSRKIEDAVNAAVRAKTSDPVLFIANHLKKAVSSVITKVKARQILDSRG 60
Query: 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120
IPTVEVDL T+KG+FRASVPSGD SG YEA+ELRDGDKG YLGNSV +AVKNINE+ISEA
Sbjct: 61 IPTVEVDLHTNKGVFRASVPSGDSSGTYEAIELRDGDKGMYLGNSVAKAVKNINEKISEA 120
Query: 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180
L+GMDP LQ QIDQAMIDLDKTEKK ELGANAILAVSIAACKAGAAEKEVPL KH++DL+
Sbjct: 121 LIGMDPKLQGQIDQAMIDLDKTEKKSELGANAILAVSIAACKAGAAEKEVPLCKHLSDLS 180
Query: 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE 240
G+ N+ LPVPAFTV+SGGKHA N AIQ+IMILPIGAS F EALQ GSETYHHLKAVI+E
Sbjct: 181 GRANMVLPVPAFTVLSGGKHASNTFAIQEIMILPIGASRFEEALQWGSETYHHLKAVISE 240
Query: 241 KYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KWSDCKSSMHNIYSTKYD 299
K G GCNVGEDGGLAP+ISS++EGL+LVKEAINRTG K + ++ + TKYD
Sbjct: 241 KNGGLGCNVGEDGGLAPDISSLKEGLELVKEAINRTGYNDKIKIAIDIAATNFCLGTKYD 300
Query: 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK--SVLQICQQVV 357
LD KSPNKSGQNFKS EDMI+MYKE+C DYPIVSIEDPFDKEDWEHTK S L ICQ VV
Sbjct: 301 LDIKSPNKSGQNFKSAEDMIDMYKEICNDYPIVSIEDPFDKEDWEHTKYFSSLGICQ-VV 359
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417
GDDLLMSN KR+ERA L +NQIGTVTEAIEVVK+A D WGVV S
Sbjct: 360 GDDLLMSNSKRVERAIQESSCNALL------LKVNQIGTVTEAIEVVKMARDAQWGVVTS 413
Query: 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
HR GETEDSFI+DLSVGLA+G IKAGAPCRGER KYNQLL IEEELGD A+YAGED++
Sbjct: 414 HRCGETEDSFISDLSVGLATGVIKAGAPCRGERTMKYNQLLRIEEELGDQAVYAGEDWKL 473
Query: 478 CL 479
L
Sbjct: 474 SL 475
|
|
| UNIPROTKB|F1NG74 ENO2 "Gamma-enolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
Identities = 244/434 (56%), Positives = 316/434 (72%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
+ +I AR+ILDSRG PTVEVDL+THKGMFRA+VPSG +G+YEALELRD DK +LG V
Sbjct: 3 VERIHAREILDSRGNPTVEVDLYTHKGMFRAAVPSGASTGIYEALELRDNDKSRFLGKGV 62
Query: 107 NRAVKNINERISEALVG--MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN ++ A+VG + + Q +ID M+++D TE K + GANAIL VS+A CKAG
Sbjct: 63 LQAVDHINSTVAPAIVGSGLSVVDQEKIDNLMLEMDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAEK+VPLY+HIADLAG ++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+
Sbjct: 123 AAEKDVPLYRHIADLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YH+LK+VI EKYG NVG++GG APNI E L+L+KEAI++ G
Sbjct: 183 RIGAEVYHNLKSVIKEKYGKDATNVGDEGGFAPNILENSEALELLKEAIDKAGYTDKIVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP+ + + S +++ ++Y+ DYP+VSIEDPFD++DW
Sbjct: 243 GMDVAASEFYRDGKYDLDFKSPDDPSR-YISADELGDLYQSFVRDYPVVSIEDPFDQDDW 301
Query: 344 EH-TKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
E +K + Q+VGDDL ++NPKRIERA L +NQIG+VTEAI+
Sbjct: 302 EAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLL------LKVNQIGSVTEAIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
KLA + WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYR 476
ELGD A +AG ++R
Sbjct: 416 ELGDEARFAGHNFR 429
|
|
| UNIPROTKB|O57391 ENO2 "Gamma-enolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
Identities = 241/434 (55%), Positives = 314/434 (72%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
+ +I AR+ILDSRG PTVEVDL+THKGMFRA+VPSG +G+YEALELRD DK +LG V
Sbjct: 3 VERIHAREILDSRGNPTVEVDLYTHKGMFRAAVPSGASTGIYEALELRDNDKSRFLGKGV 62
Query: 107 NRAVKNINERISEALVG--MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN ++ A+VG + + Q +ID M+++D TE K + GANAIL VS+A CKAG
Sbjct: 63 LQAVDHINSTVAPAIVGSGLSVVDQEKIDNLMLEMDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAEK+VPLY+HIADLAG ++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+
Sbjct: 123 AAEKDVPLYRHIADLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YH+LK+VI EKYG NVG++GG APNI E L+L+KEAI++ G
Sbjct: 183 RIGAEVYHNLKSVIKEKYGKDATNVGDEGGFAPNILENSEALELLKEAIDKAGYTDKIVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP+ + + S +++ ++Y+ YP++SIEDPFD++DW
Sbjct: 243 GMDVAASEFYRDGKYDLDFKSPDDPSR-YISADELGDLYQSFVRAYPVLSIEDPFDQDDW 301
Query: 344 EH-TKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
E +K + Q+VGDDL ++NPKRIERA L +NQIG+VTEAI+
Sbjct: 302 EAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLL------LKVNQIGSVTEAIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
KLA + WGV++SHRSGETED+FIADL V L +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACKLAQENGWGVMVSHRSGETEDTFIADLVVALCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYR 476
ELGD A +AG ++R
Sbjct: 416 ELGDEARFAGHNFR 429
|
|
| UNIPROTKB|P09104 ENO2 "Gamma-enolase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
Identities = 244/434 (56%), Positives = 311/434 (71%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I KI AR+ILDSRG PTVEVDL+T KG+FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 3 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 62
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN I+ AL+ G+ + Q ++D M++LD TE K + GANAIL VS+A CKAG
Sbjct: 63 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAE+E+PLY+HIA LAG ++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+
Sbjct: 123 AAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YH LK VI +KYG NVG++GG APNI E L+LVKEAI++ G
Sbjct: 183 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP + + +G+ + +Y++ DYP+VSIEDPFD++DW
Sbjct: 243 GMDVAASEFYRDGKYDLDFKSPTDPSR-YITGDQLGALYQDFVRDYPVVSIEDPFDQDDW 301
Query: 344 EH-TKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
+K + Q+VGDDL ++NPKRIERA L +NQIG+VTEAI+
Sbjct: 302 AAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLL------LKVNQIGSVTEAIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
KLA + WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYR 476
ELGD A +AG ++R
Sbjct: 416 ELGDEARFAGHNFR 429
|
|
| UNIPROTKB|P13929 ENO3 "Beta-enolase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
Identities = 248/432 (57%), Positives = 305/432 (70%)
Query: 49 KIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNR 108
KI AR+ILDSRG PTVEVDL T KG FRA+VPSG +G+YEALELRDGDKG YLG V +
Sbjct: 5 KIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKGRYLGKGVLK 64
Query: 109 AVKNINERISEALVG--MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAA 166
AV+NIN + AL+ + + Q ++D+ MI+LD TE K + GANAIL VS+A CKAGAA
Sbjct: 65 AVENINNTLGPALLQKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAA 124
Query: 167 EKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQM 226
EK VPLY+HIADLAG +L LPVPAF VI+GG HAGN LA+Q+ MILP+GASSF EA+++
Sbjct: 125 EKGVPLYRHIADLAGNPDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRI 184
Query: 227 GSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDC 286
G+E YHHLK VI KYG NVG++GG APNI E L+L+K AI G P
Sbjct: 185 GAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGM 244
Query: 287 KSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEH 345
+ Y KYDLDFKSP+ ++ +GE + E+YK +YP+VSIEDPFD++DW
Sbjct: 245 DVAASEFYRNGKYDLDFKSPDDPARHI-TGEKLGELYKSFIKNYPVVSIEDPFDQDDWAT 303
Query: 346 TKSVLQ-ICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVV 404
S L + Q+VGDDL ++NPKRI +A L +NQIG+VTE+I+
Sbjct: 304 WTSFLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLL------LKVNQIGSVTESIQAC 357
Query: 405 KLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEEL 464
KLA WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE L
Sbjct: 358 KLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEAL 417
Query: 465 GDHAIYAGEDYR 476
GD AI+AG +R
Sbjct: 418 GDKAIFAGRKFR 429
|
|
| ZFIN|ZDB-GENE-040426-1651 eno1b "enolase 1b, (alpha)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
Identities = 242/437 (55%), Positives = 313/437 (71%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I KI AR+I DSRG PTVEVDL+T +G+FRA+VPSG +G+YEALELRD DK YLG V
Sbjct: 3 ILKIHAREIFDSRGNPTVEVDLYTERGLFRAAVPSGASTGIYEALELRDNDKSRYLGKGV 62
Query: 107 NRAVKNINERISEALVGMD-PIL-QSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
++AV+N+N+ I+ AL+G P++ Q +IDQ M++LD TE K GANAIL VS+AACKAG
Sbjct: 63 SKAVENVNQHIAPALIGQGIPVVEQEKIDQFMLELDGTENKSRFGANAILGVSLAACKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAEK VPLY+HIADLAG + LPVPAF VI+GG HAGN LA+Q+ MILP+GASSF EA+
Sbjct: 123 AAEKGVPLYRHIADLAGNPEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YH+LK VI +KYG NVG++GG APNI +E L+L+K AI++ G
Sbjct: 183 RIGAEVYHNLKNVIKQKYGQDATNVGDEGGFAPNILENKEALELLKNAISKAGYTDEVVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y +YDLDFKSP+ + + S +++ ++YK DYP+VSIEDPFD++DW
Sbjct: 243 GMDVAASEFYRDGQYDLDFKSPDDPDR-YISPDELADLYKSFIEDYPVVSIEDPFDQDDW 301
Query: 344 EHTKSVLQICQ-QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
E + + QVVGDDL ++NPKRI A L +NQIGTVTE+++
Sbjct: 302 EAWTNFTNSTEIQVVGDDLTVTNPKRIATAVENEACNCLL------LKVNQIGTVTESLQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
+A WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQ+L IEE
Sbjct: 356 ACNMAQSSGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQILRIEE 415
Query: 463 ELGDHAIYAGEDYRQCL 479
ELG+ A +AG+++R L
Sbjct: 416 ELGEKARFAGKNFRNPL 432
|
|
| MGI|MGI:95394 Eno2 "enolase 2, gamma neuronal" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
Identities = 243/434 (55%), Positives = 312/434 (71%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I KI AR+ILDSRG PTVEVDL+T KG+FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 3 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 62
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN RI+ AL+ G+ + Q ++D M++LD TE K + GANAIL VS+A CKAG
Sbjct: 63 LKAVDHINSRIAPALISSGISVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAE+++PLY+HIA LAG ++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+
Sbjct: 123 AAERDLPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YH LK VI +KYG NVG++GG APNI E L+LVKEAI++ G
Sbjct: 183 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKMVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP + + +G+ + +Y++ +YP+VSIEDPFD++DW
Sbjct: 243 GMDVAASEFYRDGKYDLDFKSPADPSR-YITGDQLGALYQDFVRNYPVVSIEDPFDQDDW 301
Query: 344 EH-TKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
+K + Q+VGDDL ++NPKRIERA L +NQIG+VTEAI+
Sbjct: 302 AAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLL------LKVNQIGSVTEAIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
KLA + WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYR 476
ELGD A +AG ++R
Sbjct: 416 ELGDEARFAGHNFR 429
|
|
| MGI|MGI:95395 Eno3 "enolase 3, beta muscle" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
Identities = 246/432 (56%), Positives = 305/432 (70%)
Query: 49 KIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNR 108
KI AR+ILDSRG PTVEVDL T KG FRA+VPSG +G+YEALELRDGDK YLG V +
Sbjct: 5 KIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKARYLGKGVLK 64
Query: 109 AVKNINERISEALVG--MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAA 166
AV++IN+ + AL+ + + Q ++D+ MI+LD TE K + GANAIL VS+A CKAGAA
Sbjct: 65 AVEHINKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAA 124
Query: 167 EKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQM 226
EK VPLY+HIADLAG +L LPVPAF VI+GG HAGN LA+Q+ MILP+GASSF EA+++
Sbjct: 125 EKGVPLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRI 184
Query: 227 GSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDC 286
G+E YHHLK VI KYG NVG++GG APNI E L+L+K AI G P
Sbjct: 185 GAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGM 244
Query: 287 KSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEH 345
+ Y KYDLDFKSP+ ++ SGE + E+YK +YP+VSIEDPFD++DW
Sbjct: 245 DVAASEFYRNGKYDLDFKSPDDPARHI-SGEKLGELYKNFIQNYPVVSIEDPFDQDDWAT 303
Query: 346 TKSVLQ-ICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVV 404
S L + Q+VGDDL ++NPKRI +A L +NQIG+VTE+I+
Sbjct: 304 WTSFLSGVDIQIVGDDLTVTNPKRIAQAVEKKACNCLL------LKVNQIGSVTESIQAC 357
Query: 405 KLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEEL 464
KLA WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE L
Sbjct: 358 KLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEAL 417
Query: 465 GDHAIYAGEDYR 476
GD A++AG +R
Sbjct: 418 GDKAVFAGRKFR 429
|
|
| RGD|2555 Eno3 "enolase 3, beta, muscle" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
Identities = 246/432 (56%), Positives = 305/432 (70%)
Query: 49 KIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNR 108
KI AR+ILDSRG PTVEVDL T KG FRA+VPSG +G+YEALELRDGDK YLG V +
Sbjct: 5 KIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLK 64
Query: 109 AVKNINERISEALVG--MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAA 166
AV++IN+ + AL+ + + Q ++D+ MI+LD TE K + GANAIL VS+A CKAGAA
Sbjct: 65 AVEHINKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAA 124
Query: 167 EKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQM 226
EK VPLY+HIADLAG +L LPVPAF VI+GG HAGN LA+Q+ MILP+GASSF EA+++
Sbjct: 125 EKGVPLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRI 184
Query: 227 GSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDC 286
G+E YHHLK VI KYG NVG++GG APNI E L+L+K AI G P
Sbjct: 185 GAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGM 244
Query: 287 KSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEH 345
+ Y KYDLDFKSP+ ++ SGE + E+YK +YP+VSIEDPFD++DW
Sbjct: 245 DVAASEFYRNGKYDLDFKSPDDPARHI-SGEKLGELYKSFIKNYPVVSIEDPFDQDDWAT 303
Query: 346 TKSVLQ-ICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVV 404
S L + Q+VGDDL ++NPKRI +A L +NQIG+VTE+I+
Sbjct: 304 WTSFLSGVDIQIVGDDLTVTNPKRIAQAVEKKACNCLL------LKVNQIGSVTESIQAC 357
Query: 405 KLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEEL 464
KLA WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE L
Sbjct: 358 KLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEAL 417
Query: 465 GDHAIYAGEDYR 476
GD A++AG +R
Sbjct: 418 GDKAVFAGRKFR 429
|
|
| UNIPROTKB|A6QR19 ENO2 "ENO2 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
Identities = 243/434 (55%), Positives = 309/434 (71%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I KI AR+ILDSRG PTVEVDL T KG+FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 3 IEKIWAREILDSRGNPTVEVDLHTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 62
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN I+ L+ G+ + Q ++D M+DLD TE K + GANAIL VS+A CKAG
Sbjct: 63 LKAVDHINTTIAPVLISSGLSVVEQEKLDNLMLDLDGTENKSKFGANAILGVSLAVCKAG 122
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAE+E+PLY+HIA LAG ++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+
Sbjct: 123 AAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 182
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWS 284
++G+E YH LK VI +KYG NVG++GG APNI E L+LVKEAI++ G
Sbjct: 183 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVI 242
Query: 285 DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
+ Y KYDLDFKSP + + +G+ + +Y++ DYP+VSIEDPFD++DW
Sbjct: 243 GMDVAASEFYRDGKYDLDFKSPADPSR-YITGDQLGALYQDFVRDYPVVSIEDPFDQDDW 301
Query: 344 EH-TKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIE 402
+K + Q+VGDDL ++NPKRIERA L +NQIG+VTEAI+
Sbjct: 302 AAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLL------LKVNQIGSVTEAIQ 355
Query: 403 VVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEE 462
+LA + WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEE
Sbjct: 356 ACRLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEE 415
Query: 463 ELGDHAIYAGEDYR 476
ELGD A +AG ++R
Sbjct: 416 ELGDEARFAGHNFR 429
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P19140 | ENOA_ANAPL | 4, ., 2, ., 1, ., 1, 1 | 0.5448 | 0.8851 | 0.9769 | N/A | no |
| O02654 | ENO_DORPE | 4, ., 2, ., 1, ., 1, 1 | 0.5413 | 0.8747 | 0.9654 | N/A | no |
| P42896 | ENO_RICCO | 4, ., 2, ., 1, ., 1, 1 | 0.5530 | 0.8851 | 0.9528 | N/A | no |
| P42895 | ENO2_MAIZE | 4, ., 2, ., 1, ., 1, 1 | 0.5505 | 0.8872 | 0.9529 | N/A | no |
| Q9LEI9 | ENO2_HEVBR | 4, ., 2, ., 1, ., 1, 1 | 0.5520 | 0.8830 | 0.9505 | N/A | no |
| Q9W7L1 | ENOA_TRASC | 4, ., 2, ., 1, ., 1, 1 | 0.5356 | 0.8851 | 0.9769 | N/A | no |
| Q27877 | ENO_SCHMA | 4, ., 2, ., 1, ., 1, 1 | 0.5504 | 0.8851 | 0.9769 | N/A | no |
| Q43321 | ENO_ALNGL | 4, ., 2, ., 1, ., 1, 1 | 0.5520 | 0.8747 | 0.9522 | N/A | no |
| Q9BPL7 | ENO2_TOXGO | 4, ., 2, ., 1, ., 1, 1 | 0.5336 | 0.8851 | 0.9549 | N/A | no |
| Q27527 | ENO_CAEEL | 4, ., 2, ., 1, ., 1, 1 | 0.5649 | 0.8789 | 0.9700 | yes | no |
| Q9U615 | ENO_MASBA | 4, ., 2, ., 1, ., 1, 1 | 0.5240 | 0.8830 | 0.9635 | N/A | no |
| P17183 | ENOG_MOUSE | 4, ., 2, ., 1, ., 1, 1 | 0.5599 | 0.8830 | 0.9746 | yes | no |
| P33676 | ENO_SCHJA | 4, ., 2, ., 1, ., 1, 1 | 0.5550 | 0.8851 | 0.9769 | N/A | no |
| O74286 | ENO_CUNEL | 4, ., 2, ., 1, ., 1, 1 | 0.5419 | 0.8893 | 0.9770 | N/A | no |
| Q9PVK2 | ENOA_ALLMI | 4, ., 2, ., 1, ., 1, 1 | 0.5379 | 0.8851 | 0.9769 | N/A | no |
| Q8IJN7 | ENO_PLAF7 | 4, ., 2, ., 1, ., 1, 1 | 0.5245 | 0.8810 | 0.9461 | yes | no |
| Q9UAL5 | ENO_PLAFG | 4, ., 2, ., 1, ., 1, 1 | 0.5303 | 0.8872 | 0.9529 | N/A | no |
| O57391 | ENOG_CHICK | 4, ., 2, ., 1, ., 1, 1 | 0.5540 | 0.8851 | 0.9769 | yes | no |
| Q9LEJ0 | ENO1_HEVBR | 4, ., 2, ., 1, ., 1, 1 | 0.5563 | 0.8872 | 0.9550 | N/A | no |
| P56252 | ENO_HOMGA | 4, ., 2, ., 1, ., 1, 1 | 0.5402 | 0.8851 | 0.9792 | N/A | no |
| Q27655 | ENO_FASHE | 4, ., 2, ., 1, ., 1, 1 | 0.5331 | 0.8810 | 0.9791 | N/A | no |
| Q9ZW34 | ENO3_ARATH | 4, ., 2, ., 1, ., 1, 1 | 0.7676 | 0.9853 | 0.9936 | yes | no |
| Q42971 | ENO_ORYSJ | 4, ., 2, ., 1, ., 1, 1 | 0.5460 | 0.8872 | 0.9529 | yes | no |
| Q43130 | ENO_MESCR | 4, ., 2, ., 1, ., 1, 1 | 0.5570 | 0.8810 | 0.9504 | N/A | no |
| Q9W7L2 | ENOA_SCEUN | 4, ., 2, ., 1, ., 1, 1 | 0.5310 | 0.8851 | 0.9769 | N/A | no |
| P42894 | ENO_NEOFR | 4, ., 2, ., 1, ., 1, 1 | 0.5409 | 0.8830 | 0.9701 | N/A | no |
| P13929 | ENOB_HUMAN | 4, ., 2, ., 1, ., 1, 1 | 0.5714 | 0.8830 | 0.9746 | yes | no |
| Q27727 | ENO_PLAFA | 4, ., 2, ., 1, ., 1, 1 | 0.5245 | 0.8810 | 0.9461 | yes | no |
| Q9W7L0 | ENOA_PYTRG | 4, ., 2, ., 1, ., 1, 1 | 0.5414 | 0.8830 | 0.9746 | N/A | no |
| P15429 | ENOB_RAT | 4, ., 2, ., 1, ., 1, 1 | 0.5668 | 0.8830 | 0.9746 | yes | no |
| Q4R5L2 | ENOA_MACFA | 4, ., 2, ., 1, ., 1, 1 | 0.5514 | 0.8893 | 0.9815 | N/A | no |
| Q54RK5 | ENOA_DICDI | 4, ., 2, ., 1, ., 1, 1 | 0.5431 | 0.8872 | 0.9792 | yes | no |
| P08734 | ENOA_XENLA | 4, ., 2, ., 1, ., 1, 1 | 0.5609 | 0.8851 | 0.9769 | N/A | no |
| P26301 | ENO1_MAIZE | 4, ., 2, ., 1, ., 1, 1 | 0.5405 | 0.8851 | 0.9506 | N/A | no |
| P26300 | ENO_SOLLC | 4, ., 2, ., 1, ., 1, 1 | 0.5528 | 0.8893 | 0.9594 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| gw1.IX.3951.1 | RecName- Full=Enolase; EC=4.2.1.11; (476 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| eugene3.00080776 | RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (402 aa) | • | • | • | 0.662 | ||||||
| grail3.0154005402 | phosphoglycerate kinase (EC-2.7.7.2 2.7.2.3) (402 aa) | • | • | • | 0.661 | ||||||
| estExt_fgenesh4_pm.C_LG_VIII0335 | phosphoglycerate kinase (481 aa) | • | • | • | 0.605 | ||||||
| estExt_fgenesh4_pm.C_LG_X0655 | phosphoglycerate kinase (481 aa) | • | • | • | 0.601 | ||||||
| fgenesh4_pg.C_scaffold_2886000001 | Phosphoglycerate kinase (397 aa) | • | • | • | 0.552 | ||||||
| gw1.XI.1444.1 | aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa) | • | 0.531 | ||||||||
| fgenesh4_pm.C_LG_XIV000511 | hypothetical protein; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to [...] (323 aa) | • | 0.517 | ||||||||
| eugene3.00030830 | lactate dehydrogenase (EC-1.1.1.27) (351 aa) | • | 0.491 | ||||||||
| eugene3.29900002 | Predicted protein (297 aa) | • | 0.489 | ||||||||
| estExt_Genewise1_v1.C_LG_IV0988 | hypothetical protein (256 aa) | • | • | • | • | 0.459 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 479 | |||
| PLN00191 | 457 | PLN00191, PLN00191, enolase | 0.0 | |
| cd03313 | 408 | cd03313, enolase, Enolase: Enolases are homodimeri | 0.0 | |
| PTZ00081 | 439 | PTZ00081, PTZ00081, enolase; Provisional | 0.0 | |
| PRK00077 | 425 | PRK00077, eno, enolase; Provisional | 0.0 | |
| COG0148 | 423 | COG0148, Eno, Enolase [Carbohydrate transport and | 1e-167 | |
| TIGR01060 | 425 | TIGR01060, eno, phosphopyruvate hydratase | 1e-160 | |
| pfam00113 | 296 | pfam00113, Enolase_C, Enolase, C-terminal TIM barr | 1e-129 | |
| pfam03952 | 132 | pfam03952, Enolase_N, Enolase, N-terminal domain | 5e-65 | |
| PRK08350 | 341 | PRK08350, PRK08350, hypothetical protein; Provisio | 4e-15 | |
| cd00308 | 229 | cd00308, enolase_like, Enolase-superfamily, charac | 1e-05 | |
| PTZ00378 | 518 | PTZ00378, PTZ00378, hypothetical protein; Provisio | 1e-04 |
| >gnl|CDD|215095 PLN00191, PLN00191, enolase | Back alignment and domain information |
|---|
Score = 774 bits (2001), Expect = 0.0
Identities = 301/466 (64%), Positives = 360/466 (77%), Gaps = 20/466 (4%)
Query: 20 VNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASV 79
VNAAVRAK+PDPVLFI+NH++KAV + ITK+KARQI+DSRG PTVEVDL T KGMFRA+V
Sbjct: 1 VNAAVRAKTPDPVLFIANHLKKAVMATITKVKARQIIDSRGNPTVEVDLHTSKGMFRAAV 60
Query: 80 PSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDL 139
PSG +G+YEALELRDGDK YLG V +AVKN+NE I+ AL+GMDP Q+QID M++L
Sbjct: 61 PSGASTGIYEALELRDGDKD-YLGKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLEL 119
Query: 140 DKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGK 199
D T KG+LGANAILAVS+A CKAGAAEK VPLYKHIADLAG L LPVPAF VI+GG
Sbjct: 120 DGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFNVINGGS 179
Query: 200 HAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNI 259
HAGN LA+Q+ MILP+GASSF EA+QMGSE YHHLKAVI +KYG CNVG++GG APNI
Sbjct: 180 HAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNI 239
Query: 260 SSIREGLDLVKEAINRTGIPSSKWS---DCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGE 316
+EGL+L+KEAI + G + K D +S KYDLDFK N G N KSG+
Sbjct: 240 QDNKEGLELLKEAIEKAGY-TGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGD 298
Query: 317 DMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV--LQICQQVVGDDLLMSNPKRIERATL 374
++I++YKE +DYPIVSIEDPFD++DWEH + L+ Q+VGDDLL++NPKR+ +A
Sbjct: 299 ELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLTSLEDV-QIVGDDLLVTNPKRVAKA-- 355
Query: 375 IPLAMLFFSRYPSN---LWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADL 431
N L +NQIGTVTE+IE VK++ WGV+ SHRSGETEDSFIADL
Sbjct: 356 -------IQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFIADL 408
Query: 432 SVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
+VGLA+GQIK GAPCR ERLAKYNQLL IEEELGD A+YAGE++R+
Sbjct: 409 AVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGDEAVYAGENFRK 454
|
Length = 457 |
| >gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Score = 590 bits (1524), Expect = 0.0
Identities = 224/429 (52%), Positives = 284/429 (66%), Gaps = 35/429 (8%)
Query: 49 KIKARQILDSRGIPTVEVDLFT-HKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVN 107
KIKAR+ILDSRG PTVEV++ T G+ RA+VPSG +G +EA+ELRDGDK YLG V
Sbjct: 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVL 60
Query: 108 RAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAE 167
+AVKN+NE I+ AL+GMD Q ID+ +I+LD T K +LGANAIL VS+A KA AA
Sbjct: 61 KAVKNVNEIIAPALIGMDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAA 120
Query: 168 KEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMG 227
+PLY+++ LA LPVP F VI+GG HAGN L Q+ MI+P+GA SF EAL+MG
Sbjct: 121 LGLPLYRYLGGLA---AYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSEALRMG 177
Query: 228 SETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSKWS-- 284
+E YH LK V+ +K G NVG++GG APN+SS E LDL+ EAI + G P K +
Sbjct: 178 AEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIA 237
Query: 285 -DCKSSMHNIY-STKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED 342
D +S Y KY D + E++I+ YKEL YPIVSIEDPFD++D
Sbjct: 238 LDVAAS--EFYDEGKYVYD-----SDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDD 290
Query: 343 WEH----TKSVLQICQQVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQI 394
WE T + Q+VGDDL ++NP+R+++ I A+L + +NQI
Sbjct: 291 WEGWAKLTAKLGDKI-QIVGDDLFVTNPERLKKG--IEKKAANALL--------IKVNQI 339
Query: 395 GTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKY 454
GT+TE IE +KLA +GVV+SHRSGETED+FIADL+V L +GQIK GAPCR ER AKY
Sbjct: 340 GTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQIKTGAPCRSERTAKY 399
Query: 455 NQLLHIEEE 463
NQLL IEEE
Sbjct: 400 NQLLRIEEE 408
|
The reaction is facilitated by the presence of metal ions. Length = 408 |
| >gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional | Back alignment and domain information |
|---|
Score = 577 bits (1489), Expect = 0.0
Identities = 255/448 (56%), Positives = 313/448 (69%), Gaps = 28/448 (6%)
Query: 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLG 103
S I IKAR+ILDSRG PTVEVDL T KG+FRA+VPSG +G+YEALELRDGDK YLG
Sbjct: 1 MSTIKSIKAREILDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLG 60
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMID-LDKTEK-----KGELGANAILAVS 157
V +AV+N+NE I+ AL+G D Q ++D+ M++ LD T+ K +LGANAILAVS
Sbjct: 61 KGVLKAVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVS 120
Query: 158 IAACKAGAAEKEVPLYKHIADLAGKT--NLTLPVPAFTVISGGKHAGNNLAIQDIMILPI 215
+A +A AA K VPLYK++A LAGK LPVP F VI+GGKHAGN LA Q+ MI P+
Sbjct: 121 MAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVINGGKHAGNKLAFQEFMIAPV 180
Query: 216 GASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINR 275
GA SF EAL+MG+E YH LK+VI +KYG NVG++GG APNI E LDL+ EAI +
Sbjct: 181 GAPSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKK 240
Query: 276 TGIPSSKWS---DCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPI 331
G K D +S ++ YDLDFK+PN N +GE+++E+Y +L YPI
Sbjct: 241 AGY-EGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI 299
Query: 332 VSIEDPFDKEDWE-HTKSVLQICQ--QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSN 388
VSIEDPFD++DWE + K I Q Q+VGDDLL++NP RI++A + N
Sbjct: 300 VSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKA---------IEKKACN 350
Query: 389 ---LWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445
L +NQIGTVTEAIE KLA WGV++SHRSGETED+FIADL VGL +GQIK GAP
Sbjct: 351 ALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAP 410
Query: 446 CRGERLAKYNQLLHIEEELGDHAIYAGE 473
CR ERLAKYNQLL IEEELG +A+YAGE
Sbjct: 411 CRSERLAKYNQLLRIEEELGSNAVYAGE 438
|
Length = 439 |
| >gnl|CDD|234617 PRK00077, eno, enolase; Provisional | Back alignment and domain information |
|---|
Score = 535 bits (1381), Expect = 0.0
Identities = 212/446 (47%), Positives = 277/446 (62%), Gaps = 48/446 (10%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
S I I AR+ILDSRG PTVEV++ G F RA+VPSG +G EA+ELRDGDK YLG
Sbjct: 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLG 61
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV+N+NE I+ AL+G+D + Q ID+AMI+LD T K +LGANAIL VS+A KA
Sbjct: 62 KGVLKAVENVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKA 121
Query: 164 GAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEA 223
A +PLY++ L G LPVP +I+GG HA NN+ IQ+ MI+P+GA SF EA
Sbjct: 122 AADSLGLPLYRY---LGGPNAKVLPVPMMNIINGGAHADNNVDIQEFMIMPVGAPSFKEA 178
Query: 224 LQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSK 282
L+MG+E +H LK V+ EK VG++GG APN+ S E LDL+ EAI + G P
Sbjct: 179 LRMGAEVFHTLKKVLKEK--GLSTAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGED 236
Query: 283 WS---DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338
+ DC +S Y KY L+ G+ + E+MI+ EL YPIVSIED
Sbjct: 237 IALALDCAAS--EFYKDGKYVLE-------GEGL-TSEEMIDYLAELVDKYPIVSIEDGL 286
Query: 339 DKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRYP 386
D+ DWE T+ + Q+VGDDL ++N KR+++ + LI +
Sbjct: 287 DENDWEGWKLLTEKLGDKV-QLVGDDLFVTNTKRLKKGIEKGAANSILIKV--------- 336
Query: 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPC 446
NQIGT+TE ++ ++LA + V+SHRSGETED+ IADL+V +GQIK G+
Sbjct: 337 -----NQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAGQIKTGSLS 391
Query: 447 RGERLAKYNQLLHIEEELGDHAIYAG 472
R ER+AKYNQLL IEEELGD A YAG
Sbjct: 392 RSERIAKYNQLLRIEEELGDAARYAG 417
|
Length = 425 |
| >gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 477 bits (1229), Expect = e-167
Identities = 214/446 (47%), Positives = 276/446 (61%), Gaps = 49/446 (10%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKG-MFRASVPSGDPSGMYEALELRDGDKGTYLG 103
S I + AR+ILDSRG PTVEV++ G RA+VPSG +G +EA+ELRDGD YLG
Sbjct: 2 SAIEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDS-RYLG 60
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV N+NE I+ AL+G+D Q+ ID +I+LD TE K +LGANAIL VS+A KA
Sbjct: 61 KGVLKAVANVNEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKA 120
Query: 164 GAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEA 223
AA +PLY+++ G L LPVP VI+GG HA NNL IQ+ MI+P+GA SF EA
Sbjct: 121 AAASLGIPLYRYLG---GLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKEA 177
Query: 224 LQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSK 282
L+ G+E +HHLK ++ EK VG++GG APN+ S E LD++ EAI G P
Sbjct: 178 LRAGAEVFHHLKKLLKEK--GLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGED 235
Query: 283 WS---DCKSSMHNIY-STKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338
+ D +S Y KY L+ +S + E++IE Y EL YPIVSIEDP
Sbjct: 236 IALALDVAAS--EFYKDGKYVLEGES--------LTSEELIEYYLELVKKYPIVSIEDPL 285
Query: 339 DKEDWEH----TKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRYP 386
++DWE TK + Q +VGDDL ++NPKR+++ A LI
Sbjct: 286 SEDDWEGFAELTKRLGDKVQ-IVGDDLFVTNPKRLKKGIEKGAANAILIKP--------- 335
Query: 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPC 446
NQIGT+TE +E + LA D + VISHRSGETED+ IADL+V +GQIK G+
Sbjct: 336 -----NQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLS 390
Query: 447 RGERLAKYNQLLHIEEELGDHAIYAG 472
R ER+AKYN+LL IEEELGD A YAG
Sbjct: 391 RSERVAKYNELLRIEEELGDKARYAG 416
|
Length = 423 |
| >gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase | Back alignment and domain information |
|---|
Score = 460 bits (1186), Expect = e-160
Identities = 206/440 (46%), Positives = 270/440 (61%), Gaps = 36/440 (8%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNS 105
I I+AR+ILDSRG PTVEV++ G F RA+VPSG +G EALELRDGDK YLG
Sbjct: 1 IVDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKG 60
Query: 106 VNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGA 165
V +AV+N+NE I+ L+GMD Q +IDQ +I+LD T K +LGANAIL VS+A KA A
Sbjct: 61 VLKAVENVNEIIAPELIGMDATDQREIDQILIELDGTPNKSKLGANAILGVSMAVAKAAA 120
Query: 166 AEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQ 225
+PLY++ L G LPVP +I+GG HA NNL Q+ MI+P+GA SF EAL+
Sbjct: 121 DSLGLPLYRY---LGGFNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAPSFREALR 177
Query: 226 MGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSD 285
MG+E +H LK ++ EK VG++GG APN++S E L+++ EAI + G D
Sbjct: 178 MGAEVFHALKKLLKEKG--LATGVGDEGGFAPNLASNEEALEIIVEAIEKAGY--KPGED 233
Query: 286 CKSSMHNIYSTKYDLDFKSPNKSGQN-FKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE 344
++ S YD + G+N + E+MIE Y+EL YPI+SIED +EDWE
Sbjct: 234 VALALDCAASEFYDEEDGKYVYKGENKQLTSEEMIEYYEELVEKYPIISIEDGLSEEDWE 293
Query: 345 H----TKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRYPSNLWIN 392
TK + Q +VGDDL ++N + + + LI N
Sbjct: 294 GWAELTKRLGDKVQ-IVGDDLFVTNTEILREGIEMGVANSILIKP--------------N 338
Query: 393 QIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLA 452
QIGT+TE ++ ++LA + VISHRSGETED+ IADL+V +GQIK G+ R ER+A
Sbjct: 339 QIGTLTETLDAIELAKKAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIA 398
Query: 453 KYNQLLHIEEELGDHAIYAG 472
KYNQLL IEEELGD A YAG
Sbjct: 399 KYNQLLRIEEELGDSARYAG 418
|
Alternate name: enolase [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 425 |
| >gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain | Back alignment and domain information |
|---|
Score = 375 bits (965), Expect = e-129
Identities = 164/300 (54%), Positives = 205/300 (68%), Gaps = 16/300 (5%)
Query: 185 LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGA 244
LPVP VI+GG HAGN LA+Q+ MILP GASSF EA++MGSE YH+LK+VI KYG
Sbjct: 2 YVLPVPMMNVINGGSHAGNKLAMQEFMILPTGASSFTEAMRMGSEVYHNLKSVIKAKYGQ 61
Query: 245 HGCNVGEDGGLAPNISSIREGLDLVKEAINRTGI-PSSKWS-DCKSS-MHNIYSTKYDLD 301
NVG++GG APNI S +E LDL+ EAI + G K + D SS +N KYDLD
Sbjct: 62 DATNVGDEGGFAPNIQSNKEALDLIVEAIEKAGYTGKVKIAMDVASSEFYNKKDGKYDLD 121
Query: 302 FKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE---HTKSVLQICQQVVG 358
FK+P + + + + ++YKEL YPIVSIEDPFD++DWE + L Q+VG
Sbjct: 122 FKNPKSDPSKWLTSDQLADLYKELIKKYPIVSIEDPFDEDDWEAWKKLTASLGDKIQIVG 181
Query: 359 DDLLMSNPKRIERA--TLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVI 416
DDL ++NPKRI +A ++L L +NQIG+VTE++ VK+A D WGV++
Sbjct: 182 DDLTVTNPKRIAKAIEKKACNSLL--------LKVNQIGSVTESLAAVKMAKDAGWGVMV 233
Query: 417 SHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYR 476
SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQLL IEEELG A YAG ++R
Sbjct: 234 SHRSGETEDTFIADLVVGLNAGQIKTGAPCRSERLAKYNQLLRIEEELGSKAKYAGRNFR 293
|
Length = 296 |
| >gnl|CDD|202827 pfam03952, Enolase_N, Enolase, N-terminal domain | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 5e-65
Identities = 75/132 (56%), Positives = 96/132 (72%), Gaps = 1/132 (0%)
Query: 46 VITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGN 104
ITKI AR+ILDSRG PTVEV++ G F RA+VPSG +G +EA+ELRDGDK Y G
Sbjct: 1 TITKIHAREILDSRGNPTVEVEVTLEDGTFGRAAVPSGASTGSHEAVELRDGDKSRYGGK 60
Query: 105 SVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
V +AV+N+NE I+ AL+GMD Q ID+ +I+LD T K +LGANAILAVS+A KA
Sbjct: 61 GVLKAVENVNEIIAPALIGMDARDQRAIDKTLIELDGTPNKSKLGANAILAVSLAVAKAA 120
Query: 165 AAEKEVPLYKHI 176
AA +PLY+++
Sbjct: 121 AAALGLPLYRYL 132
|
Length = 132 |
| >gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 4e-15
Identities = 50/153 (32%), Positives = 68/153 (44%), Gaps = 17/153 (11%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGN 104
+VI I R + G +VEVD+ T G R + P + +Y A
Sbjct: 2 TVIENIIGRVAVLRGGKYSVEVDVITDSGFGRFAAPIDENPSLYIA-------------- 47
Query: 105 SVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+RAV ++E I L+G D Q ID + ++D TE +GAN LAVS+A KA
Sbjct: 48 EAHRAVSEVDEIIGPELIGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAA 107
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISG 197
A K +PLY +I G LPVP
Sbjct: 108 ANSKNMPLYSYI---GGTFTTELPVPILEFAED 137
|
Length = 341 |
| >gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 10/124 (8%)
Query: 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQ-QVVGDDLLMSNPKRIERA 372
+ ++ I + + L Y + IE+P +D E ++ + + D+ + + +E A
Sbjct: 106 TPKEAIRLIRAL-EKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAADESVTTVDDALE-A 163
Query: 373 TLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG-ETEDSFIADL 431
+ + + ++G +TE+ LA V++ + L
Sbjct: 164 LELGAVDIL------QIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHL 217
Query: 432 SVGL 435
+ L
Sbjct: 218 AAAL 221
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. Length = 229 |
| >gnl|CDD|173571 PTZ00378, PTZ00378, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 57/286 (19%), Positives = 111/286 (38%), Gaps = 21/286 (7%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMR-KAVPSVITKIKARQILDSR 59
+S + Y ++ LS + +A + V A P +++ + R K I + ++L
Sbjct: 4 VSWKRYDDEFKLSGILTEAARSCVDAHPARPKEYLAAYFREKCSGDEIRALVHNEVLSPA 63
Query: 60 GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISE 119
G + L GM V SG + + RDG+ L + + +
Sbjct: 64 GETVLRFTLELLNGM---EVSSGAL--LSPSHGERDGEADATLDPAEY-TTEALQNSYFP 117
Query: 120 ALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL 179
L+ + Q + D + T +G+ A+SI A A A + VPL++++ L
Sbjct: 118 RLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRAL 177
Query: 180 AGK--TNLTLPVPAFTVISGGKHAGNN--LAIQDIMILPI--GASSFGEALQMGSETYHH 233
G + T +P + G + LA++ ++ P+ + E +Q +HH
Sbjct: 178 FGSLTSVETFSMPQLCITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHH 237
Query: 234 LKAVIAEKYGAHGCNVGEDGGLA-PNISSIREGLDLVKEAINRTGI 278
+H +V DG L +++ + + L EA+ +
Sbjct: 238 FCQ-------SHNSSVRSDGSLHWDGFANLTDAVKLATEALRAVQL 276
|
Length = 518 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 479 | |||
| KOG2670 | 433 | consensus Enolase [Carbohydrate transport and meta | 100.0 | |
| PLN00191 | 457 | enolase | 100.0 | |
| COG0148 | 423 | Eno Enolase [Carbohydrate transport and metabolism | 100.0 | |
| PTZ00081 | 439 | enolase; Provisional | 100.0 | |
| PTZ00378 | 518 | hypothetical protein; Provisional | 100.0 | |
| PRK00077 | 425 | eno enolase; Provisional | 100.0 | |
| cd03313 | 408 | enolase Enolase: Enolases are homodimeric enzymes | 100.0 | |
| TIGR01060 | 425 | eno phosphopyruvate hydratase. Alternate name: eno | 100.0 | |
| PRK08350 | 341 | hypothetical protein; Provisional | 100.0 | |
| PF00113 | 295 | Enolase_C: Enolase, C-terminal TIM barrel domain; | 100.0 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 100.0 | |
| cd03314 | 369 | MAL Methylaspartate ammonia lyase (3-methylasparta | 100.0 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 100.0 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 100.0 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 100.0 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 100.0 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 100.0 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 100.0 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 100.0 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 100.0 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 100.0 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 100.0 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 100.0 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 100.0 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 100.0 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 100.0 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 100.0 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 100.0 | |
| PF03952 | 132 | Enolase_N: Enolase, N-terminal domain; InterPro: I | 100.0 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 99.97 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 99.97 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 99.97 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 99.96 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 99.96 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.95 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 99.94 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 99.93 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 99.73 | |
| PF02746 | 117 | MR_MLE_N: Mandelate racemase / muconate lactonizin | 99.57 | |
| COG3799 | 410 | Mal Methylaspartate ammonia-lyase [Amino acid tran | 99.54 | |
| PF07476 | 248 | MAAL_C: Methylaspartate ammonia-lyase C-terminus; | 99.51 | |
| PF01188 | 67 | MR_MLE: Mandelate racemase / muconate lactonizing | 98.97 | |
| PF13378 | 111 | MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FC | 98.79 | |
| COG1441 | 321 | MenC O-succinylbenzoate synthase [Coenzyme metabol | 97.81 | |
| PF02197 | 38 | RIIa: Regulatory subunit of type II PKA R-subunit; | 97.71 | |
| PF05186 | 42 | Dpy-30: Dpy-30 motif; InterPro: IPR007858 This mot | 97.59 | |
| PF05034 | 159 | MAAL_N: Methylaspartate ammonia-lyase N-terminus; | 97.24 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 97.22 | |
| smart00394 | 38 | RIIa RIIalpha, Regulatory subunit portion of type | 96.99 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 96.6 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 95.79 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 95.26 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 94.98 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 94.37 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 92.13 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 91.97 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 87.75 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 87.36 | |
| PF04551 | 359 | GcpE: GcpE protein; InterPro: IPR004588 This prote | 85.82 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 85.54 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 85.26 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 84.56 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 84.51 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 83.67 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 83.54 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 83.49 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 83.36 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 83.14 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 82.72 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 82.68 | |
| KOG4109 | 116 | consensus Histone H3 (Lys4) methyltransferase comp | 81.68 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 81.19 |
| >KOG2670 consensus Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-117 Score=845.70 Aligned_cols=423 Identities=62% Similarity=0.967 Sum_probs=413.3
Q ss_pred eeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC--
Q 011677 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM-- 124 (479)
Q Consensus 47 I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~-- 124 (479)
|.+|++|+|+||||+|||+|+++|++|++|+++|||+|||.+||.++||+++..|.|+|+.+++.+||+.|+|+|+++
T Consensus 3 ~~kv~aR~I~dSRGnPTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~~~ 82 (433)
T KOG2670|consen 3 IIKVKARQIYDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKKNL 82 (433)
T ss_pred ceeeehhhhhhcCCCCceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHccCC
Confidence 344999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCC-CcccccceEEeecCCccCCC
Q 011677 125 DPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKT-NLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 125 d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~-~~~~Pvp~~~~i~GG~~~~~ 203 (479)
|+.+|++||+.|..+|||.|+|++|+||+.+||+|+|++.|...|+|||+||.++.++. +..+|||+||+++||.|++|
T Consensus 83 dv~~Q~~iD~~mi~LDGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHAGn 162 (433)
T KOG2670|consen 83 DVTDQKAIDNFMIELDGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHAGN 162 (433)
T ss_pred ChhhHHHHHHHHHhccCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccccc
Confidence 99999999999999999999999999999999999999999999999999999987765 56899999999999999999
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW 283 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i 283 (479)
+|.+|||||.|.++.+++|+++++.|+|++||.++|+|||..+++|||||||+|++.+.++.|++|.+|++.+||+ ++|
T Consensus 163 ~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt-~ki 241 (433)
T KOG2670|consen 163 KLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYT-GKV 241 (433)
T ss_pred hhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCC-Cce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 875
Q ss_pred ---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhc
Q 011677 284 ---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVG 358 (479)
Q Consensus 284 ---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~g 358 (479)
+|+|++ || .+|+|+++|++|++|+++++|++++.++|.+++++|||++|||||+++||++|.+|.... ++|+|
T Consensus 242 kIgmDvAaseF~--~dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~~~iqiVg 319 (433)
T KOG2670|consen 242 KIGMDVAASEFY--KDGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKEVGIQIVG 319 (433)
T ss_pred EEEEeechhhhh--cCCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCeeeecCCcchhhHHHHHHHhhccceEEec
Confidence 999999 99 789999999999999999999999999999999999999999999999999999999889 99999
Q ss_pred CCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCC
Q 011677 359 DDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASG 438 (479)
Q Consensus 359 de~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~ 438 (479)
||+.+|||+++++++++++||++ ++|+||+|++||.++++++|+++||.+|+||+||||+|+||+||.||++++
T Consensus 320 DDLtvTnpkri~~Ai~~k~cN~L------LlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeDtFIaDL~VGl~tg 393 (433)
T KOG2670|consen 320 DDLTVTNPKRIATAIEEKACNAL------LLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETEDTFIADLVVGLGTG 393 (433)
T ss_pred CcccccCHHHHHHHHHHhhccce------EeeccccccHHHHHHHHHHHHhcCceEEEeccCCCcccchHHHhhhhhccc
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCC
Q 011677 439 QIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQC 478 (479)
Q Consensus 439 ~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 478 (479)
|||+|+||||||++||||||||||||+++++|+|++||+|
T Consensus 394 qIKtGApcRsERlaKYNqLLRIeEelg~~a~~aG~~f~~~ 433 (433)
T KOG2670|consen 394 QIKTGAPCRSERLAKYNQLLRIEEELGDDARYAGENFRNP 433 (433)
T ss_pred eeecCCCchHHHHHHHHHHHHHHHHhcccceeccccccCC
Confidence 9999999999999999999999999999999999999986
|
|
| >PLN00191 enolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-108 Score=853.59 Aligned_cols=450 Identities=66% Similarity=1.050 Sum_probs=427.3
Q ss_pred HHHHhhhcCCCcHHHHHHHhhhcCCceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCC
Q 011677 20 VNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKG 99 (479)
Q Consensus 20 ln~~~~~~p~d~~~~l~~~~~~~~~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~ 99 (479)
+|.++..+|+|||+|||+||+++.||+|++|++|+|+||+|+|||+|+|+|++|.+++++|||+|||.+||.+++|+++.
T Consensus 1 ~~~~~~~~~~d~~~~la~~~~~~~~~~I~~v~~r~ildsrG~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~ 80 (457)
T PLN00191 1 VNAAVRAKTPDPVLFIANHLKKAVMATITKVKARQIIDSRGNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKD 80 (457)
T ss_pred CcccccCCCcChHHHHHHHHhhccCCeeeEEEEEEEEcCCCCeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcc
Confidence 36788999999999999999887788999999999999999999999999999988999999999999999999999976
Q ss_pred ccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcc
Q 011677 100 TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL 179 (479)
Q Consensus 100 ~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~ 179 (479)
|.|+++.+|++.|++.|+|.|+|+|+.||++||++|.++|+|+|++++|+||++|||+|+|+++|+.+|+|||+||+++
T Consensus 81 -~~g~gv~~Av~~v~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~ 159 (457)
T PLN00191 81 -YLGKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADL 159 (457)
T ss_pred -cCCccHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999544
Q ss_pred cCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCC
Q 011677 180 AGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNI 259 (479)
Q Consensus 180 ~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~ 259 (479)
.+..+.++|+|++|+||||+|+++.+++||||++|.++.+++|+++++.++|+.+|++|+.|+|..++++||+|||+|++
T Consensus 160 gg~~~~~lP~p~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGg~ap~~ 239 (457)
T PLN00191 160 AGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNI 239 (457)
T ss_pred CCCCCccccceeEEeecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcCccCCCCCcCCCC
Confidence 33446789999999999999999999999999999999999999999999999999999999998788999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeee
Q 011677 260 SSIREGLDLVKEAINRTGIPSSKW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIE 335 (479)
Q Consensus 260 ~~~~~~l~~v~~ai~~~g~~~~~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iE 335 (479)
++++++|++|++|++++|++ ++| +|||++ ||++ +++|+++|++++++++..+|++|++++|.+|+++|||.|||
T Consensus 240 ~~~~eal~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~-~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IE 317 (457)
T PLN00191 240 QDNKEGLELLKEAIEKAGYT-GKIKIGMDVAASEFYTK-DKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIE 317 (457)
T ss_pred CCHHHHHHHHHHHHHHcCCC-CceEEEeehhhhhhccc-CCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEE
Confidence 99999999999999999998 655 999999 9943 78999987765555555689999999999999999999999
Q ss_pred cCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeE
Q 011677 336 DPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGV 414 (479)
Q Consensus 336 dP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~ 414 (479)
|||+++|+++|++|+++. +||+|||++++|+++++++++.+++|++ +||++|+||||++++++++|+++|+.+
T Consensus 318 DPl~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i------~iKl~qiGGITea~~~a~lA~~~G~~~ 391 (457)
T PLN00191 318 DPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNAL------LLKVNQIGTVTESIEAVKMSKAAGWGV 391 (457)
T ss_pred CCCCcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEE------EecccccCCHHHHHHHHHHHHHCCCEE
Confidence 999999999999999999 9999999988999999999999999999 999999999999999999999999999
Q ss_pred EEecCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCC
Q 011677 415 VISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQC 478 (479)
Q Consensus 415 ~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 478 (479)
|+||+++||+|++++|||||++++++|+|+|+|+||++||||||||||+|++.++|.|..|+++
T Consensus 392 ~ishrsgET~d~~~Adlava~~~~~ik~G~~~r~er~aKyN~llriee~l~~~~~~~~~~~~~~ 455 (457)
T PLN00191 392 MTSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGDEAVYAGENFRKP 455 (457)
T ss_pred EeCCCCccchHHHHHHHHHHhCCCccccCCCcchHHHHHHHHHHHHHHHhcccceecccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999888764
|
|
| >COG0148 Eno Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-106 Score=792.44 Aligned_cols=410 Identities=51% Similarity=0.775 Sum_probs=395.0
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV 122 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li 122 (479)
|..|++|.+|+|+||||+|||+|+|+|++|.+ ++++|||+|||.+||.++||++ .+|.|+|+.+|++.+|+.|+|.|+
T Consensus 1 m~~I~~i~aReIlDSRGnpTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd-~ry~gkGV~~AV~nVn~~Iap~Li 79 (423)
T COG0148 1 MSAIEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGD-SRYLGKGVLKAVANVNEIIAPALI 79 (423)
T ss_pred CcccceeEEEEEEcCCCCceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCc-cccccccHHHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999988 7889999999999999999999 899999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCC
Q 011677 123 GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAG 202 (479)
Q Consensus 123 G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~ 202 (479)
|+|+.||..||+.|.++|+|+|+|++|+||+.|||+|+++|+|+.+|+|||+|||| .....+|+|++|+++||.|++
T Consensus 80 G~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG---~~a~~lPvPm~NvinGG~HA~ 156 (423)
T COG0148 80 GLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGG---LNALVLPVPMMNVINGGAHAD 156 (423)
T ss_pred CCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcC---ccccccccceeeeecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999 446789999999999999999
Q ss_pred CcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-
Q 011677 203 NNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS- 281 (479)
Q Consensus 203 ~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~- 281 (479)
|.+++|||||+|.++.++.|+++++.++|+++|++|+.| |. .+.|||||||+|++...+++|+.+.+|++++|+.|+
T Consensus 157 n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~-g~-~t~vGDEGgfAP~l~~~eeald~i~~Aie~agy~~g~ 234 (423)
T COG0148 157 NNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEK-GL-STGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGE 234 (423)
T ss_pred CCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhc-Cc-cccccCCcccCCCCCccHHHHHHHHHHHHHhCCCCCc
Confidence 999999999999999999999999999999999999988 65 456999999999999999999999999999999986
Q ss_pred ce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---h
Q 011677 282 KW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---Q 354 (479)
Q Consensus 282 ~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~ 354 (479)
+| +|||++ || ++++|.++ + ..+|++|++++|.+|+++|||.+|||||+++||++|++|++++ +
T Consensus 235 ~i~~alD~Aasefy--~~~~Y~~~-------~-~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kv 304 (423)
T COG0148 235 DIALALDVAASEFY--KDGKYVLE-------G-ESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKV 304 (423)
T ss_pred ceeeeehhhhhhhc--cCCeeeec-------C-cccCHHHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHhhCCeE
Confidence 45 999999 99 57779987 2 4789999999999999999999999999999999999999999 8
Q ss_pred hhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhh
Q 011677 355 QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVG 434 (479)
Q Consensus 355 ~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~ 434 (479)
+|||||+++||+++++++++++++|.| .||+||+||+||+++.+++|+++|+.+|+|||||||+|++++|||||
T Consensus 305 qivGDDLfvTN~~~l~~gi~~g~aNai------LIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa 378 (423)
T COG0148 305 QIVGDDLFVTNPKRLKKGIEKGAANAI------LIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVA 378 (423)
T ss_pred EEECCcceecCHHHHHHHHHhccCceE------EEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccc
Q 011677 435 LASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDY 475 (479)
Q Consensus 435 ~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~ 475 (479)
++++|||+|.|+|+||++||||||||||+|+..+.|.|.++
T Consensus 379 ~~agqIKTGs~sRseRiaKyNqLlrIEeeLg~~a~y~g~~~ 419 (423)
T COG0148 379 TNAGQIKTGSLSRSERVAKYNELLRIEEELGDKARYAGIKE 419 (423)
T ss_pred hCCCeeecCCCcchhHHHHHHHHHHHHHHhhhccccCChHh
Confidence 99999999999999999999999999999999999999875
|
|
| >PTZ00081 enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-104 Score=821.78 Aligned_cols=424 Identities=59% Similarity=0.926 Sum_probs=404.1
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
||+|++|++|+|+||+|+|||+|+|+|++|.+++++|||+|||++||.++||+++.+|.|+++.+|++.+++.|+|.|+|
T Consensus 1 ~~~I~~v~~r~i~dSrg~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~v~~~i~~~LiG 80 (439)
T PTZ00081 1 MSTIKSIKAREILDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVENVNEIIAPALIG 80 (439)
T ss_pred CcEEEEEEEEEEecCCCCceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999988999999999999999999999988999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHh-hhccCC-----CCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCC--CCcccccceEEee
Q 011677 124 MDPILQSQIDQAMID-LDKTEK-----KGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGK--TNLTLPVPAFTVI 195 (479)
Q Consensus 124 ~d~~~~~~id~~l~~-~~~~~~-----~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~--~~~~~Pvp~~~~i 195 (479)
+|+.+|++||++|.+ +|+|+| ++++|+||++|||+|+|+++|+.+|+|||+||++..+. .+.++|+|++|+|
T Consensus 81 ~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~~~lP~P~~nii 160 (439)
T PTZ00081 81 KDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVI 160 (439)
T ss_pred CChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCCccccceeEEec
Confidence 999999999999999 999999 99999999999999999999999999999999654333 3458999999999
Q ss_pred cCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHh
Q 011677 196 SGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINR 275 (479)
Q Consensus 196 ~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~ 275 (479)
|||+|+++++++||||++|.++.++.|+++++.++|+.+|++|+.|+|..++++||+|+|+|++++++++|+++++|+++
T Consensus 161 nGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGgfap~~~~~eeal~ll~eAi~~ 240 (439)
T PTZ00081 161 NGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKK 240 (439)
T ss_pred cCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887789999999999999999999999999999
Q ss_pred cCCCCCce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 276 TGIPSSKW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 276 ~g~~~~~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+|++ +++ +|||++ ||+.++++|+++|++|.+++++.+|++|++++|.+++++|||.||||||+++|+++|++|++
T Consensus 241 ag~~-~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~ 319 (439)
T PTZ00081 241 AGYE-GKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTA 319 (439)
T ss_pred cCCc-CceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHH
Confidence 9998 655 999999 99766789999887765444457899999999999999999999999999999999999999
Q ss_pred hh---hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHH
Q 011677 352 IC---QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFI 428 (479)
Q Consensus 352 ~~---~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~ 428 (479)
++ +||+|||++++|+++++++++.+++|++ +||++|+||||++++++++|+++|+.+++||++|||+|+++
T Consensus 320 ~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i------~iKvnqiGGITe~l~~a~lA~~~Gi~~iishrsgETed~~i 393 (439)
T PTZ00081 320 AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNAL------LLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFI 393 (439)
T ss_pred hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEE------EeccccccCHHHHHHHHHHHHHcCCcEEEeCCCchhHHHHH
Confidence 99 9999999988999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCcc
Q 011677 429 ADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGED 474 (479)
Q Consensus 429 ~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~ 474 (479)
+|||||++++|||+|+|+|+||++||||||||||+|++++.|.|++
T Consensus 394 adLAVa~~~~~iK~G~~~r~er~aKyN~llriee~l~~~~~~~~~~ 439 (439)
T PTZ00081 394 ADLVVGLGTGQIKTGAPCRSERLAKYNQLLRIEEELGSNAVYAGEN 439 (439)
T ss_pred HHHHHHcCCCceecCCCcchHHHHHHHHHHHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999999999999998864
|
|
| >PTZ00378 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-102 Score=798.25 Aligned_cols=442 Identities=20% Similarity=0.274 Sum_probs=408.4
Q ss_pred chHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhcC-CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecC
Q 011677 2 SVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAV-PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVP 80 (479)
Q Consensus 2 ~~~~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~~-~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~p 80 (479)
|-+.|+++|+++++|++++|+++..+|+||++|||.||++++ .++|++|.+|+|+||+|+|||+|+|+|.+|.+ +|
T Consensus 5 ~~~~y~~~~~~~~~l~ea~~~~v~~~~~d~~~~l~~~f~~~~~~~~I~~i~areIlDSrGnPTVev~v~l~~G~~---vP 81 (518)
T PTZ00378 5 SWKRYDDEFKLSGILTEAARSCVDAHPARPKEYLAAYFREKCSGDEIRALVHNEVLSPAGETVLRFTLELLNGME---VS 81 (518)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCeeeEEEEEEEEcCCCCeeEEEEEEECCCCE---EC
Confidence 568999999999999999999999999999999999999877 77999999999999999999999999999974 99
Q ss_pred CCCCCCceeeeeeccCCCCc-c-ccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHH
Q 011677 81 SGDPSGMYEALELRDGDKGT-Y-LGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSI 158 (479)
Q Consensus 81 s~~~~G~~Ea~~~~d~~~~~-y-~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~Avsi 158 (479)
||+||| ||.++||+++.+ | .|+++.+|+. +.|+|.|+|+++.||.+||+.|.++|+|+|++++|+||+.||||
T Consensus 82 SGAStG--EA~elRDgd~~~~~g~gkgV~~Av~---~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~ 156 (518)
T PTZ00378 82 SGALLS--PSHGERDGEADATLDPAEYTTEALQ---NSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSI 156 (518)
T ss_pred CCCccc--ceeeeecCCcccccCCCccHHHHHH---hhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHH
Confidence 999999 999999998665 7 7889999977 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchhHHHHhcccCC----CCcccccceEEeecCCccCCCcccccceeeccCCC--CcHHHHHHHHHHHHH
Q 011677 159 AACKAGAAEKEVPLYKHIADLAGK----TNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGA--SSFGEALQMGSETYH 232 (479)
Q Consensus 159 Al~da~ak~~g~PLy~lLgg~~~~----~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~--~~~~ea~~~~~e~~~ 232 (479)
|++.++|+..++|||+|||++.+. ....+|+|++|+||||+|+++++++|||||+|.++ .++.|+++++.|+|+
T Consensus 157 A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh 236 (518)
T PTZ00378 157 VASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLCITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFH 236 (518)
T ss_pred HHHHHHHHHcCCCHHHHhhccccccccCCCcccCccceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999985321 24579999999999999999999999999999977 899999999999999
Q ss_pred HHHHHHHhhhCCCCcccCCCCCC-CCCCCchHHHHHHHHHHHHhcCCCCC-ce---eecccc-c------------cccc
Q 011677 233 HLKAVIAEKYGAHGCNVGEDGGL-APNISSIREGLDLVKEAINRTGIPSS-KW---SDCKSS-M------------HNIY 294 (479)
Q Consensus 233 ~lk~~l~~K~G~~~~~vg~~G~~-~~~~~~~~~~l~~v~~ai~~~g~~~~-~i---iD~aa~-~------------~~~~ 294 (479)
+|++ | ..+++|||||| .|++++++++|++|.+|++++||+|+ +| +|||+| | |+..
T Consensus 237 ~L~~------~-~~t~vGDEGGfaap~~~~~eeAL~li~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~ 309 (518)
T PTZ00378 237 HFCQ------S-HNSSVRSDGSLHWDGFANLTDAVKLATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEA 309 (518)
T ss_pred HHhh------c-ccCccCCCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhccc
Confidence 9953 3 35789999999 67788999999999999999999986 46 999999 9 9432
Q ss_pred C-c---eeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCC--ceeeecCCCccCHHHHHHHHhhh---hhhhcCCcccc-
Q 011677 295 S-T---KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYP--IVSIEDPFDKEDWEHTKSVLQIC---QQVVGDDLLMS- 364 (479)
Q Consensus 295 ~-g---~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~--i~~iEdP~~~~D~~g~~~L~~~~---~~I~gde~~~t- 364 (479)
+ + +|.+. + +...+|++||+++|.+|+++|| |.+|||||+++||++|++|++++ |+|+|||+++|
T Consensus 310 k~~~e~~Y~l~-~-----~~~~~t~~elieyy~~li~kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~ 383 (518)
T PTZ00378 310 KDDCEVLYSLF-P-----GEPDVTGDQLSEYVREQLQAVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARS 383 (518)
T ss_pred cCCCceeeeec-C-----CCCCCCHHHHHHHHHHHHHHCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCC
Confidence 1 2 68874 1 1234799999999999999999 99999999999999999999999 99999999999
Q ss_pred CHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEE---EecCCCCCchhHHHHhHhhcCCCCcc
Q 011677 365 NPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVV---ISHRSGETEDSFIADLSVGLASGQIK 441 (479)
Q Consensus 365 ~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~---v~h~~get~d~~~~dlAv~~~~~~ik 441 (479)
|+++++++++.++||.+ +||+||+|||||+++++++|+++|+.+| +||+|| +|+|++|||||++++|||
T Consensus 384 n~~ri~~gi~~~~~Nai------LIK~NQIGTlSEtieav~lA~~~g~~~v~v~vShRSG--eD~~IAdLAVa~ga~~IK 455 (518)
T PTZ00378 384 EYKKVESGLRGLWTSNI------VLNPCAIGTLSDVVEIVRAVGEDEGRAVTVLVQTLAG--NAATAAHLAVAMGARFLC 455 (518)
T ss_pred CHHHHHHHHhcCCCceE------EEccccceeHHHHHHHHHHHHHcCCcEEccccCCCcC--CccHHHHHHHHcCCCccc
Confidence 89999999999999999 9999999999999999999999999999 999999 799999999999999999
Q ss_pred cCCCCchhHHHHhHHHHHHHHHhCCCccccC
Q 011677 442 AGAPCRGERLAKYNQLLHIEEELGDHAIYAG 472 (479)
Q Consensus 442 ~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~ 472 (479)
+|+|+|+||++||||||||||||++....+.
T Consensus 456 tGa~~r~ER~aKyNqLlrIeeeLg~~~~l~~ 486 (518)
T PTZ00378 456 SGGLFSAHQCEVVSQLASRQDELTHSRMLAP 486 (518)
T ss_pred cCCCccchHHHHHHHHHHHHHHhCcCCccCC
Confidence 9999999999999999999999987665443
|
|
| >PRK00077 eno enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-94 Score=751.02 Aligned_cols=413 Identities=50% Similarity=0.777 Sum_probs=392.5
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV 122 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li 122 (479)
||+|++|++|+|+||+|+|||+|+|+|++|.+ ++.+|||+|+|.+||.+++|+++.+|.|+++.+++..|++.|+|.|+
T Consensus 1 ~~~I~~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~v~~~iap~Li 80 (425)
T PRK00077 1 MSKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVENVNEEIAPALI 80 (425)
T ss_pred CCeEEEEEEEEEEcCCCCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999976 99999999999999999999998899999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCC
Q 011677 123 GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAG 202 (479)
Q Consensus 123 G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~ 202 (479)
|+||.+|++||+.|.+++++.+++++|.||++|||+|+||++||.+|+|||+|||| ..+.++|+|+|++++||.|++
T Consensus 81 G~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG---~~~~~~pvp~~n~i~GG~ha~ 157 (425)
T PRK00077 81 GLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGG---PNAKVLPVPMMNIINGGAHAD 157 (425)
T ss_pred CCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCC---CCcccccceeEEEEccccccc
Confidence 99999999999999999999999999999999999999999999999999999998 334579999999999999999
Q ss_pred CcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-
Q 011677 203 NNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS- 281 (479)
Q Consensus 203 ~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~- 281 (479)
+++++||||++|.+..+++++++++.++|+++|.+++.| |. .+++|++|+|.|++++++++|++|++|++++|++++
T Consensus 158 ~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~-g~-~~~vGdeGg~~p~~~~~~e~l~~lreAi~~ag~~~G~ 235 (425)
T PRK00077 158 NNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGE 235 (425)
T ss_pred CchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhc-CC-CCcCCCcCCcCCCccchHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999877 64 578999999999999999999999999999999975
Q ss_pred ce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---h
Q 011677 282 KW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---Q 354 (479)
Q Consensus 282 ~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~ 354 (479)
++ ||+|++ || ++++|+++ ++.||+++++++|.+++++|||.||||||+++|+++|++|++++ +
T Consensus 236 di~l~lD~aas~~~--~~~~y~~~--------~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~~~~i 305 (425)
T PRK00077 236 DIALALDCAASEFY--KDGKYVLE--------GEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKLGDKV 305 (425)
T ss_pred ceEEEEehhhhhcc--cCCeeecc--------CCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhcCCCC
Confidence 44 999999 99 57899885 24699999999999999999999999999999999999999998 9
Q ss_pred hhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhh
Q 011677 355 QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVG 434 (479)
Q Consensus 355 ~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~ 434 (479)
||+|||++++++++++++++.+++|++ +||++|+||||++++++++|+++|+.+|+||+++||+|++++|||||
T Consensus 306 pI~gdE~~~t~~~~~~~~i~~~a~d~v------~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava 379 (425)
T PRK00077 306 QLVGDDLFVTNTKRLKKGIEKGAANSI------LIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVA 379 (425)
T ss_pred eEEcCCCccCCHHHHHHHHHhCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHH
Confidence 999999888889999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccC-ccccC
Q 011677 435 LASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAG-EDYRQ 477 (479)
Q Consensus 435 ~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~-~~~~~ 477 (479)
++++|+|+|+|+|+||++||||||||||+|++.+.|.| ..|+.
T Consensus 380 ~~~~~ik~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 423 (425)
T PRK00077 380 TNAGQIKTGSLSRSERIAKYNQLLRIEEELGDAARYAGKKAFKN 423 (425)
T ss_pred hCCccccCCCCcchHHHHHHHHHHHHHHHhcccceecchhhccc
Confidence 99999999999999999999999999999999999999 46654
|
|
| >cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-93 Score=737.28 Aligned_cols=399 Identities=54% Similarity=0.827 Sum_probs=377.9
Q ss_pred EEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCC
Q 011677 49 KIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPI 127 (479)
Q Consensus 49 ~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~ 127 (479)
+|++|+|+||+|+|||+|+|+|++|.+ ++.+|+|+|+|.+||.+++|+++.+|.|+++.+++..|++.|+|.|+|+||.
T Consensus 1 ~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~ 80 (408)
T cd03313 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVT 80 (408)
T ss_pred CeEEEEEecCCCCceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChh
Confidence 589999999999999999999999877 9999999999999999999999889999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccc
Q 011677 128 LQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAI 207 (479)
Q Consensus 128 ~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~ 207 (479)
+|++||+.|.+++++++++++|+||++|||||+||++||.+|+|||+|||| ..+.++|+|+||+|+||+|+++++++
T Consensus 81 dq~~id~~l~~~dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg---~~~~~lpvp~~nvi~GG~ha~~~~~i 157 (408)
T cd03313 81 DQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGG---LAAYVLPVPMFNVINGGAHAGNKLDF 157 (408)
T ss_pred hHHHHHHHHHHhcCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcC---CCCcccceeeEEEecCcccccCcccc
Confidence 999999999999999999999999999999999999999999999999998 33568999999999999999999999
Q ss_pred cceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-ce---
Q 011677 208 QDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KW--- 283 (479)
Q Consensus 208 ~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~-~i--- 283 (479)
||||++|.++.+++++++++.++|+++|++|+.|.|..++++|++|+|.|++++++++|+++++|++++|+.++ ++
T Consensus 158 qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~ 237 (408)
T cd03313 158 QEFMIVPVGAPSFSEALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIA 237 (408)
T ss_pred ccccccccCccCHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 99999999999999999999999999999999887767799999999999999999999999999999999874 44
Q ss_pred eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---hhhhcC
Q 011677 284 SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---QQVVGD 359 (479)
Q Consensus 284 iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~~I~gd 359 (479)
||+|++ || ++++|.+.+. .++.||++|+++++.+++++|||.||||||+++|+++|++|++++ +||+||
T Consensus 238 lD~aas~~~--~~~~y~~~~~-----~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gd 310 (408)
T cd03313 238 LDVAASEFY--DEGKYVYDSD-----EGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGD 310 (408)
T ss_pred Eehhhhhhc--ccCcceeccC-----CCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcC
Confidence 999999 99 4677776411 236789999999999999999999999999999999999999996 999999
Q ss_pred CccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCC
Q 011677 360 DLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQ 439 (479)
Q Consensus 360 e~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ 439 (479)
|++++++++++++++.+++|++ +||++|+||||++++++++|+++|+.+|+||+++||+|++++|||||++++|
T Consensus 311 E~~~~~~~~~~~~i~~~a~d~v------~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~~ 384 (408)
T cd03313 311 DLFVTNPERLKKGIEKKAANAL------LIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQ 384 (408)
T ss_pred CcccCCHHHHHHHHHhCCCCEE------EEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcCc
Confidence 9888889999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhHHHHhHHHHHHHHH
Q 011677 440 IKAGAPCRGERLAKYNQLLHIEEE 463 (479)
Q Consensus 440 ik~G~~~~~er~~kyn~ll~ie~~ 463 (479)
||+|+|+|+||++|||||||||||
T Consensus 385 ik~G~~~r~er~~k~n~ll~i~~~ 408 (408)
T cd03313 385 IKTGAPCRSERTAKYNQLLRIEEE 408 (408)
T ss_pred cccCCCcchHHHHHHHHHHHHhhC
Confidence 999999999999999999999985
|
The reaction is facilitated by the presence of metal ions. |
| >TIGR01060 eno phosphopyruvate hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-92 Score=734.99 Aligned_cols=414 Identities=50% Similarity=0.779 Sum_probs=389.4
Q ss_pred eeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCC
Q 011677 47 ITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMD 125 (479)
Q Consensus 47 I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d 125 (479)
|++|++|+|+||+|+|||+|+|+|++|.+ ++.+|||+|+|.+||.+++|+++.+|.|+++.+++..+++.|+|.|+|+|
T Consensus 1 i~~i~~r~i~dsrg~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d 80 (425)
T TIGR01060 1 IKDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMD 80 (425)
T ss_pred CcEEEEEEEecCCCCceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999987 89999999999999999999998899999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcc
Q 011677 126 PILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNL 205 (479)
Q Consensus 126 ~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l 205 (479)
|.||++||+.|.+++++.+++++|.||++|||||+||++||.+|+|||+|||| ..+.++|+|++++++||.|+++++
T Consensus 81 ~~d~~~id~~l~~~d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG---~~~~~lPvp~~n~i~GG~~a~~~~ 157 (425)
T TIGR01060 81 AFDQREIDQIMIELDGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGG---KNAYVLPVPMMNIINGGAHADNNL 157 (425)
T ss_pred HHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCC---CCCCceeeEEEEeecccccccCcc
Confidence 99999999999988899888889999999999999999999999999999998 345689999999999999999999
Q ss_pred cccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-ce-
Q 011677 206 AIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KW- 283 (479)
Q Consensus 206 ~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~-~i- 283 (479)
++||||++|.++.+++++++++.++|+++|+.++.| |. .+++|++|+|.|+++++++.|+.++++++++|+.++ ++
T Consensus 158 ~~qe~~i~p~~a~~~~e~~~~~~~g~~~lK~~l~~~-~~-~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~ 235 (425)
T TIGR01060 158 DFQEFMIMPVGAKSFREALRMGAEVFHALKKLLKEK-GL-ATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVA 235 (425)
T ss_pred CHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceE
Confidence 999999999999999999999999999999988877 64 577899999999988899999999999999888864 44
Q ss_pred --eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---hhhh
Q 011677 284 --SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---QQVV 357 (479)
Q Consensus 284 --iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~~I~ 357 (479)
+|+|++ ||+.++++|++.. .++.+|++|+++++.+++++|+|.||||||+++|+++|++|++++ +||+
T Consensus 236 l~lD~aas~~~~~~~~~y~~~~------~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~ 309 (425)
T TIGR01060 236 LALDCAASEFYDEEDGKYVYKG------ENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIV 309 (425)
T ss_pred EEEEccccccccccCceeeecC------cccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEE
Confidence 999998 9976688999862 124589999999998888999999999999999999999999998 9999
Q ss_pred cCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCC
Q 011677 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 358 gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~ 437 (479)
|||++++++++++++++.+++|++ +||++|+||||++++++++|+++|+.+|++|+++||+|++++|||||+++
T Consensus 310 gDE~~~t~~~~~~~~i~~~a~d~v------~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~ 383 (425)
T TIGR01060 310 GDDLFVTNTEILREGIEMGVANSI------LIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNA 383 (425)
T ss_pred eCCCcccCHHHHHHHHHhCCCCEE------EecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCc
Confidence 999988899999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCchhHHHHhHHHHHHHHHhCCCccccC-ccccC
Q 011677 438 GQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAG-EDYRQ 477 (479)
Q Consensus 438 ~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~-~~~~~ 477 (479)
+|+|+|+|+|+||++||||||||||+|++.+.|.| ..|+.
T Consensus 384 ~~ik~g~~~~~er~~kyn~ll~i~~~l~~~~~~~~~~~~~~ 424 (425)
T TIGR01060 384 GQIKTGSLSRSERIAKYNQLLRIEEELGDSARYAGKNTFYR 424 (425)
T ss_pred CccccCCCchHHHHHHHHHHHHHHHHhcccceecchhccCC
Confidence 99999999999999999999999999999999999 46653
|
Alternate name: enolase |
| >PRK08350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-81 Score=610.93 Aligned_cols=330 Identities=25% Similarity=0.336 Sum_probs=302.6
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
|++|++|.+|+|+||||+|||+|+|+|++|+.|+++|| |+++.+|. +++.+|++.+|+.|+|+|+|
T Consensus 1 M~~I~~i~aReIlDSRGnPTVEveV~~~~g~gra~vPS-------------D~d~~ry~-~gV~~AV~nVn~~Iap~LiG 66 (341)
T PRK08350 1 MTVIENIIGRVAVLRGGKYSVEVDVITDSGFGRFAAPI-------------DENPSLYI-AEAHRAVSEVDEIIGPELIG 66 (341)
T ss_pred CceeEEEEEEEEEcCCCCceEEEEEEECCcEEEEEecC-------------CCCccccc-chHHHHHHHHHHHHHHHHcC
Confidence 55799999999999999999999999999955999998 33445788 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+|+.+|++||+.|.++|||+|++++|+||+.|||+|+++|+|+.+|+|||+|||| .....+|+|++|+||||
T Consensus 67 ~d~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylgg---~~~~~lPvP~~NiiNGG----- 138 (341)
T PRK08350 67 FDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIGG---TFTTELPVPILEFAEDE----- 138 (341)
T ss_pred CCHHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhcC---CCCCccCccceeeecCC-----
Confidence 9999999999999999999999999999999999999999999999999999987 23458999999999997
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-c
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-K 282 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~-~ 282 (479)
++ ||||+| .|+++ +.|+|+++|.+|+. +.+++|+++.+|++++||+|+ +
T Consensus 139 --~~-EFmI~p------~ea~~-~~ev~~~lk~il~~--------------------~~eeaL~ll~eAi~~aGy~~g~d 188 (341)
T PRK08350 139 --NF-EYYVLV------RDLME-ITDVVDAVNKILEN--------------------SKEVSLEGLSKASEKAGDELGLE 188 (341)
T ss_pred --ce-EEEECc------hHhhh-hHHHHHHHHHHHhh--------------------ChHHHHHHHHHHHHHhCCCcccc
Confidence 45 999998 68999 78999999998863 358999999999999999975 4
Q ss_pred e---eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh--hhhh
Q 011677 283 W---SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVV 357 (479)
Q Consensus 283 i---iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~ 357 (479)
+ +|+. ..+|++|++ +|+++|||.+|| ||+++ ++|++|+++. ++|+
T Consensus 189 v~~~lD~~-----------------------~~~t~~eli----~l~~kYPIvsIE-p~~E~--~gw~~lt~~g~~iqiV 238 (341)
T PRK08350 189 VALGIAQK-----------------------REMETEKVL----NLVEDNNIAYIK-PIGDE--ELFLELIAGTHGVFID 238 (341)
T ss_pred EEEeeccC-----------------------CCCCHHHHH----HHHHHCCEEEEE-cCCcc--hHHHHHHhcCCceEEE
Confidence 5 6661 135889998 789999999999 99966 9999999998 9999
Q ss_pred cCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCC
Q 011677 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 358 gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~ 437 (479)
|||+++||+.+ ++++||++ +||+||+||+||+++++++|+++||.+|+|||||||+|+|++|||||+++
T Consensus 239 GDDLfvTN~~~-----~~~~~Nai------LiK~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGETeD~~IAdLaVa~~a 307 (341)
T PRK08350 239 GEYLFRTRNIL-----DRRYYNAL------SIKPINLGTLTDLYNLVNDVKSERITPILAEAKYESADEALPHLAVGLRC 307 (341)
T ss_pred cccccccChhH-----hhCccceE------EEeeccceeHHHHHHHHHHHHHcCCeEEeecCCCCCcchhHHHHHHHhCC
Confidence 99999999765 88999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCchhHHHHhHHHHHHHHHhCCCccc
Q 011677 438 GQIKAGAPCRGERLAKYNQLLHIEEELGDHAIY 470 (479)
Q Consensus 438 ~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~ 470 (479)
+||| +|+||++||||||||||+|+..+..
T Consensus 308 gqIK----~R~ER~aKyN~LlrIee~lg~~~~~ 336 (341)
T PRK08350 308 PAML----IHKDSVEKINELNRIAEDLGERGRI 336 (341)
T ss_pred Cccc----cchhHHHHHHHHHHHHHHcCCCeEE
Confidence 9999 8999999999999999999876543
|
|
| >PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-77 Score=588.55 Aligned_cols=287 Identities=55% Similarity=0.905 Sum_probs=253.4
Q ss_pred cccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHH
Q 011677 185 LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIRE 264 (479)
Q Consensus 185 ~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~ 264 (479)
..+|+|++|+||||+|+++++++|||||+|.++.+++|+++++.++|+++|++|+.|+|...+++||+|||+|+++++++
T Consensus 2 ~~lPvP~~nvinGG~ha~~~l~~QEfmI~P~ga~s~~eal~~~~eVy~~Lk~il~~k~G~~~t~vgDeGGfaP~~~~~ee 81 (295)
T PF00113_consen 2 YTLPVPMFNVINGGKHAGNKLDFQEFMIVPVGADSFSEALRMGAEVYHALKKILKKKGGKFATNVGDEGGFAPNIDDNEE 81 (295)
T ss_dssp EEE-EEEEEEEE-GGGSSSSCSSSEEEEEETT-SSHHHHHHHHHHHHHHHHHHHHHHH-GGGGSBETTSSB--SBSSHHH
T ss_pred cccCcceEEEEcCccCCCCcccceEEEEEeccCCCHHHHHHhhhHHHHHHHHHHhhcccccccccCcccccCCCCcchhH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCc
Q 011677 265 GLDLVKEAINRTGIPSSKW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDK 340 (479)
Q Consensus 265 ~l~~v~~ai~~~g~~~~~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~ 340 (479)
+|++|.+|++++|+++ +| +||||| ||++++|+|+++++.+.+++++.+|++||+++|.+|+++|||.+|||||++
T Consensus 82 aL~ll~~Ai~~aGy~~-~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YPIvsIEDpf~e 160 (295)
T PF00113_consen 82 ALDLLMEAIKEAGYEP-DVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYPIVSIEDPFDE 160 (295)
T ss_dssp HHHHHHHHHHHTT-TT-TBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-EEEEESSS-T
T ss_pred HHHHHHHHHHHccccc-eeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhcCeEEEEccccc
Confidence 9999999999999995 54 999999 999899999999877666666789999999999999999999999999999
Q ss_pred cCHHHHHHHHhhh---hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEe
Q 011677 341 EDWEHTKSVLQIC---QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 341 ~D~~g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~ 417 (479)
+||++|++|++++ |+|+|||+++||++++++++++++||++ +||+||+||+||+++++++|+++||.+|+|
T Consensus 161 dD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~------llK~NQigTvte~lea~~~a~~~g~~~vvS 234 (295)
T PF00113_consen 161 DDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNAL------LLKPNQIGTVTETLEAVKLAKSAGWGVVVS 234 (295)
T ss_dssp T-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEE------EE-HHHHSSHHHHHHHHHHHHHTT-EEEEE
T ss_pred cchHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccch------hhhhhhhHHHHHHHHHHHHHHHCCceeecc
Confidence 9999999999999 9999999999999999999999999999 999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCC
Q 011677 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQC 478 (479)
Q Consensus 418 h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 478 (479)
|++|||+|+|++|||||++++|||+|+|+|+||++||||||||||+|++.++|+|++||+|
T Consensus 235 ~rsgEteD~~iadLaVg~~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~a~~~g~~~~~~ 295 (295)
T PF00113_consen 235 HRSGETEDTFIADLAVGLGAGQIKTGAPCRGERIAKYNRLLRIEEELGSKAKYAGKNFRKP 295 (295)
T ss_dssp --SS--S--HHHHHHHHTT-SEEEEESSSSHHHHHHHHHHHHHHHHHGGGSEE-GGGCTSC
T ss_pred CCCCCcCchhHHHHHhccCcCeEecccchhhHHHHHhhHHHHHHHHcCCCCEECChhhhCc
Confidence 9999999999999999999999999999999999999999999999999999999999986
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E .... |
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=340.77 Aligned_cols=328 Identities=15% Similarity=0.178 Sum_probs=240.4
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCcccccc-------HHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNS-------VNRAVKNINERISEALVGMDPILQSQIDQ 134 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~-------~~~av~~i~~~l~p~LiG~d~~~~~~id~ 134 (479)
.+|.|+|+|++|.+ |||||.+ ..|.|++ ..++...|++.++|.|+|+|+.+.+++++
T Consensus 50 ~~vlV~i~tddG~~----------G~GE~~~------~~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~ 113 (408)
T TIGR01502 50 ESLSVLLVLEDGQV----------VHGDCAA------VQYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAE 113 (408)
T ss_pred cEEEEEEEECCCCE----------EEEEeec------ceeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHH
Confidence 46999999999984 9999876 2566654 66777789889999999999999999999
Q ss_pred HHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeecc
Q 011677 135 AMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILP 214 (479)
Q Consensus 135 ~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p 214 (479)
.|..... +.+ +...+++|||+||||+.||..|+|||++||+..+....+-++|++..++. ....+
T Consensus 114 ~~~~~~~--~~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~-~~~~~----------- 178 (408)
T TIGR01502 114 VFEKMTV--NRN-LHTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGD-DRYDN----------- 178 (408)
T ss_pred HHHHHhh--cCc-chhHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeec-cCCCC-----------
Confidence 9987531 111 33567799999999999999999999999952211112345676765421 00000
Q ss_pred CCCCcHHHHHHHHHHH-HHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhc---CCCCCce-eecccc
Q 011677 215 IGASSFGEALQMGSET-YHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRT---GIPSSKW-SDCKSS 289 (479)
Q Consensus 215 ~~~~~~~ea~~~~~e~-~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~---g~~~~~i-iD~aa~ 289 (479)
.+..+.++.+...++ |+.+| |+|.. ..++.+.++.+++.++++ |+. ..+ +|+|..
T Consensus 179 -~d~m~~~a~~~~~~G~~~~~K-----kvG~~-------------~~k~~~~~~~~~~ri~~lr~~g~~-~~l~vDaN~~ 238 (408)
T TIGR01502 179 -VDKMILKEVDVLPHGLINSVE-----ELGLD-------------GEKLLEYVKWLRDRIIKLGREGYA-PIFHIDVYGT 238 (408)
T ss_pred -HHHHHHHHHHHHhccCcccee-----eecCC-------------HHHhhhhHHHHHHHHHHhhccCCC-CeEEEEcCCC
Confidence 012334444444443 44444 23321 112334556666665443 333 356 998531
Q ss_pred cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHh---hCCceeeecCCCccC----HHHHHHHHhh-----h-hhh
Q 011677 290 MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCA---DYPIVSIEDPFDKED----WEHTKSVLQI-----C-QQV 356 (479)
Q Consensus 290 ~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~---~~~i~~iEdP~~~~D----~~g~~~L~~~-----~-~~I 356 (479)
. | .-+.||++++++++.++-+ +|++ |||||++++| +++|++|+++ + +||
T Consensus 239 ~-----~------------~~~~~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI 300 (408)
T TIGR01502 239 I-----G------------EAFGVDIKAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEI 300 (408)
T ss_pred c-----c------------cccCCCHHHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceE
Confidence 0 0 0136799999998877533 3787 9999999866 9999999988 6 999
Q ss_pred hcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHHHhHhh
Q 011677 357 VGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVG 434 (479)
Q Consensus 357 ~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~ 434 (479)
++||+. +++++++++++.+++|++ |||++++||||++++++++|+++|++++++++.+||..+ +.+|||++
T Consensus 301 ~aDEs~-~t~~d~~~~i~~~a~d~v------~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa 373 (408)
T TIGR01502 301 VADEWC-NTVEDVKFFTDAKAGHMV------QIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMA 373 (408)
T ss_pred EecCCC-CCHHHHHHHHHhCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999974 569999999999999999 999999999999999999999999999998887788664 56799999
Q ss_pred cCCCCc--ccCCCCchhHHHHhHHHHHHHHHhC
Q 011677 435 LASGQI--KAGAPCRGERLAKYNQLLHIEEELG 465 (479)
Q Consensus 435 ~~~~~i--k~G~~~~~er~~kyn~ll~ie~~l~ 465 (479)
+++.++ |||.-...-=+..+|++.|+...++
T Consensus 374 ~~~~~~l~kpg~g~d~~~~~~~ne~~r~~~~~~ 406 (408)
T TIGR01502 374 TGARQVLAKPGMGVDEGMMIVKNEMNRVLALVG 406 (408)
T ss_pred cCCCceEecCCCCcchhHHHHHHHHHHHHHHhh
Confidence 998887 8997544334899999999876553
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=329.09 Aligned_cols=324 Identities=16% Similarity=0.167 Sum_probs=225.0
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccH----HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV----NRAVKNINERISEALVGMDPILQSQIDQAMI 137 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~----~~av~~i~~~l~p~LiG~d~~~~~~id~~l~ 137 (479)
..|.|+|+|++|++ ||||+.+..- +.+.+++. ..+...+++.++|.|+|+||.+.+++|+.|.
T Consensus 13 ~~vlV~I~tddG~~----------G~GEa~~~~~---~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~ 79 (369)
T cd03314 13 EAISVMLVLEDGQV----------AVGDCAAVQY---SGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLD 79 (369)
T ss_pred cEEEEEEEECCCCE----------EEEecccccc---cCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHH
Confidence 57899999999994 9999754200 00122222 3345578888999999999999999999997
Q ss_pred hhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCC
Q 011677 138 DLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGA 217 (479)
Q Consensus 138 ~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~ 217 (479)
+....+ +.....+++|||+||||+.||.+|+|||++|||..+..+.+.++|+|..+++. . .
T Consensus 80 ~~~~~g--~~~~~aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~----~-------------~ 140 (369)
T cd03314 80 KMRLDG--NRLHTAIRYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDD----R-------------Y 140 (369)
T ss_pred HHhhcC--CcchhhHHHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCc----c-------------c
Confidence 632111 11234578999999999999999999999999521001234566667543211 0 0
Q ss_pred CcHHHHHHHHHHH-----HHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccc
Q 011677 218 SSFGEALQMGSET-----YHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMH 291 (479)
Q Consensus 218 ~~~~ea~~~~~e~-----~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~ 291 (479)
...++.++.+.+. |+.+| .| |....++- . .....++.++... .+|.+ ..+ +|+|.. |
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~k----~k-G~~~~K~~------~---~~~~~~~~v~avr-~~G~~-~~l~vDaN~~-w 203 (369)
T cd03314 141 INVDKMILKGADVLPHALINNVE----EK-GPKGEKLL------E---YVKWLSDRIRKLG-RPGYH-PILHIDVYGT-I 203 (369)
T ss_pred ccHHHHHHHHHhhhhhhhhhhHh----hc-CccHHHHH------H---hHHHHHHHHHHHh-hcCCC-CEEEEEcCCc-c
Confidence 1222222222211 33333 33 43221111 0 1122233443333 44655 456 998421 1
Q ss_pred cccCceeeccCCCCCCCCCCCC--CHHHHHHHHHHHHhhC-C--ceeeecCCCccC----HHHHHHHHhh-----h-hhh
Q 011677 292 NIYSTKYDLDFKSPNKSGQNFK--SGEDMIEMYKELCADY-P--IVSIEDPFDKED----WEHTKSVLQI-----C-QQV 356 (479)
Q Consensus 292 ~~~~g~Y~~~~~~~~~~~~~~~--t~~e~i~~~~~ll~~~-~--i~~iEdP~~~~D----~~g~~~L~~~-----~-~~I 356 (479)
.|.| |.++++++... ++++ + +.||||||+++| +++|++|+++ + +||
T Consensus 204 ------------------~~~~~~~~~~A~~~~~~-Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPI 264 (369)
T cd03314 204 ------------------GQAFDPDPDRAADYLAT-LEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRI 264 (369)
T ss_pred ------------------ccccCCCHHHHHHHHHH-HHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceE
Confidence 1457 89999988765 5654 4 789999999865 8999999988 6 999
Q ss_pred hcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHHHhHhh
Q 011677 357 VGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVG 434 (479)
Q Consensus 357 ~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~ 434 (479)
++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|+++|+..+ +.+|++.+
T Consensus 265 a~dEs~~-t~~d~~~li~~~a~div------~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~aa~lHlaaa 337 (369)
T cd03314 265 VADEWCN-TLEDIRDFADAGAAHMV------QIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVHVALA 337 (369)
T ss_pred EecCCcC-CHHHHHHHHHhCCCCEE------EecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHHHHHh
Confidence 9999865 59999999999999999 999999999999999999999999999888777788765 66799999
Q ss_pred cCCCCc--ccCCCCchhHHHHhHHHHHH
Q 011677 435 LASGQI--KAGAPCRGERLAKYNQLLHI 460 (479)
Q Consensus 435 ~~~~~i--k~G~~~~~er~~kyn~ll~i 460 (479)
+++.|+ |+|.-...--+..-|++-|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (369)
T cd03314 338 TRADQMLAKPGMGVDEGLMIVTNEMNRT 365 (369)
T ss_pred cCCcceeeCCCCCccchHHHHHHHHHHH
Confidence 999887 78877666666677776654
|
This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=336.13 Aligned_cols=291 Identities=19% Similarity=0.204 Sum_probs=215.6
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCC
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMD 125 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d 125 (479)
+|++|+++.. .+.|+|+|++|+ +|+||+.. . ..++..+++.++|.|+|+|
T Consensus 1 kI~~i~~~~~-------~v~V~i~td~Gi----------~G~GE~~~----------~---~~~~~~i~~~l~p~liG~d 50 (341)
T cd03327 1 KIKSVRTRVG-------WLFVEIETDDGT----------VGYANTTG----------G---PVACWIVDQHLARFLIGKD 50 (341)
T ss_pred CeEEEEEEEE-------EEEEEEEECCCC----------eEEecCCC----------c---hHHHHHHHHHHHHHhCCCC
Confidence 5889988542 588999999999 49999631 1 1234457788999999999
Q ss_pred CCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcc
Q 011677 126 PILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNL 205 (479)
Q Consensus 126 ~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l 205 (479)
|.+++++|+.|.+.......+++...|++|||+||||+.||.+|+|||+|||| ..+.++| +|...+ + ..
T Consensus 51 p~~~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLGG---~~r~~i~--~y~~~~-~--~~--- 119 (341)
T cd03327 51 PSDIEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLGG---RTRDKIP--AYASGL-Y--PT--- 119 (341)
T ss_pred chHHHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcCC---CcCCceE--EEEECC-C--CC---
Confidence 99999999999764322223445567999999999999999999999999998 3344555 454321 1 10
Q ss_pred cccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-e
Q 011677 206 AIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-S 284 (479)
Q Consensus 206 ~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-i 284 (479)
+. ....+++.+...++|+++| .|.|.. . ..+ ..+.+.+.+.++.||+++ |.+ .++ +
T Consensus 120 ~~---------~~~~~~a~~~~~~Gf~~~K----ikvg~~---~-~~~--~~~~~~d~~~v~avr~~~---g~~-~~l~v 176 (341)
T cd03327 120 DL---------DELPDEAKEYLKEGYRGMK----MRFGYG---P-SDG--HAGLRKNVELVRAIREAV---GYD-VDLML 176 (341)
T ss_pred CH---------HHHHHHHHHHHHcCCCEEE----ECCCCC---C-Ccc--hHHHHHHHHHHHHHHHHh---CCC-CcEEE
Confidence 11 1234556556666777766 343310 0 000 011233455566666555 654 456 9
Q ss_pred ecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccc
Q 011677 285 DCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLM 363 (479)
Q Consensus 285 D~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~ 363 (479)
|+| +.||.++++++. +.+++|++.|||||++++|+++|++|++++ +||++||+..
T Consensus 177 Dan-----------------------~~~~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pIa~gE~~~ 232 (341)
T cd03327 177 DCY-----------------------MSWNLNYAIKMA-RALEKYELRWIEEPLIPDDIEGYAELKKATGIPISTGEHEY 232 (341)
T ss_pred ECC-----------------------CCCCHHHHHHHH-HHhhhcCCccccCCCCccCHHHHHHHHhcCCCCeEeccCcc
Confidence 984 357889999875 457999999999999999999999999999 9999999865
Q ss_pred cCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcC
Q 011677 364 SNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLA 436 (479)
Q Consensus 364 t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~ 436 (479)
++++++++++.+++|++ |+|++++||||++++++++|+++|+++ ++|.+ ..+.+|++.++.
T Consensus 233 -~~~~~~~~i~~~a~d~i------~~d~~~~GGit~~~~i~~~A~~~g~~~-~~h~~----~~a~~hlaaa~~ 293 (341)
T cd03327 233 -TVYGFKRLLEGRAVDIL------QPDVNWVGGITELKKIAALAEAYGVPV-VPHAS----QIYNYHFIMSEP 293 (341)
T ss_pred -CHHHHHHHHHcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCee-ccccH----HHHHHHHHHhCc
Confidence 49999999999999999 999999999999999999999999996 56753 346678877764
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=339.52 Aligned_cols=308 Identities=15% Similarity=0.165 Sum_probs=220.3
Q ss_pred ceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC
Q 011677 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM 124 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~ 124 (479)
|+|++|+...+ ..+++.+.|+|+|++|+ +||||+.. .+.+ ..+...+.+.++|.|+|+
T Consensus 1 mkI~~v~~~~~--~~~~~~vlVri~td~G~----------~G~GE~~~---------~~~~-~~~~~~~~~~l~p~l~G~ 58 (404)
T PRK15072 1 MKIVDAEVIVT--CPGRNFVTLKITTDDGV----------TGLGDATL---------NGRE-LAVASYLQDHVCPLLIGR 58 (404)
T ss_pred CeeEEEEEEEE--CCCCcEEEEEEEeCCCC----------eEEEeccc---------CCch-HHHHHHHHHHHHHHcCCC
Confidence 68999999876 23456899999999999 49999742 1222 234456778899999999
Q ss_pred CCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCc
Q 011677 125 DPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNN 204 (479)
Q Consensus 125 d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~ 204 (479)
||.+.+++|+.|.+.. ....+.+...|++|||+||||+.||.+|+|||+|||| ..+.+ +|+|++..+.
T Consensus 59 d~~~~e~~~~~l~~~~-~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG---~~r~~--v~~y~~~~~~------ 126 (404)
T PRK15072 59 DAHRIEDIWQYLYRGA-YWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGG---ASREG--VMVYGHANGR------ 126 (404)
T ss_pred ChhHHHHHHHHHHHhc-ccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCC---CccCc--eEEEEeCCCC------
Confidence 9999999999997521 1122334467999999999999999999999999998 32344 5556542221
Q ss_pred ccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCc---c-cCCCCC--CCCCC----------------Cch
Q 011677 205 LAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGC---N-VGEDGG--LAPNI----------------SSI 262 (479)
Q Consensus 205 l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~---~-vg~~G~--~~~~~----------------~~~ 262 (479)
+.+ ...+++.+...++|+++| .|.|.... . ...+.+ +.+.. +.+
T Consensus 127 -~~~---------~~~~~a~~~~~~Gf~~~K----iKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 192 (404)
T PRK15072 127 -DID---------ELLDDVARHLELGYKAIR----VQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFV 192 (404)
T ss_pred -CHH---------HHHHHHHHHHHcCCCEEE----EecCCCCcccccccccccccccccccccccccccccccHHHHHHH
Confidence 111 123455555566777776 45442100 0 000000 01110 111
Q ss_pred HHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCcc
Q 011677 263 REGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKE 341 (479)
Q Consensus 263 ~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~ 341 (479)
.+.+++||+++ |.+ .++ +|+| +.||.++++++.+ .+++|++.|||||++++
T Consensus 193 ~~~v~avre~~---G~~-~~l~vDaN-----------------------~~w~~~~A~~~~~-~l~~~~l~~iEeP~~~~ 244 (404)
T PRK15072 193 PKLFEAVRNKF---GFD-LHLLHDVH-----------------------HRLTPIEAARLGK-SLEPYRLFWLEDPTPAE 244 (404)
T ss_pred HHHHHHHHhhh---CCC-ceEEEECC-----------------------CCCCHHHHHHHHH-hccccCCcEEECCCCcc
Confidence 34555565555 644 456 9984 3678999998765 47999999999999999
Q ss_pred CHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCC
Q 011677 342 DWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRS 420 (479)
Q Consensus 342 D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ 420 (479)
|++++++|++++ +||++||+.. ++++++++++.+++|++ |+|++++||||++++++++|+++|+++++++++
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~-~~~~~~~li~~~a~dii------~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFN-SIWDCKQLIEEQLIDYI------RTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCcc-CHHHHHHHHHcCCCCEE------ecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 999999999999 9999999865 59999999999999999 999999999999999999999999998653333
Q ss_pred CCCch--hHHHHhHhhc
Q 011677 421 GETED--SFIADLSVGL 435 (479)
Q Consensus 421 get~d--~~~~dlAv~~ 435 (479)
.++.. ++.+|||.++
T Consensus 318 ~~s~l~~aa~~hlaaa~ 334 (404)
T PRK15072 318 DLSPVCMAAALHFDLWV 334 (404)
T ss_pred ccchHHHHHHHHHHHhc
Confidence 34544 3456666654
|
|
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=325.86 Aligned_cols=294 Identities=20% Similarity=0.199 Sum_probs=221.1
Q ss_pred ceeeEEEEEEEecC--------C----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQILDS--------R----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~ds--------~----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+++.+.-. . ....|.|+|+|++|+ +|+||+. .|.+++...+...
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~----------~G~Ge~~--------~~~~~~~~~~~~~ 62 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGV----------TGHSYLF--------TYTPAALKSLKQL 62 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCC----------eEEEeee--------cCCCCcHHHHHHH
Confidence 58999998887411 1 235689999999999 4999853 2455555555444
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+ +.++|.|+|+++ +.+++++.+.+.......+++...|++|||+||||+.||.+|+|||++||| . +. ++|+|
T Consensus 63 ~-~~l~p~LiG~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg---~-~~--~v~~y 134 (355)
T cd03321 63 L-DDMAALLVGEPL-APAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGG---N-PR--PVQAY 134 (355)
T ss_pred H-HHHHHHhCCCCC-ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CC--CeeEE
Confidence 4 469999999986 678888877653211112334467999999999999999999999999998 3 23 45556
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEA 272 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~a 272 (479)
.+++.+ + .+...+++.+...++|+.+|. |.|. ++.+.+.+.++.+|++
T Consensus 135 ~s~~~~-------~---------~~~~~~~a~~~~~~Gf~~~Ki----Kvg~------------~~~~~d~~~v~air~~ 182 (355)
T cd03321 135 DSHGLD-------G---------AKLATERAVTAAEEGFHAVKT----KIGY------------PTADEDLAVVRSIRQA 182 (355)
T ss_pred EeCCCC-------h---------HHHHHHHHHHHHHhhhHHHhh----hcCC------------CChHhHHHHHHHHHHh
Confidence 543211 1 123456777777788988883 5331 1223445666666665
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+ |.+ ..+ +|+| +.||.++++++.++ +++|++.|||||++++|+++|++|++
T Consensus 183 ~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~~~-l~~~~i~~iEeP~~~~d~~~~~~l~~ 234 (355)
T cd03321 183 V---GDG-VGLMVDYN-----------------------QSLTVPEAIERGQA-LDQEGLTWIEEPTLQHDYEGHARIAS 234 (355)
T ss_pred h---CCC-CEEEEeCC-----------------------CCcCHHHHHHHHHH-HHcCCCCEEECCCCCcCHHHHHHHHH
Confidence 5 644 456 8883 36788999988655 68999999999999999999999999
Q ss_pred hh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHH
Q 011677 352 IC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIAD 430 (479)
Q Consensus 352 ~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~d 430 (479)
++ +||++||.+. ++++++++++.+++|++ |+|++++||+|++++++++|+++|+++ ++|..+ +..+|
T Consensus 235 ~~~ipia~~E~~~-~~~~~~~~i~~~~~d~i------~~~~~~~GGit~~~~ia~~A~~~gi~~-~~h~~~----~~~~h 302 (355)
T cd03321 235 ALRTPVQMGENWL-GPEEMFKALSAGACDLV------MPDLMKIGGVTGWLRASALAEQAGIPM-SSHLFQ----EISAH 302 (355)
T ss_pred hcCCCEEEcCCCc-CHHHHHHHHHhCCCCeE------ecCHhhhCCHHHHHHHHHHHHHcCCee-cccchH----HHHHH
Confidence 99 9999999764 59999999999999999 999999999999999999999999996 567643 34678
Q ss_pred hHhhcC
Q 011677 431 LSVGLA 436 (479)
Q Consensus 431 lAv~~~ 436 (479)
++.++.
T Consensus 303 ~~aa~~ 308 (355)
T cd03321 303 LLAVTP 308 (355)
T ss_pred HHHhCC
Confidence 887754
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=329.84 Aligned_cols=290 Identities=16% Similarity=0.180 Sum_probs=212.2
Q ss_pred eeeEEEEEEEecCC------------CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHH
Q 011677 46 VITKIKARQILDSR------------GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNI 113 (479)
Q Consensus 46 ~I~~I~~~~i~ds~------------g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i 113 (479)
+|++|+++.+.-.. ....|.|+|+| +|+ +|+||+. .+ ......+
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~----------~G~Ge~~----------~~---~~~~~~i 56 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGR----------TGLGYTY----------AD---AAAAALV 56 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCc----------EEEeCCC----------Ch---HHHHHHH
Confidence 47777776653111 23457899997 698 4999742 22 2334457
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEE
Q 011677 114 NERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFT 193 (479)
Q Consensus 114 ~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~ 193 (479)
++.++|.|+|+||.+.++||+.|.+.......++....|++|||+||||+.||.+|+|||+|||| . +.++|+ |.
T Consensus 57 ~~~~~p~liG~d~~~~~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg---~-~~~v~~--y~ 130 (352)
T cd03328 57 DGLLAPVVEGRDALDPPAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGR---A-HDSVPV--YG 130 (352)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcC---C-CCCeEE--EE
Confidence 77899999999999999999999763211122344457999999999999999999999999997 2 345554 54
Q ss_pred eecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHH
Q 011677 194 VISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAI 273 (479)
Q Consensus 194 ~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai 273 (479)
. ++... .+ .+...+++.+...++|+++| .|.| . +.+.+.+.++.+|+++
T Consensus 131 s--~~~~~---~~---------~e~~~~~a~~~~~~Gf~~~K----ikvg-------~------~~~~d~~~v~~vRe~~ 179 (352)
T cd03328 131 S--GGFTS---YD---------DDRLREQLSGWVAQGIPRVK----MKIG-------R------DPRRDPDRVAAARRAI 179 (352)
T ss_pred e--cCCCC---CC---------HHHHHHHHHHHHHCCCCEEE----eecC-------C------CHHHHHHHHHHHHHHc
Confidence 3 22110 01 11234555555556676666 3422 1 1123455566665555
Q ss_pred HhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhh
Q 011677 274 NRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQI 352 (479)
Q Consensus 274 ~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~ 352 (479)
|.+ .++ +|+| +.||.++++++.+ .+++|++.|||||++++|++++++|+++
T Consensus 180 ---G~~-~~l~vDaN-----------------------~~~~~~~A~~~~~-~l~~~~~~~~EeP~~~~d~~~~~~l~~~ 231 (352)
T cd03328 180 ---GPD-AELFVDAN-----------------------GAYSRKQALALAR-AFADEGVTWFEEPVSSDDLAGLRLVRER 231 (352)
T ss_pred ---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HHHHhCcchhhCCCChhhHHHHHHHHhh
Confidence 644 456 9983 3678999998764 5799999999999999999999999999
Q ss_pred --h-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q 011677 353 --C-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIA 429 (479)
Q Consensus 353 --~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~ 429 (479)
+ +||++||+.. ++++++++++.+++|++ |+|++++||||++++++++|+++|++++ +|.. .+..+
T Consensus 232 ~~~~iPIa~gE~~~-~~~~~~~li~~~a~div------~~d~~~~GGit~~~~ia~~A~a~gi~~~-~h~~----~~a~~ 299 (352)
T cd03328 232 GPAGMDIAAGEYAY-TLAYFRRLLEAHAVDVL------QADVTRCGGVTGFLQAAALAAAHHVDLS-AHCA----PALHA 299 (352)
T ss_pred CCCCCCEEeccccc-CHHHHHHHHHcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCeec-cCch----HHHHH
Confidence 8 9999999765 59999999999999999 9999999999999999999999999975 4642 35667
Q ss_pred HhHhhcC
Q 011677 430 DLSVGLA 436 (479)
Q Consensus 430 dlAv~~~ 436 (479)
|++.++.
T Consensus 300 hl~aa~~ 306 (352)
T cd03328 300 HVACAVP 306 (352)
T ss_pred HHHHhCC
Confidence 8887764
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=327.23 Aligned_cols=286 Identities=18% Similarity=0.188 Sum_probs=212.0
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCC
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMD 125 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d 125 (479)
+|++|+.... +.+++.+.|+|+|++|+ +|+||+.. .+. .......+++.++|.|+|+|
T Consensus 1 kI~~ie~~~~--~~~~~~vlV~v~td~G~----------~G~GE~~~---------~~~-~~~~~~~i~~~l~p~l~G~d 58 (361)
T cd03322 1 KITAIEVIVT--CPGRNFVTLKITTDQGV----------TGLGDATL---------NGR-ELAVKAYLREHLKPLLIGRD 58 (361)
T ss_pred CeEEEEEEEE--CCCCCEEEEEEEeCCCC----------eEEEeccc---------CCC-HHHHHHHHHHHHHHHcCCCC
Confidence 5899999544 33456799999999998 49999742 111 22344567788999999999
Q ss_pred CCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcc
Q 011677 126 PILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNL 205 (479)
Q Consensus 126 ~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l 205 (479)
|.+++.+|+.|.... ....+.....|++|||+||||+.||.+|+|||+|||| ..+.++|+ |++..+.
T Consensus 59 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg---~~r~~v~~--ya~~~~~------- 125 (361)
T cd03322 59 ANRIEDIWQYLYRGA-YWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGG---KSRDGIMV--YSHASGR------- 125 (361)
T ss_pred hhHHHHHHHHHHHhc-ccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCC---CccCeeeE--EEeCCCC-------
Confidence 999999999986521 1111223456999999999999999999999999998 33445444 5432110
Q ss_pred cccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-e
Q 011677 206 AIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-S 284 (479)
Q Consensus 206 ~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-i 284 (479)
+. ....+++.+...++|+.+|. | ..+.++.+|+++ |.+ ..+ +
T Consensus 126 ~~---------~~~~~~a~~~~~~Gf~~~Ki----K--------------------v~~~v~avre~~---G~~-~~l~v 168 (361)
T cd03322 126 DI---------PELLEAVERHLAQGYRAIRV----Q--------------------LPKLFEAVREKF---GFE-FHLLH 168 (361)
T ss_pred CH---------HHHHHHHHHHHHcCCCeEee----C--------------------HHHHHHHHHhcc---CCC-ceEEE
Confidence 11 11234444444455555552 2 134566666555 644 456 9
Q ss_pred ecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccc
Q 011677 285 DCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLM 363 (479)
Q Consensus 285 D~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~ 363 (479)
|+| +.||.++++++.+ .+++|++.|||||++++|++++++|++++ +||++||+.
T Consensus 169 DaN-----------------------~~w~~~~A~~~~~-~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~~- 223 (361)
T cd03322 169 DVH-----------------------HRLTPNQAARFGK-DVEPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEVF- 223 (361)
T ss_pred ECC-----------------------CCCCHHHHHHHHH-HhhhcCCCEEECCCCcccHHHHHHHHhcCCCCEEeccCC-
Confidence 983 3678999998765 47999999999999999999999999999 999999976
Q ss_pred cCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCC-CCchh--HHHHhHhhc
Q 011677 364 SNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG-ETEDS--FIADLSVGL 435 (479)
Q Consensus 364 t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~g-et~d~--~~~dlAv~~ 435 (479)
.+++++++++..+++|++ |+|++++||||++++++++|+++|+++++ |... ++..+ ..+||+.++
T Consensus 224 ~~~~~~~~~i~~~a~di~------~~d~~~~GGit~~~~ia~~A~~~gi~~~~-h~~~~~s~i~~aa~~~laa~~ 291 (361)
T cd03322 224 NSIWDWQNLIQERLIDYI------RTTVSHAGGITPARKIADLASLYGVRTGW-HGPTDLSPVGMAAALHLDLWV 291 (361)
T ss_pred cCHHHHHHHHHhCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCeeec-cCCCCcchHHHHHHHHHHhhc
Confidence 459999999999999999 99999999999999999999999999865 5443 45443 455665554
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=327.38 Aligned_cols=302 Identities=15% Similarity=0.106 Sum_probs=212.9
Q ss_pred ceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC
Q 011677 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM 124 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~ 124 (479)
|+|++|+++.+ .. .++.|+|+|++|++ |+||+.. .+ ........+ +.++|.|+|+
T Consensus 1 mkI~~i~~~~~-~~---~~vlV~v~t~dG~~----------G~GE~~~---------~~-~~~~~~~~~-~~~~p~l~G~ 55 (382)
T PRK14017 1 MKITKLETFRV-PP---RWLFLKIETDEGIV----------GWGEPVV---------EG-RARTVEAAV-HELADYLIGK 55 (382)
T ss_pred CeEEEEEEEEE-CC---CEEEEEEEECCCCe----------EEecccc---------CC-chHHHHHHH-HHHHHHhCCC
Confidence 68999999887 21 35889999999984 9999643 11 122233334 4699999999
Q ss_pred CCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCc
Q 011677 125 DPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNN 204 (479)
Q Consensus 125 d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~ 204 (479)
||.+.+++++.|..... ...+.....|++|||+||||+.||.+|+|||++||| ..+.++ |+|..++++
T Consensus 56 d~~~~~~~~~~l~~~~~-~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg---~~r~~i--~~~~~~~~~------ 123 (382)
T PRK14017 56 DPRRIEDHWQVMYRGGF-YRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGG---LVRDRI--RVYSWIGGD------ 123 (382)
T ss_pred CHHHHHHHHHHHHHhcc-cCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCC---Ccccee--eEeEeCCCC------
Confidence 99999999999864210 111122356999999999999999999999999998 323444 445443211
Q ss_pred ccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-
Q 011677 205 LAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW- 283 (479)
Q Consensus 205 l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i- 283 (479)
+. +...+++.+...++|+.+| .|.|.. .+..++ ..+.+.+.+.++++|+++ |.+ .++
T Consensus 124 -~~---------~~~~~~a~~~~~~Gf~~~K----iKv~~~---~~~~~~-~~~~~~d~~~i~avr~~~---g~~-~~l~ 181 (382)
T PRK14017 124 -RP---------ADVAEAARARVERGFTAVK----MNGTEE---LQYIDS-PRKVDAAVARVAAVREAV---GPE-IGIG 181 (382)
T ss_pred -CH---------HHHHHHHHHHHHcCCCEEE----EcCcCC---cccccc-HHHHHHHHHHHHHHHHHh---CCC-CeEE
Confidence 11 1233455555555666665 342210 000000 001123455555555555 644 456
Q ss_pred eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCcc
Q 011677 284 SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLL 362 (479)
Q Consensus 284 iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~ 362 (479)
+|+| +.||.++++++.+ .++++++.|||||++++|++++++|++++ +||++||+.
T Consensus 182 vDaN-----------------------~~w~~~~A~~~~~-~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~ 237 (382)
T PRK14017 182 VDFH-----------------------GRVHKPMAKVLAK-ELEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGERL 237 (382)
T ss_pred EECC-----------------------CCCCHHHHHHHHH-hhcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCcc
Confidence 9983 3678899998764 57899999999999999999999999999 999999986
Q ss_pred ccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcC
Q 011677 363 MSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLA 436 (479)
Q Consensus 363 ~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~ 436 (479)
. ++++++++++.+++|++ |+|++++||||++++++++|+++|++++++++.+....++.+||+.++.
T Consensus 238 ~-~~~~~~~li~~~a~d~v------~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~i~~aa~~hl~aa~~ 304 (382)
T PRK14017 238 F-SRWDFKRVLEAGGVDII------QPDLSHAGGITECRKIAAMAEAYDVALAPHCPLGPIALAACLQVDAVSP 304 (382)
T ss_pred C-CHHHHHHHHHcCCCCeE------ecCccccCCHHHHHHHHHHHHHcCCeEeecCCCCHHHHHHHHHHHHhCc
Confidence 4 59999999999999999 9999999999999999999999999976644432123345666766653
|
|
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=323.13 Aligned_cols=296 Identities=16% Similarity=0.136 Sum_probs=211.7
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCC
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMD 125 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d 125 (479)
+|++|+.+.+ + .+.+.|+|+|++|++ ||||+... +. .......+++ ++|.|+|+|
T Consensus 1 ~I~~i~~~~~-~---~~~~~V~i~~~~G~~----------G~GE~~~~---------~~-~~~~~~~~~~-l~p~l~G~d 55 (352)
T cd03325 1 KITKIETFVV-P---PRWLFVKIETDEGVV----------GWGEPTVE---------GK-ARTVEAAVQE-LEDYLIGKD 55 (352)
T ss_pred CeEEEEEEEE-C---CCEEEEEEEECCCCE----------EEeccccC---------Cc-chHHHHHHHH-HHHHhCCCC
Confidence 4888988776 2 357899999999994 99997531 11 1233334555 999999999
Q ss_pred CCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcc
Q 011677 126 PILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNL 205 (479)
Q Consensus 126 ~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l 205 (479)
|.+++++++.|.... ....+....+|++|||+||||+.||..|+|||++||| ..+.++|+ |..++++
T Consensus 56 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg---~~~~~i~~--~~~~~~~------- 122 (352)
T cd03325 56 PMNIEHHWQVMYRGG-FYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGG---QVRDRVRV--YSWIGGD------- 122 (352)
T ss_pred HHHHHHHHHHHHHhc-CcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCC---CccceeEE--EEeCCCC-------
Confidence 999999999986421 1111222356999999999999999999999999998 32345444 5433211
Q ss_pred cccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCC---CCCchHHHHHHHHHHHHhcCCCCCc
Q 011677 206 AIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAP---NISSIREGLDLVKEAINRTGIPSSK 282 (479)
Q Consensus 206 ~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~---~~~~~~~~l~~v~~ai~~~g~~~~~ 282 (479)
+. ....+++.+...++|+.+| .|.|. ..++.+ +.+.+.+.++.+|+++ |.+ .+
T Consensus 123 ~~---------~~~~~~~~~~~~~Gf~~~K----iKvg~-------~~~~~~~~~~~~~D~~~i~avr~~~---g~~-~~ 178 (352)
T cd03325 123 RP---------SDVAEAARARREAGFTAVK----MNATE-------ELQWIDTSKKVDAAVERVAALREAV---GPD-ID 178 (352)
T ss_pred CH---------HHHHHHHHHHHHcCCCEEE----ecCCC-------CcccCCCHHHHHHHHHHHHHHHHhh---CCC-CE
Confidence 11 1123344444445566655 45431 111111 1223344455555444 644 45
Q ss_pred e-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCC
Q 011677 283 W-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDD 360 (479)
Q Consensus 283 i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde 360 (479)
+ +|+| +.||.++++++.+ .+++|++.|||||++++|++++++|++++ +||++||
T Consensus 179 l~vDaN-----------------------~~~~~~~A~~~~~-~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pia~dE 234 (352)
T cd03325 179 IGVDFH-----------------------GRVSKPMAKDLAK-ELEPYRLLFIEEPVLPENVEALAEIAARTTIPIATGE 234 (352)
T ss_pred EEEECC-----------------------CCCCHHHHHHHHH-hccccCCcEEECCCCccCHHHHHHHHHhCCCCEEecc
Confidence 6 9984 3578899998764 57999999999999999999999999999 9999999
Q ss_pred ccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 361 LLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 361 ~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
+.. ++++++++++.+++|++ |+|++++||+|++++++++|+++|++++ +|.. ++.. .+.+||+.++.
T Consensus 235 s~~-~~~~~~~~~~~~~~d~v------~~d~~~~GGit~~~~~~~lA~~~gi~~~-~h~~-~s~i~~~a~~hlaa~~~ 303 (352)
T cd03325 235 RLF-SRWDFKELLEDGAVDII------QPDISHAGGITELKKIAAMAEAYDVALA-PHCP-LGPIALAASLHVDASTP 303 (352)
T ss_pred ccc-CHHHHHHHHHhCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCcEe-ccCC-CChHHHHHHHHHHHhcc
Confidence 764 59999999999999999 9999999999999999999999999986 5654 5544 46666666653
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=323.24 Aligned_cols=284 Identities=19% Similarity=0.162 Sum_probs=212.5
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
...+.|+|+|++|+ +|+||+.++.. +.|.+++....+..+++.++|.|+|+|+.+.+++++.|....
T Consensus 28 ~~~~~V~v~t~~G~----------~G~GE~~~~~~---~~~~~~~~~~~~~~l~~~~~~~l~G~~~~~~~~~~~~l~~~~ 94 (365)
T cd03318 28 QSLVLVRLTTSDGV----------VGIGEATTPGG---PAWGGESPETIKAIIDRYLAPLLIGRDATNIGAAMALLDRAV 94 (365)
T ss_pred cceEEEEEEECCCC----------eEEEecCCCCC---CccCCCCHHHHHHHHHHhhHHHHcCCChHHHHHHHHHHHHHh
Confidence 45688999999998 49999876421 235566666667778888999999999999999998887531
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
. + ...|++|||+||||+.||..|+|+|++||| ..+.++|+ |..++.+. . ....
T Consensus 95 -~---~--~~~a~said~AlwDl~gK~~g~Pl~~LLGg---~~~~~v~~--~~~~~~~~-------~---------~~~~ 147 (365)
T cd03318 95 -A---G--NLFAKAAIEMALLDAQGRRLGLPVSELLGG---RVRDSLPV--AWTLASGD-------T---------ERDI 147 (365)
T ss_pred -c---C--CccHHHHHHHHHHHHHHhHcCCCHHHHcCC---CcCCceEE--EEEEeCCC-------H---------HHHH
Confidence 1 1 134899999999999999999999999998 33345544 54332210 0 1123
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCcee
Q 011677 221 GEALQMGSET-YHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKY 298 (479)
Q Consensus 221 ~ea~~~~~e~-~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y 298 (479)
+++.+...++ |+++| .|.| . .+.+++.+.++.+|+++ |.+ .++ +|+|
T Consensus 148 ~~~~~~~~~G~f~~~K----iKvg-------~-----~~~~~d~~~v~avr~~~---g~~-~~l~iDaN----------- 196 (365)
T cd03318 148 AEAEEMLEAGRHRRFK----LKMG-------A-----RPPADDLAHVEAIAKAL---GDR-ASVRVDVN----------- 196 (365)
T ss_pred HHHHHHHhCCCceEEE----EEeC-------C-----CChHHHHHHHHHHHHHc---CCC-cEEEEECC-----------
Confidence 4444444555 65555 3433 1 11223445555555544 644 456 9984
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCC
Q 011677 299 DLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPL 377 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a 377 (479)
+.||.++++++. +.+++|++.|||||++++|++++++|++++ +||++||+. .++++++++++.++
T Consensus 197 ------------~~~~~~~A~~~~-~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dE~~-~~~~~~~~~i~~~~ 262 (365)
T cd03318 197 ------------QAWDESTAIRAL-PRLEAAGVELIEQPVPRENLDGLARLRSRNRVPIMADESV-SGPADAFELARRGA 262 (365)
T ss_pred ------------CCCCHHHHHHHH-HHHHhcCcceeeCCCCcccHHHHHHHHhhcCCCEEcCccc-CCHHHHHHHHHhCC
Confidence 357889999876 457999999999999999999999999999 999999975 45999999999999
Q ss_pred CceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 378 AMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 378 ~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
+|++ |+|++++||||++++++++|+++|++++++|+. |+.. ++.+|+|.++.
T Consensus 263 ~d~~------~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~-~s~i~~aa~~hlaaa~~ 316 (365)
T cd03318 263 ADVF------SLKIAKSGGLRRAQKVAAIAEAAGIALYGGTML-ESSIGTAASAHLFATLP 316 (365)
T ss_pred CCeE------EEeecccCCHHHHHHHHHHHHHcCCceeecCcc-hhHHHHHHHHHHHHhCC
Confidence 9999 999999999999999999999999998876554 6544 45567766653
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=321.18 Aligned_cols=284 Identities=18% Similarity=0.139 Sum_probs=209.8
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
.+.+.|+|+|++|+ +|+||+.++.. +.|.+++...+...+++.++|.|+|+|+.+.+++++.|....
T Consensus 27 ~~~~~V~v~t~~G~----------~G~Ge~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 93 (368)
T TIGR02534 27 QTLVLVRIRTEDGV----------IGYGEGTTIGG---LWWGGESPETIKANIDTYLAPVLVGRDATEIAAIMADLEKVV 93 (368)
T ss_pred ccEEEEEEEECCCC----------eEEEecCCCCC---CccCCCCHHHHHHHHHHhhHHHHcCCChhhHHHHHHHHHHHh
Confidence 46789999999998 49999865321 346677777667778888999999999999998888876532
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
.. ...|++|||+||||+.||..|+|+|++||| ..+.++|+ |.+++.+ +.. ..+
T Consensus 94 -~~-----~~~a~said~AlwDl~gK~~g~Pv~~LLGg---~~r~~v~~--~~~~~~~-------~~~---------~~~ 146 (368)
T TIGR02534 94 -AG-----NRFAKAAVDTALHDAQARRLGVPVSELLGG---RVRDSVDV--TWTLASG-------DTD---------RDI 146 (368)
T ss_pred -cC-----CchHHHHHHHHHHHHHHHHcCCcHHHHhCC---CCCCceEE--EEEEeCC-------CHH---------HHH
Confidence 11 124899999999999999999999999998 33345554 4333221 000 112
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCcee
Q 011677 221 GEALQMG-SETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKY 298 (479)
Q Consensus 221 ~ea~~~~-~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y 298 (479)
+++.+.. .++|+++| .|.| . .+.+++.+.++.+|+++ |.+ .++ +|+|
T Consensus 147 ~~~~~~~~~~Gf~~~K----iKvg-------~-----~~~~~d~~~v~~~re~~---g~~-~~l~~DaN----------- 195 (368)
T TIGR02534 147 AEAEERIEEKRHRSFK----LKIG-------A-----RDPADDVAHVVAIAKAL---GDR-ASVRVDVN----------- 195 (368)
T ss_pred HHHHHHHHhcCcceEE----EEeC-------C-----CCcHHHHHHHHHHHHhc---CCC-cEEEEECC-----------
Confidence 2333222 23555554 4433 1 11233455565555555 644 456 9983
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCC
Q 011677 299 DLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPL 377 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a 377 (479)
+.||.++++++.+ .+++|++.|||||++++|++++++|++++ +||++||+. .+++++++++..++
T Consensus 196 ------------~~~~~~~A~~~~~-~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~~-~~~~~~~~~~~~~~ 261 (368)
T TIGR02534 196 ------------AAWDERTALHYLP-QLADAGVELIEQPTPAENREALARLTRRFNVPIMADESV-TGPADALAIAKASA 261 (368)
T ss_pred ------------CCCCHHHHHHHHH-HHHhcChhheECCCCcccHHHHHHHHHhCCCCEEeCccc-CCHHHHHHHHHhCC
Confidence 3678899998764 57999999999999999999999999999 999999975 56999999999999
Q ss_pred CceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 378 AMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 378 ~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
+|++ |+|++++||||++++++++|+++|++++++++. ++.. ++.+|++.++.
T Consensus 262 ~d~~------~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~-~s~i~~aa~~h~~a~~~ 315 (368)
T TIGR02534 262 ADVF------ALKTTKSGGLLESKKIAAIAEAAGIALYGGTML-EGPIGTIASAHFFATFP 315 (368)
T ss_pred CCEE------EEcccccCCHHHHHHHHHHHHHcCCceeeecch-hhHHHHHHHHHHHHhCC
Confidence 9999 999999999999999999999999998766443 5545 44566666543
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=321.03 Aligned_cols=287 Identities=15% Similarity=0.163 Sum_probs=216.1
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
...+.|+|+|++|+ +|+||+.+.+- +.|.+++...+...+++.+.|.|+|+++.+++++++.|..+.
T Consensus 24 ~~~~~Vrv~t~~G~----------~G~GE~~~~~~---~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~~~~~~~~~~~ 90 (354)
T cd03317 24 REFLIVELTDEEGI----------TGYGEVVAFEG---PFYTEETNATAWHILKDYLLPLLLGREFSHPEEVSERLAPIK 90 (354)
T ss_pred eeEEEEEEEECCCC----------eEEEecCCCCC---CcccCCCHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Confidence 35688999999999 49999875421 346677777778888888999999999999999999887632
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
+ ...|++|||+||||+.||.+|+|+|++||| . +.++|+ |.+++.+ +. .+...
T Consensus 91 ~-------~~~a~aaid~AlwDl~gk~~g~Pv~~LLGg---~-~~~v~~--~~s~~~~-------~~--------~~~~~ 142 (354)
T cd03317 91 G-------NNMAKAGLEMAVWDLYAKAQGQSLAQYLGG---T-RDSIPV--GVSIGIQ-------DD--------VEQLL 142 (354)
T ss_pred C-------ChHHHHHHHHHHHHHHHHHcCCCHHHHhCC---C-CCeEEe--eEEEeCC-------Cc--------HHHHH
Confidence 1 135999999999999999999999999998 2 344444 5443211 00 01234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.+...++|+.+| .|.| + +.+.+.++.||+++ | + .++ +|+|
T Consensus 143 ~~~~~~~~~Gf~~~K----iKv~-------------~--~~d~~~l~~vr~~~---g-~-~~l~lDaN------------ 186 (354)
T cd03317 143 KQIERYLEEGYKRIK----LKIK-------------P--GWDVEPLKAVRERF---P-D-IPLMADAN------------ 186 (354)
T ss_pred HHHHHHHHcCCcEEE----EecC-------------h--HHHHHHHHHHHHHC---C-C-CeEEEECC------------
Confidence 455454455565555 3421 1 23466676666665 5 3 456 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.+++. ++ +.+++|++.|||||++++|++++++|++++ +||++||+. .++++++++++.+++
T Consensus 187 -----------~~~~~~~a~-~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~~pia~dEs~-~~~~~~~~~~~~~~~ 252 (354)
T cd03317 187 -----------SAYTLADIP-LL-KRLDEYGLLMIEQPLAADDLIDHAELQKLLKTPICLDESI-QSAEDARKAIELGAC 252 (354)
T ss_pred -----------CCCCHHHHH-HH-HHhhcCCccEEECCCChhHHHHHHHHHhhcCCCEEeCCcc-CCHHHHHHHHHcCCC
Confidence 356777764 54 558999999999999999999999999999 999999975 459999999999999
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
|++ ++|++++||||++++++++|+++|+++++|++ .|+..+..+.++++.......++.+
T Consensus 253 d~~------~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~-~es~l~~~a~~hla~~~~~~~~~~~ 312 (354)
T cd03317 253 KII------NIKPGRVGGLTEALKIHDLCQEHGIPVWCGGM-LESGIGRAHNVALASLPNFTYPGDI 312 (354)
T ss_pred CEE------EecccccCCHHHHHHHHHHHHHcCCcEEecCc-ccchHHHHHHHHHHhCCCCCCcccc
Confidence 999 99999999999999999999999999988765 5877766666555543444334443
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=314.10 Aligned_cols=285 Identities=14% Similarity=0.121 Sum_probs=211.9
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
...+.|+|+|++|+ +|+||+.+++. +.|.+++...+...+++.++|.|+| ++.+.+++++.|....
T Consensus 21 ~~~~lV~v~~~~G~----------~G~GE~~~~~~---~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~~~~~~~~ 86 (324)
T TIGR01928 21 RDCLIIELIDDKGN----------AGFGEVVAFQT---PWYTHETIATVKHIIEDFFEPNINK-EFEHPSEALELVRSLK 86 (324)
T ss_pred CcEEEEEEEECCCC----------eEEEeccccCC---CCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcc
Confidence 46788999999999 49999875321 2356667777777788889999999 9999999998885431
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
+ ...|++|||+||||+.||..|+|||++||| .+.++ |+|.+++.+ ..+...
T Consensus 87 -----~--~~~a~said~AlwDl~gk~~g~Pl~~llGg----~~~~i--~~y~~~~~~----------------~~~~~~ 137 (324)
T TIGR01928 87 -----G--TPMAKAGLEMALWDMYHKLPSFSLAYGQGK----LRDKA--PAGAVSGLA----------------NDEQML 137 (324)
T ss_pred -----C--CcHHHHHHHHHHHHHHHhhhCCcHHHHhCC----CCCeE--EEeEEcCCC----------------CHHHHH
Confidence 1 135999999999999999999999999987 23444 555542111 012234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.+...++|+.+| .|.| + +.+.+.++.+|+++ + + .++ +|+|
T Consensus 138 ~~a~~~~~~Gf~~~K----iKv~-------------~--~~d~~~v~~vr~~~---~-~-~~l~vDaN------------ 181 (324)
T TIGR01928 138 KQIESLKATGYKRIK----LKIT-------------P--QIMHQLVKLRRLRF---P-Q-IPLVIDAN------------ 181 (324)
T ss_pred HHHHHHHHcCCcEEE----EEeC-------------C--chhHHHHHHHHHhC---C-C-CcEEEECC------------
Confidence 555555556666655 3421 1 22356677776655 2 2 356 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.+++ .+ .+.+++|++.|||||++++|++++++|++++ +||++||+. .++++++++++.+++
T Consensus 182 -----------~~~~~~~a-~~-~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs~-~~~~~~~~~~~~~~~ 247 (324)
T TIGR01928 182 -----------ESYDLQDF-PR-LKELDRYQLLYIEEPFKIDDLSMLDELAKGTITPICLDESI-TSLDDARNLIELGNV 247 (324)
T ss_pred -----------CCCCHHHH-HH-HHHHhhCCCcEEECCCChhHHHHHHHHHhhcCCCEeeCCCc-CCHHHHHHHHHcCCC
Confidence 35677775 44 4568999999999999999999999999999 999999975 559999999999999
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
|++ ++|++++||||++++++++|+++|++++++++. |+.....+.++++...++..+|..
T Consensus 248 dvi------~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~-es~i~~aa~~hla~~~~~~~~~~~ 307 (324)
T TIGR01928 248 KVI------NIKPGRLGGLTEVQKAIETCREHGAKVWIGGML-ETGISRAFNVALASLGGNDYPGDV 307 (324)
T ss_pred CEE------EeCcchhcCHHHHHHHHHHHHHcCCeEEEcceE-cccHHHHHHHHHHhCCCCCCCCCC
Confidence 999 999999999999999999999999999887654 766554443333433445555543
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=318.35 Aligned_cols=284 Identities=17% Similarity=0.155 Sum_probs=203.3
Q ss_pred CceEEEEEEeCC---C--ceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCC--------
Q 011677 61 IPTVEVDLFTHK---G--MFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPI-------- 127 (479)
Q Consensus 61 ~~~v~V~v~t~~---G--~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~-------- 127 (479)
..++.|+|+|++ | + +|+||+.. +.... ...+++.++|.|+|+||.
T Consensus 26 ~~~~lV~v~td~~~~G~~~----------~G~Ge~~~----------~~~~~--~~~i~~~~~p~LiG~dp~~~~~~~~~ 83 (385)
T cd03326 26 LTTSLVAVVTDVVRDGRPV----------VGYGFDSI----------GRYAQ--GGLLRERFIPRLLAAAPDSLLDDAGG 83 (385)
T ss_pred cEEEEEEEEeccccCCCce----------eEEEeccC----------CchhH--HHHHHHHHHHHhcCCChHHhhhcccc
Confidence 456899999999 8 6 49999741 11111 234778899999999999
Q ss_pred --CHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccC--CCCcccccceEEeecCCccCCC
Q 011677 128 --LQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAG--KTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 128 --~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~--~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+.+++|+.|.+..... .+.....|++|||+||||+.||.+|+|||++|||..+ ..+.+ +|.|.. +|...+.
T Consensus 84 ~~~~~~l~~~~~~~~~~~-~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~--v~~y~~--~~~~~~~ 158 (385)
T cd03326 84 NLDPARAWAAMMRNEKPG-GHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPR--VPVYAA--GGYYYPG 158 (385)
T ss_pred cCCHHHHHHHHHhcCccC-CCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCe--EEEEEe--cCCCCCC
Confidence 4499999997522111 2223457999999999999999999999999998321 11234 555653 2211000
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW 283 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i 283 (479)
.+ .....+++.+...++|+++| .|.| . .+.+.+.+.++.+|+++ |.+ .++
T Consensus 159 -~~---------~~~~~~~a~~~~~~Gf~~~K----ikvg-------~-----~~~~~di~~v~avRe~~---G~~-~~l 208 (385)
T cd03326 159 -DD---------LGRLRDEMRRYLDRGYTVVK----IKIG-------G-----APLDEDLRRIEAALDVL---GDG-ARL 208 (385)
T ss_pred -CC---------HHHHHHHHHHHHHCCCCEEE----EeCC-------C-----CCHHHHHHHHHHHHHhc---CCC-CeE
Confidence 00 01133455555555665555 3433 1 11223455555555554 644 456
Q ss_pred -eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCc
Q 011677 284 -SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDL 361 (479)
Q Consensus 284 -iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~ 361 (479)
+|+| +.||.++++++. +.+++|++.|||||++++|++++++|++++ +||++||+
T Consensus 209 ~vDaN-----------------------~~w~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs 264 (385)
T cd03326 209 AVDAN-----------------------GRFDLETAIAYA-KALAPYGLRWYEEPGDPLDYALQAELADHYDGPIATGEN 264 (385)
T ss_pred EEECC-----------------------CCCCHHHHHHHH-HHhhCcCCCEEECCCCccCHHHHHHHHhhCCCCEEcCCC
Confidence 9983 367889999875 457999999999999999999999999999 99999998
Q ss_pred cccCHHHHHHHhcCCCC----ceecccCCCCcCccccccHHHHHHHHHHHhhCCCe--EEEecCCCCCchhHHHHhHhhc
Q 011677 362 LMSNPKRIERATLIPLA----MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWG--VVISHRSGETEDSFIADLSVGL 435 (479)
Q Consensus 362 ~~t~~~~~~~~i~~~a~----d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~--~~v~h~~get~d~~~~dlAv~~ 435 (479)
.. ++++++++++.+++ |++ |+|++++||||++++++++|+++|++ ++++|.. ..+.+|++.+.
T Consensus 265 ~~-~~~~~~~li~~~a~~~~~div------~~d~~~~GGit~~~kia~lA~a~gi~~~~~~pH~~----~~a~lhl~aa~ 333 (385)
T cd03326 265 LF-SLQDARNLLRYGGMRPDRDVL------QFDPGLSYGLPEYLRMLDVLEAHGWSRRRFFPHGG----HLMSLHIAAGL 333 (385)
T ss_pred cC-CHHHHHHHHHhCCccccCCEE------EeCchhhCCHHHHHHHHHHHHHcCCCCceeecchH----HHHHHHHHhcC
Confidence 65 49999999999988 999 99999999999999999999999998 3677852 34567777775
Q ss_pred C
Q 011677 436 A 436 (479)
Q Consensus 436 ~ 436 (479)
.
T Consensus 334 ~ 334 (385)
T cd03326 334 G 334 (385)
T ss_pred C
Confidence 4
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=318.14 Aligned_cols=281 Identities=22% Similarity=0.248 Sum_probs=205.1
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
..+.|+|+|++|++ |+||+....- +.+. ..... + .+++.++|++|.+.+.+|+.|.....
T Consensus 30 ~~v~v~i~~d~G~~----------G~GE~~~~~~---~~~~----~~~~~-~--~~~~~l~g~d~~~i~~~~~~~~~~~~ 89 (372)
T COG4948 30 TRVIVEITTDDGIV----------GWGEAVPGGR---ARYG----EEAEA-V--LLAPLLIGRDPFDIERIWQKLYRAGF 89 (372)
T ss_pred eEEEEEEEECCCce----------eeccccCccc---ccch----hhhhH-H--HHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 37999999999994 9999876421 1111 11111 1 68999999999999999998876322
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHH
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFG 221 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ 221 (479)
...+++..+|++|||+||||+.||..|+|||++||| ..+ ..++.|+...++ .+ ..+...
T Consensus 90 -~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg---~~r--~~v~~y~~~~~~------~~---------~~e~~~ 148 (372)
T COG4948 90 -ARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGG---KVR--DEVRAYASGGGG------ED---------PEEMAA 148 (372)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCC---cee--eeEEEEEecCCC------CC---------CHHHHH
Confidence 223556678999999999999999999999999998 333 445556653221 00 112233
Q ss_pred HHHHHHH-HHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 222 EALQMGS-ETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 222 ea~~~~~-e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
++.+... ++|+.+| .|.|. ++.+.+.++++.||+++ |.+ .+| +|+|
T Consensus 149 ~~~~~~~~~G~~~~K----lk~g~------------~~~~~d~~~v~avRe~~---g~~-~~l~iDan------------ 196 (372)
T COG4948 149 EAARALVELGFKALK----LKVGV------------GDGDEDLERVRALREAV---GDD-VRLMVDAN------------ 196 (372)
T ss_pred HHHHHHHhcCCceEE----ecCCC------------CchHHHHHHHHHHHHHh---CCC-ceEEEeCC------------
Confidence 3333333 4566655 34331 11224567777777777 644 456 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.++++++.+ .+++|+|.|||||++++|++++++|++.+ +||+.||+.. +.++++++++.+++
T Consensus 197 -----------~~~~~~~A~~~~~-~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~~PIa~gEs~~-~~~~~~~l~~~~a~ 263 (372)
T COG4948 197 -----------GGWTLEEAIRLAR-ALEEYGLEWIEEPLPPDDLEGLRELRAATSTPIAAGESVY-TRWDFRRLLEAGAV 263 (372)
T ss_pred -----------CCcCHHHHHHHHH-HhcccCcceEECCCCccCHHHHHHHHhcCCCCEecCcccc-cHHHHHHHHHcCCC
Confidence 3678889998754 57899999999999999999999999998 9999999865 59999999999999
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhc
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGL 435 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~ 435 (479)
|++ |+|++++||||++++++++|+.+++.+ .+|..+.....+.+|++.+.
T Consensus 264 div------~~d~~~~GGite~~kia~~A~~~~~~v-~~h~~~~i~~aa~~hla~~~ 313 (372)
T COG4948 264 DIV------QPDLARVGGITEALKIAALAEGFGVMV-GPHVEGPISLAAALHLAAAL 313 (372)
T ss_pred Cee------cCCccccCCHHHHHHHHHHHHHhCCce-eccCchHHHHHHHHHHhhcc
Confidence 999 999999999999999999999888774 56655333445556666554
|
|
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=317.84 Aligned_cols=272 Identities=16% Similarity=0.158 Sum_probs=200.4
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
.++.|+|+|++|++ |+||+.. ++ .+...+++.|+|.|+|+||.+.+.+|+.|.+...
T Consensus 57 ~~vlVrI~td~G~~----------G~Ge~~~----------~~---~~~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~ 113 (394)
T PRK15440 57 GTLVVEVEAENGQV----------GFAVSTA----------GE---MGAFIVEKHLNRFIEGKCVSDIELIWDQMLNATL 113 (394)
T ss_pred ceEEEEEEECCCCE----------EEEeCCC----------cH---HHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhcc
Confidence 56899999999994 9998421 11 2234577889999999999999999999976422
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHH
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFG 221 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ 221 (479)
....+++..+|++|||+||||+.||.+|+|||+|||| ..+.++| +|+. |+. | +
T Consensus 114 ~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LLGG---~~r~~v~--~y~~--~~~--------------~------~ 166 (394)
T PRK15440 114 YYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLLGG---AVRDELQ--FYAT--GAR--------------P------D 166 (394)
T ss_pred ccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHcCC---CCCCeeE--EEec--CCC--------------h------H
Confidence 1222345567999999999999999999999999998 3344555 4542 210 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCcccC-CCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 222 EALQMGSETYHHLKAVIAEKYGAHGCNVG-EDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 222 ea~~~~~e~~~~lk~~l~~K~G~~~~~vg-~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
.+. ..+|+++| .|.|. | .+|. ..++.+.++++.+|+++ |.+ ..+ +|||
T Consensus 167 ~a~---~~Gf~~~K----ik~~~-----g~~~g~--~~~~~di~~v~avReav---G~d-~~l~vDaN------------ 216 (394)
T PRK15440 167 LAK---EMGFIGGK----MPLHH-----GPADGD--AGLRKNAAMVADMREKV---GDD-FWLMLDCW------------ 216 (394)
T ss_pred HHH---hCCCCEEE----EcCCc-----Ccccch--HHHHHHHHHHHHHHHhh---CCC-CeEEEECC------------
Confidence 111 23566665 34321 1 0110 11233455555555555 755 456 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---hhhhcCCccccCHHHHHHHhcCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---QQVVGDDLLMSNPKRIERATLIP 376 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~~ 376 (479)
+.||.++++++. +.+++|++.|||||++++|++++++|++++ +||++||... ++++++++++.+
T Consensus 217 -----------~~~~~~~Ai~~~-~~le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE~~~-~~~~~~~li~~~ 283 (394)
T PRK15440 217 -----------MSLDVNYATKLA-HACAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVTSGEHEA-TLQGFRTLLEMG 283 (394)
T ss_pred -----------CCCCHHHHHHHH-HHhhhcCCcceeCCCCcccHHHHHHHHHhCCCCCceecCCCcc-CHHHHHHHHHcC
Confidence 367889999875 457999999999999999999999999997 6788899765 499999999999
Q ss_pred CCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCC
Q 011677 377 LAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 377 a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~ 437 (479)
++|++ |+|++++||||++++++++|+++|+++ ++|.+ ....+|++.+..+
T Consensus 284 a~Div------q~d~~~~GGit~~~kia~lA~a~gi~~-~pH~~----~~~~~hl~aa~~n 333 (394)
T PRK15440 284 CIDII------QPDVGWCGGLTELVKIAALAKARGQLV-VPHGS----SVYSHHFVITRTN 333 (394)
T ss_pred CCCEE------eCCccccCCHHHHHHHHHHHHHcCCee-cccCH----HHHHHHHHhhCcC
Confidence 99999 999999999999999999999999996 66853 2456788777643
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=315.47 Aligned_cols=306 Identities=19% Similarity=0.164 Sum_probs=217.0
Q ss_pred eeeEEEEEEEecC--------CCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHH
Q 011677 46 VITKIKARQILDS--------RGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERI 117 (479)
Q Consensus 46 ~I~~I~~~~i~ds--------~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l 117 (479)
+|++|+.+.+.-. .....+.|+|+|++|++ |+||+.+.. . .......+++.+
T Consensus 1 kI~~i~~~~~~~p~~~~~~~~~~~~~~~V~v~~~~G~~----------G~GE~~~~~-------~---~~~~~~~l~~~~ 60 (357)
T cd03316 1 KITDVETFVLRVPLPEPGGAVTWRNLVLVRVTTDDGIT----------GWGEAYPGG-------R---PSAVAAAIEDLL 60 (357)
T ss_pred CeeEEEEEEEecCCcccccccccceEEEEEEEeCCCCE----------EEEeccCCC-------C---chHHHHHHHHHH
Confidence 4777877776321 23567999999999984 999986531 1 233455677779
Q ss_pred HHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecC
Q 011677 118 SEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISG 197 (479)
Q Consensus 118 ~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~G 197 (479)
+|.|+|+++.+.+++++.|.+.....+.++....|++|||+||||+.||..|+|||++||| ..+.+ +|++..+.+
T Consensus 61 ~p~l~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg---~~~~~--v~~~~~~~~ 135 (357)
T cd03316 61 APLLIGRDPLDIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGG---KVRDR--VRVYASGGG 135 (357)
T ss_pred HHHccCCChHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCC---ccCCc--eeeEEecCC
Confidence 9999999999999999998764321111223367999999999999999999999999998 22344 444554322
Q ss_pred CccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcC
Q 011677 198 GKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG 277 (479)
Q Consensus 198 G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g 277 (479)
+. .+. ....+++.+...++|+.+| .|.|.. .......+.+.+.++.||+++ |
T Consensus 136 ~~-----~~~---------~~~~~~a~~~~~~Gf~~~K----ik~g~~-------~~~~~~~~~d~~~v~~ir~~~---g 187 (357)
T cd03316 136 YD-----DSP---------EELAEEAKRAVAEGFTAVK----LKVGGP-------DSGGEDLREDLARVRAVREAV---G 187 (357)
T ss_pred CC-----CCH---------HHHHHHHHHHHHcCCCEEE----EcCCCC-------CcchHHHHHHHHHHHHHHHhh---C
Confidence 10 001 1122333333344455444 343310 000000123455566665555 6
Q ss_pred CCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hh
Q 011677 278 IPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQ 355 (479)
Q Consensus 278 ~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~ 355 (479)
.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|++++ +|
T Consensus 188 ~~-~~l~vDaN-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~ip 242 (357)
T cd03316 188 PD-VDLMVDAN-----------------------GRWDLAEAIRLA-RALEEYDLFWFEEPVPPDDLEGLARLRQATSVP 242 (357)
T ss_pred CC-CEEEEECC-----------------------CCCCHHHHHHHH-HHhCccCCCeEcCCCCccCHHHHHHHHHhCCCC
Confidence 44 355 8883 367889999876 457899999999999999999999999999 99
Q ss_pred hhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhc
Q 011677 356 VVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGL 435 (479)
Q Consensus 356 I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~ 435 (479)
|++||+.. ++++++++++.+++|++ ++|++++||+|++++++++|+++|++++++++.+....++.+|||.++
T Consensus 243 i~~dE~~~-~~~~~~~~i~~~~~d~v------~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~~i~~aa~~hla~a~ 315 (357)
T cd03316 243 IAAGENLY-TRWEFRDLLEAGAVDII------QPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGGPIGLAASLHLAAAL 315 (357)
T ss_pred EEeccccc-cHHHHHHHHHhCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCeEeccCCCCHHHHHHHHHHHHhC
Confidence 99999764 59999999999999999 999999999999999999999999998776553322345777887776
Q ss_pred C
Q 011677 436 A 436 (479)
Q Consensus 436 ~ 436 (479)
.
T Consensus 316 ~ 316 (357)
T cd03316 316 P 316 (357)
T ss_pred c
Confidence 4
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=312.56 Aligned_cols=279 Identities=15% Similarity=0.154 Sum_probs=201.7
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
.+.+.|+|+|++|++ |+||+.+ . . .+...+.+.++|.|+|+||.+.+++|+.|.+..
T Consensus 32 ~~~~~Vri~td~G~~----------G~G~~~~-------~-----~-~~~~~~~~~l~p~liG~d~~~~~~~~~~~~~~~ 88 (368)
T cd03329 32 RKLALLTIETDEGAK----------GHAFGGR-------P-----V-TDPALVDRFLKKVLIGQDPLDRERLWQDLWRLQ 88 (368)
T ss_pred ceEEEEEEEECCCCe----------EEEecCC-------c-----h-hHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHh
Confidence 357999999999984 9987421 1 1 123456778999999999999999999997632
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
. + ....|++|||+||||+.||.+|+|||++||| . +.++| .|.+++.+... .... ......
T Consensus 89 ~----~-~~~~A~said~AlwDl~gk~~g~Pl~~LLGg---~-~~~v~--~y~s~~~~~~~-~~~~--------~~~~~~ 148 (368)
T cd03329 89 R----G-LTDRGLGLVDIALWDLAGKYLGLPVHRLLGG---Y-REKIP--AYASTMVGDDL-EGLE--------SPEAYA 148 (368)
T ss_pred c----C-cchhHHHHHHHHHHHHhhhhcCCcHHHHhhc---c-cccee--EEEecCCCccc-ccCC--------CHHHHH
Confidence 1 1 2346999999999999999999999999998 2 34544 45543222100 0000 001122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.+...++|+.+| .|. +. ....+.+.+.++.||+++ |.+ ..| +|+|
T Consensus 149 ~~a~~~~~~Gf~~~K----ik~-------~~----~~~~~~di~~i~~vR~~~---G~~-~~l~vDan------------ 197 (368)
T cd03329 149 DFAEECKALGYRAIK----LHP-------WG----PGVVRRDLKACLAVREAV---GPD-MRLMHDGA------------ 197 (368)
T ss_pred HHHHHHHHcCCCEEE----Eec-------CC----chhHHHHHHHHHHHHHHh---CCC-CeEEEECC------------
Confidence 333333333444443 221 10 011234566666666665 644 456 9983
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.++++++.+ .+++|++.|||||++++|++++++|++++ +||++||...+++++++++++.+++
T Consensus 198 -----------~~~~~~~A~~~~~-~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~ 265 (368)
T cd03329 198 -----------HWYSRADALRLGR-ALEELGFFWYEDPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGAT 265 (368)
T ss_pred -----------CCcCHHHHHHHHH-HhhhcCCCeEeCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCC
Confidence 3578899998754 47999999999999999999999999999 9999999765449999999999999
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcC
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLA 436 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~ 436 (479)
|++ |+|++++||||++++++++|+++|++++ .|.. .++.+|+|.++.
T Consensus 266 d~v------~~d~~~~GGit~~~~ia~~a~~~gi~~~-~h~~----~~a~~hlaaa~~ 312 (368)
T cd03329 266 DFL------RADVNLVGGITGAMKTAHLAEAFGLDVE-LHGN----GAANLHVIAAIR 312 (368)
T ss_pred CEE------ecCccccCCHHHHHHHHHHHHHcCCEEE-EECh----HHHHHHHHhcCC
Confidence 999 9999999999999999999999999975 4653 456788888764
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=312.74 Aligned_cols=288 Identities=19% Similarity=0.154 Sum_probs=201.4
Q ss_pred eeeEEEEEEEecC----------C-C---CceEEEEEEeCC-CceeeecCCCCCCCceeeeeeccCCCCccccccHHHHH
Q 011677 46 VITKIKARQILDS----------R-G---IPTVEVDLFTHK-GMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAV 110 (479)
Q Consensus 46 ~I~~I~~~~i~ds----------~-g---~~~v~V~v~t~~-G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av 110 (479)
+|++|+++.+.-. . . ...+.|+|+|++ |+ +|+||+... +.+.....
T Consensus 2 kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~----------~G~Ge~~~~---------~~~~~~~~ 62 (415)
T cd03324 2 KITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGL----------KGHGLTFTI---------GRGNEIVC 62 (415)
T ss_pred eEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCC----------EEEEEeccC---------CCchHHHH
Confidence 6889988887311 0 1 136899999999 99 499997431 22233333
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHh-hhc----c--CCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCC-
Q 011677 111 KNINERISEALVGMDPILQSQIDQAMID-LDK----T--EKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGK- 182 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~l~~-~~~----~--~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~- 182 (479)
. +.+.++|.|+|+||.+++.+++.|.+ +.. . ...+++...|++|||+||||++||.+|+|||+||||....
T Consensus 63 ~-~~~~lap~liG~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~ 141 (415)
T cd03324 63 A-AIEALAHLVVGRDLESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEE 141 (415)
T ss_pred H-HHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHH
Confidence 3 44679999999999998555444433 211 0 1012333579999999999999999999999999982100
Q ss_pred -----------------------------C--C----cccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHH
Q 011677 183 -----------------------------T--N----LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMG 227 (479)
Q Consensus 183 -----------------------------~--~----~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~ 227 (479)
. + .+-.+|.|+. ++|... .+. +...+++.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~-~~~~~~---~~~---------~~~~~~a~~~~ 208 (415)
T cd03324 142 LVSCIDFRYITDALTPEEALEILRRGQPGKAAREADLLAEGYPAYTT-SAGWLG---YSD---------EKLRRLCKEAL 208 (415)
T ss_pred hhhcccceeeccccCHHHHHHHhhhcccchhhhhhhhhccCCceeec-CCcccC---CCH---------HHHHHHHHHHH
Confidence 0 0 0023444542 222110 011 12335555555
Q ss_pred HHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCC
Q 011677 228 SETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPN 306 (479)
Q Consensus 228 ~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~ 306 (479)
.++|+.+| .|.| . +.+.+.+.++.+|+++ |.+ .++ +|+|
T Consensus 209 ~~Gf~~~K----iKvg-------~------~~~~d~~~v~avRe~v---G~~-~~L~vDaN------------------- 248 (415)
T cd03324 209 AQGFTHFK----LKVG-------A------DLEDDIRRCRLAREVI---GPD-NKLMIDAN------------------- 248 (415)
T ss_pred HcCCCEEE----EeCC-------C------CHHHHHHHHHHHHHhc---CCC-CeEEEECC-------------------
Confidence 56666665 3422 1 1223455565565554 755 456 9983
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh----hhhhcCCccccCHHHHHHHhcCCCCceec
Q 011677 307 KSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC----QQVVGDDLLMSNPKRIERATLIPLAMLFF 382 (479)
Q Consensus 307 ~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~----~~I~gde~~~t~~~~~~~~i~~~a~d~v~ 382 (479)
+.||.++++++.+ .+++|++.|||||++++|++++++|++++ +||++||+.. ++++++++++.+++|++
T Consensus 249 ----~~w~~~~A~~~~~-~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~-~~~~~~~ll~~~a~dil- 321 (415)
T cd03324 249 ----QRWDVPEAIEWVK-QLAEFKPWWIEEPTSPDDILGHAAIRKALAPLPIGVATGEHCQ-NRVVFKQLLQAGAIDVV- 321 (415)
T ss_pred ----CCCCHHHHHHHHH-HhhccCCCEEECCCCCCcHHHHHHHHHhcccCCCceecCCccC-CHHHHHHHHHcCCCCEE-
Confidence 3678899998765 57999999999999999999999999987 8999999865 59999999999999999
Q ss_pred ccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 383 SRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 383 ~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
|+|++++||||++++++++|+++|+++ ++|.
T Consensus 322 -----~~d~~~~GGit~~~kia~lA~a~gi~~-~pH~ 352 (415)
T cd03324 322 -----QIDSCRLGGVNENLAVLLMAAKFGVPV-CPHA 352 (415)
T ss_pred -----EeCccccCCHHHHHHHHHHHHHcCCeE-EEcC
Confidence 999999999999999999999999996 5675
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=308.54 Aligned_cols=311 Identities=13% Similarity=0.059 Sum_probs=208.4
Q ss_pred CceeeEEEEEEEe--cC-----C-----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--DS-----R-----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--ds-----~-----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
++.|+.++...|- |+ . ....+.|+|+|++|+ +|+||+.. ++++ ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~v~Td~Gi----------~G~GEa~~----------~~~~---~~ 59 (441)
T TIGR03247 3 TPVVTEMRVIPVAGHDSMLLNLSGAHAPFFTRNIVILTDSSGN----------TGVGEVPG----------GEKI---RA 59 (441)
T ss_pred CCEEeEEEEEeeccccchhccccccCCCcceEEEEEEEECCCC----------eEEEeCCC----------cHHH---HH
Confidence 4578888887772 11 1 245789999999999 49999632 1222 23
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhc---cCCCCc------hhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCC
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDK---TEKKGE------LGANAILAVSIAACKAGAAEKEVPLYKHIADLAGK 182 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~---~~~~~~------~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~ 182 (479)
.++ .++|.|+|+||.++++||+.|..... ..+.+. ....|++|||+||||+.||.+|+|||+|||+. .
T Consensus 60 ~l~-~lap~LiG~dp~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg--~ 136 (441)
T TIGR03247 60 TLE-DARPLVVGKPLGEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEG--Q 136 (441)
T ss_pred HHH-HHHHHhcCCCHHHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCC--C
Confidence 344 69999999999999999999965320 011111 13469999999999999999999999999931 2
Q ss_pred CCcccccceEEeecCCc-------cCCC-ccc-ccceee---ccCCCCcHHHHHHHHHH-HHHHHHHHHHhhhCCCCccc
Q 011677 183 TNLTLPVPAFTVISGGK-------HAGN-NLA-IQDIMI---LPIGASSFGEALQMGSE-TYHHLKAVIAEKYGAHGCNV 249 (479)
Q Consensus 183 ~~~~~Pvp~~~~i~GG~-------~~~~-~l~-~~e~~i---~p~~~~~~~ea~~~~~e-~~~~lk~~l~~K~G~~~~~v 249 (479)
.+.++|++.++. +.|. +..+ ..+ ....+. ........+++.+...+ +|+++| .|.|.
T Consensus 137 ~r~~vp~y~~~~-~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~K----iKvG~----- 206 (441)
T TIGR03247 137 QRDEVEMLGYLF-FIGDRKRTSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFK----LKGGV----- 206 (441)
T ss_pred ccceEEEeeeee-eccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEE----EecCC-----
Confidence 334555533221 1110 0000 000 000000 00011123333333322 565555 45331
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 011677 250 GEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCAD 328 (479)
Q Consensus 250 g~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~ 328 (479)
++.+.+.++++.+|+++. + .+| +|+| +.||.++++++.++ +++
T Consensus 207 -------~~~~~Di~~v~avRea~~----d-~~L~vDAN-----------------------~~wt~~~Ai~~~~~-Le~ 250 (441)
T TIGR03247 207 -------LRGEEEIEAVTALAKRFP----Q-ARITLDPN-----------------------GAWSLDEAIALCKD-LKG 250 (441)
T ss_pred -------CChHHHHHHHHHHHHhCC----C-CeEEEECC-----------------------CCCCHHHHHHHHHH-hhh
Confidence 111334566666665541 2 346 9983 46789999987655 688
Q ss_pred CCceeeecCCCccC----HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHH
Q 011677 329 YPIVSIEDPFDKED----WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEV 403 (479)
Q Consensus 329 ~~i~~iEdP~~~~D----~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i 403 (479)
| +.|||||++++| ++++++|++++ +||++||+. +++++++++++.+++|++ ++|+. +||||+++++
T Consensus 251 ~-~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~-~~~~~~~~li~~~avdi~------~~d~~-~gGIt~~~kI 321 (441)
T TIGR03247 251 V-LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIA-TDWRQMGHALQLQAVDIP------LADPH-FWTMQGSVRV 321 (441)
T ss_pred h-hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCcc-CCHHHHHHHHHhCCCCEE------eccCC-cchHHHHHHH
Confidence 9 999999999999 99999999999 999999975 459999999999999999 99995 6789999999
Q ss_pred HHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 404 VKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 404 ~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
+++|+++|+.+ .+|...++.. ++.+|||.++.
T Consensus 322 a~lA~a~Gi~v-~~h~~~~~~i~~aa~~hlaaa~p 355 (441)
T TIGR03247 322 AQMCHDWGLTW-GSHSNNHFDISLAMFTHVAAAAP 355 (441)
T ss_pred HHHHHHcCCEE-EEeCCccCHHHHHHHHHHHHhCC
Confidence 99999999986 5787555544 45667776653
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=304.64 Aligned_cols=304 Identities=15% Similarity=0.111 Sum_probs=204.8
Q ss_pred eeeEEEEEEEec--------CC----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHH
Q 011677 46 VITKIKARQILD--------SR----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNI 113 (479)
Q Consensus 46 ~I~~I~~~~i~d--------s~----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i 113 (479)
+|++|++..+.- +. ..+.+.|+|+|++|+ +|+||+.. + ..++..+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~----------~G~Ge~~~----------~---~~~~~~~ 57 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGN----------TGVGESPG----------G---AEALEAL 57 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCC----------eeccccCC----------C---HHHHHHH
Confidence 478888866631 11 246899999999999 49998532 1 1223334
Q ss_pred HHHHHHhhcCCCC-CCHHHHHHHHHhhhccCCCC---------chhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCC
Q 011677 114 NERISEALVGMDP-ILQSQIDQAMIDLDKTEKKG---------ELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKT 183 (479)
Q Consensus 114 ~~~l~p~LiG~d~-~~~~~id~~l~~~~~~~~~~---------~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~ 183 (479)
..++|.|+|+++ .+.+.+|+.|.+.......+ ++...|++|||+||||+.||.+|+|||++||| ..
T Consensus 58 -~~~~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG---~~ 133 (395)
T cd03323 58 -LEAARSLVGGDVFGAYLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGG---GQ 133 (395)
T ss_pred -HHHhHHHhCCCcchhhHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCC---Cc
Confidence 357889999888 57778898887532101111 13467999999999999999999999999998 33
Q ss_pred CcccccceEEeec--CCccCCCccc--ccc--eeeccCCCCcHHHHHHHHH-HHHHHHHHHHHhhhCCCCcccCCCCCCC
Q 011677 184 NLTLPVPAFTVIS--GGKHAGNNLA--IQD--IMILPIGASSFGEALQMGS-ETYHHLKAVIAEKYGAHGCNVGEDGGLA 256 (479)
Q Consensus 184 ~~~~Pvp~~~~i~--GG~~~~~~l~--~~e--~~i~p~~~~~~~ea~~~~~-e~~~~lk~~l~~K~G~~~~~vg~~G~~~ 256 (479)
+.++|+ |+.+. |+.+... .. ... +...+..+...+++.+... ++|+.+| .|.| .
T Consensus 134 r~~v~~--ya~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----iKvG-------~----- 194 (395)
T cd03323 134 RDSVPF--LAYLFYKGDRHKTD-LPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFK----LKGG-------V----- 194 (395)
T ss_pred cCeEEE--EEEeeecccccccc-ccccccccccccCCCHHHHHHHHHHHHHhcCCcEEE----EecC-------C-----
Confidence 445555 54432 2111000 00 000 0000001112223333322 2555554 3422 1
Q ss_pred CCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeee
Q 011677 257 PNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIE 335 (479)
Q Consensus 257 ~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iE 335 (479)
.+.+.+.+.++.+|+++ + + ..+ +|+| +.||.++++++.+ .+++ ++.|||
T Consensus 195 ~~~~~di~~v~avRea~---~-~-~~l~vDaN-----------------------~~w~~~~A~~~~~-~l~~-~l~~iE 244 (395)
T cd03323 195 LPGEEEIEAVKALAEAF---P-G-ARLRLDPN-----------------------GAWSLETAIRLAK-ELEG-VLAYLE 244 (395)
T ss_pred CCHHHHHHHHHHHHHhC---C-C-CcEEEeCC-----------------------CCcCHHHHHHHHH-hcCc-CCCEEE
Confidence 11123455666666655 3 2 356 9984 3678899998765 4788 999999
Q ss_pred cCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeE
Q 011677 336 DPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGV 414 (479)
Q Consensus 336 dP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~ 414 (479)
||++ |++++++|++++ +||+.||+. ++.++++++++.+++|++ |+|++++||||+++|++++|+++|+++
T Consensus 245 eP~~--d~~~~~~L~~~~~~PIa~dEs~-~~~~~~~~~i~~~avdil------~~d~~~~GGit~~~kia~~A~~~gi~~ 315 (395)
T cd03323 245 DPCG--GREGMAEFRRATGLPLATNMIV-TDFRQLGHAIQLNAVDIP------LADHHFWGGMRGSVRVAQVCETWGLGW 315 (395)
T ss_pred CCCC--CHHHHHHHHHhcCCCEEcCCcc-cCHHHHHHHHHcCCCcEE------eeccccccCHHHHHHHHHHHHHcCCeE
Confidence 9998 999999999999 999999975 459999999999999999 999999999999999999999999997
Q ss_pred EEecCCCCCchh--HHHHhHhhc
Q 011677 415 VISHRSGETEDS--FIADLSVGL 435 (479)
Q Consensus 415 ~v~h~~get~d~--~~~dlAv~~ 435 (479)
++ |...|+..+ +.+|+|.+.
T Consensus 316 ~~-h~~~e~~i~~aa~~hlaaa~ 337 (395)
T cd03323 316 GM-HSNNHLGISLAMMTHVAAAA 337 (395)
T ss_pred EE-ecCcccHHHHHHHHHHHHhC
Confidence 54 666776554 456666665
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=288.37 Aligned_cols=275 Identities=21% Similarity=0.205 Sum_probs=200.6
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
..+.|+|+|+ |++ |+||+.+++ .|.+++...+...+++ +.|.|+|+|+. .+++++.|....
T Consensus 26 ~~~~v~v~t~-G~~----------G~GE~~~~~-----~~~~~~~~~~~~~~~~-~~~~l~G~~~~-~~~~~~~l~~~~- 86 (316)
T cd03319 26 ENVIVEIELD-GIT----------GYGEAAPTP-----RVTGETVESVLAALKS-VRPALIGGDPR-LEKLLEALQELL- 86 (316)
T ss_pred eEEEEEEEEC-CEE----------EEEeecCCC-----CCCCCCHHHHHHHHHH-HHHHhcCCCch-HHHHHHHHHHhc-
Confidence 4688999999 984 999987642 2455555666555655 59999999999 999999887532
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHH
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFG 221 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ 221 (479)
. + ...|++|||+||||+.||..|+|+|++||| ..+.++|+ +..+.++ +.+ ...+
T Consensus 87 -~--~--~~~a~~aid~AlwDl~gk~~g~pv~~ll~g---~~~~~~~~--~~~~~~~-------~~~---------~~~~ 140 (316)
T cd03319 87 -P--G--NGAARAAVDIALWDLEAKLLGLPLYQLWGG---GAPRPLET--DYTISID-------TPE---------AMAA 140 (316)
T ss_pred -c--C--ChHHHHHHHHHHHHHHHHHcCCcHHHHcCC---CCCCCcee--EEEEeCC-------CHH---------HHHH
Confidence 1 1 245999999999999999999999999766 23344444 4333221 111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeec
Q 011677 222 EALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDL 300 (479)
Q Consensus 222 ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~ 300 (479)
.+.+...++|+.+| .|.|. +.+.+.+.++.+|+++ | + .++ +|+|
T Consensus 141 ~~~~~~~~Gf~~iK----ik~g~-------------~~~~d~~~v~~lr~~~---g-~-~~l~vD~n------------- 185 (316)
T cd03319 141 AAKKAAKRGFPLLK----IKLGG-------------DLEDDIERIRAIREAA---P-D-ARLRVDAN------------- 185 (316)
T ss_pred HHHHHHHcCCCEEE----EEeCC-------------ChhhHHHHHHHHHHhC---C-C-CeEEEeCC-------------
Confidence 33333334454444 34331 1123345555555444 6 4 456 8883
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCc
Q 011677 301 DFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAM 379 (479)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d 379 (479)
+.|+.++++++. +.++++++.|||||++++|++++++|++.+ +||++||.. .++++++++++.+++|
T Consensus 186 ----------~~~~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~-~~~~~~~~~~~~~~~d 253 (316)
T cd03319 186 ----------QGWTPEEAVELL-RELAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMADESC-FSAADAARLAGGGAYD 253 (316)
T ss_pred ----------CCcCHHHHHHHH-HHHHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCCC-CCHHHHHHHHhcCCCC
Confidence 356788999875 457999999999999999999999999999 999999975 4599999999999999
Q ss_pred eecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHHHhHhhc
Q 011677 380 LFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVGL 435 (479)
Q Consensus 380 ~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~~ 435 (479)
++ ++|++++||+|++++++++|+++|++++++++ .|+..+ +.+||+.++
T Consensus 254 ~v------~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~-~~~~i~~~a~~hl~a~~ 304 (316)
T cd03319 254 GI------NIKLMKTGGLTEALRIADLARAAGLKVMVGCM-VESSLSIAAAAHLAAAK 304 (316)
T ss_pred EE------EEeccccCCHHHHHHHHHHHHHcCCCEEEECc-hhhHHHHHHHHHHHhhc
Confidence 99 99999999999999999999999999876544 376554 455666664
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=250.08 Aligned_cols=131 Identities=60% Similarity=0.860 Sum_probs=115.4
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCc-eeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGM-FRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM 124 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~-~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~ 124 (479)
+|++|++|+|+||+|+|||+|+|+|++|. .++++|||+|+|.+|+.+++|+++.+|+|+++.+++++||+.|+|+|+|+
T Consensus 1 ~I~~v~~r~IlDsrG~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~ 80 (132)
T PF03952_consen 1 TITKVKAREILDSRGNPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGL 80 (132)
T ss_dssp BEEEEEEEEEE-TTS-EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTS
T ss_pred CeEEEEEEEEEcCCCCceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhc
Confidence 69999999999999999999999999995 59999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHH
Q 011677 125 DPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHI 176 (479)
Q Consensus 125 d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lL 176 (479)
+|.||++||++|.++|+|+|++++|+|++.|||+|+|+++|+.+|+|||+||
T Consensus 81 ~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 81 DPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp BTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred chhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 9999999999999999999999999999999999999999999999999997
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A .... |
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=268.89 Aligned_cols=261 Identities=17% Similarity=0.180 Sum_probs=185.1
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
+.++.|+|+ ++|.+ ||||+.+++ .| +++..++...+. .+.|.|+ . ..+.+.++..+
T Consensus 27 ~~~~lv~l~-~~G~~----------G~GE~~p~~-----~~-~~~~~~~~~~l~-~~~~~l~-~-~~~~~~~~~~~---- 82 (321)
T PRK15129 27 ARVVVVELE-EEGIK----------GTGECTPYP-----RY-GESDASVMAQIM-SVVPQLE-K-GLTREALQKLL---- 82 (321)
T ss_pred eeEEEEEEE-eCCeE----------EEEeeCCcC-----CC-CCCHHHHHHHHH-HHHHHHh-C-CCCHHHHHhhc----
Confidence 456889998 67984 999998752 35 467777776664 6899997 2 22333333321
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
+ + ..|++|||+||||+.||..|+|||++||| ..+.++| .+..++-+ ......
T Consensus 83 ~--~-----~~a~~aid~AlwDl~gk~~~~pl~~llGg---~~~~~i~--~~~~~~~~----------------~~~~~~ 134 (321)
T PRK15129 83 P--A-----GAARNAVDCALWDLAARQQQQSLAQLIGI---TLPETVT--TAQTVVIG----------------TPEQMA 134 (321)
T ss_pred c--C-----hHHHHHHHHHHHHHHHHHcCCcHHHHcCC---CCCCcee--EEEEecCC----------------CHHHHH
Confidence 1 1 35999999999999999999999999998 3233444 44333211 011223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.+...++|+.+| .|.| + +.+.+.++.+|+++ + + .++ +|+|
T Consensus 135 ~~~~~~~~~G~~~~K----lKv~-------------~--~~d~~~v~avr~~~---~-~-~~l~vDaN------------ 178 (321)
T PRK15129 135 NSASALWQAGAKLLK----VKLD-------------N--HLISERMVAIRSAV---P-D-ATLIVDAN------------ 178 (321)
T ss_pred HHHHHHHHcCCCEEE----EeCC-------------C--chHHHHHHHHHHhC---C-C-CeEEEECC------------
Confidence 444444445565554 3421 1 12356777777665 2 2 356 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.++++++.. .++++++.||||||+++|++++++++ . +||+.||+.. ++++++++. +++
T Consensus 179 -----------~~w~~~~A~~~~~-~l~~~~i~~iEqP~~~~~~~~l~~~~--~~~pia~dEs~~-~~~d~~~~~--~~~ 241 (321)
T PRK15129 179 -----------ESWRAEGLAARCQ-LLADLGVAMLEQPLPAQDDAALENFI--HPLPICADESCH-TRSSLKALK--GRY 241 (321)
T ss_pred -----------CCCCHHHHHHHHH-HHHhcCceEEECCCCCCcHHHHHHhc--cCCCEecCCCCC-CHHHHHHHH--hhC
Confidence 3678899998764 47999999999999999999988765 5 9999999865 499999884 789
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHh
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSV 433 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv 433 (479)
|++ ++|++++||||++++++++|+++|+++|++++. |+.....+.+++
T Consensus 242 d~v------~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~-es~i~~~a~~~l 289 (321)
T PRK15129 242 EMV------NIKLDKTGGLTEALALATEARAQGFALMLGCML-CTSRAISAALPL 289 (321)
T ss_pred CEE------EeCchhhCCHHHHHHHHHHHHHcCCcEEEecch-HHHHHHHHHHHH
Confidence 999 999999999999999999999999999998864 665544443333
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=255.14 Aligned_cols=208 Identities=19% Similarity=0.205 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHH
Q 011677 153 ILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYH 232 (479)
Q Consensus 153 ~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~ 232 (479)
++|||+||||+.||..|+|+|+++|+ . +.++|+ +..++.+ +. ....+++.+...++|+
T Consensus 45 ~~aid~Al~Dl~gk~~g~pv~~llG~---~-~~~i~~--~~~~~~~-------~~---------~~~~~~~~~~~~~G~~ 102 (265)
T cd03315 45 KAAVDMALWDLWGKRLGVPVYLLLGG---Y-RDRVRV--AHMLGLG-------EP---------AEVAEEARRALEAGFR 102 (265)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHcCC---C-CCceEE--EEEecCC-------CH---------HHHHHHHHHHHHCCCC
Confidence 69999999999999999999999987 2 344444 5443221 11 1123344334444454
Q ss_pred HHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCC
Q 011677 233 HLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQN 311 (479)
Q Consensus 233 ~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~ 311 (479)
.+| .|.| . .+ +++.+.++.||+++ |.+ ..+ +|+| +
T Consensus 103 ~~K----iKvg-------~----~~--~~d~~~v~~vr~~~---g~~-~~l~vDan-----------------------~ 138 (265)
T cd03315 103 TFK----LKVG-------R----DP--ARDVAVVAALREAV---GDD-AELRVDAN-----------------------R 138 (265)
T ss_pred EEE----EecC-------C----CH--HHHHHHHHHHHHhc---CCC-CEEEEeCC-----------------------C
Confidence 444 3422 1 11 23455566666555 543 355 8883 3
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
.||.++++++.+ .++++++.|||||++++|++++++|++++ +||++||... ++++++++++.+++|++ ++|
T Consensus 139 ~~~~~~a~~~~~-~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~-~~~~~~~~i~~~~~d~v------~~k 210 (265)
T cd03315 139 GWTPKQAIRALR-ALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESAF-TPHDAFRELALGAADAV------NIK 210 (265)
T ss_pred CcCHHHHHHHHH-HHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCCCC-CHHHHHHHHHhCCCCEE------EEe
Confidence 678899998764 57899999999999999999999999999 9999999764 59999999999999999 999
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHHHhHhhc
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVGL 435 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~~ 435 (479)
++++||||++++++++|+++|++++++++ .|+..+ +.+|+|.++
T Consensus 211 ~~~~GGi~~~~~~~~~A~~~gi~~~~~~~-~~s~i~~~a~~hlaa~~ 256 (265)
T cd03315 211 TAKTGGLTKAQRVLAVAEALGLPVMVGSM-IESGLGTLANAHLAAAL 256 (265)
T ss_pred cccccCHHHHHHHHHHHHHcCCcEEecCc-cchHHHHHHHHHHHHhC
Confidence 99999999999999999999999877654 466554 555666665
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=247.39 Aligned_cols=175 Identities=18% Similarity=0.259 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHH
Q 011677 153 ILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYH 232 (479)
Q Consensus 153 ~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~ 232 (479)
++|||+||||+.||.+|+|||++||| ..+.++|+ |. +
T Consensus 44 ~~aid~Al~Dl~gk~~~~pl~~llgg---~~~~~v~~--~~-------------------------~------------- 80 (229)
T cd00308 44 ISGIDMALWDLAAKALGVPLAELLGG---GSRDRVPA--YG-------------------------S------------- 80 (229)
T ss_pred HHHHHHHHHHHhHhHcCCcHHHHcCC---CCCCceec--cH-------------------------H-------------
Confidence 79999999999999999999999998 32334443 21 0
Q ss_pred HHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCC
Q 011677 233 HLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQN 311 (479)
Q Consensus 233 ~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~ 311 (479)
.+.++.||+++ |.+ .++ +|+| +
T Consensus 81 ------------------------------~~~i~~lr~~~---g~~-~~l~lDaN-----------------------~ 103 (229)
T cd00308 81 ------------------------------IERVRAVREAF---GPD-ARLAVDAN-----------------------G 103 (229)
T ss_pred ------------------------------HHHHHHHHHHh---CCC-CeEEEECC-----------------------C
Confidence 12345556655 533 355 9984 3
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
.||.++++++++. ++++++.|||||++++|++++++|++++ +||++||+. ++++++.++++.+++|++ ++|
T Consensus 104 ~~~~~~a~~~~~~-l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~-~~~~~~~~~~~~~~~d~~------~~k 175 (229)
T cd00308 104 AWTPKEAIRLIRA-LEKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAADESV-TTVDDALEALELGAVDIL------QIK 175 (229)
T ss_pred CCCHHHHHHHHHH-hhhcCCCeEECCCCccCHHHHHHHHhhCCCCEEeCCCC-CCHHHHHHHHHcCCCCEE------ecC
Confidence 5788999987654 7889999999999999999999999999 999999975 559999999999999999 999
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCc--hhHHHHhHhhcC
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETE--DSFIADLSVGLA 436 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~--d~~~~dlAv~~~ 436 (479)
++++||+|++++++++|+++|++++++++. |+. .++.+|+|.++.
T Consensus 176 ~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~-~s~i~~~a~~hlaa~~~ 222 (229)
T cd00308 176 PTRVGGLTESRRAADLAEAFGIRVMVHGTL-ESSIGTAAALHLAAALP 222 (229)
T ss_pred ccccCCHHHHHHHHHHHHHcCCEEeecCCC-CCHHHHHHHHHHHHhCC
Confidence 999999999999999999999998776654 543 456677777754
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=244.15 Aligned_cols=203 Identities=19% Similarity=0.156 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHH
Q 011677 152 AILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETY 231 (479)
Q Consensus 152 A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~ 231 (479)
|++|||+||||+.||..| || ..+. ++|.+..++++ +. ...+++.+...++|
T Consensus 48 a~aaid~AlwDl~gk~~g-------gg---~~~~--~v~~~~~~~~~-------~~----------~~~~~~~~~~~~Gf 98 (263)
T cd03320 48 LAFGIESALANLEALLVG-------FT---RPRN--RIPVNALLPAG-------DA----------AALGEAKAAYGGGY 98 (263)
T ss_pred HHHHHHHHHhcccccccC-------CC---CCcc--CcceeEEecCC-------CH----------HHHHHHHHHHhCCC
Confidence 789999999999999999 55 3233 45556554322 00 12234444444556
Q ss_pred HHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCC
Q 011677 232 HHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQ 310 (479)
Q Consensus 232 ~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~ 310 (479)
+.+| .|.|. .+.+++.+.++.+|+++ |.+ .++ +|+|
T Consensus 99 ~~~K----iKvg~------------~~~~~d~~~v~~vr~~~---g~~-~~l~vDaN----------------------- 135 (263)
T cd03320 99 RTVK----LKVGA------------TSFEEDLARLRALREAL---PAD-AKLRLDAN----------------------- 135 (263)
T ss_pred CEEE----EEECC------------CChHHHHHHHHHHHHHc---CCC-CeEEEeCC-----------------------
Confidence 5555 34331 11123455555555544 644 456 9984
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCc
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNL 389 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~i 389 (479)
+.||.++++++. +.+++|++.|||||++++|++++++|+ + +||++||+.. +++++.++++.+++|++ ++
T Consensus 136 ~~w~~~~A~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~--~~~PIa~dEs~~-~~~~~~~~~~~~~~d~v------~~ 205 (263)
T cd03320 136 GGWSLEEALAFL-EALAAGRIEYIEQPLPPDDLAELRRLA--AGVPIALDESLR-RLDDPLALAAAGALGAL------VL 205 (263)
T ss_pred CCCCHHHHHHHH-HhhcccCCceEECCCChHHHHHHHHhh--cCCCeeeCCccc-cccCHHHHHhcCCCCEE------EE
Confidence 357889999875 457899999999999999999999999 7 9999999865 48999999999999999 99
Q ss_pred CccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcCC
Q 011677 390 WINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLAS 437 (479)
Q Consensus 390 k~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~~ 437 (479)
|++++||+|++++++++|+++|++++++++. |+.. ++.+|++.++..
T Consensus 206 k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~-es~ig~aa~~hlaa~~~~ 254 (263)
T cd03320 206 KPALLGGPRALLELAEEARARGIPAVVSSAL-ESSIGLGALAHLAAALPP 254 (263)
T ss_pred CchhcCCHHHHHHHHHHHHHcCCCEEEEcch-hhHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999887554 6544 456677777643
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=243.30 Aligned_cols=257 Identities=15% Similarity=0.110 Sum_probs=183.3
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
+..+.|+|+ ++|.+ ||||+.++ +.|.+++...+...+. .+.|.|+|+++.+.. +.
T Consensus 21 ~~~~iv~l~-~~G~~----------G~GE~~p~-----~~~~~et~~~~~~~l~-~l~~~l~~~~~~~~~-------~~- 75 (307)
T TIGR01927 21 REGLIVRLT-DEGRT----------GWGEIAPL-----PGFGTETLAEALDFCR-ALIEEITRGDIEAID-------DQ- 75 (307)
T ss_pred eeEEEEEEE-ECCcE----------EEEEeecC-----CCCCcccHHHHHHHHH-HHHHHhcccchhhcc-------cc-
Confidence 356999999 55984 99999876 4688999998888787 489999998875332 10
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
+ ..+++|||+||||+.||. ++|. ... .|.+++ ..| +. ....
T Consensus 76 ---~-----~~~~~aie~Al~Dl~~k~-~~~~-----------~~~--~~~~~l-~~~-------~~---------~~~~ 116 (307)
T TIGR01927 76 ---L-----PSVAFGFESALIELESGD-ELPP-----------ASN--YYVALL-PAG-------DP---------ALLL 116 (307)
T ss_pred ---C-----cHHHHHHHHHHHHHhcCC-CCCc-----------ccc--cceeec-cCC-------CH---------HHHH
Confidence 1 247899999999999987 2111 111 222222 111 00 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.+ .++|+.+| .|.| . .+.+++.+.++.||+++ |.+ .+| +|+|
T Consensus 117 ~~~~~--~~Gf~~~K----iKvG-------~-----~~~~~d~~~v~~vr~~~---g~~-~~l~vDaN------------ 162 (307)
T TIGR01927 117 LRSAK--AEGFRTFK----WKVG-------V-----GELAREGMLVNLLLEAL---PDK-AELRLDAN------------ 162 (307)
T ss_pred HHHHH--hCCCCEEE----EEeC-------C-----CChHHHHHHHHHHHHHc---CCC-CeEEEeCC------------
Confidence 22222 34454444 3433 1 11233455666666555 543 456 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhh---CCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCAD---YPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLI 375 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~---~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~ 375 (479)
+.||.++++++.++ +++ |++.|||||++.+ +++++|++++ +||++||+.. ++++++++++.
T Consensus 163 -----------~~w~~~~A~~~~~~-l~~~~~~~i~~iEqP~~~~--~~~~~l~~~~~~Pia~dEs~~-~~~d~~~~~~~ 227 (307)
T TIGR01927 163 -----------GGLSPDEAQQFLKA-LDPNLRGRIAFLEEPLPDA--DEMSAFSEATGTAIALDESLW-ELPQLADEYGP 227 (307)
T ss_pred -----------CCCCHHHHHHHHHh-cccccCCCceEEeCCCCCH--HHHHHHHHhCCCCEEeCCCcC-ChHHHHHHHhc
Confidence 36788999987654 687 8999999999876 8999999999 9999999865 49999999999
Q ss_pred CCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcCC
Q 011677 376 PLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLAS 437 (479)
Q Consensus 376 ~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~~ 437 (479)
+++|++ ++|++++||+|++++++++|+++|+++|++|+. |+.. ++.+|||.+++.
T Consensus 228 ~~~d~i------~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~-es~i~~aa~~hlaa~~~~ 284 (307)
T TIGR01927 228 GWRGAL------VIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVF-ESSIALGQLARLAAKLSP 284 (307)
T ss_pred CCCceE------EECchhcCCHHHHHHHHHHHHHcCCCEEEECcc-chHHHHHHHHHHHHHhCC
Confidence 999999 999999999999999999999999999988765 6644 566788777653
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=274.01 Aligned_cols=299 Identities=15% Similarity=0.064 Sum_probs=197.7
Q ss_pred CceeeEEEEEEEe--------cCCC------CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHH-
Q 011677 44 PSVITKIKARQIL--------DSRG------IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNR- 108 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g------~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~- 108 (479)
+|+|++|+.+.+- .+.| +..+.|+|+|++|.+ |+||+.++. +.+++...
T Consensus 930 ~~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~----------G~GEa~pl~------~~~et~~~~ 993 (1655)
T PLN02980 930 LCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSV----------GFGEVAPLE------IHEEDLLDV 993 (1655)
T ss_pred cceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCE----------EEEecCCCC------CCccccccH
Confidence 6899999999883 2222 467999999999984 999987752 22333222
Q ss_pred --HHHHHH--------HHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 109 --AVKNIN--------ERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 109 --av~~i~--------~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
.+..+. +.++|.|+|+++ +.++..|.... +.....|++|||+||||+.||..|+|||++|||
T Consensus 994 ~~~l~~~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~~~-----~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg 1065 (1655)
T PLN02980 994 EEQLRFLLHVIKGAKISFMLPLLKGSFS---SWIWSELGIPP-----SSIFPSVRCGLEMAILNAIAVRHGSSLLNILDP 1065 (1655)
T ss_pred HHHHHHHHHHHhhhhhhhhhHhhcCcch---HHHHHHhhccc-----cccchHHHHHHHHHHHHHHHHHcCCcHHHHhCC
Confidence 121111 345799999954 33455542111 112357999999999999999999999999987
Q ss_pred ccCCC---CcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCC
Q 011677 179 LAGKT---NLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGL 255 (479)
Q Consensus 179 ~~~~~---~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~ 255 (479)
..... ..+..+|++.++.+. . ......+++.+...++|+.+| .|.| ..
T Consensus 1066 ~~~~~~~~~~~~~v~v~~~~~~~-------~--------~~~~~~~~a~~~~~~Gf~~~K----lKvG-------~~--- 1116 (1655)
T PLN02980 1066 YQKDENGSEQSHSVQICALLDSN-------G--------SPLEVAYVARKLVEEGFSAIK----LKVG-------RR--- 1116 (1655)
T ss_pred CCCCcceeccccceeeeeccCCC-------C--------CHHHHHHHHHHHHHcCCCEEE----EecC-------CC---
Confidence 21000 001123333222110 0 011123344444444555554 3433 10
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceee
Q 011677 256 APNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSI 334 (479)
Q Consensus 256 ~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~i 334 (479)
.+.+++.+.++.||+++ |.+ .+| +|+| +.||.++++++.. .+++++|.||
T Consensus 1117 -~~~~~D~~~i~alRe~~---G~~-~~LrlDAN-----------------------~~ws~~~A~~~~~-~L~~~~i~~i 1167 (1655)
T PLN02980 1117 -VSPIQDAAVIQEVRKAV---GYQ-IELRADAN-----------------------RNWTYEEAIEFGS-LVKSCNLKYI 1167 (1655)
T ss_pred -CCHHHHHHHHHHHHHHc---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HHhhcCCCEE
Confidence 11223345555555544 654 466 9984 3678999998765 5789999999
Q ss_pred ecCCCccCHHHHHHHHhhh-hhhhcCCccccCH-----HHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHh
Q 011677 335 EDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNP-----KRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLAN 408 (479)
Q Consensus 335 EdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~-----~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~ 408 (479)
|||++ +.+++++|++++ +||++||+..+ + ..++..++.+ ++.+ ++|++++||++++++++++|+
T Consensus 1168 EqPl~--~~~~l~~l~~~~~iPIA~DEs~~~-~~~~~~~~~~~~i~~~-~~~i------~iK~~~~GGit~~~~ia~~A~ 1237 (1655)
T PLN02980 1168 EEPVQ--DEDDLIKFCEETGLPVALDETIDK-FEECPLRMLTKYTHPG-IVAV------VIKPSVVGGFENAALIARWAQ 1237 (1655)
T ss_pred ECCCC--CHHHHHHHHHhCCCCEEeCCCcCC-cccchHHHHHHHHHCC-CeEE------EeChhhhCCHHHHHHHHHHHH
Confidence 99997 578999999999 99999998654 3 3466777666 4589 999999999999999999999
Q ss_pred hCCCeEEEecCCCCCch--hHHHHhHhhc
Q 011677 409 DVPWGVVISHRSGETED--SFIADLSVGL 435 (479)
Q Consensus 409 ~~g~~~~v~h~~get~d--~~~~dlAv~~ 435 (479)
++|+.+|++++. |+.. ++.+|||..+
T Consensus 1238 ~~gi~~~~~s~~-es~Ig~aA~~hlaa~~ 1265 (1655)
T PLN02980 1238 QHGKMAVISAAY-ESGLGLSAYIQFASYL 1265 (1655)
T ss_pred HcCCeEEecCcc-cCHHHHHHHHHHHHhc
Confidence 999999887654 7655 4566776664
|
|
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-26 Score=228.77 Aligned_cols=257 Identities=14% Similarity=0.130 Sum_probs=177.6
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
+..++|+|+|++|++ |+||+.++ +.|.+++..++...++ .+.|.|.+++ +..+...+
T Consensus 28 ~~~~iV~l~~~~G~~----------G~GE~~p~-----p~~~~et~~~~~~~l~-~l~~~l~~~~------~~~~~~~~- 84 (320)
T PRK02714 28 REGIILRLTDETGKI----------GWGEIAPL-----PWFGSETLEEALAFCQ-QLPGEITPEQ------IFSIPDAL- 84 (320)
T ss_pred eEEEEEEEEeCCCCe----------EEEEecCC-----CCCCcccHHHHHHHHH-hccccCCHHH------HHhhhhcC-
Confidence 467999999999984 99999875 4688998888876665 4677775432 22221111
Q ss_pred ccCCCCchhhhHHHHHHHHHHH-HHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCc
Q 011677 141 KTEKKGELGANAILAVSIAACK-AGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASS 219 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~d-a~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~ 219 (479)
..++.|+++| || +.++..+ . ...++|....++. ....
T Consensus 85 ---------~~~~~aie~A-~d~~~~~~~~--------~------~~~~~~~~~~i~~------------------~~~~ 122 (320)
T PRK02714 85 ---------PACQFGFESA-LENESGSRSN--------V------TLNPLSYSALLPA------------------GEAA 122 (320)
T ss_pred ---------CHHHHHHHHH-HHHHhccccc--------C------CcCCCceeeecCC------------------CHHH
Confidence 2479999999 66 4333211 1 1223444433311 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCcee
Q 011677 220 FGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKY 298 (479)
Q Consensus 220 ~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y 298 (479)
.+++.+...++|+.+| .|.| . .+.+++.+.++.||+++ |.+ ..+ +|+|
T Consensus 123 ~~~a~~~~~~G~~~~K----vKvG-------~-----~~~~~d~~~v~air~~~---g~~-~~l~vDaN----------- 171 (320)
T PRK02714 123 LQQWQTLWQQGYRTFK----WKIG-------V-----DPLEQELKIFEQLLERL---PAG-AKLRLDAN----------- 171 (320)
T ss_pred HHHHHHHHHcCCCEEE----EEEC-------C-----CChHHHHHHHHHHHHhc---CCC-CEEEEECC-----------
Confidence 4455555555665555 4533 1 11223345555555544 644 456 9984
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHHHHHhh---CCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhc
Q 011677 299 DLDFKSPNKSGQNFKSGEDMIEMYKELCAD---YPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATL 374 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~---~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~ 374 (479)
+.||.++++++... +++ |++.|||||++++|++++++|++++ +||++||+.. ++++++++++
T Consensus 172 ------------~~w~~~~A~~~~~~-l~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~~Pia~DEs~~-~~~d~~~~~~ 237 (320)
T PRK02714 172 ------------GGLSLEEAKRWLQL-CDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQTPIALDESVA-NLAQLQQCYQ 237 (320)
T ss_pred ------------CCCCHHHHHHHHHH-HhhccCCCccEEECCCCcccHHHHHHHHHhCCCCEEECCccC-CHHHHHHHHH
Confidence 36788999987544 676 8999999999999999999999999 9999999864 5999999999
Q ss_pred CCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcCC
Q 011677 375 IPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLAS 437 (479)
Q Consensus 375 ~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~~ 437 (479)
.+++|++ ++|++++||+++++ ++|+++|+++|++++. |+.. ++.+|||.++..
T Consensus 238 ~~a~d~v------~ik~~k~GGi~~~~---~~a~~~gi~~~~~~~~-es~ig~aa~~hlaa~~~~ 292 (320)
T PRK02714 238 QGWRGIF------VIKPAIAGSPSRLR---QFCQQHPLDAVFSSVF-ETAIGRKAALALAAELSR 292 (320)
T ss_pred cCCCCEE------EEcchhcCCHHHHH---HHHHHhCCCEEEEech-hhHHHHHHHHHHHHhCCC
Confidence 9999999 99999999999665 6788999999988764 6655 456677777653
|
|
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=226.27 Aligned_cols=251 Identities=17% Similarity=0.104 Sum_probs=176.0
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
+.++.|+|+ ++|++ ||||+.++ +.|.+++..++...+.+.+.|.+. .++.+.. .
T Consensus 27 ~~~viV~l~-d~G~~----------G~GE~~p~-----~~~~~et~~~~~~~l~~~~~~~~~-~~~~~~~-------~-- 80 (322)
T PRK05105 27 RDGLVVQLR-EGERE----------GWGEIAPL-----PGFSQETLEEAQEALLAWLNNWLA-GDCDDEL-------S-- 80 (322)
T ss_pred eeeEEEEEE-ECCcE----------EEEEeCCC-----CCCCccCHHHHHHHHHHHHHHhhc-Ccccccc-------c--
Confidence 467999996 88984 99999876 458899999998888887887654 4443310 1
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
....++.++++|+||+.||..+.|+|+ ..++ +-| +. ....
T Consensus 81 -------~~~~a~~~i~~Al~dl~gk~~~~~~~~-----------~~~l------~~~-------~~---------~~~~ 120 (322)
T PRK05105 81 -------QYPSVAFGLSCALAELAGTLPQAANYR-----------TAPL------CYG-------DP---------DELI 120 (322)
T ss_pred -------cCcHHHHHHHHHHHHhcCCCCCCCCcc-----------eeee------ecC-------CH---------HHHH
Confidence 113578999999999999988888752 1111 101 00 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.++ ++|+.+| .|.|. .+.+++.+.++.||+++ + + ..+ +|+|
T Consensus 121 ~~a~~~--~Gf~~~K----vKvG~------------~~~~~d~~~i~~vr~~~---~-~-~~l~vDaN------------ 165 (322)
T PRK05105 121 LKLADM--PGEKVAK----VKVGL------------YEAVRDGMLVNLLLEAI---P-D-LKLRLDAN------------ 165 (322)
T ss_pred HHHHHc--CCCCEEE----EEECC------------CCHHHHHHHHHHHHHhC---C-C-CeEEEECC------------
Confidence 333332 4565555 45331 11223445555555543 2 2 356 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhh---CCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCAD---YPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLI 375 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~---~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~ 375 (479)
+.||.++++++.++ +++ +++.|||||++. .+++++|++++ +||+.||+..+ ++ .+..+ .
T Consensus 166 -----------~~w~~~~A~~~~~~-l~~~~~~~i~~iEqP~~~--~~~~~~l~~~~~~PIa~DEs~~~-~~-~~~~~-~ 228 (322)
T PRK05105 166 -----------RGWTLEKAQQFAKY-VPPDYRHRIAFLEEPCKT--PDDSRAFARATGIAIAWDESLRE-PD-FQFEA-E 228 (322)
T ss_pred -----------CCCCHHHHHHHHHH-hhhhcCCCccEEECCCCC--HHHHHHHHHhCCCCEEECCCCCc-hh-hhhhh-c
Confidence 36789999987654 677 999999999964 56789999999 99999998754 54 44444 6
Q ss_pred CCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 376 PLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 376 ~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
+++|++ ++|++++||+|++++++++|+++|++++++++. |+.. ++.+|+|.+++
T Consensus 229 ~~~d~i------~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~-es~i~~aa~~hla~~~~ 284 (322)
T PRK05105 229 PGVRAI------VIKPTLTGSLEKCQELIEQAHALGLRAVISSSI-ESSLGLTQLARLAAWLT 284 (322)
T ss_pred CCCCEE------EECccccCCHHHHHHHHHHHHHcCCcEEEECch-hHHHHHHHHHHHHHhcC
Confidence 789999 999999999999999999999999999887654 7755 45567776763
|
|
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=165.80 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=108.4
Q ss_pred CchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHH-hhCCceeeecC
Q 011677 260 SSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELC-ADYPIVSIEDP 337 (479)
Q Consensus 260 ~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll-~~~~i~~iEdP 337 (479)
+++.+.++.||+++ |.+ ..| +|+| +.||.++++++.+. + ++++|.|||||
T Consensus 118 ~~Di~rv~avRe~l---Gpd-~~LrvDAN-----------------------~~ws~~~Ai~~~~~-L~e~~~l~~iEqP 169 (327)
T PRK02901 118 ADDVARVNAVRDAL---GPD-GRVRVDAN-----------------------GGWSVDEAVAAARA-LDADGPLEYVEQP 169 (327)
T ss_pred HHHHHHHHHHHHhc---CCC-CEEEEECC-----------------------CCCCHHHHHHHHHH-hhhccCceEEecC
Confidence 34455555555555 755 566 9984 35789999988655 6 67999999999
Q ss_pred CCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEE
Q 011677 338 FDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 338 ~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
++. ++++++|++++ +||++||+.. +.+++.++++.+++|++ ++|++++||||++++ +|+++|+++++
T Consensus 170 ~~~--~~~la~Lr~~~~vPIA~DEs~~-~~~d~~~l~~~~a~dvi------~ik~~~~GGit~~lk---iA~~~gi~v~v 237 (327)
T PRK02901 170 CAT--VEELAELRRRVGVPIAADESIR-RAEDPLRVARAGAADVA------VLKVAPLGGVRAALD---IAEQIGLPVVV 237 (327)
T ss_pred CCC--HHHHHHHHHhCCCCEEeCCCCC-CHHHHHHHHHcCCCCEE------EeCcchhCCHHHHHH---HHHHcCCcEEE
Confidence 974 99999999999 9999999765 59999999999999999 999999999999988 57899999988
Q ss_pred ecCCCCCchh--HHHHhHhhcC
Q 011677 417 SHRSGETEDS--FIADLSVGLA 436 (479)
Q Consensus 417 ~h~~get~d~--~~~dlAv~~~ 436 (479)
++ +-||..+ +.+|+|.++.
T Consensus 238 ~s-~~es~ig~aA~lhlaaalp 258 (327)
T PRK02901 238 SS-ALDTSVGIAAGLALAAALP 258 (327)
T ss_pred eC-CcccHHHHHHHHHHHHhCC
Confidence 64 4476554 4456666654
|
|
| >PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=123.02 Aligned_cols=92 Identities=25% Similarity=0.260 Sum_probs=76.6
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
++.+.|+|+|++|++ |+||+.... + +.......+.+.+.|.|+|+++.+.+.+++.+.+..
T Consensus 26 ~~~v~V~l~t~~G~~----------G~Ge~~~~~------~---~~~~~~~~~~~~l~~~l~g~~~~~~~~~~~~~~~~~ 86 (117)
T PF02746_consen 26 REFVLVRLETDDGVV----------GWGEAFPSP------G---TAETVASALEDYLAPLLIGQDPDDIEDIWQELYRLI 86 (117)
T ss_dssp EEEEEEEEEETTSEE----------EEEEEESSS------S---SHHHHHHHHHHTHHHHHTTSBTTGHHHHHHHHHHHT
T ss_pred eEEEEEEEEECCCCE----------EEEEeeCCc------c---hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 457999999999994 999987632 1 345566677888999999999999999998887532
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHh
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIA 177 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLg 177 (479)
. + ...|++|||+||||+.||..|+|||++||
T Consensus 87 ~----~--~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 87 K----G--NPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp S----S--HHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred c----c--hHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 1 1 36799999999999999999999999997
|
1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A .... |
| >COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-13 Score=127.05 Aligned_cols=295 Identities=17% Similarity=0.144 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhh-hccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCc
Q 011677 107 NRAVKNINERISEALVGMDPILQSQIDQAMIDL-DKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNL 185 (479)
Q Consensus 107 ~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~-~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~ 185 (479)
+.....++.+++|+|+|+|+.-.-.-......+ ++ ..+......+||.||.|++|...+..--+.+....+..+.
T Consensus 87 ~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~----~~LhtAvrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~ 162 (410)
T COG3799 87 EHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLIDG----NLLHTAVRYGVSQALLDAAALATGTTKTEVVCDEWQLPRV 162 (410)
T ss_pred hhhHHHHhhhhhhhhhCccHHhhcchhHHhHhhccC----CcchHHHHhhHHHHHHHHHHHhhccchheeehhhhCCCCc
Confidence 455667899999999999975432111222222 22 2355778899999999999999988877777665445555
Q ss_pred ccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHH----HHHHHHHHhhhCCCCcccCCCCCCCCCCCc
Q 011677 186 TLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETY----HHLKAVIAEKYGAHGCNVGEDGGLAPNISS 261 (479)
Q Consensus 186 ~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~----~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~ 261 (479)
.-|+|+|.- +| ......+-+|..++. +.+-+.. .++| ++-.+
T Consensus 163 te~vP~fgQ-SG-------------------d~R~~~vdkMiLK~vdVLPHgLiNsv-e~~G-------------~dG~~ 208 (410)
T COG3799 163 TESVPLFGQ-SG-------------------DDRYIAVDKMILKGVDVLPHGLINSV-EELG-------------FDGEK 208 (410)
T ss_pred ccccccccc-Cc-------------------chhhhhHHHHHHhhcCccchhhhhhH-HHhC-------------CchHH
Confidence 667887742 11 000111111110000 0000000 1222 22235
Q ss_pred hHHHHHHHHHHHHhc---CCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCC--ceeee
Q 011677 262 IREGLDLVKEAINRT---GIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYP--IVSIE 335 (479)
Q Consensus 262 ~~~~l~~v~~ai~~~---g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~--i~~iE 335 (479)
..|.++.+.+.+... ||. ..+ +|+-.- --..| .+++....+|.+++-++-+ ..+||
T Consensus 209 l~Eyv~Wls~R~~~~g~~gYh-P~lH~DVYG~--------iGe~f---------g~dp~r~a~yi~~l~~~a~~~pL~IE 270 (410)
T COG3799 209 LREYVRWLSDRILSKGTSGYH-PTLHIDVYGT--------IGEIF---------GMDPLRCAQYIASLEKEAQGLPLYIE 270 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCCC-ccEEEeehhh--------hHHHh---------CCCHHHHHHHHHHHHhhCCCCceeee
Confidence 677788887776654 454 234 776211 00001 3466667777777554433 66899
Q ss_pred cCCC----ccCHHHHHHHHhhh------hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHH
Q 011677 336 DPFD----KEDWEHTKSVLQIC------QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVK 405 (479)
Q Consensus 336 dP~~----~~D~~g~~~L~~~~------~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~ 405 (479)
-|++ +..++.++++++.+ +.|+.||. +.+.++++...+.++|+.| |||..-+|+|-+..+++.
T Consensus 271 gP~DaGs~~aQI~~~a~i~~~L~~~Gs~v~IVaDEw-Cnt~~Di~~F~dA~a~h~V------QiKTPDvGsi~~~~rAvl 343 (410)
T COG3799 271 GPVDAGSKPAQIRLLAAITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAAACHMV------QIKTPDVGSIHNIVRAVL 343 (410)
T ss_pred ccccCCCCHHHHHHHHHHHHHHhhcCCcceEeehhh-cccHHHHHHHHhhccccEE------EecCCCcchHHHHHHHHh
Confidence 9997 45678888888866 78999995 6679999999999999999 999999999999999999
Q ss_pred HHhhCCCeEEEecCCCCCchh--HHHHhHhhcCCCCc--ccCCCCchhHHHHhHHHHHHHHHh
Q 011677 406 LANDVPWGVVISHRSGETEDS--FIADLSVGLASGQI--KAGAPCRGERLAKYNQLLHIEEEL 464 (479)
Q Consensus 406 ~A~~~g~~~~v~h~~get~d~--~~~dlAv~~~~~~i--k~G~~~~~er~~kyn~ll~ie~~l 464 (479)
+|..+.+...+|..+.||.-+ ..+|.|+++.+-++ |||.-...---...|++-|.-.-|
T Consensus 344 yC~~~~~~AYvGGtCnETdvSAr~cvHValAt~a~~mLaKPGMGfDeg~~iV~NEmnRtlA~l 406 (410)
T COG3799 344 YCNSHSMEAYVGGTCNETDVSARTCVHVALATRAMRMLAKPGMGFDEGLDIVFNEMNRTLALL 406 (410)
T ss_pred hhccCccceeecccccccchhhhhhhhhhhhhcHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999998665 67899999888666 899877666667788887765544
|
|
| >PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=124.90 Aligned_cols=181 Identities=18% Similarity=0.233 Sum_probs=132.0
Q ss_pred CchHHHHHHHHHHHHhcCCCC--Cce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhh-CC-ceee
Q 011677 260 SSIREGLDLVKEAINRTGIPS--SKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCAD-YP-IVSI 334 (479)
Q Consensus 260 ~~~~~~l~~v~~ai~~~g~~~--~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~-~~-i~~i 334 (479)
+...+.++.|++.+...|... ..+ +|+-+. --.-|. -+.+.+++|+.++.+. .| -..|
T Consensus 47 e~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGt--------iG~~f~---------~d~~~~adYl~~l~~aA~P~~L~i 109 (248)
T PF07476_consen 47 EKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGT--------IGLAFD---------NDPDRMADYLAELEEAAAPFKLRI 109 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSTT---EEEEE-TTH--------HHHHTT---------T-HHHHHHHHHHHHHHHTTS-EEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccEEEEccch--------HHHHhC---------CCHHHHHHHHHHHHHhcCCCeeee
Confidence 456788899999988765431 124 887332 111121 1678899988876543 45 5689
Q ss_pred ecCCCccC----HHHHHHHHhhh------hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHH
Q 011677 335 EDPFDKED----WEHTKSVLQIC------QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVV 404 (479)
Q Consensus 335 EdP~~~~D----~~g~~~L~~~~------~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~ 404 (479)
|.|++..+ ++.+++||+.+ +.|++|| ++.+.++++.+.+.+++|.| |||..-.|||.++++++
T Consensus 110 EgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADE-WCNT~eDI~~F~da~A~dmV------QIKtPDLGgi~ntieAv 182 (248)
T PF07476_consen 110 EGPMDAGSREAQIEALAELREELDRRGINVEIVADE-WCNTLEDIREFADAKAADMV------QIKTPDLGGINNTIEAV 182 (248)
T ss_dssp E-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-T-T--SHHHHHHHHHTT-SSEE------EE-GGGGSSTHHHHHHH
T ss_pred eCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeeh-hcCCHHHHHHHHhcCCcCEE------EecCCCccchhhHHHHH
Confidence 99998655 57889998877 7799999 56779999999999999999 99999999999999999
Q ss_pred HHHhhCCCeEEEecCCCCCchh--HHHHhHhhcCCCCc--ccCCCCchhHHHHhHHHHHHHHHh
Q 011677 405 KLANDVPWGVVISHRSGETEDS--FIADLSVGLASGQI--KAGAPCRGERLAKYNQLLHIEEEL 464 (479)
Q Consensus 405 ~~A~~~g~~~~v~h~~get~d~--~~~dlAv~~~~~~i--k~G~~~~~er~~kyn~ll~ie~~l 464 (479)
-+|+++|+...+|..+.||+.+ ..+|+|+|+++.|+ |||.-...-=+..+|++.|+-..+
T Consensus 183 lyCk~~gvgaY~GGtCNETd~SArv~~hvalAt~p~q~LaKPGMG~DEG~mIV~NEM~R~lal~ 246 (248)
T PF07476_consen 183 LYCKEHGVGAYLGGTCNETDRSARVCVHVALATRPDQMLAKPGMGVDEGYMIVTNEMNRTLALL 246 (248)
T ss_dssp HHHHHTT-EEEE---TTS-HHHHHHHHHHHHHCT-SEEE--SSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCceeecccccccchhHHHHHHHHHhcCHHHHhcCCCCCccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999775 78999999999988 999988888889999999987654
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=83.96 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHH
Q 011677 266 LDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE 344 (479)
Q Consensus 266 l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~ 344 (479)
++.||+++ |.+ ..+ +|+| +.||.++++++.. .+++| .|||||++++|++
T Consensus 2 i~avr~~~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~--~~iEeP~~~~d~~ 51 (67)
T PF01188_consen 2 IRAVREAV---GPD-IDLMVDAN-----------------------QAWTLEEAIRLAR-ALEDY--EWIEEPLPPDDLD 51 (67)
T ss_dssp HHHHHHHH---STT-SEEEEE-T-----------------------TBBSHHHHHHHHH-HHGGG--SEEESSSSTTSHH
T ss_pred HHHHHHhh---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HcChh--heeecCCCCCCHH
Confidence 55666666 644 456 9984 3568899998765 47775 9999999999999
Q ss_pred HHHHHHhhh-hhhhcC
Q 011677 345 HTKSVLQIC-QQVVGD 359 (479)
Q Consensus 345 g~~~L~~~~-~~I~gd 359 (479)
++++|++++ +||++|
T Consensus 52 ~~~~l~~~~~~pia~d 67 (67)
T PF01188_consen 52 GLAELRQQTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHCSSEEEES
T ss_pred HHHHHHHhCCCCEEeC
Confidence 999999999 999876
|
1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C .... |
| >PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.5e-09 Score=88.46 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=56.3
Q ss_pred CCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 359 DDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 359 de~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
||+. .++++++++++.+++|++ |+|++++||||++++++++|+++|+++++ |.. ++.. ++.+||+.++.
T Consensus 1 gE~~-~~~~~~~~li~~~a~d~~------~~~~~~~GGit~~~~i~~~A~~~gi~~~~-h~~-~~~i~~aa~~hlaaa~~ 71 (111)
T PF13378_consen 1 GESL-FSLHDFRRLIEAGAVDIV------QIDPTRCGGITEALRIAALAEAHGIPVMP-HSM-ESGIGLAASLHLAAALP 71 (111)
T ss_dssp STTS-SSHHHHHHHHHTTSCSEE------EEBHHHHTSHHHHHHHHHHHHHTT-EEEE-BSS-SSHHHHHHHHHHHHTST
T ss_pred CCCC-CCHHHHHHHHHcCCCCEE------EeCchhcCCHHHHHHHHHHHHHhCCCEEe-cCC-CCcHHHHHHHHHHHhcC
Confidence 5655 459999999999999999 99999999999999999999999999866 545 6644 45566666654
|
... |
| >COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00027 Score=66.65 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCCCCCceeecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHh-hC--CceeeecCCC
Q 011677 263 REGLDLVKEAINRTGIPSSKWSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCA-DY--PIVSIEDPFD 339 (479)
Q Consensus 263 ~~~l~~v~~ai~~~g~~~~~iiD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~-~~--~i~~iEdP~~ 339 (479)
-..+.++-+|+.+.-+. +|+| ..||+..+..| .+.++ +| .|.|+|+|..
T Consensus 144 GmivnllLEaiPDL~LR----LDAN-----------------------RaWtp~Ka~~F-AkyV~p~~R~RIaFLEEPCk 195 (321)
T COG1441 144 GMIVNLLLEAIPDLHLR----LDAN-----------------------RAWTPLKAQQF-AKYVNPDYRSRIAFLEEPCK 195 (321)
T ss_pred chHHHHHHHhCccceee----eccc-----------------------ccCChHHHHHH-HHhcCHHHHHHHHHHhcccC
Confidence 44566777888433333 8883 25666655544 33343 24 4999999986
Q ss_pred ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEec
Q 011677 340 KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISH 418 (479)
Q Consensus 340 ~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h 418 (479)
-- ..-+.+...+ +-|+-||+... .+|.. -.+..+..| .||+.-+|.+....+.++-|++.|+..+||+
T Consensus 196 t~--aeSr~Fa~eTgIAIAWDEs~re--adF~~-e~e~gv~av------VIKPTL~GSl~r~~eli~qAh~lGl~AVISS 264 (321)
T COG1441 196 TR--AESRAFARETGIAIAWDESLRE--ADFAF-EAEPGVRAV------VIKPTLTGSLQRVRELVQQAHALGLTAVISS 264 (321)
T ss_pred Ch--HHHHHHHHhcCeeEeecchhcc--ccccc-ccCCCceEE------EecccchhhHHHHHHHHHHHHhcCceeEeec
Confidence 32 2345666778 99999997532 22322 234568899 9999999999999999999999999998877
Q ss_pred CCCCC--chhHHHHhH
Q 011677 419 RSGET--EDSFIADLS 432 (479)
Q Consensus 419 ~~get--~d~~~~dlA 432 (479)
.. |+ .-+.++-||
T Consensus 265 Si-ESSLGLtQLARiA 279 (321)
T COG1441 265 SI-ESSLGLTQLARIA 279 (321)
T ss_pred hh-hhhcCHHHHHHHH
Confidence 43 43 223444444
|
|
| >PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.2e-05 Score=52.85 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=28.0
Q ss_pred ccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhc
Q 011677 10 HMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKA 42 (479)
Q Consensus 10 ~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~ 42 (479)
|+++.+|+++..+++.++|.||+.|.++||.++
T Consensus 1 ~~l~~lL~~~~~~vl~~qP~Di~~F~a~yF~~L 33 (38)
T PF02197_consen 1 HGLQELLKEFTREVLREQPDDILQFAADYFEKL 33 (38)
T ss_dssp TTHHHHHHHHHHHHHHH--S-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 689999999999999999999999999999764
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B .... |
| >PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.3e-05 Score=51.70 Aligned_cols=38 Identities=16% Similarity=0.467 Sum_probs=32.5
Q ss_pred HHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhc
Q 011677 4 QEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKA 42 (479)
Q Consensus 4 ~~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~ 42 (479)
.+|++++ |-..|.++|-+++.+||+||+.|||+|+.+.
T Consensus 3 r~YL~~~-v~p~L~~gL~~l~~~rP~DPi~~La~~Ll~~ 40 (42)
T PF05186_consen 3 RQYLKET-VGPVLTEGLAELAKERPEDPIEFLAEYLLKH 40 (42)
T ss_dssp HHHHHHH-THHHHHHHHHHHHHH--SSHHHHHHHHHHHH
T ss_pred HHHHHHH-hHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 5799886 8899999999999999999999999999764
|
It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D. |
| >PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0026 Score=56.60 Aligned_cols=103 Identities=21% Similarity=0.212 Sum_probs=64.2
Q ss_pred eEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 63 TVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 63 ~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
++.|.+..++|-+ .+-+-..--.|-|- || |.|. ...-+..|++.++|.|+|+|..+..+.-+.+..+.
T Consensus 52 sisV~l~L~dG~va~GDCaaVQYSGagG----RD---PLF~---a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~~- 120 (159)
T PF05034_consen 52 SISVMLVLEDGQVAYGDCAAVQYSGAGG----RD---PLFL---AEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDELV- 120 (159)
T ss_dssp EEEEEEEETTS-EEEEEE---TTTTSTT----S----S------HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH-E-
T ss_pred EEEEEEEeCCCCEEEeeehheeecccCC----CC---Cccc---HHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhcc-
Confidence 6889999999976 22111100112211 11 2333 45667778999999999999999888777777651
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
+..++......+||.||.|+.|+..+.-.-+.|..
T Consensus 121 --~g~rlhtAiRYGvsQALL~A~A~a~~~tmaeVi~~ 155 (159)
T PF05034_consen 121 --DGKRLHTAIRYGVSQALLDAAAKAQRTTMAEVIAE 155 (159)
T ss_dssp --TTEE--HHHHHHHHHHHHHHHHHHCTS-HHHHHHH
T ss_pred --cCCcchhHHHHhHHHHHHHHHHHHcCCcHHHHHHH
Confidence 23357778899999999999999999887777654
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0055 Score=62.72 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhhCCceeee-----------cCC-CccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIE-----------DPF-DKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iE-----------dP~-~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
.++.++++++. +.++++++.||| .|+ +..+.+..++|++.+ +||++.+.. +++++++++++.+.+
T Consensus 237 g~~~~e~~~ia-~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i-~t~~~a~~~l~~g~a 314 (336)
T cd02932 237 GWDLEDSVELA-KALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLI-TDPEQAEAILESGRA 314 (336)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCC-CCHHHHHHHHHcCCC
Confidence 56788998765 557889999999 477 455678889999999 999988865 459999999999999
Q ss_pred cee
Q 011677 379 MLF 381 (479)
Q Consensus 379 d~v 381 (479)
|+|
T Consensus 315 D~V 317 (336)
T cd02932 315 DLV 317 (336)
T ss_pred Cee
Confidence 999
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00082 Score=45.94 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=30.6
Q ss_pred ccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhc
Q 011677 10 HMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKA 42 (479)
Q Consensus 10 ~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~ 42 (479)
|+++..|++...+++..+|.||+.|.++||.++
T Consensus 1 ~~~~~~L~~~~~~vl~~qP~d~~~f~~~yF~kL 33 (38)
T smart00394 1 HGLQALLEDLTVEVLRAQPSDLVQFAADYFEKL 33 (38)
T ss_pred CcHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 578899999999999999999999999999765
|
RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs). |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0055 Score=62.82 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHhhCCceeee-------cCCCc---c---------CHHHHHHHHhhh-hhhhcCCccccCHHHHHH
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIE-------DPFDK---E---------DWEHTKSVLQIC-QQVVGDDLLMSNPKRIER 371 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iE-------dP~~~---~---------D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~ 371 (479)
.+|.++++++. +.++++++.||| +|... . .++..+++++.+ +||++++.. ++++++++
T Consensus 232 g~~~eea~~ia-~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i-~t~~~a~~ 309 (338)
T cd04733 232 GFTEEDALEVV-EALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGF-RTRAAMEQ 309 (338)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCC-CCHHHHHH
Confidence 56889999775 557899999999 55532 1 135556888888 999988865 56999999
Q ss_pred HhcCCCCcee
Q 011677 372 ATLIPLAMLF 381 (479)
Q Consensus 372 ~i~~~a~d~v 381 (479)
+++++.+|+|
T Consensus 310 ~l~~g~aD~V 319 (338)
T cd04733 310 ALASGAVDGI 319 (338)
T ss_pred HHHcCCCCee
Confidence 9999999999
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.18 Score=51.21 Aligned_cols=68 Identities=15% Similarity=0.058 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhhCCceeee-------cCCC---------ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIE-------DPFD---------KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATL 374 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iE-------dP~~---------~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~ 374 (479)
.++.++++++. +.++++++.||+ +|.. ..+++..+.+++.+ +||++.... +++++++++++
T Consensus 224 g~~~~e~~~la-~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi-~t~~~a~~~l~ 301 (327)
T cd02803 224 GLTLEEAIEIA-KALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGI-RDPEVAEEILA 301 (327)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCC-CCHHHHHHHHH
Confidence 46788888765 557899999994 6543 45667778888888 998888765 45999999999
Q ss_pred CCCCcee
Q 011677 375 IPLAMLF 381 (479)
Q Consensus 375 ~~a~d~v 381 (479)
.+.+|.|
T Consensus 302 ~g~aD~V 308 (327)
T cd02803 302 EGKADLV 308 (327)
T ss_pred CCCCCee
Confidence 9899998
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.043 Score=56.59 Aligned_cols=68 Identities=12% Similarity=-0.023 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhhCCc-------eeeecCCCccC--------HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcC
Q 011677 312 FKSGEDMIEMYKELCADYPI-------VSIEDPFDKED--------WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLI 375 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i-------~~iEdP~~~~D--------~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~ 375 (479)
.++.++++++. +.++++++ .|.|+|.+..+ .+..+++++.+ +||++.+.. +++++++++++.
T Consensus 220 g~~~~e~~~i~-~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i-~~~~~a~~~i~~ 297 (353)
T cd02930 220 GSTWEEVVALA-KALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRI-NTPEVAERLLAD 297 (353)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCC-CCHHHHHHHHHC
Confidence 56888998765 55788885 34577765432 34457888888 999888765 459999999999
Q ss_pred CCCcee
Q 011677 376 PLAMLF 381 (479)
Q Consensus 376 ~a~d~v 381 (479)
+.+|+|
T Consensus 298 g~~D~V 303 (353)
T cd02930 298 GDADMV 303 (353)
T ss_pred CCCChh
Confidence 999998
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.16 Score=51.68 Aligned_cols=76 Identities=18% Similarity=0.109 Sum_probs=61.8
Q ss_pred HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcccccc-HHHHHHHHHHHhhCCCeEEEecCC
Q 011677 343 WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGT-VTEAIEVVKLANDVPWGVVISHRS 420 (479)
Q Consensus 343 ~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Gg-itea~~i~~~A~~~g~~~~v~h~~ 420 (479)
-+.+.++++++ +|+++|=.| +++.....++.+ +|.+ .|.|+.+|. -....++++.|+++|+++-+|-++
T Consensus 69 a~al~~I~~~~~iPlvADIHF--d~~lAl~a~~~G-~~~i------RINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~ 139 (360)
T PRK00366 69 AAALPEIKKQLPVPLVADIHF--DYRLALAAAEAG-ADAL------RINPGNIGKRDERVREVVEAAKDYGIPIRIGVNA 139 (360)
T ss_pred HHhHHHHHHcCCCCEEEecCC--CHHHHHHHHHhC-CCEE------EECCCCCCchHHHHHHHHHHHHHCCCCEEEecCC
Confidence 35567778888 999999764 577666666544 9999 999999999 678888999999999999999998
Q ss_pred CCCchhH
Q 011677 421 GETEDSF 427 (479)
Q Consensus 421 get~d~~ 427 (479)
|.-+..+
T Consensus 140 GSL~~~~ 146 (360)
T PRK00366 140 GSLEKDL 146 (360)
T ss_pred ccChHHH
Confidence 8765443
|
|
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.24 Score=49.99 Aligned_cols=74 Identities=16% Similarity=0.068 Sum_probs=58.7
Q ss_pred HHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCC
Q 011677 344 EHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGE 422 (479)
Q Consensus 344 ~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ge 422 (479)
+.+.++++.+ +|+++|=.| +.......+ +..+|.+ .|.|..+|.-....++++.|+++|+++-+|-++|.
T Consensus 62 ~al~~I~~~~~iPlVADIHF--d~~lAl~a~-~~g~dki------RINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GS 132 (346)
T TIGR00612 62 AAFEAIKEGTNVPLVADIHF--DYRLAALAM-AKGVAKV------RINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGS 132 (346)
T ss_pred HhHHHHHhCCCCCEEEeeCC--CcHHHHHHH-HhccCeE------EECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 4455666778 999999765 344344444 3459999 99999999999999999999999999999999887
Q ss_pred Cchh
Q 011677 423 TEDS 426 (479)
Q Consensus 423 t~d~ 426 (479)
-+..
T Consensus 133 L~~~ 136 (346)
T TIGR00612 133 LERR 136 (346)
T ss_pred CcHH
Confidence 6543
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.37 Score=48.44 Aligned_cols=74 Identities=22% Similarity=0.107 Sum_probs=60.6
Q ss_pred CHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCC
Q 011677 342 DWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRS 420 (479)
Q Consensus 342 D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ 420 (479)
+-+.+.++++++ +|+++|=.| +++.+...++.+ +|.+ .|.|+.+|--....++++.|+.+|+++-+|-++
T Consensus 62 ~A~A~~~Ik~~~~vPLVaDiHf--~~rla~~~~~~g-~~k~------RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~ 132 (361)
T COG0821 62 AAEALKEIKQRLNVPLVADIHF--DYRLALEAAECG-VDKV------RINPGNIGFKDRVREVVEAAKDKGIPIRIGVNA 132 (361)
T ss_pred HHHHHHHHHHhCCCCEEEEeec--cHHHHHHhhhcC-cceE------EECCcccCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 345677888899 999999765 456555555544 9999 999999999888999999999999999999988
Q ss_pred CCCc
Q 011677 421 GETE 424 (479)
Q Consensus 421 get~ 424 (479)
|..+
T Consensus 133 GSLe 136 (361)
T COG0821 133 GSLE 136 (361)
T ss_pred Cchh
Confidence 7643
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.6 Score=44.69 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhCCceee-------ec-CCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCcee
Q 011677 317 DMIEMYKELCADYPIVSI-------ED-PFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLF 381 (479)
Q Consensus 317 e~i~~~~~ll~~~~i~~i-------Ed-P~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v 381 (479)
++.++. +.+++.++.+| ++ +..+.+++..+++++.. +||+++... ++++++.++++.+.+|.|
T Consensus 139 ~~~~~~-~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi-~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 139 ETLELA-KALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDI-FSLEDALRCLEQTGVDGV 210 (231)
T ss_pred HHHHHH-HHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCC-CCHHHHHHHHHhcCCCEE
Confidence 566554 45788899899 66 66677999999999988 999988864 569999999988788988
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=87.75 E-value=2.2 Score=40.46 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccCH-HHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDW-EHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~-~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
+.+++++.. +.+-+.++..||=+++-.+. +..++++++. +.|-++- +.++++++++++.++-=+| -+-
T Consensus 18 ~~e~a~~~~-~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGT--Vl~~~~a~~a~~aGA~Fiv------sP~ 88 (204)
T TIGR01182 18 DVDDALPLA-KALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGT--VLNPEQLRQAVDAGAQFIV------SPG 88 (204)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEe--CCCHHHHHHHHHcCCCEEE------CCC
Confidence 678888765 45678899999999975544 6678888776 5444553 4569999999988744334 222
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcc
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIK 441 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik 441 (479)
. -.++++.|+++|+.++.|.++. |+ +.-|...|+..+|
T Consensus 89 ~--------~~~v~~~~~~~~i~~iPG~~Tp-tE----i~~A~~~Ga~~vK 126 (204)
T TIGR01182 89 L--------TPELAKHAQDHGIPIIPGVATP-SE----IMLALELGITALK 126 (204)
T ss_pred C--------CHHHHHHHHHcCCcEECCCCCH-HH----HHHHHHCCCCEEE
Confidence 2 1277888999999987766542 11 2334445666666
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.36 E-value=11 Score=36.99 Aligned_cols=92 Identities=15% Similarity=0.266 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcccccc
Q 011677 317 DMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGT 396 (479)
Q Consensus 317 e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Gg 396 (479)
+-++.+.+.+++++|.++=+|+++.+.+-..+... +++|.+.+. +|..-++.+-.. --.| ++|-++..+
T Consensus 66 ~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vd-ilqIgs~~~--~n~~LL~~va~t--gkPV------ilk~G~~~t 134 (250)
T PRK13397 66 QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLD-VIQVGARNM--QNFEFLKTLSHI--DKPI------LFKRGLMAT 134 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCC-EEEECcccc--cCHHHHHHHHcc--CCeE------EEeCCCCCC
Confidence 45556778889999999999999888777766311 166767764 455655555433 4678 999999999
Q ss_pred HHHHHHHHHHHhhCCC-eEEEecC
Q 011677 397 VTEAIEVVKLANDVPW-GVVISHR 419 (479)
Q Consensus 397 itea~~i~~~A~~~g~-~~~v~h~ 419 (479)
+.|++.+++...+.|- ++++-||
T Consensus 135 ~~e~~~A~e~i~~~Gn~~i~L~eR 158 (250)
T PRK13397 135 IEEYLGALSYLQDTGKSNIILCER 158 (250)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEcc
Confidence 9999999999888777 5778774
|
|
| >PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli | Back alignment and domain information |
|---|
Probab=85.82 E-value=0.86 Score=46.49 Aligned_cols=73 Identities=21% Similarity=0.152 Sum_probs=52.7
Q ss_pred HHHHHHHhh-----h-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcccc--------cc-HHHHHHHHHHHh
Q 011677 344 EHTKSVLQI-----C-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQI--------GT-VTEAIEVVKLAN 408 (479)
Q Consensus 344 ~g~~~L~~~-----~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~--------Gg-itea~~i~~~A~ 408 (479)
+.+++++++ + +|+++|=.| +++.....++. +|.+ .|.|+.+ |. -....++++.|+
T Consensus 59 ~al~~I~~~l~~~g~~iPlVADIHF--d~~lAl~a~~~--v~ki------RINPGNi~~~~~~~~g~~~~~~~~vv~~ak 128 (359)
T PF04551_consen 59 EALKEIKKRLRALGSPIPLVADIHF--DYRLALEAIEA--VDKI------RINPGNIVDEFQEELGSIREKVKEVVEAAK 128 (359)
T ss_dssp HHHHHHHHHHHCTT-SS-EEEEEST--TCHHHHHHHHC---SEE------EE-TTTSS----SS-SS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCCeeeecCC--CHHHHHHHHHH--hCeE------EECCCcccccccccccchHHHHHHHHHHHH
Confidence 344555555 5 999999764 46767677665 9999 9999999 88 677788999999
Q ss_pred hCCCeEEEecCCCCCchh
Q 011677 409 DVPWGVVISHRSGETEDS 426 (479)
Q Consensus 409 ~~g~~~~v~h~~get~d~ 426 (479)
++|+++-+|-++|.-+..
T Consensus 129 e~~ipIRIGvN~GSL~~~ 146 (359)
T PF04551_consen 129 ERGIPIRIGVNSGSLEKD 146 (359)
T ss_dssp HHT-EEEEEEEGGGS-HH
T ss_pred HCCCCEEEecccccCcHH
Confidence 999999999988876543
|
It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=85.54 E-value=9 Score=39.68 Aligned_cols=130 Identities=9% Similarity=0.112 Sum_probs=78.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCC---ccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCcee---c
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFD---KEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLF---F 382 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~---~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v---~ 382 (479)
..++.++.++++ +.+++.++..||=-++ ++|++..+.+.+.. ..+++ ....+.++++.+++.+ ++.| .
T Consensus 18 ~~~s~~~k~~ia-~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~--~~r~~~~di~~a~~~g-~~~i~i~~ 93 (365)
T TIGR02660 18 VAFTAAEKLAIA-RALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMA--WCRARDADIEAAARCG-VDAVHISI 93 (365)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEE--EcCCCHHHHHHHHcCC-cCEEEEEE
Confidence 367999999875 5589999999999554 45567777776553 22221 1123578888887664 3443 1
Q ss_pred ccCCCC----cCccccccHHHHHHHHHHHhhCCCeEEEecCC-CCCchhHHHHhH---hhcCCCCcccCC
Q 011677 383 SRYPSN----LWINQIGTVTEAIEVVKLANDVPWGVVISHRS-GETEDSFIADLS---VGLASGQIKAGA 444 (479)
Q Consensus 383 ~~~~~~----ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~-get~d~~~~dlA---v~~~~~~ik~G~ 444 (479)
+-++.. ++.++---+..+.+++++|+++|+.+.++... ..++..+++.++ ...|+..+.+.+
T Consensus 94 ~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 163 (365)
T TIGR02660 94 PVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFAD 163 (365)
T ss_pred ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcc
Confidence 111111 11111222444558889999999998887643 335666666654 445677775433
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=85.26 E-value=13 Score=36.70 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeec--CC-CccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCC---Cceecc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIED--PF-DKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPL---AMLFFS 383 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEd--P~-~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a---~d~v~~ 383 (479)
.++.++.++++. .+.+.++..||= |. .++|++..+.+++.. +.+.+= ...+.++++.+++.+. ++.+
T Consensus 16 ~~~~~~k~~i~~-~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l--~r~~~~~v~~a~~~~~~~~~~~i-- 90 (268)
T cd07940 16 SLTPEEKLEIAR-QLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGL--ARAVKKDIDAAAEALKPAKVDRI-- 90 (268)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEE--ccCCHhhHHHHHHhCCCCCCCEE--
Confidence 678899998764 578999999997 43 567887777777643 322210 1124667777666542 5555
Q ss_pred cCCCCcCc-------------cccccHHHHHHHHHHHhhCCCeEEEecC-CCCCchhHHHHhH---hhcCCCCcccCCCC
Q 011677 384 RYPSNLWI-------------NQIGTVTEAIEVVKLANDVPWGVVISHR-SGETEDSFIADLS---VGLASGQIKAGAPC 446 (479)
Q Consensus 384 ~~~~~ik~-------------~~~Ggitea~~i~~~A~~~g~~~~v~h~-~get~d~~~~dlA---v~~~~~~ik~G~~~ 446 (479)
.+-. ++---+-.+.++++.|++.|+.+.++.. .+.++..+++.++ ...|+..+.+.+..
T Consensus 91 ----~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 166 (268)
T cd07940 91 ----HTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTV 166 (268)
T ss_pred ----EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3311 1112345567888899999999887764 3335555555554 55677777544443
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.56 E-value=5.1 Score=43.31 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=83.3
Q ss_pred HHHHHHHHhhCCceeee-cCC---CccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc
Q 011677 319 IEMYKELCADYPIVSIE-DPF---DKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN 392 (479)
Q Consensus 319 i~~~~~ll~~~~i~~iE-dP~---~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~ 392 (479)
.+.... +-+.++..|+ |+- ...-++..++|++.. ++|++... .++++.+.+++.+ +|+| .+-+.
T Consensus 243 ~~~~~~-l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V--~t~~~a~~~~~aG-ad~I------~vg~g 312 (495)
T PTZ00314 243 IERAAA-LIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV--VTADQAKNLIDAG-ADGL------RIGMG 312 (495)
T ss_pred HHHHHH-HHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCc--CCHHHHHHHHHcC-CCEE------EECCc
Confidence 445444 4456777777 552 233356788888887 78877764 3589999998876 7787 43221
Q ss_pred -------c------cccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHH
Q 011677 393 -------Q------IGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLH 459 (479)
Q Consensus 393 -------~------~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ 459 (479)
+ ...++...++++.|++.|++++........ .-+--|+++|+..+-.|.. |..
T Consensus 313 ~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~---~di~kAla~GA~~Vm~G~~-----------~a~ 378 (495)
T PTZ00314 313 SGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNS---GDICKALALGADCVMLGSL-----------LAG 378 (495)
T ss_pred CCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCH---HHHHHHHHcCCCEEEECch-----------hcc
Confidence 1 134667788889999999998774433222 1223455668888888876 333
Q ss_pred HHHHhCCCccccCccc
Q 011677 460 IEEELGDHAIYAGEDY 475 (479)
Q Consensus 460 ie~~l~~~~~~~~~~~ 475 (479)
.+|..+....+.|+.|
T Consensus 379 ~~e~~~~~~~~~g~~~ 394 (495)
T PTZ00314 379 TEEAPGEYFFKDGVRL 394 (495)
T ss_pred ccccCCceeeeCCeEE
Confidence 4454554444555544
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.51 E-value=8 Score=38.30 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc
Q 011677 316 EDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG 395 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G 395 (479)
++-.+.+++.+++++|.++=+|+++.+.+-..++. ....|.+.+. +|..-++.+- +.--.| ++|-++.|
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~v-d~~kIga~~~--~n~~LL~~~a--~~gkPV------~lk~G~~~ 145 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYA-DMLQIGSRNM--QNFELLKEVG--KTKKPI------LLKRGMSA 145 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhC-CEEEECcccc--cCHHHHHHHh--cCCCcE------EEeCCCCC
Confidence 55555677888999999999999999988888772 2266667764 4555555553 334677 89999999
Q ss_pred cHHHHHHHHHHHhhCCC-eEEEecC
Q 011677 396 TVTEAIEVVKLANDVPW-GVVISHR 419 (479)
Q Consensus 396 gitea~~i~~~A~~~g~-~~~v~h~ 419 (479)
++.|++.++...+..|- .+++-|+
T Consensus 146 s~~e~~~A~e~i~~~Gn~~i~L~~r 170 (266)
T PRK13398 146 TLEEWLYAAEYIMSEGNENVVLCER 170 (266)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 99999999999887766 5777776
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.67 E-value=19 Score=35.66 Aligned_cols=132 Identities=8% Similarity=0.006 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec--CC-CccCHHHHHHHHhhh---hhhhc------CCccccCHHHHHHHhcCCCC
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED--PF-DKEDWEHTKSVLQIC---QQVVG------DDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd--P~-~~~D~~g~~~L~~~~---~~I~g------de~~~t~~~~~~~~i~~~a~ 378 (479)
..++.++.++++. .+.+.++..||= |+ .+.|.+.|+.+++.. ..+++ .+...-+...++.+++.+ +
T Consensus 15 ~~~s~e~k~~i~~-~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g-~ 92 (273)
T cd07941 15 ISFSVEDKLRIAR-KLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAG-T 92 (273)
T ss_pred CCCCHHHHHHHHH-HHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCC-C
Confidence 3678999998764 578999999997 54 677888888776531 11111 111111233555555543 4
Q ss_pred cee---cccCC----CCcCccccccHHHHHHHHHHHhhCCCeEEEecC---C-CCCchhHHHHhH---hhcCCCCcccCC
Q 011677 379 MLF---FSRYP----SNLWINQIGTVTEAIEVVKLANDVPWGVVISHR---S-GETEDSFIADLS---VGLASGQIKAGA 444 (479)
Q Consensus 379 d~v---~~~~~----~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~---~-get~d~~~~dlA---v~~~~~~ik~G~ 444 (479)
+.+ ++-++ .+++-++--.+..+.+++++|++.|+.+.++.. . ..++..+.++++ ...++..+.+.+
T Consensus 93 ~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~D 172 (273)
T cd07941 93 PVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCD 172 (273)
T ss_pred CEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 444 00000 011112223455678899999999999876533 1 234566677666 666777775443
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=83.54 E-value=6 Score=39.02 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc
Q 011677 316 EDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG 395 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G 395 (479)
++-++.+.+.+++++|.++=+|++.++.+-..++. ....|.+.+. +|..-++.+-.. --.| ++|.++.+
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~-d~lkI~s~~~--~n~~LL~~~a~~--gkPV------ilk~G~~~ 143 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYA-DILQIGARNM--QNFELLKEVGKQ--GKPV------LLKRGMGN 143 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhC-CEEEECcccc--cCHHHHHHHhcC--CCcE------EEeCCCCC
Confidence 45555677888999999999999999988887762 2266667764 456656655433 4578 89999999
Q ss_pred cHHHHHHHHHHHhhCCC-eEEEecC
Q 011677 396 TVTEAIEVVKLANDVPW-GVVISHR 419 (479)
Q Consensus 396 gitea~~i~~~A~~~g~-~~~v~h~ 419 (479)
++.|+..++...++.|- .+++-|+
T Consensus 144 t~~e~~~Ave~i~~~Gn~~i~l~~r 168 (260)
T TIGR01361 144 TIEEWLYAAEYILSSGNGNVILCER 168 (260)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 99999999999988777 5777775
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.49 E-value=4.9 Score=38.04 Aligned_cols=106 Identities=15% Similarity=0.056 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccC-HHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKED-WEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D-~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
+.+++.+.. +.+-+-+|..||=++.-.+ ++..++|+++. +-|-++- +.+++++++.++.++ +++. -+-
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGT--Vl~~e~a~~ai~aGA-~Fiv-----SP~ 84 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGT--ILNAKQFEDAAKAGS-RFIV-----SPG 84 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEe--CcCHHHHHHHHHcCC-CEEE-----CCC
Confidence 677888765 4467789999999998444 46678888776 4444443 457999999998884 5540 222
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcc
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIK 441 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik 441 (479)
.+ -++++.|+++|+.++.|.++. || +.-|...|+..+|
T Consensus 85 ~~--------~~vi~~a~~~~i~~iPG~~Tp-tE----i~~A~~~Ga~~vK 122 (201)
T PRK06015 85 TT--------QELLAAANDSDVPLLPGAATP-SE----VMALREEGYTVLK 122 (201)
T ss_pred CC--------HHHHHHHHHcCCCEeCCCCCH-HH----HHHHHHCCCCEEE
Confidence 22 267777889999987766542 11 2233444566665
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=83.36 E-value=7.8 Score=39.69 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc
Q 011677 316 EDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG 395 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G 395 (479)
++-++++.+.++++++.++=+|+++++.+-..++.. .++|.+.+. +|...++.+-.. ---| ++|-+..+
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~vd-~lqIgAr~~--~N~~LL~~va~~--~kPV------iLk~G~~~ 211 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEYVD-ILQIGARNM--QNFDLLKEVGKT--NKPV------LLKRGMSA 211 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhCC-eEEECcccc--cCHHHHHHHHcC--CCcE------EEeCCCCC
Confidence 455556777789999999999999999888877622 266666664 566666666443 3477 89999999
Q ss_pred cHHHHHHHHHHHhhCCC-eEEEecC
Q 011677 396 TVTEAIEVVKLANDVPW-GVVISHR 419 (479)
Q Consensus 396 gitea~~i~~~A~~~g~-~~~v~h~ 419 (479)
++.|++.++....+.|- .+++-|+
T Consensus 212 ti~E~l~A~e~i~~~GN~~viL~er 236 (335)
T PRK08673 212 TIEEWLMAAEYILAEGNPNVILCER 236 (335)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 99999999999887766 5777776
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.14 E-value=14 Score=38.03 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc
Q 011677 316 EDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG 395 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G 395 (479)
++-++++.+..+++++.++=+|++.++.+-..++. .+++|.+.+. +|..-++.+-.. --.| ++|-+..+
T Consensus 151 ~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~-d~lqIga~~~--~n~~LL~~va~t--~kPV------llk~G~~~ 219 (352)
T PRK13396 151 ESALELLAAAREATGLGIITEVMDAADLEKIAEVA-DVIQVGARNM--QNFSLLKKVGAQ--DKPV------LLKRGMAA 219 (352)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhC-CeEEECcccc--cCHHHHHHHHcc--CCeE------EEeCCCCC
Confidence 66777788878899999999999999988887762 2266666664 455656555443 4578 99999999
Q ss_pred cHHHHHHHHHHHhhCCC-eEEEecC
Q 011677 396 TVTEAIEVVKLANDVPW-GVVISHR 419 (479)
Q Consensus 396 gitea~~i~~~A~~~g~-~~~v~h~ 419 (479)
++.|++.++.+..+.|- ++++-|+
T Consensus 220 t~ee~~~A~e~i~~~Gn~~viL~er 244 (352)
T PRK13396 220 TIDEWLMAAEYILAAGNPNVILCER 244 (352)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEec
Confidence 99999999999988776 5777776
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.72 E-value=5.3 Score=38.16 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccC-HHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKED-WEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D-~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
+.+++++.. +.+.+.++..||=++...+ .+..++|+++. +.|.++- +++.++++.+++.+ ++++. .+
T Consensus 25 ~~~~a~~i~-~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGT--Vl~~~~a~~a~~aG-A~Fiv-----sP- 94 (212)
T PRK05718 25 KLEDAVPLA-KALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGT--VLNPEQLAQAIEAG-AQFIV-----SP- 94 (212)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEee--ccCHHHHHHHHHcC-CCEEE-----CC-
Confidence 678888765 4577899999999987554 46678888777 5455554 45689999999887 55551 22
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCccc
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKA 442 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~ 442 (479)
++++ ++++.|+++++.++.|.++. |+ +.-|...|+..+|+
T Consensus 95 -----~~~~--~vi~~a~~~~i~~iPG~~Tp-tE----i~~a~~~Ga~~vKl 134 (212)
T PRK05718 95 -----GLTP--PLLKAAQEGPIPLIPGVSTP-SE----LMLGMELGLRTFKF 134 (212)
T ss_pred -----CCCH--HHHHHHHHcCCCEeCCCCCH-HH----HHHHHHCCCCEEEE
Confidence 2223 66777888999976666532 11 33356667777776
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=82.68 E-value=21 Score=34.90 Aligned_cols=134 Identities=11% Similarity=0.076 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCC---ccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCcee---c
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFD---KEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLF---F 382 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~---~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v---~ 382 (479)
..++.++.++++ +.+++.++..||=-++ ++|++..+.+.+.. +.+.+= ...+.++++.+.+.+ ++.+ +
T Consensus 15 ~~~~~~~k~~i~-~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~--~r~~~~~v~~a~~~g-~~~i~i~~ 90 (259)
T cd07939 15 VAFSREEKLAIA-RALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVW--CRAVKEDIEAALRCG-VTAVHISI 90 (259)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEe--ccCCHHHHHHHHhCC-cCEEEEEE
Confidence 367899999875 5589999999999543 45566777776632 222211 113577888777654 4555 1
Q ss_pred ccCCC----CcCccccccHHHHHHHHHHHhhCCCeEEEecCC-CCCchhHHHHhH---hhcCCCCcccCCCCch
Q 011677 383 SRYPS----NLWINQIGTVTEAIEVVKLANDVPWGVVISHRS-GETEDSFIADLS---VGLASGQIKAGAPCRG 448 (479)
Q Consensus 383 ~~~~~----~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~-get~d~~~~dlA---v~~~~~~ik~G~~~~~ 448 (479)
+.++. +++-++--.+..+.++++.|++.|+.+.++... +.++..++..++ +..|+..+.+.+..+.
T Consensus 91 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~ 164 (259)
T cd07939 91 PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGI 164 (259)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 11111 111112233556678999999999998777743 335566655554 5567777765554443
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >KOG4109 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS25/DPY-30 [Transcription] | Back alignment and domain information |
|---|
Probab=81.68 E-value=1.7 Score=36.87 Aligned_cols=39 Identities=15% Similarity=0.427 Sum_probs=31.1
Q ss_pred HHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhcC
Q 011677 4 QEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAV 43 (479)
Q Consensus 4 ~~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~~ 43 (479)
..|+.+..+| +|---+..+..+||.||+.||++|+.+-+
T Consensus 67 RqYLdqtVaP-iLL~Gm~~lA~~rP~nPi~~LatyLlk~s 105 (116)
T KOG4109|consen 67 RQYLDQTVAP-ILLQGMAALAKERPSNPISFLATYLLKNS 105 (116)
T ss_pred hhhcccchhH-HHHHHHHHHHhhCCCCHHHHHHHHHhccc
Confidence 4677665544 55577889999999999999999999754
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.19 E-value=3.9 Score=41.67 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=60.4
Q ss_pred HHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccC---CCCcCccc------cccHHHHHHHHHHHhhCCCeEE
Q 011677 347 KSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRY---PSNLWINQ------IGTVTEAIEVVKLANDVPWGVV 415 (479)
Q Consensus 347 ~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~---~~~ik~~~------~Ggitea~~i~~~A~~~g~~~~ 415 (479)
+++++.+ ++|+++.. +| ++..+.+++.+ +|++ ++ |+-+-.+| ..-+|...++++.|+..|.+++
T Consensus 143 k~ik~~~P~~~vIaGNV-~T-~e~a~~Li~aG-AD~v--KVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiI 217 (346)
T PRK05096 143 AKAREAWPDKTICAGNV-VT-GEMVEELILSG-ADIV--KVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIV 217 (346)
T ss_pred HHHHHhCCCCcEEEecc-cC-HHHHHHHHHcC-CCEE--EEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEE
Confidence 3444444 66777774 44 88888888765 7777 21 22222333 3468999999999999999986
Q ss_pred EecCCCCCchhHHHHhHhhcCCCCcccCCCCch
Q 011677 416 ISHRSGETEDSFIADLSVGLASGQIKAGAPCRG 448 (479)
Q Consensus 416 v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~ 448 (479)
.-.....+.|- --|++.|+.++-.|++..+
T Consensus 218 ADGGi~~sGDI---~KAlaaGAd~VMlGsllAG 247 (346)
T PRK05096 218 SDGGCTVPGDV---AKAFGGGADFVMLGGMLAG 247 (346)
T ss_pred ecCCcccccHH---HHHHHcCCCEEEeChhhcC
Confidence 54433323221 2455667889999987544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 479 | ||||
| 3ucc_A | 439 | Asymmetric Complex Of Human Neuron Specific Enolase | 1e-136 | ||
| 1te6_A | 439 | Crystal Structure Of Human Neuron Specific Enolase | 1e-136 | ||
| 3uje_A | 443 | Asymmetric Complex Of Human Neuron Specific Enolase | 1e-136 | ||
| 2xsx_A | 435 | Crystal Structure Of Human Beta Enolase Enob Length | 1e-136 | ||
| 3b97_A | 433 | Crystal Structure Of Human Enolase 1 Length = 433 | 1e-133 | ||
| 2psn_A | 434 | Crystal Structure Of Enolase1 Length = 434 | 1e-133 | ||
| 1pdz_A | 434 | X-Ray Structure And Catalytic Mechanism Of Lobster | 1e-130 | ||
| 3otr_A | 452 | 2.75 Angstrom Crystal Structure Of Enolase 1 From T | 1e-118 | ||
| 3qtp_A | 441 | Crystal Structure Analysis Of Entamoeba Histolytica | 1e-116 | ||
| 2al2_B | 436 | Crystal Structure Analysis Of Enolase Mg Subunit Co | 1e-114 | ||
| 1l8p_A | 436 | Mg-phosphonoacetohydroxamate Complex Of S39a Yeast | 1e-114 | ||
| 2al2_A | 436 | Crystal Structure Analysis Of Enolase Mg Subunit Co | 1e-114 | ||
| 1els_A | 436 | Catalytic Metal Ion Binding In Enolase: The Crystal | 1e-114 | ||
| 1ebg_A | 436 | Chelation Of Ser 39 To Mg2+ Latches A Gate At The A | 1e-114 | ||
| 1p48_A | 436 | Reverse Protonation Is The Key To General Acid-Base | 1e-113 | ||
| 1p43_A | 436 | Reverse Protonation Is The Key To General Acid-Base | 1e-113 | ||
| 4g7f_A | 429 | Crystal Structure Of Enolase From Trypanosoma Cruzi | 1e-113 | ||
| 2xh7_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-113 | ||
| 2xh4_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-113 | ||
| 2xgz_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-113 | ||
| 2xh2_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-113 | ||
| 2xh0_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-112 | ||
| 1oep_A | 432 | Structure Of Trypanosoma Brucei Enolase Reveals The | 1e-112 | ||
| 2ptw_A | 432 | Crystal Structure Of The T. Brucei Enolase Complexe | 1e-111 | ||
| 1iyx_A | 432 | Crystal Structure Of Enolase From Enterococcus Hira | 4e-98 | ||
| 4a3r_A | 430 | Crystal Structure Of Enolase From Bacillus Subtilis | 5e-98 | ||
| 2pa6_A | 427 | Crystal Structure Of Mj0232 From Methanococcus Jann | 7e-96 | ||
| 3uj2_A | 449 | Crystal Structure Of An Enolase From Anaerostipes C | 2e-90 | ||
| 3h8a_A | 432 | Crystal Structure Of E. Coli Enolase Bound To Its C | 4e-90 | ||
| 1e9i_A | 431 | Enolase From E.Coli Length = 431 | 4e-90 | ||
| 4ewj_A | 443 | Structure Of The Enloase From Streptococcus Suis Se | 1e-89 | ||
| 1w6t_A | 444 | Crystal Structure Of Octameric Enolase From Strepto | 7e-88 | ||
| 3tqp_A | 428 | Structure Of An Enolase (Eno) From Coxiella Burneti | 4e-79 | ||
| 3qn3_A | 417 | Phosphopyruvate Hydratase From Campylobacter Jejuni | 6e-74 |
| >pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific Enolase-1-PgaPEP Length = 439 | Back alignment and structure |
|
| >pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8 Angstrom Length = 439 | Back alignment and structure |
|
| >pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific Enolase-3-PgaPEP Length = 443 | Back alignment and structure |
|
| >pdb|2XSX|A Chain A, Crystal Structure Of Human Beta Enolase Enob Length = 435 | Back alignment and structure |
|
| >pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1 Length = 433 | Back alignment and structure |
|
| >pdb|2PSN|A Chain A, Crystal Structure Of Enolase1 Length = 434 | Back alignment and structure |
|
| >pdb|1PDZ|A Chain A, X-Ray Structure And Catalytic Mechanism Of Lobster Enolase Length = 434 | Back alignment and structure |
|
| >pdb|3OTR|A Chain A, 2.75 Angstrom Crystal Structure Of Enolase 1 From Toxoplasma Gondii Length = 452 | Back alignment and structure |
|
| >pdb|3QTP|A Chain A, Crystal Structure Analysis Of Entamoeba Histolytica Enolase Length = 441 | Back alignment and structure |
|
| >pdb|2AL2|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex At Ph 8.0 Length = 436 | Back alignment and structure |
|
| >pdb|1L8P|A Chain A, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase 1 Length = 436 | Back alignment and structure |
|
| >pdb|2AL2|A Chain A, Crystal Structure Analysis Of Enolase Mg Subunit Complex At Ph 8.0 Length = 436 | Back alignment and structure |
|
| >pdb|1ELS|A Chain A, Catalytic Metal Ion Binding In Enolase: The Crystal Structure Of Enolase-Mn2+-Phosphonoacetohydroxamate Complex At 2.4 Angstroms Resolution Length = 436 | Back alignment and structure |
|
| >pdb|1EBG|A Chain A, Chelation Of Ser 39 To Mg2+ Latches A Gate At The Active Site Of Enolase: Structure Of The Bis(Mg2+) Complex Of Yeast Enolase And The Intermediate Analog Phosphonoacetohydroxamate At 2.1 Angstroms Resolution Length = 436 | Back alignment and structure |
|
| >pdb|1P48|A Chain A, Reverse Protonation Is The Key To General Acid-Base Catalysis In Enolase Length = 436 | Back alignment and structure |
|
| >pdb|1P43|A Chain A, Reverse Protonation Is The Key To General Acid-Base Catalysis In Enolase Length = 436 | Back alignment and structure |
|
| >pdb|4G7F|A Chain A, Crystal Structure Of Enolase From Trypanosoma Cruzi Length = 429 | Back alignment and structure |
|
| >pdb|2XH7|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The D321a Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|2XH4|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39a D321a Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|2XGZ|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39n D321r Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|2XH2|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39n D321a Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|2XH0|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39n Q167k D321r Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|1OEP|A Chain A, Structure Of Trypanosoma Brucei Enolase Reveals The Inhibitory Divalent Metal Site Length = 432 | Back alignment and structure |
|
| >pdb|2PTW|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With Sulphate, Identification Of A Metal Binding Site Iv Length = 432 | Back alignment and structure |
|
| >pdb|1IYX|A Chain A, Crystal Structure Of Enolase From Enterococcus Hirae Length = 432 | Back alignment and structure |
|
| >pdb|4A3R|A Chain A, Crystal Structure Of Enolase From Bacillus Subtilis. Length = 430 | Back alignment and structure |
|
| >pdb|2PA6|A Chain A, Crystal Structure Of Mj0232 From Methanococcus Jannaschii Length = 427 | Back alignment and structure |
|
| >pdb|3UJ2|A Chain A, Crystal Structure Of An Enolase From Anaerostipes Caccae (Efi Target Efi-502054) With Bound Mg And Sulfate Length = 449 | Back alignment and structure |
|
| >pdb|3H8A|A Chain A, Crystal Structure Of E. Coli Enolase Bound To Its Cognate Rnase E Recognition Domain Length = 432 | Back alignment and structure |
|
| >pdb|1E9I|A Chain A, Enolase From E.Coli Length = 431 | Back alignment and structure |
|
| >pdb|4EWJ|A Chain A, Structure Of The Enloase From Streptococcus Suis Serotype 2 Length = 443 | Back alignment and structure |
|
| >pdb|1W6T|A Chain A, Crystal Structure Of Octameric Enolase From Streptococcus Pneumoniae Length = 444 | Back alignment and structure |
|
| >pdb|3TQP|A Chain A, Structure Of An Enolase (Eno) From Coxiella Burnetii Length = 428 | Back alignment and structure |
|
| >pdb|3QN3|A Chain A, Phosphopyruvate Hydratase From Campylobacter Jejuni. Length = 417 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 479 | |||
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 0.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 0.0 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 0.0 | |
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 0.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 0.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 0.0 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 0.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 0.0 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 0.0 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 0.0 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 1e-175 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 2e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 5e-08 |
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A Length = 439 | Back alignment and structure |
|---|
Score = 628 bits (1623), Expect = 0.0
Identities = 246/440 (55%), Positives = 313/440 (71%), Gaps = 23/440 (5%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I KI AR+ILDSRG PTVEVDL+T KG+FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN I+ AL+ G+ + Q ++D M++LD TE K + GANAIL VS+A CKAG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAE+E+PLY+HIA LAG ++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+
Sbjct: 122 AAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 181
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW- 283
++G+E YH LK VI +KYG NVG++GG APNI E L+LVKEAI++ G
Sbjct: 182 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVI 241
Query: 284 -SDCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKE 341
D +S Y KYDLDFKSP + +G+ + +Y++ DYP+VSIEDPFD++
Sbjct: 242 GMDVAAS--EFYRDGKYDLDFKSPTDPSRYI-TGDQLGALYQDFVRDYPVVSIEDPFDQD 298
Query: 342 DWEHTKSVLQ-ICQQVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQIGT 396
DW + Q+VGDDL ++NPKRIERA + +L L +NQIG+
Sbjct: 299 DWAAWSKFTANVGIQIVGDDLTVTNPKRIERA--VEEKACNCLL--------LKVNQIGS 348
Query: 397 VTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQ 456
VTEAI+ KLA + WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQ
Sbjct: 349 VTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ 408
Query: 457 LLHIEEELGDHAIYAGEDYR 476
L+ IEEELGD A +AG ++R
Sbjct: 409 LMRIEEELGDEARFAGHNFR 428
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... Length = 436 | Back alignment and structure |
|---|
Score = 625 bits (1614), Expect = 0.0
Identities = 222/443 (50%), Positives = 294/443 (66%), Gaps = 24/443 (5%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
++K+ AR + DSRG PTVEV+L T KG+FR+ VPSG +G++EALE+RDGDK ++G V
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
AVKN+N+ I+ A V +D Q +D +I LD T K +LGANAIL VS+AA +A
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 165 AAEKEVPLYKHIADLAGKTN--LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGE 222
AAEK VPLYKH+ADL+ LPVP V++GG HAG LA+Q+ MI P GA +F E
Sbjct: 122 AAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAE 181
Query: 223 ALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSK 282
AL++GSE YH+LK++ ++YGA NVG++GG+APNI + E LDL+ +AI G
Sbjct: 182 ALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKV 241
Query: 283 W--SDCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFD 339
DC SS + KYDLDFK+PN + +G + ++Y L YPIVSIEDPF
Sbjct: 242 KIGLDCASS--EFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFA 299
Query: 340 KEDWEHTKSVLQICQ-QVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQI 394
++DWE + Q+V DDL ++NPKRI A I A+L L +NQI
Sbjct: 300 EDDWEAWSHFFKTAGIQIVADDLTVTNPKRIATA--IEKKAADALL--------LKVNQI 349
Query: 395 GTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKY 454
GT++E+I+ + + WGV++SHRSGETED+FIADL VGL +GQIK GAP R ERLAK
Sbjct: 350 GTLSESIKAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKL 409
Query: 455 NQLLHIEEELGDHAIYAGEDYRQ 477
NQLL IEEELGD+A++AGE++
Sbjct: 410 NQLLRIEEELGDNAVFAGENFHH 432
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} Length = 441 | Back alignment and structure |
|---|
Score = 625 bits (1614), Expect = 0.0
Identities = 222/443 (50%), Positives = 296/443 (66%), Gaps = 26/443 (5%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I K+ AR+ILDSRG PT+EV++ T KGMFR+ VPSG +G++EA+ELRDGDK Y G V
Sbjct: 8 IQKVHAREILDSRGNPTIEVEITTGKGMFRSCVPSGASTGVHEAVELRDGDKKRYGGKGV 67
Query: 107 NRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAA 166
+AV+N+N I AL+G + + Q+++D+ MI LD T KG+LGANAIL S++ C+A AA
Sbjct: 68 LKAVENVNTIIGPALLGKNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICRAAAA 127
Query: 167 EKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQM 226
EK +PLYK++A+L G +T+PVP F VI+GG HAGN LA+Q+ MI P GA++F EAL+M
Sbjct: 128 EKGLPLYKYLAELTGHKEMTMPVPCFNVINGGAHAGNALAMQEFMICPTGATNFHEALRM 187
Query: 227 GSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSKWS- 284
+ETY LK VI KYG NVG++GG APN+S RE LDL+ EAI + G + +
Sbjct: 188 AAETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAGYTGKIEIAM 247
Query: 285 DCKSS-MHNIYSTKYDLDFKSP--NKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKE 341
DC +S +N + KYDL K P K K + +I Y + YPI SIEDPF ++
Sbjct: 248 DCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIASIEDPFAED 307
Query: 342 DWEH----TKSVLQICQQVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQ 393
DW T Q+VGDDLL++NP R++ A + ++L + +NQ
Sbjct: 308 DWAAWNKFTVEHGNF--QIVGDDLLVTNPARVQMA--MDKNACNSVL--------IKVNQ 355
Query: 394 IGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAK 453
IGT+TE + +K+A + WGV+ SHRSGETED+FIADL VGL QIK GAPCR ERL K
Sbjct: 356 IGTLTETFKTIKMAQEKGWGVMASHRSGETEDTFIADLVVGLNCKQIKTGAPCRSERLCK 415
Query: 454 YNQLLHIEEELGDHAIYAGEDYR 476
YNQL+ IEEELG+ YAG+++R
Sbjct: 416 YNQLMRIEEELGN-IPYAGKNWR 437
|
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} Length = 452 | Back alignment and structure |
|---|
Score = 622 bits (1606), Expect = 0.0
Identities = 231/452 (51%), Positives = 296/452 (65%), Gaps = 30/452 (6%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGN 104
VI I AR+ILDSRG PT+EVD+ T G+FRA+VPSG +G+YEALELRD D YLG
Sbjct: 2 VVIKDIVAREILDSRGNPTIEVDVSTEGGVFRAAVPSGASTGIYEALELRDKDPKRYLGK 61
Query: 105 SVNRAVKNINERISEALVGMDPILQSQIDQAMID-LDKTE-----KKGELGANAILAVSI 158
V AV+ + + I AL+G DP Q ID M++ LD T+ K +LGANAIL VSI
Sbjct: 62 GVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSI 121
Query: 159 AACKAGAAEKEVPLYKHIADLAGKT--NLTLPVPAFTVISGGKHAGNNLAIQDIMILPIG 216
A C+AGAA K +PLYK+IA LAGKT + +PVP F VI+GG+HAGN LA+Q+ +I P+G
Sbjct: 122 ACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIAPVG 181
Query: 217 ASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRT 276
A + EA++ GSETYHHLK VI KYG NVG++GG APN+++ E L+L+ EAI
Sbjct: 182 APNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKAA 241
Query: 277 GIPSSKW--SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVS 333
G D +S + KYDLD+K K+ +GE + E+Y+ YPI+S
Sbjct: 242 GYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPIIS 301
Query: 334 IEDPFDKEDWEH----TKSVLQICQQVVGDDLLMSNPKRIERATLIPL----AMLFFSRY 385
+EDPFD++D+ TK V + Q V+GDD+L++N RIE+A + +L
Sbjct: 302 VEDPFDQDDFASFSAFTKDVGEKTQ-VIGDDILVTNILRIEKA--LKDKACNCLL----- 353
Query: 386 PSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445
L +NQIG+VTEAIE LA WGV +SHRSGETEDSFIADL VGL GQIK+G+P
Sbjct: 354 ---LKVNQIGSVTEAIEACLLAQKSGWGVQVSHRSGETEDSFIADLVVGLRCGQIKSGSP 410
Query: 446 CRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
CR ERL KYNQL+ IEE LG +YAGE +R
Sbjct: 411 CRSERLCKYNQLMRIEESLGADCVYAGESFRH 442
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A Length = 432 | Back alignment and structure |
|---|
Score = 617 bits (1595), Expect = 0.0
Identities = 221/440 (50%), Positives = 288/440 (65%), Gaps = 25/440 (5%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I K+ R++LDSRG PTVEV++ T KG+FR++VPSG +G+YEA ELRDGDK Y+G
Sbjct: 6 IQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGKGC 65
Query: 107 NRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAA 166
+AVKN+NE I AL+G D + Q ++D M+ LD T KG+LGANAIL S+A KA AA
Sbjct: 66 LQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAA 125
Query: 167 EKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQM 226
K VPLY+++A LAG L LPVP F VI+GGKHAGN L Q+ MI P+ A+SF EAL+M
Sbjct: 126 AKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRM 185
Query: 227 GSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW--S 284
GSE YH L+ +I +KYG NVG++GG AP I I E L ++ EAI G
Sbjct: 186 GSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAICM 245
Query: 285 DCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
DC +S ++ +Y+L FKSP + + E + E Y + DYPIVSIEDP+D++D+
Sbjct: 246 DCAASETYDEKKQQYNLTFKSPEP---TWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDF 302
Query: 344 EH----TKSVLQICQQVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQIG 395
T+++ Q+VGDDL ++N +RI+ A I ++L L INQIG
Sbjct: 303 AGFAGITEALKGKT-QIVGDDLTVTNTERIKMA--IEKKACNSLL--------LKINQIG 351
Query: 396 TVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYN 455
T++EAI KL + W V++SHRSGETED++IADL V L SGQIK GAPCRGER AK N
Sbjct: 352 TISEAIASSKLCMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLN 411
Query: 456 QLLHIEEELGDHAIYAGEDY 475
QLL IEEELG HA + +
Sbjct: 412 QLLRIEEELGAHAKFGFPGW 431
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} Length = 427 | Back alignment and structure |
|---|
Score = 569 bits (1470), Expect = 0.0
Identities = 206/439 (46%), Positives = 281/439 (64%), Gaps = 34/439 (7%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKG-MFRASVPSGDPSGMYEALELRDGDKGTYLGNS 105
I I AR+++DSRG PTVEV++ T A VPSG +G +EALELRD +K + G
Sbjct: 11 IKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEK-RFGGKG 69
Query: 106 VNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGA 165
V AV+N+N I ++G D +Q +ID MI+LD T K LGANAILAVS+A KA A
Sbjct: 70 VLMAVENVNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAAA 129
Query: 166 AEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQ 225
A ++PLYK+ L G + +PVP VI+GGKHAGN+L +Q+ MI+P+GA+S EA++
Sbjct: 130 ATAKIPLYKY---LGGFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGATSISEAVR 186
Query: 226 MGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-- 283
MGSE YH LK VI EKYG + NVG++GG AP + + RE LDL+ E++ + G
Sbjct: 187 MGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGYEDEVVFA 246
Query: 284 SDCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED 342
D +S Y Y ++ K + E++++ YK L +YPIVSIEDPF +ED
Sbjct: 247 LDAAAS--EFYKDGYYYVEGKK--------LTREELLDYYKALVDEYPIVSIEDPFHEED 296
Query: 343 WEHTKSVLQICQ-QVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQIGTV 397
+E + + Q+VGDDL ++N +R+ + I + A+L L +NQIGT+
Sbjct: 297 FEGFAMITKELDIQIVGDDLFVTNVERLRKG--IEMKAANALL--------LKVNQIGTL 346
Query: 398 TEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQL 457
+EA++ +LA +GVV+SHRSGETED+ IADLSV L SGQIK GAP RGER AKYNQL
Sbjct: 347 SEAVDAAQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSGQIKTGAPARGERTAKYNQL 406
Query: 458 LHIEEELGDHAIYAGEDYR 476
+ IE+ELG + YAG ++R
Sbjct: 407 IRIEQELGL-SKYAGRNFR 424
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A Length = 431 | Back alignment and structure |
|---|
Score = 521 bits (1345), Expect = 0.0
Identities = 198/449 (44%), Positives = 264/449 (58%), Gaps = 43/449 (9%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
S I KI R+I+DSRG PTVE ++ G A+ PSG +G EALELRDGDK +LG
Sbjct: 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLG 60
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV +N I++AL+G D Q+ ID+ MIDLD TE K + GANAILAVS+A KA
Sbjct: 61 KGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 164 GAAEKEVPLYKHIADLAGKTN-LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGE 222
AA K +PLY+HIA+L G ++PVP +I+GG+HA NN+ IQ+ MI P+GA + E
Sbjct: 121 AAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKE 180
Query: 223 ALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSS 281
A++MGSE +HHL V+ K VG++GG APN+ S E L ++ EA+ G
Sbjct: 181 AIRMGSEVFHHLAKVLKAK--GMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGK 238
Query: 282 KWS---DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDP 337
+ DC +S Y KY L G + E+ +EL YPIVSIED
Sbjct: 239 DITLAMDCAAS--EFYKDGKYVLA-----GEGNKAFTSEEFTHFLEELTKQYPIVSIEDG 291
Query: 338 FDKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRY 385
D+ DW+ TK + Q+VGDDL ++N K ++ + LI
Sbjct: 292 LDESDWDGFAYQTKVLGDKI-QLVGDDLFVTNTKILKEGIEKGIANSILIKF-------- 342
Query: 386 PSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445
NQIG++TE + +K+A D + VISHRSGETED+ IADL+VG A+GQIK G+
Sbjct: 343 ------NQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSM 396
Query: 446 CRGERLAKYNQLLHIEEELGDHAIYAGED 474
R +R+AKYNQL+ IEE LG+ A Y G
Sbjct: 397 SRSDRVAKYNQLIRIEEALGEKAPYNGRK 425
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A Length = 444 | Back alignment and structure |
|---|
Score = 520 bits (1341), Expect = 0.0
Identities = 183/457 (40%), Positives = 262/457 (57%), Gaps = 45/457 (9%)
Query: 36 SNHMRKAVPSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELR 94
+HM S+IT + AR++LDSRG PT+EV+++T G F R VPSG +G +EA+ELR
Sbjct: 8 HHHM-----SIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELR 62
Query: 95 DGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAIL 154
DGDK Y G +AV N+N I+EA++G D Q ID+AMI LD T KG+LGANAIL
Sbjct: 63 DGDKSRYGGLGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAIL 122
Query: 155 AVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILP 214
VSIA +A A E+PLY ++ K LP P +I+GG H+ +A Q+ MILP
Sbjct: 123 GVSIAVARAAADYLEIPLYSYLGGFNTK---VLPTPMMNIINGGSHSDAPIAFQEFMILP 179
Query: 215 IGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAIN 274
+GA +F EAL+ G+E +H LK ++ + VG++GG AP +G++ + AI
Sbjct: 180 VGAPTFKEALRYGAEIFHALKKILKSR--GLETAVGDEGGFAPRFEGTEDGVETILAAIE 237
Query: 275 RTG-IPSSKWS---DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADY 329
G +P DC SS Y + D+ G ++ + I+ +EL Y
Sbjct: 238 AAGYVPGKDVFLGFDCASS--EFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKY 295
Query: 330 PIVSIEDPFDKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPL 377
PI++IED D+ DW+ T+ + + Q+VGDD ++N + R + LI +
Sbjct: 296 PIITIEDGMDENDWDGWKALTERLGKKV-QLVGDDFFVTNTDYLARGIQEGAANSILIKV 354
Query: 378 AMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLAS 437
NQIGT+TE E +++A + + V+SHRSGETEDS IAD++V +
Sbjct: 355 --------------NQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIADIAVATNA 400
Query: 438 GQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGED 474
GQIK G+ R +R+AKYNQLL IE++LG+ A Y G
Sbjct: 401 GQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLK 437
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} Length = 428 | Back alignment and structure |
|---|
Score = 514 bits (1327), Expect = 0.0
Identities = 181/448 (40%), Positives = 255/448 (56%), Gaps = 47/448 (10%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
+ IT I A +ILDSR PT+EV + + A+VPSG +G EA+ELRD D Y G
Sbjct: 3 ATITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGG 62
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV+N+N I +AL+G DP Q +ID+ MI+LD TE K LGANAIL VS+A A
Sbjct: 63 KGVLQAVENVNGPIRDALLGQDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYA 122
Query: 164 GAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEA 223
A ++PLY+++ G ++PVP +I+GG HA NNL Q+ MI+P+GA +F EA
Sbjct: 123 AANNADLPLYRYLGGDGGP--FSMPVPMMNIINGGAHATNNLDFQEFMIVPVGAPTFAEA 180
Query: 224 LQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSK 282
L+ G+E +H LK + + VG++GG AP++ + +L+ EAI +P
Sbjct: 181 LRYGAEVFHALKKRLVSR--GLMSAVGDEGGFAPDLPNNEAAFELILEAIEDANYVPGKD 238
Query: 283 WS---DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338
D SS +Y +YD + + E+MI+ E YP++SIED
Sbjct: 239 IYLALDAASS--ELYQNGRYDFENNQ--------LTSEEMIDRLTEWTKKYPVISIEDGL 288
Query: 339 DKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRYP 386
+ DW T+ + Q+VGDD+ ++NP +E+ A L+ L
Sbjct: 289 SENDWAGWKLLTERLENKV-QLVGDDIFVTNPDILEKGIKKNIANAILVKL--------- 338
Query: 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPC 446
NQIGT+TE + V LA +GV+ISHRSGETED+ IADL+V + QIK G+ C
Sbjct: 339 -----NQIGTLTETLATVGLAKSNKYGVIISHRSGETEDTTIADLAVATDARQIKTGSLC 393
Query: 447 RGERLAKYNQLLHIEEELGDHAIYAGED 474
R +R+AKYN+LL IE EL D A YAG++
Sbjct: 394 RSDRVAKYNRLLQIERELNDQAPYAGKE 421
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} Length = 449 | Back alignment and structure |
|---|
Score = 515 bits (1328), Expect = 0.0
Identities = 196/448 (43%), Positives = 267/448 (59%), Gaps = 44/448 (9%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
I K+ R+I+DSRG PTVE +++ G+ R + PSG +G +EALELRDGDKG + G
Sbjct: 26 LEIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGG 85
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV+NIN ISE L GMD +D+AMID D T+ K + GANA+LAVSIA KA
Sbjct: 86 KGVTKAVQNINTEISEILSGMDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACAKA 145
Query: 164 GAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEA 223
AA VPLY+ + L LPVP +++GG HA N + +Q+ MI+P+GA SF EA
Sbjct: 146 AAAALGVPLYRFLGGLNAN---RLPVPMMNILNGGAHAANTVDVQEFMIMPVGAESFREA 202
Query: 224 LQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSK 282
L+ +E +H L ++ K +VG++GG AP+++S E ++ + EA+ G P
Sbjct: 203 LRQCTEVFHALAGLLKSK--GLATSVGDEGGFAPDLASDEEAIEYILEAVKLAGYEPGRD 260
Query: 283 WS---DCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338
+ D SS +Y L K + F S E ++ +K LC YPIVSIED
Sbjct: 261 FVLAMDAASSEWKGEKKGEYILP-----KCKRKFASEE-LVAHWKSLCERYPIVSIEDGL 314
Query: 339 DKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRYP 386
D+EDWE T+ + Q+VGDDL ++N +R+ + + LI L
Sbjct: 315 DEEDWEGWQYMTRELGDKI-QLVGDDLFVTNTERLNKGIKERCGNSILIKL--------- 364
Query: 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPC 446
NQIGTV+E +E +K+A+ + V+SHRSGETED+ IADL+V L +GQIK GAP
Sbjct: 365 -----NQIGTVSETLEAIKMAHKAGYTAVVSHRSGETEDTTIADLAVALNTGQIKTGAPS 419
Query: 447 RGERLAKYNQLLHIEEELGDHAIYAGED 474
R ER+AKYNQLL IEEELGD A+Y G
Sbjct: 420 RSERVAKYNQLLRIEEELGDSAVYPGFT 447
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} Length = 417 | Back alignment and structure |
|---|
Score = 498 bits (1284), Expect = e-175
Identities = 179/453 (39%), Positives = 249/453 (54%), Gaps = 55/453 (12%)
Query: 36 SNHMRKAVPSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELR 94
SN M VI ++A ++LDSRG PTV+ ++ G A VPSG +G EALELR
Sbjct: 1 SNAM-----LVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELR 55
Query: 95 DGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAIL 154
D D+ + G V +AV N+NE I++ ++G+D Q+Q+D + +LD T LGANA L
Sbjct: 56 DNDE-RFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNYSNLGANATL 114
Query: 155 AVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILP 214
VS+A +A AA +PLY++ L G LPVP +I+GG HA NN+ Q+ MI+P
Sbjct: 115 GVSMATARAAAAALGMPLYRY---LGGANASILPVPMCNIINGGAHANNNVDFQEFMIMP 171
Query: 215 IGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAIN 274
G +SF EAL+ E Y LK +A H +G++GG APN+++ E +DL+ I
Sbjct: 172 FGFTSFKEALRSVCEIYAILKKELANS--GHSTALGDEGGFAPNLANNTEPIDLLMTCIK 229
Query: 275 RTGIPSSKW--SDCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPI 331
+ G + D S+ + KY ++ K+ S E +IE Y ELCA YPI
Sbjct: 230 KAGYENRVKIALDVAST--EFFKDGKYHMEGKA--------FSSEALIERYVELCAKYPI 279
Query: 332 VSIEDPFDKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAM 379
SIED + D+E T+ + Q +VGDDL ++N + A LI
Sbjct: 280 CSIEDGLAENDFEGWIKLTEKLGNKIQ-LVGDDLFVTNEDILREGIIKKMANAVLIKP-- 336
Query: 380 LFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQ 439
NQIGT+T+ + V+LA + V+SHRSGE+ED+FIAD +V L +GQ
Sbjct: 337 ------------NQIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQ 384
Query: 440 IKAGAPCRGERLAKYNQLLHIEEELGDHAIYAG 472
IK GA RGER AKYN+LL IE E + Y G
Sbjct: 385 IKTGALARGERTAKYNRLLEIEFESDE---YLG 414
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A Length = 413 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 2e-11
Identities = 58/372 (15%), Positives = 111/372 (29%), Gaps = 65/372 (17%)
Query: 109 AVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAI-LAVSIAACKAGAAE 167
+ I + I+ L+G + + + DK G AI ++ A A A
Sbjct: 89 FIPVIEKEIAPKLIGREI---TNFKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKT 145
Query: 168 KEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMG 227
++V + + I D VP F + D MI+ +
Sbjct: 146 RKVTMAEVIRDEYNPGAEINAVPVFAQ-----SGDDRYDNVDKMII-----------KEA 189
Query: 228 SETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCK 287
H L + EK G G + E + +++ I + + D
Sbjct: 190 DVLPHALINNVEEKLGLKG-------------EKLLEYVKWLRDRIIKLRVRE----DYA 232
Query: 288 SSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK 347
H D+ + K+ D I+ E + + IE P D ED +
Sbjct: 233 PIFH------IDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHL-RIEGPMDVEDRQKQM 285
Query: 348 SVL----------QICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTV 397
+ + ++V D+ + + ++ T + + +G V
Sbjct: 286 EAMRDLRAELDGRGVDAELVADEWCNT-VEDVKFFTDNKAGHMV------QIKTPDLGGV 338
Query: 398 TEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQ----IKAGAPCRGERLAK 453
+ + G ET S ++G+A G K G +
Sbjct: 339 NNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIV 398
Query: 454 YNQLLHIEEELG 465
N++ + +G
Sbjct: 399 KNEMNRVLALVG 410
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 3e-08
Identities = 105/657 (15%), Positives = 181/657 (27%), Gaps = 261/657 (39%)
Query: 1 MSVQEYLNKHMLS------------RKIEDAVNAAVRAK-------SPDPVL-------- 33
+Y K +LS + ++D + + + S D V
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 34 -----------FISNHMRKAVPSVITKIKARQILDSRGIPTVEVDLF--THKGMFRA--- 77
F+ +R +++ IK Q P++ ++ ++
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-----QPSMMTRMYIEQRDRLYNDNQV 125
Query: 78 ----SVPSGDP-SGMYEAL-ELRD-------GDKG---TYLGNSVNRAVK-------NI- 113
+V P + +AL ELR G G T++ V + K I
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 114 -----NERISEALVGM--------DPILQSQIDQAM-IDLDKTEKKGEL--------GAN 151
N E ++ M DP S+ D + I L + EL N
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 152 A--ILA-VS----IAA----CK--------------AGAAEKEVPLYKHIADLAGKTNLT 186
+L V A CK + A + L H L +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 187 LPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHG 246
L + +L + + P S E+++ G T+ + K V +K
Sbjct: 306 L----LLKYLDCRP--QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---- 355
Query: 247 CNVGEDGGLAPNISSIREGLDLVKEAINR------------TGIPSSK----WSD----- 285
+ I L++++ A R IP+ W D
Sbjct: 356 ------------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 286 --------CKSSM------------HNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKEL 325
K S+ +IY L+ K E+ +++ +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIY-----LELKVKL---------ENEYALHRSI 449
Query: 326 CADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLL-------MSNPKRIERATLIPLA 378
Y +I FD +D + D + N + ER TL
Sbjct: 450 VDHY---NIPKTFDSDD----LIPPYL------DQYFYSHIGHHLKNIEHPERMTLFR-- 494
Query: 379 MLFFSRYPSNL-WINQIGTVTEAIEVVKLAND-VPWGVVISHRSGETEDSFIADLSVGLA 436
M+F + ++ Q K+ +D W SG ++ L
Sbjct: 495 MVFL-----DFRFLEQ-----------KIRHDSTAWNA-----SGSILNTLQ-QLK--FY 530
Query: 437 SGQIKAGAPCRGERL----------------AKYNQLLHIEEELGDHAIYAGEDYRQ 477
I P + +KY LL I D AI+ E ++Q
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE-EAHKQ 586
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* Length = 413 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 5e-08
Identities = 52/337 (15%), Positives = 93/337 (27%), Gaps = 61/337 (18%)
Query: 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAI-LAVSIAACKAGAAEKEVP 171
+N+ I L G D DK G L A+ +S A A A
Sbjct: 93 LNDHIKPLLEGRDV---DAFLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGRL 149
Query: 172 LYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETY 231
+ + D + +P F ++ D MIL +
Sbjct: 150 KTEVVCDEWQLPCVPEAIPLFGQSGDDRYIA-----VDKMIL-----------KGVDVLP 193
Query: 232 HHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMH 291
H L + EK G G +RE + + + I ++H
Sbjct: 194 HALINNVEEKLGFKG-------------EKLREYVRWLSDRILSLRSSP----RYHPTLH 236
Query: 292 NIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED----WEHTK 347
D+ + + I ++ P+ IE P D +
Sbjct: 237 ------IDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPL-YIEGPVDAGNKPDQIRMLT 289
Query: 348 SVLQICQ------QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAI 401
++ + ++V D+ + + I T + + +G + +
Sbjct: 290 AITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAGSCHMV------QIKTPDLGGIHNIV 342
Query: 402 EVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASG 438
+ V N ETE S + V LA+
Sbjct: 343 DAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAAR 379
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 479 | |||
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 100.0 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 100.0 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 100.0 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 100.0 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 100.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 100.0 | |
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 100.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 100.0 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 100.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 100.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 100.0 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 100.0 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 100.0 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 100.0 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 100.0 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 100.0 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 100.0 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 100.0 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 100.0 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 100.0 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 100.0 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 100.0 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 100.0 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 100.0 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 100.0 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 100.0 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 100.0 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 100.0 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 100.0 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 100.0 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 100.0 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 100.0 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 100.0 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 100.0 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 100.0 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 100.0 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 100.0 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 100.0 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 100.0 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 100.0 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 100.0 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 100.0 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 100.0 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 100.0 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 100.0 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 100.0 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 100.0 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 100.0 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 100.0 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 100.0 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 100.0 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 100.0 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 100.0 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 100.0 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 100.0 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 100.0 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 100.0 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 100.0 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 100.0 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 100.0 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 100.0 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 100.0 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 100.0 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 100.0 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 100.0 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 100.0 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 100.0 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 100.0 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 100.0 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 100.0 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 100.0 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 100.0 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 100.0 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 100.0 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 100.0 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 100.0 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 100.0 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 100.0 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 100.0 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 100.0 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 100.0 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 100.0 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 100.0 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 100.0 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 100.0 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 99.97 | |
| 4gfi_A | 329 | Mandelate racemase/muconate lactonizing enzyme FA | 99.97 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 99.96 | |
| 3caw_A | 330 | O-succinylbenzoate synthase; structural genomics, | 99.95 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 99.86 | |
| 4f9k_A | 95 | CAMP-dependent protein kinase type I-beta regulat | 97.99 | |
| 2kyg_A | 50 | CAMP-dependent protein kinase type II-alpha regul | 97.2 | |
| 3g36_A | 55 | Protein DPY-30 homolog; X-type four-helix bundle, | 97.14 | |
| 2izx_A | 41 | CAMP-dependent protein kinase type II-alpha regula | 97.07 | |
| 2izy_A | 54 | CAMP-dependent protein kinase regulatory subunit I | 96.83 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 95.79 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 91.5 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 90.38 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 88.88 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 85.42 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 84.82 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 84.82 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 82.49 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 82.18 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 81.2 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 80.74 |
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-116 Score=897.59 Aligned_cols=428 Identities=53% Similarity=0.845 Sum_probs=415.6
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
|++|++|.+|+|+||||+|||+|+|+|++|.+|+++|||+|||.+||.++||+++.+|.|+|+.+||++||+.|+|+|+|
T Consensus 1 m~~I~~i~areildSrGnpTvEv~v~~~~G~~ra~vPsGaStG~~Ea~elrD~d~~~y~Gkgv~kAv~~vn~~Iap~Lig 80 (452)
T 3otr_A 1 MVVIKDIVAREILDSRGNPTIEVDVSTEGGVFRAAVPSGASTGIYEALELRDKDPKRYLGKGVLNAVEIVRQEIKPALLG 80 (452)
T ss_dssp CCCCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHTT
T ss_pred CCcceEEEEEEEEcCCCCEEEEEEEEECCccEEEeccccCCCCcceEEeecCCCcccccCccHHHHHHHHHHHHHHHHcC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-hhhccCC-----CCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCC--CcccccceEEee
Q 011677 124 MDPILQSQIDQAMI-DLDKTEK-----KGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKT--NLTLPVPAFTVI 195 (479)
Q Consensus 124 ~d~~~~~~id~~l~-~~~~~~~-----~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~--~~~~Pvp~~~~i 195 (479)
+|+.||++||+.|. ++|||+| ++++|+||+.|||+|+|+|+|+.+|+|||+|||++.+.. ...+|+|++|+|
T Consensus 81 ~d~~dQ~~iD~~m~~~lDgT~n~~~~~ks~lGaNail~vSlAvakAaA~~~~~PLy~yi~~l~g~~~~~~~lPvP~~nvi 160 (452)
T 3otr_A 81 KDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSIACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVI 160 (452)
T ss_dssp CCTTCHHHHHHHHHHTTTCCEETTEECCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSSSEEECEECEEEE
T ss_pred CChHhHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHHHHHHHHHhcCCcHHHHHHHhcCCCCcceecccceEEEe
Confidence 99999999999999 9999999 999999999999999999999999999999999876555 578999999999
Q ss_pred cCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHh
Q 011677 196 SGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINR 275 (479)
Q Consensus 196 ~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~ 275 (479)
|||+|++|++++|||||+|.++.+++|+++++.|+|++||++|+.|||...++|||||||+|++++.+++|++|.+|+++
T Consensus 161 nGG~ha~n~l~~QEfmi~P~ga~sf~ealr~g~evyh~Lk~vl~~k~g~~~t~vgDEGgfap~~~~~~eaL~ll~~Ai~~ 240 (452)
T 3otr_A 161 NGGEHAGNGLALQEFLIAPVGAPNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKA 240 (452)
T ss_dssp ECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCCCCSHHHHHHHHHHHHHH
T ss_pred cCcccCCCCCCcCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred cCCCCCce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 276 TGIPSSKW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 276 ~g~~~~~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+||+ ++| +|||+| ||+.++|+|+++|++|++++++.+|++|++++|.+|+++|||.||||||+++||++|++|++
T Consensus 241 aGy~-~~i~i~lD~Aasefy~~~~g~Y~l~fk~~~~~~~~~~t~~Elid~y~~lle~ypIv~IEDPl~~dD~eg~a~Lt~ 319 (452)
T 3otr_A 241 AGYE-GKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPIISVEDPFDQDDFASFSAFTK 319 (452)
T ss_dssp HTCT-TTSEEEEECCGGGGEETTTTEEETTTTCSSCCGGGEECHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHH
T ss_pred cCCC-ceEEEccccchHhheeccCCeEEeeccCCCCcccccccHHHHHHHHHHHHhhhCceEEecCCChhhHHHHHHHHH
Confidence 9998 665 999999 99877899999999988777778999999999999999999999999999999999999999
Q ss_pred hh---hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHH
Q 011677 352 IC---QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFI 428 (479)
Q Consensus 352 ~~---~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~ 428 (479)
++ +||+|||+++||+++++++++.++||++ +||++|+|||||+++++++|+++|+.||+||+||||+|+++
T Consensus 320 ~lg~~iqIvGDDl~vTn~~~i~~~Ie~~a~n~I------lIKvnQIGgITEalka~~lA~~~G~~vmvshrSGETeD~~i 393 (452)
T 3otr_A 320 DVGEKTQVIGDDILVTNILRIEKALKDKACNCL------LLKVNQIGSVTEAIEACLLAQKSGWGVQVSHRSGETEDSFI 393 (452)
T ss_dssp HHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEE------EECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHH
T ss_pred hhCCCeEEEeCccccCCHHHHHHHHhcCCCCEE------EeeccccccHHHHHHHHHHHHHcCCeEEEeCCCCCCchhHH
Confidence 98 9999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCC
Q 011677 429 ADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQC 478 (479)
Q Consensus 429 ~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 478 (479)
+|||||++++|||+|+|||+||++||||||||||||++.++|+|++||+|
T Consensus 394 AdLaVgl~~gqIKtGap~rsER~aKyNqLlrIeeelg~~a~~~g~~~~~~ 443 (452)
T 3otr_A 394 ADLVVGLRCGQIKSGSPCRSERLCKYNQLMRIEESLGADCVYAGESFRHP 443 (452)
T ss_dssp HHHHHHTTCCEEECCCSCSHHHHHHHHHHHHHHHHHGGGEEECGGGTTSC
T ss_pred HHHHHHcCCCccccCCCcchhHHHHHHHHHHHHHHhCccceecccccCCC
Confidence 99999999999999999999999999999999999999999999999987
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-114 Score=889.19 Aligned_cols=428 Identities=52% Similarity=0.830 Sum_probs=413.5
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
.|.|++|.+|+|+||||+|||+|+|+|++|.+|+++|||+|||.+||.++||+|+.+|.|+|+.+|+++||+.|+|+|+|
T Consensus 5 ~m~I~~i~ar~ildsrGnptvev~v~~~~g~~ra~vPsgaStG~~Ea~elrd~d~~~y~Gkgv~kAv~~vn~~iap~Lig 84 (441)
T 3qtp_A 5 SMSIQKVHAREILDSRGNPTIEVEITTGKGMFRSCVPSGASTGVHEAVELRDGDKKRYGGKGVLKAVENVNTIIGPALLG 84 (441)
T ss_dssp TTBCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCCCCSCCSSSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHTT
T ss_pred CcEEEEEEEEEEECCCCCEEEEEEEEECCCcEEEecccCCCCCcceeEeecCCCcccccCccHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+|+.||++||+.|.++|+|+|++++|+||+.|||+|+|+|+|+.+|+|||+|||++.+.....+|+|++|+||||+|++|
T Consensus 85 ~~~~dQ~~iD~~m~~lDgT~nks~lGaNail~vSlAvakAaA~~~~~PLy~~l~~l~g~~~~~lPvP~~nvinGG~ha~n 164 (441)
T 3qtp_A 85 KNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICRAAAAEKGLPLYKYLAELTGHKEMTMPVPCFNVINGGAHAGN 164 (441)
T ss_dssp CBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCCCBCEEEEEEEECGGGCSS
T ss_pred CChhhHHHHHHHHHhccCCCCccCCCccchhhHHHHHHHHHHHhcCCcHHHHHHhhcCCCCceeccceEeeecCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999976656677999999999999999999
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW 283 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i 283 (479)
++++|||||+|.++.+++|+++++.|+|++||++|+.|||...++|||||||+|++++.+++|++|.+|++++||+ ++|
T Consensus 165 ~l~~QEfmi~P~ga~sf~ealr~~~evyh~Lk~~l~~k~g~~~t~vgdEGgfap~~~~~~eaL~ll~~Ai~~aGy~-~~i 243 (441)
T 3qtp_A 165 ALAMQEFMICPTGATNFHEALRMAAETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAGYT-GKI 243 (441)
T ss_dssp SCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCCCSSHHHHHHHHHHHHHHHTCT-TTC
T ss_pred ccccceeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCcccCCCCCCHHHHHHHHHHHHHHcCCC-ceE
Confidence 9999999999999999999999999999999999999999888999999999999999999999999999999998 665
Q ss_pred ---eecccc-cccccCceeeccCCCC--CCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh--hh
Q 011677 284 ---SDCKSS-MHNIYSTKYDLDFKSP--NKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC--QQ 355 (479)
Q Consensus 284 ---iD~aa~-~~~~~~g~Y~~~~~~~--~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~ 355 (479)
+|||+| ||+.++|+|+++|++| ++|++..+|++|++++|.+++++|||.||||||+++||++|++|++++ +|
T Consensus 244 ~i~lD~Aasefy~~~~g~Y~l~f~~~~~~~~~~~~~t~~elid~y~~lle~ypI~~IEDPl~~dD~eg~a~Lt~~lg~i~ 323 (441)
T 3qtp_A 244 EIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIASIEDPFAEDDWAAWNKFTVEHGNFQ 323 (441)
T ss_dssp EEEEECCGGGGEETTTTEEETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHTTTSE
T ss_pred EEccchhHHHhhhccCCeEEeecCCcccccccccccCHHHHHHHHHHHhhhcceeeecCCCChHHHHHHHHHHHhcCCce
Confidence 999999 9976579999999887 556666889999999999999999999999999999999999999998 99
Q ss_pred hhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhc
Q 011677 356 VVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGL 435 (479)
Q Consensus 356 I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~ 435 (479)
|+|||+++||+++++++++.++||++ +||++|+|||||+++++++|+++|+.+|+||++|||+|++++|||||+
T Consensus 324 IvGDEl~vTn~~~i~~~Ie~~a~n~I------lIKvnqiGGITEalkaa~lA~~~G~~vmvsHrsgETeDt~iAdLAVal 397 (441)
T 3qtp_A 324 IVGDDLLVTNPARVQMAMDKNACNSV------LIKVNQIGTLTETFKTIKMAQEKGWGVMASHRSGETEDTFIADLVVGL 397 (441)
T ss_dssp EEESTTTTTCHHHHHHHHHHTCCSEE------EECGGGTCCHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHHHHHHT
T ss_pred EEeccccccCHHHHHHHHHcCCCCEE------EecccccccHHHHHHHHHHHHHcCCeEEEeCCCCCccHhHHHHHHHHh
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCCC
Q 011677 436 ASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQCL 479 (479)
Q Consensus 436 ~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~~ 479 (479)
+++|||+|+|||+||++||||||||||||+. ++|+|++||+|.
T Consensus 398 ~~gqIKtGap~rseR~aKyNqLlrIeeelg~-a~~~g~~~~~~~ 440 (441)
T 3qtp_A 398 NCKQIKTGAPCRSERLCKYNQLMRIEEELGN-IPYAGKNWRNST 440 (441)
T ss_dssp TCEEEECCCSCSHHHHHHHHHHHHHHHHHSS-CCBCTTCCBCCC
T ss_pred CCCccccCCCcchhHHHHHHHHHHHHHHhCc-CeecccccccCC
Confidence 9999999999999999999999999999998 999999999984
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-99 Score=789.07 Aligned_cols=411 Identities=43% Similarity=0.696 Sum_probs=383.1
Q ss_pred ceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
.+|++|.+|+|+||+|+|||+|+|+|++|++ ++++|||+|||.+||.++||+|+++|.|+++.++++.|++.|+|.|+|
T Consensus 3 ~~i~~~~~r~i~dsrg~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~gkgv~~av~~v~~~iap~LiG 82 (428)
T 3tqp_A 3 ATITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGGKGVLQAVENVNGPIRDALLG 82 (428)
T ss_dssp CCEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCBCC---CCSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHTT
T ss_pred ceEEEEEEEEEEcCCCCCEEEEEEEECCCCEEEEeccccccCCcceeEeecCCCccccccccHHHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+||.+|++||+.|.+++++++++++|.||++|||+||||++||.+|+|||+||||. ..+.++|+|+|++++||.|+++
T Consensus 83 ~d~~~~~~i~~~m~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG~--~~~~~~pvp~~~~inGG~ha~~ 160 (428)
T 3tqp_A 83 QDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYAAANNADLPLYRYLGGD--GGPFSMPVPMMNIINGGAHATN 160 (428)
T ss_dssp CCTTCHHHHHHHHHHHHCCTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHTT--TCCCCBCEEEEEEEECC----C
T ss_pred CCccCHHHHHHHHHHhcCcCCcCccchhHHHHHHHHHHHHHHHHcCCCHHHHhCCC--CCCceeeeEEEEEecCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999972 2245799999999999999999
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-c
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-K 282 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~-~ 282 (479)
++++||||++|.++.+++++++++.++|+++|..|+.| | ..+++|++|+|.|++++++++|+.+.+|++++||+++ +
T Consensus 161 ~~~~qefmi~P~ga~~~~ea~~~~~egy~~lK~~l~~~-g-~~t~vGdegg~ap~~~~~~e~l~~i~~Air~agy~~G~d 238 (428)
T 3tqp_A 161 NLDFQEFMIVPVGAPTFAEALRYGAEVFHALKKRLVSR-G-LMSAVGDEGGFAPDLPNNEAAFELILEAIEDANYVPGKD 238 (428)
T ss_dssp CCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-T-CCCCBCTTSCBCCCCSSHHHHHHHHHHHHHHTTCCBTTT
T ss_pred ccchhHHhhcCcchhhHHHHHHHHHHHHHhHhhhhccc-c-cccccCCCCCcCCCcccHHHHHHHHHHHHHHhhcccCCc
Confidence 99999999999999999999999999999999999877 6 4789999999999998889999999999999998764 4
Q ss_pred e---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---hh
Q 011677 283 W---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---QQ 355 (479)
Q Consensus 283 i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~~ 355 (479)
+ +|+|+| || ++|+|+++ ++.||++|+++++.+++++|||.||||||+++|+++|++|++++ +|
T Consensus 239 v~l~vD~aase~~--~~g~Y~l~--------~~~~t~~eai~~~~~ll~~y~i~~IEdPl~~dD~eg~~~L~~~~~~pI~ 308 (428)
T 3tqp_A 239 IYLALDAASSELY--QNGRYDFE--------NNQLTSEEMIDRLTEWTKKYPVISIEDGLSENDWAGWKLLTERLENKVQ 308 (428)
T ss_dssp BEEEEECCGGGSE--ETTEECCS--------SSCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHHTTTSE
T ss_pred eEEEEecchhhhc--cCCceecc--------ccccCHHHHHHHHHHHHhhcccceEeCCCCcccHHHHHHHHHhcCCCcc
Confidence 4 999999 99 57999985 36899999999998889999999999999999999999999998 56
Q ss_pred hhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhc
Q 011677 356 VVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGL 435 (479)
Q Consensus 356 I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~ 435 (479)
|+|||++++++++++++++.+++|++ +||++|+|||||+++++++|+++|+++|+||++|||+|++++|||||+
T Consensus 309 ivGDel~vt~~~~~~~~i~~~a~d~i------~iKv~~iGGiTealkia~lA~~~G~~~~v~H~sGEted~~iadLaVa~ 382 (428)
T 3tqp_A 309 LVGDDIFVTNPDILEKGIKKNIANAI------LVKLNQIGTLTETLATVGLAKSNKYGVIISHRSGETEDTTIADLAVAT 382 (428)
T ss_dssp EEESTTTTTCHHHHHHHHHTTCCSEE------EECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHT
T ss_pred eeccccccCCHHHHHHHHHhCCCCEE------EecccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHHc
Confidence 78999988999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccc
Q 011677 436 ASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDY 475 (479)
Q Consensus 436 ~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~ 475 (479)
+++|||+|+|+|+||++||||||||||||++.++|+|++.
T Consensus 383 ~~~~ik~G~p~r~er~akyn~llriee~l~~~~~~~~~~~ 422 (428)
T 3tqp_A 383 DARQIKTGSLCRSDRVAKYNRLLQIERELNDQAPYAGKEA 422 (428)
T ss_dssp TCEEEECCCSSSHHHHHHHHHHHHHHHHHTTSSCBCGGGG
T ss_pred CCCcccCCCCcchhHHHHHhHHHHHHHHhCcccEecCccc
Confidence 9999999999999999999999999999999999999753
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-100 Score=794.12 Aligned_cols=414 Identities=45% Similarity=0.727 Sum_probs=390.7
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV 122 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li 122 (479)
.|+|++|++|+|+||+|+|||+|+|+|++|++ ++++|||+|||.+||.++||+++++|.|+++.++++.|++.|+|.|+
T Consensus 25 ~m~I~~i~~r~i~dsrg~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~g~~v~~av~~v~~~iap~Li 104 (449)
T 3uj2_A 25 YLEIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGGKGVTKAVQNINTEISEILS 104 (449)
T ss_dssp TTBEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCBC---CCSSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHT
T ss_pred ceEEEEEEEEEEECCCCCCeEEEEEEECCCCEEEEeccCCCcCcceeEEEeccCCcccccchhHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCC
Q 011677 123 GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAG 202 (479)
Q Consensus 123 G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~ 202 (479)
|+||.+|++||+.|.+++++++++++|.||++|||+||||++||.+|+|||+|||| ..+.++|+|+|++++||.|++
T Consensus 105 G~d~~~~e~i~~~m~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG---~~~~~lpvp~~n~inGG~ha~ 181 (449)
T 3uj2_A 105 GMDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACAKAAAAALGVPLYRFLGG---LNANRLPVPMMNILNGGAHAA 181 (449)
T ss_dssp TSBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHG---GGCCBCCEECEEEEECSTTSS
T ss_pred cCCccCHHHHHHHHHHhcCcCCcchhhHHHHHHHHHHHHHHHHHHhCCCHHHHhCC---CCCCceeeeeEEEecCcccCC
Confidence 99999999999999999999999999999999999999999999999999999998 445789999999999999999
Q ss_pred CcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-
Q 011677 203 NNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS- 281 (479)
Q Consensus 203 ~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~- 281 (479)
+++++||||++|.++.+++++++++.++|+++|..||.| | ..+++|++|+|.|+++++++.|++|++|++++||+++
T Consensus 182 ~~~~~qEfmi~P~ga~~~~ea~~~~~egy~~lK~~lk~~-g-~~t~vGdeggfap~~~~~~e~l~~i~~AIr~agy~~G~ 259 (449)
T 3uj2_A 182 NTVDVQEFMIMPVGAESFREALRQCTEVFHALAGLLKSK-G-LATSVGDEGGFAPDLASDEEAIEYILEAVKLAGYEPGR 259 (449)
T ss_dssp SSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-T-CCCCBCTTSCBCCCCSCHHHHHHHHHHHHHHTTCCBTT
T ss_pred CccchhhhhhCCcccccHHHHHHHHHHHHHHHHHHHhhc-C-CccccCCCCCcCCCccCHHHHHHHHHHHHHHhccccCC
Confidence 999999999999999999999999999999999999877 6 5689999999999998899999999999999998764
Q ss_pred ce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---h
Q 011677 282 KW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---Q 354 (479)
Q Consensus 282 ~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~ 354 (479)
++ +|+|++ ||+.++|+|+++ + .++.||++|+++++++++++|||.||||||+++|+++|++|++++ +
T Consensus 260 dv~l~vD~aase~~~~~~g~Y~l~--~----~~~~~t~~eai~~~~~lle~y~i~~IEdPl~~dD~eg~~~L~~~~~~~i 333 (449)
T 3uj2_A 260 DFVLAMDAASSEWKGEKKGEYILP--K----CKRKFASEELVAHWKSLCERYPIVSIEDGLDEEDWEGWQYMTRELGDKI 333 (449)
T ss_dssp TBEEEEECCGGGCBCSSTTEEECT--T----TCCEEEHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHHTTTS
T ss_pred ceEEEEEcchhhhccccCceeecc--C----cccccCHHHHHHHHHHHHHhcCceEEECCCCcchHHHHHHHHHHhCCCc
Confidence 44 999999 997667999975 2 125789999999998889999999999999999999999999998 7
Q ss_pred hhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhh
Q 011677 355 QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVG 434 (479)
Q Consensus 355 ~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~ 434 (479)
||+|||+++||+++++++++.+++|++ +||++|+|||||+++++++|+++|+++|+||++|||+|++++|||||
T Consensus 334 pI~gDE~~~tn~~~~~~~i~~~a~d~i------~iKv~~iGGiTea~kia~lA~~~Gi~~~v~H~sgET~d~~iadLaVa 407 (449)
T 3uj2_A 334 QLVGDDLFVTNTERLNKGIKERCGNSI------LIKLNQIGTVSETLEAIKMAHKAGYTAVVSHRSGETEDTTIADLAVA 407 (449)
T ss_dssp EEEESTTTTTCHHHHHHHHHTTCCSEE------EECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHH
T ss_pred eEECCcceeCCHHHHHHHHHcCCCCEE------EECccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHH
Confidence 899999988889999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCcc
Q 011677 435 LASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGED 474 (479)
Q Consensus 435 ~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~ 474 (479)
++++|||+|+|+|+||++||||||||||||++.++|+|+.
T Consensus 408 ~~~~~ik~G~~~r~er~akyn~llriee~l~~~~~~~~~~ 447 (449)
T 3uj2_A 408 LNTGQIKTGAPSRSERVAKYNQLLRIEEELGDSAVYPGFT 447 (449)
T ss_dssp TTCCEEECCCSCSHHHHHHHHHHHHHHHHHGGGCBCCGGG
T ss_pred hCCCcccCCCCchhhHHHHHHHHHHHHHHhccccEeCCcc
Confidence 9999999999999999999999999999999999999975
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-99 Score=784.87 Aligned_cols=406 Identities=42% Similarity=0.664 Sum_probs=385.5
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV 122 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li 122 (479)
|++|++|++|+|+||+|+|||+|+|+|++|.+ ++++|||+|||.+||.++||++ ++|.|+++.+++++|++.|+|.|+
T Consensus 4 ~~~i~~i~~r~i~dsrG~ptvev~v~t~~g~~g~a~vpsgastg~~ea~elrd~~-~~y~gkgv~~av~~v~~~iap~Li 82 (417)
T 3qn3_A 4 MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDND-ERFGGKGVLKAVANVNETIADEIL 82 (417)
T ss_dssp CSBEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCCBSSCSSSCBCCCCCS-TGGGGTCCHHHHHHHHTHHHHHHT
T ss_pred CceeeEEEEEEEEcCCCCceEEEEEEECCCCEEEEecCCCCccccceeeeecCCC-ccccCccHHHHHHHHHHHHHHHHC
Confidence 66899999999999999999999999999987 9999999999999999999999 899999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCC
Q 011677 123 GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAG 202 (479)
Q Consensus 123 G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~ 202 (479)
|+||.+|++||+.|.+++++++++++|+||++|||+||||++||.+|+|||+|||| ..+.++|+|++++++||.|++
T Consensus 83 G~d~~~~~~id~~m~~~dgt~~k~~lg~nAi~aVs~Al~da~ak~~g~PLy~lLGG---~~~~~lPv~~~nvinGG~ha~ 159 (417)
T 3qn3_A 83 GLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARAAAAALGMPLYRYLGG---ANASILPVPMCNIINGGAHAN 159 (417)
T ss_dssp TSBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHG---GGCCEECEEEEEEEECGGGSS
T ss_pred CCCccCHHHHHHHHHHhhccCCCCchhhhhHHHHHHHHHHHHHHHhCCcHHHHhCC---CCCcceeeeeeeeecCcccCC
Confidence 99999999999999999999999999999999999999999999999999999998 446799999999999999999
Q ss_pred CcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-
Q 011677 203 NNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS- 281 (479)
Q Consensus 203 ~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~- 281 (479)
+++++||||++|.++.+++++++++.|+|+++|..|+.| |. .+++|++|+|.|+++++++.++.|.+|++++|++|+
T Consensus 160 ~~~~~qe~mi~P~ga~~~~ea~~~G~evy~~lK~~l~~k-g~-~t~vGdegg~ap~~~~~~e~l~~i~~Air~aGy~~dv 237 (417)
T 3qn3_A 160 NNVDFQEFMIMPFGFTSFKEALRSVCEIYAILKKELANS-GH-STALGDEGGFAPNLANNTEPIDLLMTCIKKAGYENRV 237 (417)
T ss_dssp SSCCCSEEEEEECSCSSHHHHHHHHHHHHHHHHHHHHHT-TC-CCCBCTTSCBCCCCSSSSHHHHHHHHHHHHTTCTTTE
T ss_pred CcccHHHHhcCccchHHHHHHHHHhHHHHHHHHHHHHhc-Cc-ccccCCCCCcCCCcCCHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999999999987 64 689999999999998889999999999999998742
Q ss_pred ce-eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---hhh
Q 011677 282 KW-SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---QQV 356 (479)
Q Consensus 282 ~i-iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~~I 356 (479)
.| +|+|++ || ++|+|+++ ++.||++|++++|++++++|||.||||||+++|+++|++|++++ +||
T Consensus 238 ~l~vD~~ase~~--~~g~y~l~--------~~~~t~~eai~~~~~ll~~y~i~~IEdPl~~dD~e~~~~L~~~~g~~ipI 307 (417)
T 3qn3_A 238 KIALDVASTEFF--KDGKYHME--------GKAFSSEALIERYVELCAKYPICSIEDGLAENDFEGWIKLTEKLGNKIQL 307 (417)
T ss_dssp EEEEECCGGGGE--ETTEEEET--------TEEECHHHHHHHHHHHHHHSCEEEEESSSCTTCHHHHHHHHHHHTTTSEE
T ss_pred eEEEECCchhhc--cCCeeecC--------CCccCHHHHHHHHHHHHhhcceeEEecCCCcccHHHHHHHHHhhCCCCce
Confidence 45 999999 99 47999985 25789999999999989999999999999999999999999998 899
Q ss_pred hcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcC
Q 011677 357 VGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLA 436 (479)
Q Consensus 357 ~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~ 436 (479)
+|||+++||+++++++++.+++|++ +||++|+|||||+++++++|+++|+.+|+||++|||+|++++|||||++
T Consensus 308 ~gDE~~~tn~~~~~~~i~~~a~d~i------~iKv~qiGGiTea~kia~lA~~~G~~v~vsh~sgEt~d~~iadlava~~ 381 (417)
T 3qn3_A 308 VGDDLFVTNEDILREGIIKKMANAV------LIKPNQIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALN 381 (417)
T ss_dssp EESTTTTTCHHHHHHHHHHTCCSEE------EECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHHHHHHTT
T ss_pred ecCCcccCCHHHHHHHHHhCCCCEE------EecCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHHhC
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCcc
Q 011677 437 SGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGED 474 (479)
Q Consensus 437 ~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~ 474 (479)
++|||+|+|+|+||++||||||||||||++ |.|.+
T Consensus 382 ~~~ik~G~~~r~er~akyn~llriee~l~~---~~~~~ 416 (417)
T 3qn3_A 382 TGQIKTGALARGERTAKYNRLLEIEFESDE---YLGEK 416 (417)
T ss_dssp CSEEECCCSCSHHHHHHHHHHHHHTTTCCE---ECTTC
T ss_pred CCccccCCCcchhHHHHHHHHHHHHHHhcc---ccccC
Confidence 999999999999999999999999999973 55654
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-97 Score=772.26 Aligned_cols=424 Identities=52% Similarity=0.845 Sum_probs=400.5
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc--C
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV--G 123 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li--G 123 (479)
.|++|++|+|+||+|+|+|+|+|+|++|+.++++|+|+|||.+|+.+++|+++.+|.|+++.++++.|++.|+|.|+ |
T Consensus 1 ~I~~v~~r~i~dsrg~~tv~V~V~t~~G~G~g~~psgastG~~ea~elrd~~~~~~~g~~v~~av~~v~~~iap~Li~~G 80 (436)
T 2al1_A 1 AVSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKAN 80 (436)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHT
T ss_pred CeeEEEEEEEEcCCCCcEEEEEEEECCceEEEeecccccCCcceeeeeccCccccccCccHHHHHHHHHHHHHHHHHHCC
Confidence 48999999999999999999999999993388999999999999999999999999999999999999999999999 9
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCC--CcccccceEEeecCCccC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKT--NLTLPVPAFTVISGGKHA 201 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~--~~~~Pvp~~~~i~GG~~~ 201 (479)
+||.+|++||+.|.+++++.+++++++||++||||||||++||.+|+|||+|||.+.|.. +.++|+|+|++++||.|+
T Consensus 81 ~d~~~~~~i~~~m~~~dgt~~~~~lg~~Ai~aVd~Al~Da~ak~~g~PLy~lLG~l~G~~~~~~~lpvp~~n~inGg~ha 160 (436)
T 2al1_A 81 IDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHA 160 (436)
T ss_dssp CCTTCHHHHHHHHHHHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTCCCTTEEECEEEEEEEECGGGS
T ss_pred CChhhHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCcCceeeEEEEEeecCcccc
Confidence 999999999999999999988899999999999999999999999999999999211144 568999999999999999
Q ss_pred CCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC
Q 011677 202 GNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS 281 (479)
Q Consensus 202 ~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~ 281 (479)
++++++||||++|.++.+++++++++.++|+++|..|+.|+|...+++|++|+|.|+.++++++++.|+++++++|++ +
T Consensus 161 ~~~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~l~~k~G~~a~~vGdegg~~p~~~~~~~~l~~i~~ai~~~G~~-g 239 (436)
T 2al1_A 161 GGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHD-G 239 (436)
T ss_dssp SSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHHHHHHHHHHHHHHHTCT-T
T ss_pred CCccccccceecCcccccHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCccCHHHHHHHHHHHHHHcCCC-c
Confidence 999999999999999999999999999999999999999988766889999999999988999999999999999985 4
Q ss_pred c--e-eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhh
Q 011677 282 K--W-SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQV 356 (479)
Q Consensus 282 ~--i-iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I 356 (479)
+ | +|++++ || ++++|+++|++|+++.++.||++|++++|.+++++|||.||||||+++||++|++|++++ +||
T Consensus 240 ~v~l~vD~aase~~--~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl~~dD~~g~~~l~~~~~ipI 317 (436)
T 2al1_A 240 KVKIGLDCASSEFF--KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGIQI 317 (436)
T ss_dssp TCEEEEECCGGGGE--ETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHTTCCSEE
T ss_pred ceEEEEechhhhhc--cCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCCCCcCHHHHHHHHhcCCCeE
Confidence 4 4 999999 99 578999988776555668899999999999999999999999999999999999999999 999
Q ss_pred hcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcC
Q 011677 357 VGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLA 436 (479)
Q Consensus 357 ~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~ 436 (479)
+|||+++||+++++++++.+++|++ +||++|+|||||+++++++|+++|+.+|+||+++||+|++++|||||++
T Consensus 318 ~gDE~~vt~~~~~~~~i~~~a~d~i------~ikv~qiGGitea~~ia~lA~~~g~~~~~sh~sgEt~~~~iA~lava~~ 391 (436)
T 2al1_A 318 VADDLTVTNPKRIATAIEKKAADAL------LLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLR 391 (436)
T ss_dssp EESTTTTTCHHHHHHHHHTTCCSEE------EECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHTT
T ss_pred EECCcccCCHHHHHHHHHhCCCCEE------EechhhcCCHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHhc
Confidence 9999988899999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCC
Q 011677 437 SGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQC 478 (479)
Q Consensus 437 ~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 478 (479)
++|||+|+|+|+||++||||||||||||++.++|+|++|++|
T Consensus 392 ~~~ik~G~~~r~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 433 (436)
T 2al1_A 392 TGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGENFHHG 433 (436)
T ss_dssp CSEEECCCSCSHHHHHHHHHHHHHHHHHGGGEEECGGGCTTG
T ss_pred CCcCcCCCCccchHHHHHHHHHHHHHHhccccEeCccccCCC
Confidence 999999999999999999999999999999999999999886
|
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-96 Score=768.50 Aligned_cols=423 Identities=58% Similarity=0.952 Sum_probs=400.1
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc--C
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV--G 123 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li--G 123 (479)
+|++|++|+|+||+|+|+|+|+|+|++|+.++++|+|+|||++||.+++|+++.+|.|+++.+++..|++.|+|.|+ |
T Consensus 1 ~I~~v~~r~i~dsrg~~tv~V~V~t~~G~G~~~~psgastG~~Ea~el~d~~~~~~~g~~v~~av~~v~~~iap~Li~~G 80 (439)
T 2akz_A 1 SIEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSG 80 (439)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHC
T ss_pred CeeEEEEEEEEcCCCCceEEEEEEECCCceEeeccCCCceeEEEEeeccCCCccccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999999998788999999999999999999988899999999999999999999999 9
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+||.+|++||+.|.+++++.+++++++||++|||+||||++||.+|+|||+|||.+.|..+.++|+|++++++||.|+++
T Consensus 81 ~d~~~~~~i~~~m~~~dgt~~~~~lg~nAi~aVs~Al~Da~ak~~g~PLy~lLG~~~G~~~~~lpvp~~~~inGg~ha~~ 160 (439)
T 2akz_A 81 LSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGN 160 (439)
T ss_dssp CCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSCCBCEEEEEEEECGGGSSS
T ss_pred CChhhHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCceeEEEEEEEecCcccccc
Confidence 99999999999999999998889999999999999999999999999999999922114456899999999999999999
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCc-
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSK- 282 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~- 282 (479)
++++||||++|.++.+++++++++.++|+++|..|+.|+|...+++|++|+|.|++++++++++.|+++++++|++ ++
T Consensus 161 ~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~lk~k~G~~~~~vGdegg~~p~~~~~~e~l~~i~~ai~~~G~~-g~v 239 (439)
T 2akz_A 161 KLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYT-EKI 239 (439)
T ss_dssp SCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCSCCCHHHHHHHHHHHHHHHTCT-TTC
T ss_pred ccccccceecCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCcccHHHHHHHHHHHHHHcCCc-cce
Confidence 9999999999999999999999999999999999999999777889999999999888999999999999999985 44
Q ss_pred -e-eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhc
Q 011677 283 -W-SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVG 358 (479)
Q Consensus 283 -i-iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~g 358 (479)
| +|++++ || ++++|++++++| .+.++.||++|++++|.+++++|||.||||||+++||++|++|++++ +||+|
T Consensus 240 ~l~vD~a~se~~--~~g~y~l~~~~~-~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~~dD~~g~~~L~~~~~ipI~g 316 (439)
T 2akz_A 240 VIGMDVAASEFY--RDGKYDLDFKSP-TDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVG 316 (439)
T ss_dssp EEEEECCGGGGE--ETTEECTTTTSS-CCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHTCSSEEEE
T ss_pred EEEEechHhhhc--cCCeeEEecccc-ccccccCCHHHHHHHHHHHHHhCCCcEEECCCCcccHHHHHHHHhCCCCEEEe
Confidence 4 999999 98 478999987665 44567899999999999999999999999999999999999999999 99999
Q ss_pred CCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCC
Q 011677 359 DDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASG 438 (479)
Q Consensus 359 de~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~ 438 (479)
||+++||+++++++++.+++|++ +||++|+|||||+++++++|+++|+.+|+||+++||+|++++|||||++++
T Consensus 317 DE~~vt~~~~~~~~i~~~a~d~i------~iKv~qiGGitea~~ia~lA~~~g~~~~~sh~~gEt~~~~iA~lava~~~~ 390 (439)
T 2akz_A 317 DDLTVTNPKRIERAVEEKACNCL------LLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTG 390 (439)
T ss_dssp STTTTTCHHHHHHHHHTTCCSEE------EECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHHTCS
T ss_pred CCCccCCHHHHHHHHHhCCCCEE------EechhhcCCHHHHHHHHHHHHHCCCeEEeecCCCccHHHHHHHHHHHhcCC
Confidence 99988899999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCC
Q 011677 439 QIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQC 478 (479)
Q Consensus 439 ~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 478 (479)
|||+|+|+|+||++||||||||||+|++++.|+|++||+|
T Consensus 391 ~ik~G~~~r~er~~kyn~llriee~l~~~~~~~~~~~~~~ 430 (439)
T 2akz_A 391 QIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNP 430 (439)
T ss_dssp EEECCCSCSHHHHHHHHHHHHHHHHHGGGCCBCGGGTTCG
T ss_pred cccCCCCccchhHHHHHHHHHHHHHhccCcEecCccCCCc
Confidence 9999999999999999999999999999999999999986
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-90 Score=719.44 Aligned_cols=422 Identities=51% Similarity=0.812 Sum_probs=390.4
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV 122 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li 122 (479)
||+|++|++++|++++++|+|+|+|+|++| + ++.+|+++|||.+|+.+++|+++++|.|+++.+++..|++.|+|.|+
T Consensus 3 ~m~I~~i~~~~v~~~~~~p~v~V~v~td~G-~G~ge~~sgastg~~ea~elrd~~~~~~~g~~v~~av~~v~~~iap~Li 81 (432)
T 2ptz_A 3 HMTIQKVHGREVLDSRGNPTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVKNVNEVIGPALI 81 (432)
T ss_dssp TTSCCEEEEEEEECTTSCEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHHHHHHHTHHHHHT
T ss_pred CCEEEEEEEEEEecCCCCcEEEEEEEeCCc-EEEEEEecccccCcceeeeeccCcccccccccHHHHHHHHHHHHHHHHC
Confidence 689999999999999999999999999999 6 88999999999999999999998999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCC
Q 011677 123 GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAG 202 (479)
Q Consensus 123 G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~ 202 (479)
|+||.+|++||+.|.+++++.++++++.||++|||+||||++||.+|+|||+|||.+.|..+.++|+|+|++++||.|++
T Consensus 82 G~d~~~~~~i~~~m~~~~~~~~~~~~~~~Ai~aVd~AlwD~~ak~~g~Ply~lLG~~~G~~~~~~pvp~~~~i~gg~~a~ 161 (432)
T 2ptz_A 82 GRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAG 161 (432)
T ss_dssp TCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTCSCCEECEEEEEEEECSTTSS
T ss_pred CCChhhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhccccCCCCcCCceeEEEEecCccccc
Confidence 99999999999999999998888899999999999999999999999999999992111444579999999999999999
Q ss_pred CcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCC-C
Q 011677 203 NNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPS-S 281 (479)
Q Consensus 203 ~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~-~ 281 (479)
+.+++||+|++|.++.+++++++++.++|+++|..++.|+|...+++|++|+|.|+++++++.++.+.+|++++|++. .
T Consensus 162 ~~~~~qe~mi~p~~~~~~~ea~~~~~eg~~~lK~~l~~k~G~~at~vgdegg~~p~~~~~~~~l~~i~~Air~~G~~g~v 241 (432)
T 2ptz_A 162 NALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKF 241 (432)
T ss_dssp SSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTSSBCCSCCCTTTHHHHHHHHHHHTTCTTSC
T ss_pred CCCCHHHhcccCcccCCHHHHHHHHHHHHHHHHHHhHhhcCCCccccCCccCcCCCcccHHHHHHHHHHHHHHhCCcCCc
Confidence 999999999999999999999999999999999999888887668999999999988878889998788998899841 3
Q ss_pred ce-eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---hhh
Q 011677 282 KW-SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---QQV 356 (479)
Q Consensus 282 ~i-iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~~I 356 (479)
.| +|+|++ ||+..+++|++.++.+ +++.|++++++++|.+++++|||.||||||+++|+++|++|++++ +||
T Consensus 242 ~l~vDan~~~~~~~~~~~y~~~~~~~---~~~~~~a~~~~~~~~~~l~~y~i~~iEdPl~~~D~~g~~~l~~~~g~~ipI 318 (432)
T 2ptz_A 242 AICMDCAASETYDEKKQQYNLTFKSP---EPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGITEALKGKTQI 318 (432)
T ss_dssp EEEEECCGGGGEETTTTEEETTTTSS---SCCEECHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHTTTTSEE
T ss_pred EEEEECcccccccccCceeEeecccc---ccCCCCHHHHHHHHHHHHHhCCceEEECCCCcchHHHHHHHHHhcCCCCeE
Confidence 45 999999 8864458998843211 025689999999999999999999999999999999999999997 899
Q ss_pred hcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcC
Q 011677 357 VGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLA 436 (479)
Q Consensus 357 ~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~ 436 (479)
+|||++++|+++++++++.+++|++ +||++|+|||||+++++++|+++|+++|+||+++||++++++|||||++
T Consensus 319 ~gDe~~v~~~~~~~~~i~~~a~d~i------~ik~~~~GGitea~~i~~lA~~~g~~v~~~h~~get~~~~~a~lava~~ 392 (432)
T 2ptz_A 319 VGDDLTVTNTERIKMAIEKKACNSL------LLKINQIGTISEAIASSKLCMENGWSVMVSHRSGETEDTYIADLVVALG 392 (432)
T ss_dssp EESTTTTTCHHHHHHHHHTTCCSEE------EECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHHT
T ss_pred EecCcccCCHHHHHHHHHcCCCCEE------EecccccCCHHHHHHHHHHHHHcCCeEEecCCCCccHHHHHHHHHHHhC
Confidence 9999888899999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccc
Q 011677 437 SGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDY 475 (479)
Q Consensus 437 ~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~ 475 (479)
++|+|+|+|+|+||++||||||||||+|++.++|+|++|
T Consensus 393 ~~~ik~G~~~r~er~~kyn~llrie~~l~~~~~~~~~~~ 431 (432)
T 2ptz_A 393 SGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFPGW 431 (432)
T ss_dssp CSEEECCSSCSHHHHHHHHHHHHHHHHHCTTCEESCGGG
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHhccCcCccCCCC
Confidence 999999999999999999999999999999999999886
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-84 Score=675.32 Aligned_cols=415 Identities=47% Similarity=0.733 Sum_probs=386.9
Q ss_pred ceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
|+|++|++++|+||+|+++|+|+|+|++|++ ++++|+++++|..|+.+++|+++++|.|+++.+++..|++.|+|.|+|
T Consensus 1 ~~I~~v~~~~v~~srg~~~v~V~v~td~G~~Gge~~p~~~~~G~~ea~e~rd~~~~~y~g~~~~~~~~~i~~~l~p~LiG 80 (431)
T 2fym_A 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIG 80 (431)
T ss_dssp CBEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHTT
T ss_pred CeeEEEEEEEEEcCCCCeeEEEEEEECCCCccceecCcccccCcccceeccCCcccccccccHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999999999987 778999999999999999999989999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcc----cccceEEeecCCc
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLT----LPVPAFTVISGGK 199 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~----~Pvp~~~~i~GG~ 199 (479)
+||.++++||+.|.++++++++++++.+|++|||+||||++||.+|+|||+||||. .+.+ +|+|+|++++||.
T Consensus 81 ~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~---~~~~~~~~~pv~~~~~~~gg~ 157 (431)
T 2fym_A 81 KDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAEL---NGTPGKYSMPVPMMNIINGGE 157 (431)
T ss_dssp SBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH---TTCTTCCCCCEECEEEEECGG
T ss_pred CCHHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHHHHHHHHhCCcHHHHhcCc---ccccccccccceeEeeccCcc
Confidence 99999999999999988888888899999999999999999999999999999984 2334 9999999999999
Q ss_pred cCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCC
Q 011677 200 HAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIP 279 (479)
Q Consensus 200 ~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~ 279 (479)
|+++++++++||++|.++..++++++++.++|+++|..++.| |. ..++|++|+|.|+++++.++|++||++++++|++
T Consensus 158 ~~~~~l~~~~~mi~p~~~~~~~~a~~~~~~g~~~lK~~l~~~-g~-~~kvG~~gg~~~~~~~d~~~l~~vreai~~~g~~ 235 (431)
T 2fym_A 158 HADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAK-GM-NTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYE 235 (431)
T ss_dssp GSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-TC-CCCBCTTSCBCCCCSSHHHHHHHHHHHHHHTTCC
T ss_pred ccccccCcchhcccCccchhHHHHHHHHHHHHHHHHHHHHhc-Cc-ccccCcccCCCCCccchHHHHHHHHHHHHHhccC
Confidence 999999999999999889999999999999999999999876 63 3789999999999998999999999999999998
Q ss_pred CC-c--e-eecccc-cccccCceeeccCCCCCCCCC-CCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh
Q 011677 280 SS-K--W-SDCKSS-MHNIYSTKYDLDFKSPNKSGQ-NFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC 353 (479)
Q Consensus 280 ~~-~--i-iD~aa~-~~~~~~g~Y~~~~~~~~~~~~-~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~ 353 (479)
|+ + | +|+++| ||+ +++|++..+ + +.||.+++++++.++.++|+|.||||||+++|+++|++|++++
T Consensus 236 ~G~dv~l~vDaaas~~~~--~~~Y~~~~~------n~~~~t~~~ai~~~~~L~~~~~i~~iEePl~~~d~~~~~~l~~~~ 307 (431)
T 2fym_A 236 LGKDITLAMDCAASEFYK--DGKYVLAGE------GNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVL 307 (431)
T ss_dssp BTTTBEEEEECCGGGGEE--TTEEEEGGG------TTEEECHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHH
T ss_pred CCCccEEEEeechhhccc--cCceeeccC------CCCCCCHHHHHHHHHHHHHhCCceEEECCCCcccHHHHHHHHHHh
Confidence 63 3 4 999999 994 799998632 3 6799999999988865559999999999999999999999987
Q ss_pred ---hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHH
Q 011677 354 ---QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIAD 430 (479)
Q Consensus 354 ---~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~d 430 (479)
+||++||++++++++++++++.+++|++ +||++|+|||||+++++++|+++|+++|++|+++||++++++|
T Consensus 308 ~~~ipIa~dEl~~~~~~~~~~~i~~~a~d~i------~ik~~~~GGite~~~i~~~A~~~g~~~~~~h~~get~~~~~a~ 381 (431)
T 2fym_A 308 GDKIQLVGDDLFVTNTKILKEGIEKGIANSI------LIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIAD 381 (431)
T ss_dssp TTTSEEEESTTTTTCHHHHHHHHHTTCCSEE------EECGGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHH
T ss_pred CCCCeEEeCCcccCCHHHHHHHHHhCCCCEE------EECccccCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHHHHHH
Confidence 8999999667889999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccC-ccccCC
Q 011677 431 LSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAG-EDYRQC 478 (479)
Q Consensus 431 lAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~-~~~~~~ 478 (479)
||++++++|+|+|+|+|+||++|||||||||++|++++.|.| ++||++
T Consensus 382 la~a~~~~~i~~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~~ 430 (431)
T 2fym_A 382 LAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQ 430 (431)
T ss_dssp HHHHTTCEEEECCCSCSHHHHHHHHHHHHHHHHHGGGSCCCGGGGSTTC
T ss_pred HHHhcCCCccccCCCccchHHHHHHHHHHHHHHhccCceecChhhccCC
Confidence 999999999999999999999999999999999999999999 779876
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-83 Score=672.81 Aligned_cols=421 Identities=43% Similarity=0.708 Sum_probs=383.0
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV 122 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li 122 (479)
|..|++|++|+|+||+|+|+|+|+|+|++|++ ++++|+++++|..|+.+++|+++++|.|+++.+++..|++.|+|.|+
T Consensus 11 ~~~i~~~~~r~i~dsrg~~~v~V~V~td~G~~Gge~~p~~~~tG~~ea~elrd~~~~~~~g~~v~~a~~~i~~~l~p~Li 90 (444)
T 1w6t_A 11 MSIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDNVNNIIAEAII 90 (444)
T ss_dssp TTBEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHT
T ss_pred hhhcceeEEEEEEcCCCCceEEEEEEECCCCEeeEecccccccccceeeeeccCcccccccccHHHHHHHHHHHHHHHHc
Confidence 77899999999999999999999999999988 66789999999999999999999999999999999999989999999
Q ss_pred CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCC
Q 011677 123 GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAG 202 (479)
Q Consensus 123 G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~ 202 (479)
|+||.++++||+.|.+++++.++++++.+|++|||+||||++||.+|+|||+|||| ..+.++|+|++++++||.|++
T Consensus 91 G~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG---~~~~~vp~~~~~~~~gg~~a~ 167 (444)
T 1w6t_A 91 GYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGG---FNTKVLPTPMMNIINGGSHSD 167 (444)
T ss_dssp TSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHC---TTCCEECEECEEEEECGGGCS
T ss_pred CCCHHHHHHHHHHHHHhhCCCccccchhHHHHHHHHHHHHHHHHHcCCcHHHHhCC---CCcccccccccceeccccccc
Confidence 99999999999999988888777888899999999999999999999999999998 345689999999999999999
Q ss_pred CcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-
Q 011677 203 NNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS- 281 (479)
Q Consensus 203 ~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~- 281 (479)
+++++||||++|.+..+++++++++.++|+++|..++.| |. .+++|++|+|.++++++.++|++||++++++||.|+
T Consensus 168 ~~l~~qe~mi~p~~~~~~~~a~~~~~~g~~~lK~~lk~k-g~-~~kvG~~gg~~~~~~~d~~~l~avreav~~agy~pG~ 245 (444)
T 1w6t_A 168 APIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSR-GL-ETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGK 245 (444)
T ss_dssp SSCCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-TC-CCCBCTTSCBCCCCSSHHHHHHHHHHHHHHTTCCBTT
T ss_pred cccchhHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhc-CC-ccccCCCCCCCCchHhHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999989999999999999999999999887 64 378999999999998899999999999999998863
Q ss_pred c--e-eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---h
Q 011677 282 K--W-SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---Q 354 (479)
Q Consensus 282 ~--i-iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~ 354 (479)
+ | +|+|+| ||+.++++|+++ ++.+. ....||++|+++++.+++++|+|.||||||+++|+++|++|++++ +
T Consensus 246 dv~L~vDaaas~~~~~~n~~y~~~-~n~~~-~~~~~t~~eai~~~~~l~~~~~i~~iEePl~~~d~~~~~~l~~~~~~~i 323 (444)
T 1w6t_A 246 DVFLGFDCASSEFYDKERKVYDYT-KFEGE-GAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKV 323 (444)
T ss_dssp TBEEEEECCGGGGBC--CCCEETH-HHHCT-TCCEECHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHHTTTS
T ss_pred CcEEEEEccchhcccccCCceeec-cccCc-ccCCCCHHHHHHHHHHHHHhCCcEEEECCCChhhHHHHHHHHHhhCCCC
Confidence 3 4 999999 996558889862 11000 002389999999998877789999999999999999999999987 8
Q ss_pred hhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhh
Q 011677 355 QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVG 434 (479)
Q Consensus 355 ~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~ 434 (479)
||++||++++++++++++++.+++|++ +||++|+|||||+++++++|+++|+++|+||+++||.+++++|||++
T Consensus 324 pIa~dE~~~~~~~~~~~~i~~~a~d~i------~ik~~~~GGitea~~ia~lA~~~g~~v~~~h~~get~i~~~a~lava 397 (444)
T 1w6t_A 324 QLVGDDFFVTNTDYLARGIQEGAANSI------LIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIADIAVA 397 (444)
T ss_dssp EEEESTTTTTCHHHHHHHHHHTCCSEE------EECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHHHHHH
T ss_pred eEEeCCcccCCHHHHHHHHHcCCCCEE------EEcccccCCHHHHHHHHHHHHHCCCeEEecCCCCCchHHHHHHHHHh
Confidence 999999867889999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccC-ccccC
Q 011677 435 LASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAG-EDYRQ 477 (479)
Q Consensus 435 ~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~-~~~~~ 477 (479)
++++++|+|+|+|+||++||||||||||+|++++.|.| ++|++
T Consensus 398 ~~~~~i~~G~~~r~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 441 (444)
T 1w6t_A 398 TNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLKSFYN 441 (444)
T ss_dssp TTCCEEECCCSSSHHHHHHHHHHHHHHHHHGGGCEECGGGGCTT
T ss_pred cCCCcccCCCCcccccHHHHHHHHHHHHHhccccccCChhhhcc
Confidence 99999999999999999999999999999999999999 77864
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-81 Score=654.57 Aligned_cols=415 Identities=48% Similarity=0.757 Sum_probs=387.7
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV 122 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li 122 (479)
+|+|++|+++.+.+++|+++|+|+|+|++|++ .+++|++++||.+|+.+++|+++ +|.|+++.+++..|++.|+|.|+
T Consensus 8 ~MkI~~i~~~~v~~s~g~~~v~V~v~td~G~~G~G~~~~~~~tg~~ea~~~~d~~~-~~~g~~~~~~~~~i~~~l~p~Li 86 (427)
T 2pa6_A 8 RFEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEK-RFGGKGVLMAVENVNSIIRPEIL 86 (427)
T ss_dssp GGBEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCCCSSCSSSCCCCCCCSS-GGGGTCCHHHHHHHHHTHHHHHT
T ss_pred CCEEEEEEEEEEEcCCCCceEEEEEEECCCCeeeEecccccccCcceeEeecCCcc-ccccccHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999987 77899999999999999999985 99999999999999989999999
Q ss_pred CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCC
Q 011677 123 GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAG 202 (479)
Q Consensus 123 G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~ 202 (479)
|+||.++++||+.|.+++++.++++++.+|++|||+||||+.||.+|+|||+|||| ..+.++|+|++++++||.|++
T Consensus 87 G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~avd~AlwDl~ak~~g~Pl~~lLGg---~~~~~vp~~~~~~~~gg~~~~ 163 (427)
T 2pa6_A 87 GYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAAAATAKIPLYKYLGG---FNSYVMPVPMMNVINGGKHAG 163 (427)
T ss_dssp TCBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHC---SCCCEECEECEEEEECSTTTS
T ss_pred CCCHHHHHHHHHHHHHhhCCCccccchHHHHHHHHHHHHHHHHHHhCCcHHHHhcC---ccccccccchhcccccccccc
Confidence 99999999999999988777766778889999999999999999999999999998 345689999999999999998
Q ss_pred CcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCC-C
Q 011677 203 NNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPS-S 281 (479)
Q Consensus 203 ~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~-~ 281 (479)
+++++||+|+.|.++..++++.++..++|+++|..++.|+|...+++|++|+|.|+++++.++++.||++++.+|+++ .
T Consensus 164 ~~l~~~~~~~~p~~~~~~~~a~~~~~~g~~~lK~~l~~K~G~~~~~vg~~gg~~~~~~~d~~~v~~vreav~~~G~~~~~ 243 (427)
T 2pa6_A 164 NDLDLQEFMIMPVGATSISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGYEDEV 243 (427)
T ss_dssp SSCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSCCBCTTSCBCCSCCSHHHHHHHHHHHHHHHTCTTTC
T ss_pred CCcCHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcCCcCCCccchHHHHHHHHHHHHHhCCCCCc
Confidence 999999999999889999999999999999999999889898778899999999888888999999999998888731 4
Q ss_pred ce-eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhc
Q 011677 282 KW-SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVG 358 (479)
Q Consensus 282 ~i-iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~g 358 (479)
.| +|++++ || +|+.|+++ ++.||++|+++++.+++++|+|.|||||++++|+++|++|++++ +||++
T Consensus 244 ~L~vDa~as~~~--~n~~~~~~--------n~~~~~~~ai~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipIa~ 313 (427)
T 2pa6_A 244 VFALDAAASEFY--KDGYYYVE--------GKKLTREELLDYYKALVDEYPIVSIEDPFHEEDFEGFAMITKELDIQIVG 313 (427)
T ss_dssp EEEEECCGGGGE--ETTEEEET--------TEEECHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHSSSEEEE
T ss_pred EEEEEcchhccc--cCCceeec--------CCCCCHHHHHHHHHHHHhhCCCcEEEcCCChhhHHHHHHHHhhCCCeEEe
Confidence 56 999999 99 48999875 36899999999988789999999999999999999999999999 99999
Q ss_pred CCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCC
Q 011677 359 DDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASG 438 (479)
Q Consensus 359 de~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~ 438 (479)
||++++++++++++++.+++|++ +||++|+||||++++++++|+++|+++|+||+++||.+++++||+++..++
T Consensus 314 dE~~~~~~~~~~~~i~~~a~d~i------~ik~~~~GGitea~~ia~lA~~~g~~~~~~h~~~es~i~~aa~l~~a~~~~ 387 (427)
T 2pa6_A 314 DDLFVTNVERLRKGIEMKAANAL------LLKVNQIGTLSEAVDAAQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSG 387 (427)
T ss_dssp STTTTTCHHHHHHHHHHTCCSEE------EECHHHHCSHHHHHHHHHHHHTTTCEEEEECCSSCCSCCHHHHHHHHTTCS
T ss_pred CccccCCHHHHHHHHHhCCCCEE------EEcccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHHhCCC
Confidence 99878889999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCCC
Q 011677 439 QIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQCL 479 (479)
Q Consensus 439 ~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~~ 479 (479)
++|+|+|+|+||++||||||||||+|++ ++|+|++|++|+
T Consensus 388 ~~~~G~~~~~er~~kyn~llri~~~~~~-~~~~~~~~~~~~ 427 (427)
T 2pa6_A 388 QIKTGAPARGERTAKYNQLIRIEQELGL-SKYAGRNFRCPF 427 (427)
T ss_dssp EEECCSSCSHHHHHHHHHHHHHHHHSSS-CEECGGGCSCCC
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHhcc-cccccccccCCC
Confidence 9999999999999999999999999998 999999898875
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=406.29 Aligned_cols=327 Identities=15% Similarity=0.115 Sum_probs=242.4
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeecc-----CCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRD-----GDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAM 136 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d-----~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l 136 (479)
++++|+|+|++|++ |+||+.++.. .+ +.|.+++ ....+++.++|.|+|+|+.+++++|+.|
T Consensus 51 ~~v~V~v~td~G~~----------G~GE~~~~~~sGa~~r~-~~~~~~~---~~~~i~~~l~p~LiG~d~~~~~~i~~~l 116 (413)
T 1kko_A 51 ECVSVQLILENGAV----------AVGDCAAVQYSGAGGRD-PLFLAEH---FIPFLNDHIKPLLEGRDVDAFLPNARFF 116 (413)
T ss_dssp EEEEEEEEETTSCE----------EEEEECCCTTTTSTTCC-CCCCHHH---HHHHHHHHTHHHHTTCBCSCSHHHHHHH
T ss_pred ceEEEEEEECCCCE----------EEEEecccccccccccC-ccccHHH---HHHHHHHHHHHHHcCCChHhHHHHHHHH
Confidence 57999999999985 7777765300 01 3455544 4445677799999999999999999999
Q ss_pred HhhhccCCCCc-hhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccC
Q 011677 137 IDLDKTEKKGE-LGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPI 215 (479)
Q Consensus 137 ~~~~~~~~~~~-~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~ 215 (479)
.... ++++ ...+|++|||+||||+.||..|+|||++|||.....-.+.|+|+|++ ||.|..+
T Consensus 117 ~~~~---~~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~l~~~~vp~y~~--~g~~~~~------------ 179 (413)
T 1kko_A 117 DKLR---IDGNLLHTAVRYGLSQALLDATALASGRLKTEVVCDEWQLPCVPEAIPLFGQ--SGDDRYI------------ 179 (413)
T ss_dssp HHCE---ETTEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTTCCCCCCCCCEECC--CTTCTTH------------
T ss_pred Hhhh---cccCccHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCccccccccCCeEEEEe--cCccccC------------
Confidence 7542 1222 34789999999999999999999999999983211001347888874 4443311
Q ss_pred CCCcHHHHHHHH----HHH-HHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHH----HHHHHHHHHHhcCCCCCce-ee
Q 011677 216 GASSFGEALQMG----SET-YHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIRE----GLDLVKEAINRTGIPSSKW-SD 285 (479)
Q Consensus 216 ~~~~~~ea~~~~----~e~-~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~----~l~~v~~ai~~~g~~~~~i-iD 285 (479)
+.++.++.+ .++ |+.+| .|.| . +.+.+.+ .++.|+...+.+|++ ..+ +|
T Consensus 180 ---~~~~~~~~~~~~~~~G~~~~iK----~KvG-------~------~~~~~~~~l~~d~~~v~aiR~~~G~~-~~L~vD 238 (413)
T 1kko_A 180 ---AVDKMILKGVDVLPHALINNVE----EKLG-------F------KGEKLREYVRWLSDRILSLRSSPRYH-PTLHID 238 (413)
T ss_dssp ---HHHHHHHTTCSEEEETTCCCCC----CCCC-------T------TSHHHHHHHHHHHHHHHHHCSSTTCC-CEEEEE
T ss_pred ---CHHHHHHHHHHHHhCCCccEEE----EecC-------C------ChhhHHHHHHHHHHHHHHHHHhhCCC-CeEEEE
Confidence 122222111 112 43333 3422 1 1111222 123342222345765 566 99
Q ss_pred cccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhC--Cce-eeecCCC----ccCHHHHHHHHhh-----h
Q 011677 286 CKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADY--PIV-SIEDPFD----KEDWEHTKSVLQI-----C 353 (479)
Q Consensus 286 ~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~--~i~-~iEdP~~----~~D~~g~~~L~~~-----~ 353 (479)
+|+ +|.+. ..||.+++++++.+ ++++ ++. |||||++ ++|+++|++|+++ +
T Consensus 239 an~--------~~~~~---------~~~~~~~A~~~~~~-L~~~~~~~~l~iEqP~~~~~~~~d~~~~~~l~~~l~~~g~ 300 (413)
T 1kko_A 239 VYG--------TIGLI---------FDMDPVRCAEYIAS-LEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGS 300 (413)
T ss_dssp CTT--------HHHHH---------TTTCHHHHHHHHHH-TGGGGTTSCEEEECCCCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC--------ccccc---------cCCCHHHHHHHHHH-HHhccCCcceEEECCcCCCCCcccHHHHHHHHHhcccCCC
Confidence 953 33332 15799999998766 5663 332 9999999 8899999999999 8
Q ss_pred -hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHH
Q 011677 354 -QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIAD 430 (479)
Q Consensus 354 -~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~d 430 (479)
+||++||+ ++++++++++++.+++|++ +||++++||||++++++++|+++|+++|++|+++||.+ ++++|
T Consensus 301 ~ipIa~dE~-~~~~~~~~~~i~~~a~d~i------~ik~~~~GGitea~~i~~~A~~~gi~~~~~~~~~et~i~~aa~~h 373 (413)
T 1kko_A 301 GVKIVADEW-CNTYQDIVDFTDAGSCHMV------QIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVH 373 (413)
T ss_dssp CCEEEECTT-CCSHHHHHHHHHTTCCSEE------EECGGGGSSTHHHHHHHHHHHHHTCEEEECCCTTSCHHHHHHHHH
T ss_pred CCcEEcCCC-CCCHHHHHHHHHhCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCeEEecCCCCCCHHHHHHHHH
Confidence 99999995 5679999999999999999 99999999999999999999999999999888889988 78999
Q ss_pred hHhhcCCCCc--ccCCCCchhHHHHhHHHHHHHHHhC
Q 011677 431 LSVGLASGQI--KAGAPCRGERLAKYNQLLHIEEELG 465 (479)
Q Consensus 431 lAv~~~~~~i--k~G~~~~~er~~kyn~ll~ie~~l~ 465 (479)
||+++++.++ |+|.+.+.+|++|||||+|||++++
T Consensus 374 laaa~~~~~ip~kpG~g~~~~~~~~~n~l~r~~~~~~ 410 (413)
T 1kko_A 374 VALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALLQ 410 (413)
T ss_dssp HHHHHCCSEEECCSCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCcccCCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999999999999999875
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-48 Score=400.70 Aligned_cols=331 Identities=15% Similarity=0.155 Sum_probs=243.7
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCcccc----ccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLG----NSVNRAVKNINERISEALVGMDPILQSQIDQAMI 137 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g----~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~ 137 (479)
++++|+|+|++|++ |+||+.++.. +.|++ ++..+++..|++.++|.|+|+||.+++.+|+.|.
T Consensus 51 ~~v~V~v~td~G~~----------G~GE~~~~~~---~g~g~~e~~~~~~~~~~~i~~~l~p~L~G~d~~~~~~i~~~l~ 117 (413)
T 1kcz_A 51 ESISVLLVLEDGQV----------AHGDCAAVQY---SGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEEFD 117 (413)
T ss_dssp CEEEEEEEETTSCE----------EEEEECCCTT---TTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHH
T ss_pred cEEEEEEEECCCCE----------EEEEEccccc---cccCcccccccHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHH
Confidence 57999999999984 8888765421 00211 2456777788888999999999999999999995
Q ss_pred hhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCC
Q 011677 138 DLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGA 217 (479)
Q Consensus 138 ~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~ 217 (479)
.... ..++++.+|++|||+||||+.||..|+|||++|||.......+.|+|+|+.. |+.. .. ..+
T Consensus 118 ~~~~--~g~~~~~~a~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~~~~~~vp~~~~~-g~~~----~~--------~~~ 182 (413)
T 1kcz_A 118 KMTV--NGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQS-GDDR----YD--------NVD 182 (413)
T ss_dssp HCEE--TTEECCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHSTTCCCCCCCEECCC-TTCT----TH--------HHH
T ss_pred hccc--CCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhcccccCcCccCCeeeeEec-Cccc----cC--------CHH
Confidence 4321 1123567899999999999999999999999999832111124577777632 2100 00 001
Q ss_pred CcHHHHHHHHHHH-HHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHH----HHHHHHHHHHhcCCCCCce-eecccc--
Q 011677 218 SSFGEALQMGSET-YHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIRE----GLDLVKEAINRTGIPSSKW-SDCKSS-- 289 (479)
Q Consensus 218 ~~~~ea~~~~~e~-~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~----~l~~v~~ai~~~g~~~~~i-iD~aa~-- 289 (479)
..++++.+...++ |+.+| .|.| .++ ....+ .++.|+...+.+|++ ..+ +|+|++
T Consensus 183 ~~~~~a~~~~~~G~~~~~K----iKvG-------~~~------~~~~~~~~~d~~~v~avR~~~G~~-~~l~vDaN~~~~ 244 (413)
T 1kcz_A 183 KMIIKEADVLPHALINNVE----EKLG-------LKG------EKLLEYVKWLRDRIIKLRVREDYA-PIFHIDVYGTIG 244 (413)
T ss_dssp HHHHTTCSEEEECCCCCCC----CCCC-------TTS------HHHHHHHHHHHHHHHHHCSSTTCC-CEEEEECTTHHH
T ss_pred HHHHHHHHHHHhcchhhee----eccC-------CCc------cchhhHHHHHHHHHHHHHHhcCCC-ceEEEecCCCcc
Confidence 1222333333334 54444 2322 110 01122 345553333445765 566 999542
Q ss_pred -cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhC--Cce-eeecCCC----ccCHHHHHHHHhh-----h-hh
Q 011677 290 -MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADY--PIV-SIEDPFD----KEDWEHTKSVLQI-----C-QQ 355 (479)
Q Consensus 290 -~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~--~i~-~iEdP~~----~~D~~g~~~L~~~-----~-~~ 355 (479)
|| .||.+++++++.+ ++++ +|. |||||++ ++|+++|++|+++ + +|
T Consensus 245 ~~~--------------------~~~~~~a~~~~~~-L~~~~~~i~~~iEqP~~~~~~~~d~~~~~~l~~~l~~~g~~ip 303 (413)
T 1kcz_A 245 AAF--------------------DVDIKAMADYIQT-LAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAE 303 (413)
T ss_dssp HHT--------------------TTCHHHHHHHHHH-HHHHHTTSCEEEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred ccc--------------------CCCHHHHHHHHHH-HHhhcCCcceEEecCCCCCCCcccHHHHHHHHHhhhcCCCCCc
Confidence 11 1689999998766 6777 766 9999995 6699999999999 8 99
Q ss_pred hhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHH--HhHh
Q 011677 356 VVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIA--DLSV 433 (479)
Q Consensus 356 I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~--dlAv 433 (479)
|++||+ ++++++++++++.+++|++ +||++++||||++++++++|+++|++++++|++.||.+++.+ |||+
T Consensus 304 Ia~dE~-~~~~~~~~~~i~~~a~d~v------~ik~~~~GGit~a~~i~~~A~~~gi~~~~~~~~~es~i~~~a~~hlaa 376 (413)
T 1kcz_A 304 LVADEW-CNTVEDVKFFTDNKAGHMV------QIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGM 376 (413)
T ss_dssp EEECTT-CCSHHHHHHHHHTTCSSEE------EECTGGGSSTHHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHH
T ss_pred EEeCCC-cCCHHHHHHHHHhCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEEEecCCCCCCHHHHHHHHHHHh
Confidence 999997 5679999999999999999 999999999999999999999999999888878899887665 9999
Q ss_pred hcCCCCccc--CCCCchhHHHHhHHHHHHHHHhCC
Q 011677 434 GLASGQIKA--GAPCRGERLAKYNQLLHIEEELGD 466 (479)
Q Consensus 434 ~~~~~~ik~--G~~~~~er~~kyn~ll~ie~~l~~ 466 (479)
++++.+++. |.+++++|+.|||||+|||++|+.
T Consensus 377 a~~~~~i~~~pG~~~~~g~~~~~n~~~r~~~~~~~ 411 (413)
T 1kcz_A 377 ACGARQVLAKPGMGVDEGMMIVKNEMNRVLALVGR 411 (413)
T ss_dssp HHTCSEEECCSSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCceeecCCCCCCcchhhhHHHHHHHHHHHhc
Confidence 999999988 999999999999999999999864
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=390.25 Aligned_cols=319 Identities=14% Similarity=0.106 Sum_probs=249.2
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
.|+|++|+++.+. +. .++++|+|+|++| + |+||+ .. +.+..+++..+++ ++|.|+|
T Consensus 5 ~MkI~~i~~~~~~-~~-~~~v~V~v~td~G-~----------G~Ge~-~~---------g~~~~~~~~~i~~-l~p~liG 60 (410)
T 2qq6_A 5 APRITRVETAAIR-AV-GPSVLVRVWAGDE-H----------GLGEC-YP---------SAPAAGIHHIVMN-MEEQLLG 60 (410)
T ss_dssp CCCCCEEEEEEEC-CC--CEEEEEEEETTE-E----------EEEEE-CC---------CSCHHHHHHHHHT-THHHHTT
T ss_pred CceEeEEEEEEEC-CC-CCEEEEEEEECCc-E----------EEEEe-cC---------CCChHHHHHHHHH-HHHHhCC
Confidence 3699999999997 54 4689999999999 7 99998 31 2246777778887 9999999
Q ss_pred CCCCCHHHHHHHHHhhh-ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeec-C-Ccc
Q 011677 124 MDPILQSQIDQAMIDLD-KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVIS-G-GKH 200 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~-~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~-G-G~~ 200 (479)
+||.+++++|+.|.+.. ++.++++++.+|++|||+||||+.||.+|+|||+|||| .. +.++|+|++++ | +.|
T Consensus 61 ~d~~~~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg---~~--~~~vp~y~~~~~g~~~h 135 (410)
T 2qq6_A 61 EDPRDVERLYEKMRRWNIFTGGQAGAVITALSGIETALWDLAGKLQGVPVYRLLGG---AF--RRRVRLYADCNAGTVDA 135 (410)
T ss_dssp CCTTCHHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTC---CS--CSEEEEEEECCCSEECT
T ss_pred CCccHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCC---Cc--cCceeEEEecccccccc
Confidence 99999999999998754 33355667889999999999999999999999999998 22 44677788776 5 678
Q ss_pred CCCcc-cccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhh----CCCCcccCCCCCCCC--CCCchHHHHHHHHHHH
Q 011677 201 AGNNL-AIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKY----GAHGCNVGEDGGLAP--NISSIREGLDLVKEAI 273 (479)
Q Consensus 201 ~~~~l-~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~----G~~~~~vg~~G~~~~--~~~~~~~~l~~v~~ai 273 (479)
+++.+ ++|++++.| +...+++.+...++|+.+| .|. |..... ++|++.+ .++.+.+.++.||+++
T Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~a~~~~~~Gf~~vK----ik~~~~~G~~~~~--~~G~~~~~~~~~~~~e~v~avRea~ 207 (410)
T 2qq6_A 136 AAHHIEGGLFEEGSN--EEYIAVAREAVERGFDAIK----LDVDDITGPLHRD--FWNGAISPREHEAMVARVAAVREAV 207 (410)
T ss_dssp TCCEEECCTTCSTHH--HHHHHHHHHHHHTTCSEEE----EECCCSSSTTCSC--SSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCH--HHHHHHHHHHHHcCCCEEE----eeccccCCcccCC--cCccccchhhHHHHHHHHHHHHHhc
Confidence 87765 577777654 3455666666667777766 343 321111 3456543 2233456666666665
Q ss_pred HhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhh
Q 011677 274 NRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQI 352 (479)
Q Consensus 274 ~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~ 352 (479)
|.+ ..| +|++ +.||.+++++++ +.+++|+|.|||||++++|+++|++|+++
T Consensus 208 ---G~d-~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~ 259 (410)
T 2qq6_A 208 ---GPE-VEVAIDMH-----------------------GRFDIPSSIRFA-RAMEPFGLLWLEEPTPPENLDALAEVRRS 259 (410)
T ss_dssp ---CSS-SEEEEECT-----------------------TCCCHHHHHHHH-HHHGGGCCSEEECCSCTTCHHHHHHHHTT
T ss_pred ---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHhhcCCCeEECCCChhhHHHHHHHHhh
Confidence 654 456 8883 256889999886 45899999999999999999999999999
Q ss_pred h-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHH
Q 011677 353 C-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIA 429 (479)
Q Consensus 353 ~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~~ 429 (479)
+ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|+++++ |++. +..+ +.+
T Consensus 260 ~~iPIa~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~~GGite~~~ia~~A~~~g~~~~~-h~~~-s~i~~aa~~ 330 (410)
T 2qq6_A 260 TSTPICAGENVY-TRFDFRELFAKRAVDYV------MPDVAKCGGLAEAKRIANLAELDYIPFAP-HNVS-SPVGTVAAA 330 (410)
T ss_dssp CSSCEEECTTCC-SHHHHHHHHHTTCCSEE------CCBHHHHTHHHHHHHHHHHHHTTTCCBCC-BCCS-CHHHHHHHH
T ss_pred CCCCEEeCCCcC-CHHHHHHHHHcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCeEee-cCCC-cHHHHHHHH
Confidence 9 9999999865 69999999999999999 99999999999999999999999999866 6554 5544 556
Q ss_pred HhHhhcC
Q 011677 430 DLSVGLA 436 (479)
Q Consensus 430 dlAv~~~ 436 (479)
|||.++.
T Consensus 331 hlaaa~~ 337 (410)
T 2qq6_A 331 HVCAAVS 337 (410)
T ss_dssp HHHHSCT
T ss_pred HHHHhCC
Confidence 7766653
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=380.73 Aligned_cols=315 Identities=18% Similarity=0.171 Sum_probs=241.8
Q ss_pred ceeeEEEEEEEecCCCCc--eEEEEEEeCCCceeeecCCCCCCCceee-eeeccCCCCccccccHHHHHHHHHHHHHHhh
Q 011677 45 SVITKIKARQILDSRGIP--TVEVDLFTHKGMFRASVPSGDPSGMYEA-LELRDGDKGTYLGNSVNRAVKNINERISEAL 121 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~~--~v~V~v~t~~G~~~~~~ps~~~~G~~Ea-~~~~d~~~~~y~g~~~~~av~~i~~~l~p~L 121 (479)
|+|++|+++.+.++.+++ +++|+|+|++|++ |+||+ ... +.+...+...+++ ++|.|
T Consensus 3 MkI~~i~~~~~~~~~~~~~~~v~V~v~td~G~~----------G~Ge~~~~~---------g~~~~~~~~~i~~-l~p~l 62 (403)
T 2ox4_A 3 LKITKIEIFHVHTRPQSGQRPILVKVSTDEGIY----------GLGEAGIAY---------GVGGSAAAGILKD-YAALL 62 (403)
T ss_dssp CCEEEEEEEEECCCTTTCCCCEEEEEEETTSCE----------EEEEESCSS---------SSCHHHHHHHHHH-HHHHH
T ss_pred CeEEEEEEEEecCCCCCCccceEEEEEeCCCCE----------EEEeecCCC---------CCchHHHHHHHHH-HHHHc
Confidence 799999999998776565 6799999999984 99997 431 2234455666776 99999
Q ss_pred cCCCCCCHHHHHHHHHhhh-ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEe-ec-C-
Q 011677 122 VGMDPILQSQIDQAMIDLD-KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTV-IS-G- 197 (479)
Q Consensus 122 iG~d~~~~~~id~~l~~~~-~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~-i~-G- 197 (479)
+|+||.+++++|+.|.+.. ++.++++++.+|++|||+||||+.||.+|+|||+|||| .. +-++|+|++ ++ |
T Consensus 63 ~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg---~~--~~~vp~y~~~i~~g~ 137 (403)
T 2ox4_A 63 IGEDPFNTEAIWEKLFKKTFWGQGGGTVIFSGISAFDIAFWDIKGKALNLPVYKLLGG---KN--REDLRVYASQLQFGW 137 (403)
T ss_dssp TTCCTTCHHHHHHHHHHSSSGGGTCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CS--SSSEEEEEECGGGCS
T ss_pred CCCCHHHHHHHHHHHHHhcccccCCcHHHHhHHHHHHHHHHHHhHhHcCCcHHHHcCC---CC--CCceeeeEeeccCCc
Confidence 9999999999999998644 22345667789999999999999999999999999998 32 335777887 66 5
Q ss_pred CccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhh------CCCCcccCCCCCCCC--CCCchHHHHHHH
Q 011677 198 GKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKY------GAHGCNVGEDGGLAP--NISSIREGLDLV 269 (479)
Q Consensus 198 G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~------G~~~~~vg~~G~~~~--~~~~~~~~l~~v 269 (479)
+.|+++.++++++ .+++.+...++|+.+| .|. |.. -.+..|++.+ +.+.+.+.++.|
T Consensus 138 ~~~~~~~~~~e~~---------~~~a~~~~~~Gf~~vK----ik~~~~~~~G~~--~~s~~~g~~~~~~~~~~~e~v~av 202 (403)
T 2ox4_A 138 GKERKSKGRKEEY---------AEEALKAVAEGYDAVK----VDVLAHDRNGSR--EGVFLEGPLPSETIKIGVERVEAI 202 (403)
T ss_dssp SSSCCCCCSHHHH---------HHHHHHHHHTTCSEEE----ECCSSSCTTSCC--TTCCCSSSCCHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHH---------HHHHHHHHHcCCCEEE----EeccccCCcccc--ccCcccCCCchHHHHHHHHHHHHH
Confidence 6777776665543 4566666667777776 332 211 0112233322 112234555555
Q ss_pred HHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHH
Q 011677 270 KEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 270 ~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~ 348 (479)
|+++ |.+ ..| +|++ +.||.++++++++ .+++|+|.|||||++++|+++|++
T Consensus 203 r~av---G~d-~~l~vDan-----------------------~~~~~~~ai~~~~-~l~~~~i~~iE~P~~~~d~~~~~~ 254 (403)
T 2ox4_A 203 RNAV---GPD-VDIIVENH-----------------------GHTDLVSAIQFAK-AIEEFNIFFYEEINTPLNPRLLKE 254 (403)
T ss_dssp HHHH---CTT-SEEEEECT-----------------------TCSCHHHHHHHHH-HHGGGCEEEEECCSCTTSTHHHHH
T ss_pred HHHh---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HHHhhCCCEEeCCCChhhHHHHHH
Confidence 5555 654 456 8883 3578899998865 589999999999999999999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh-
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS- 426 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~- 426 (479)
|++++ +||++||+..+ +++++++++.+++|+| ++|++++||||++++++++|+++|+++++ |++. +..+
T Consensus 255 l~~~~~iPIa~dE~~~~-~~~~~~~i~~~~~d~v------~ik~~~~GGite~~~i~~~A~~~g~~~~~-h~~~-s~i~~ 325 (403)
T 2ox4_A 255 AKKKIDIPLASGERIYS-RWGFLPFLEDRSIDVI------QPDLGTCGGFTEFKKIADMAHIFEVTVQA-HVAG-TGVAE 325 (403)
T ss_dssp HHHTCCSCEEECTTCCH-HHHHHHHHHTTCCSEE------CCCHHHHTHHHHHHHHHHHHHHTTCEECC-CCCS-CHHHH
T ss_pred HHHhCCCCEEecCCcCC-HHHHHHHHHcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCEEee-cCCC-CHHHH
Confidence 99999 99999998765 9999999999999999 99999999999999999999999999876 6554 6544
Q ss_pred -HHHHhHhhcC
Q 011677 427 -FIADLSVGLA 436 (479)
Q Consensus 427 -~~~dlAv~~~ 436 (479)
+.+|||.++.
T Consensus 326 aa~~hlaaa~~ 336 (403)
T 2ox4_A 326 AASLHAEIAIP 336 (403)
T ss_dssp HHHHHHHHTCS
T ss_pred HHHHHHHHhCC
Confidence 4566666653
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=382.74 Aligned_cols=320 Identities=17% Similarity=0.234 Sum_probs=233.4
Q ss_pred HhhhcCCceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHH
Q 011677 38 HMRKAVPSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERI 117 (479)
Q Consensus 38 ~~~~~~~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l 117 (479)
||.+-.+++|++|+++.+...+ ...|+|+|+|++|+ +|+||+.. .+.+ ..+...|++.|
T Consensus 19 yfqsm~~~~It~v~~~~v~~~~-~~~vlV~v~Td~G~----------~G~GEa~~-------~~~~---~~~~~~i~~~l 77 (421)
T 4hnl_A 19 YFQSMTPTIITDVKSFAIKPDR-HNLVVVKVETNKGI----------SGLGCSTF-------QFRP---LAVKTVVDEYL 77 (421)
T ss_dssp --CCCCCCBEEEEEEEEECSSS-SCEEEEEEEETTSC----------CEEEECCC-------TTSH---HHHHHHHHHTH
T ss_pred eecccCCceEEEEEEEEECCCC-ceEEEEEEEECCCC----------EEEEeccC-------CCCH---HHHHHHHHHHH
Confidence 6665334589999999997654 45689999999999 59999753 2333 34455678889
Q ss_pred HHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecC
Q 011677 118 SEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISG 197 (479)
Q Consensus 118 ~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~G 197 (479)
+|.|+|+||.++++||+.|... ...+.+.+..+|++|||+||||+.||.+|+|||+|||| ..+.++ |+|+...+
T Consensus 78 ap~LiG~dp~~ie~i~~~~~~~-~~~~~~~~~~~A~said~ALwDl~gK~~g~Pl~~LLGG---~~r~~v--~~y~~~~~ 151 (421)
T 4hnl_A 78 RPLLMGRDANEIEDIWQVMNVN-SYWRNGPITNNAISGIDMALWDIKGQLADMPLYQLLGG---KARTAI--PAYTHAVA 151 (421)
T ss_dssp HHHHTTCBTTCHHHHHHHHHHT-TSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSSSCE--EEEEEEEE
T ss_pred HHHHCCCChhhHHHHHHHHHhh-ccccCCchHHHHHHHHHHHHHHHHHHHhCCCHHHhcCC---ccCccc--ceecccCC
Confidence 9999999999999999999653 33444567789999999999999999999999999998 444454 45665332
Q ss_pred CccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcc----cCCCCCCCC----CCCchHHHHHHH
Q 011677 198 GKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCN----VGEDGGLAP----NISSIREGLDLV 269 (479)
Q Consensus 198 G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~----vg~~G~~~~----~~~~~~~~l~~v 269 (479)
+ +. +...+++.+...++|+++| .|.|..... ...+..+.. ..+..++.++.+
T Consensus 152 ~-------~~---------~~~~~~a~~~~~~G~~~~K----~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v 211 (421)
T 4hnl_A 152 D-------NL---------DDLYHEIDRFLAAGYRYIR----CQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMF 211 (421)
T ss_dssp S-------SH---------HHHHHHHHHHHHTTCSEEE----EEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHH
T ss_pred C-------CH---------HHHHHHHHHHHHhhHHHHh----hccccccCCchhccccccccccccccchhHHHHHHHHH
Confidence 1 11 1234556666666676665 455532110 111111111 111223444444
Q ss_pred HHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHH
Q 011677 270 KEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 270 ~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~ 348 (479)
+.+.+.+|.+ ..+ +|+| +.||.++++++. +.+++|+|.|||||++++|+++|++
T Consensus 212 ~avR~a~G~~-~~l~vDan-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~ 266 (421)
T 4hnl_A 212 AAIKEKYGNQ-FQMLHDVH-----------------------ERLHPNQAIQFA-KAAEPYQLFFLEDILPPDQSHWLTQ 266 (421)
T ss_dssp HHHHHHHTTS-SEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCCSEEECCSCGGGGGGHHH
T ss_pred HHHHHHhCCC-ceEecccc-----------------------ccCCHHHHHHHH-HHhhhhhhcccccCCcccchHHHHH
Confidence 4444444755 556 8984 367899999875 5689999999999999999999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCC-C--c
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGE-T--E 424 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ge-t--~ 424 (479)
|++++ +||++||.. .++++++++++.+++|++ |+|++++||||++++++++|+++|+++ +.|+.++ + .
T Consensus 267 l~~~~~ipIa~dE~~-~~~~~~~~~i~~~a~d~v------~~d~~~~GGite~~~ia~~A~~~gi~v-~~h~~~~~s~i~ 338 (421)
T 4hnl_A 267 LRSQSATPIATGELF-NNPMEWQELVKNRQIDFM------RAHVSQIGGITPALKLAHFCDAMGVRI-AWHTPSDISPVG 338 (421)
T ss_dssp HHTTCCCCEEECTTC-CSGGGTHHHHHTTCCSEE------CCCGGGGTSHHHHHHHHHHHHHTTCEE-CCCCCSSSCHHH
T ss_pred HHhcCCCCeecCcce-ehhHHHHHHHhcCCceEE------EeCCCCCCCHHHHHHHHHHHHHCCCeE-EEeCCcchhHHH
Confidence 99999 999999976 459999999999999999 999999999999999999999999997 5576665 3 2
Q ss_pred hhHHHHhHhhcCC
Q 011677 425 DSFIADLSVGLAS 437 (479)
Q Consensus 425 d~~~~dlAv~~~~ 437 (479)
.++.+||+.++..
T Consensus 339 ~aa~~hl~aa~~n 351 (421)
T 4hnl_A 339 LAVNTHLNIHLHN 351 (421)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 3456677777643
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-44 Score=372.16 Aligned_cols=316 Identities=18% Similarity=0.207 Sum_probs=234.7
Q ss_pred CceeeEEEEEEEecCCCCc-----eEEEEEEeCCCceeeecCCCCCCCceee-eeeccCCCCccccccHHHHHHHHHHHH
Q 011677 44 PSVITKIKARQILDSRGIP-----TVEVDLFTHKGMFRASVPSGDPSGMYEA-LELRDGDKGTYLGNSVNRAVKNINERI 117 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~-----~v~V~v~t~~G~~~~~~ps~~~~G~~Ea-~~~~d~~~~~y~g~~~~~av~~i~~~l 117 (479)
+|+|++|+++.+..+...| +++|+|+|++|++ |+||+ ... +.+...+...+++ +
T Consensus 3 ~MkI~~i~~~~~~~p~~~p~~~~~~v~V~v~td~G~~----------G~Ge~a~~~---------g~~~~~~~~~i~~-l 62 (407)
T 2o56_A 3 LMKITSVDIIDVANDFASATSKWRPVVVKINTDEGIS----------GFGEVGLAY---------GVGASAGIGMAKD-L 62 (407)
T ss_dssp CCCEEEEEEEECCCCC-----CCCCEEEEEEETTSCE----------EEEEESCSS---------SSCHHHHHHHHHH-H
T ss_pred CCEEEEEEEEEeccccCCCcccceeEEEEEEeCCCCE----------EEEeeccCC---------CCchHHHHHHHHH-H
Confidence 3699999999998776666 6799999999984 99997 431 2234556666776 9
Q ss_pred HHhhcCCCCCCHHHHHHHHHhhh-ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEe-e
Q 011677 118 SEALVGMDPILQSQIDQAMIDLD-KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTV-I 195 (479)
Q Consensus 118 ~p~LiG~d~~~~~~id~~l~~~~-~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~-i 195 (479)
+|.|+|+||.+++++|+.|.+.. .+.+++++..+|++|||+||||+.||..|+|||++||| .. +.++|+|++ +
T Consensus 63 ~p~liG~d~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg---~~--~~~vp~y~~~i 137 (407)
T 2o56_A 63 SAIIIGMDPMNNEAIWEKMLKKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGG---KS--REKIRTYASQL 137 (407)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHSSSGGGGCBHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CS--CSSEEEEEECG
T ss_pred HHHhCCCChHHHHHHHHHHHHhccccCCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCC---CC--CCeeeeeeeec
Confidence 99999999999999999998643 22244556789999999999999999999999999998 32 345677876 6
Q ss_pred c-C-CccC--CCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhh------CCCCcccCCCCCCCC--CCCchH
Q 011677 196 S-G-GKHA--GNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKY------GAHGCNVGEDGGLAP--NISSIR 263 (479)
Q Consensus 196 ~-G-G~~~--~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~------G~~~~~vg~~G~~~~--~~~~~~ 263 (479)
+ | +.|+ ++..+.++ ..+++.+...++|+.+| .|. |.. ..+.+|++.+ ..+.+.
T Consensus 138 ~~g~~~~~~~~~~~~~~~---------~~~~a~~~~~~Gf~~vK----ik~~~~~~~G~~--~~s~~~~~~~~~~~~~~~ 202 (407)
T 2o56_A 138 QFGWGDGSDKDMLTEPEQ---------YAQAALTAVSEGYDAIK----VDTVAMDRHGNW--NQQNLNGPLTDKILRLGY 202 (407)
T ss_dssp GGCCSTTCTTCCCCSHHH---------HHHHHHHHHHTTCSEEE----ECCSSBCTTSCB--SCSCCCSSCCHHHHHHHH
T ss_pred cCCccccccccccCCHHH---------HHHHHHHHHHcCCCEEE----EcccccCCcCcc--ccCcccCCCchhHHHHHH
Confidence 5 4 3343 22233333 24555666666676666 332 211 1122333332 112234
Q ss_pred HHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccC
Q 011677 264 EGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED 342 (479)
Q Consensus 264 ~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D 342 (479)
+.++.||+++ |.+ ..| +|++ +.||.++++++++ .+++|+|.|||||++++|
T Consensus 203 e~v~avR~a~---G~d-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~~i~~iE~P~~~~~ 254 (407)
T 2o56_A 203 DRMAAIRDAV---GPD-VDIIAEMH-----------------------AFTDTTSAIQFGR-MIEELGIFYYEEPVMPLN 254 (407)
T ss_dssp HHHHHHHHHH---CTT-SEEEEECT-----------------------TCSCHHHHHHHHH-HHGGGCCSCEECSSCSSS
T ss_pred HHHHHHHHhc---CCC-CEEEEECC-----------------------CCCCHHHHHHHHH-HHHhcCCCEEeCCCChhh
Confidence 5555555555 654 456 8883 3578899998865 589999999999999999
Q ss_pred HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCC
Q 011677 343 WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG 421 (479)
Q Consensus 343 ~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~g 421 (479)
+++|++|++++ +||++||+.. ++++++++++.+++|+| ++|++++||||++++++++|+++|+++++ |++.
T Consensus 255 ~~~~~~l~~~~~iPIa~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~~GGite~~~i~~~A~~~g~~~~~-h~~~ 326 (407)
T 2o56_A 255 PAQMKQVADKVNIPLAAGERIY-WRWGYRPFLENGSLSVI------QPDICTCGGITEVKKICDMAHVYDKTVQI-HVCG 326 (407)
T ss_dssp HHHHHHHHHHCCSCEEECTTCC-HHHHHHHHHHTTCCSEE------CCCTTTTTHHHHHHHHHHHHHTTTCEECC-CCCS
T ss_pred HHHHHHHHHhCCCCEEeCCCcC-CHHHHHHHHHcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCeEee-cCCC
Confidence 99999999999 9999999865 59999999999999999 99999999999999999999999999876 6554
Q ss_pred CCch--hHHHHhHhhcC
Q 011677 422 ETED--SFIADLSVGLA 436 (479)
Q Consensus 422 et~d--~~~~dlAv~~~ 436 (479)
+.. ++.+|||.++.
T Consensus 327 -s~i~~aa~~hlaaa~~ 342 (407)
T 2o56_A 327 -GPISTAVALHMETAIP 342 (407)
T ss_dssp -CHHHHHHHHHHHHHCT
T ss_pred -CHHHHHHHHHHHHhCC
Confidence 554 45567776654
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=373.16 Aligned_cols=316 Identities=17% Similarity=0.163 Sum_probs=238.4
Q ss_pred ceeeEEEEEEEec--CCCCc----eEEEEEEeCCCceeeecCCCCCCCceee-eeeccCCCCccccccHHHHHHHHHHHH
Q 011677 45 SVITKIKARQILD--SRGIP----TVEVDLFTHKGMFRASVPSGDPSGMYEA-LELRDGDKGTYLGNSVNRAVKNINERI 117 (479)
Q Consensus 45 ~~I~~I~~~~i~d--s~g~~----~v~V~v~t~~G~~~~~~ps~~~~G~~Ea-~~~~d~~~~~y~g~~~~~av~~i~~~l 117 (479)
|+|++|+++.+.. +++.| +++|+|+|++|++ |+||+ ... +.+...+...+++ +
T Consensus 3 MkI~~i~~~~~~~pl~~~~~~~~~~v~V~v~td~G~~----------G~Ge~~~~~---------g~~~~~~~~~i~~-l 62 (410)
T 2gl5_A 3 LKITSIEVFDCELKKRDQTMSSYNPVLIRVNTDSGLS----------GIGEVGLAY---------GAGAKAGVGIIRD-L 62 (410)
T ss_dssp CCEEEEEEEECCGGGTCGGGTTCCCEEEEEEETTSCE----------EEEEESCSS---------STTHHHHHHHHHH-H
T ss_pred ceEEEEEEEEecccccccCcccccceEEEEEeCCCCE----------EEEeecCcC---------CCChHHHHHHHHH-H
Confidence 7999999999965 22223 6799999999984 99997 431 2234555666776 9
Q ss_pred HHhhcCCCCCCHHHHHHHHHhhh-ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEe-e
Q 011677 118 SEALVGMDPILQSQIDQAMIDLD-KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTV-I 195 (479)
Q Consensus 118 ~p~LiG~d~~~~~~id~~l~~~~-~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~-i 195 (479)
+|.|+|+||.++++||+.|.+.. .+.++++++.+|++|||+||||+.||.+|+|||+|||| .. +-++|+|+. +
T Consensus 63 ~p~liG~d~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg---~~--~~~vp~y~~~i 137 (410)
T 2gl5_A 63 APLIVGEDPLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGG---KT--NEKLRTYASQL 137 (410)
T ss_dssp GGGTTTSCTTCHHHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTS---CS--CSSEEEEEECG
T ss_pred HHHhCCCChHHHHHHHHHHHHhcccccCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCC---Cc--cCceeEeEecc
Confidence 99999999999999999998643 22245667789999999999999999999999999998 32 335777877 6
Q ss_pred c-C-CccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhh------CCCC----cccCCCCCCCC--CCCc
Q 011677 196 S-G-GKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKY------GAHG----CNVGEDGGLAP--NISS 261 (479)
Q Consensus 196 ~-G-G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~------G~~~----~~vg~~G~~~~--~~~~ 261 (479)
+ | +.|+++.++++++ .+++.+...++|+.+| .|. |... ++. ..||+.+ .++.
T Consensus 138 ~~g~~~~~~~~~~~~~~---------~~~a~~~~~~Gf~~vK----ik~~~~~~~G~~~~~~~~~~-~~GG~~~~~~~~~ 203 (410)
T 2gl5_A 138 QFGWGDKNHILVTPEEY---------AEAARAALDDGYDAIK----VDPLEIDRNGDDCVFQNRNR-NYSGLLLADQLKM 203 (410)
T ss_dssp GGCCTTCCSCCCSHHHH---------HHHHHHHHHTTCSEEE----ECSSSBCTTSCBTTTSSCCG-GGGSCCCHHHHHH
T ss_pred cCCccccccccCCHHHH---------HHHHHHHHHcCCCEEE----EeccccCCcccccccccccc-cccCccchhHHHH
Confidence 6 5 6677665555542 4556666666777766 332 2100 000 1344432 2233
Q ss_pred hHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCc
Q 011677 262 IREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDK 340 (479)
Q Consensus 262 ~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~ 340 (479)
+.+.++.||+++ |.+ ..| +|++ +.||.++++++++ .+++|+|.|||||+++
T Consensus 204 ~~e~v~avR~a~---G~d-~~l~vDan-----------------------~~~~~~~ai~~~~-~l~~~~i~~iE~P~~~ 255 (410)
T 2gl5_A 204 GEARIAAMREAM---GDD-ADIIVEIH-----------------------SLLGTNSAIQFAK-AIEKYRIFLYEEPIHP 255 (410)
T ss_dssp HHHHHHHHHHHH---CSS-SEEEEECT-----------------------TCSCHHHHHHHHH-HHGGGCEEEEECSSCS
T ss_pred HHHHHHHHHHhc---CCC-CEEEEECC-----------------------CCCCHHHHHHHHH-HHHhcCCCeEECCCCh
Confidence 455666666655 654 456 8883 3578899998865 4899999999999999
Q ss_pred cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 341 EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 341 ~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
+|+++|++|++++ +||++||+.. ++++++++++.+++|+| ++|++++||||++++++++|+++|+++++ |+
T Consensus 256 ~~~~~~~~l~~~~~iPIa~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~ia~~A~~~gi~~~~-h~ 327 (410)
T 2gl5_A 256 LNSDNMQKVSRSTTIPIATGERSY-TRWGYRELLEKQSIAVA------QPDLCLCGGITEGKKICDYANIYDTTVQV-HV 327 (410)
T ss_dssp SCHHHHHHHHHHCSSCEEECTTCC-TTHHHHHHHHTTCCSEE------CCCTTTTTHHHHHHHHHHHHHTTTCEECC-CC
T ss_pred hhHHHHHHHHhhCCCCEEecCCcC-CHHHHHHHHHcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCeEee-cC
Confidence 9999999999999 9999999865 59999999999999999 99999999999999999999999999866 65
Q ss_pred CCCCchh--HHHHhHhhcC
Q 011677 420 SGETEDS--FIADLSVGLA 436 (479)
Q Consensus 420 ~get~d~--~~~dlAv~~~ 436 (479)
+ ++..+ +.+|||.++.
T Consensus 328 ~-~s~i~~aa~~hlaaa~~ 345 (410)
T 2gl5_A 328 C-GGPVSTVAALHMETAIP 345 (410)
T ss_dssp C-SSHHHHHHHHHHHHHCT
T ss_pred C-CCHHHHHHHHHHHHhCC
Confidence 5 36544 5567776654
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=365.02 Aligned_cols=311 Identities=19% Similarity=0.171 Sum_probs=234.8
Q ss_pred ceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHH-hhcC
Q 011677 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISE-ALVG 123 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p-~LiG 123 (479)
|+|++|+++.+. +.+.++++|+|+|++|+ +|+||+... | |++..+++..++ .++| .|+|
T Consensus 3 mkI~~i~~~~v~-~~~~~~v~V~v~td~G~----------~G~GE~~~~-------~-g~~~~~~~~~i~-~l~~~~l~G 62 (392)
T 2poz_A 3 LKITGVNIYLLK-SGRLHPVLVEISTDEGI----------TGAGEAGIA-------Y-GVGGTAAAGMIK-DLSERFLIG 62 (392)
T ss_dssp CCEEEEEEEECC-BTTBCCEEEEEEETTSC----------CEEEEESCS-------S-SSCHHHHHHHHH-HHHHHHTTT
T ss_pred CeEEEEEEEEEe-cCCccEEEEEEEECCCC----------EEEEeecCC-------c-CCchHHHHHHHH-HhhHhhhcC
Confidence 799999999998 66667899999999998 599998541 3 566777777786 4999 9999
Q ss_pred CCCCCHHHHHHHHHhh-hccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCC
Q 011677 124 MDPILQSQIDQAMIDL-DKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAG 202 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~-~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~ 202 (479)
+||.+++++|+.|.+. .++.++++++.+|++|||+||||+.||.+|+|||+|||| .. +-++|+|++ | |.+
T Consensus 63 ~d~~~~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg---~~--~~~v~~y~~---g-~~~ 133 (392)
T 2poz_A 63 KDPSRIEELWSTMYDHSFWAKNGGAIIFAGISAIEQALWDIKGKCLGVPVYELFGG---KI--RDRVRAYAN---G-WYG 133 (392)
T ss_dssp CCTTCHHHHHHHHHHHSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CS--CSEEEEEEC---S-CCT
T ss_pred CChhHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCC---Cc--cCceEEEEe---c-ccc
Confidence 9999999999999764 333345567789999999999999999999999999998 32 236777875 2 222
Q ss_pred CcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCC-CCCC------CCCCchHHHHHHHHHHHHh
Q 011677 203 NNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGED-GGLA------PNISSIREGLDLVKEAINR 275 (479)
Q Consensus 203 ~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~-G~~~------~~~~~~~~~l~~v~~ai~~ 275 (479)
+..+.++ ..+++.+...++|+.+| .|.|.... +.. +++. .+.+.+.+.++.||+++
T Consensus 134 ~~~~~~~---------~~~~a~~~~~~Gf~~vK----ik~g~~~~--g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~-- 196 (392)
T 2poz_A 134 AADTPDE---------FARAVERPLKEGYGALK----FYPLAQRV--GSALQHVTRRSMSAEAIELAYRRVKAVRDAA-- 196 (392)
T ss_dssp TCCSHHH---------HHHHTHHHHHTTCSEEE----ECCCCEEE--TTEEECCBTTBCCHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCHHH---------HHHHHHHHHHcCCCEEE----Eecccccc--cccccccccCCcchhhHHHHHHHHHHHHHhc--
Confidence 1122232 24455555556666665 34331100 000 0111 11233445566666555
Q ss_pred cCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-
Q 011677 276 TGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC- 353 (479)
Q Consensus 276 ~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~- 353 (479)
|.+ ..| +|++ +.||.+|++++++ .+++|++.|||||++++|+++|++|++++
T Consensus 197 -G~d-~~l~vD~n-----------------------~~~~~~~a~~~~~-~l~~~~i~~iE~P~~~~~~~~~~~l~~~~~ 250 (392)
T 2poz_A 197 -GPE-IELMVDLS-----------------------GGLTTDETIRFCR-KIGELDICFVEEPCDPFDNGALKVISEQIP 250 (392)
T ss_dssp -CTT-SEEEEECT-----------------------TCSCHHHHHHHHH-HHGGGCEEEEECCSCTTCHHHHHHHHHHCS
T ss_pred -CCC-CEEEEECC-----------------------CCCCHHHHHHHHH-HHHhcCCCEEECCCCcccHHHHHHHHhhCC
Confidence 654 456 8883 3578899998865 48999999999999999999999999999
Q ss_pred hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHh
Q 011677 354 QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADL 431 (479)
Q Consensus 354 ~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dl 431 (479)
+||++||+..+ +++++++++.+++|++ ++|++++||||++++++++|+++|+++++ |+++ +.. ++.+||
T Consensus 251 ipIa~dE~~~~-~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~-h~~~-s~i~~aa~~hl 321 (392)
T 2poz_A 251 LPIAVGERVYT-RFGFRKIFELQACGII------QPDIGTAGGLMETKKICAMAEAYNMRVAP-HVCG-SSLIETATLQL 321 (392)
T ss_dssp SCEEECTTCCH-HHHHHHHHTTTCCSEE------CCCTTTSSCHHHHHHHHHHHHTTTCEECC-CCCS-SHHHHHHHHHH
T ss_pred CCEEecCCcCC-HHHHHHHHHcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCeEec-CCCC-CHHHHHHHHHH
Confidence 99999998765 9999999999999999 99999999999999999999999999866 6665 654 455677
Q ss_pred HhhcC
Q 011677 432 SVGLA 436 (479)
Q Consensus 432 Av~~~ 436 (479)
|.++.
T Consensus 322 aaa~~ 326 (392)
T 2poz_A 322 EANIT 326 (392)
T ss_dssp HHHCT
T ss_pred HHhCC
Confidence 76654
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=353.60 Aligned_cols=304 Identities=16% Similarity=0.159 Sum_probs=222.6
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+++.+- .+.+ ++.++|+|+|++|++ |+||+... ......
T Consensus 1 MKIt~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~i~td~G~~----------G~GE~~~~-------------~~~~~~ 57 (378)
T 4hpn_A 1 MKITAVRTHLLEHRLDTPFESASMRFDRRAHVLVEIECDDGTV----------GWGECLGP-------------ARPNAA 57 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEECSC-------------HHHHHH
T ss_pred CEEEEEEEEEEeccCCCCeECCCEEEEEEEEEEEEEEECCCCE----------EEEEecCC-------------cchHHH
Confidence 699999998772 3333 457999999999984 99997541 122234
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+.+.++|.|+|+||.+.+.+|+.|.+.....+..++..+|++|||+||||+.||.+|+|||++||| ..+.++| .|
T Consensus 58 ~~~~~~~~liG~d~~~~e~~~~~l~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGg---~~~~~~~--~y 132 (378)
T 4hpn_A 58 VVQAYSGWLIGQDPRQTEKIWAVLYNALRDQGQRGLSLTALSGIDIALWDIKGKHYGASISMLLGG---RWRESVR--AY 132 (378)
T ss_dssp HHHHHHTTTTTSCTTCHHHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CSCSEEE--EE
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHhhhhccCccccccCC---ccccCcc--ee
Confidence 667899999999999999999999864332233345678999999999999999999999999998 3344544 45
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEA 272 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~a 272 (479)
++ ++...++ ..+ ..+..+++.+...++|+.+| .|.| .+.+++.+.++.||++
T Consensus 133 ~~--~~~~~~~---~~~------~~~~~~~~~~~~~~Gf~~~K----~k~g-------------~~~~~di~~v~avr~~ 184 (378)
T 4hpn_A 133 AT--GSFKRDN---VDR------VSDNASEMAERRAEGFHACK----IKIG-------------FGVEEDLRVIAAVREA 184 (378)
T ss_dssp EE--CCCBCTT---CCH------HHHHHHHHHHHHHTTCSEEE----EECC-------------SCHHHHHHHHHHHHHH
T ss_pred ee--ecccccc---chh------HHHHHHHHHHHHHhccceec----cccc-------------CChHHHHHHHHHHHHh
Confidence 54 2211110 000 01122333333334444433 3322 1223445566666666
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+ |.+ ..+ +|+| +.||.++++++. +.+++|+|.|||||++++|++++++|++
T Consensus 185 ~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~ 236 (378)
T 4hpn_A 185 I---GPD-MRLMIDAN-----------------------HGYTVTEAITLG-DRAAGFGIDWFEEPVVPEQLDAYARVRA 236 (378)
T ss_dssp H---TTT-SEEEEECT-----------------------TCCCHHHHHHHH-HHHGGGCCSCEECCSCTTCHHHHHHHHH
T ss_pred c---CCc-EEEEEecC-----------------------cccCHHHHHHHH-hhhhhcccchhhcCCCccchhhhHHHHh
Confidence 5 655 456 9984 367899999875 4589999999999999999999999999
Q ss_pred hh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCC-chhHHH
Q 011677 352 IC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGET-EDSFIA 429 (479)
Q Consensus 352 ~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get-~d~~~~ 429 (479)
++ +||++||+.. ++++++++++.+++|++ |+|++++||||++++++++|+++|+++ ++|+.+.. ..++.+
T Consensus 237 ~~~ipIa~dE~~~-~~~~~~~~i~~~a~d~i------~~d~~~~GGit~~~~ia~~A~~~gi~v-~~h~~~~~i~~aa~~ 308 (378)
T 4hpn_A 237 GQPIPVAGGETWH-GRYGMWQALSAGAVDIL------QPDLCGCGGFSEIQKIATLATLHGVRI-VPHVWGTGVQIAAAL 308 (378)
T ss_dssp HSSSCEEECTTCC-HHHHHHHHHHTTCCSEE------CCBTTTTTHHHHHHHHHHHHHHHTCEE-CCBCCSSHHHHHHHH
T ss_pred hCCceeeCCcCcc-chHhHHHHHHcCCCCEE------eeCCeeCCChhHHHHHHHHHHHcCCeE-EeCCCCcHHHHHHHH
Confidence 99 9999999865 49999999999999999 999999999999999999999999995 78976432 335667
Q ss_pred HhHhhcCCCCc
Q 011677 430 DLSVGLASGQI 440 (479)
Q Consensus 430 dlAv~~~~~~i 440 (479)
|++.++.....
T Consensus 309 h~~aa~~~~~~ 319 (378)
T 4hpn_A 309 QFMAAMTPDPV 319 (378)
T ss_dssp HHHHHCCCSSC
T ss_pred HHHHHcCcccc
Confidence 77777655443
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=361.05 Aligned_cols=316 Identities=19% Similarity=0.210 Sum_probs=225.9
Q ss_pred HhhhcC-CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHH
Q 011677 38 HMRKAV-PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINER 116 (479)
Q Consensus 38 ~~~~~~-~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~ 116 (479)
||...+ +|+|++|++..+- ..+...+.|+|+|++|+ +|+||+.. .+.. .++...|++.
T Consensus 19 ~~~~~~~~mkIt~v~~~~~~-~~~~~~v~V~v~td~Gi----------~G~GE~~~-------~~~~---~~~~~~i~~~ 77 (422)
T 3tji_A 19 YFQSMMTPVIIKNIECFITR-PDRHNLVTVRVTTEQGI----------TGHGCATF-------QQRP---LAVKTLVDEY 77 (422)
T ss_dssp -----CCCCBEEEEEEEEEC-SSSSCEEEEEEEETTSC----------CEEEECCC-------TTSH---HHHHHHHHHT
T ss_pred eccccCCCcEEEEEEEEEEc-CCCccEEEEEEEECCCC----------EEEEeccC-------CCCH---HHHHHHHHHH
Confidence 566654 6899999998773 22336899999999999 59999753 1222 3445567777
Q ss_pred HHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeec
Q 011677 117 ISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVIS 196 (479)
Q Consensus 117 l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~ 196 (479)
++|.|+|+||.+++++|+.|.+.. .+..+.+..+|++|||+||||+.||.+|+|||+|||| ..+.++| +|+.++
T Consensus 78 l~p~LiG~dp~~ie~~~~~l~~~~-~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~--~y~~~~ 151 (422)
T 3tji_A 78 LQPLMIGRDANNIEDLWQMMNVNA-YWRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGG---KSRDAIP--AYSHAS 151 (422)
T ss_dssp HHHHHTTSBTTCHHHHHHHHHHTT-SSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSSSCEE--EEEEEE
T ss_pred HHHHhCCCCcccHHHHHHHHHHhh-hccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCC---CCCCeEE--EEEEeC
Confidence 999999999999999999998642 1222345578999999999999999999999999998 3344555 465443
Q ss_pred CCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCccc----C----CCCC-CCCC--CCchHHH
Q 011677 197 GGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNV----G----EDGG-LAPN--ISSIREG 265 (479)
Q Consensus 197 GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~v----g----~~G~-~~~~--~~~~~~~ 265 (479)
+. +. +...+++.+...++|+++| .|.|.....- . ..|. |... ++.+.+.
T Consensus 152 ~~-------~~---------e~~~~~a~~~~~~G~~~iK----lKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~ 211 (422)
T 3tji_A 152 GE-------TL---------EALFASVDALIAQGYRHIR----CQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEM 211 (422)
T ss_dssp ES-------SH---------HHHHHHHHHHHHTTCSEEE----EEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHH
T ss_pred CC-------CH---------HHHHHHHHHHHHcCCCEEE----EeeccCCcccccccccccccccccccchhHHHHHHHH
Confidence 21 11 1234445555556676665 5655321000 0 0000 0000 1223455
Q ss_pred HHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHH
Q 011677 266 LDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE 344 (479)
Q Consensus 266 l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~ 344 (479)
++.||+++ |.+ ..| +|+| +.||.++++++. +.++++++.|||||++++|++
T Consensus 212 v~avR~av---G~d-~~L~vDaN-----------------------~~~~~~~A~~~~-~~Le~~~i~~iEqP~~~~d~~ 263 (422)
T 3tji_A 212 FHALREKY---GWK-LHILHDVH-----------------------ERLFPQQAVQLA-KQLEPFQPYFIEDILPPQQSA 263 (422)
T ss_dssp HHHHHHHH---CSS-SEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCCSEEECCSCGGGGG
T ss_pred HHHHHHHc---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHHhhCCCeEECCCChhhHH
Confidence 55555555 644 456 8883 367889999875 558999999999999999999
Q ss_pred HHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCC-C
Q 011677 345 HTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG-E 422 (479)
Q Consensus 345 g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~g-e 422 (479)
++++|++++ +||++||+.. ++++++++++.+++|+| ++|++++||||++++++++|+++|++++ .|+.. +
T Consensus 264 ~~~~l~~~~~iPIa~dE~~~-~~~~~~~ll~~ga~d~v------~~k~~~~GGit~~~kia~lA~a~gv~v~-~h~~~~~ 335 (422)
T 3tji_A 264 WLEQVRQQSCVPLALGELFN-NPAEWHDLIVNRRIDFI------RCHVSQIGGITPALKLAHLCQAFGVRLA-WHGPGDM 335 (422)
T ss_dssp GHHHHHHHCCCCEEECTTCC-SGGGTHHHHHTTCCSEE------CCCGGGGTSHHHHHHHHHHHHHTTCEEC-CCCCSSS
T ss_pred HHHHHHhhCCCCEEEeCCcC-CHHHHHHHHhcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCEEE-ecCCCCc
Confidence 999999999 9999999865 59999999999999999 9999999999999999999999999975 46553 5
Q ss_pred Cch--hHHHHhHhhcC
Q 011677 423 TED--SFIADLSVGLA 436 (479)
Q Consensus 423 t~d--~~~~dlAv~~~ 436 (479)
+.. ++.+|||.++.
T Consensus 336 s~Ig~aA~~hlaaa~p 351 (422)
T 3tji_A 336 TPIGVAVNTHLNIHLH 351 (422)
T ss_dssp CHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHhCC
Confidence 544 45667776653
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=355.02 Aligned_cols=301 Identities=17% Similarity=0.118 Sum_probs=226.8
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
||+|++|+++.+. .+.+ +..+.|+|+|++|++ |+||+.++.. +.|++++...+..
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td~G~~----------G~GE~~~~~~---~~y~~e~~~~~~~ 70 (381)
T 3fcp_A 4 TATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGIC----------GIGEATTIGG---LSYGVESPEAISS 70 (381)
T ss_dssp CCBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCE----------EEEEEECSTT---TTSSSCCHHHHHH
T ss_pred CcEEEEEEEEEEeccccCCeEecccEEEeeeEEEEEEEECCCCE----------EEeccccCCC---CccCCCCHHHHHH
Confidence 6899999999883 2222 357899999999994 9999987532 4578888888888
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.|++.++|.|+|+||.+.+++|+.|.+... +. .+|++|||+||||+.||..|+|||++||| ..+.++|+
T Consensus 71 ~i~~~l~p~l~G~d~~~~~~~~~~l~~~~~----g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg---~~r~~v~~-- 139 (381)
T 3fcp_A 71 AITHYLTPLLKGQPADNLNALTARMNGAIK----GN--TFAKSAIETALLDAQGKALGLPVSALLGG---ALQTALPV-- 139 (381)
T ss_dssp HHHHTHHHHHTTSBSSCHHHHHHHHHHHCC----SC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CSCSEEEB--
T ss_pred HHHHHHHHHhcCCCcCCHHHHHHHHHHHhc----Cc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCC---CCCCceee--
Confidence 888889999999999999999999976321 11 57999999999999999999999999998 33455555
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHH-HHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGS-ETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~-e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
|..++.| +. ...++++.+... .+|+.+| .|.|. .+.+.+.+.++.||
T Consensus 140 ~~t~~~~-------~~---------~~~~~~~~~~~~~~G~~~~K----iKvg~------------~~~~~d~~~v~avR 187 (381)
T 3fcp_A 140 LWTLASG-------DT---------AKDIAEGEKLLAEGRHRAFK----LKIGA------------RELATDLRHTRAIV 187 (381)
T ss_dssp CEEECSS-------CH---------HHHHHHHHHHTC----CEEE----EECCS------------SCHHHHHHHHHHHH
T ss_pred EEEecCC-------Ch---------HHHHHHHHHHHHhCCCCEEE----EecCC------------CChHHHHHHHHHHH
Confidence 4333222 11 112334444333 3565555 45431 11233455555555
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L 349 (479)
+++ |.+ ..+ +|+| +.||.++++++. +.+++|++.|||||++++|++++++|
T Consensus 188 ~a~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l 239 (381)
T 3fcp_A 188 EAL---GDR-ASIRVDVN-----------------------QAWDAATGAKGC-RELAAMGVDLIEQPVSAHDNAALVRL 239 (381)
T ss_dssp HHT---CTT-CEEEEECT-----------------------TCBCHHHHHHHH-HHHHHTTCSEEECCBCTTCHHHHHHH
T ss_pred HHc---CCC-CeEEEECC-----------------------CCCCHHHHHHHH-HHHhhcCccceeCCCCcccHHHHHHH
Confidence 544 644 456 9983 367889999875 55899999999999999999999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS-- 426 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~-- 426 (479)
++++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|+ .|+..+
T Consensus 240 ~~~~~ipIa~dE~~~-~~~~~~~~~~~~a~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~-~es~i~~a 311 (381)
T 3fcp_A 240 SQQIETAILADEAVA-TAYDGYQLAQQGFTGAY------ALKIAKAGGPNSVLALARVAQAAGIGLYGGTM-LEGTVGTV 311 (381)
T ss_dssp HHHSSSEEEESTTCC-SHHHHHHHHHTTCCSEE------EECHHHHTSTTHHHHHHHHHHHHTCEEEECCS-CCCHHHHH
T ss_pred HHhCCCCEEECCCcC-CHHHHHHHHHcCCCCEE------EecccccCCHHHHHHHHHHHHHcCCceecCCC-CccHHHHH
Confidence 9999 9999999865 59999999999999999 99999999999999999999999999977665 466554
Q ss_pred HHHHhHhhcC
Q 011677 427 FIADLSVGLA 436 (479)
Q Consensus 427 ~~~dlAv~~~ 436 (479)
+.+||+.++.
T Consensus 312 a~~hlaaa~~ 321 (381)
T 3fcp_A 312 ASLHAWSTLP 321 (381)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHHhCC
Confidence 5556655544
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=355.79 Aligned_cols=299 Identities=18% Similarity=0.217 Sum_probs=228.3
Q ss_pred CceeeEEEEEEEe--------cCC----------CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCcccccc
Q 011677 44 PSVITKIKARQIL--------DSR----------GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNS 105 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~----------g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~ 105 (479)
+|+|++|+.+.+. .+. ..++++|+|+|++|++ |+||+.. +.+.++
T Consensus 25 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~----------G~GE~~~------~~~~~~- 87 (398)
T 2pp0_A 25 GDRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFE----------GVGFSYS------KRAGGQ- 87 (398)
T ss_dssp SCCEEEEEEEEEEEEEEEEECCHHHHTTSSCCEEEEEEEEEEEEETTSCE----------EEEEEEE------SSTTHH-
T ss_pred CCeEEEEEEEEEeccCCCcccccccccccccccCCCcEEEEEEEECCCCE----------EEEEecC------ccchHH-
Confidence 5899999998883 111 2467999999999984 9999832 112222
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCc
Q 011677 106 VNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNL 185 (479)
Q Consensus 106 ~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~ 185 (479)
++..+.+.++|.|+|+||.+++++|+.|.+.+...+.++++.+|++|||+||||+.||.+|+|||+|||| .
T Consensus 88 ---~~~~~~~~l~p~l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg---~--- 158 (398)
T 2pp0_A 88 ---GIYAHAKEIADNLLGEDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLGA---H--- 158 (398)
T ss_dssp ---HHHHHHHHHGGGGTTSCTTCHHHHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHHCC---S---
T ss_pred ---HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C---
Confidence 3333344699999999999999999999876532233557789999999999999999999999999998 2
Q ss_pred ccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHH
Q 011677 186 TLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREG 265 (479)
Q Consensus 186 ~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~ 265 (479)
+.++|+|+++ ||.+. .+.++ ..+++.+...++|+.+| .|.| . ++.+.+.+.
T Consensus 159 ~~~vp~y~~~-g~~~~---~~~e~---------~~~~a~~~~~~Gf~~vK----ik~g-------~-----~~~~~d~e~ 209 (398)
T 2pp0_A 159 RDSVQCYNTS-GGFLH---TPLDQ---------VLKNVVISRENGIGGIK----LKVG-------Q-----PNCAEDIRR 209 (398)
T ss_dssp CSEEEEEECT-TSCTT---SCHHH---------HHHHHHHHHHTTCSCEE----EECC-------C-----SCHHHHHHH
T ss_pred CCCeeEEEec-CCcCC---CCHHH---------HHHHHHHHHHhCCCeEE----EecC-------C-----CCHHHHHHH
Confidence 3456778764 33221 12222 24455555555665555 3422 1 223345667
Q ss_pred HHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHH
Q 011677 266 LDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE 344 (479)
Q Consensus 266 l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~ 344 (479)
++.||+++ |.+ ..| +|+| +.||.+++++++. .+++|+|.|||||++++|++
T Consensus 210 v~avR~av---G~d-~~l~vDan-----------------------~~~~~~~ai~~~~-~l~~~~i~~iEqP~~~~d~~ 261 (398)
T 2pp0_A 210 LTAVREAL---GDE-FPLMVDAN-----------------------QQWDRETAIRMGR-KMEQFNLIWIEEPLDAYDIE 261 (398)
T ss_dssp HHHHHHHH---CSS-SCEEEECT-----------------------TCSCHHHHHHHHH-HHGGGTCSCEECCSCTTCHH
T ss_pred HHHHHHHc---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HHHHcCCceeeCCCChhhHH
Confidence 77777766 644 456 8883 3578899998865 58999999999999999999
Q ss_pred HHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCC
Q 011677 345 HTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGET 423 (479)
Q Consensus 345 g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get 423 (479)
+|++|++++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|++++ +|+++++
T Consensus 262 ~~~~l~~~~~iPIa~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~~GGite~~~i~~~A~~~gi~~~-~h~~~~~ 333 (398)
T 2pp0_A 262 GHAQLAAALDTPIATGEMLT-SFREHEQLILGNASDFV------QPDAPRVGGISPFLKIMDLAAKHGRKLA-PHFAMEV 333 (398)
T ss_dssp HHHHHHHHCSSCEEECTTCC-SHHHHHHHHHTTCCSEE------CCCHHHHTSHHHHHHHHHHHHHTTCEEC-CCSCHHH
T ss_pred HHHHHHhhCCCCEEecCCcC-CHHHHHHHHHcCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCeEe-ecCccHH
Confidence 999999999 9999999865 69999999999999999 9999999999999999999999999975 6876654
Q ss_pred chhHHHHhHhhcCC
Q 011677 424 EDSFIADLSVGLAS 437 (479)
Q Consensus 424 ~d~~~~dlAv~~~~ 437 (479)
++|||+++..
T Consensus 334 ----~~~laaa~~~ 343 (398)
T 2pp0_A 334 ----HLHLSAAYPL 343 (398)
T ss_dssp ----HHHHHHTCSS
T ss_pred ----HHHHHhcCCC
Confidence 6899988754
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=357.91 Aligned_cols=314 Identities=13% Similarity=0.090 Sum_probs=225.1
Q ss_pred CceeeEEEEEEEecC----CCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHH
Q 011677 44 PSVITKIKARQILDS----RGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISE 119 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds----~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p 119 (479)
||+|++|+++.+--. .++..+.|+|+|++|++ |+||+..+. +. ..++...|++.++|
T Consensus 1 mMkIt~i~~~~~~~p~~~~~~~~~v~V~v~Td~G~~----------G~GE~~~~~------~~---~~~v~~~i~~~l~p 61 (433)
T 3rcy_A 1 MVKLRDLDIIVTAPPAPGWGGRYWILVKLTTDDGIT----------GWGECYAAS------VG---PEAMRAVIEDVFAR 61 (433)
T ss_dssp -CCEEEEEEEEECCCTTCTTCSCEEEEEEEETTSCE----------EEEEECCCS------SC---HHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCccCCceEEEEEEEECCCCE----------EEEeccCCC------CC---HHHHHHHHHHHHHH
Confidence 789999999988431 14578999999999994 999975431 22 23445567788999
Q ss_pred hhcCCCCCCHHHHHHHHHhhhccCCCCc-hhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEee---
Q 011677 120 ALVGMDPILQSQIDQAMIDLDKTEKKGE-LGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVI--- 195 (479)
Q Consensus 120 ~LiG~d~~~~~~id~~l~~~~~~~~~~~-~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i--- 195 (479)
.|+|+||.+++++|+.|.+.. ...++. +..+|++|||+||||+.||.+|+|||+|||| ..+.++| +|+.+
T Consensus 62 ~LiG~dp~~ie~~~~~l~~~~-~~~~g~~~~~~A~saID~ALWDl~gK~~g~Pv~~LLGG---~~r~~v~--~y~~~~~~ 135 (433)
T 3rcy_A 62 HMEGENPENIELMFRRVYSSG-FTQRPDLTAIGAFSGLEIACWDILGKARGRPVWALLGG---KMNPRIR--AYTYLYPL 135 (433)
T ss_dssp HTTTSCTTCHHHHHHHHHHTT-TCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTC---CSCSSEE--EEEECCCC
T ss_pred HhCCCCcccHHHHHHHHHhcc-cccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCC---CCCCeEE--EEEEEccc
Confidence 999999999999999998632 112222 5578999999999999999999999999998 3345554 46654
Q ss_pred cCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCC---CCchHHHHHHHHHH
Q 011677 196 SGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPN---ISSIREGLDLVKEA 272 (479)
Q Consensus 196 ~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~---~~~~~~~l~~v~~a 272 (479)
+|.-.. ..+. ..+...+++.+...++|+++| .|.|..... ..|..+. ++.+.+.++.||++
T Consensus 136 ~g~~~~-~~~~--------~~e~~~~~a~~~~~~Gf~~iK----lk~g~~~~~---~~G~~~~~~~~~~d~e~v~avR~a 199 (433)
T 3rcy_A 136 PHHPIT-PFWT--------SADMAAESAADCVARGYTAVK----FDPAGPYTL---RGGHMPAMTDISLSVEFCRKIRAA 199 (433)
T ss_dssp TTSCHH-HHTT--------CHHHHHHHHHHHHHTTCSEEE----ECCSCCCBT---TCCBCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccc-cCCC--------CHHHHHHHHHHHHHcCCCEEE----EcCCCCccc---ccCCCcchhhHHHHHHHHHHHHHH
Confidence 221000 0000 111233444444455666555 454421110 0122221 22334555555555
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+ |.+ ..| +|+| +.||.++++++. +.+++|++.|||||++++|++++++|++
T Consensus 200 v---G~d-~~L~vDan-----------------------~~~t~~~A~~~~-~~Le~~~i~~iEeP~~~~~~~~~~~l~~ 251 (433)
T 3rcy_A 200 V---GDK-ADLLFGTH-----------------------GQFTTAGAIRLG-QAIEPYSPLWYEEPVPPDNVGAMAQVAR 251 (433)
T ss_dssp H---TTS-SEEEECCC-----------------------SCBCHHHHHHHH-HHHGGGCCSEEECCSCTTCHHHHHHHHH
T ss_pred h---CCC-CeEEEeCC-----------------------CCCCHHHHHHHH-HHhhhcCCCEEECCCChhhHHHHHHHHh
Confidence 5 644 455 8873 367889999875 5589999999999999999999999999
Q ss_pred hh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HH
Q 011677 352 IC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FI 428 (479)
Q Consensus 352 ~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~ 428 (479)
++ +||++||+. +++++++++++.+++|+| ++|++++||||++++++++|+++|++++ .|+. ++..+ +.
T Consensus 252 ~~~iPIa~dE~~-~~~~~~~~~l~~g~~D~v------~~d~~~~GGit~~~kia~lA~~~gv~~~-~h~~-~s~i~~aa~ 322 (433)
T 3rcy_A 252 AVRIPVATGERL-TTKAEFAPVLREGAAAIL------QPALGRAGGIWEMKKVAAMAEVYNAQMA-PHLY-AGPVEWAAN 322 (433)
T ss_dssp HSSSCEEECTTC-CSHHHHHHHHHTTCCSEE------CCCHHHHTHHHHHHHHHHHHHTTTCEEC-CCCS-SCHHHHHHH
T ss_pred ccCCCEEecCCC-CCHHHHHHHHHcCCCCEE------EeCchhcCCHHHHHHHHHHHHHcCCEEE-ecCC-CCHHHHHHH
Confidence 99 999999986 569999999999999999 9999999999999999999999999975 5653 66554 55
Q ss_pred HHhHhhc
Q 011677 429 ADLSVGL 435 (479)
Q Consensus 429 ~dlAv~~ 435 (479)
+|||.++
T Consensus 323 lhlaaa~ 329 (433)
T 3rcy_A 323 VHFAASI 329 (433)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 5666554
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-42 Score=357.26 Aligned_cols=321 Identities=18% Similarity=0.202 Sum_probs=225.3
Q ss_pred HHHHHHhhhcC-CceeeEEEEEEEecCCCCceEEEEEEeCC-CceeeecCCCCCCCceeeeeeccCCCCccccccHHHHH
Q 011677 33 LFISNHMRKAV-PSVITKIKARQILDSRGIPTVEVDLFTHK-GMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAV 110 (479)
Q Consensus 33 ~~l~~~~~~~~-~~~I~~I~~~~i~ds~g~~~v~V~v~t~~-G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av 110 (479)
|+=--||.... +|+|++|++..+ ...+...+.|+|+|++ |++ |+||+... +. ...+.
T Consensus 14 ~~~~~~~~~~~~~mkIt~v~~~~~-~~~~~~~v~V~v~Td~~Gi~----------G~GE~~~~-------~~---~~~~~ 72 (440)
T 3t6c_A 14 GTENLYFQSMMSNLFITNVKTILT-APGGIDLVVVKIETNEPGLY----------GLGCATFT-------QR---IYAVQ 72 (440)
T ss_dssp ------------CCCEEEEEEEEE-CTTSSCEEEEEEEESSTTCE----------EEEECCCG-------GG---HHHHH
T ss_pred CccchhhhhcCCCCEEEEEEEEEE-CCCCceEEEEEEEEcCCCCE----------EEEeeccC-------CC---HHHHH
Confidence 33344676643 689999999876 3323368999999999 994 99997531 22 23445
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccc
Q 011677 111 KNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVP 190 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp 190 (479)
..|++.|+|.|+|+||.+.+++|+.|.+.. .+..+.+..+|++|||+||||++||.+|+|||+|||| ..+.++|+
T Consensus 73 ~~i~~~l~p~LiG~dp~~ie~i~~~~~~~~-~~~~g~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~~- 147 (440)
T 3t6c_A 73 SAIDEYLAPFLIGKDPARIEDIWQSAAVSG-YWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGG---KCRDGIAL- 147 (440)
T ss_dssp HHHHTTHHHHHTTCCTTCHHHHHHHHHHTT-SCCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSCSSEEE-
T ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhc-ccCCCcchhhHHHHHHHHHHHHHHHHcCCcHHHHcCC---CCCCeeEE-
Confidence 567777999999999999999999998632 1222335568999999999999999999999999998 33455554
Q ss_pred eEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCc-----------ccCCCCCCC---
Q 011677 191 AFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGC-----------NVGEDGGLA--- 256 (479)
Q Consensus 191 ~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~-----------~vg~~G~~~--- 256 (479)
|+.+++. +. +...+++.+...++|+++| .|.|.... .+..+.++.
T Consensus 148 -y~~~~~~-------~~---------e~~~~~a~~~~~~Gf~~~K----~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~ 206 (440)
T 3t6c_A 148 -YVHTDGA-------DE---------VEVEDSARAKMEEGYQYIR----CQMGMYGGAGTDDLRLIANRMVKAKNIQPKR 206 (440)
T ss_dssp -EEEECCS-------SH---------HHHHHHHHHHHHTTCSEEE----ECSSSSTTCCBCCHHHHSSCBCCCSSCCCCC
T ss_pred -EEECCCC-------CH---------HHHHHHHHHHHHcCCCEEE----EeeccCCcccccccccccccccccccccccc
Confidence 6543321 11 1234445555556676665 45542210 000000010
Q ss_pred ------CC--------CCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHH
Q 011677 257 ------PN--------ISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEM 321 (479)
Q Consensus 257 ------~~--------~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~ 321 (479)
|. ++.+.+.++.||+++ |.+ ..| +|+| +.||.++++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~---G~d-~~L~vDaN-----------------------~~~~~~~A~~~ 259 (440)
T 3t6c_A 207 SPRTKAPGIYFDPEAYAKSIPRLFDHLRNKL---GFS-VELLHDAH-----------------------ERITPINAIHM 259 (440)
T ss_dssp CCSSCCSSEECCHHHHHHHHHHHHHHHHHHH---CSS-SEEEEECT-----------------------TCSCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHhc---CCC-CeEEEECC-----------------------CCCCHHHHHHH
Confidence 00 122345555565555 644 456 8883 36788999987
Q ss_pred HHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHH
Q 011677 322 YKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEA 400 (479)
Q Consensus 322 ~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea 400 (479)
. +.++++++.|||||++++|++++++|++++ +||++||+.. ++++++++++.+++|++ ++|++++||||++
T Consensus 260 ~-~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~~~-~~~~~~~~i~~~a~d~v------~~k~~~~GGit~~ 331 (440)
T 3t6c_A 260 A-KALEPYQLFFLEDPVAPENTEWLKMLRQQSSTPIAMGELFV-NVNEWKPLIDNKLIDYI------RCHISSIGGITPA 331 (440)
T ss_dssp H-HHTGGGCCSEEECSSCGGGGGGHHHHHHHCCSCEEECTTCC-SHHHHHHHHHTTCCSEE------CCCGGGGTSHHHH
T ss_pred H-HHhhhcCCCEEECCCChhhHHHHHHHHhhcCCCEEeCcccC-CHHHHHHHHHcCCccce------eechhhhCCHHHH
Confidence 5 457999999999999999999999999999 9999999865 59999999999999999 9999999999999
Q ss_pred HHHHHHHhhCCCeEEEecCCC-CCch--hHHHHhHhhcC
Q 011677 401 IEVVKLANDVPWGVVISHRSG-ETED--SFIADLSVGLA 436 (479)
Q Consensus 401 ~~i~~~A~~~g~~~~v~h~~g-et~d--~~~~dlAv~~~ 436 (479)
++++++|+++|+++++ |++. ++.. ++.+||+.++.
T Consensus 332 ~~ia~~A~~~gi~~~~-h~~~~~s~Ig~aa~~hlaaa~p 369 (440)
T 3t6c_A 332 KKIAIYSELNGVRTAW-HSPGDISPIGVCANMHLDLSSP 369 (440)
T ss_dssp HHHHHHHHHTTCEECC-CCSSSSCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCEEEe-ccCCCccHHHHHHHHHHHHhCC
Confidence 9999999999999755 5443 5544 45677777664
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=359.06 Aligned_cols=312 Identities=15% Similarity=0.159 Sum_probs=228.8
Q ss_pred cCCceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhh
Q 011677 42 AVPSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEAL 121 (479)
Q Consensus 42 ~~~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~L 121 (479)
.+||+|++|+...+- .++..+.|+|+|++|++ |+||+... +. ...+...|++.++|.|
T Consensus 21 ~~~mkIt~v~~~~~~--~~~~~v~V~v~td~G~~----------G~GE~~~~-------~~---~~~~~~~i~~~l~p~L 78 (425)
T 3vcn_A 21 QSMLKIIDAKVIVTC--PGRNFVTLKITTEDGIT----------GVGDATLN-------GR---ELSVVSFLQDHMVPSL 78 (425)
T ss_dssp --CCBEEEEEEEEEC--SSSCEEEEEEEETTSCE----------EEEECCCT-------TC---HHHHHHHHHHTTHHHH
T ss_pred CCCCEEEEEEEEEEc--CCCcEEEEEEEECCCCE----------EEEeccCC-------CC---hHHHHHHHHHHHHHHh
Confidence 348899999998773 34578999999999994 99997431 11 2344556777799999
Q ss_pred cCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccC
Q 011677 122 VGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHA 201 (479)
Q Consensus 122 iG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~ 201 (479)
+|+||.+.+++|+.|.+... +..+.+..+|++|||+||||+.||.+|+|||+|||| ..+.++|+ |+.+++.
T Consensus 79 iG~dp~~ie~i~~~~~~~~~-~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~~--y~~~~~~--- 149 (425)
T 3vcn_A 79 IGRDAHQIEDIWQFFYRGSY-WRGGPVAMTALAAVDMALWDIKGKVAGLPVYQLLGG---ACRTGVTV--YGHANGE--- 149 (425)
T ss_dssp TTCBTTCHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTC---CSSSSEEE--EEEEEES---
T ss_pred CCCChhhHHHHHHHHHhhcc-cCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCC---CCCCeeeE--EEeCCCC---
Confidence 99999999999999986321 222345568999999999999999999999999998 33455555 5543321
Q ss_pred CCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCC----cccCCCCC-CCC------C---------CCc
Q 011677 202 GNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHG----CNVGEDGG-LAP------N---------ISS 261 (479)
Q Consensus 202 ~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~----~~vg~~G~-~~~------~---------~~~ 261 (479)
+. +...+++.+...++|+++| .|.|... .+++..+. +.+ . ++.
T Consensus 150 ----~~---------e~~~~~a~~~~~~Gf~~iK----lKvg~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~ 212 (425)
T 3vcn_A 150 ----TI---------EDTIAEAVKYKAMGYKAIR----LQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNS 212 (425)
T ss_dssp ----SH---------HHHHHHHHHHHHTTCSEEE----EEECCTTCSCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTT
T ss_pred ----CH---------HHHHHHHHHHHHcCCCEEE----EeecCccccccccccccccccCcccccccccccccchhHHHH
Confidence 11 1234455555556676665 5655310 00000000 111 1 234
Q ss_pred hHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCc
Q 011677 262 IREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDK 340 (479)
Q Consensus 262 ~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~ 340 (479)
+.+.++.||+++ |.+ ..| +|+| +.||.++++++. +.++++++.|||||+++
T Consensus 213 d~e~v~avR~a~---G~d-~~l~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEqP~~~ 264 (425)
T 3vcn_A 213 VPKLFERAREVL---GWD-VHLLHDVH-----------------------HRLTPIEAARLG-KDLEPYRLFWLEDSVPA 264 (425)
T ss_dssp THHHHHHHHHHH---CSS-SEEEEECT-----------------------TCCCHHHHHHHH-HHHGGGCCSEEECCSCC
T ss_pred HHHHHHHHHHHc---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCCh
Confidence 566777777766 644 355 8883 367889999875 55899999999999999
Q ss_pred cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 341 EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 341 ~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
+|++++++|++++ +||++||+.. ++++++++++.+++|+| ++|++++||||++++++++|+++|+++++ |+
T Consensus 265 ~d~~~~~~l~~~~~iPIa~dE~~~-~~~~~~~~i~~~a~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~-h~ 336 (425)
T 3vcn_A 265 ENQAGFRLIRQHTTTPLAVGEIFA-HVWDAKQLIEEQLIDYL------RATVLHAGGITNLKKIAAFADLHHVKTGC-HG 336 (425)
T ss_dssp SSTTHHHHHHHHCCSCEEECTTCC-SGGGTHHHHHTTCCSEE------CCCTTTTTHHHHHHHHHHHHGGGTCEECC-CC
T ss_pred hhHHHHHHHHhcCCCCEEeCCCcC-CHHHHHHHHHcCCCCeE------ecChhhcCCHHHHHHHHHHHHHcCCEEee-cc
Confidence 9999999999999 9999999864 59999999999999999 99999999999999999999999999755 54
Q ss_pred CC-CCch--hHHHHhHhhcCC
Q 011677 420 SG-ETED--SFIADLSVGLAS 437 (479)
Q Consensus 420 ~g-et~d--~~~~dlAv~~~~ 437 (479)
.. ++.. ++.+|||.++..
T Consensus 337 ~~~~s~ig~aA~~hlaaa~pn 357 (425)
T 3vcn_A 337 ATDLSPVTMAAALHFDMSITN 357 (425)
T ss_dssp CTTSCHHHHHHHHHHHHTCSC
T ss_pred CCcccHHHHHHHHHHHHhCCC
Confidence 43 4544 456677666543
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-42 Score=354.94 Aligned_cols=305 Identities=14% Similarity=0.153 Sum_probs=220.1
Q ss_pred HhhhcCCceeeEEEEEEEecCCCC-------------------------------ceEEEEEEeCCCceeeecCCCCCCC
Q 011677 38 HMRKAVPSVITKIKARQILDSRGI-------------------------------PTVEVDLFTHKGMFRASVPSGDPSG 86 (479)
Q Consensus 38 ~~~~~~~~~I~~I~~~~i~ds~g~-------------------------------~~v~V~v~t~~G~~~~~~ps~~~~G 86 (479)
||.+-++++|++|+++.+.-+... .+|+|+|+|++|++ |
T Consensus 19 yFqsm~~~~I~~i~~~~v~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~r~VlVri~td~G~~----------G 88 (412)
T 4h1z_A 19 YFQSMMSDRVKKIESFTLTLPRETPYLGKPRPGEEPNGRGYLVRKANRTVYPTFDRSVLVRIETENGAV----------G 88 (412)
T ss_dssp ------CCCEEEEEEEEEECC------------CCCCTTSEEECTTTCCEEESSCEEEEEEEEETTCCE----------E
T ss_pred HHHhhccceeeEEEEEEEecccCCccccccccccccccccceeeccCcccCCCCCCcEEEEEEECCCCE----------E
Confidence 555421238999999988543221 24899999999994 9
Q ss_pred ceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc-cCCCCchhhhHHHHHHHHHHHHHH
Q 011677 87 MYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK-TEKKGELGANAILAVSIAACKAGA 165 (479)
Q Consensus 87 ~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~-~~~~~~~g~~A~~AvsiAl~da~a 165 (479)
|||+... .+...+.+.|++.|+|.|+|+||.+++.||+.|.+... ....+++..+|++|||+||||+.|
T Consensus 89 ~GE~~~~----------~~~~~~~~~i~~~lap~liG~dp~~~~~i~~~l~~~~~~~~~~~g~~~~A~saiD~ALwDl~g 158 (412)
T 4h1z_A 89 WGETYGL----------VAPRATMEIIDDLLADFTIGRDPFDAAAIHDDLYDLMRVRGYTGGFYVDALAAIDIALWDLAG 158 (412)
T ss_dssp EEEEECS----------SCHHHHHHHHHHTHHHHHTTSCGGGHHHHHHHHHTTTGGGTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCC----------CCHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 9998542 12345566788889999999999999999999986432 222344567899999999999999
Q ss_pred HhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 011677 166 AEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAH 245 (479)
Q Consensus 166 k~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~ 245 (479)
|.+|+|||++||| ..+.++|+ |+. |. .. +.. ....+.+.+...++|+.+| .|.|
T Consensus 159 K~~g~Pl~~LLGG---~~~~~v~~--y~s--~~-~~----~~~--------~~~~~~a~~~~~~G~~~~K----~k~g-- 212 (412)
T 4h1z_A 159 KLAGLPVCKLLGG---QRRDRIAA--YIS--GL-PE----DTR--------AKRAELAAAWQAKGFSSFK----FASP-- 212 (412)
T ss_dssp HHHTCBGGGGTTC---CCCSEEEE--EEC--CC-CC----SSH--------HHHHHHHHHHHHTTCCEEE----EEGG--
T ss_pred HHcCCCHHHhcCC---CCCceEEE--Eec--cC-CC----CcH--------HHHHHHHHHHHhcCcceec----cccc--
Confidence 9999999999998 43445544 542 11 00 000 1112233333334444443 2321
Q ss_pred CcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHH
Q 011677 246 GCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKE 324 (479)
Q Consensus 246 ~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ 324 (479)
...+.+.+.++.+|+++ |.+ .++ +|+| +.||.++++++. +
T Consensus 213 -----------~~~~~~~~~v~~vR~~~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~ 253 (412)
T 4h1z_A 213 -----------VADDGVAKEMEILRERL---GPA-VRIACDMH-----------------------WAHTASEAVALI-K 253 (412)
T ss_dssp -----------GCTTCHHHHHHHHHHHH---CSS-SEEEEECC-----------------------SCCCHHHHHHHH-H
T ss_pred -----------cchhhHHHHHHHHHhcc---CCe-EEEEeccc-----------------------cCCCHHHHHHHH-H
Confidence 11234567787787777 644 456 8883 367899999875 4
Q ss_pred HHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHH
Q 011677 325 LCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEV 403 (479)
Q Consensus 325 ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i 403 (479)
.+++|++.|||||++++|++++++|++++ +||++||+.. ++++++++++.+++|++ ++|+.+ ||||+++++
T Consensus 254 ~l~~~~l~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~-~~~~~~~~i~~~a~div------~~d~~~-GGit~~~ki 325 (412)
T 4h1z_A 254 AMEPHGLWFAEAPVRTEDIDGLARVAASVSTAIAVGEEWR-TVHDMVPRVARRALAIV------QPEMGH-KGITQFMRI 325 (412)
T ss_dssp HHGGGCEEEEECCSCTTCHHHHHHHHHHCSSEEEECTTCC-SHHHHHHHHHTTCCSEE------CCCHHH-HHHHHHHHH
T ss_pred hhcccccceecCCCCccchHHHHHHHhhcCCccccCCccc-chHhHHHHHHcCCCCEE------EecCCC-CChHHHHHH
Confidence 58999999999999999999999999999 9999999865 59999999999999999 999986 999999999
Q ss_pred HHHHhhCCCeEEEecCCCCCchh--HHHHhHhhcC
Q 011677 404 VKLANDVPWGVVISHRSGETEDS--FIADLSVGLA 436 (479)
Q Consensus 404 ~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~~~ 436 (479)
+++|+++|++++ .|+..++... +.+|++.++.
T Consensus 326 a~~A~~~gi~v~-~h~~~~~~i~~aa~lhl~aa~~ 359 (412)
T 4h1z_A 326 GAYAHVHHIKVI-PHATIGAGIFLAASLQASAALA 359 (412)
T ss_dssp HHHHHHTTCEEC-CCCCSSCSHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCcEE-ecCCcchHHHHHHHHHHHHhCC
Confidence 999999999975 4655566444 5566666653
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=357.63 Aligned_cols=293 Identities=15% Similarity=0.144 Sum_probs=228.1
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. .+.+ +++++|+|+|++|++ |+||+.++.. +.|.++++.+++.
T Consensus 19 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~----------G~GE~~~~~~---~~~~~e~~~~~~~ 85 (386)
T 1wue_A 19 HMNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQ----------GFGELVAFEQ---PDYVQETLVTERF 85 (386)
T ss_dssp CCCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECCCSS---TTSSSCCHHHHHH
T ss_pred cCEEEEEEEEEEecccCCCccccceEEecCcEEEEEEEECCCCE----------EEEEeecCCC---CcccCCcHHHHHH
Confidence 6899999998772 3332 357999999999984 9999876532 4688999999988
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.+++.++|.|+|+|+.+++++|+.|..+.+ +.+|++|||+||||+.||..|+|||++||| . +.++|++.
T Consensus 86 ~i~~~l~p~l~G~d~~~~~~l~~~l~~~~g-------~~~A~~aid~AlwDl~~k~~g~Pl~~llGg---~-~~~v~~~~ 154 (386)
T 1wue_A 86 IIQQHLIPLLLTEAIEQPQEVSTIFEEVKG-------HWMGKAALETAIWDLYAKRQQKSLTEFFGP---T-RRKIPVGI 154 (386)
T ss_dssp HHHHTHHHHHTTSCCCSTHHHHHHGGGSCS-------CHHHHHHHHHHHHHHHHHHTTSBGGGGSSS---C-CSEEECCE
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHccC-------chHHHHHHHHHHHHHHHHHhCCcHHHHhCC---C-CCeeEeeE
Confidence 898889999999999999999998865432 157999999999999999999999999998 2 45677654
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
.++.+ .+.++ ..+++.+...++|+.+| .|. | + +.+.+.++.||+
T Consensus 155 --~~g~~------~~~~~---------~~~~a~~~~~~G~~~~K----iKv-------g------~--~~d~~~v~avr~ 198 (386)
T 1wue_A 155 --SLGIQ------EDLPQ---------LLKQVQLAVEKGYQRVK----LKI-------R------P--GYDVEPVALIRQ 198 (386)
T ss_dssp --EECCC------SCHHH---------HHHHHHHHHHTTCSCEE----EEC-------B------T--TBSHHHHHHHHH
T ss_pred --EecCC------CCHHH---------HHHHHHHHHHhhhheEE----Eee-------C------c--HHHHHHHHHHHH
Confidence 22111 01222 23455555556666655 342 2 1 234667777777
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
++. + .++ +|+|. .||.+++ ++ .+.+++|+|.|||||++++|+++|++|+
T Consensus 199 a~~----~-~~l~vDaN~-----------------------~~~~~~a-~~-~~~l~~~~i~~iEqP~~~~d~~~~~~l~ 248 (386)
T 1wue_A 199 HFP----N-LPLMVDANS-----------------------AYTLADL-PQ-LQRLDHYQLAMIEQPFAADDFLDHAQLQ 248 (386)
T ss_dssp HCT----T-SCEEEECTT-----------------------CCCGGGH-HH-HHGGGGSCCSCEECCSCTTCSHHHHHHH
T ss_pred hCC----C-CeEEEeCCC-----------------------CCCHHHH-HH-HHHHHhCCCeEEeCCCCcccHHHHHHHH
Confidence 651 2 356 99842 4566777 66 5678999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIA 429 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~ 429 (479)
+++ +||++||+..+ +++++++++.+++|++ ++|++++||||++++++++|+++|+++|++|+. |+..+..+
T Consensus 249 ~~~~ipIa~dE~~~~-~~~~~~~i~~~a~d~i------~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~~-es~i~~aa 320 (386)
T 1wue_A 249 RELKTRICLDENIRS-LKDCQVALALGSCRSI------NLKIPRVGGIHEALKIAAFCQENDLLVWLGGMF-ESGVGRAL 320 (386)
T ss_dssp TTCSSCEEECTTCCS-HHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEECCCC-CCHHHHHH
T ss_pred HhcCCCEEeCCccCC-HHHHHHHHHcCCCCEE------EEchhhhCCHHHHHHHHHHHHHCCCeEEECCCc-ccHHHHHH
Confidence 999 99999998654 9999999999999999 999999999999999999999999999887764 67665555
Q ss_pred HhHhh
Q 011677 430 DLSVG 434 (479)
Q Consensus 430 dlAv~ 434 (479)
.++++
T Consensus 321 ~~hla 325 (386)
T 1wue_A 321 NLQFA 325 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=352.57 Aligned_cols=299 Identities=17% Similarity=0.132 Sum_probs=228.1
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.+ +..+.|+|+|++|++ |+||+.++.. +.|++++...+...
T Consensus 6 ~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~~---~~y~~e~~~~~~~~ 72 (382)
T 3dgb_A 6 SAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIE----------GLGESTTIGG---LAYGNESPDSIKTN 72 (382)
T ss_dssp TBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEEECSTT---TTSSSCCHHHHHHH
T ss_pred CeeeEEEEEEEeeccCCCeEecCeEEeeeeEEEEEEEECCCCE----------EEEecccCCC---CccCCCCHHHHHHH
Confidence 469999998873 3333 357899999999994 9999987532 45788888888888
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
|++.++|.|+|+||.+.+++|+.|.+... +. .+|++|||+||||+.||..|+|||++||| ..+.++|+ |
T Consensus 73 i~~~l~p~liG~d~~~~~~~~~~l~~~~~----g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg---~~r~~v~~--~ 141 (382)
T 3dgb_A 73 IDRFVAPLLIGQDASNINAAMLRLEQSIR----GN--TFAKSGIESALLDAQGKRLGLPVSELLGG---RVRDALPV--A 141 (382)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHCC----SC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CSCSEEEB--C
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHHhc----Cc--hHHHHHHHHHHHHHHHHHcCCCHHHHhCC---CCCCeeeE--E
Confidence 88889999999999999999999986321 11 57999999999999999999999999998 33456665 4
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHH-HHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGS-ETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~-e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
..++.| +. ...++++.+... .+|+.+| .|.|. .+.+.+.+.++.||+
T Consensus 142 ~t~~~~-------~~---------~~~~~~~~~~~~~~G~~~~K----iKvg~------------~~~~~d~~~v~avR~ 189 (382)
T 3dgb_A 142 WTLASG-------DT---------AKDIAEAQKMLDLRRHRIFK----LKIGA------------GEVDRDLAHVIAIKK 189 (382)
T ss_dssp EEECSS-------CH---------HHHHHHHHHHHHTTSCSEEE----EECCS------------SCHHHHHHHHHHHHH
T ss_pred EEecCC-------Ch---------HHHHHHHHHHHHhCCCCEEE----EeeCC------------CCHHHHHHHHHHHHH
Confidence 333222 00 112334444333 2455444 44331 112345666777777
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
++ |.+ ..+ +|+| +.||.++++++. +.+++|++.|||||++++|++++++|+
T Consensus 190 a~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~ 241 (382)
T 3dgb_A 190 AL---GDS-ASVRVDVN-----------------------QAWDEAVALRAC-RILGGNGIDLIEQPISRNNRAGMVRLN 241 (382)
T ss_dssp HH---GGG-SEEEEECT-----------------------TCBCHHHHHHHH-HHHHTTTCCCEECCBCTTCHHHHHHHH
T ss_pred Hc---CCC-CeEEEeCC-----------------------CCCCHHHHHHHH-HHHhhcCcCeeeCCCCccCHHHHHHHH
Confidence 66 533 345 8983 367889999875 558999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--H
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--F 427 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~ 427 (479)
+++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|+ .|+..+ +
T Consensus 242 ~~~~ipIa~dE~~~-~~~~~~~~~~~~~~d~v------~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~-~es~ig~aa 313 (382)
T 3dgb_A 242 ASSPAPIMADESIE-CVEDAFNLAREGAASVF------ALKIAKNGGPRATLRTAAIAEAAGIGLYGGTM-LEGGIGTLA 313 (382)
T ss_dssp HHCSSCEEESTTCS-SHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHHTCEEEECCS-CCCHHHHHH
T ss_pred HhCCCCEEeCCCcC-CHHHHHHHHHcCCCCEE------EecccccCCHHHHHHHHHHHHHcCCeEeecCC-CccHHHHHH
Confidence 999 9999999865 59999999999999999 99999999999999999999999999977665 466554 5
Q ss_pred HHHhHhhc
Q 011677 428 IADLSVGL 435 (479)
Q Consensus 428 ~~dlAv~~ 435 (479)
.+||+.++
T Consensus 314 ~~hlaaa~ 321 (382)
T 3dgb_A 314 SAHAFLTL 321 (382)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHcC
Confidence 55665554
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=351.51 Aligned_cols=306 Identities=16% Similarity=0.114 Sum_probs=223.5
Q ss_pred CceeeEEEEEEEecCC----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHH
Q 011677 44 PSVITKIKARQILDSR----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISE 119 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p 119 (479)
+|+|++|+++.+--.. .++.+.|+|+|++|++ |+||+. .++++..++..+.+.++|
T Consensus 2 ~MkI~~i~~~~~~~p~~~~~~~~~~~V~v~td~G~~----------G~GE~~----------~~~~~~~~~~~~~~~l~p 61 (393)
T 4dwd_A 2 SLKIAKVEALSVAMGDGTGWMPTSAFVRITAEDGTV----------GWGEAS----------PMLGGIASLGVVARDIAP 61 (393)
T ss_dssp CCBEEEEEEEEEECCC-----CEEEEEEEEETTSCE----------EEEEEC----------CGGGGHHHHHHHHHHTHH
T ss_pred CCEEEEEEEEEEcCCCcccccceEEEEEEEECCCCE----------EEEEcc----------CcHHHHHHHHHHHHHHHH
Confidence 4799999999985330 0457999999999994 999975 133455553443455999
Q ss_pred hhcCCCCCCHHHHHHHHHhhh-ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCC
Q 011677 120 ALVGMDPILQSQIDQAMIDLD-KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGG 198 (479)
Q Consensus 120 ~LiG~d~~~~~~id~~l~~~~-~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG 198 (479)
.|+|+||.+.+++|+.|.+.. ..+ .+++..+|++|||+||||+.||.+|+|||++||| ..+.+ +|+|..++|+
T Consensus 62 ~liG~d~~~~e~~~~~l~~~~~~~g-~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg---~~r~~--v~~y~s~~g~ 135 (393)
T 4dwd_A 62 FLEGQEVLDHAVLLDRMMHRLVKLG-PEGIATAALAACDIALWDLKGKLLGQPIYKLLGG---AWRTR--LPCYSSIGGN 135 (393)
T ss_dssp HHTTSBGGGHHHHHHHHHHHTGGGC-CTTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSCSE--EEEEEEECCC
T ss_pred HHCCCCcccHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCC---CCCCc--eeeEEecCcc
Confidence 999999999999999998632 222 2346678999999999999999999999999998 33344 5556665332
Q ss_pred ccCCCcccccceeeccCCCCcHHHH-HHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcC
Q 011677 199 KHAGNNLAIQDIMILPIGASSFGEA-LQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG 277 (479)
Q Consensus 199 ~~~~~~l~~~e~~i~p~~~~~~~ea-~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g 277 (479)
... + . +...+++ .+...++|+.+| .|.|..... ...+.+.+.+.++.||+++ |
T Consensus 136 ~~~----~-~--------e~~~~~a~~~~~~~G~~~~K----lKvG~~~~~------~~~~~~~d~~~v~avR~a~---g 189 (393)
T 4dwd_A 136 AAR----S-V--------DEVVREVARRVEAEQPAAVK----IRWDGDRTR------CDVDIPGDIAKARAVRELL---G 189 (393)
T ss_dssp SSS----C-H--------HHHHHHHHHHHHHHCCSEEE----EECCCCTTC------CSCCHHHHHHHHHHHHHHH---C
T ss_pred CCC----C-H--------HHHHHHHHHHHHHcCCCEEE----EccCCCCcc------cccCHHHHHHHHHHHHHHh---C
Confidence 100 0 1 1223344 444455666655 454421000 0012334455566666555 6
Q ss_pred CCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hh
Q 011677 278 IPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQ 355 (479)
Q Consensus 278 ~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~ 355 (479)
.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|++++ +|
T Consensus 190 ~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEqP~~~~d~~~~~~l~~~~~iP 244 (393)
T 4dwd_A 190 PD-AVIGFDAN-----------------------NGYSVGGAIRVG-RALEDLGYSWFEEPVQHYHVGAMGEVAQRLDIT 244 (393)
T ss_dssp TT-CCEEEECT-----------------------TCCCHHHHHHHH-HHHHHTTCSEEECCSCTTCHHHHHHHHHHCSSE
T ss_pred CC-CeEEEECC-----------------------CCCCHHHHHHHH-HHHHhhCCCEEECCCCcccHHHHHHHHhhCCCC
Confidence 44 456 8883 367889999875 558999999999999999999999999999 99
Q ss_pred hhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHHHhHh
Q 011677 356 VVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSV 433 (479)
Q Consensus 356 I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~~dlAv 433 (479)
|++||+.. ++++++++++.+ +|++ ++|++++||||++++++++|+++|+++++ |+. ++..+ +.+|||.
T Consensus 245 Ia~dE~~~-~~~~~~~~i~~~-~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~-h~~-~~~i~~aa~~hlaa 314 (393)
T 4dwd_A 245 VSAGEQTY-TLQALKDLILSG-VRMV------QPDIVKMGGITGMMQCAALAHAHGVEFVP-HQT-QPGVGHFANIHVLS 314 (393)
T ss_dssp EEBCTTCC-SHHHHHHHHHHT-CCEE------CCCTTTTTHHHHHHHHHHHHHHHTCEECC-CCC-CSSHHHHHHHHHHH
T ss_pred EEecCCcC-CHHHHHHHHHcC-CCEE------EeCccccCCHHHHHHHHHHHHHcCCEEee-cCC-CcHHHHHHHHHHHH
Confidence 99999864 599999999999 9999 99999999999999999999999999865 555 56554 5556665
Q ss_pred hcC
Q 011677 434 GLA 436 (479)
Q Consensus 434 ~~~ 436 (479)
++.
T Consensus 315 a~p 317 (393)
T 4dwd_A 315 TLM 317 (393)
T ss_dssp TCT
T ss_pred hCC
Confidence 543
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=351.91 Aligned_cols=310 Identities=17% Similarity=0.158 Sum_probs=225.6
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
+|+|++|++..+- ..+...+.|+|+|++|++ |+||+.. .+. ...+...|++.++|.|+|
T Consensus 5 ~mkIt~v~~~~~~-~~~~~~~~V~v~td~G~~----------G~GE~~~-------~~~---~~~~~~~i~~~l~p~liG 63 (401)
T 3sbf_A 5 ETIISDIHCIITK-PDRHNLITVVVETNEGVT----------GFGCATF-------QQR---PLAVKTMVDEYLKPILIG 63 (401)
T ss_dssp CCBEEEEEEEEEC-SSSSCEEEEEEEETTSCE----------EEEECCC-------TTS---HHHHHHHHHHTHHHHHTT
T ss_pred CeEEEEEEEEEEc-CCCceEEEEEEEeCCCCE----------EEEcccc-------CCC---HHHHHHHHHHHHHHHHcC
Confidence 6799999998773 223368999999999994 9999753 122 234455677779999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+||.+.+++|+.|.+.. .+..+.+..+|++|||+||||+.||.+|+|||+|||| ..+.++|+ |+.++++
T Consensus 64 ~d~~~~e~~~~~~~~~~-~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~~--y~~~~~~----- 132 (401)
T 3sbf_A 64 KNANNIEDLWQMMMVNA-YWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGG---KSRDAIPV--YTHATSD----- 132 (401)
T ss_dssp SBTTCHHHHHHHHHHTT-SSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTC---CSSSSEEE--EEEEEES-----
T ss_pred CChhhHHHHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHhHhHhCCcHHHHhCC---CcCCeeeE--EEeCCCC-----
Confidence 99999999999998632 1222345578999999999999999999999999998 33455554 6543321
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccC--------CCCCCCCC---CCchHHHHHHHHHH
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVG--------EDGGLAPN---ISSIREGLDLVKEA 272 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg--------~~G~~~~~---~~~~~~~l~~v~~a 272 (479)
+. +...+++.+...++|+.+| .|.|....... ..|.+... ++.+.+.++.||++
T Consensus 133 --~~---------e~~~~~a~~~~~~G~~~~K----~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a 197 (401)
T 3sbf_A 133 --TM---------EGIYDLVEGFLEKGYKHIR----CQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREK 197 (401)
T ss_dssp --SH---------HHHHHHHHHHHHTTCCEEE----EEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHH
T ss_pred --CH---------HHHHHHHHHHHHcCCCEEE----EeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 11 1234444445555676655 56553211000 00000000 12234555556655
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|++
T Consensus 198 ~---G~d-~~l~vDan-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEqP~~~~~~~~~~~l~~ 249 (401)
T 3sbf_A 198 Y---GNQ-FHILHDVH-----------------------ERLFPNQAIQFA-KEVEQYKPYFIEDILPPNQTEWLDNIRS 249 (401)
T ss_dssp H---TTS-SEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCCSCEECSSCTTCGGGHHHHHT
T ss_pred c---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCChhHHHHHHHHHh
Confidence 5 644 456 8883 367889999875 5589999999999999999999999999
Q ss_pred hh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCC-CCch--hH
Q 011677 352 IC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG-ETED--SF 427 (479)
Q Consensus 352 ~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~g-et~d--~~ 427 (479)
++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|++++ .|++. ++.. ++
T Consensus 250 ~~~iPIa~dE~~~-~~~~~~~~i~~~~~d~v------~~k~~~~GGit~~~kia~~A~~~gi~~~-~h~~~~~s~i~~aA 321 (401)
T 3sbf_A 250 QSSVSLGLGELFN-NPEEWKSLIANRRIDFI------RCHVSQIGGITPALKLGHLCQNFGVRIA-WHCAPDMTPIGAAV 321 (401)
T ss_dssp TCCCCEEECTTCC-SHHHHHHHHHTTCCSEE------CCCGGGGTSHHHHHHHHHHHHHHTCEEC-CCCCTTSCHHHHHH
T ss_pred hCCCCEEeCCccC-CHHHHHHHHhcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCEEE-ecCCcccchHHHHH
Confidence 99 9999999864 59999999999999999 9999999999999999999999999975 56554 5544 45
Q ss_pred HHHhHhhcC
Q 011677 428 IADLSVGLA 436 (479)
Q Consensus 428 ~~dlAv~~~ 436 (479)
.+|||.++.
T Consensus 322 ~~hlaaa~p 330 (401)
T 3sbf_A 322 NTHLNVHLH 330 (401)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHhCC
Confidence 677776653
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-42 Score=350.29 Aligned_cols=296 Identities=19% Similarity=0.199 Sum_probs=231.7
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.+ .+++.|+|+|++|+ +|+||+.++ +.|.+++..++...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~----------~G~GE~~~~-----~~~~~~~~~~~~~~ 65 (366)
T 1tkk_A 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGA----------VGWGEAPPT-----LVITGDSMDSIESA 65 (366)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSC----------EEEEEECCC-----TTTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEEccccCCEEecCeeEEEeeEEEEEEEECCCC----------EEEEEecCC-----CCcCCCCHHHHHHH
Confidence 689999988772 2333 35799999999998 499998764 35778888888888
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+++.++|.|+|+|+.+++++|+.|.+... + ..+|++|||+||||+.||..|+|||++||| . +.++|++
T Consensus 66 l~~~l~~~l~g~~~~~~~~~~~~l~~~~~----~--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~-~~~v~~~-- 133 (366)
T 1tkk_A 66 IHHVLKPALLGKSLAGYEAILHDIQHLLT----G--NMSAKAAVEMALYDGWAQMCGLPLYQMLGG---Y-RDTLETD-- 133 (366)
T ss_dssp HHHTHHHHHTTCBGGGHHHHHHHHHHSSS----S--CHHHHHHHHHHHHHHHHHHTTSBHHHHHTC---C-CSEEEBC--
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHhc----C--CHHHHHHHHHHHHHHHHHHcCCCHHHHhCC---C-CCceeee--
Confidence 98879999999999999999999875321 1 257999999999999999999999999998 2 4566664
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEA 272 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~a 272 (479)
..++++ +.++ ..+++.+...++|+.+| .|.| . ++.+.+.+.++.||++
T Consensus 134 ~~~~~~-------~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~-----~~~~~d~~~v~avr~a 181 (366)
T 1tkk_A 134 YTVSVN-------SPEE---------MAADAENYLKQGFQTLK----IKVG-------K-----DDIATDIARIQEIRKR 181 (366)
T ss_dssp EEECSC-------CHHH---------HHHHHHHHHHHTCCEEE----EECC-------S-----SCHHHHHHHHHHHHHH
T ss_pred EEecCC-------CHHH---------HHHHHHHHHHcCCCeEE----EEeC-------C-----CCHHHHHHHHHHHHHH
Confidence 333332 1121 24455555555666655 3433 1 1233456666666666
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhh--CCceeeecCCCccCHHHHHHH
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCAD--YPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~--~~i~~iEdP~~~~D~~g~~~L 349 (479)
+ |.+ ..+ +|+| +.||.+++++++. .+++ |++.|||||++++|+++|++|
T Consensus 182 ~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~~~~i~~iEqP~~~~d~~~~~~l 233 (366)
T 1tkk_A 182 V---GSA-VKLRLDAN-----------------------QGWRPKEAVTAIR-KMEDAGLGIELVEQPVHKDDLAGLKKV 233 (366)
T ss_dssp H---CSS-SEEEEECT-----------------------TCSCHHHHHHHHH-HHHHTTCCEEEEECCSCTTCHHHHHHH
T ss_pred h---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HHhhcCCCceEEECCCCcccHHHHHHH
Confidence 6 644 456 8883 3578899998765 5899 999999999999999999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHH
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFI 428 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~ 428 (479)
++++ +||++||+. +++++++++++.+++|++ ++|++++||+|++++++++|+++|++++++|+ .||..+..
T Consensus 234 ~~~~~ipIa~dE~~-~~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~-~es~i~~~ 305 (366)
T 1tkk_A 234 TDATDTPIMADESV-FTPRQAFEVLQTRSADLI------NIKLMKAGGISGAEKINAMAEACGVECMVGSM-IETKLGIT 305 (366)
T ss_dssp HHHCSSCEEECTTC-CSHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHHTCCEEECCS-SCCHHHHH
T ss_pred HhhCCCCEEEcCCC-CCHHHHHHHHHhCCCCEE------EeehhhhcCHHHHHHHHHHHHHcCCcEEecCc-cccHHHHH
Confidence 9999 999999986 569999999999999999 99999999999999999999999999988775 68887766
Q ss_pred HHhHhhc
Q 011677 429 ADLSVGL 435 (479)
Q Consensus 429 ~dlAv~~ 435 (479)
++++++.
T Consensus 306 a~~~laa 312 (366)
T 1tkk_A 306 AAAHFAA 312 (366)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=352.82 Aligned_cols=310 Identities=15% Similarity=0.183 Sum_probs=224.9
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
+|+|++|+...+- .++..+.|+|+|++|++ |+||+... +. ...+...|++.++|.|+|
T Consensus 22 ~mkIt~v~~~~~~--~~~~~v~V~v~td~Gi~----------G~GE~~~~-------~~---~~~~~~~i~~~l~p~LiG 79 (424)
T 3v3w_A 22 SMKIVDAKVIVTC--PGRNFVTLKIVTDQGIY----------GIGDATLN-------GR---EKSVVSYLEDYLIPVLIG 79 (424)
T ss_dssp -CCEEEEEEEEEC--SSSCEEEEEEEETTSCE----------EEEECCCT-------TC---HHHHHHHHHHTHHHHHTT
T ss_pred CCEEEEEEEEEEc--CCCCEEEEEEEECCCCE----------EEEeccCC-------CC---hHHHHHHHHHHHHHHhcC
Confidence 5799999998763 34578999999999994 99997431 11 234455677779999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+||.+++++|+.|.+.. ....+.+..+|++|||+||||+.||.+|+|||+|||| ..+.++|+ |+.+++.
T Consensus 80 ~dp~~ie~i~~~~~~~~-~~~~g~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~~--y~~~~~~----- 148 (424)
T 3v3w_A 80 RDPQQIEDIWQFFYRGA-YWRRGPVGMTALAAIDVALWDIKAKLANMPLYQLLGG---KSRERILS--YTHANGK----- 148 (424)
T ss_dssp SCTTCHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHTC---CSCSSEEE--EEEEEES-----
T ss_pred CChhhHHHHHHHHHhcc-ccCCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---cCCCceeE--EEeCCCC-----
Confidence 99999999999998632 1222345568999999999999999999999999998 33455555 5543321
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCC----cccCCC-CCCC------CC---------CCchH
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHG----CNVGED-GGLA------PN---------ISSIR 263 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~----~~vg~~-G~~~------~~---------~~~~~ 263 (479)
+. +...+++.+...++|+++| .|.|... .+.... ..+. |. ++.+.
T Consensus 149 --~~---------e~~~~~a~~~~~~Gf~~iK----lKvG~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~ 213 (424)
T 3v3w_A 149 --DL---------DSTLEAVRKAKDKGYKAIR----VQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIP 213 (424)
T ss_dssp --SH---------HHHHHHHHHHHHTTCSEEE----EEECCTTCSCCTTCC-----CCSCCBSSCCEEEECHHHHHHHHH
T ss_pred --CH---------HHHHHHHHHHHHcCCCEEE----EeccCccccccccccccccccccccccccccccccchhHHHHHH
Confidence 11 1234455555556676665 5655310 000000 0011 11 12234
Q ss_pred HHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccC
Q 011677 264 EGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED 342 (479)
Q Consensus 264 ~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D 342 (479)
+.++.||+++ |.+ ..| +|+| +.||.++++++. +.++++++.|||||++++|
T Consensus 214 e~v~avR~av---G~d-~~l~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEqP~~~~d 265 (424)
T 3v3w_A 214 DVFAAVRKEF---GPD-IHLLHDVH-----------------------HRLTPIEAARLG-KALEPYHLFWMEDAVPAEN 265 (424)
T ss_dssp HHHHHHHHHH---CSS-SEEEEECT-----------------------TCCCHHHHHHHH-HHHGGGCCSEEECCSCCSS
T ss_pred HHHHHHHHHc---CCC-CcEEEeCC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCChHh
Confidence 5555555555 644 456 8883 367899999875 5589999999999999999
Q ss_pred HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCC
Q 011677 343 WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG 421 (479)
Q Consensus 343 ~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~g 421 (479)
++++++|++++ +||++||+.. ++++++++++.+++|+| ++|++++||||++++++++|+++|++++++++..
T Consensus 266 ~~~~~~l~~~~~iPIa~dE~~~-~~~~~~~~i~~ga~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~ 338 (424)
T 3v3w_A 266 QESFKLIRQHTTTPLAVGEVFN-SIHDCRELIQNQWIDYI------RTTIVHAGGISQMRRIADFASLFHVRTGFHGATD 338 (424)
T ss_dssp TTHHHHHHHHCCSCEEECTTCC-SGGGTHHHHHTTCCSEE------CCCTTTTTHHHHHHHHHHHHHTTTCEEEECCCTT
T ss_pred HHHHHHHHhhCCCCEEEccCcC-CHHHHHHHHHcCCCCeE------eecchhcCCHHHHHHHHHHHHHcCCEEEecCCCc
Confidence 99999999999 9999999864 59999999999999999 9999999999999999999999999986644432
Q ss_pred CCch--hHHHHhHhhcC
Q 011677 422 ETED--SFIADLSVGLA 436 (479)
Q Consensus 422 et~d--~~~~dlAv~~~ 436 (479)
++.. ++.+|||.++.
T Consensus 339 ~s~ig~aA~~hlaaa~p 355 (424)
T 3v3w_A 339 LSPVCMGAALHFDYWVP 355 (424)
T ss_dssp SCHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 4544 45677776653
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=348.71 Aligned_cols=317 Identities=14% Similarity=0.090 Sum_probs=224.5
Q ss_pred ceeeEEEEEEEecC----CCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHh
Q 011677 45 SVITKIKARQILDS----RGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120 (479)
Q Consensus 45 ~~I~~I~~~~i~ds----~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~ 120 (479)
|+|++|+++.+--. .++..+.|+|+|++|++ |+||+... .+. ...+...+++.++|.
T Consensus 1 MkIt~i~~~~v~~plp~~~~~~~~~V~v~td~G~~----------G~GE~~~~------~~~---~~~~~~~i~~~l~p~ 61 (412)
T 4e4u_A 1 MKIVSLETHIVAVPPPHVGGMYWIFVKLKTDDGIE----------GVGEIYSA------TFG---PKAMAPIIDDVFERH 61 (412)
T ss_dssp CCEEEEEEEEEECCTTCTTCSEEEEEEEEETTSCE----------EEEEECCC------SSC---HHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEccCCCccCCCceEEEEEEECCCCE----------EEEeecCC------CCC---HHHHHHHHHHHhHHH
Confidence 69999999998532 24568999999999994 99998542 122 234455677788999
Q ss_pred hcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCcc
Q 011677 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKH 200 (479)
Q Consensus 121 LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~ 200 (479)
|+|+||.+.+++|+.|++.......+....+|++|||+||||+.||.+|+|||+|||| ..+.++|+ |+.+..+.
T Consensus 62 LiG~dp~~~e~~~~~l~~~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~~--yas~~~~~- 135 (412)
T 4e4u_A 62 LLNRDPHHVERLFRQAYSSGFTQRPDLTMMGVVSGLEMACWDIIGKAAAKPVYELLGG---RIHERLRS--YTYLYPKN- 135 (412)
T ss_dssp TTTSCTTCHHHHHHHHHHTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTC---CCCSSEEE--EEECCCBC-
T ss_pred hCCCChhHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhHhHcCCcHHHHcCC---CcCCeeEE--EEeccCCc-
Confidence 9999999999999999763211111223467999999999999999999999999998 33455555 54432110
Q ss_pred CCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCC---CCchHHHHHHHHHHHHhcC
Q 011677 201 AGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPN---ISSIREGLDLVKEAINRTG 277 (479)
Q Consensus 201 ~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~---~~~~~~~l~~v~~ai~~~g 277 (479)
....... ...+...+++.+...++|+++| .|.|.... +..| ..+. .+.+.+.++.||+++ |
T Consensus 136 ~~~~~~~------~~~e~~~~~a~~~~~~G~~~iK----lK~g~~~~--~~~g-~~~~~~~~~~d~~~v~avR~a~---G 199 (412)
T 4e4u_A 136 AKGEYDY------DDPDLAAECAAENVKLGFTAVK----FDPAGPYT--AYSG-HQLSLEVLDRCELFCRRVREAV---G 199 (412)
T ss_dssp TTSCBCS------SCHHHHHHHHHHHHHHTCSEEE----ECCSCCCB--TTCC-BCCCHHHHHHHHHHHHHHHHHH---T
T ss_pred ccccccC------CCHHHHHHHHHHHHHcCCCEEE----ECCCCCCc--cccc-cccchhhHHHHHHHHHHHHHHh---C
Confidence 0000000 0111233445555555666655 45442111 1111 1221 223445555555555 6
Q ss_pred CCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hh
Q 011677 278 IPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQ 355 (479)
Q Consensus 278 ~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~ 355 (479)
.+ ..| +|+| +.||.++++++. +.++++++.|||||++++|++++++|++++ +|
T Consensus 200 ~d-~~l~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~iP 254 (412)
T 4e4u_A 200 SK-ADLLFGTH-----------------------GQMVPSSAIRLA-KRLEKYDPLWFEEPVPPGQEEAIAQVAKHTSIP 254 (412)
T ss_dssp TS-SEEEECCC-----------------------SCBCHHHHHHHH-HHHGGGCCSEEECCSCSSCHHHHHHHHHTCSSC
T ss_pred CC-CeEEEECC-----------------------CCCCHHHHHHHH-HHhhhcCCcEEECCCChhhHHHHHHHHhhCCCC
Confidence 44 455 8873 367889999875 558999999999999999999999999999 99
Q ss_pred hhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHh
Q 011677 356 VVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSV 433 (479)
Q Consensus 356 I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv 433 (479)
|++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|+++ +.|+. ++.. ++.+|||.
T Consensus 255 Ia~dE~~~-~~~~~~~~i~~~a~d~v------~~d~~~~GGit~~~kia~~A~~~gi~v-~~h~~-~s~i~~aa~~hlaa 325 (412)
T 4e4u_A 255 IATGERLT-TKYEFHKLLQAGGASIL------QLNVARVGGLLEAKKIATLAEVHYAQI-APHLY-NGPVGAAASIQLAT 325 (412)
T ss_dssp EEECTTCC-HHHHHHHHHHTTCCSEE------CCCTTTTTSHHHHHHHHHHHHHTTCEE-CCCCC-SCHHHHHHHHHHHH
T ss_pred EEecCccC-CHHHHHHHHHcCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEE-EecCC-CcHHHHHHHHHHHH
Confidence 99999864 59999999999999999 999999999999999999999999997 55654 3444 45666666
Q ss_pred hcC
Q 011677 434 GLA 436 (479)
Q Consensus 434 ~~~ 436 (479)
++.
T Consensus 326 a~p 328 (412)
T 4e4u_A 326 CTP 328 (412)
T ss_dssp TCT
T ss_pred hCC
Confidence 653
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=353.05 Aligned_cols=309 Identities=17% Similarity=0.179 Sum_probs=225.5
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
+|+|++|+...+. .++..+.|+|+|++|++ |+||+... +. ...+...|++.++|.|+|
T Consensus 16 ~mkIt~v~~~~~~--~~~~~~~V~v~td~G~~----------G~GE~~~~-------~~---~~~~~~~i~~~l~p~LiG 73 (418)
T 3r4e_A 16 HMKITAARVIITC--PGRNFVTLKIETDQGVY----------GIGDATLN-------GR---ELSVVAYLQEHVAPCLIG 73 (418)
T ss_dssp CCCEEEEEEEEEC--SSSCEEEEEEEETTSCE----------EEEECCCT-------TC---HHHHHHHHHHTHHHHHTT
T ss_pred CCEEEEEEEEEEc--CCCcEEEEEEEECCCCE----------EEEeccCC-------CC---hHHHHHHHHHHHHHHhcC
Confidence 6899999998763 34578999999999994 99997431 11 234455677779999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+||.+.+++|+.|.+.. ....+.+..+|++|||+||||+.||.+|+|||+|||| ..+.++|+ |+.+++.
T Consensus 74 ~dp~~ie~l~~~~~~~~-~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~~--y~~~~~~----- 142 (418)
T 3r4e_A 74 MDPRRIEDIWQYVYRGA-YWRRGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLGG---RSRDGIMV--YGHANGS----- 142 (418)
T ss_dssp SCTTCHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTC---CSCSSEEE--EEEEEES-----
T ss_pred CChhhHHHHHHHHHHhc-ccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCC---ccCCeeeE--EEeCCCC-----
Confidence 99999999999998632 1222345568999999999999999999999999998 33455555 5543321
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCc----ccCC--------CCCCCCC---------CCch
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGC----NVGE--------DGGLAPN---------ISSI 262 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~----~vg~--------~G~~~~~---------~~~~ 262 (479)
+. +...+++.+...++|+++| .|.|.... +.++ .|+ .|. ++.+
T Consensus 143 --~~---------e~~~~~a~~~~~~Gf~~~K----~k~G~~~~~~~~g~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~d 206 (418)
T 3r4e_A 143 --DI---------AETVEAVGHYIDMGYKAIR----AQTGVPGIKDAYGVGRGKLYYEPADAS-LPSVTGWDTRKALNYV 206 (418)
T ss_dssp --SH---------HHHHHHHHHHHHTTCSEEE----EEECCTTC------------------C-CCCEEEECHHHHHHHH
T ss_pred --CH---------HHHHHHHHHHHHcCCCEEE----EecCCcccccccccccccccccccccc-ccccccccchhHHHHH
Confidence 11 1234445555556676665 56553110 0000 000 011 1223
Q ss_pred HHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCcc
Q 011677 263 REGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKE 341 (479)
Q Consensus 263 ~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~ 341 (479)
.+.++.||+++ |.+ ..| +|+| +.||.++++++. +.++++++.|||||++++
T Consensus 207 ~~~v~avR~a~---G~d-~~l~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEqP~~~~ 258 (418)
T 3r4e_A 207 PKLFEELRKTY---GFD-HHLLHDGH-----------------------HRYTPQEAANLG-KMLEPYQLFWLEDCTPAE 258 (418)
T ss_dssp HHHHHHHHHHH---CSS-SEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCCSEEESCSCCS
T ss_pred HHHHHHHHHHc---CCC-CeEEEeCC-----------------------CCCCHHHHHHHH-HHHHhhCCCEEECCCCcc
Confidence 45555555555 644 455 8883 367889999875 558999999999999999
Q ss_pred CHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCC
Q 011677 342 DWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRS 420 (479)
Q Consensus 342 D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ 420 (479)
|++++++|++++ +||++||+.. ++++++++++.+++|+| ++|++++||||++++++++|+++|++++++++.
T Consensus 259 d~~~~~~l~~~~~iPIa~dE~~~-~~~~~~~~l~~~a~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 331 (418)
T 3r4e_A 259 NQEAFRLVRQHTVTPLAVGEIFN-TIWDAKDLIQNQLIDYI------RATVVGAGGLTHLRRIADLASLYQVRTGCHGPT 331 (418)
T ss_dssp SGGGGHHHHHHCCSCEEECTTCC-SGGGTHHHHHTTCCSEE------CCCTTTTTHHHHHHHHHHHHHHTTCEEEECCCT
T ss_pred CHHHHHHHHhcCCCCEEEcCCcC-CHHHHHHHHHcCCCCeE------ecCccccCCHHHHHHHHHHHHHcCCEEeecCCC
Confidence 999999999999 9999999865 59999999999999999 999999999999999999999999998664443
Q ss_pred CCCch--hHHHHhHhhcC
Q 011677 421 GETED--SFIADLSVGLA 436 (479)
Q Consensus 421 get~d--~~~~dlAv~~~ 436 (479)
.++.. ++.+||+.++.
T Consensus 332 ~~s~ig~aA~~hlaaa~p 349 (418)
T 3r4e_A 332 DLSPVTMGCALHFDTWVP 349 (418)
T ss_dssp TSCHHHHHHHHHHHHHCT
T ss_pred CccHHHHHHHHHHHHhCC
Confidence 24544 45677777653
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-41 Score=345.08 Aligned_cols=297 Identities=18% Similarity=0.182 Sum_probs=223.5
Q ss_pred CceeeEEEEEEEe--------cCCCC-----ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRGI-----PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAV 110 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g~-----~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av 110 (479)
||+|++|+.+.+. ++.+. ++++|+|+|++|++ |+||+.... .+..++.
T Consensus 1 M~kI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~V~v~td~G~~----------G~Ge~~~~g---------~~~~~~~ 61 (371)
T 2ovl_A 1 MSLIERVRTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGAT----------GLGYTYTVN---------HGGAAVA 61 (371)
T ss_dssp --CEEEEEEEEEEEEEEEEEBCTTTCCEEEEEEEEEEEEETTSCE----------EEEEEEEES---------SSHHHHH
T ss_pred CCceEEEEEEEEeccCCCCCccccccccCcceEEEEEEEECCCCE----------EEEeecCCC---------CchHHHH
Confidence 6899999998872 33332 36899999999984 999987631 1234566
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhh-hccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCccccc
Q 011677 111 KNINERISEALVGMDPILQSQIDQAMIDL-DKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPV 189 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~l~~~-~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pv 189 (479)
..+++.++|.|+|+||.+++++|+.|.+. .++. .+++..+|++|||+||||+.||..|+|||++||| . +.++
T Consensus 62 ~~i~~~l~~~l~G~d~~~~~~~~~~l~~~~~~~~-~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~---~~~v 134 (371)
T 2ovl_A 62 TMVDKDLRGCLLGADAEQIEKIWQSMWWRLHYAG-RGGHATSAISAVDIALWDLKGIRARTPLWKLFGG---Y---DPVV 134 (371)
T ss_dssp HHHHHTTHHHHTTSCTTCHHHHHHHHHHHTCTTC-SSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTC---C---CSEE
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHhhhcC-CchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C---CCCe
Confidence 66777899999999999999999999763 3222 2446689999999999999999999999999998 2 3356
Q ss_pred ceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHH
Q 011677 190 PAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLV 269 (479)
Q Consensus 190 p~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v 269 (479)
|+|++ +|.+. .+.++ ..+++.+...++|+.+| .|.| . ++.+.+.+.++.|
T Consensus 135 ~~y~~--~~~~~---~~~e~---------~~~~a~~~~~~Gf~~iK----ik~g-------~-----~~~~~~~e~v~av 184 (371)
T 2ovl_A 135 PVYAG--GIDLE---LPVAD---------LKTQADRFLAGGFRAIK----MKVG-------R-----PDLKEDVDRVSAL 184 (371)
T ss_dssp EEEEE--CCBTT---SCHHH---------HHHHHHHHHHTTCSCEE----EECC-------C-----SSHHHHHHHHHHH
T ss_pred eEEEe--CCCcC---CCHHH---------HHHHHHHHHHcCCCEEE----ECCC-------C-----CCHHHHHHHHHHH
Confidence 66764 33221 12222 23444444444555544 3422 1 1223445666666
Q ss_pred HHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHH
Q 011677 270 KEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 270 ~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~ 348 (479)
|+++ |.+ ..+ +|++ +.||.++++++.+ .+++|++.|||||++++|++++++
T Consensus 185 r~a~---G~d-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~~i~~iEqP~~~~d~~~~~~ 236 (371)
T 2ovl_A 185 REHL---GDS-FPLMVDAN-----------------------MKWTVDGAIRAAR-ALAPFDLHWIEEPTIPDDLVGNAR 236 (371)
T ss_dssp HHHH---CTT-SCEEEECT-----------------------TCSCHHHHHHHHH-HHGGGCCSEEECCSCTTCHHHHHH
T ss_pred HHHh---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HHHhcCCCEEECCCCcccHHHHHH
Confidence 6666 644 456 8883 3578899998865 589999999999999999999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhH
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSF 427 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~ 427 (479)
|++++ +||++||+.. ++++++++++.+++|++ ++|++++||+|++++++++|+++|+++++ |++. .+
T Consensus 237 l~~~~~iPI~~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~~GGi~~~~~i~~~A~~~gi~~~~-h~~~----~a 304 (371)
T 2ovl_A 237 IVRESGHTIAGGENLH-TLYDFHNAVRAGSLTLP------EPDVSNIGGYTTFRKVAALAEANNMLLTS-HGVH----DL 304 (371)
T ss_dssp HHHHHCSCEEECTTCC-SHHHHHHHHHHTCCSEE------CCCTTTTTSHHHHHHHHHHHHHTTCCEEE-CSCH----HH
T ss_pred HHhhCCCCEEeCCCCC-CHHHHHHHHHcCCCCEE------eeCccccCCHHHHHHHHHHHHHcCCeEcc-ccHH----HH
Confidence 99999 9999999865 59999999999999999 99999999999999999999999999876 5443 26
Q ss_pred HHHhHhhcC
Q 011677 428 IADLSVGLA 436 (479)
Q Consensus 428 ~~dlAv~~~ 436 (479)
.+|||.++.
T Consensus 305 ~~hlaaa~~ 313 (371)
T 2ovl_A 305 TVHALASVP 313 (371)
T ss_dssp HHHHHTSCT
T ss_pred HHHHHhhCC
Confidence 678877764
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=347.53 Aligned_cols=301 Identities=15% Similarity=0.091 Sum_probs=229.7
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. .+.+ +..+.|+|+|++|++ |+||+.++.. +.|.+++...+..
T Consensus 5 ~MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~~---~~~~~e~~~~~~~ 71 (383)
T 3i4k_A 5 DLTIQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVI----------GYGEGVVPGG---PWWGGESVETMKA 71 (383)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEECCSSS---TTTTSCCHHHHHH
T ss_pred CCEEEEEEEEEEeccccCCeEecceEEEeeeEEEEEEEECCCCE----------EEEecccCCC---CccCCCCHHHHHH
Confidence 4799999998873 3333 457999999999994 9999876522 4588888888888
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.|++.++|.|+|+||.+.+++|+.|.+... + ...|++|||+||||+.||..|+|||++||| ..+.++|+
T Consensus 72 ~i~~~l~p~l~G~d~~~~~~~~~~l~~~~~----~--~~~A~said~ALwDl~gk~~g~Pv~~LLGg---~~r~~v~~-- 140 (383)
T 3i4k_A 72 LVDGYLAPVLIGRAVSELAGIMADLERVVA----R--ARYAKAAVDVAMHDAWARSLNVPVRDLLGG---TVRDKVDV-- 140 (383)
T ss_dssp HHHHTTHHHHTTSBGGGHHHHHHHHHHHCC----S--CHHHHHHHHHHHHHHHHHHTTSBGGGGTTC---CSCSEEEB--
T ss_pred HHHhhhhHHHcCCCccCHHHHHHHHHHHhc----C--CHHHHHHHHHHHHHHHHHHcCCCHHHHhCC---CCCCeEEE--
Confidence 898889999999999999999999976321 1 157999999999999999999999999998 33455555
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHH-HHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSE-TYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e-~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
+..++.+ + .....+++.+...+ +|+.+| .|.|. .+.+.+.+.++.||
T Consensus 141 ~~t~~~~-------~---------~~~~~~~a~~~~~~~G~~~~K----~Kvg~------------~~~~~d~~~v~avR 188 (383)
T 3i4k_A 141 TWALGVL-------P---------LDVAVAEIEERIEEFGNRSFK----LKMGA------------GDPAEDTRRVAELA 188 (383)
T ss_dssp CEEECSC-------C---------HHHHHHHHHHHHHHHCCSEEE----EECCS------------SCHHHHHHHHHHHH
T ss_pred eEEeeCC-------C---------HHHHHHHHHHHHHhcCCcEEE----EeeCC------------CCHHHHHHHHHHHH
Confidence 4333221 1 11234445444444 565555 45431 11233344444444
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L 349 (479)
+++ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|
T Consensus 189 ~a~---g~~-~~l~vDan-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l 240 (383)
T 3i4k_A 189 REV---GDR-VSLRIDIN-----------------------ARWDRRTALHYL-PILAEAGVELFEQPTPADDLETLREI 240 (383)
T ss_dssp HTT---TTT-SEEEEECT-----------------------TCSCHHHHHHHH-HHHHHTTCCEEESCSCTTCHHHHHHH
T ss_pred HHc---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCChhhHHHHHHH
Confidence 444 644 356 8883 367889999875 55899999999999999999999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--h
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--S 426 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~ 426 (479)
++++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|+. |+.. +
T Consensus 241 ~~~~~iPIa~dE~~-~~~~~~~~~i~~~~~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~-es~i~~a 312 (383)
T 3i4k_A 241 TRRTNVSVMADESV-WTPAEALAVVKAQAADVI------ALKTTKHGGLLESKKIAAIAEAGGLACHGATSL-EGPIGTA 312 (383)
T ss_dssp HHHHCCEEEESTTC-SSHHHHHHHHHHTCCSEE------EECTTTTTSHHHHHHHHHHHHHTTCEEEECCSC-CCHHHHH
T ss_pred HhhCCCCEEecCcc-CCHHHHHHHHHcCCCCEE------EEcccccCCHHHHHHHHHHHHHcCCeEEeCCCC-ccHHHHH
Confidence 9999 999999976 459999999999999999 999999999999999999999999999887754 5544 4
Q ss_pred HHHHhHhhcC
Q 011677 427 FIADLSVGLA 436 (479)
Q Consensus 427 ~~~dlAv~~~ 436 (479)
+.+||+.++.
T Consensus 313 a~~hlaaa~p 322 (383)
T 3i4k_A 313 ASLQFAASTK 322 (383)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHcCC
Confidence 5566666653
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-41 Score=346.80 Aligned_cols=301 Identities=15% Similarity=0.132 Sum_probs=223.4
Q ss_pred CceeeEEEEEEEec-------CCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHH
Q 011677 44 PSVITKIKARQILD-------SRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINER 116 (479)
Q Consensus 44 ~~~I~~I~~~~i~d-------s~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~ 116 (479)
+|+|++|+++.+.. ++++++++|+|+|++|++ |+||+.+++ +.++ .....|++
T Consensus 10 ~MkI~~i~~~~~~p~~~~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~------~~~~---~~~~~i~~- 69 (391)
T 2qgy_A 10 IGKLSRLKIWITDNHLSDDQWSNTKKFIIIKITTEDGIE----------GWGEAFSIN------FREK---GIAIIIKE- 69 (391)
T ss_dssp CCCEEEEEEEEECCCBCGGGCSBCCCCEEEEEEETTCCE----------EEEEECCCT------TTHH---HHHHHHHH-
T ss_pred CCEEEEEEEEEecCccccccccCCCcEEEEEEEECCCCE----------EEecccCCC------CChH---HHHHHHHH-
Confidence 37999999999953 235678999999999984 999987641 2333 34445666
Q ss_pred HHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeec
Q 011677 117 ISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVIS 196 (479)
Q Consensus 117 l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~ 196 (479)
++|.|+|+||.+++++|+.|.+++.....+++ .+|++|||+||||+.||..|+|||++||| .. +.++|+|+ +
T Consensus 70 l~p~l~G~d~~~~~~i~~~l~~~~~~~~g~~~-~~a~~aid~AlwDl~ak~~g~Pl~~llGg---~~--~~~vp~~~--~ 141 (391)
T 2qgy_A 70 LFREISNIPNLSIKSFYNKISLLSDGHRGLDF-SSATSAIEIALWDISGKLKNLPLNSLLTK---SP--KPNVPIYA--T 141 (391)
T ss_dssp HHHHHTTCTTCCHHHHHHHHHHHHTTCCCHHH-HHHHHHHHHHHHHHHHHHHTSBHHHHHCS---SC--CSEEEEEE--E
T ss_pred HHHHhcCCChhHHHHHHHHHHhhhhhccCchH-HHHHHHHHHHHHHHHHHHhCCcHHHHcCC---Cc--CCCcceEE--e
Confidence 99999999999999999999763322221234 78999999999999999999999999998 22 34566676 3
Q ss_pred CCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhc
Q 011677 197 GGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRT 276 (479)
Q Consensus 197 GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~ 276 (479)
|+.+.. .+.++ ..+++.+...++|+.+| .|.| +.+ .+.+.+.++.||+++
T Consensus 142 g~~~~~--~~~~~---------~~~~a~~~~~~Gf~~vK----ik~g-----------~~~-~~~~~e~v~avR~a~--- 191 (391)
T 2qgy_A 142 CWSDLK--KDTND---------YLRQIEKFYGKKYGGIK----IYPM-----------LDS-LSISIQFVEKVREIV--- 191 (391)
T ss_dssp CCCSSC--CCHHH---------HHHHHHHHHHTTCSCEE----ECCC-----------CSS-HHHHHHHHHHHHHHH---
T ss_pred cccCCC--CCHHH---------HHHHHHHHHHcCCCEEE----EccC-----------CCh-HHHHHHHHHHHHHHh---
Confidence 433211 11111 23344444444454444 2322 111 123455666666655
Q ss_pred CCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-h
Q 011677 277 GIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-Q 354 (479)
Q Consensus 277 g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~ 354 (479)
|.+ ..| +|++ +.||.++++++.+ .+++|++.|||||++++|++++++|++++ +
T Consensus 192 G~d-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~i 246 (391)
T 2qgy_A 192 GDE-LPLMLDLA-----------------------VPEDLDQTKSFLK-EVSSFNPYWIEEPVDGENISLLTEIKNTFNM 246 (391)
T ss_dssp CSS-SCEEEECC-----------------------CCSCHHHHHHHHH-HHGGGCCSEEECSSCTTCHHHHHHHHHHCSS
T ss_pred CCC-CEEEEEcC-----------------------CCCCHHHHHHHHH-HHHhcCCCeEeCCCChhhHHHHHHHHhhCCC
Confidence 644 456 8883 3578899998865 58999999999999999999999999999 9
Q ss_pred hhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCC-chh--HHHHh
Q 011677 355 QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGET-EDS--FIADL 431 (479)
Q Consensus 355 ~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get-~d~--~~~dl 431 (479)
||++||... ++++++++++.+++|+| ++|++++||+|++++++++|+++|++++++++ ++ ..+ +.+||
T Consensus 247 PIa~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~--~~~~i~~aa~~hl 317 (391)
T 2qgy_A 247 KVVTGEKQS-GLVHFRELISRNAADIF------NPDISGMGGLIDIIEISNEASNNGIFISPHCW--NSMSVSASAMLHV 317 (391)
T ss_dssp CEEECTTCC-SHHHHHHHHHTTCCSEE------CCBTTTSSCHHHHHHHHHHHHHTTCEECCBCC--SCTTHHHHHHHHH
T ss_pred CEEEcCCcC-CHHHHHHHHHcCCCCEE------EECcchhCCHHHHHHHHHHHHHCCCEEeccCC--CCcHHHHHHHHHH
Confidence 999999875 59999999999999999 99999999999999999999999999877654 54 444 55677
Q ss_pred HhhcC
Q 011677 432 SVGLA 436 (479)
Q Consensus 432 Av~~~ 436 (479)
|.++.
T Consensus 318 aaa~~ 322 (391)
T 2qgy_A 318 CSSIP 322 (391)
T ss_dssp HHHCT
T ss_pred HHhCC
Confidence 66654
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=348.31 Aligned_cols=292 Identities=17% Similarity=0.184 Sum_probs=225.7
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.+ ++.+.|+|+|++|++ |+||+.+. +.|.+++...+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~ge~~~~~~~~ 65 (354)
T 3jva_A 1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLV----------GYGEGGPG-----IFITGETLAGTLET 65 (354)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECCC-----TTTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEEEeccCCEEecCcEEeeceEEEEEEEECCCCE----------EEEeecCC-----CCcCCCCHHHHHHH
Confidence 689999988773 2332 357999999999994 99998764 34677788888877
Q ss_pred HHHHHH---HhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCccccc
Q 011677 113 INERIS---EALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPV 189 (479)
Q Consensus 113 i~~~l~---p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pv 189 (479)
|+ .++ |.|+|+||.+.+++|+.|. ..+ .+|++|||+||||+.||..|+|||++||| . +.++|+
T Consensus 66 i~-~l~~~~p~l~G~d~~~~~~~~~~l~----~~~-----~~A~~aid~AlwDl~gk~~g~Pl~~llGg---~-~~~v~~ 131 (354)
T 3jva_A 66 IE-LFGQAIIGLNPFNIEKIHEVMDKIS----AFA-----PAAKAAIDIACYDLMGQKAQLPLYQLLGG---Y-DNQVIT 131 (354)
T ss_dssp HH-HHHTTSTTCCTTCHHHHHHHHHHHC----SSC-----HHHHHHHHHHHHHHHHHHHTSBHHHHTTC---S-CSEEEC
T ss_pred HH-HHhhcCccccCCCcccHHHHHHHHh----ccc-----HHHHHHHHHHHHHHHHHHcCCcHHHHhhc---c-CCeeee
Confidence 87 899 9999999999999998886 111 46999999999999999999999999998 2 345555
Q ss_pred ceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHH
Q 011677 190 PAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLV 269 (479)
Q Consensus 190 p~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v 269 (479)
. ..++.+ + .+...+++.+...++|+.+| .|.|. +.+.+.+.++.|
T Consensus 132 ~--~~~~~~-------~---------~~~~~~~a~~~~~~G~~~~K----~K~g~-------------~~~~d~~~v~av 176 (354)
T 3jva_A 132 D--ITLGID-------E---------PNVMAQKAVEKVKLGFDTLK----IKVGT-------------GIEADIARVKAI 176 (354)
T ss_dssp C--EEECSC-------C---------HHHHHHHHHHHHHTTCSEEE----EECCS-------------CHHHHHHHHHHH
T ss_pred e--EEeCCC-------C---------HHHHHHHHHHHHHhCCCeEE----EEeCC-------------CHHHHHHHHHHH
Confidence 3 222111 0 11234445455555665555 45331 113456666666
Q ss_pred HHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHH
Q 011677 270 KEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 270 ~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~ 348 (479)
|+++ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++
T Consensus 177 R~a~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~-~~L~~~~i~~iEqP~~~~d~~~~~~ 228 (354)
T 3jva_A 177 REAV---GFD-IKLRLDAN-----------------------QAWTPKDAVKAI-QALADYQIELVEQPVKRRDLEGLKY 228 (354)
T ss_dssp HHHH---CTT-SEEEEECT-----------------------TCSCHHHHHHHH-HHTTTSCEEEEECCSCTTCHHHHHH
T ss_pred HHHc---CCC-CeEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCChhhHHHHHH
Confidence 6666 644 355 8883 367889999876 4579999999999999999999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhH
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSF 427 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~ 427 (479)
|++++ +||++||+. +++++++++++.+++|++ ++|++++||+|++++++++|+++|++++++|+.+|+..+.
T Consensus 229 l~~~~~iPIa~dE~~-~~~~~~~~~l~~~~~d~v------~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~~es~i~~ 301 (354)
T 3jva_A 229 VTSQVNTTIMADESC-FDAQDALELVKKGTVDVI------NIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGI 301 (354)
T ss_dssp HHHHCSSEEEESTTC-CSHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEECCCTTCCHHHH
T ss_pred HHHhCCCCEEEcCCc-CCHHHHHHHHHcCCCCEE------EECchhcCCHHHHHHHHHHHHHcCCeEEecCCCcccHHHH
Confidence 99999 999999985 569999999999999999 9999999999999999999999999999988877887765
Q ss_pred HHHhHhhc
Q 011677 428 IADLSVGL 435 (479)
Q Consensus 428 ~~dlAv~~ 435 (479)
.+.++++.
T Consensus 302 ~a~~hlaa 309 (354)
T 3jva_A 302 TAAAHLAA 309 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55544444
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=348.01 Aligned_cols=299 Identities=17% Similarity=0.119 Sum_probs=222.4
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
.|+|++|+++.+. .+.| +.++.|+|+|++|++ |+||+.. .+++...+..
T Consensus 19 ~MkIt~Ie~~~~~~Pl~~p~~~s~g~~~~~~~vlV~i~td~G~~----------G~Ge~~~---------~~~~~~~~~~ 79 (388)
T 4h83_A 19 GLTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGII----------GEAYTGD---------EHETMFDIDR 79 (388)
T ss_dssp -CBEEEEEEEEEEEEC----------CCEEEEEEEEEEETTSCE----------EEEEECC---------CCTTHHHHHH
T ss_pred CCEEEEEEEEEEEeeccCCEECCCEEEEEEEEEEEEEEECCCCE----------EEEEecC---------CcccHHHHHH
Confidence 5799999999883 2222 457999999999984 9999743 2345666777
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhcc-CCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccc
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKT-EKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVP 190 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~-~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp 190 (479)
.|++.|+|.|+|+||.+++.+|+.|.+.... ...+....+|++|||+||||+.||.+|+|||++||| . +.++|++
T Consensus 80 ~i~~~lap~LiG~dp~~ie~l~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGg---~-~~~~~~y 155 (388)
T 4h83_A 80 IIHEELAPTLIGQDAMAIERLWDSGYKVTFDILRDRRLGLVALAAVNTAIWDAVGKALKMPLWKLWGG---Y-RNELPMI 155 (388)
T ss_dssp HHHHTTHHHHTTSBTTCHHHHHHHHGGGGCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTC---S-CSEEEEE
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHcCCChhhhcCC---C-cCceEEE
Confidence 7888999999999999999999999764322 112235578999999999999999999999999998 2 3455554
Q ss_pred eEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 191 AFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 191 ~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
..+ +.+. . + .....+++.+...++|+.+| .|.| + .+.+++.++++.||
T Consensus 156 ~~~----~~~~-~--~---------~~~~~~~~~~~~~~G~~~~K----ikvg----------~--~~~~~d~~~v~avR 203 (388)
T 4h83_A 156 AIG----GYYG-E--P---------LGSIADEMHNYQELGLAGVK----FKVG----------G--LSAAEDAARITAAR 203 (388)
T ss_dssp EEE----CCTT-C--T---------TCSHHHHHHHHHHHTBSEEE----EECS----------S--SCHHHHHHHHHHHH
T ss_pred eec----cccC-C--C---------HHHHHHHHHHHHHcCCceEe----ecCC----------C--CCHHHHHHHHHHHH
Confidence 322 2111 0 0 12234445445555665555 3432 1 12233455666666
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCc-cCHHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDK-EDWEHTKS 348 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~-~D~~g~~~ 348 (479)
+++ |.+ ..+ +|+| +.||.++++++. +.+++|++.|||||+++ +|++++++
T Consensus 204 ~~~---G~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~~~~iEeP~~~~~d~~~~~~ 255 (388)
T 4h83_A 204 EAA---GDD-FIICIDAN-----------------------QGYKPAVAVDLS-RRIADLNIRWFEEPVEWHNDKRSMRD 255 (388)
T ss_dssp HHH---CSS-SEEEEECT-----------------------TCBCHHHHHHHH-HHTTTSCCCCEESCBCSTTHHHHHHH
T ss_pred Hhc---CCC-eEEEEecC-----------------------cCCCHHHHHHHH-HHhhhcCcceeecCcccccchHHHHH
Confidence 655 755 456 9984 367899999875 45799999999999986 67999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhH
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSF 427 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~ 427 (479)
|++++ +||++||+.. ++++++++++.+++|++ |+|++++||||++++++++|+++|+.+ .+|.. .+.
T Consensus 256 l~~~~~ipIa~dE~~~-~~~~~~~~i~~~a~d~i------~~d~~~~GGit~~~kia~~A~~~gv~v-~~h~~----~~~ 323 (388)
T 4h83_A 256 VRYQGSVPVCAGQTEF-SASGCRDLMETGAIDVC------NFDSSWSGGPTAWLRTAAIATSYDVQM-GHHEE----PQV 323 (388)
T ss_dssp HHHHSSSCEEECTTCS-SHHHHHHHHHHTCCSEE------CCCGGGTTCHHHHHHHHHHHHHTTCEE-CCCSC----HHH
T ss_pred HHhhcCCCccCCcccc-ChHhHHHHHHcCCCCeE------eecceeCCCHHHHHHHHHHHHHCCCEE-EecCH----HHH
Confidence 99999 9999999865 59999999999999999 999999999999999999999999974 55542 345
Q ss_pred HHHhHhhcCC
Q 011677 428 IADLSVGLAS 437 (479)
Q Consensus 428 ~~dlAv~~~~ 437 (479)
.+|++.++..
T Consensus 324 ~~h~~aa~~~ 333 (388)
T 4h83_A 324 STHLLASQPH 333 (388)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHHhhc
Confidence 6788877744
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=343.27 Aligned_cols=298 Identities=15% Similarity=0.125 Sum_probs=220.2
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+++.+- .|.+ +..+.|+|+|+ |+ +|+||+.++.. +.|.+++.+++...
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~v~V~i~td-G~----------~G~GE~~~~~~---p~~~~e~~~~~~~~ 66 (370)
T 2chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYSE-GL----------VGVGEGGSVGG---PVWSAECAETIKII 66 (370)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEBT-TB----------CCEEECCCSTT---TTTSSCCHHHHHHH
T ss_pred CEEEEEEEEEEEcccCCceEccceEEEEEEEEEEEEEEC-Cc----------EEEEEecCCCC---CccCcccHHHHHHH
Confidence 699999998772 3333 45799999985 98 59999877643 56888888888888
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
|++.++|.|+|+||.+.+.+|+.|.+.. . + ...|++|||+||||+.||..|+|||++||| ..+.++|+ +
T Consensus 67 i~~~l~p~liG~d~~~~~~~~~~~~~~~--~--~--~~~A~said~AlwDl~gK~~g~Pl~~lLGg---~~~~~~~~--~ 135 (370)
T 2chr_A 67 VERYLAPHLLGTDAFNVSGALQTMARAV--T--G--NASAKAAVEMALLDLKARALGVSIAELLGG---PLRSAIPI--A 135 (370)
T ss_dssp HHHHTHHHHTTSCTTCHHHHHHHHHTTC--S--S--CHHHHHHHHHHHHHHHHHHTTCCHHHHTTC---CSCSEEEB--E
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHhhcc--c--c--cHHHHHHHHHHHHHHHHHhcCCccccccCC---ccccccce--e
Confidence 9999999999999999999999987532 1 1 146999999999999999999999999998 33444444 4
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHH-HHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMG-SETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~-~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
..+.++. .. ....+..+.. ..+|+.+ |.| +|. .++.+.++.++.
T Consensus 136 ~~~~~~~-------~~---------~~~~~~~~~~~~~g~~~~----K~K-------vg~--------~~~~~d~~~v~a 180 (370)
T 2chr_A 136 WTLASGD-------TK---------RDLDSAVEMIERRRHNRF----KVK-------LGF--------RSPQDDLIHMEA 180 (370)
T ss_dssp EEECSSC-------HH---------HHHHHHHHHHHTTSCCEE----EEE-------CSS--------SCHHHHHHHHHH
T ss_pred eeeccCc-------hh---------hhHHHHHHHHhhccccee----ecc-------ccc--------CChHHHHHHHHH
Confidence 3332221 00 0111111111 0112111 123 221 123444555544
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
..+.+|.+ .++ +|+| +.||.++++++. +.+++|++.|||||++++|++++++|+
T Consensus 181 vr~~~g~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~l~ 235 (370)
T 2chr_A 181 LSNSLGSK-AYLRVDVN-----------------------QAWDEQVASVYI-PELEALGVELIEQPVGRENTQALRRLS 235 (370)
T ss_dssp HHHHTTTT-SEEEEECT-----------------------TCCCTHHHHHHH-HHHHTTTCCEEECCSCSSCHHHHHHHH
T ss_pred HHHhcCCC-cEEEecCC-----------------------CCCCHHHHHHHH-HHHHhcCCceecCCCChhhhhhhhHHh
Confidence 44455755 566 9984 357889999875 457999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--H
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--F 427 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~ 427 (479)
+++ +||++||+.. ++++++++++.+++|++ |+|++++||||++++++++|+++|++++++|+. ++..+ +
T Consensus 236 ~~~~ipIa~dE~~~-~~~~~~~~~~~~a~d~i------~~d~~~~GGit~~~~ia~~A~~~gi~~~~~~~~-~~~i~~aa 307 (370)
T 2chr_A 236 DNNRVAIMADESLS-TLASAFDLARDRSVDVF------SLKLCNMGGVSATQKIAAVAEASGIASYGGTML-DSTIGTSV 307 (370)
T ss_dssp HHCSSEEEESSSCC-SHHHHHHHHTTTCCSEE------CCCHHHHTSHHHHHHHHHHHHHHTCEECCCCCS-CCHHHHHH
T ss_pred hhccCCccCCccCC-CHHHHHHHHHcCCCcEE------EeCCcccCCHHHHHHHHHHHHHcCCeEEeCCCc-ccHHHHHH
Confidence 999 9999999865 59999999999999999 999999999999999999999999998776654 55554 4
Q ss_pred HHHhHhhc
Q 011677 428 IADLSVGL 435 (479)
Q Consensus 428 ~~dlAv~~ 435 (479)
.+||+.++
T Consensus 308 ~~hlaa~~ 315 (370)
T 2chr_A 308 ALQLYSTV 315 (370)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhC
Confidence 45555554
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=348.91 Aligned_cols=301 Identities=15% Similarity=0.153 Sum_probs=216.5
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
||+|++|+.+.+ ..+.+.|+|+|++|++ |+||+... + +...+...++ .++|.|+|
T Consensus 1 mMkIt~i~~~~~----~~~~~~V~v~td~G~~----------G~GE~~~~---------g-~~~~~~~~i~-~l~p~liG 55 (405)
T 3rr1_A 1 MVKITRLTTYRL----PPRWMFLKVETDEGVT----------GWGEPVIE---------G-RARTVEAAVH-ELSDYLIG 55 (405)
T ss_dssp CCCEEEEEEEEE----TTTEEEEEEEETTSCE----------EEECCCCT---------T-CHHHHHHHHH-HHGGGTTT
T ss_pred CCeEEEEEEEEE----CCCEEEEEEEECCCCE----------EEEeCCCC---------C-CHHHHHHHHH-HHHHHHCC
Confidence 799999999998 2457999999999994 99997642 1 1233344454 49999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+||.+.+++|+.|.+... ...+.+..+|++|||+||||+.||.+|+|||++||| ..+.++| +|..+++.
T Consensus 56 ~dp~~~e~~~~~l~~~~~-~~g~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~--~y~~~~~~----- 124 (405)
T 3rr1_A 56 QDPSRINDLWQTMYRAGF-YRGGPILMSAIAGIDQALWDIKGKVLGVPVYELLGG---LVRDKMR--TYSWVGGD----- 124 (405)
T ss_dssp SCTTCHHHHHHHHHHTSS-SCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSCSCEE--EEEECCCS-----
T ss_pred CCcccHHHHHHHHHHhhc-ccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCc---cccCcee--eeEeCCCC-----
Confidence 999999999999986321 222345568999999999999999999999999998 3344544 46544211
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW 283 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i 283 (479)
+. +...+++.+...++|+++|. .|... ..+.....+.++.++.|+...+.+|.+ ..|
T Consensus 125 --~~---------e~~~~~a~~~~~~G~~~iKl-----~G~~~------~~~~~~~~~~~~d~e~v~avR~avG~d-~~L 181 (405)
T 3rr1_A 125 --RP---------ADVIAGMKALQAGGFDHFKL-----NGCEE------MGIIDTSRAVDAAVARVAEIRSAFGNT-VEF 181 (405)
T ss_dssp --SH---------HHHHHHHHHHHHTTCCEEEE-----ESCCS------SSCBCSHHHHHHHHHHHHHHHHTTGGG-SEE
T ss_pred --CH---------HHHHHHHHHHHHcCCCEEEE-----ecCCc------ccccccchhHHHHHHHHHHHHHHhCCC-ceE
Confidence 11 11233343444445555441 12110 011111112234444443333344644 345
Q ss_pred -eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCc
Q 011677 284 -SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDL 361 (479)
Q Consensus 284 -iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~ 361 (479)
+|+| +.||.++++++. +.++++++.|||||++++|++++++|++++ +||++||+
T Consensus 182 ~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~ 237 (405)
T 3rr1_A 182 GLDFH-----------------------GRVSAPMAKVLI-KELEPYRPLFIEEPVLAEQAETYARLAAHTHLPIAAGER 237 (405)
T ss_dssp EEECC-----------------------SCBCHHHHHHHH-HHHGGGCCSCEECSSCCSSTHHHHHHHTTCSSCEEECTT
T ss_pred EEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCCcccHHHHHHHHhcCCCCEEecCC
Confidence 8883 367889999875 558999999999999999999999999999 99999998
Q ss_pred cccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 362 LMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 362 ~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
.. ++++++++++.+++|++ ++|++++||||++++++++|+++|+++++ |+. ++.. ++.+|||.++.
T Consensus 238 i~-~~~~~~~~l~~~a~d~v------~~d~~~~GGitea~kia~lA~~~gi~v~~-h~~-~s~i~~aa~~hlaaa~p 305 (405)
T 3rr1_A 238 MF-SRFDFKRVLEAGGVSIL------QPDLSHAGGITECVKIAAMAEAYDVALAP-HCP-LGPIALAACLHVDFVSW 305 (405)
T ss_dssp CC-SHHHHHHHHHHCCCSEE------CCBTTTTTHHHHHHHHHHHHHTTTCEECC-BCC-SCHHHHHHHHHHHHHCT
T ss_pred cC-CHHHHHHHHHHhCCCeE------EEChhhcCCHHHHHHHHHHHHHcCCEEEe-CCC-CcHHHHHHHHHHHHhCC
Confidence 64 69999999999999999 99999999999999999999999999865 544 4544 45666666653
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-41 Score=350.40 Aligned_cols=298 Identities=19% Similarity=0.206 Sum_probs=231.9
Q ss_pred CceeeEEEEEEE--------ecCCCC------ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHH
Q 011677 44 PSVITKIKARQI--------LDSRGI------PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRA 109 (479)
Q Consensus 44 ~~~I~~I~~~~i--------~ds~g~------~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~a 109 (479)
.|+|++|+++.+ .+|+|. ++++|+|+|++|++ |+||+.+ |++.+++
T Consensus 38 ~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~v~V~v~td~G~~----------G~GE~~~----------g~~~~~~ 97 (428)
T 3bjs_A 38 DMKITKINAIPLSYRLPEGKTVTMGVGSTIKRDAIIIRVETSEGIT----------GYGEAHP----------GRSPGAI 97 (428)
T ss_dssp -CBEEEEEEEEEEEECC---CCBCSSCBCSEEEEEEEEEEETTSCE----------EEEEECC----------TTCHHHH
T ss_pred CCEEeEEEEEEEecccCCcccccccccccccccEEEEEEEECCCCE----------EEEEecC----------CCCHHHH
Confidence 479999999988 355665 68999999999984 9999853 3456677
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccC-CC--CchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcc
Q 011677 110 VKNINERISEALVGMDPILQSQIDQAMIDLDKTE-KK--GELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLT 186 (479)
Q Consensus 110 v~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~-~~--~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~ 186 (479)
...|++.++|.|+|+||.+++++|+.|.+. +. +. +++..+|++|||+||||+.||..|+|||++||| . +
T Consensus 98 ~~~i~~~l~p~liG~d~~~~~~i~~~l~~~--~~~~~~~~g~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg---~---~ 169 (428)
T 3bjs_A 98 TSLIHNTIAPMLIGMKATDCVGAWQRVHRM--QLSSHGLGAGAALAISGIDMALWDIRGKAANMPLYELLGG---S---K 169 (428)
T ss_dssp HHHHHHTTTTTTTTSBTTCHHHHHHHHHHH--TTTTTSCTHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---C---C
T ss_pred HHHHHHHHHHHhCCCCccCHHHHHHHHHHh--hhhccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCC---C---C
Confidence 778887899999999999999999999652 22 22 235679999999999999999999999999998 3 3
Q ss_pred cccceEEeecCCccCCCcccccceeeccCC-CCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHH
Q 011677 187 LPVPAFTVISGGKHAGNNLAIQDIMILPIG-ASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREG 265 (479)
Q Consensus 187 ~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~-~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~ 265 (479)
.++|+|++ |+.+.+ .. ....+++.+...++|+.+| .|.| . +.+.+.+.
T Consensus 170 ~~vp~~~s--g~~~~~------------~~~e~~~~~a~~~~~~Gf~~vK----ik~g-------~------~~~~d~e~ 218 (428)
T 3bjs_A 170 RRIPAYAG--GIALGY------------QPKESLAEEAQEYIARGYKALK----LRIG-------D------AARVDIER 218 (428)
T ss_dssp CCEEEEEE--SSCSCS------------CCHHHHHHHHHHHHHHTCSEEE----EECC-------S------CHHHHHHH
T ss_pred Cceeeeee--ccccCC------------ChHHHHHHHHHHHHHCCCCEEE----ECCC-------C------CHHHHHHH
Confidence 45666775 332211 11 1234555555566666655 3422 1 22344666
Q ss_pred HHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHH
Q 011677 266 LDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE 344 (479)
Q Consensus 266 l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~ 344 (479)
++.||+++ |.+ ..| +|+| +.||.+|+++++. .+++|+|.|||||++++|++
T Consensus 219 v~avR~av---G~d-~~l~vDan-----------------------~~~~~~eai~~~~-~L~~~~i~~iEqP~~~~d~~ 270 (428)
T 3bjs_A 219 VRHVRKVL---GDE-VDILTDAN-----------------------TAYTMADARRVLP-VLAEIQAGWLEEPFACNDFA 270 (428)
T ss_dssp HHHHHHHH---CTT-SEEEEECT-----------------------TCCCHHHHHHHHH-HHHHTTCSCEECCSCTTCHH
T ss_pred HHHHHHhc---CCC-CEEEEECC-----------------------CCCCHHHHHHHHH-HHHhcCCCEEECCCCccCHH
Confidence 66676666 644 456 8883 3568899998864 58999999999999999999
Q ss_pred HHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCC
Q 011677 345 HTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGE 422 (479)
Q Consensus 345 g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ge 422 (479)
++++|++++ +||++||+..+ +++++++++.+++|++ ++|++++||||++++++++|+++|+++|+ | +.|
T Consensus 271 ~~~~l~~~~~~iPIa~dE~~~~-~~~~~~~i~~~~~d~v------~ik~~~~GGitea~~ia~~A~~~gi~~~~-~-~~e 341 (428)
T 3bjs_A 271 SYREVAKITPLVPIAAGENHYT-RFEFGQMLDAGAVQVW------QPDLSKCGGITEGIRIAAMASAYRIPINA-H-SSA 341 (428)
T ss_dssp HHHHHTTTCSSSCEEECTTCCS-HHHHHHHHTTCCEEEE------CCBTTTSSCHHHHHHHHHHHHHTTCCBCC-B-CCS
T ss_pred HHHHHHHhCCCCcEEcCCCcCC-HHHHHHHHHhCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCeEEe-c-CCC
Confidence 999999987 89999998754 9999999999999999 99999999999999999999999999765 5 678
Q ss_pred CchhHH--HHhHhhcCC
Q 011677 423 TEDSFI--ADLSVGLAS 437 (479)
Q Consensus 423 t~d~~~--~dlAv~~~~ 437 (479)
|..++. +|||+++..
T Consensus 342 s~i~~~a~~hlaaa~~~ 358 (428)
T 3bjs_A 342 TGLNHAATIHFLAATEN 358 (428)
T ss_dssp SHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHhCCC
Confidence 877654 788887754
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-41 Score=347.69 Aligned_cols=320 Identities=13% Similarity=0.096 Sum_probs=223.3
Q ss_pred ceeeEEEEEEEecC----CCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHh
Q 011677 45 SVITKIKARQILDS----RGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120 (479)
Q Consensus 45 ~~I~~I~~~~i~ds----~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~ 120 (479)
|+|++|+++.+--. .++..+.|+|+|++|++ |+||+... .+. ...+...+++.++|.
T Consensus 2 MkIt~i~~~~v~~plp~~~~~~~~~V~v~td~G~~----------G~GE~~~~------~~~---~~~~~~~i~~~l~p~ 62 (404)
T 4e5t_A 2 MRLSDIETFVVGNPPPRHGGRYFIFVKLVTACGIT----------GYGEIYNA------TFG---PDLVAKMAEDVFARQ 62 (404)
T ss_dssp CCEEEEEEEEEECCTTCTTCSEEEEEEEEETTSCE----------EEEEECCC------SSC---HHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEeccCCcccCCCceEEEEEEECCCCE----------EEEeeccC------CCc---hHHHHHHHHHHHHHH
Confidence 79999999998532 14568999999999994 99998542 122 234455677788999
Q ss_pred hcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCc-
Q 011677 121 LVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGK- 199 (479)
Q Consensus 121 LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~- 199 (479)
|+|+||.+.+++|+.|++.......+.....|++|||+||||++||.+|+|||+|||| ..+.++|+ |+.+....
T Consensus 63 liG~dp~~~e~~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~~--y~~~~~~~~ 137 (404)
T 4e5t_A 63 FAGEDPHHIEKLWHKTYGAGYTQRPDVTVMGVLSGLEMACWDIIGKAAGKPAYELLGG---KVHERLRS--YTYLYPTDG 137 (404)
T ss_dssp TTTSCTTCHHHHHHHHHTTTSCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTC---CCCSSEEE--EEECCC---
T ss_pred hcCCChhHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHcCC---CCcCeEEE--EEEeccccc
Confidence 9999999999999999753211111223467999999999999999999999999998 34455555 54321100
Q ss_pred c--CCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCC---CCchHHHHHHHHHHHH
Q 011677 200 H--AGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPN---ISSIREGLDLVKEAIN 274 (479)
Q Consensus 200 ~--~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~---~~~~~~~l~~v~~ai~ 274 (479)
| -+...+.. +...+...+++.+...++|+++| .|.|.... +..|. .+. .+.+.+.++.||+++
T Consensus 138 ~~~p~~d~~~~----~~~~e~~~~~a~~~~~~G~~~~K----lK~g~~~~--~~~g~-~~~~~~~~~d~~~v~avR~a~- 205 (404)
T 4e5t_A 138 DVYPDPDKPNV----YNDADMAAEAAAKAVDQGFTAVK----FDPAGAYT--IYDGH-QPSLEDLERSEAFCKQIRAAV- 205 (404)
T ss_dssp -------CCCT----TTCHHHHHHHHHHHHHHTCSEEE----ECCSCCCB--TTCSB-CCCHHHHHHHHHHHHHHHHHH-
T ss_pred ccccccccccc----CCCHHHHHHHHHHHHHcCCCEEe----eCCCCCCc--ccccc-cccHHHHHHHHHHHHHHHHHc-
Confidence 0 00000000 00111223344444455665555 45442111 11111 121 223455566666665
Q ss_pred hcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh
Q 011677 275 RTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC 353 (479)
Q Consensus 275 ~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~ 353 (479)
|.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|++++
T Consensus 206 --G~d-~~l~vDan-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~~~~~~~~l~~~~ 258 (404)
T 4e5t_A 206 --GTK-ADLLFGTH-----------------------GQFTVSGAKRLA-RRLEAYDPLWFEEPIPPEKPEDMAEVARYT 258 (404)
T ss_dssp --GGG-SEEEECCC-----------------------SCBCHHHHHHHH-HHHGGGCCSEEECCSCTTCHHHHHHHHHHC
T ss_pred --CCC-CeEEEeCC-----------------------CCcCHHHHHHHH-HHHhhcCCcEEECCCCcccHHHHHHHHhhC
Confidence 533 345 8873 367889999875 568999999999999999999999999999
Q ss_pred -hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHH
Q 011677 354 -QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIAD 430 (479)
Q Consensus 354 -~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~d 430 (479)
+||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|+++ +.|+. ++.. +..+|
T Consensus 259 ~iPIa~dE~~~-~~~~~~~~i~~~a~d~v------~~d~~~~GGit~~~~ia~~A~~~gi~~-~~h~~-~s~i~~aa~~h 329 (404)
T 4e5t_A 259 SIPVATGERLC-TKYEFSRVLETGAASIL------QMNLGRVGGLLEAKKIAAMAECHSAQI-APHLY-CGPLVALANIQ 329 (404)
T ss_dssp SSCEEECTTCC-HHHHHHHHHHHTCCSEE------CCCTTTSSCHHHHHHHHHHHHHTTCEE-CCCCS-SCHHHHHHHHH
T ss_pred CCCEEeCCCcC-CHHHHHHHHHhCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCEE-eecCC-CcHHHHHHHHH
Confidence 9999999864 59999999999999999 999999999999999999999999997 55754 3444 45566
Q ss_pred hHhhcC
Q 011677 431 LSVGLA 436 (479)
Q Consensus 431 lAv~~~ 436 (479)
||.++.
T Consensus 330 laaa~p 335 (404)
T 4e5t_A 330 LATCSP 335 (404)
T ss_dssp HHHTCT
T ss_pred HHHhCC
Confidence 666653
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=346.55 Aligned_cols=304 Identities=17% Similarity=0.152 Sum_probs=226.5
Q ss_pred ceeeEEEEEEEe-----------cC-CC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHH
Q 011677 45 SVITKIKARQIL-----------DS-RG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNR 108 (479)
Q Consensus 45 ~~I~~I~~~~i~-----------ds-~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~ 108 (479)
|+|++|+.+.+. .+ ++ .+++.|+|+|++|++ |+||+.. ++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~-----------~~~-- 57 (382)
T 1rvk_A 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQE----------GHSFTAP-----------EIV-- 57 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCE----------EEEEECG-----------GGG--
T ss_pred CeEeEEEEEEEecCCCCcccccccccccccccceEEEEEEEECCCCE----------EEEEecC-----------chH--
Confidence 689999988762 12 12 346899999999984 9999851 111
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCC-CchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCccc
Q 011677 109 AVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKK-GELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTL 187 (479)
Q Consensus 109 av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~-~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~ 187 (479)
+...|++.++|.|+|+||.+++.+|+.|.+. +.+. +++..+|++|||+||||+.||..|+|||++||| . +.
T Consensus 58 ~~~~i~~~l~~~l~g~d~~~~~~~~~~l~~~--~~~~g~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg---~-~~-- 129 (382)
T 1rvk_A 58 RPHVIEKFVKKVLIGEDHRDRERLWQDLAHW--QRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGG---Y-RD-- 129 (382)
T ss_dssp CHHHHHHTHHHHHTTSBTTCHHHHHHHHHHH--HTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCC---S-CS--
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHh--hhcccchHHHHHHHHHHHHHHHHhHhHhCCCHHHHhCC---C-CC--
Confidence 4456777799999999999999999999642 1111 334578999999999999999999999999998 3 33
Q ss_pred ccceEEeec-CCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHH
Q 011677 188 PVPAFTVIS-GGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGL 266 (479)
Q Consensus 188 Pvp~~~~i~-GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l 266 (479)
++|+|+.+. |+.|.++..+. ....+++.+...++|+.+| .|.|... +++.++.+.+.+.+
T Consensus 130 ~vp~~~~~~~g~~~~~~~~~~---------e~~~~~a~~~~~~Gf~~iK----ik~g~~~------~~~~~~~~~~~e~v 190 (382)
T 1rvk_A 130 KVLAYGSIMCGDELEGGLATP---------EDYGRFAETLVKRGYKGIK----LHTWMPP------VSWAPDVKMDLKAC 190 (382)
T ss_dssp EEEEEEEECCCCCCTTTTSSH---------HHHHHHHHHHHHHTCSEEE----EECCCTT------STTCCCHHHHHHHH
T ss_pred cceecEEeccCccccccCCCH---------HHHHHHHHHHHHCCCCEEE----EcCCcCc------cccccchHHHHHHH
Confidence 455565444 55443221111 1234455555556666665 4544211 11223334445566
Q ss_pred HHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHH
Q 011677 267 DLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEH 345 (479)
Q Consensus 267 ~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g 345 (479)
+.||+++ |.+ ..+ +|++ +.||.++++++. +.+++|++.|||||++++|+++
T Consensus 191 ~avr~a~---g~d-~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iE~P~~~~~~~~ 242 (382)
T 1rvk_A 191 AAVREAV---GPD-IRLMIDAF-----------------------HWYSRTDALALG-RGLEKLGFDWIEEPMDEQSLSS 242 (382)
T ss_dssp HHHHHHH---CTT-SEEEEECC-----------------------TTCCHHHHHHHH-HHHHTTTCSEEECCSCTTCHHH
T ss_pred HHHHHHh---CCC-CeEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEeCCCChhhHHH
Confidence 6666655 644 456 8883 357889999876 5689999999999999999999
Q ss_pred HHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCc
Q 011677 346 TKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETE 424 (479)
Q Consensus 346 ~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~ 424 (479)
+++|++++ +||++||+..+|+++++++++.+++|+| ++|++++||||++++++++|+++|++++++ +.|+.
T Consensus 243 ~~~l~~~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~--~~~~~ 314 (382)
T 1rvk_A 243 YKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDIL------RTGVNDVGGITPALKTMHLAEAFGMECEVH--GNTAM 314 (382)
T ss_dssp HHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCCEEEC--CCSHH
T ss_pred HHHHHhhCCCCEEEeCCccCcHHHHHHHHHcCCCCEE------eeCchhcCCHHHHHHHHHHHHHcCCeEeec--CCCCH
Confidence 99999999 9999999876559999999999999999 999999999999999999999999998664 45554
Q ss_pred hhHHHHhHhhcCC
Q 011677 425 DSFIADLSVGLAS 437 (479)
Q Consensus 425 d~~~~dlAv~~~~ 437 (479)
.+|||+++..
T Consensus 315 ---~~~laaa~~~ 324 (382)
T 1rvk_A 315 ---NLHVVAATKN 324 (382)
T ss_dssp ---HHHHHHHCSS
T ss_pred ---HHHHHHhCCc
Confidence 8999998864
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=345.48 Aligned_cols=301 Identities=16% Similarity=0.108 Sum_probs=224.5
Q ss_pred CceeeEEEEEEEecC----C---CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHH
Q 011677 44 PSVITKIKARQILDS----R---GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINER 116 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds----~---g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~ 116 (479)
||+|++|+++.+-.. . +...+.|+|+|++|++ |+||.. ++...+...|++.
T Consensus 2 ~MkI~~i~~~~~~~P~~~~~~~~~~~~~~V~v~td~G~~----------G~GE~~------------~~~~~~~~~i~~~ 59 (374)
T 3sjn_A 2 VLKITDIEVLHLRVPAMDADCEWGEDAVIVKVHTDKGIV----------GVGEAD------------SSPLVVQACIEAP 59 (374)
T ss_dssp CCBEEEEEEEEEESSCTTSCCCTTSEEEEEEEEETTSCE----------EEEEES------------SCHHHHHHHHHCC
T ss_pred CcEEEEEEEEEEeccCcCCcCcccceEEEEEEEECCCCE----------EEEcCC------------CChHHHHHHHHhh
Confidence 589999999998422 1 1223899999999994 999921 2345556667666
Q ss_pred --------HHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccc
Q 011677 117 --------ISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLP 188 (479)
Q Consensus 117 --------l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~P 188 (479)
++|.|+|+||.+.+++|+.|.+.......+++...|++|||+||||+.||.+|+|||++||| ..+.++|
T Consensus 60 ~~~~~~~~l~p~liG~d~~~~~~~~~~l~~~~~~~~~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg---~~r~~v~ 136 (374)
T 3sjn_A 60 QTNFYCNGLKRLLIGENALEIERLWNKMYWGSNYMGRRGAGIHAISAIDIALWDIAGQFYGVPVHTLLGG---KYRDKIR 136 (374)
T ss_dssp CSBTTBCCHHHHHTTSBTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSCSEEE
T ss_pred hccchHhHHHHHHcCCCcccHHHHHHHHHHhhhhcCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCC---CcCCcee
Confidence 99999999999999999999863221123456778999999999999999999999999998 3345555
Q ss_pred cceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHH
Q 011677 189 VPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDL 268 (479)
Q Consensus 189 vp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~ 268 (479)
+ |. |.... + ..+...+++.+...++|+.+| .|.|. .| .+.+.+.+.++.
T Consensus 137 ~--y~----~~~~~---~--------~~e~~~~~a~~~~~~Gf~~iK----lk~g~-------~g---~~~~~d~~~v~a 185 (374)
T 3sjn_A 137 C--YG----TFIPA---D--------KPEDNVAIVQGLKDQGFSSIK----FGGGV-------MG---DDPDTDYAIVKA 185 (374)
T ss_dssp E--EE----EECCC---S--------SGGGGHHHHHHHHTTTCSEEE----EECTT-------TT---SCHHHHHHHHHH
T ss_pred E--Ee----ccCCC---C--------CHHHHHHHHHHHHHcCCCEEE----eccCC-------CC---CCHHHHHHHHHH
Confidence 5 51 11110 0 012344555555556676665 45431 11 122345566666
Q ss_pred HHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCC-HHHHHHHHHHHHhhCCceeeecCCCccCHHHH
Q 011677 269 VKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKS-GEDMIEMYKELCADYPIVSIEDPFDKEDWEHT 346 (479)
Q Consensus 269 v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t-~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~ 346 (479)
||+++ |.+ ..+ +|+| +.|| .++++++. +.++++++.|||||++++|++++
T Consensus 186 vR~a~---g~~-~~l~vDan-----------------------~~~~d~~~A~~~~-~~l~~~~i~~iEqP~~~~~~~~~ 237 (374)
T 3sjn_A 186 VREAA---GPE-MEVQIDLA-----------------------SKWHTCGHSAMMA-KRLEEFNLNWIEEPVLADSLISY 237 (374)
T ss_dssp HHHHH---CSS-SEEEEECT-----------------------TTTCSHHHHHHHH-HHSGGGCCSEEECSSCTTCHHHH
T ss_pred HHHHh---CCC-CeEEEECC-----------------------CCCCCHHHHHHHH-HHhhhcCceEEECCCCcccHHHH
Confidence 66665 644 456 8883 3678 89999875 55899999999999999999999
Q ss_pred HHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch
Q 011677 347 KSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED 425 (479)
Q Consensus 347 ~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d 425 (479)
++|++++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|+++++ |+. ++..
T Consensus 238 ~~l~~~~~iPIa~dE~~~-~~~~~~~~l~~~~~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~-h~~-~~~i 308 (374)
T 3sjn_A 238 EKLSRQVSQKIAGGESLT-TRYEFQEFITKSNADIV------QPDITRCGGITEMKKIYDIAQMNGTQLIP-HGF-STGI 308 (374)
T ss_dssp HHHHHHCSSEEEECTTCC-HHHHHHHHHHHHCCSEE------CCBTTTSSHHHHHHHHHHHHHHHTCEECC-BCC-SCHH
T ss_pred HHHHhhCCCCEEeCCCcC-CHHHHHHHHHcCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEEEe-cCC-CcHH
Confidence 9999999 9999999865 59999999999999999 99999999999999999999999999865 555 5544
Q ss_pred --hHHHHhHhhcCC
Q 011677 426 --SFIADLSVGLAS 437 (479)
Q Consensus 426 --~~~~dlAv~~~~ 437 (479)
++.+||+.++..
T Consensus 309 ~~aa~~hlaaa~~~ 322 (374)
T 3sjn_A 309 LLHASVHFLAACEQ 322 (374)
T ss_dssp HHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 456677766543
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=346.70 Aligned_cols=299 Identities=16% Similarity=0.131 Sum_probs=228.8
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.+ ++++.|+|+| +|++ |+||+.++.+ +.|.+++...+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-~G~~----------G~GE~~~~~~---~~~~~e~~~~~~~~ 66 (370)
T 1nu5_A 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLV----------GIGEGGSVGG---PTWGSESAETIKVI 66 (370)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEE----------EEEEECCSTT---TTTSSCCHHHHHHH
T ss_pred CEEEEEEEEEEEccccCCEEecceEEEeceeEEEEEEE-CCEE----------EEEEeccCCC---CcccCCCHHHHHHH
Confidence 689999988772 2222 3578999999 8984 9999876421 46888889889889
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+++.++|.|+|+||.+++++|+.|.+... + ..+|++|||+||||+.||.+|+|||++||| ..+.++|++
T Consensus 67 i~~~l~~~l~G~d~~~~~~~~~~l~~~~~----~--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~~~~~v~~~-- 135 (370)
T 1nu5_A 67 IDNYLAPLLVGKDASNLSQARVLMDRAVT----G--NLSAKAAIDIALHDLKARALNLSIADLIGG---TMRTSIPIA-- 135 (370)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHCS----S--CHHHHHHHHHHHHHHHHHHTTCBHHHHHTC---CSCSEEEBC--
T ss_pred HHHhhHHHHcCCCcccHHHHHHHHHHHhc----C--CHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---CcCCceEee--
Confidence 98889999999999999999999976431 1 257999999999999999999999999998 334566664
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHH-HHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGS-ETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~-e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
..++++ +. + ...+++.+... ++|+.+| .|.| . ++.+.+.+.++.||+
T Consensus 136 ~~~~~~-------~~-e--------~~~~~a~~~~~~~Gf~~iK----ik~g-------~-----~~~~~~~e~v~avr~ 183 (370)
T 1nu5_A 136 WTLASG-------DT-A--------RDIDSALEMIETRRHNRFK----VKLG-------A-----RTPAQDLEHIRSIVK 183 (370)
T ss_dssp EEECSS-------CH-H--------HHHHHHHHHHHTTSCSEEE----EECS-------S-----SCHHHHHHHHHHHHH
T ss_pred EEecCC-------CH-H--------HHHHHHHHHHHhCCccEEE----EecC-------C-----CChHHHHHHHHHHHH
Confidence 444332 11 1 12334444444 4555544 3422 1 122345667777777
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
++ |.+ ..+ +|+| +.||.++++++. +.+++|++.|||||++++|+++|++|+
T Consensus 184 a~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l~ 235 (370)
T 1nu5_A 184 AV---GDR-ASVRVDVN-----------------------QGWDEQTASIWI-PRLEEAGVELVEQPVPRANFGALRRLT 235 (370)
T ss_dssp HH---GGG-CEEEEECT-----------------------TCCCHHHHHHHH-HHHHHHTCCEEECCSCTTCHHHHHHHH
T ss_pred hc---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCcceEeCCCCcccHHHHHHHH
Confidence 76 433 345 8883 357889999875 568999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHH-
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFI- 428 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~- 428 (479)
+++ +||++||+. +++++++++++.+++|++ ++|++++||+|++++++++|+++|++++++| +.|+..+..
T Consensus 236 ~~~~ipIa~dE~~-~~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~-~~es~i~~aa 307 (370)
T 1nu5_A 236 EQNGVAILADESL-SSLSSAFELARDHAVDAF------SLKLCNMGGIANTLKVAAVAEAAGISSYGGT-MLDSTVGTAA 307 (370)
T ss_dssp HHCSSEEEESTTC-CSHHHHHHHHHTTCCSEE------EECHHHHTSHHHHHHHHHHHHHHTCEEEECC-SSCCHHHHHH
T ss_pred HhCCCCEEeCCCC-CCHHHHHHHHHhCCCCEE------EEchhhcCCHHHHHHHHHHHHHcCCcEEecC-CcchHHHHHH
Confidence 999 999999975 669999999999999999 9999999999999999999999999987766 468776554
Q ss_pred -HHhHhhcC
Q 011677 429 -ADLSVGLA 436 (479)
Q Consensus 429 -~dlAv~~~ 436 (479)
+|||.++.
T Consensus 308 ~~hlaaa~~ 316 (370)
T 1nu5_A 308 ALHVYATLP 316 (370)
T ss_dssp HHHHHTTSS
T ss_pred HHHHHhcCC
Confidence 55555543
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=349.68 Aligned_cols=299 Identities=20% Similarity=0.221 Sum_probs=231.3
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.+ ++++.|+|+|++|+ +|+||+.++ +.|.+++..++...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~----------~G~GE~~~~-----~~~~~~~~~~~~~~ 65 (369)
T 2p8b_A 1 MKITAIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGI----------IGYGEGVAD-----DHVTGESWESTFHT 65 (369)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSC----------EEEEEECCC-----HHHHSCCHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCeEecceeEEeeeEEEEEEEECCCC----------EEEEEecCC-----CCcCCCCHHHHHHH
Confidence 689999988772 2322 35799999999998 499998764 34677888888888
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+++.++|.|+|+|+.+++++|+.|.+... + ..+|++|||+||||+.||..|+|||++||| ..+.++|+ +
T Consensus 66 i~~~l~~~l~g~d~~~~~~~~~~l~~~~~----~--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~~~~~v~~--~ 134 (369)
T 2p8b_A 66 LKHTLTPALIGQNPMNIEKIHDMMDNTIY----G--VPTAKAAIDIACFDIMGKKLNQPVYQLIGG---RYHEEFPV--T 134 (369)
T ss_dssp HHHTHHHHHTTCCTTCHHHHHHHHHHHCS----C--CHHHHHHHHHHHHHHHHHHTTSBGGGGTTC---CCCSCEEC--C
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHhc----C--ChHHHHHHHHHHHHHHHHHcCCcHHHHhCC---CCCCceee--e
Confidence 98889999999999999999999976431 1 257999999999999999999999999998 33445565 4
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEA 272 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~a 272 (479)
..++++ +.++ ..+++.+...++|+.+| .|.| . +.+.+.+.++.||++
T Consensus 135 ~~i~~~-------~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~------~~~~~~e~v~avr~a 181 (369)
T 2p8b_A 135 HVLSIA-------DPEN---------MAEEAASMIQKGYQSFK----MKVG-------T------NVKEDVKRIEAVRER 181 (369)
T ss_dssp EEECSC-------CHHH---------HHHHHHHHHHTTCCEEE----EECC-------S------CHHHHHHHHHHHHHH
T ss_pred EEecCC-------ChHH---------HHHHHHHHHHcCcCEEE----EEeC-------C------CHHHHHHHHHHHHHH
Confidence 444432 1121 23444444445555554 3322 1 123345666666666
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHH-HHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMI-EMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i-~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
+ |.+ ..+ +|++ +.||.++++ ++. +.+++|++.|||||++++|+++|++|+
T Consensus 182 ~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~ 233 (369)
T 2p8b_A 182 V---GND-IAIRVDVN-----------------------QGWKNSANTLTAL-RSLGHLNIDWIEQPVIADDIDAMAHIR 233 (369)
T ss_dssp H---CTT-SEEEEECT-----------------------TTTBSHHHHHHHH-HTSTTSCCSCEECCBCTTCHHHHHHHH
T ss_pred h---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HHHHhCCCcEEECCCCcccHHHHHHHH
Confidence 6 644 455 8883 256778998 886 458999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIA 429 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~ 429 (479)
+++ +||++||+. +++++++++++.+++|++ ++|++++||+|++++++++|+++|++++++|+ .|+..+..+
T Consensus 234 ~~~~iPI~~dE~~-~~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~-~es~i~~~a 305 (369)
T 2p8b_A 234 SKTDLPLMIDEGL-KSSREMRQIIKLEAADKV------NIKLMKCGGIYPAVKLAHQAEMAGIECQVGSM-VESSVASSA 305 (369)
T ss_dssp HTCCSCEEESTTC-CSHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEECCS-SCCHHHHHH
T ss_pred HhCCCCEEeCCCC-CCHHHHHHHHHhCCCCEE------EeecchhCCHHHHHHHHHHHHHcCCcEEecCC-CccHHHHHH
Confidence 999 999999986 569999999999999999 99999999999999999999999999988764 688887776
Q ss_pred HhHhhcCCC
Q 011677 430 DLSVGLASG 438 (479)
Q Consensus 430 dlAv~~~~~ 438 (479)
+++++...+
T Consensus 306 ~~~laa~~~ 314 (369)
T 2p8b_A 306 GFHVAFSKK 314 (369)
T ss_dssp HHHHHTTCT
T ss_pred HHHHHHcCC
Confidence 666665443
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=345.89 Aligned_cols=295 Identities=18% Similarity=0.172 Sum_probs=225.5
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
||+|++|+.+.+. ++.+ ...+.|+|+|++|++ |+||+... +.|.+++...+..
T Consensus 2 ~MkI~~i~~~~~~~Pl~~p~~~a~~~~~~~~~~~V~v~td~G~~----------G~Ge~~~~-----~~~~get~~~~~~ 66 (379)
T 3r0u_A 2 VSKIIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVK----------GYGVAPAT-----TAITGDTLQGMQY 66 (379)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEEECC-----HHHHCCCHHHHHH
T ss_pred CCEEEEEEEEEEEeecCCceEccCceEEEeEEEEEEEEECCCCE----------EEEEEECC-----CCccCCCHHHHHH
Confidence 5899999988772 3333 357999999999984 99998764 2466777877778
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.|++.++|.|+|+||.+.+++|+.|.+... ...+|++|||+||||+.||..|+|||++||| . +.++|+
T Consensus 67 ~i~~~l~p~l~G~d~~~~~~~~~~~~~~~~------~~~~A~said~ALwDl~gK~~g~Pv~~LLGg---~-r~~v~~-- 134 (379)
T 3r0u_A 67 IIREIFAPVILGSDLSDYKQTLELAFKKVM------FNSAAKMAIDLAYHDLLAKEQDISVAKLLGA---K-ANSIVT-- 134 (379)
T ss_dssp HHHHTTHHHHTTCBGGGHHHHHHHHHTTCS------SCHHHHHHHHHHHHHHHHHHTTSBHHHHTTC---C-CCEEEB--
T ss_pred HHHHHhHHHhcCCCcccHHHHHHHHHHhcc------cchHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CCeEEE--
Confidence 888889999999999999999998875311 1257999999999999999999999999998 3 455555
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
|..++.+ +. +...+++.+...++|+.+| .|.| .+.+.+.++++.||+
T Consensus 135 y~t~g~~-------~~---------e~~~~~a~~~~~~Gf~~~K----lK~g-------------~~~~~d~~~v~avR~ 181 (379)
T 3r0u_A 135 DVSISCG-------NV---------AETIQNIQNGVEANFTAIK----VKTG-------------ADFNRDIQLLKALDN 181 (379)
T ss_dssp CEEECCC-------CH---------HHHHHHHHHHHHTTCCEEE----EECS-------------SCHHHHHHHHHHHHH
T ss_pred EEEecCC-------CH---------HHHHHHHHHHHHcCCCEEe----eecC-------------CCHHHHHHHHHHHHH
Confidence 4433211 11 1123344444444555554 4433 122334555555555
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhh--CCceeeecCCCccCHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCAD--YPIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~--~~i~~iEdP~~~~D~~g~~~ 348 (479)
++ |.+ ..+ +|+| +.||.++++++. +.+++ +++.|||||++++|++++++
T Consensus 182 a~---g~~-~~L~vDaN-----------------------~~w~~~~A~~~~-~~l~~~~~~l~~iEeP~~~~d~~~~~~ 233 (379)
T 3r0u_A 182 EF---SKN-IKFRFDAN-----------------------QGWNLAQTKQFI-EEINKYSLNVEIIEQPVKYYDIKAMAE 233 (379)
T ss_dssp HC---CTT-SEEEEECT-----------------------TCCCHHHHHHHH-HHHHTSCCCEEEEECCSCTTCHHHHHH
T ss_pred hc---CCC-CeEEEeCC-----------------------CCcCHHHHHHHH-HHHhhcCCCcEEEECCCCcccHHHHHH
Confidence 44 644 456 8983 367889999875 55899 88999999999999999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED-- 425 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d-- 425 (479)
|++++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|++++++ ++.|+..
T Consensus 234 l~~~~~iPIa~dE~~-~~~~~~~~~i~~~a~d~v------~~k~~~~GGi~~~~~ia~~A~~~gi~~~~~-~~~es~i~~ 305 (379)
T 3r0u_A 234 ITKFSNIPVVADESV-FDAKDAERVIDEQACNMI------NIKLAKTGGILEAQKIKKLADSAGISCMVG-CMMESPAGI 305 (379)
T ss_dssp HHHHCSSCEEESTTC-SSHHHHHHHHHTTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEEC-CCSCCHHHH
T ss_pred HHhcCCCCEEeCCcc-CCHHHHHHHHHcCCCCEE------EECccccCCHHHHHHHHHHHHHcCCEEEEe-CCCccHHHH
Confidence 99999 999999976 569999999999999999 999999999999999999999999998764 4456644
Q ss_pred hHHHHhHhh
Q 011677 426 SFIADLSVG 434 (479)
Q Consensus 426 ~~~~dlAv~ 434 (479)
++.+|||++
T Consensus 306 aa~~hlaaa 314 (379)
T 3r0u_A 306 LATASFALA 314 (379)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 567777777
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=354.59 Aligned_cols=293 Identities=17% Similarity=0.166 Sum_probs=226.4
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. .+.+ +++++|+|+|++|++ |+||+..+.. +.|.++++.+++.
T Consensus 19 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~----------G~GE~~~~~~---~~~~~e~~~~~~~ 85 (393)
T 1wuf_A 19 HMYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIH----------GYGELEAFPL---PDYTEETLSSAIL 85 (393)
T ss_dssp CEECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCE----------EEEEECCCSS---TTSSSCCHHHHHH
T ss_pred cCEEEEEEEEEEeeeccCCeEecceeEecCcEEEEEEEECCCCE----------EEEEeecCCC---CcccCCCHHHHHH
Confidence 7899999998772 2332 357999999999984 9999876532 4688889988888
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.|++.++|.|+|+|+.+++.+|+.|..+.+ +.+|++|||+||||+.||..|+|||++||| . +.++|++.
T Consensus 86 ~i~~~l~p~l~G~d~~~~~~l~~~l~~~~g-------~~~a~~aid~AlwDl~gk~~g~Pl~~lLGg---~-~~~v~~~~ 154 (393)
T 1wuf_A 86 IIKEQLLPLLAQRKIRKPEEIQELFSWIQG-------NEMAKAAVELAVWDAFAKMEKRSLAKMIGA---T-KESIKVGV 154 (393)
T ss_dssp HHHHTTHHHHHHCEESSTTHHHHHHTTSCS-------CHHHHHHHHHHHHHHHHHHTTSBHHHHTTC---C-CSEEEBCE
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHccC-------chHHHHHHHHHHHHHHHHHhCCcHHHHhCC---C-CCcceeeE
Confidence 898889999999999999999998865432 257999999999999999999999999998 2 35666654
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
.++.+ . +.++ ..+++.+...++|+.+| .|. | + +.+.+.++.||+
T Consensus 155 --~~g~~----~--~~e~---------~~~~a~~~~~~G~~~~K----iKv-------g------~--~~d~~~v~avr~ 198 (393)
T 1wuf_A 155 --SIGLQ----Q--NVET---------LLQLVNQYVDQGYERVK----LKI-------A------P--NKDIQFVEAVRK 198 (393)
T ss_dssp --EECCC----S--CHHH---------HHHHHHHHHHHTCCEEE----EEC-------B------T--TBSHHHHHHHHT
T ss_pred --EeCCC----C--CHHH---------HHHHHHHHHHHhhHhhe----ecc-------C------h--HHHHHHHHHHHH
Confidence 32211 0 1121 24455555556666665 342 2 1 234566666655
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
++ .+ .++ +|+| +.||.+++ +++ +.+++|+|.|||||++++|+++|++|+
T Consensus 199 a~----~~-~~l~vDaN-----------------------~~~~~~~a-~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~ 248 (393)
T 1wuf_A 199 SF----PK-LSLMADAN-----------------------SAYNREDF-LLL-KELDQYDLEMIEQPFGTKDFVDHAWLQ 248 (393)
T ss_dssp TC----TT-SEEEEECT-----------------------TCCCGGGH-HHH-HTTGGGTCSEEECCSCSSCSHHHHHHH
T ss_pred Hc----CC-CEEEEECC-----------------------CCCCHHHH-HHH-HHHHhCCCeEEECCCCCcCHHHHHHHH
Confidence 54 12 356 9984 24566777 665 668999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIA 429 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~ 429 (479)
+++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|+++|++++. |+..+..+
T Consensus 249 ~~~~ipIa~dE~~-~~~~~~~~~i~~~a~d~v------~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~-es~i~~aa 320 (393)
T 1wuf_A 249 KQLKTRICLDENI-RSVKDVEQAHSIGSCRAI------NLKLARVGGMSSALKIAEYCALNEILVWCGGML-EAGVGRAH 320 (393)
T ss_dssp TTCSSEEEECTTC-CSHHHHHHHHHHTCCSEE------EECTGGGTSHHHHHHHHHHHHHTTCEEEECCCC-CCHHHHHH
T ss_pred HhCCCCEEECCCc-CCHHHHHHHHHhCCCCEE------EeChhhhCCHHHHHHHHHHHHHcCCeEEecCCc-ccHHHHHH
Confidence 999 999999975 569999999999999999 999999999999999999999999999887654 67665555
Q ss_pred HhHhh
Q 011677 430 DLSVG 434 (479)
Q Consensus 430 dlAv~ 434 (479)
.++++
T Consensus 321 ~~hla 325 (393)
T 1wuf_A 321 NIALA 325 (393)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=348.43 Aligned_cols=296 Identities=14% Similarity=0.095 Sum_probs=222.7
Q ss_pred CceeeEEEEEEEe--------cCCC-----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG-----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAV 110 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g-----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av 110 (479)
||+|++|+.+.+. ++.| ...+.|+|+|++|++ |+||+.++. .|. ++...+.
T Consensus 7 ~mkI~~i~~~~~~~Pl~~p~~~s~g~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~-----~~~-e~~~~~~ 70 (385)
T 3i6e_A 7 EQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAE----------GFGEASPWA-----VFT-GTPEASY 70 (385)
T ss_dssp CSBEEEEEEEEEECCC--------------CEEEEEEEEETTSCE----------EEEEECCCT-----TTT-CCHHHHH
T ss_pred hcEEEEEEEEEEecccCCCeeccCcEEeceeeEEEEEEEECCCCE----------EEEeeccCC-----CcC-CCHHHHH
Confidence 7899999999883 2222 246999999999994 999987642 233 5677777
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccc
Q 011677 111 KNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVP 190 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp 190 (479)
..|++.++|.|+|+|+.+.+++|+.|.+... + ..+|++|||+||||+.||..|+|||++||| ..+.++|+
T Consensus 71 ~~i~~~l~p~l~G~d~~~~~~~~~~l~~~~~----~--~~~A~said~ALwDl~gk~~g~Pl~~LLGg---~~r~~v~~- 140 (385)
T 3i6e_A 71 AALDRYLRPLVIGRRVGDRVAIMDEAARAVA----H--CTEAKAALDSALLDLAGRISNLPVWALLGG---KCRDTIPL- 140 (385)
T ss_dssp HHHHHTTHHHHTTCBGGGHHHHHHHHHHHSS----S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CSCSEEEB-
T ss_pred HHHHHHHHHHHCCCCccCHHHHHHHHHHHhc----C--CHHHHHHHHHHHHHHHHHHcCCcHHHHhCc---ccCCceEE-
Confidence 8888779999999999999999999976321 1 157999999999999999999999999998 33455555
Q ss_pred eEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 191 AFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 191 ~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
+..++.+ +. ....+++.+...++|+.+| .|.|. .+.+.+.+.++.||
T Consensus 141 -~~t~~~~-------~~---------~~~~~~a~~~~~~G~~~~K----~Kvg~------------~~~~~d~~~v~avR 187 (385)
T 3i6e_A 141 -SCSIANP-------DF---------DADIALMERLRADGVGLIK----LKTGF------------RDHAFDIMRLELIA 187 (385)
T ss_dssp -EEEECCS-------SH---------HHHHHHHHHHHHHTCCEEE----EECSS------------SCHHHHHHHHHHHH
T ss_pred -EEEcCCC-------CH---------HHHHHHHHHHHHcCCCEEE----EecCC------------CCHHHHHHHHHHHH
Confidence 5433221 11 1223445455555666555 45331 11233455555555
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L 349 (479)
+++ .+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|
T Consensus 188 ~a~----~~-~~l~vDan-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEqP~~~~d~~~~~~l 238 (385)
T 3i6e_A 188 RDF----PE-FRVRVDYN-----------------------QGLEIDEAVPRV-LDVAQFQPDFIEQPVRAHHFELMARL 238 (385)
T ss_dssp HHC----TT-SEEEEECT-----------------------TCCCGGGHHHHH-HHHHTTCCSCEECCSCTTCHHHHHHH
T ss_pred HhC----CC-CeEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCCcccHHHHHHH
Confidence 554 22 345 8983 356778888775 45799999999999999999999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS-- 426 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~-- 426 (479)
++++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|+ .|+..+
T Consensus 239 ~~~~~iPIa~dE~~-~~~~~~~~~~~~~~~d~v------~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~-~es~i~~a 310 (385)
T 3i6e_A 239 RGLTDVPLLADESV-YGPEDMVRAAHEGICDGV------SIKIMKSGGLTRAQTVARIAAAHGLMAYGGDM-FEAGLAHL 310 (385)
T ss_dssp HTTCSSCEEESTTC-CSHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEECCC-SCCHHHHH
T ss_pred HHhCCCCEEEeCCc-CCHHHHHHHHHcCCCCEE------EecccccCCHHHHHHHHHHHHHcCCEEEeCCC-CccHHHHH
Confidence 9999 999999976 459999999999999999 99999999999999999999999999977554 466554
Q ss_pred HHHHhHhhc
Q 011677 427 FIADLSVGL 435 (479)
Q Consensus 427 ~~~dlAv~~ 435 (479)
+.+||+.++
T Consensus 311 a~~hlaaa~ 319 (385)
T 3i6e_A 311 AGTHMIAAT 319 (385)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 455666554
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=353.90 Aligned_cols=306 Identities=15% Similarity=0.083 Sum_probs=225.5
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
||+| +|+.+.+. .+.+ +++++|+| |++|++ |+||+.++ +.|.++++..+..
T Consensus 2 m~~m-~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v-td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~ 64 (377)
T 2pge_A 2 LSGM-ELSYRRSDLIFKRPAGTSRGVLTSKPTWFVRL-DIDGHG----------GQGEVSLI-----PGLSLDPEEQIGR 64 (377)
T ss_dssp -CCC-EEEEEECCEEBCC-------CCCEECEEEEEE-EETTEE----------EEEEEECC-----TTTCSSCHHHHHH
T ss_pred Ccce-EEEEEEEeecccCcceeccEEEeecceEEEEE-EcCCCE----------EEEEeccC-----CCCCcCCHHHHHH
Confidence 5566 67776662 2222 56899999 999984 99999875 3577788888888
Q ss_pred HHHHHHHHhhcCCCC------------CCHHHHHHHHHhhhccC-----CCCchhhhHHHHHHHHHHHHHHHhcCchhHH
Q 011677 112 NINERISEALVGMDP------------ILQSQIDQAMIDLDKTE-----KKGELGANAILAVSIAACKAGAAEKEVPLYK 174 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~------------~~~~~id~~l~~~~~~~-----~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~ 174 (479)
.++ .+.|.|+|+|| .+.+.+|+.|.+++++. ..++...+|++|||+||||+.||..|+|||+
T Consensus 65 ~l~-~~~~~l~g~d~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~aid~Al~Dl~ak~~g~Pl~~ 143 (377)
T 2pge_A 65 ELD-LLARRLRAEEPIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGRQEWFAS 143 (377)
T ss_dssp HHH-HHHHHHHHSCCHHHHHHHHHTSSCTTSCHHHHHHHHHHHHHHTTSSTTSSCHHHHHHHHHHHHHHHHTSSSCSSCS
T ss_pred HHH-HHHHHHhCCCccchhhhhhccccccHHHHHHhhhhhhhhhhhcccccccccHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 887 68999999988 44467787776543221 1123457899999999999999999999999
Q ss_pred HHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCC
Q 011677 175 HIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGG 254 (479)
Q Consensus 175 lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~ 254 (479)
+||| . +.++|++ .+++++ +. |. ..+++.+...++|+.+| .|.| .
T Consensus 144 llGg---~-~~~vp~~--~~i~~~-------~~-e~--------~~~~a~~~~~~G~~~~K----~Kvg-------~--- 187 (377)
T 2pge_A 144 DFTR---G-EKRIPVN--GLIWMG-------EA-AF--------MQEQIEAKLAEGYGCLK----LKIG-------A--- 187 (377)
T ss_dssp TTTT---T-SCCEEBC--EEECCC-------CH-HH--------HHHHHHHHHHTTCSEEE----EEC------------
T ss_pred HhCC---C-CCeEEEe--EEecCC-------CH-HH--------HHHHHHHHHHHhhhhhe----eecC-------C---
Confidence 9998 3 3455654 444432 11 21 23455555556676665 3433 1
Q ss_pred CCCCCCchHHHHHHHHHHHHhcC-CCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCce
Q 011677 255 LAPNISSIREGLDLVKEAINRTG-IPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIV 332 (479)
Q Consensus 255 ~~~~~~~~~~~l~~v~~ai~~~g-~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~ 332 (479)
.++++.++.|+++.+.+| .+ ..+ +|+|. .||.+++++++ +.+++|+|.
T Consensus 188 -----~~~~~d~~~v~avr~~~g~~~-~~l~vDaN~-----------------------~~~~~~a~~~~-~~l~~~~i~ 237 (377)
T 2pge_A 188 -----IDFDKECALLAGIRESFSPQQ-LEIRVDANG-----------------------AFSPANAPQRL-KRLSQFHLH 237 (377)
T ss_dssp ------CHHHHHHHHHHHHHHSCTTT-CEEEEECTT-----------------------BBCTTTHHHHH-HHHHTTCCS
T ss_pred -----CChHHHHHHHHHHHHHcCCCC-ceEEEECCC-----------------------CCCHHHHHHHH-HHHhcCCCc
Confidence 123556666666555667 55 466 99842 45677888876 568999999
Q ss_pred eeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHH-HHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhC
Q 011677 333 SIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKR-IERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDV 410 (479)
Q Consensus 333 ~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~-~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~ 410 (479)
|||||++++|+++|++|++++ +||++||+..+..+. ++++++.+++|++ +||++++||||++++++++|+++
T Consensus 238 ~iEqP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~i~~~a~d~i------~ik~~~~GGit~~~~i~~~A~~~ 311 (377)
T 2pge_A 238 SIEQPIRQHQWSEMAALCANSPLAIALDEELIGLGAEQRSAMLDAIRPQYI------ILKPSLLGGFHYAGQWIELARER 311 (377)
T ss_dssp EEECCBCSSCHHHHHHHHHHCSSCEEESGGGTTCCTHHHHHHHHHHCCSEE------EECHHHHTSHHHHHHHHHHHHHT
T ss_pred EEEccCCcccHHHHHHHHhhCCCcEEECCccCCcchHHHHHHHHhCCCCEE------EECchhcCCHHHHHHHHHHHHHC
Confidence 999999999999999999999 999999988764333 7899999999999 99999999999999999999999
Q ss_pred CCeEEEecCCCCCchhHHHHhHhhcCCCCc
Q 011677 411 PWGVVISHRSGETEDSFIADLSVGLASGQI 440 (479)
Q Consensus 411 g~~~~v~h~~get~d~~~~dlAv~~~~~~i 440 (479)
|+++|++|+ .||..+..+.++++...+..
T Consensus 312 g~~~~~~~~-~es~i~~~a~~hlaa~~~~~ 340 (377)
T 2pge_A 312 GIGFWITSA-LESNLGLAAIAQWTALYQPT 340 (377)
T ss_dssp TCEEEEBCC-SCCHHHHHHHHHHHHTTCCS
T ss_pred CCeEEecCC-cccHHHHHHHHHHHHCCCCC
Confidence 999988876 68888766655555544443
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-41 Score=344.56 Aligned_cols=301 Identities=17% Similarity=0.112 Sum_probs=218.2
Q ss_pred ceeeEEEEEEEec---------CCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 45 SVITKIKARQILD---------SRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 45 ~~I~~I~~~~i~d---------s~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
|+|++|+++.+-- +.+ .+.+.|+|+|++|++ |+||+.... .+. +...+..
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~~a~~~~~~~~~v~V~v~td~G~~----------G~GE~~~~~-----~~~--~~~~~~~ 63 (372)
T 3tj4_A 1 MKITAVEPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIE----------GYGFTGTHA-----HLP--SDRLITS 63 (372)
T ss_dssp CBEEEEEEEEEEEECC------------EEEEEEEEEEETTSCE----------EEEEEEECC-----CHH--HHHHHHH
T ss_pred CEEEEEEEEEEEecCCCCccCCCccccCceeEEEEEEEECCCCE----------EEEeccCcc-----ccC--cHHHHHH
Confidence 6899999988731 111 246899999999994 999986531 001 1234455
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCC--chhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCccccc
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKG--ELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPV 189 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~--~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pv 189 (479)
.|++.++|.|+|+||.+.+++|+.|.+.......+ ++..+|++|||+||||+.||.+|+|||++||| ..+.+ +
T Consensus 64 ~i~~~l~p~liG~d~~~~~~~~~~l~~~~~~~~~g~~g~~~~A~said~AlwDl~gk~~g~Pv~~llGg---~~~~~--v 138 (372)
T 3tj4_A 64 CISDCYAPLLLGEDASDHSRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLGG---ARTAG--V 138 (372)
T ss_dssp HHHHTTHHHHTTSBTTCHHHHHHHHHTCHHHHTTCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSCSC--E
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHhhHhhcCCcccHHHHHHHHHHHHHHHHhccccCCcHHHHcCC---CCCCC--e
Confidence 67778999999999999999999998632111112 45578999999999999999999999999998 33333 4
Q ss_pred ceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHH-HHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHH
Q 011677 190 PAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSE-TYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDL 268 (479)
Q Consensus 190 p~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e-~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~ 268 (479)
|+|+.++ |... .+. +...+++.+...+ +|+.+| .|.|. ++.+.+.+.++.
T Consensus 139 ~~y~s~~-~~~~---~~~---------~~~~~~a~~~~~~~G~~~~K----~Kvg~------------~~~~~d~~~v~a 189 (372)
T 3tj4_A 139 EAYNTDI-GWLS---FTL---------EDLLAGSARAVEEDGFTRLK----IKVGH------------DDPNIDIARLTA 189 (372)
T ss_dssp EEEECTT-CCTT---SCH---------HHHHHHHHHHHHTTCCCEEE----EECCC------------SSHHHHHHHHHH
T ss_pred EEEEecC-CccC---CCH---------HHHHHHHHHHHHccCCCEEE----EcCCC------------CCHHHHHHHHHH
Confidence 5565432 2110 011 1223344444444 565554 45331 122334455555
Q ss_pred HHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHH
Q 011677 269 VKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK 347 (479)
Q Consensus 269 v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~ 347 (479)
||+++ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|+++++
T Consensus 190 vR~~~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~d~~~~~ 241 (372)
T 3tj4_A 190 VRERV---DSA-VRIAIDGN-----------------------GKWDLPTCQRFC-AAAKDLDIYWFEEPLWYDDVTSHA 241 (372)
T ss_dssp HHHHS---CTT-CEEEEECT-----------------------TCCCHHHHHHHH-HHTTTSCEEEEESCSCTTCHHHHH
T ss_pred HHHHc---CCC-CcEEeeCC-----------------------CCCCHHHHHHHH-HHHhhcCCCEEECCCCchhHHHHH
Confidence 55444 644 456 8883 367889999875 458999999999999999999999
Q ss_pred HHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC--CCCCc
Q 011677 348 SVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR--SGETE 424 (479)
Q Consensus 348 ~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~--~get~ 424 (479)
+|++++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|+++++ |+ ..+
T Consensus 242 ~l~~~~~iPIa~dE~~-~~~~~~~~~i~~~~~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~-h~g~~~~-- 311 (372)
T 3tj4_A 242 RLARNTSIPIALGEQL-YTVDAFRSFIDAGAVAYV------QPDVTRLGGITEYIQVADLALAHRLPVVP-HAGEMSQ-- 311 (372)
T ss_dssp HHHHHCSSCEEECTTC-CSHHHHHHHHHTTCCSEE------CCCTTTTTHHHHHHHHHHHHHHTTCCBCC-CCTTTTT--
T ss_pred HHHhhcCCCEEeCCCc-cCHHHHHHHHHcCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEEEe-cCchHHH--
Confidence 999999 999999976 569999999999999999 99999999999999999999999999755 54 333
Q ss_pred hhHHHHhHhhcC
Q 011677 425 DSFIADLSVGLA 436 (479)
Q Consensus 425 d~~~~dlAv~~~ 436 (479)
..+|++.++.
T Consensus 312 --~~~~l~aa~~ 321 (372)
T 3tj4_A 312 --VHVHLSYWHP 321 (372)
T ss_dssp --THHHHHHHCT
T ss_pred --HHHHHhhhCC
Confidence 3578888764
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=347.14 Aligned_cols=298 Identities=19% Similarity=0.164 Sum_probs=228.9
Q ss_pred ceeeEEEEEEEec--------CCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQILD--------SRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~d--------s~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+.- +.+ +++++|+|+|++|+ +|+||+.++++ .|.+++..++...
T Consensus 3 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~----------~G~GE~~~~~~----~~~~~~~~~~~~~ 68 (397)
T 2qde_A 3 LKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGL----------VGIADAGDTSS----WYRGETQDSITSM 68 (397)
T ss_dssp CCEEEEEEEEEEECCCC-----------EEEEEEEEEETTSC----------EEEEECCCCCT----TTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEeeeccCCeEeccceEeeCceEEEEEEECCCC----------EEEEEEecccC----ccCCCCHHHHHHH
Confidence 7999999998832 222 45899999999998 49999987642 4678888888888
Q ss_pred HHHHHHH-hhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 113 INERISE-ALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 113 i~~~l~p-~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
+++.++| .|+|+||.+++.+|+.|.. +. ++ ..+|++|||+||||+.||..|+|||++||| ..+. ++|+
T Consensus 69 i~~~l~~~~l~G~d~~~~~~l~~~l~~---~~-~~--~~~a~~aid~AlwDl~ak~~g~Pl~~llGg---~~~~--~vp~ 137 (397)
T 2qde_A 69 ICDFFAPKVLLGEDPTKIEKIVGRMDI---LT-RD--NNQAKATVDFALHDLVGKRFGVPVYQLLGG---KTIE--RIPL 137 (397)
T ss_dssp HHHTHHHHTTTTCCTTCHHHHHHHHHH---HC-SS--CHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSCS--SEEB
T ss_pred HHHhhhhHhhcCCChHhHHHHHHHhhh---hh-cc--chhHHHHHHHHHHHHHHHHhCCcHHHHhCC---CCCC--Ccce
Confidence 9888999 9999999999999998832 11 12 368999999999999999999999999998 3233 4555
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
|.+++.+ +.+ ...+++.+...++|+.+| .|.| . +.+.+.+.++.||+
T Consensus 138 ~~~~g~~-------~~e---------~~~~~a~~~~~~Gf~~vK----ik~g-------~------~~~~~~e~v~avR~ 184 (397)
T 2qde_A 138 GLVLGAG-------EPE---------AVAEEALAVLREGFHFVK----LKAG-------G------PLKADIAMVAEVRR 184 (397)
T ss_dssp CEECCCS-------CHH---------HHHHHHHHHHHHTCSCEE----EECC-------S------CHHHHHHHHHHHHH
T ss_pred EEECCCC-------CHH---------HHHHHHHHHHHhhhhhee----eccc-------C------CHHHHHHHHHHHHH
Confidence 6554211 111 123455555555665555 3422 1 22334566666766
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
++ |.+ ..| +|+| +.||.++++++. +.+++|++.|||||++++|+++|++|+
T Consensus 185 a~---g~d-~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l~ 236 (397)
T 2qde_A 185 AV---GDD-VDLFIDIN-----------------------GAWTYDQALTTI-RALEKYNLSKIEQPLPAWDLDGMARLR 236 (397)
T ss_dssp HH---CTT-SCEEEECT-----------------------TCCCHHHHHHHH-HHHGGGCCSCEECCSCTTCHHHHHHHH
T ss_pred hh---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHHhCCCCEEECCCChhhHHHHHHHH
Confidence 66 644 456 8883 357889999875 568999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--H
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--F 427 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~ 427 (479)
+++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|++++++++ .|+..+ +
T Consensus 237 ~~~~iPIa~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~-~es~ig~aa 308 (397)
T 2qde_A 237 GKVATPIYADESAQ-ELHDLLAIINKGAADGL------MIKTQKAGGLLKAQRWLTLARLANLPVICGCM-VGSGLEASP 308 (397)
T ss_dssp TTCSSCEEESTTCC-SHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHHTCCEEECCC-SCCHHHHHH
T ss_pred hhCCCCEEEeCCcC-CHHHHHHHHHcCCCCEE------EEeccccCCHHHHHHHHHHHHHcCCeEEEecC-cccHHHHHH
Confidence 999 9999999875 59999999999999999 99999999999999999999999999877554 466554 5
Q ss_pred HHHhHhhcC
Q 011677 428 IADLSVGLA 436 (479)
Q Consensus 428 ~~dlAv~~~ 436 (479)
.+|||.++.
T Consensus 309 ~~hlaa~~~ 317 (397)
T 2qde_A 309 AAHLLAAND 317 (397)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCC
Confidence 566666553
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=344.00 Aligned_cols=293 Identities=19% Similarity=0.176 Sum_probs=224.9
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
||+|++|+.+.+. .+.+ +++++|+|+|++|+ +|+||+.++ +.|.++++.+++.
T Consensus 1 MmkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~----------~G~GE~~~~-----~~~~~e~~~~~~~ 65 (345)
T 2zad_A 1 MSRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGV----------KGYGEASPS-----FRVNGERVEALLA 65 (345)
T ss_dssp -CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSC----------EEEEEECCC-----HHHHCCCHHHHHH
T ss_pred CCEEEEEEEEEEEeeccCCEEecCeeEeeceEEEEEEEECCCC----------EEEEEecCC-----CCcCCCCHHHHHH
Confidence 7899999998883 2222 45799999999998 499998764 3466788888888
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.+++ ++|.|+|+||.+++.+|+.| +.. +...+|++|||+||||+.||..|+|||++||| . +.++|++
T Consensus 66 ~i~~-l~~~l~g~d~~~~~~~~~~l-~~~------~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~-~~~v~~~- 132 (345)
T 2zad_A 66 IENA-VREMITGIDVRNYARIFEIT-DRL------FGFPSLKAAVQFATLDALSQELGTQVCYLLGG---K-RDEIETD- 132 (345)
T ss_dssp THHH-HHHHHTTCBGGGHHHHHHHH-TTC------TTSHHHHHHHHHHHHHHHHHHHTSCHHHHTTC---C-CSEEEBC-
T ss_pred HHHH-HHHHhCCCChhhHHHHHHHH-HHh------ccchHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CCceeee-
Confidence 8887 99999999999999999988 321 12468999999999999999999999999998 2 3566664
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
..++++ +.++ ..+++.+...++|+.+| .|.| . +.++.++.| +
T Consensus 133 -~~~~~~-------~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~---------~~~~d~~~v-~ 174 (345)
T 2zad_A 133 -KTVGID-------TVEN---------RVKEAKKIFEEGFRVIK----IKVG-------E---------NLKEDIEAV-E 174 (345)
T ss_dssp -EEECSC-------CHHH---------HHHHHHHHHHTTCSEEE----EECC-------S---------CHHHHHHHH-H
T ss_pred -EEecCC-------CHHH---------HHHHHHHHHHcCcCEEE----Eeec-------C---------CHHHHHHHH-H
Confidence 444332 1121 23455555555565555 3422 1 234445555 3
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCce--eeecCCCccCHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIV--SIEDPFDKEDWEHTKS 348 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~--~iEdP~~~~D~~g~~~ 348 (479)
+++++|.+ ..+ +|+| +.||.++++++. +.+++|++. |||||++++|+++|++
T Consensus 175 avr~~g~~-~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~~~iE~P~~~~~~~~~~~ 229 (345)
T 2zad_A 175 EIAKVTRG-AKYIVDAN-----------------------MGYTQKEAVEFA-RAVYQKGIDIAVYEQPVRREDIEGLKF 229 (345)
T ss_dssp HHHHHSTT-CEEEEECT-----------------------TCSCHHHHHHHH-HHHHHTTCCCSEEECCSCTTCHHHHHH
T ss_pred HHHhhCCC-CeEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCeeeeeCCCCcccHHHHHH
Confidence 33333644 456 8883 357889999876 458999999 9999999999999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh-
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS- 426 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~- 426 (479)
|++++ +||++||+.. ++++++++++.+++|++ ++|+++ ||+|++++++++|+++|++++++|+ .||..+
T Consensus 230 l~~~~~ipia~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~-GGit~~~~i~~~A~~~g~~~~~~~~-~es~i~~ 300 (345)
T 2zad_A 230 VRFHSPFPVAADESAR-TKFDVMRLVKEEAVDYV------NIKLMK-SGISDALAIVEIAESSGLKLMIGCM-GESSLGI 300 (345)
T ss_dssp HHHHSSSCEEESTTCC-SHHHHHHHHHHTCCSEE------EECHHH-HHHHHHHHHHHHHHTTTCEEEECCS-SCCHHHH
T ss_pred HHHhCCCCEEEeCCcC-CHHHHHHHHHhCCCCEE------EEeccc-ccHHHHHHHHHHHHHcCCeEEEecC-cccHHHH
Confidence 99999 9999999865 69999999999999999 999999 9999999999999999999988765 677664
Q ss_pred -HHHHhHhhcC
Q 011677 427 -FIADLSVGLA 436 (479)
Q Consensus 427 -~~~dlAv~~~ 436 (479)
+.+|||.++.
T Consensus 301 aa~~hlaa~~~ 311 (345)
T 2zad_A 301 NQSVHFALGTG 311 (345)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHcCC
Confidence 5667776664
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=343.58 Aligned_cols=300 Identities=14% Similarity=0.138 Sum_probs=216.6
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
+|+|++|+.... .+.+.|+|+|++|++ |+||+.. |.. ..+...+.+.++|.|+|
T Consensus 22 ~mkIt~v~~~~~-----~~~~~V~v~Td~G~~----------G~GE~~~--------~~~---~~~~~~i~~~l~p~LiG 75 (388)
T 3tcs_A 22 SMKLKAIETFTN-----DAVGFVRVTTQDGAQ----------GWGQVST--------YHA---DITCTVLHRQVAPWMLG 75 (388)
T ss_dssp -CBEEEEEEEEC-----SSCEEEEEEETTSCE----------EEEECCS--------SSH---HHHHHHHHHHTHHHHTT
T ss_pred ccEEEEEEEEEe-----CCeEEEEEEECCCCE----------EEEeccC--------Ccc---HHHHHHHHHHHHHHhCC
Confidence 689999998753 246899999999994 9999753 332 23445577889999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+||.+.+++|+.|.+.. ....+....+|++|||+||||+.||.+|+|||++||| . +.+ +|+|+...+.
T Consensus 76 ~d~~~~e~l~~~~~~~~-~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGg---~-~~~--v~~y~s~~~~----- 143 (388)
T 3tcs_A 76 QDITDLDDLLDIVTERE-HKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGG---T-PGL--IRAYASSMKR----- 143 (388)
T ss_dssp SBCTTHHHHHHHHHHHT-TTCCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---C-CEE--EEEEEECCCS-----
T ss_pred CCcccHHHHHHHHHHhh-hccCCcHHHHHHHHHHHHHHHHHHhHcCCcHHHHhCC---C-CCc--eEEEEecCcC-----
Confidence 99999999999997532 1122334457999999999999999999999999998 3 234 5556532110
Q ss_pred cccccceeeccCCCCcHHHHHHH-HHHHHHHHHHHHHhhhCCCCcccCCCCCCCC--CCCchHHHHHHHHHHHHhcCCCC
Q 011677 204 NLAIQDIMILPIGASSFGEALQM-GSETYHHLKAVIAEKYGAHGCNVGEDGGLAP--NISSIREGLDLVKEAINRTGIPS 280 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~-~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~--~~~~~~~~l~~v~~ai~~~g~~~ 280 (479)
.++. ....+++.+. ..++|+.+| .|.|.. .+... ..+.+.+.++.||+++ |.+
T Consensus 144 ~~~~---------~~~~~~~~~~~~~~Gf~~~K----~KvG~~-------~~~d~~~~~~~~~~~v~avReav---G~d- 199 (388)
T 3tcs_A 144 DITP---------RDEAERLKRLRDTQGFTAFK----VRAGAE-------VGRNRDEWPGRTEEIIPTMRREL---GDD- 199 (388)
T ss_dssp SSCH---------HHHHHHHHHHHHHHCCCEEE----EECSCT-------TCTTCCSSTTHHHHHHHHHHHHH---CSS-
T ss_pred CCCh---------HHHHHHHHHHHHhcCCCEEE----EccCCC-------cccccccchhHHHHHHHHHHHHh---CCC-
Confidence 0111 1112222222 134555554 454421 11000 0112345666666666 644
Q ss_pred Cce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhc
Q 011677 281 SKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVG 358 (479)
Q Consensus 281 ~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~g 358 (479)
..+ +|+| +.||.++++++. +.+++|++.|||||++++|++++++|++++ +||++
T Consensus 200 ~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~ 255 (388)
T 3tcs_A 200 VDLLIDAN-----------------------SCYTPDRAIEVG-HMLQDHGFCHFEEPCPYWELAQTKQVTDALDIDVTG 255 (388)
T ss_dssp SEEEEECT-----------------------TCCCHHHHHHHH-HHHHHTTCCEEECCSCTTCHHHHHHHHHHCSSCEEE
T ss_pred CeEEEeCC-----------------------CCcCHHHHHHHH-HHHhhcCCeEEECCCCccCHHHHHHHHHhcCCCEEc
Confidence 456 8883 367889999875 558999999999999999999999999999 99999
Q ss_pred CCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCC-chhHHHHhHhhcCC
Q 011677 359 DDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGET-EDSFIADLSVGLAS 437 (479)
Q Consensus 359 de~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get-~d~~~~dlAv~~~~ 437 (479)
||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|++++ +|+..++ .....+||+.++.+
T Consensus 256 dE~~-~~~~~~~~~i~~~a~d~v------~~d~~~~GGit~a~kia~~A~~~gv~~~-~h~~~~~~~~~a~~hl~aa~pn 327 (388)
T 3tcs_A 256 GEQD-CDLPTWQRMIDMRAVDIV------QPDILYLGGICRTLRVVEMARAAGLPVT-PHCANWSLVTLFTMHLLRAIPN 327 (388)
T ss_dssp CTTC-CCHHHHHHHHHHTCCSEE------CCCHHHHTSHHHHHHHHHHHHHTTCCBC-CCCCSTTTHHHHHHHHHTTCTT
T ss_pred CCcc-CCHHHHHHHHHcCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEEE-ecCCCcHHHHHHHHHHHHhCCC
Confidence 9976 569999999999999999 9999999999999999999999999975 5655443 22355677777644
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-41 Score=344.23 Aligned_cols=295 Identities=16% Similarity=0.144 Sum_probs=221.3
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. ++.+ ++.+.|+|+|++|++ |+||+..+. + +...++.
T Consensus 26 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~----------G~GE~~~~~--------~-~~~~~~~ 86 (383)
T 3toy_A 26 TAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVT----------GHSYLFAYT--------R-LALKPLV 86 (383)
T ss_dssp CCBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESSSCE----------EEEEEECSS--------G-GGHHHHH
T ss_pred CCEEEEEEEEEEeccCCCcccCccccccceeEEEEEEEECCCCE----------EEEEeeCCC--------C-chHHHHH
Confidence 5799999998873 2332 357999999999994 999986531 1 2234555
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.+.+.++|.|+|+|+.+.+ +|+.|.+.......+++..+|++|||+||||+.||..|+|||++||| . +.+ +|+
T Consensus 87 ~i~~~l~p~l~G~d~~~~e-~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg---~-~~~--v~~ 159 (383)
T 3toy_A 87 HLVEDIGRELAGKALVPVD-LMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGG---S-ARP--IPA 159 (383)
T ss_dssp HHHHHHHHHTTTCBCCHHH-HHHHHHHHTTTTCCSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---C-CCC--EEE
T ss_pred HHHHHHHHHhCCCCCCcHH-HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CCc--eEE
Confidence 6778899999999999999 99999763211112335568999999999999999999999999998 2 234 555
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHH-HHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSE-TYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e-~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
|+. +|.. + .+...+++.+...+ +|+.+| .|.|. .+.+.+.+.++.||
T Consensus 160 y~s--~g~~-----~---------~e~~~~~a~~~~~~~G~~~~K----lKvG~------------~~~~~d~~~v~avR 207 (383)
T 3toy_A 160 YDS--YGVL-----D---------ARDDERTLRTACDEHGFRAIK----SKGGH------------GDLATDEAMIKGLR 207 (383)
T ss_dssp EEE--CSSC-----C---------HHHHHHHHHHHHHTSCCCEEE----EECCS------------SCHHHHHHHHHHHH
T ss_pred eEe--cCCC-----C---------HHHHHHHHHHHHHccCCcEEE----EecCC------------CCHHHHHHHHHHHH
Confidence 654 2310 1 11234444444444 565554 45331 12334566666666
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L 349 (479)
+++ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|
T Consensus 208 ~a~---G~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l 259 (383)
T 3toy_A 208 ALL---GPD-IALMLDFN-----------------------QSLDPAEATRRI-ARLADYDLTWIEEPVPQENLSGHAAV 259 (383)
T ss_dssp HHH---CTT-SEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCCSEEECCSCTTCHHHHHHH
T ss_pred HHh---CCC-CeEEEeCC-----------------------CCCCHHHHHHHH-HHHHhhCCCEEECCCCcchHHHHHHH
Confidence 666 644 456 8883 367889999875 55899999999999999999999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHH
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFI 428 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~ 428 (479)
++++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|+++++ |++. .+.
T Consensus 260 ~~~~~iPIa~dE~~~-~~~~~~~~i~~~a~d~v------~ik~~~~GGit~~~~ia~~A~~~gi~~~~-h~~~----~a~ 327 (383)
T 3toy_A 260 RERSEIPIQAGENWW-FPRGFAEAIAAGASDFI------MPDLMKVGGITGWLNVAGQADAASIPMSS-HILP----EAS 327 (383)
T ss_dssp HHHCSSCEEECTTCC-HHHHHHHHHHHTCCSEE------CCCTTTTTHHHHHHHHHHHHHHHTCCBCC-CSCH----HHH
T ss_pred HhhcCCCEEeCCCcC-CHHHHHHHHHcCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEEee-cCHH----HHH
Confidence 9999 9999999864 59999999999999999 99999999999999999999999999754 5443 356
Q ss_pred HHhHhhcC
Q 011677 429 ADLSVGLA 436 (479)
Q Consensus 429 ~dlAv~~~ 436 (479)
+|++.++.
T Consensus 328 lhl~aa~p 335 (383)
T 3toy_A 328 AHVLPVTP 335 (383)
T ss_dssp HHHGGGCT
T ss_pred HHHHHhCC
Confidence 78877763
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-41 Score=343.39 Aligned_cols=295 Identities=18% Similarity=0.226 Sum_probs=224.1
Q ss_pred CceeeEEEEEEEec---------CCC-----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHH
Q 011677 44 PSVITKIKARQILD---------SRG-----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRA 109 (479)
Q Consensus 44 ~~~I~~I~~~~i~d---------s~g-----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~a 109 (479)
+|+|++|+.+.+.- +.+ .++++|+|+|++|+ +|+||+.++ + +.|.+++..++
T Consensus 3 ~MkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~----------~G~GE~~~~---~-~~~~~~~~~~~ 68 (371)
T 2ps2_A 3 DLKIARIDVFQVDLPYSGGVYYLSAGREYRSFDATIVRITTDTGI----------EGWGESTPF---G-SNYIASHPRGV 68 (371)
T ss_dssp CCCEEEEEEEEEEECBTTSCCCCC-------EEEEEEEEEETTSC----------EEEEEECCS---T-TTSSSCCHHHH
T ss_pred CCEEEEEEEEEEecccCCCCeeecccceeccCceEEEEEEECCCC----------EEEEEEecC---C-cccCCCCHHHH
Confidence 47999999998841 112 24689999999998 499998765 1 46888888888
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCccccc
Q 011677 110 VKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPV 189 (479)
Q Consensus 110 v~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pv 189 (479)
...+++ ++|.|+|+|+.+++++|+.|.+... + ..+|++|||+||||+.||..|+|||++||| ..+ -++
T Consensus 69 ~~~i~~-l~~~l~g~d~~~~~~~~~~l~~~~~----~--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~~~--~~v 136 (371)
T 2ps2_A 69 RAGIAT-MAPSLIGLDPRRVDRINDAMDDALL----G--HEDAKTAIDVACWDIFGKSVGLPVCELLGG---RTN--TRL 136 (371)
T ss_dssp HHHHHH-HHHHHTTSCTTCHHHHHHHHHHHCS----S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CCS--SCE
T ss_pred HHHHHH-HHHHHCCCCcccHHHHHHHHHHHhc----c--cHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---CCC--Cce
Confidence 888886 9999999999999999999976321 1 258999999999999999999999999998 323 356
Q ss_pred ceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHH
Q 011677 190 PAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLV 269 (479)
Q Consensus 190 p~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v 269 (479)
|+|++++++ +.++ ..+++.+...++|+.+| .|.| . +....++.|
T Consensus 137 p~~~~~~~~-------~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~---------~~~~~~e~v 180 (371)
T 2ps2_A 137 PLISSIYVG-------EPED---------MRARVAKYRAKGYKGQS----VKIS-------G---------EPVTDAKRI 180 (371)
T ss_dssp EBEEEECSC-------CHHH---------HHHHHHHHHTTTCCEEE----EECC-------S---------CHHHHHHHH
T ss_pred EEEEEeCCC-------CHHH---------HHHHHHHHHHhChheEE----eecC-------C---------CHHHHHHHH
Confidence 667766542 1121 23444444444554444 2322 1 123344444
Q ss_pred HHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHH-hhCCceeeecCCCccCHHHHH
Q 011677 270 KEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELC-ADYPIVSIEDPFDKEDWEHTK 347 (479)
Q Consensus 270 ~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll-~~~~i~~iEdP~~~~D~~g~~ 347 (479)
+...+.+|.+ ..+ +|++ +.||.+++++++.. + ++|++ |||||++ |+++|+
T Consensus 181 ~avr~a~g~~-~~l~vDan-----------------------~~~~~~~a~~~~~~-l~~~~~i-~iE~P~~--~~~~~~ 232 (371)
T 2ps2_A 181 TAALANQQPD-EFFIVDAN-----------------------GKLSVETALRLLRL-LPHGLDF-ALEAPCA--TWRECI 232 (371)
T ss_dssp HHHTTTCCTT-CEEEEECT-----------------------TBCCHHHHHHHHHH-SCTTCCC-EEECCBS--SHHHHH
T ss_pred HHHHHhcCCC-CEEEEECC-----------------------CCcCHHHHHHHHHH-HHhhcCC-cCcCCcC--CHHHHH
Confidence 3333335654 456 8883 35688999988655 6 99999 9999998 999999
Q ss_pred HHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh
Q 011677 348 SVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS 426 (479)
Q Consensus 348 ~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~ 426 (479)
+|++++ +||++||.. +++++++++++.+++|++ ++|++++||+|++++++++|+++|++++++|+. ||..+
T Consensus 233 ~l~~~~~iPI~~dE~~-~~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~-es~i~ 304 (371)
T 2ps2_A 233 SLRRKTDIPIIYDELA-TNEMSIVKILADDAAEGI------DLKISKAGGLTRGRRQRDICLAAGYSVSVQETC-GSDIA 304 (371)
T ss_dssp HHHTTCCSCEEESTTC-CSHHHHHHHHHHTCCSEE------EEEHHHHTSHHHHHHHHHHHHHHTCEEEEECSS-CCHHH
T ss_pred HHHhhCCCCEEeCCCc-CCHHHHHHHHHhCCCCEE------EechhhcCCHHHHHHHHHHHHHcCCeEEecCCC-cCHHH
Confidence 999999 999999976 569999999999999999 999999999999999999999999999988876 77655
Q ss_pred --HHHHhHhhcC
Q 011677 427 --FIADLSVGLA 436 (479)
Q Consensus 427 --~~~dlAv~~~ 436 (479)
+.+|||.++.
T Consensus 305 ~aa~~hlaa~~~ 316 (371)
T 2ps2_A 305 FAAIVHLAQTIP 316 (371)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHhCC
Confidence 4556665553
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=344.29 Aligned_cols=290 Identities=14% Similarity=0.139 Sum_probs=223.0
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. .+.+ .++++|+|+|+ |++ |+||+.. + ..++.
T Consensus 5 ~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td-G~~----------G~Ge~~~----------~---~~~~~ 60 (372)
T 3cyj_A 5 GPRVERLEVSAYTVPTDYPESDGTLQWDSTTMILVEAHGG-GRK----------GLGYTYG----------D---VSVGR 60 (372)
T ss_dssp -CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEET-TEE----------EEEEEES----------C---THHHH
T ss_pred CCEEeEEEEEEEeccCCCcccCcccccccccEEEEEEEeC-CcE----------EEEeccC----------c---HHHHH
Confidence 5799999988772 2222 35689999999 984 9999853 1 23455
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhh-hccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccc
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDL-DKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVP 190 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~-~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp 190 (479)
.+++.++|.|+|+|+.+++.+|+.|.+. +++++ ++++.+|++|||+||||+.||..|+|||++||| . +. ++|
T Consensus 61 ~i~~~l~~~l~g~d~~~~~~i~~~l~~~~~~~~~-~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg---~-~~--~vp 133 (372)
T 3cyj_A 61 FVESKLAGVAEGSDALSPPAVWARMQAAIRNAGR-PGVGAMAVSAVDIALWDLKARLLGLPLADALPR---F-HA--EVP 133 (372)
T ss_dssp HHHHHTHHHHTTSBTTCHHHHHHHHHHHTTTTCS-SBHHHHHHHHHHHHHHHHHHHHTTCBHHHHSCC---C-CS--SEE
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHhhhHcCCcHHHHhCC---C-CC--Cce
Confidence 6777899999999999999999998763 44433 557789999999999999999999999999998 2 23 455
Q ss_pred eEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 191 AFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 191 ~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
+|++ +|.+. .+.+ ..++++.+...++|+.+| .|.| . +.+.+.++++.||
T Consensus 134 ~~~~--~g~~~---~~~~---------~~~~~a~~~~~~G~~~~K----iKvG-------~------~~~~d~~~v~avr 182 (372)
T 3cyj_A 134 VYGS--GGFTS---YPLR---------RLQEQLGGWAAAGIPRVK----MKVG-------R------EPEKDPERVRAAR 182 (372)
T ss_dssp EEEE--CCCTT---SCHH---------HHHHHHHHHHHTTCCEEE----EECC-------S------SGGGHHHHHHHHH
T ss_pred EEEE--cCCCC---CCHH---------HHHHHHHHHHHcCCCEEE----EcCC-------C------CHHHHHHHHHHHH
Confidence 5664 23221 1112 234566666666776666 3433 1 2345677787777
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhC-CceeeecCCCccCHHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADY-PIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~-~i~~iEdP~~~~D~~g~~~ 348 (479)
+++ |.+ ..+ +|+| +.||.+++++++.+ +++| +|.|||||++++|+++|++
T Consensus 183 ~a~---g~~-~~l~vDaN-----------------------~~~~~~~a~~~~~~-l~~~~~i~~iEqP~~~~d~~~~~~ 234 (372)
T 3cyj_A 183 EAI---GES-VELMVDAN-----------------------GAYTRKQALYWAGA-FAREAGISYLEEPVSSEDREGLRL 234 (372)
T ss_dssp HHH---CTT-SEEEEECT-----------------------TCSCHHHHHHHHHH-HHHHHCCCEEECSSCTTCHHHHHH
T ss_pred HHh---CCC-CeEEEECC-----------------------CCCCHHHHHHHHHH-HHhhcCCcEEECCCCcccHHHHHH
Confidence 777 644 456 9984 35788999988755 8999 9999999999999999999
Q ss_pred HHhhh-h--hhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch
Q 011677 349 VLQIC-Q--QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED 425 (479)
Q Consensus 349 L~~~~-~--~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d 425 (479)
|++++ + ||++||+..+ .++++++ .+++|++ ++|++++||||++++++++|+++|++++++++ .
T Consensus 235 l~~~~~~~ipIa~dE~~~~-~~~~~~~--~~a~d~i------~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~-----~ 300 (372)
T 3cyj_A 235 LRDRGPGGVAIAAGEYEWT-LPQLHDL--AGCVDIL------QADVTRCGGITGLLRVDGICRGHQIPFSAHCA-----P 300 (372)
T ss_dssp HHHHSCTTCEEEECTTCCS-HHHHHHH--HTTCSEE------EECTTTTTHHHHHTTHHHHHHHHTCCEEECSC-----H
T ss_pred HHHhCCCCCCEECCCCccC-HHHHHHH--hCCCCEE------ecCchhhCCHHHHHHHHHHHHHcCCeecccch-----H
Confidence 99988 4 9999998765 8889998 8899999 99999999999999999999999999877654 3
Q ss_pred hHHHHhHhhcCC
Q 011677 426 SFIADLSVGLAS 437 (479)
Q Consensus 426 ~~~~dlAv~~~~ 437 (479)
...+|+|.++..
T Consensus 301 ~a~lhlaaa~~~ 312 (372)
T 3cyj_A 301 AVSAHACCAVES 312 (372)
T ss_dssp HHHHHHGGGCTT
T ss_pred HHHHHHHHhCCC
Confidence 456788777643
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=345.52 Aligned_cols=309 Identities=15% Similarity=0.117 Sum_probs=218.2
Q ss_pred CceeeEEEEEEEecC---CCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHH------
Q 011677 44 PSVITKIKARQILDS---RGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNIN------ 114 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds---~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~------ 114 (479)
||+|++|+++.+.-+ ..+.++.|+|+|++|++ |+||+... .......++
T Consensus 9 ~mkI~~i~~~~v~~p~~~~~~~~~~V~v~td~G~~----------G~GE~~~~------------~~~~~~~~~~~~~~~ 66 (394)
T 3mkc_A 9 VAPIKSIEFIPVNYQASNWSQNTVVVKVTDENGVY----------GLGEADGS------------PDAILAYANIETEHK 66 (394)
T ss_dssp CCCEEEEEEEEEEEC----CEEEEEEEEEETTSCE----------EEEEECSC------------HHHHHHHHTCCCCBT
T ss_pred CCeEEEEEEEEEecCCCCCCccEEEEEEEECCCCe----------EEEEecCc------------HHHHHHHHhcccchh
Confidence 789999999998422 23567999999999994 99997531 111122222
Q ss_pred --HHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 115 --ERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 115 --~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+.++|.|+|+||.+.+++|+.|.+.......++...+|++|||+||||+.||.+|+|||++||| ..+.++| .|
T Consensus 67 ~~~~l~p~liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~--~y 141 (394)
T 3mkc_A 67 WLTNITEKAIGRLPIEINAIWDAMYDATQWQGMRGLGMFALSGIDMALYDLAGKQLGVPAYQLLGG---TNKDKVH--PY 141 (394)
T ss_dssp TBCCTTTTTTTSCTTCHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CSCSEEC--CE
T ss_pred hHHHHHHHhCCCChhHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCC---CcCCeeE--EE
Confidence 2389999999999999999999763211111234578999999999999999999999999998 3344554 46
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHh-hhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE-KYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~-K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
..+++.. +...+.++. + ....+++.+...++|+++| . |.| .. ..+.+++.+.++.||+
T Consensus 142 ~s~~~~~--~~~~~~~~~-~----~~~~~~a~~~~~~G~~~~K----~~k~g-------~~---~~~~~~d~e~v~avR~ 200 (394)
T 3mkc_A 142 LTLYPAI--PVDASLDVA-I----KGYAPLLEKAKAHNIRAVK----VCVPI-------KA---DWSTKEVAYYLRELRG 200 (394)
T ss_dssp EECCCSC--C-CCCHHHH-H----HHHHHHHHHHHHTTCSEEE----EECCT-------TC---CCCHHHHHHHHHHHHH
T ss_pred EecCCcC--CCCcchhhh-H----HHHHHHHHHHHHcCCCEEE----eCccC-------CC---ccCHHHHHHHHHHHHH
Confidence 5432101 000000000 0 0111233333334454444 3 332 10 0122344566666666
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCC-CHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFK-SGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~-t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L 349 (479)
++ |.+ ..+ +|+| +.| |.++++++. +.++++++.|||||++++|++++++|
T Consensus 201 a~---G~d-~~l~vDaN-----------------------~~~~~~~~A~~~~-~~L~~~~i~~iEeP~~~~d~~~~~~l 252 (394)
T 3mkc_A 201 IL---GHD-TDMMVDYL-----------------------YRFTDWYEVARLL-NSIEDLELYFAEATLQHDDLSGHAKL 252 (394)
T ss_dssp HH---CSS-SEEEEECT-----------------------TCCCCHHHHHHHH-HHTGGGCCSEEESCSCTTCHHHHHHH
T ss_pred Hh---CCC-CeEEEeCC-----------------------CCCCCHHHHHHHH-HHhhhcCCeEEECCCCchhHHHHHHH
Confidence 65 644 355 8883 367 889999875 55899999999999999999999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--h
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--S 426 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~ 426 (479)
++++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|++++ .|+. ++.. +
T Consensus 253 ~~~~~iPIa~dE~~~-~~~~~~~~l~~~~~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~-~h~~-~s~i~~a 323 (394)
T 3mkc_A 253 VENTRSRICGAEMST-TRFEAEEWITKGKVHLL------QSDYNRCGGLTELRRITEMATANNVQVM-PHNW-KTGITSA 323 (394)
T ss_dssp HHHCSSCBEECTTCC-HHHHHHHHHHTTCCSEE------CCCTTTTTHHHHHHHHHHHHHHTTCEEC-CCCC-SCHHHHH
T ss_pred HhhCCCCEEeCCCCC-CHHHHHHHHHcCCCCeE------ecCccccCCHHHHHHHHHHHHHcCCEEe-ecCC-CcHHHHH
Confidence 9999 9999999865 59999999999999999 9999999999999999999999999986 5655 6655 4
Q ss_pred HHHHhHhhcCC
Q 011677 427 FIADLSVGLAS 437 (479)
Q Consensus 427 ~~~dlAv~~~~ 437 (479)
+.+||+.++..
T Consensus 324 a~~hlaaa~p~ 334 (394)
T 3mkc_A 324 AAIHYQFAVGN 334 (394)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHhCCC
Confidence 56777776643
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=341.53 Aligned_cols=293 Identities=17% Similarity=0.150 Sum_probs=228.1
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.+ ++++.|+|+|++| + |+||+...+. +.|.++++.++...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G-~----------G~GE~~~~~~---~~~~~e~~~~~~~~ 66 (368)
T 1sjd_A 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-E----------GWGECVTMAG---PLYSSEYNDGAEHV 66 (368)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-E----------EEEECCCBSS---SSSSSCBHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCeEeeeeEEecccEEEEEEEeCCC-E----------EEEEecCCCC---CccccCcHHHHHHH
Confidence 589999888763 2322 4579999999999 7 9999876532 46888999999988
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+++.++|.|+|+|+.+++++|+.|..+.+ +.+|++|||+||||+.||..|+|||++||| . +.++|++ |
T Consensus 67 i~~~l~~~l~g~d~~~~~~l~~~~~~~~g-------~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~-~~~~~~~-~ 134 (368)
T 1sjd_A 67 LRHYLIPALLAAEDITAAKVTPLLAKFKG-------HRMAKGALEMAVLDAELRAHERSFAAELGS---V-RDSVPCG-V 134 (368)
T ss_dssp HHHTHHHHHHHSSSCCHHHHHHHHTTSCS-------CHHHHHHHHHHHHHHHHHHTTCBHHHHHTC---C-CSEEEBE-E
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CCCccce-E
Confidence 99889999999999999999988754321 257999999999999999999999999998 3 3456665 4
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEA 272 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~a 272 (479)
++ |.+. +.++ ..+++.+...++|+.+| .| ++ + +.+.+.++.||++
T Consensus 135 ~~---g~~~----~~~~---------~~~~a~~~~~~Gf~~vK----ik-------~~------~--~~~~e~v~avr~~ 179 (368)
T 1sjd_A 135 SV---GIMD----TIPQ---------LLDVVGGYLDEGYVRIK----LK-------IE------P--GWDVEPVRAVRER 179 (368)
T ss_dssp EE---CCCS----CHHH---------HHHHHHHHHHHTCSEEE----EE-------CB------T--TBSHHHHHHHHHH
T ss_pred Ee---eCCC----CHHH---------HHHHHHHHHHhCccEEE----Ee-------cC------c--hhHHHHHHHHHHh
Confidence 42 2210 1121 23455555555565554 23 11 2 2357788888887
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+ |.+ ..+ +|+| +.||.++ ++++ +.+++|++.|||||++++|+++|++|++
T Consensus 180 ~---g~~-~~l~vDan-----------------------~~~~~~~-~~~~-~~l~~~~i~~iE~P~~~~~~~~~~~l~~ 230 (368)
T 1sjd_A 180 F---GDD-VLLQVDAN-----------------------TAYTLGD-APQL-ARLDPFGLLLIEQPLEEEDVLGHAELAR 230 (368)
T ss_dssp H---CTT-SEEEEECT-----------------------TCCCGGG-HHHH-HTTGGGCCSEEECCSCTTCHHHHHHHHT
T ss_pred c---CCC-ceEEEecc-----------------------CCCCHHH-HHHH-HHHHhcCCCeEeCCCChhhHHHHHHHHH
Confidence 7 644 345 8883 2567778 8775 5589999999999999999999999999
Q ss_pred hh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HH
Q 011677 352 IC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FI 428 (479)
Q Consensus 352 ~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~ 428 (479)
++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|+++|++|+. |+..+ +.
T Consensus 231 ~~~ipIa~dE~~-~~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~-es~i~~aa~ 302 (368)
T 1sjd_A 231 RIQTPICLDESI-VSARAAADAIKLGAVQIV------NIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMI-ETGLGRAAN 302 (368)
T ss_dssp TCSSCEEESTTC-CSHHHHHHHHHTTCCSEE------EECTTTTTSHHHHHHHHHHHHHTTCCEEECCCC-CCHHHHHHH
T ss_pred hCCCCEEECCCc-CCHHHHHHHHHcCCCCEE------EecccccCCHHHHHHHHHHHHHcCCcEEeCCcc-ccHHHHHHH
Confidence 99 999999985 669999999999999999 999999999999999999999999999999986 66554 45
Q ss_pred HHhHhhcC
Q 011677 429 ADLSVGLA 436 (479)
Q Consensus 429 ~dlAv~~~ 436 (479)
+||| ++.
T Consensus 303 ~hla-a~~ 309 (368)
T 1sjd_A 303 VALA-SLP 309 (368)
T ss_dssp HHHH-TST
T ss_pred HHHH-cCC
Confidence 6776 543
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=344.11 Aligned_cols=299 Identities=15% Similarity=0.121 Sum_probs=224.7
Q ss_pred ceeeEEEEEEEec--------CC----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQILD--------SR----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~d--------s~----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+++.+.- |. ....+.|+|+ ++|+ +|+||+..+.. +.|.+++...+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~----------~G~GE~~~~~~---~~~~~e~~~~~~~~ 66 (370)
T 1chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGL----------VGVGEGGSVGG---PVWSAECAETIKII 66 (370)
T ss_dssp CCCCCCCEECCCCCCCCCCTTCCSSCCCCCCEECCBC-SSSC----------BCCEECCCBTT---BTTSSCCHHHHHHH
T ss_pred CEEEEEEEEEEEccCCCCeEccceEEeeeeEEEEEEE-ECCc----------EEEEccccCCC---CCCCCCCHHHHHHH
Confidence 6899999988831 22 2456999999 9998 59999876532 35888888888888
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
|++.++|.|+|+||.+.+++|+.|.+... +. ..|++|||+||||+.||..|+|||++||| ..+.++|+ +
T Consensus 67 i~~~l~p~l~G~d~~~~~~~~~~l~~~~~----g~--~~A~said~ALwDl~gK~~g~Pl~~LLGg---~~r~~v~~--~ 135 (370)
T 1chr_A 67 VERYLAPHLLGTDAFNVSGALQTMARAVT----GN--ASAKAAVEMALLDLKARALGVSIAELLGG---PLRSAIPI--A 135 (370)
T ss_dssp HHHHTHHHHTTSCTTCHHHHHHHHHHHCS----SC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSCSEEEB--E
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHhc----Cc--HHHHHHHHHHHHHHHHHHcCCCHHHHhCC---CCCCceeE--E
Confidence 98889999999999999999999976321 11 57999999999999999999999999998 33456665 4
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHH-HHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGS-ETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~-e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
..++.|. . ...++++.+... ++|+.+| .|.| . .+.+.+.+.++.||+
T Consensus 136 ~t~~~~~-------~---------~~~~~~~~~~~~~~G~~~~K----iKvg-------~-----~~~~~d~~~v~avR~ 183 (370)
T 1chr_A 136 WTLASGD-------T---------KRDLDSAVEMIERRRHNRFK----VKLG-------F-----RSPQDDLIHMEALSN 183 (370)
T ss_dssp EEECSSS-------H---------HHHHHHHHHHHHTTCCCEEE----EECS-------S-----SCSHHHHHHHHHHHH
T ss_pred EEecCCC-------c---------HHHHHHHHHHHHHCCCCEEE----EecC-------C-----CCHHHHHHHHHHHHH
Confidence 3332220 0 112334433333 3444443 3433 1 122344555555555
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
++ |.+ ..+ +|+| +.||.++++++. +.+++|++.|||||++++|++++++|+
T Consensus 184 ~~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l~ 235 (370)
T 1chr_A 184 SL---GSK-AYLRVDVN-----------------------QAWDEQVASVYI-PELEALGVELIEQPVGRENTQALRRLS 235 (370)
T ss_dssp HS---STT-CCEEEECT-----------------------TCCCTTHHHHHT-HHHHTTTEEEEECCSCTTCHHHHHHHH
T ss_pred hc---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCCcccHHHHHHHH
Confidence 54 644 356 8983 356778888765 558999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--H
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--F 427 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~ 427 (479)
+++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|+ .|+..+ +
T Consensus 236 ~~~~iPia~dE~~-~~~~~~~~~~~~~~~d~v------~~k~~~~GGit~~~~i~~~A~~~g~~~~~~~~-~es~i~~aa 307 (370)
T 1chr_A 236 DNNRVAIMADESL-STLASAFDLARDRSVDVF------SLKLCNMGGVSATQKIAAVAEASGIASYGGTM-LDSTIGTSV 307 (370)
T ss_dssp HHSCSEEEESSSC-CSHHHHHHHHTTTSCSEE------EECTTTSCSHHHHHHHHHHHHHHTCEEEECCS-CCTTHHHHH
T ss_pred hhCCCCEEeCCCc-CCHHHHHHHHHcCCCCEE------EECccccCCHHHHHHHHHHHHHcCCeEEecCC-CccHHHHHH
Confidence 999 999999986 459999999999999999 99999999999999999999999999877665 455444 5
Q ss_pred HHHhHhhcC
Q 011677 428 IADLSVGLA 436 (479)
Q Consensus 428 ~~dlAv~~~ 436 (479)
.+||+.++.
T Consensus 308 ~~hlaaa~~ 316 (370)
T 1chr_A 308 ALQLYSTVP 316 (370)
T ss_dssp HHHHHTTSS
T ss_pred HHHHHHhCC
Confidence 566666553
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=347.93 Aligned_cols=298 Identities=12% Similarity=0.092 Sum_probs=222.6
Q ss_pred CceeeEEEEEEEe--------cCCC----Cc-eEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IP-TVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAV 110 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~-~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av 110 (479)
||+|++|+++.+. ++.| .. .+.|+|+|++|++ |+||+.++. .|. ++...+.
T Consensus 5 ~~kI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~-----~~~-e~~~~~~ 68 (377)
T 3my9_A 5 DSVVERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIV----------GWGEAAPWE-----VFT-GTPEAAF 68 (377)
T ss_dssp CCBEEEEEEEEEEECEEC----------CCEEEEEEEEEETTSCE----------EEEEECCC-----------CHHHHH
T ss_pred cCEEEEEEEEEEeccccCCeeccceEEEeeeeEEEEEEEECCCCE----------EEEecccCC-----CcC-CCHHHHH
Confidence 8999999999883 2222 35 7999999999994 999987642 233 5677777
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccc
Q 011677 111 KNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVP 190 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp 190 (479)
..|++.++|.|+|+||.+.+++|+.|.+... + ..+|++|||+||||+.||..|+|||++||| ..+.++|+
T Consensus 69 ~~i~~~l~p~liG~d~~~~~~~~~~l~~~~~----~--~~~A~said~AlwDl~gk~~g~Pl~~LLGg---~~r~~v~~- 138 (377)
T 3my9_A 69 SALDIYLRPLILGAPIKRVRELMARMDKMLV----G--HGEAKAAVEMALLDILGKATGLSVADLLGG---RVRDRIPL- 138 (377)
T ss_dssp HHHHTTTHHHHTTCBTTCHHHHHHHHHHHSC----S--CHHHHHHHHHHHHHHHHHHHTCBTTGGGTC---CSCSEEEB-
T ss_pred HHHHHHHHHHhCCCCcCCHHHHHHHHHHHhc----C--chhHHHHHHHHHHHHHHHHcCCcHHHHhCC---CCCCeEEE-
Confidence 7787779999999999999999999976321 1 157999999999999999999999999998 33455555
Q ss_pred eEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 191 AFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 191 ~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
+..++.+ +. ....+++.+...++|+.+| .|.|. .+.+.+.+.++.||
T Consensus 139 -~~t~~~~-------~~---------~~~~~~a~~~~~~G~~~~K----~Kvg~------------~~~~~d~~~v~avR 185 (377)
T 3my9_A 139 -SFSIADP-------DF---------DADLERMRAMVPAGHTVFK----MKTGV------------KPHAEELRILETMR 185 (377)
T ss_dssp -CEEECCS-------SH---------HHHHHHHHHHTTTTCCEEE----EECSS------------SCHHHHHHHHHHHH
T ss_pred -EEecCCC-------CH---------HHHHHHHHHHHHcCCCEEE----EccCC------------CcHHHHHHHHHHHH
Confidence 4333211 11 1123344444444565554 44331 12334566777777
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L 349 (479)
+++ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|
T Consensus 186 ~~~---g~~-~~l~vDan-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l 237 (377)
T 3my9_A 186 GEF---GER-IDLRLDFN-----------------------QALTPFGAMKIL-RDVDAFRPTFIEQPVPRRHLDAMAGF 237 (377)
T ss_dssp HHH---GGG-SEEEEECT-----------------------TCCCTTTHHHHH-HHHHTTCCSCEECCSCTTCHHHHHHH
T ss_pred HHh---CCC-CeEEEeCC-----------------------CCcCHHHHHHHH-HHHhhcCCCEEECCCCccCHHHHHHH
Confidence 776 433 345 8883 356777888765 55899999999999999999999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--h
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--S 426 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~ 426 (479)
++++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|+ .|+.. +
T Consensus 238 ~~~~~ipIa~dE~~-~~~~~~~~~i~~~~~d~v------~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~-~es~i~~a 309 (377)
T 3my9_A 238 AAALDTPILADESC-FDAVDLMEVVRRQAADAI------SVKIMKCGGLMKAQSLMAIADTAGLPGYGGTL-WEGGIALA 309 (377)
T ss_dssp HHHCSSCEEESTTC-SSHHHHHHHHHHTCCSEE------ECCHHHHTSHHHHHHHHHHHHHHTCCEECCEE-CCSHHHHH
T ss_pred HHhCCCCEEECCcc-CCHHHHHHHHHcCCCCEE------EecccccCCHHHHHHHHHHHHHcCCeEecCCC-CCcHHHHH
Confidence 9999 999999976 459999999999999999 99999999999999999999999999977665 45544 4
Q ss_pred HHHHhHhhcC
Q 011677 427 FIADLSVGLA 436 (479)
Q Consensus 427 ~~~dlAv~~~ 436 (479)
+.+||+.++.
T Consensus 310 a~~hlaaa~~ 319 (377)
T 3my9_A 310 AGTQLIAATP 319 (377)
T ss_dssp HHHHHHHTCT
T ss_pred HHHHHHHhCC
Confidence 5566666653
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-41 Score=343.15 Aligned_cols=295 Identities=20% Similarity=0.245 Sum_probs=223.4
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. .+.| +..+.|+|+|++|++ |+||+.++ +.|.+++...+..
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~ 68 (365)
T 3ik4_A 4 PTTIQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTL----------GLGEAAPF-----PAVSGETQTGTSA 68 (365)
T ss_dssp TTBEEEEEEEEEEEEBSCC--------CEEEEEEEEEEETTSCE----------EEEEECCC-----CTTTCCCHHHHHH
T ss_pred CCEEEEEEEEEEEEecCCCeEccCeEEEeeeEEEEEEEECCCCE----------EEEecccC-----CCcCcCCHHHHHH
Confidence 5799999998883 2222 357899999999984 99998765 4577888888877
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.+ +.++|.|+|+|+.+.+++|+.|.+... . ..+|++|||+||||+.||..|+|||++||| . +.++|+
T Consensus 69 ~l-~~l~~~l~G~d~~~~~~~~~~l~~~~~----~--~~~a~said~ALwDl~gk~~g~Pl~~LLGg---~-~~~v~~-- 135 (365)
T 3ik4_A 69 AI-ERLQSHLLGADVRGWRKLAAMLDHAEH----E--AAAARCGLEMAMLDALTRHYHMPLHVFFGG---V-SKQLET-- 135 (365)
T ss_dssp HH-HHHGGGTTTCBGGGHHHHHHHHHHHCT----T--CHHHHHHHHHHHHHHHHHHTTCBHHHHTTC---S-CSEEEB--
T ss_pred HH-HHHHHHHcCCCccCHHHHHHHHHHHhc----c--cHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CCceee--
Confidence 77 479999999999999999999976321 1 257999999999999999999999999998 3 244444
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
+..++.+ + .+...+++.+...++|+.+| .|.|. .+.+.+.+.++.||+
T Consensus 136 ~~~~~~~-------~---------~e~~~~~a~~~~~~G~~~iK----~Kvg~------------~~~~~d~~~v~avr~ 183 (365)
T 3ik4_A 136 DMTITAG-------D---------EVHAAASAKAILARGIKSIK----VKTAG------------VDVAYDLARLRAIHQ 183 (365)
T ss_dssp CEEECCS-------C---------HHHHHHHHHHHHHTTCCCEE----EECCS------------SCHHHHHHHHHHHHH
T ss_pred eEEecCC-------C---------HHHHHHHHHHHHHcCCCEEE----EEeCC------------CCHHHHHHHHHHHHH
Confidence 4333211 1 11223344444445565554 45331 112344555666655
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHH--hhCCceeeecCCCccCHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELC--ADYPIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll--~~~~i~~iEdP~~~~D~~g~~~ 348 (479)
++ + + ..+ +|+| +.||.++++++. +.+ ++|+|.|||||++++|++++++
T Consensus 184 ~~---~-~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~~~i~~iEeP~~~~d~~~~~~ 234 (365)
T 3ik4_A 184 AA---P-T-APLIVDGN-----------------------CGYDVERALAFC-AACKAESIPMVLFEQPLPREDWAGMAQ 234 (365)
T ss_dssp HS---S-S-CCEEEECT-----------------------TCCCHHHHHHHH-HHHHHTTCCEEEEECCSCTTCHHHHHH
T ss_pred hC---C-C-CeEEEECC-----------------------CCCCHHHHHHHH-HHHhhCCCCceEEECCCCcccHHHHHH
Confidence 54 3 2 356 9984 367889999875 457 8899999999999999999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED-- 425 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d-- 425 (479)
|++++ +||++||+. +++++++++++.+++|++ |+|+++ ||||++++++++|+++|++++++++ .|+..
T Consensus 235 l~~~~~ipIa~dE~~-~~~~~~~~~i~~~a~d~v------~ik~~~-GGit~~~~i~~~A~~~gi~~~~~~~-~es~ig~ 305 (365)
T 3ik4_A 235 VTAQSGFAVAADESA-RSAHDVLRIAREGTASVI------NIKLMK-AGVAEGLKMIAIAQAAGLGLMIGGM-VESILAM 305 (365)
T ss_dssp HHHHSSSCEEESTTC-SSHHHHHHHHHHTCCSEE------EECHHH-HCHHHHHHHHHHHHHHTCEEEECCS-SCCHHHH
T ss_pred HHhhCCCCEEECCCC-CCHHHHHHHHHhCCCCEE------EEcCCc-cCHHHHHHHHHHHHHcCCeEEecCC-cccHHHH
Confidence 99999 999999985 569999999999999999 999999 9999999999999999999977654 46644
Q ss_pred hHHHHhHhhcC
Q 011677 426 SFIADLSVGLA 436 (479)
Q Consensus 426 ~~~~dlAv~~~ 436 (479)
++.+|||.++.
T Consensus 306 aa~~hlaaa~p 316 (365)
T 3ik4_A 306 SFSANLAAGNG 316 (365)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 56677777654
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=345.41 Aligned_cols=310 Identities=15% Similarity=0.183 Sum_probs=222.7
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
+|+|++|+...+ ..+++.+.|+|+|++|++ |+||+.. .+++ ..+...|++.++|.|+|
T Consensus 22 ~mkIt~v~~~~~--~~~~~~v~V~v~td~Gi~----------G~GE~~~---------~g~~-~~~~~~l~~~l~p~LiG 79 (426)
T 4e4f_A 22 SMKIVSAEVFVT--CPGRNFVTLKITTDSGLT----------GLGDATL---------NGRE-LPVASYLNDHVCPQLIG 79 (426)
T ss_dssp CCBEEEEEEEEE--CSSSCEEEEEEEETTSCE----------EEEECCC---------TTCH-HHHHHHHHHTHHHHHTT
T ss_pred CcEEEEEEEEEE--cCCCCEEEEEEEECCCCE----------EEEeccc---------CCCc-HHHHHHHHHHHHHHHcC
Confidence 689999999866 235678999999999994 9999753 2222 23455677889999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+||.+.+++|+.|++.. ....+.+..+|++|||+||||+.||.+|+|||+|||| ..+.++|+ |....|.
T Consensus 80 ~dp~~ie~i~~~l~~~~-~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~~--y~~~~~~----- 148 (426)
T 4e4f_A 80 RDAHQIEDIWQYFYKGA-YWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGG---ASRTGVMV--YCHTTGH----- 148 (426)
T ss_dssp SBTTCHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTC---CSSSSEEE--EEEECCS-----
T ss_pred CChhhHHHHHHHHHhhc-cccCCccchhhHHHHHHHHHHHhHhHcCCcHHHHcCC---CCCCceeE--eEeCCCC-----
Confidence 99999999999998632 1223445578999999999999999999999999998 33445555 5432221
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcc--c----CCCCCCCCCC----------------Cc
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCN--V----GEDGGLAPNI----------------SS 261 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~--v----g~~G~~~~~~----------------~~ 261 (479)
+.. ...+++.+...++|+++| .|.|..... . +..-.+.+.. +.
T Consensus 149 --~~~---------~~~~~~~~~~~~Gf~~iK----ikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (426)
T 4e4f_A 149 --SID---------EVLDDYAKHRDQGFKAIR----VQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDF 213 (426)
T ss_dssp --SHH---------HHHHHHHHHHHTTCSEEE----ECC-------------------CCSEESSSCCEEEECHHHHHHH
T ss_pred --CHH---------HHHHHHHHHHHcCCCEEE----EeccCCccccccccccccccccccccccccccccccchhHHHHH
Confidence 111 123344444455666655 454421100 0 0000011100 00
Q ss_pred hHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCc
Q 011677 262 IREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDK 340 (479)
Q Consensus 262 ~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~ 340 (479)
+.+.++.||+++ |.+ ..+ +|+| +.||.++++++. +.+++|++.|||||+++
T Consensus 214 ~~e~v~avR~a~---G~d-~~L~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEeP~~~ 265 (426)
T 4e4f_A 214 TPKLFEAVRDKF---GFN-EHLLHDMH-----------------------HRLTPIEAARFG-KSVEDYRLFWMEDPTPA 265 (426)
T ss_dssp HHHHHHHHHHHH---TTS-SEEEEECT-----------------------TCSCHHHHHHHH-HHTGGGCCSEEECCSCC
T ss_pred HHHHHHHHHHHh---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHhhcCCCEEECCCCh
Confidence 134566666666 644 455 8883 367899999875 55899999999999999
Q ss_pred cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 341 EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 341 ~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
+|++++++|++++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|+++ ++|.
T Consensus 266 ~d~~~~~~l~~~~~iPIa~dE~~~-~~~~~~~~i~~ga~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~v-~~h~ 337 (426)
T 4e4f_A 266 ENQACFRLIRQHTVTPIAVGEVFN-SIWDCKQLIEEQLIDYI------RTTITHAGGITGMRRIADFASLYQVRT-GSHG 337 (426)
T ss_dssp SSGGGGHHHHTTCCSCEEECTTCC-SGGGTHHHHHTTCCSEE------CCCTTTTTHHHHHHHHHHHHHTTTCEE-EECC
T ss_pred HHHHHHHHHHhcCCCCEEeCCCcC-CHHHHHHHHHcCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEE-eeeC
Confidence 9999999999999 9999999865 59999999999999999 999999999999999999999999996 5575
Q ss_pred C-CCCch--hHHHHhHhhcCC
Q 011677 420 S-GETED--SFIADLSVGLAS 437 (479)
Q Consensus 420 ~-get~d--~~~~dlAv~~~~ 437 (479)
+ .++.. ++.+|||.++.+
T Consensus 338 ~~~~s~i~~aa~~hlaaa~pn 358 (426)
T 4e4f_A 338 PSDLSPICMAAALHFDLWVPN 358 (426)
T ss_dssp CTTSCHHHHHHHHHHHHHCTT
T ss_pred CCCccHHHHHHHHHHHHhCCC
Confidence 3 35533 566777776643
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-40 Score=339.80 Aligned_cols=312 Identities=17% Similarity=0.175 Sum_probs=231.6
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. .+.| +..+.|+|+| +|++ |+||+.++.. +.|.+++...+..
T Consensus 6 ~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~lV~v~t-~G~~----------G~GE~~~~~~---p~~~~et~~~~~~ 71 (400)
T 3mwc_A 6 SARIDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIRE-GDLF----------GYGESAPFEE---PFYLGETLETTKV 71 (400)
T ss_dssp CCCCCEEEEEEEEEECSSCCCBTTBCCCEEEEEEEEEEE-TTEE----------EEEEECCBSS---TTSTTCBHHHHHH
T ss_pred CcEEEEEEEEEEeccccCceEccCceEeeeeEEEEEEEE-CCeE----------EEEecccCCC---CccccCcHHHHHH
Confidence 5799999999883 2222 3579999999 9984 9999877532 4688899998888
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcc---cC------C
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL---AG------K 182 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~---~~------~ 182 (479)
.|++.++|.|+|+||.+.+++|+.|.... .+. ..|++|||+||||+.||..|+|||++|||. .+ .
T Consensus 72 ~i~~~l~p~liG~d~~~~e~~~~~l~~~~----~g~--~~A~said~ALwDl~gk~~g~Pl~~LLGG~~~~~~~~~~~~~ 145 (400)
T 3mwc_A 72 ILKNHLLPMILGKEPLSIEEFNHLIKNGI----RGN--HFARCGVENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLA 145 (400)
T ss_dssp HHHHTHHHHHTTCCCSSHHHHHHHHHHSC----CSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHTTCCGGGGC
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHh----cCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCccccccccccccc
Confidence 89888999999999999999999998621 121 359999999999999999999999999950 00 0
Q ss_pred CCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCch
Q 011677 183 TNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSI 262 (479)
Q Consensus 183 ~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~ 262 (479)
.+.++|+ +..+ |... ..+ .+...+++.+...++|+.+| .|.| + +.+
T Consensus 146 ~r~~v~~--~~s~--g~~~--~~~---------~e~~~~~a~~~~~~G~~~iK----lKv~-------------~--~~d 191 (400)
T 3mwc_A 146 SNNYIES--GAAL--GIPE--DGR---------IETLIHQVEESLQEGYRRIK----IKIK-------------P--GWD 191 (400)
T ss_dssp BCSEEEB--CEEE--CCCT--TCC---------HHHHHHHHHHHHHHTCSCEE----EECB-------------T--TBS
T ss_pred CCCeEEe--eEEe--ccCC--CCC---------HHHHHHHHHHHHHcCCCEEE----EEeC-------------c--chH
Confidence 1345554 4432 2100 000 11223344444445565554 3421 2 245
Q ss_pred HHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCcc
Q 011677 263 REGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKE 341 (479)
Q Consensus 263 ~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~ 341 (479)
.+.++.||+++ |.+ ..+ +|+| +.||.++ +++. +.+++|++.|||||++++
T Consensus 192 ~~~v~avR~a~---G~~-~~L~vDaN-----------------------~~w~~~~-~~~~-~~l~~~~i~~iEqP~~~~ 242 (400)
T 3mwc_A 192 VEPLQETRRAV---GDH-FPLWTDAN-----------------------SSFELDQ-WETF-KAMDAAKCLFHEQPLHYE 242 (400)
T ss_dssp HHHHHHHHHHH---CTT-SCEEEECT-----------------------TCCCGGG-HHHH-HHHGGGCCSCEESCSCTT
T ss_pred HHHHHHHHHhc---CCC-CEEEEeCC-----------------------CCCCHHH-HHHH-HHHHhcCCCEEeCCCChh
Confidence 77888888877 544 456 9983 3567777 7665 568999999999999999
Q ss_pred CHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCC
Q 011677 342 DWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRS 420 (479)
Q Consensus 342 D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ 420 (479)
|++++++|++++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|++++++++
T Consensus 243 d~~~~~~l~~~~~iPIa~dE~~~-~~~~~~~~~~~~~~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~- 314 (400)
T 3mwc_A 243 ALLDLKELGERIETPICLDESLI-SSRVAEFVAKLGISNIW------NIKIQRVGGLLEAIKIYKIATDNGIKLWGGTM- 314 (400)
T ss_dssp CHHHHHHHHHHSSSCEEESTTCC-SHHHHHHHHHTTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEECCS-
T ss_pred hHHHHHHHHhhCCCCEEEeCCcC-CHHHHHHHHhcCCCCEE------EEcchhhCCHHHHHHHHHHHHHcCCEEEecCC-
Confidence 999999999999 9999999865 59999999999999999 99999999999999999999999999877654
Q ss_pred CCCchhHHHHhHhhcCCCCcccCCCC
Q 011677 421 GETEDSFIADLSVGLASGQIKAGAPC 446 (479)
Q Consensus 421 get~d~~~~dlAv~~~~~~ik~G~~~ 446 (479)
.|+..+..+.++++....+..++...
T Consensus 315 ~es~i~~aa~~hlaa~~~~~~~~d~~ 340 (400)
T 3mwc_A 315 PESGLGARFLISLASFRGFVFPADVA 340 (400)
T ss_dssp CCCHHHHHHHHHHTTBTTBCSCBCCC
T ss_pred CCCHHHHHHHHHHHcCCCCcceeccC
Confidence 57766555555554434444444443
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-41 Score=345.32 Aligned_cols=296 Identities=18% Similarity=0.244 Sum_probs=227.5
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. ++.| +..+.|+|+|++|++ |+||+.++ +.|.+++...+..
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~ 68 (389)
T 3s5s_A 4 PTLIRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTL----------GFGEAAPL-----PAFNGETQDGSRA 68 (389)
T ss_dssp TTBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECCC-----HHHHSCCHHHHHH
T ss_pred CCEEEEEEEEEEEEecCCceeccCceEEeeeEEEEEEEECCCCE----------EEEeccCC-----CCcCccCHHHHHH
Confidence 5799999998873 3333 357899999999984 99998765 3466777777777
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.++ .++|.|+|+||.+.+++|+.|.+... .+ +.+|++|||+||||+.||..|+|||++||| . ..++|+
T Consensus 69 ~l~-~l~~~l~G~d~~~~~~~~~~l~~~~~-~~----~~~A~said~ALwDl~gk~~g~Pl~~LLGg---~-~~~v~~-- 136 (389)
T 3s5s_A 69 AAV-SLREAVVGSDARAWRAVARALREASG-GG----AGAARCAIETAILDALTKRAGMPLWAFFGG---S-GTALTT-- 136 (389)
T ss_dssp HHH-HTHHHHTTSBGGGHHHHHHHHHHHHT-TC----CHHHHHHHHHHHHHHHHHTTTCBHHHHTTC---S-CSEEEC--
T ss_pred HHH-HHHHHhcCCCccCHHHHHHHHHHhhc-cC----hHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CCceEE--
Confidence 774 69999999999999999999976321 11 137999999999999999999999999998 3 244554
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
+..++.+ ..+...+++.+...++|+.+| .|.|. .+.+++.++++.||+
T Consensus 137 ~~t~~~~----------------~~e~~~~~a~~~~~~G~~~iK----lKvg~------------~~~~~d~~~v~avR~ 184 (389)
T 3s5s_A 137 DITITTG----------------SPERAEEAARRAAAMGFRALK----VKVGG------------RLAASDPARIEAIHA 184 (389)
T ss_dssp CEEECSS----------------CSHHHHHHHHHHHHHTCCEEE----EECCG------------GGTTTHHHHHHHHHH
T ss_pred EeeecCC----------------CHHHHHHHHHHHHHcCCCeEE----EEecC------------CChHHHHHHHHHHHH
Confidence 3333211 112234455555556676665 45431 113456777777777
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHH--hhCCceeeecCCCccCHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELC--ADYPIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll--~~~~i~~iEdP~~~~D~~g~~~ 348 (479)
++ | + .++ +|+| +.||.++++++.. .+ ++|+|.|||||++++|++++++
T Consensus 185 ~~---~-~-~~L~vDaN-----------------------~~w~~~~A~~~~~-~L~~~~~~i~~iEeP~~~~d~~~~~~ 235 (389)
T 3s5s_A 185 AA---P-G-ASLILDGN-----------------------GGLTAGEALALVA-HARRLGADVALLEQPVPRDDWDGMKE 235 (389)
T ss_dssp HC---T-T-CEEEEECT-----------------------TCSCHHHHHHHHH-HHHHTTCEEEEEECCSCTTCHHHHHH
T ss_pred hC---C-C-CeEEEECC-----------------------CCCCHHHHHHHHH-HHhhCCCCeEEEECCCCcccHHHHHH
Confidence 66 3 2 356 9984 3678999998754 57 8899999999999999999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCc--h
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETE--D 425 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~--d 425 (479)
|++++ +||++||+.. ++++++++++.+++|++ ++|+++ ||||++++++++|+++|++++++++ .|+. .
T Consensus 236 l~~~~~iPIa~dEs~~-~~~~~~~~i~~~a~d~v------~~k~~~-GGit~~~~i~~~A~~~gi~~~~~~~-~es~ig~ 306 (389)
T 3s5s_A 236 VTRRAGVDVAADESAA-SAEDVLRVAAERAATVV------NIKLMK-GGIAEALDIAAVARAAGLGLMIGGM-VESVLAM 306 (389)
T ss_dssp HHHHSSSCEEESTTCS-SHHHHHHHHHTTCCSEE------EECHHH-HHHHHHHHHHHHHHHTTCEEEECCS-SCCHHHH
T ss_pred HHhhCCCCEEECCCCC-CHHHHHHHHHcCCCCEE------EecCCC-CCHHHHHHHHHHHHHcCCeEEecCC-cccHHHH
Confidence 99999 9999999864 59999999999999999 999999 9999999999999999999987655 4654 4
Q ss_pred hHHHHhHhhcC
Q 011677 426 SFIADLSVGLA 436 (479)
Q Consensus 426 ~~~~dlAv~~~ 436 (479)
++.+|||.++.
T Consensus 307 aa~~hlaaa~p 317 (389)
T 3s5s_A 307 TASACFAAGLG 317 (389)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhhCC
Confidence 56777777654
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=344.04 Aligned_cols=298 Identities=15% Similarity=0.084 Sum_probs=221.1
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. ++.+ .+.+.|+|+|++|+ +|+||+..+ .+ +...++.
T Consensus 27 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~----------~G~GE~~~~--------~~-~~~~~~~ 87 (390)
T 3ugv_A 27 TLTFRKLTARPVLLKLQRPVTARIATIPDWPLILIDIETEEGV----------PGRAYLEPY--------VP-KAMKYLV 87 (390)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSC----------CEEEEECCS--------CG-GGHHHHH
T ss_pred CCEEEEEEEEEEEecCCCCccCcccccccceEEEEEEEECCCC----------EEEEEeecC--------CC-chHHHHH
Confidence 4799999999873 3333 35799999999998 599998653 11 2234555
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.+.+.++|.|+|+|+.+. ++|+.|.+.......+++..+|++|||+||||+.||..|+|||++||| . +.+ +|+
T Consensus 88 ~~~~~l~p~liG~d~~~~-~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg---~-~~~--v~~ 160 (390)
T 3ugv_A 88 PALHDMSDMLAGQPLAPA-EIYDKTRKSLHFVGYAGLSMIAASGVDMAVWDALARAANMPLCTLLGG---T-PGS--VKA 160 (390)
T ss_dssp HHHHHHHHHHTTSBCCHH-HHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTC---C-CCE--EEE
T ss_pred HHHHHHHHHHCCCCcchH-HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHhCC---C-CCc--eEE
Confidence 677889999999999999 999999763211112335578999999999999999999999999998 2 234 555
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHH---HHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSE---TYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDL 268 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e---~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~ 268 (479)
|..++ ++.. .+ .+...+++.+...+ +|+.+| .|.|. ++.+.+.+.++.
T Consensus 161 y~s~g-~~~~---~~---------~e~~~~~a~~~~~~~~~G~~~iK----lKvG~------------~~~~~d~~~v~a 211 (390)
T 3ugv_A 161 YNSNG-LWLK---SP---------AEVAAEAVELKAEGQGTGFKGLK----LRMGR------------DDPAVDIETAEA 211 (390)
T ss_dssp EECSC-CCSS---CH---------HHHHHHHHHHHHTTCTTCCSEEE----EECCC------------SSHHHHHHHHHH
T ss_pred EEecc-cccC---CC---------HHHHHHHHHHHHHhhhCCCcEEE----EecCC------------CCHHHHHHHHHH
Confidence 66543 2110 01 11223344444444 565554 45331 123345666666
Q ss_pred HHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHH
Q 011677 269 VKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK 347 (479)
Q Consensus 269 v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~ 347 (479)
||+++ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|+++++
T Consensus 212 vR~a~---G~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEqP~~~~d~~~~~ 263 (390)
T 3ugv_A 212 VWDAV---GRD-TALMVDFN-----------------------QGLDMAEAMHRT-RQIDDLGLEWIEEPVVYDNFDGYA 263 (390)
T ss_dssp HHHHH---CTT-SEEEEECT-----------------------TCCCHHHHHHHH-HHHTTSCCSEEECCSCTTCHHHHH
T ss_pred HHHHh---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHHhhCCCEEECCCCcccHHHHH
Confidence 66666 644 456 8883 367889999875 558999999999999999999999
Q ss_pred HHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh
Q 011677 348 SVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS 426 (479)
Q Consensus 348 ~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~ 426 (479)
+|++++ +||++||+. .++++++++++.+++|++ ++|++++||||++++++++|+++|+++++ |+.. .
T Consensus 264 ~l~~~~~iPIa~dE~~-~~~~~~~~~i~~~a~d~v------~ik~~~~GGit~~~~i~~~A~~~gi~~~~-h~~~----~ 331 (390)
T 3ugv_A 264 QLRHDLKTPLMIGENF-YGPREMHQALQAGACDLV------MPDFMRIGGVSGWMRAAGVAGAWGIPMST-HLYP----E 331 (390)
T ss_dssp HHHHHCSSCEEECTTC-CSHHHHHHHHHTTCCSEE------CCBHHHHTHHHHHHHHHHHHHHHTCCBCC-BSCH----H
T ss_pred HHHHhcCCCEEeCCCc-CCHHHHHHHHHcCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEEee-cCHH----H
Confidence 999999 999999976 569999999999999999 99999999999999999999999999754 5443 3
Q ss_pred HHHHhHhhcC
Q 011677 427 FIADLSVGLA 436 (479)
Q Consensus 427 ~~~dlAv~~~ 436 (479)
+.+|++.++.
T Consensus 332 a~lhl~aa~p 341 (390)
T 3ugv_A 332 VGAHVMRVTE 341 (390)
T ss_dssp HHHHHHTTCT
T ss_pred HHHHHHHhCC
Confidence 4578877763
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=341.39 Aligned_cols=299 Identities=17% Similarity=0.167 Sum_probs=222.6
Q ss_pred CceeeEEEEEEEe--------cCCC----------CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCcccccc
Q 011677 44 PSVITKIKARQIL--------DSRG----------IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNS 105 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----------~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~ 105 (479)
+|+|++|+.+.+. .+.+ +++++|+|+|++|++ |+||+.. + .+.++
T Consensus 12 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~----------G~GE~~~-~-----~~~~~- 74 (393)
T 2og9_A 12 SDRITWVRISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQ----------GLGFSYS-K-----RAGGP- 74 (393)
T ss_dssp CCCEEEEEEEEEEEECSSCCC------------CEEEEEEEEEEETTSCE----------EEEEEEE-E-----STTHH-
T ss_pred CCeEeEEEEEEEeccCCCccccccccccccCCcCCccEEEEEEEECCCCE----------EEEEecC-c-----ccchH-
Confidence 4799999998883 2222 357999999999984 9999832 1 12222
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCc
Q 011677 106 VNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNL 185 (479)
Q Consensus 106 ~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~ 185 (479)
.....++ .++|.|+|+||.+++.+|+.|.+.......+++..+|++|||+||||+.||..|+|||++||| .
T Consensus 75 --~~~~~i~-~l~~~l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~llGg---~--- 145 (393)
T 2og9_A 75 --GQFAHAR-EIAPALIGEDPSDIAKLWDKLCWAGASAGRSGLSTQAIGAFDVALWDLKAKRAGLSLAKLLGS---Y--- 145 (393)
T ss_dssp --HHHHHHH-HHGGGGTTSCTTCHHHHHHHHHHTTGGGCSSSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHCC---S---
T ss_pred --HHHHHHH-HHHHHHcCCChhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C---
Confidence 2222344 599999999999999999999875432222446789999999999999999999999999998 2
Q ss_pred ccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHH
Q 011677 186 TLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREG 265 (479)
Q Consensus 186 ~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~ 265 (479)
+.++|+|+++ ||.+. .+.++ ..+++.+...++|+.+| .|.| . .+.+.+.+.
T Consensus 146 ~~~vp~y~~~-g~~~~---~~~e~---------~~~~a~~~~~~Gf~~vK----ik~g-------~-----~~~~~~~e~ 196 (393)
T 2og9_A 146 RDSVRCYNTS-GGFLH---TPIDQ---------LMVNASASIERGIGGIK----LKVG-------Q-----PDGALDIAR 196 (393)
T ss_dssp CSEEEEEBCT-TCCTT---SCHHH---------HHHHHHHHHHTTCCCEE----EECC-------C-----SCHHHHHHH
T ss_pred CCceEEEEEC-CCcCC---CCHHH---------HHHHHHHHHHcCCCEEE----EecC-------C-----CCHHHHHHH
Confidence 3356667654 23211 12222 23444444444555554 3322 1 123345666
Q ss_pred HHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHH
Q 011677 266 LDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE 344 (479)
Q Consensus 266 l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~ 344 (479)
++.||+++ |.+ ..| +|+| +.||.+++++++. .+++|++.|||||++++|++
T Consensus 197 v~avR~av---g~d-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~~i~~iE~P~~~~~~~ 248 (393)
T 2og9_A 197 VTAVRKHL---GDA-VPLMVDAN-----------------------QQWDRPTAQRMCR-IFEPFNLVWIEEPLDAYDHE 248 (393)
T ss_dssp HHHHHHHH---CTT-SCEEEECT-----------------------TCCCHHHHHHHHH-HHGGGCCSCEECCSCTTCHH
T ss_pred HHHHHHHc---CCC-CEEEEECC-----------------------CCCCHHHHHHHHH-HHHhhCCCEEECCCCcccHH
Confidence 66676666 644 456 8883 3578899998865 48999999999999999999
Q ss_pred HHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCC
Q 011677 345 HTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGET 423 (479)
Q Consensus 345 g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get 423 (479)
++++|++++ +||++||+.. ++++++++++.+++|+| ++|++++||||++++++++|+++|++++ +|++++
T Consensus 249 ~~~~l~~~~~iPIa~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~gi~~~-~h~~~~- 319 (393)
T 2og9_A 249 GHAALALQFDTPIATGEMLT-SAAEHGDLIRHRAADYL------MPDAPRVGGITPFLKIASLAEHAGLMLA-PHFAME- 319 (393)
T ss_dssp HHHHHHHHCSSCEEECTTCC-SHHHHHHHHHTTCCSEE------CCCHHHHTSHHHHHHHHHHHHHTTCEEC-CCSCHH-
T ss_pred HHHHHHHhCCCCEEeCCCcC-CHHHHHHHHHCCCCCEE------eeCccccCCHHHHHHHHHHHHHcCCEEe-ccCccH-
Confidence 999999999 9999999864 69999999999999999 9999999999999999999999999975 576654
Q ss_pred chhHHHHhHhhcCC
Q 011677 424 EDSFIADLSVGLAS 437 (479)
Q Consensus 424 ~d~~~~dlAv~~~~ 437 (479)
+.+|||+++..
T Consensus 320 ---~~~~laaa~~~ 330 (393)
T 2og9_A 320 ---LHVHLAAAYPR 330 (393)
T ss_dssp ---HHHHHHHTSSS
T ss_pred ---HHHHHHhhCCC
Confidence 47899988754
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=343.11 Aligned_cols=309 Identities=16% Similarity=0.127 Sum_probs=216.9
Q ss_pred CceeeEEEEEEEecC---CCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHH------
Q 011677 44 PSVITKIKARQILDS---RGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNIN------ 114 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds---~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~------ 114 (479)
+|+|++|+++.+.-. ..+.++.|+|+|++|++ |+||+... .......++
T Consensus 4 ~mkI~~i~~~~v~~p~~~~~~~~~~V~v~td~G~~----------G~GE~~~~------------~~~~~~~~~~~~~~~ 61 (394)
T 3mqt_A 4 GANIVSVEFIPVNVAATNWSENTVIVKVTDENGVY----------GLGEADGP------------PECMKAFSEIENEHK 61 (394)
T ss_dssp -CCEEEEEEEEEECC-----CEEEEEEEEETTSCE----------EEEEECSC------------HHHHHHHHTCCCCBT
T ss_pred CCeEeEEEEEEEecCCCCCCccEEEEEEEECCCCE----------EEEEECCc------------HHHHHHHHhcccchh
Confidence 479999999998432 24567999999999994 99997531 111112222
Q ss_pred --HHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 115 --ERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 115 --~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+.++|.|+|+||.+.+++|+.|.+.......++...+|++|||+||||+.||.+|+|||++||| ..+.++| .|
T Consensus 62 ~~~~l~p~liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~--~y 136 (394)
T 3mqt_A 62 WLNNIKEAVIGRDPLEFRANYNRMYDTTKWIGMRGLGLFAISGIDMALYDLAGKQLGVPAYKLMGG---AQKAQLT--PY 136 (394)
T ss_dssp TBCCGGGGTTTSCTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CCSSSBC--CE
T ss_pred hHHHHHHHhCCCChhHHHHHHHHHHHhhhhhCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCC---CCCCeEE--EE
Confidence 2389999999999999999999864211112335578999999999999999999999999998 3344554 46
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHh-hhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAE-KYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~-K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
..++... +...+.++. + ....+++.+...++|+++| . |.| .. ..+.+++.+.++.||+
T Consensus 137 ~s~~~~~--~~~~~~~~~-i----~~~~~~a~~~~~~G~~~~K----~~k~g-------~~---~~~~~~d~~~v~avR~ 195 (394)
T 3mqt_A 137 FTLYPSV--AADATLSEI-V----EAYKPLIAKAKERGAKAVK----VCIIP-------ND---KVSDKEIVAYLRELRE 195 (394)
T ss_dssp EECCCCC--CTTCCHHHH-H----HHHHHHHHHHHHTTCSEEE----EECCC-------CT---TSCHHHHHHHHHHHHH
T ss_pred EEecCCC--CCCcchhhh-H----HHHHHHHHHHHHcCCCEEE----ecccC-------CC---ccCHHHHHHHHHHHHH
Confidence 5432101 000000000 0 0011223333334444443 3 322 10 0122344566666666
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCC-CHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFK-SGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~-t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L 349 (479)
++ |.+ ..+ +|+| +.| |.++++++. +.++++++.|||||++++|++++++|
T Consensus 196 a~---G~d-~~l~vDan-----------------------~~~~~~~~A~~~~-~~L~~~~i~~iEeP~~~~~~~~~~~l 247 (394)
T 3mqt_A 196 VI---GWD-MDMMVDCL-----------------------YRWTDWQKARWTF-RQLEDIDLYFIEACLQHDDLIGHQKL 247 (394)
T ss_dssp HH---CSS-SEEEEECT-----------------------TCCSCHHHHHHHH-HHTGGGCCSEEESCSCTTCHHHHHHH
T ss_pred Hh---CCC-CeEEEECC-----------------------CCCCCHHHHHHHH-HHHhhcCCeEEECCCCcccHHHHHHH
Confidence 65 644 355 8883 367 889999875 55899999999999999999999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--h
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--S 426 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~ 426 (479)
++++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|++++ .|+. ++.. +
T Consensus 248 ~~~~~iPIa~dE~~~-~~~~~~~~l~~~~~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~-~h~~-~s~i~~a 318 (394)
T 3mqt_A 248 AAAINTRLCGAEMST-TRFEAQEWLEKTGISVV------QSDYNRCGGVTELLRIMDICEHHNAQLM-PHNW-KTGITAA 318 (394)
T ss_dssp HHHSSSEEEECTTCC-HHHHHHHHHHHHCCSEE------CCCTTTSSCHHHHHHHHHHHHHHTCEEC-CCCC-SCHHHHH
T ss_pred HhhCCCCEEeCCCcC-CHHHHHHHHHcCCCCeE------ecCccccCCHHHHHHHHHHHHHcCCEEe-ccCC-CchHHHH
Confidence 9999 9999999865 59999999999999999 9999999999999999999999999986 5655 6654 4
Q ss_pred HHHHhHhhcCC
Q 011677 427 FIADLSVGLAS 437 (479)
Q Consensus 427 ~~~dlAv~~~~ 437 (479)
+.+||+.++..
T Consensus 319 a~~hlaaa~p~ 329 (394)
T 3mqt_A 319 AARHFGIVCHI 329 (394)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHhCCC
Confidence 56777766643
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=340.09 Aligned_cols=294 Identities=21% Similarity=0.216 Sum_probs=223.2
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.| +..+.|+|+|++|++ |+||+.++ +.|.+++...+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 65 (368)
T 3q45_A 1 MIITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHI----------GYGECSPF-----MTIHGESMDTAFIV 65 (368)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCE----------EEEEECCC-----HHHHSCCHHHHHHH
T ss_pred CEEEEEEEEEEEeecCCCEEccCceEeeeeEEEEEEEECCCCE----------EEeeccCC-----CCcCCCCHHHHHHH
Confidence 689999988772 2332 356899999999994 99998764 24567777777766
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCccc-ccce
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTL-PVPA 191 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~-Pvp~ 191 (479)
+ +.++|.|+|+||.+.+++|+.|.+... + . ..|++|||+||||+.||..|+|||++||| . +.++ |+
T Consensus 66 ~-~~l~~~l~G~d~~~~~~~~~~l~~~~~-~---~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg---~-~~~v~~~-- 132 (368)
T 3q45_A 66 G-QYLAKGLIGTSCLDIVSNSLLMDAIIY-G---N--SCIKSAFNIALYDLAAQHAGLPLYAFLGG---K-KDKIIQT-- 132 (368)
T ss_dssp H-HHHHHHHTTSBTTCHHHHHHHHHHHCS-C---C--HHHHHHHHHHHHHHHHHHHTSBHHHHTTC---C-CCSCEEB--
T ss_pred H-HHHHHHhcCCChhhHHHHHHHHHHHhc-C---C--HHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CCeeeee--
Confidence 6 479999999999999999999976321 1 1 47999999999999999999999999998 3 2344 43
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
+..++.+ + .+...+++.+...++|+.+| .|.|. +.+.+.+.++.||+
T Consensus 133 ~~~~~~~-------~---------~e~~~~~a~~~~~~G~~~~K----~KvG~-------------~~~~d~~~v~avR~ 179 (368)
T 3q45_A 133 DYTVSID-------E---------PHKMAADAVQIKKNGFEIIK----VKVGG-------------SKELDVERIRMIRE 179 (368)
T ss_dssp CEEECSC-------C---------HHHHHHHHHHHHHTTCSEEE----EECCS-------------CHHHHHHHHHHHHH
T ss_pred EEEecCC-------C---------HHHHHHHHHHHHHcCCCeEE----EEecC-------------CHHHHHHHHHHHHH
Confidence 3222211 0 11233444444445565554 45331 12345666666666
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
++ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|+
T Consensus 180 ~~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l~ 231 (368)
T 3q45_A 180 AA---GDS-ITLRIDAN-----------------------QGWSVETAIETL-TLLEPYNIQHCEEPVSRNLYTALPKIR 231 (368)
T ss_dssp HH---CSS-SEEEEECT-----------------------TCBCHHHHHHHH-HHHGGGCCSCEECCBCGGGGGGHHHHH
T ss_pred Hh---CCC-CeEEEECC-----------------------CCCChHHHHHHH-HHHhhcCCCEEECCCChhHHHHHHHHH
Confidence 66 644 356 8883 367889999875 457999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hH
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SF 427 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~ 427 (479)
+++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|+ .|+.. ++
T Consensus 232 ~~~~iPIa~dE~~-~~~~~~~~~~~~~~~d~v------~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~-~es~i~~aa 303 (368)
T 3q45_A 232 QACRIPIMADESC-CNSFDAERLIQIQACDSF------NLKLSKSAGITNALNIIRLAEQAHMPVQVGGF-LESRLGFTA 303 (368)
T ss_dssp HTCSSCEEESTTC-CSHHHHHHHHHTTCCSEE------EECTTTTTSHHHHHHHHHHHHHTTCCEEECCS-SCCHHHHHH
T ss_pred hhCCCCEEEcCCc-CCHHHHHHHHHcCCCCeE------EechhhcCCHHHHHHHHHHHHHcCCcEEecCc-cccHHHHHH
Confidence 999 999999976 569999999999999999 99999999999999999999999999988665 46655 45
Q ss_pred HHHhHhhc
Q 011677 428 IADLSVGL 435 (479)
Q Consensus 428 ~~dlAv~~ 435 (479)
.+|||.++
T Consensus 304 ~~hlaaa~ 311 (368)
T 3q45_A 304 AAHVALVS 311 (368)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHcC
Confidence 56666554
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=341.76 Aligned_cols=324 Identities=15% Similarity=0.122 Sum_probs=218.0
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
+|+|++|++..+- .++..+.|+|+|++|++ |+||+. |++ ..+...|.+.++|.|+|
T Consensus 3 ~mkIt~v~~~~~~--~~~~~~~V~v~td~G~~----------G~GE~~---------~~~---~~~~~~i~~~l~p~liG 58 (410)
T 3dip_A 3 LPRITALRTIRLP--ERPKLIWVEVETEDGLT----------GLGETF---------RGA---QAVEAVLHEQTAPAIIG 58 (410)
T ss_dssp CCBEEEEEEEEET--TEEEEEEEEEEETTSCE----------EEEEEE---------SCH---HHHHHHHHHTHHHHHTT
T ss_pred CCeEEEEEEEEEC--CCCCEEEEEEEECCCCE----------EEEeCC---------CCh---HHHHHHHHHHHHHHhcC
Confidence 4799999998772 24567999999999994 999932 222 34455677779999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCc-cCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGK-HAG 202 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~-~~~ 202 (479)
+||.+.+++|+.|.+.......+....+|++|||+||||+.||.+|+|||+|||| ..+.++|+..+....+|. +..
T Consensus 59 ~dp~~~e~~~~~~~~~~~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~~yas~~~~~g~~~~~ 135 (410)
T 3dip_A 59 RAAENITSISSELLNPYVGFGSSSAEVRAASAVDIALWDLAGQRAGVPLHVALGG---AARDRVPVYATCAGYDFNTSLG 135 (410)
T ss_dssp SBTTCHHHHHHHHTCCSSSCSSCCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSCSEEEEEEEECTTTC-----
T ss_pred CCcchHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCC---CcCCceeEEEeccccccccccc
Confidence 9999999999999752111222345578999999999999999999999999998 344566654321111121 000
Q ss_pred Ccc------cccceeeccC--CCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCC--CCCchHHHHHHHHHH
Q 011677 203 NNL------AIQDIMILPI--GASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAP--NISSIREGLDLVKEA 272 (479)
Q Consensus 203 ~~l------~~~e~~i~p~--~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~--~~~~~~~~l~~v~~a 272 (479)
..+ +.+.-+--|. .....+.+.+...++|+++|.. ++|....++| ...+ +++.+.+.++.||++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~~---~~~~~~~K~G---~~~~~~~~~~d~e~v~avR~a 209 (410)
T 3dip_A 136 GRRSIGSAELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIW---PFDDFASITP---HHISLTDLKDGLEPFRKIRAA 209 (410)
T ss_dssp -----------------------CHHHHHHHHHHTTCSEEEEC---TTHHHHTTCT---TCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhhhhhHHHHHHHHHHcCCCEEEEC---CccCcccccc---CcCCHHHHHHHHHHHHHHHHH
Confidence 000 0000000000 0001122223333445554410 0000000122 1111 122345556666666
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecC-CCccCHHHHHHHH
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDP-FDKEDWEHTKSVL 350 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP-~~~~D~~g~~~L~ 350 (479)
+ |.+ ..| +|+| +.||.++++++. +.++++++.||||| ++++|++++++|+
T Consensus 210 ~---g~d-~~l~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEqP~~~~~~~~~~~~l~ 261 (410)
T 3dip_A 210 V---GQR-IEIMCELH-----------------------SLWGTHAAARIC-NALADYGVLWVEDPIAKMDNIPAVADLR 261 (410)
T ss_dssp H---TTS-SEEEEECT-----------------------TCBCHHHHHHHH-HHGGGGTCSEEECCBSCTTCHHHHHHHH
T ss_pred c---CCC-ceEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCCCcccHHHHHHHH
Confidence 5 644 356 8883 367899999875 56899999999999 8999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIA 429 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~ 429 (479)
+++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|+++++ |.++....++.+
T Consensus 262 ~~~~iPIa~dE~~-~~~~~~~~~l~~~~~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~-h~~s~i~~aa~~ 333 (410)
T 3dip_A 262 RQTRAPICGGENL-AGTRRFHEMLCADAIDFV------MLDLTWCGGLSEGRKIAALAETHARPLAP-HXTGPVALMAGL 333 (410)
T ss_dssp HHHCCCEEECTTC-CSHHHHHHHHHTTCCSEE------EECTTTSSCHHHHHHHHHHHHHTTCCEEE-CSSCHHHHHHHH
T ss_pred hhCCCCEEecCCc-CCHHHHHHHHHcCCCCeE------eecccccCCHHHHHHHHHHHHHcCCEEee-eCccHHHHHHHH
Confidence 999 999999986 569999999999999999 99999999999999999999999999865 544222345677
Q ss_pred HhHhhcC
Q 011677 430 DLSVGLA 436 (479)
Q Consensus 430 dlAv~~~ 436 (479)
|||.++.
T Consensus 334 hlaaa~p 340 (410)
T 3dip_A 334 HLALHAP 340 (410)
T ss_dssp HHHHHCT
T ss_pred HHHHhCC
Confidence 7777764
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=341.68 Aligned_cols=299 Identities=15% Similarity=0.123 Sum_probs=220.0
Q ss_pred CceeeEEEEEEEecC----------C----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHH
Q 011677 44 PSVITKIKARQILDS----------R----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRA 109 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds----------~----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~a 109 (479)
||+|++|+.+.+--. . .++.+.|+|+|++|+ +|+||+.. +.+..+ +.
T Consensus 2 ~MkI~~i~~~~~~~pl~~~~p~~~a~~~~~~~~~~~V~v~td~G~----------~G~GE~~~------~~~~~~---~~ 62 (389)
T 3ozy_A 2 SLKITEVKAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGV----------TGVGSPSG------PYDLAV---LK 62 (389)
T ss_dssp CCCEEEEEEEEEEEECCGGGCCEETTEEBCEEEEEEEEEEETTSC----------CEEECCCS------SSCHHH---HH
T ss_pred CCEEEEEEEEEEeccCcCCCcccccccccccceEEEEEEEECCCC----------EEEEecCC------CCCchH---HH
Confidence 689999999988422 1 135789999999998 59999762 122333 33
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHhh---hccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcc
Q 011677 110 VKNINERISEALVGMDPILQSQIDQAMIDL---DKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLT 186 (479)
Q Consensus 110 v~~i~~~l~p~LiG~d~~~~~~id~~l~~~---~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~ 186 (479)
...++ .++|.|+|+||.+.+++|+.|.+. .+.+ .+....+|++|||+||||+.||.+|+|||++||| ..+.+
T Consensus 63 ~~~i~-~l~p~l~G~d~~~~~~~~~~l~~~~~~~~~g-~~~~~~~A~said~AlwDl~gK~~g~Pl~~LLGg---~~r~~ 137 (389)
T 3ozy_A 63 RAIED-VIGPQLIGEDPANINYLWHKVFHGEVSRNLG-HRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGG---KFHTR 137 (389)
T ss_dssp HHHHH-TTHHHHTTSCTTCHHHHHHHHHHHTHHHHHC-SBSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTS---CSSTT
T ss_pred HHHHH-HHHHHHcCCCcchHHHHHHHHHhhhhhhccC-CchHHHHHHHHHHHHHHHHhHhHcCCCHHHHhCC---cccCC
Confidence 33454 499999999999999999999763 2211 1234578999999999999999999999999998 32344
Q ss_pred -cccceEEeecC-CccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHH
Q 011677 187 -LPVPAFTVISG-GKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIRE 264 (479)
Q Consensus 187 -~Pvp~~~~i~G-G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~ 264 (479)
+| +|+.+.| +. +. +...+++.+...++|+.+| .|.| . +.+.+.+
T Consensus 138 ~v~--~y~~~~~~~~------~~---------e~~~~~a~~~~~~G~~~iK----iKvG----------~---~~~~d~~ 183 (389)
T 3ozy_A 138 GVR--AYASSIYWDL------TP---------DQAADELAGWVEQGFTAAK----LKVG----------R---APRKDAA 183 (389)
T ss_dssp CEE--EEEEEECSSC------CH---------HHHHHHHHHHHHTTCSEEE----EECC----------S---CHHHHHH
T ss_pred cee--eEEecCCCCC------CH---------HHHHHHHHHHHHCCCCEEe----eccC----------C---CHHHHHH
Confidence 44 4654422 10 11 1123333333344555544 3433 1 2344566
Q ss_pred HHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCH
Q 011677 265 GLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343 (479)
Q Consensus 265 ~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~ 343 (479)
.++.||+++ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|+
T Consensus 184 ~v~avR~a~---g~d-~~l~vDan-----------------------~~~~~~~A~~~~-~~l~~~~i~~iEqP~~~~d~ 235 (389)
T 3ozy_A 184 NLRAMRQRV---GAD-VEILVDAN-----------------------QSLGRHDALAML-RILDEAGCYWFEEPLSIDDI 235 (389)
T ss_dssp HHHHHHHHH---CTT-SEEEEECT-----------------------TCCCHHHHHHHH-HHHHHTTCSEEESCSCTTCH
T ss_pred HHHHHHHHc---CCC-ceEEEECC-----------------------CCcCHHHHHHHH-HHHHhcCCCEEECCCCcccH
Confidence 666666666 644 455 8883 367889999875 55899999999999999999
Q ss_pred HHHHHHH-hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCC
Q 011677 344 EHTKSVL-QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG 421 (479)
Q Consensus 344 ~g~~~L~-~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~g 421 (479)
+++++|+ +++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|+++++ |+.
T Consensus 236 ~~~~~l~~~~~~iPIa~dE~i~-~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~ia~~A~~~gi~~~~-h~~- 306 (389)
T 3ozy_A 236 EGHRILRAQGTPVRIATGENLY-TRNAFNDYIRNDAIDVL------QADASRAGGITEALAISASAASAHLAWNP-HTF- 306 (389)
T ss_dssp HHHHHHHTTCCSSEEEECTTCC-HHHHHHHHHHTTCCSEE------CCCTTTSSCHHHHHHHHHHHHHTTCEECC-CCT-
T ss_pred HHHHHHHhcCCCCCEEeCCCCC-CHHHHHHHHHcCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEEEe-cCC-
Confidence 9999999 999 9999999865 59999999999999999 99999999999999999999999999865 544
Q ss_pred CCch--hHHHHhHhhcCC
Q 011677 422 ETED--SFIADLSVGLAS 437 (479)
Q Consensus 422 et~d--~~~~dlAv~~~~ 437 (479)
++.. ++.+|||.++..
T Consensus 307 ~~~i~~aa~~hlaaa~~~ 324 (389)
T 3ozy_A 307 NDIITVAANLHLVAASPH 324 (389)
T ss_dssp TSHHHHHHHHHHHHHCCS
T ss_pred CcHHHHHHHHHHHHhCCC
Confidence 5544 466777777644
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=343.50 Aligned_cols=292 Identities=17% Similarity=0.138 Sum_probs=223.3
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
||+|++|+.+.+. .+.+ ++++.|+|+|+ |++ |+||+...+. +.|.++++.++..
T Consensus 7 ~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td-G~~----------G~GE~~~~~~---~~~~~e~~~~~~~ 72 (375)
T 1r0m_A 7 MFKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHGE-GVQ----------GVAEGTMEAR---PMYREETIAGALD 72 (375)
T ss_dssp CEECCEEEEEEEEEEBC----------CEEEEEEEEEEET-TEE----------EEEECCCBSS---SSSSSCBHHHHHH
T ss_pred ccEEEEEEEEEEeeecCCCeEecceEEeeccEEEEEEEEC-CeE----------EEEEEecCCC---CcccCCCHHHHHH
Confidence 6899999998883 1222 35799999995 984 9999876432 4688899998988
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.+++.++|.|+|+|+.+++++|+.|..+. + +.+|++|||+||||+.||..|+|||++||| . +.++|++
T Consensus 73 ~i~~~l~~~l~g~d~~~~~~l~~~~~~~~-----g--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~-~~~~~~~- 140 (375)
T 1r0m_A 73 LLRGTFLPAILGQTFANPEAVSDALGSYR-----G--NRMARAMVEMAAWDLWARTLGVPLGTLLGG---H-KEQVEVG- 140 (375)
T ss_dssp HHHHTHHHHHTTCEESSHHHHHHTTTTSC-----S--CHHHHHHHHHHHHHHHHHHHTCBHHHHHTC---C-CSEEEBC-
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHcc-----C--chHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CCceeee-
Confidence 89888999999999999999988764332 1 257999999999999999999999999998 3 2355665
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
|++ |.+. +.++ ..+++.+...++|+.+| .| ++ + +.+.+.++.||+
T Consensus 141 ~~~---g~~~----~~~~---------~~~~a~~~~~~G~~~iK----ik-------~~------~--~~d~~~v~avr~ 185 (375)
T 1r0m_A 141 VSL---GIQA----DEQA---------TVDLVRRHVEQGYRRIK----LK-------IK------P--GWDVQPVRATRE 185 (375)
T ss_dssp EEE---CCCS----SHHH---------HHHHHHHHHHTTCSCEE----EE-------CB------T--TBSHHHHHHHHH
T ss_pred EEe---cCCC----CHHH---------HHHHHHHHHHhcccEEE----Ee-------cC------h--HHHHHHHHHHHH
Confidence 442 2210 1221 23444444445555544 23 11 2 234677777776
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
++ .+ ..+ +|+| +.||.++ ++++. .+++|++.|||||++++|+++|++|+
T Consensus 186 a~----~~-~~l~vDan-----------------------~~~~~~~-~~~~~-~l~~~~i~~iEqP~~~~d~~~~~~l~ 235 (375)
T 1r0m_A 186 AF----PD-IRLTVDAN-----------------------SAYTLAD-AGRLR-QLDEYDLTYIEQPLAWDDLVDHAELA 235 (375)
T ss_dssp HC----TT-SCEEEECT-----------------------TCCCGGG-HHHHH-TTGGGCCSCEECCSCTTCSHHHHHHH
T ss_pred Hc----CC-CeEEEeCC-----------------------CCCCHHH-HHHHH-HHHhCCCcEEECCCCcccHHHHHHHH
Confidence 65 12 346 9983 2457778 87754 58999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhH--
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSF-- 427 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~-- 427 (479)
+++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|+++|++|+. |+..+.
T Consensus 236 ~~~~ipIa~dE~~-~~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~-es~i~~aa 307 (375)
T 1r0m_A 236 RRIRTPLCLDESV-ASASDARKALALGAGGVI------NLKVARVGGHAESRRVHDVAQSFGAPVWCGGML-ESGIGRAH 307 (375)
T ss_dssp HHCSSCEEESTTC-CSHHHHHHHHHHTSCSEE------EECTTTTTSHHHHHHHHHHHHHTTCCEEECCCC-CCHHHHHH
T ss_pred HhCCCCEEecCcc-CCHHHHHHHHHhCCCCEE------EECcchhcCHHHHHHHHHHHHHcCCcEEecCcc-ccHHHHHH
Confidence 999 999999986 669999999999999999 999999999999999999999999999999986 665554
Q ss_pred HHHhHhhc
Q 011677 428 IADLSVGL 435 (479)
Q Consensus 428 ~~dlAv~~ 435 (479)
.+||| ++
T Consensus 308 ~~hla-a~ 314 (375)
T 1r0m_A 308 NIHLS-TL 314 (375)
T ss_dssp HHHHT-TS
T ss_pred HHHHH-cC
Confidence 56666 44
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=340.36 Aligned_cols=298 Identities=15% Similarity=0.107 Sum_probs=222.3
Q ss_pred CceeeEEEEEEEec--------CCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCcc-ccccHHHHH
Q 011677 44 PSVITKIKARQILD--------SRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTY-LGNSVNRAV 110 (479)
Q Consensus 44 ~~~I~~I~~~~i~d--------s~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y-~g~~~~~av 110 (479)
||+|++|+.+.+.- +.+ .+.+.|+|+|++|++ |+||+... .+ .+.+...
T Consensus 9 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~------~~~~~~~~~~-- 70 (392)
T 3ddm_A 9 SITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAV----------GWGEVWCN------FPACGAEHRA-- 70 (392)
T ss_dssp CBCCCEEEEEEEEEEC-----------CEEEEEEEEEECTTSCE----------EEEECCCC------SSTTHHHHHH--
T ss_pred CCEEEEEEEEEEeccCCCcccCcCceeecceEEEEEEEECCCCE----------EEEEeccC------CCCCchHHHH--
Confidence 78999999998832 222 357899999999984 99998531 11 1112222
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhh----hccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcc
Q 011677 111 KNINERISEALVGMDPILQSQIDQAMIDL----DKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLT 186 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~l~~~----~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~ 186 (479)
..|++.++|.|+|+||.+.+++|+.|.+. ....+..+...+|++|||+||||+.||.+|+|||++||| .. .+
T Consensus 71 ~~i~~~l~p~liG~d~~~~~~~~~~l~~~~~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg---~~-~~ 146 (392)
T 3ddm_A 71 RLVETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAGQPLWAWLGG---SG-DR 146 (392)
T ss_dssp HHHHHTHHHHHTTSCBSSHHHHHHHHHHTTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTC---SC-CE
T ss_pred HHHHHHHHHHhCCCCcCCHHHHHHHHHhhhhhhhhhcCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCC---CC-Cc
Confidence 24567899999999999999999999764 100111124468999999999999999999999999998 32 45
Q ss_pred cccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHH
Q 011677 187 LPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGL 266 (479)
Q Consensus 187 ~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l 266 (479)
+| +|++ |. . | +...+++.+...++|+.+| .|.|. +.+.+.+.+
T Consensus 147 v~--~y~~--g~-------~-------~--e~~~~~a~~~~~~G~~~iK----lK~g~-------------~~~~d~~~v 189 (392)
T 3ddm_A 147 IG--VYAS--GI-------N-------P--ENPEDVVARKAAEGYRAFK----LKVGF-------------DDARDVRNA 189 (392)
T ss_dssp EE--EEEE--EE-------C-------S--SSHHHHHHHHHHHTCCCEE----EECSS-------------CHHHHHHHH
T ss_pred ee--EEee--cC-------C-------H--HHHHHHHHHHHHcCCCEEE----EecCC-------------CHHHHHHHH
Confidence 44 4654 21 1 1 2334555555556676665 45331 223456666
Q ss_pred HHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccC-HH
Q 011677 267 DLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED-WE 344 (479)
Q Consensus 267 ~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D-~~ 344 (479)
+.||+++ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++| ++
T Consensus 190 ~avR~a~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEeP~~~~d~~~ 241 (392)
T 3ddm_A 190 LHVRELL---GAA-TPLMADAN-----------------------QGWDLPRARQMA-QRLGPAQLDWLEEPLRADRPAA 241 (392)
T ss_dssp HHHHHHH---CSS-SCEEEECT-----------------------TCCCHHHHHHHH-HHHGGGCCSEEECCSCTTSCHH
T ss_pred HHHHHhc---CCC-ceEEEeCC-----------------------CCCCHHHHHHHH-HHHHHhCCCEEECCCCccchHH
Confidence 6666666 644 456 8883 367889999875 5689999999999999999 99
Q ss_pred HHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCC
Q 011677 345 HTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGET 423 (479)
Q Consensus 345 g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get 423 (479)
++++|++++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|+++ ++|+. ++
T Consensus 242 ~~~~l~~~~~iPIa~dE~~-~~~~~~~~~i~~~a~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~-~~h~~-~~ 312 (392)
T 3ddm_A 242 EWAELAQAAPMPLAGGENI-AGVAAFETALAARSLRVM------QPDLAKWGGFSGCLPVARAVVAAGLRY-CPHYL-GA 312 (392)
T ss_dssp HHHHHHHHCSSCEEECTTC-CSHHHHHHHHHHTCEEEE------CCCTTTTTHHHHHHHHHHHHHHTTCEE-CCEEC-SC
T ss_pred HHHHHHHhcCCCEEeCCCC-CCHHHHHHHHHcCCCCEE------EeCcchhCCHHHHHHHHHHHHHcCCEE-EecCC-ch
Confidence 999999999 999999986 569999999999999999 999999999999999999999999998 57864 55
Q ss_pred ch--hHHHHhHhhcCC
Q 011677 424 ED--SFIADLSVGLAS 437 (479)
Q Consensus 424 ~d--~~~~dlAv~~~~ 437 (479)
.. ++.+||+.++..
T Consensus 313 ~i~~aa~~hl~aa~p~ 328 (392)
T 3ddm_A 313 GIGLQASAHLLAAVPG 328 (392)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 44 466777777644
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=349.74 Aligned_cols=300 Identities=16% Similarity=0.159 Sum_probs=222.3
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. ++.| ...+.|+|+|++|++ |+||+.++ +.|.+++...+..
T Consensus 26 ~mkI~~i~~~~~~~Pl~~p~~~a~g~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~ 90 (393)
T 3u9i_A 26 PTTIRALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELTDGTR----------GYGEAAPF-----PAFNGETQDMAHA 90 (393)
T ss_dssp TTBEEEEEEEEEEEEBCC----------EEEEEEEEEEETTSCE----------EEEEECCC-----HHHHSCCHHHHHH
T ss_pred CcEEEEEEEEEEEEecCCceEccCceEEeeeEEEEEEEECCCCE----------EEEEeeCC-----CCcCcCCHHHHHH
Confidence 4799999999883 2222 357899999999984 99998765 3467788887777
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.++ .++|.|+|+||.+.+++|+.|.+... ...+|++|||+||||+.||..|+|||++||| .. .++|+
T Consensus 91 ~l~-~l~p~l~G~d~~~~~~~~~~l~~~~~------~~~~A~said~ALwDl~gK~~g~Pl~~LLGg---~~-~~v~~-- 157 (393)
T 3u9i_A 91 AIL-AARSLVEGADVREWRRIALALPALPG------MTGSARCAIETAILDALTRRARLPLWAFFGG---AA-TSLET-- 157 (393)
T ss_dssp HHH-HTHHHHTTSBGGGHHHHHHHGGGSTT------CCHHHHHHHHHHHHHHHHHHTTCBHHHHTTC---SC-SEEEC--
T ss_pred HHH-HHHHHhcCCCcCCHHHHHHHHHHhcC------ccHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---CC-CceEE--
Confidence 774 69999999999999999998865321 1257999999999999999999999999998 32 45554
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCC---CCchHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPN---ISSIREGLDL 268 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~---~~~~~~~l~~ 268 (479)
+..++.+ ..+...+++.+...++|+.+| .|.|.. ...... .+++.++++.
T Consensus 158 ~~t~~~~----------------~~e~~~~~a~~~~~~Gf~~iK----lKvg~~-------~~~~~~~~~~~~di~~v~a 210 (393)
T 3u9i_A 158 DVTITTG----------------SVTAAARAAQAIVARGVTTIK----IKIGAG-------DPDATTIRTMEHDLARIVA 210 (393)
T ss_dssp CEEEC-------------------CHHHHHHHHHHHTTTCCEEE----EECC--------------CHHHHHHHHHHHHH
T ss_pred EEEecCC----------------CHHHHHHHHHHHHHcCCCeEE----EEeCCC-------cccccccccHHHHHHHHHH
Confidence 3332211 112234445555555666655 454421 000000 2234455555
Q ss_pred HHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHH--hhCCceeeecCCCccCHHH
Q 011677 269 VKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELC--ADYPIVSIEDPFDKEDWEH 345 (479)
Q Consensus 269 v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll--~~~~i~~iEdP~~~~D~~g 345 (479)
||+++ | + .++ +|+| +.||.++++++. +.+ ++|+|.|||||++++|+++
T Consensus 211 vR~a~---~-d-~~L~vDaN-----------------------~~w~~~~A~~~~-~~L~~~~~~i~~iEeP~~~~d~~~ 261 (393)
T 3u9i_A 211 IRDVA---P-T-ARLILDGN-----------------------CGYTAPDALRLL-DMLGVHGIVPALFEQPVAKDDEEG 261 (393)
T ss_dssp HHHHS---T-T-SEEEEECC-----------------------SCCCHHHHHHHH-HTTTTTTCCCSEEECCSCTTCTTH
T ss_pred HHHHC---C-C-CeEEEEcc-----------------------CCCCHHHHHHHH-HHHhhCCCCeEEEECCCCCCcHHH
Confidence 55554 3 2 356 9984 367899999875 558 8899999999999999999
Q ss_pred HHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCc
Q 011677 346 TKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETE 424 (479)
Q Consensus 346 ~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~ 424 (479)
+++|++++ +||++||+.. ++++++++++.+++|++ |+|+++ ||||++++++++|+++|++++++++ .|+.
T Consensus 262 ~~~l~~~~~iPIa~dE~~~-~~~~~~~~i~~~a~d~i------~~k~~~-GGit~~~~ia~~A~~~gi~~~~~~~-~es~ 332 (393)
T 3u9i_A 262 LRRLTATRRVPVAADESVA-SATDAARLARNAAVDVL------NIKLMK-CGIVEALDIAAIARTAGLHLMIGGM-VESL 332 (393)
T ss_dssp HHHHHHTCSSCEEESTTCC-SHHHHHHHHHTTCCSEE------EECHHH-HCHHHHHHHHHHHHHHTCEEEECCS-SCCH
T ss_pred HHHHHhhCCCcEEeCCcCC-CHHHHHHHHHcCCCCEE------Eecccc-cCHHHHHHHHHHHHHcCCeEEecCC-cccH
Confidence 99999999 9999999864 59999999999999999 999999 9999999999999999999877554 4654
Q ss_pred h--hHHHHhHhhcC
Q 011677 425 D--SFIADLSVGLA 436 (479)
Q Consensus 425 d--~~~~dlAv~~~ 436 (479)
. ++.+|||.++.
T Consensus 333 ig~aa~~hlaaa~p 346 (393)
T 3u9i_A 333 LAMTVSACFAAGQG 346 (393)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCC
Confidence 4 56677777654
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=344.75 Aligned_cols=302 Identities=18% Similarity=0.190 Sum_probs=219.6
Q ss_pred CceeeEEEEEEEe------------------------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeecc
Q 011677 44 PSVITKIKARQIL------------------------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRD 95 (479)
Q Consensus 44 ~~~I~~I~~~~i~------------------------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d 95 (479)
.|+|++|+++.+- ++++ +.++.|+|+|++|++ |+||+..
T Consensus 22 ~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~lV~v~td~G~~----------G~GE~~~--- 88 (412)
T 3stp_A 22 SMKIKSVRTRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSFRFHQWLTCEVETEDGTI----------GIGNAAL--- 88 (412)
T ss_dssp -CCEEEEEEEEEEECSCCCCCCSSSCCCGGGGSCCCSCTTTTTCCCEEEEEEEEETTSCE----------EEEEECS---
T ss_pred ccEEEEEEEEEEeccCCCCCCCCCCCCCchhccCCCCCcceEEEeccEEEEEEEECCCCE----------EEEeccC---
Confidence 3699999997772 1221 336999999999994 9999743
Q ss_pred CCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHH
Q 011677 96 GDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKH 175 (479)
Q Consensus 96 ~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~l 175 (479)
.+ ..+...|++.++|.|+|+||.+.+++|+.|.+.....+.+++..+|++|||+||||+.||.+|+|||++
T Consensus 89 ------~~---~~~~~~i~~~l~p~LiG~dp~~~e~l~~~~~~~~~~~g~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~L 159 (412)
T 3stp_A 89 ------AP---SVVKKVIDDWYAPLVIGEDPFDYAYIWEKMYRRSHAWGRKGIGMTAISAIDIAIWDLMGKLVGKPVFKL 159 (412)
T ss_dssp ------SH---HHHHHHHHHTTHHHHTTSCGGGHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHTTCBHHHH
T ss_pred ------CH---HHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCHHHh
Confidence 11 245556777799999999999999999999863211112235578999999999999999999999999
Q ss_pred HhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCC
Q 011677 176 IADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGL 255 (479)
Q Consensus 176 Lgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~ 255 (479)
||| ..+.++ |+|+... + .+ +. +...+++.+...++|+.+| .|.|..+. +|+
T Consensus 160 LGG---~~r~~v--~~y~s~~-~--~~---~~---------e~~~~~a~~~~~~Gf~~iK----ik~g~gp~----dg~- 210 (412)
T 3stp_A 160 LGG---RTKDRI--PVYYSKL-Y--AG---SI---------EAMQKEAEEAMKGGYKAFK----SRFGYGPK----DGM- 210 (412)
T ss_dssp HTC---CSSSSE--EEEEECC-C--SC---CH---------HHHHHHHHHHHTTTCSEEE----EECCCCGG----GHH-
T ss_pred cCC---CCCceE--EEEEEec-C--CC---CH---------HHHHHHHHHHHHcCCCEEE----EecccCcc----ccc-
Confidence 998 334454 4455310 1 00 11 1123344444444555544 45332100 011
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceee
Q 011677 256 APNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSI 334 (479)
Q Consensus 256 ~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~i 334 (479)
..++.+.+.++.||+++ |.+ ..| +|+| +.||.++++++. +.++++++.||
T Consensus 211 -~~~~~die~v~avReav---G~d-~~L~vDaN-----------------------~~~~~~~Ai~~~-~~Le~~~i~~i 261 (412)
T 3stp_A 211 -PGMRENLKRVEAVREVI---GYD-NDLMLECY-----------------------MGWNLDYAKRML-PKLAPYEPRWL 261 (412)
T ss_dssp -HHHHHHHHHHHHHHHHH---CSS-SEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCCSEE
T ss_pred -chHHHHHHHHHHHHHHc---CCC-CeEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCCEE
Confidence 11223455566666655 644 456 8883 367899999875 55899999999
Q ss_pred ecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCe
Q 011677 335 EDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWG 413 (479)
Q Consensus 335 EdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~ 413 (479)
|||++++|++++++|++++ +||++||+. .++++++++++.+++|+| ++|++++||||++++++++|+++|++
T Consensus 262 EeP~~~~d~~~~~~l~~~~~iPIa~dE~~-~~~~~~~~li~~~a~D~v------~ik~~~~GGit~a~kia~~A~a~gi~ 334 (412)
T 3stp_A 262 EEPVIADDVAGYAELNAMNIVPISGGEHE-FSVIGCAELINRKAVSVL------QYDTNRVGGITAAQKINAIAEAAQIP 334 (412)
T ss_dssp ECCSCTTCHHHHHHHHHTCSSCEEECTTC-CSHHHHHHHHHTTCCSEE------CCCHHHHTHHHHHHHHHHHHHHHTCC
T ss_pred ECCCCcccHHHHHHHHhCCCCCEEeCCCC-CCHHHHHHHHHcCCCCEE------ecChhhcCCHHHHHHHHHHHHHcCCE
Confidence 9999999999999999999 999999986 459999999999999999 99999999999999999999999999
Q ss_pred EEEecCCCCCchhHHHHhHhhcCC
Q 011677 414 VVISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 414 ~~v~h~~get~d~~~~dlAv~~~~ 437 (479)
+++ |+ ..++.+||+.++.+
T Consensus 335 v~~-h~----~~aa~~hlaaA~~~ 353 (412)
T 3stp_A 335 VIP-HA----GQMHNYHLTMANTN 353 (412)
T ss_dssp BCC-SS----CSHHHHHHHHTCTT
T ss_pred EEe-cc----HHHHHHHHHHhCCC
Confidence 865 44 35678899877643
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-41 Score=345.24 Aligned_cols=298 Identities=14% Similarity=0.142 Sum_probs=226.2
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.| +..+.|+|+|++|++ |+||+..+.. +.|.++++..+...
T Consensus 1 MkI~~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v~td~G~~----------G~GE~~~~~~---p~~~~e~~~~~~~~ 67 (388)
T 3qld_A 1 MSLQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIE----------GWSECVALAE---PTYTEECTDTAWVM 67 (388)
T ss_dssp -CEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCE----------EEEEECCCSS---TTSSSCCHHHHHHH
T ss_pred CEEEEEEEEEEecccCCceEccceEEEeeeEEEEEEEECCCCE----------EEEecccCCC---CccccccHHHHHHH
Confidence 689999988873 3443 357999999999984 9999876432 56888898888888
Q ss_pred HHHHHHHhhc-------CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCc
Q 011677 113 INERISEALV-------GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNL 185 (479)
Q Consensus 113 i~~~l~p~Li-------G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~ 185 (479)
+++.++|.|+ |+++.+++++++.|..+.+ ...|++|||+||||+.||..|+|||++||| . +.
T Consensus 68 l~~~l~p~l~~~~~~~~G~~~~~~~~~~~~~~~~~g-------~~~A~said~ALwDl~gk~~g~Pl~~LLGg---~-r~ 136 (388)
T 3qld_A 68 LVHHLVPRFARWLRAASQDQDVDPRTVCEALRDVRG-------NRMSVAAIEMAVWDWYAARTGQPLVGLLGG---G-RD 136 (388)
T ss_dssp HHHTHHHHHHHHHTSGGGSSCCCGGGGGGGGTTCCS-------CHHHHHHHHHHHHHHHHHHHTCCHHHHTTC---C-CS
T ss_pred HHHHHHHHHhhhhcccCCCCccCHHHHHHHHHHccC-------cHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CC
Confidence 9888999999 9999999988887754321 257999999999999999999999999998 2 34
Q ss_pred ccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHH
Q 011677 186 TLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREG 265 (479)
Q Consensus 186 ~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~ 265 (479)
++|+ +..++.+ + ..+...+++.+...++|+.+| .|.| + +.+.+.
T Consensus 137 ~v~~--~~~~~~~-------~--------~~e~~~~~~~~~~~~G~~~~K----~Kv~-------------~--~~d~~~ 180 (388)
T 3qld_A 137 RVEV--SATLGMS-------E--------SLDVLIQSVDAAVEQGFRRVK----LKIA-------------P--GRDRAA 180 (388)
T ss_dssp EEEB--EEEECCC-------S--------CHHHHHHHHHHHHHTTCSEEE----EECB-------------T--TBSHHH
T ss_pred eEEE--eEEecCC-------C--------CHHHHHHHHHHHHHhCCCeEE----EEeC-------------c--HHHHHH
Confidence 5554 5443211 0 011123344444444555554 3422 1 234677
Q ss_pred HHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHH
Q 011677 266 LDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE 344 (479)
Q Consensus 266 l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~ 344 (479)
++.||+++. + .++ +|+| +.||.++++. + +.+++|+|.|||||++++|++
T Consensus 181 v~avR~~~~----~-~~l~vDaN-----------------------~~~~~~~A~~-~-~~l~~~~i~~iEeP~~~~d~~ 230 (388)
T 3qld_A 181 IKAVRLRYP----D-LAIAADAN-----------------------GSYRPEDAPV-L-RQLDAYDLQFIEQPLPEDDWF 230 (388)
T ss_dssp HHHHHHHCT----T-SEEEEECT-----------------------TCCCGGGHHH-H-HHGGGGCCSCEECCSCTTCHH
T ss_pred HHHHHHHCC----C-CeEEEECC-----------------------CCCChHHHHH-H-HHHhhCCCcEEECCCCcccHH
Confidence 877777662 2 345 9984 3567777774 4 558999999999999999999
Q ss_pred HHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCC
Q 011677 345 HTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGET 423 (479)
Q Consensus 345 g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get 423 (479)
++++|++++ +||++||+.. ++++++++++.+++|++ |+|++++||||++++++++|+++|++++++|+ .|+
T Consensus 231 ~~~~l~~~~~ipIa~dE~~~-~~~~~~~~~~~~a~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~-~es 302 (388)
T 3qld_A 231 DLAKLQASLRTPVCLDESVR-SVRELKLTARLGAARVL------NVKPGRLGGFGATLRALDVAGEAGMAAWVGGM-YET 302 (388)
T ss_dssp HHHHHHHHCSSCEEESTTCC-SHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEECCC-CCC
T ss_pred HHHHHHHhCCCCEEeCCCCC-CHHHHHHHHHcCCCCEE------EECchhhCCHHHHHHHHHHHHHCCCeEEecCc-cch
Confidence 999999999 9999999865 59999999999999999 99999999999999999999999999988765 477
Q ss_pred chhHHHHhHhhcCCCCc
Q 011677 424 EDSFIADLSVGLASGQI 440 (479)
Q Consensus 424 ~d~~~~dlAv~~~~~~i 440 (479)
..+..++++++....+.
T Consensus 303 ~i~~aa~~~laa~~~~~ 319 (388)
T 3qld_A 303 GVGRVHGLIAAALPLMR 319 (388)
T ss_dssp HHHHHHHHHHHTSTTBC
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 66666666665433433
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=342.97 Aligned_cols=271 Identities=15% Similarity=0.126 Sum_probs=208.4
Q ss_pred eEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh-c
Q 011677 63 TVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD-K 141 (479)
Q Consensus 63 ~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~-~ 141 (479)
+|+|+|+|++|++ |+||+.. + ..++..+++.|+|.|+|+||.++++||+.|.+.. +
T Consensus 71 ~v~V~v~td~G~~----------G~GE~~~----------g---~~~~~~v~~~l~p~LiG~d~~~~~~i~~~m~~~~~~ 127 (415)
T 2p3z_A 71 TLIVEVEAENRQT----------GFAVSTA----------G---EMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLGATMY 127 (415)
T ss_dssp EEEEEEEETTSCE----------EEEEEEC----------H---HHHHHHHHHTTHHHHTTSBTTCHHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCCE----------EEEEecC----------C---HHHHHHHHHHHHHHHCCCChhhHHHHHHHHHHhhhc
Confidence 6899999999984 9999742 1 2344457778999999999999999999998643 2
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHH
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFG 221 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ 221 (479)
+.++++++.+|++|||+||||+.||..|+|||+|||| ..+.+ +|+|++ |+ + .+
T Consensus 128 ~~g~~~~~~~A~said~ALwDl~ak~~g~Pl~~lLGG---~~~~~--vp~y~~--g~-------~-------------~~ 180 (415)
T 2p3z_A 128 YSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGG---AVRDE--IQFYAT--GA-------R-------------PD 180 (415)
T ss_dssp TSTTSSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CSSSE--EEEEEE--SS-------C-------------HH
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHcCCcHHHHcCC---CCCCc--eeeeec--CC-------C-------------HH
Confidence 2244567789999999999999999999999999998 33344 455654 22 0 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeec
Q 011677 222 EALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDL 300 (479)
Q Consensus 222 ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~ 300 (479)
++++ ++|+.+| .|.| .+++|++. +++.+.++++.||+++ |.+ ..| +|+|
T Consensus 181 ~~~~---~G~~~~K----iK~g-----~g~~~G~~-~~~~d~~~v~avrea~---G~~-~~L~vDaN------------- 230 (415)
T 2p3z_A 181 LAKE---MGFIGGK----MPTH-----WGPHDGDA-GIRKDAAMVADMREKC---GPD-FWLMLDCW------------- 230 (415)
T ss_dssp HHHH---HTCSEEE----EECC-----CCGGGHHH-HHHHHHHHHHHHHHHH---CSS-SEEEEECT-------------
T ss_pred HHHH---hCcceEE----Eecc-----cCcccccc-cHHHHHHHHHHHHHHh---CCC-CEEEEECC-------------
Confidence 3332 3476665 3432 23333332 2233456666666665 654 456 9984
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---hhhhcCCccccCHHHHHHHhcCCC
Q 011677 301 DFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---QQVVGDDLLMSNPKRIERATLIPL 377 (479)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~~a 377 (479)
+.||.+++++++.+ +++|+|.|||||++++|+++|++|++++ +||++||++. ++++++++++.+
T Consensus 231 ----------~~~~~~~Ai~~~~~-l~~~~i~~iEqPl~~~d~~~~~~l~~~~~~~ipIa~dE~~~-~~~~~~~~i~~~- 297 (415)
T 2p3z_A 231 ----------MSQDVNYATKLAHA-CAPFNLKWIEECLPPQQYEGYRELKRNAPAGMMVTSGEHHG-TLQSFRTLAETG- 297 (415)
T ss_dssp ----------TCCCHHHHHHHHHH-HGGGTCCEEECCSCTTCHHHHHHHHHHSCTTCEEEECTTCC-SHHHHHHHHHTT-
T ss_pred ----------CCCCHHHHHHHHHH-HhhcCCceEeCCCCcchHHHHHHHHHhcCCCCcEEcCCCCC-CHHHHHHHHHcC-
Confidence 35688999998765 8999999999999999999999999987 6999999875 599999999999
Q ss_pred CceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCC
Q 011677 378 AMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 378 ~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~ 437 (479)
+|++ +||++++||||++++++++|+++|+++|+ |++ ....+|||.++..
T Consensus 298 ~d~i------~ik~~~~GGitea~~ia~lA~~~gi~v~~-h~~----~~a~~hlaaa~p~ 346 (415)
T 2p3z_A 298 IDIM------QPDVGWCGGLTTLVEIAALAKSRGQLVVP-HGS----SVYSHHAVITFTN 346 (415)
T ss_dssp CSEE------CCCHHHHTCHHHHHHHHHHHHHTTCCBCC-CCC----HHHHHHHHTTCTT
T ss_pred CCEE------EeCccccCCHHHHHHHHHHHHHcCCEEEe-cCh----HHHHHHHHHhCCC
Confidence 9999 99999999999999999999999999865 754 2356788877643
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=338.75 Aligned_cols=295 Identities=16% Similarity=0.160 Sum_probs=226.8
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.+ +..+.|+|+|++|++ |+||+.+. +.|.+++...+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 65 (367)
T 3dg3_A 1 MKIVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIV----------GVAEAPPR-----PFTYGETQTGIVAV 65 (367)
T ss_dssp CBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCE----------EEEEECCC-----TTTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEEeeccCCeeccCeEEeeeeEEEEEEEECCCCE----------EEEeccCC-----CCccCCCHHHHHHH
Confidence 689999998883 1222 357999999999994 99998653 45778888888888
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
|++.++|.|+|+||.+.+++|+.|.+.. + ..+|++|||+||||+.||..|+|||++||| .+.++|+ +
T Consensus 66 i~~~l~~~l~G~d~~~~~~~~~~l~~~~-----~--~~~a~~aid~AlwDl~gk~~g~Pl~~llGg----~~~~v~~--~ 132 (367)
T 3dg3_A 66 IEQYFAPALIGLTLTEREVAHTRMARTV-----G--NPTAKAAIDMAMWDALGQSLRLSVSEMLGG----YTDRMRV--S 132 (367)
T ss_dssp HHHTHHHHHTTCBTTCHHHHHHHHTTSC-----S--CHHHHHHHHHHHHHHHHHHHTCBHHHHHTC----CCSEEEE--E
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHhcc-----C--chHHHHHHHHHHHHHHHHHcCCcHHHHhCC----CCCeEEE--E
Confidence 8888999999999999999999987541 1 257999999999999999999999999998 2345544 5
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHH-HHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSE-TYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e-~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
..++.+ + .+...+++.+...+ +|+.+| .|.|. .+ .+.+.+.++.||+
T Consensus 133 ~~~~~~-------~---------~~~~~~~a~~~~~~~G~~~~K----~K~g~-----------~~-~~~d~~~v~avR~ 180 (367)
T 3dg3_A 133 HMLGFD-------D---------PVKMVAEAERIRETYGINTFK----VKVGR-----------RP-VQLDTAVVRALRE 180 (367)
T ss_dssp EEEESS-------C---------HHHHHHHHHHHHHHHCCCEEE----EECCC-----------SS-THHHHHHHHHHHH
T ss_pred EEecCC-------C---------HHHHHHHHHHHHHhcCccEEE----EeeCC-----------Ch-hhhHHHHHHHHHH
Confidence 443321 1 11234445455445 565555 45431 11 1145677777777
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
++ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|+
T Consensus 181 a~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~ 232 (367)
T 3dg3_A 181 RF---GDA-IELYVDGN-----------------------RGWSAAESLRAM-REMADLDLLFAEELCPADDVLSRRRLV 232 (367)
T ss_dssp HH---GGG-SEEEEECT-----------------------TCSCHHHHHHHH-HHTTTSCCSCEESCSCTTSHHHHHHHH
T ss_pred Hh---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHHHhCCCEEECCCCcccHHHHHHHH
Confidence 77 433 345 8883 367889999875 558999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hH
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SF 427 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~ 427 (479)
+++ +||++||+.. ++++++++++.+++|++ ++|++++ |||++++++++|+++|++++++|+ .|+.. ++
T Consensus 233 ~~~~iPIa~dE~~~-~~~~~~~~i~~~~~d~v------~~k~~~~-Git~~~~ia~~A~~~gi~~~~~~~-~es~i~~aa 303 (367)
T 3dg3_A 233 GQLDMPFIADESVP-TPADVTREVLGGSATAI------SIKTART-GFTGSTRVHHLAEGLGLDMVMGNQ-IDGQIGTAC 303 (367)
T ss_dssp HHCSSCEEECTTCS-SHHHHHHHHHHTSCSEE------EECHHHH-TTHHHHHHHHHHHHHTCEEEECCS-SCCHHHHHH
T ss_pred HhCCCCEEecCCcC-CHHHHHHHHHcCCCCEE------Eeehhhh-hHHHHHHHHHHHHHcCCeEEECCc-CCcHHHHHH
Confidence 999 9999999864 59999999999999999 9999999 999999999999999999988765 45544 45
Q ss_pred HHHhHhhcC
Q 011677 428 IADLSVGLA 436 (479)
Q Consensus 428 ~~dlAv~~~ 436 (479)
.+|||.++.
T Consensus 304 ~~hlaaa~~ 312 (367)
T 3dg3_A 304 TVSFGTAFE 312 (367)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHHhCC
Confidence 667766543
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=343.38 Aligned_cols=296 Identities=16% Similarity=0.158 Sum_probs=224.9
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.+ +..+.|+|+|++|++ |+||+.+. +.|.+++...+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 65 (356)
T 3ro6_B 1 MKIADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLL----------GLGAASPE-----RHVTGETLEACHAA 65 (356)
T ss_dssp CBEEEEEEEEEEEEBC----------CEEEEEEEEEEETTSCE----------EEEEECCC-----HHHHCCCHHHHHHH
T ss_pred CEEEEEEEEEEEecccCCEEecCeEEEeeeEEEEEEEECCCCE----------EEecccCC-----CCcCcCCHHHHHHH
Confidence 699999998873 2222 347999999999984 99998764 24567778888878
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+++.++|.|+|+||.+.+++|+.|.+... + ...|++|||+||||+.||..|+|||++||| . +.++|+ +
T Consensus 66 l~~~l~~~l~G~~~~~~~~~~~~l~~~~~----~--~~~a~~aid~AlwDl~gk~~g~Pl~~llGg---~-~~~v~~--~ 133 (356)
T 3ro6_B 66 LDHDRLGWLMGRDIRTLPRLCRELAERLP----A--APAARAALDMALHDLVAQCLGLPLVEILGR---A-HDSLPT--S 133 (356)
T ss_dssp HCGGGCTTTTTCBGGGHHHHHHHHHHHCT----T--CHHHHHHHHHHHHHHHHHHHTSBHHHHTCC---C-CSCEEB--C
T ss_pred HHHHhHHHhcCCCccCHHHHHHHHHHhhc----c--chhHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CCceee--e
Confidence 88889999999999999999999875321 1 157999999999999999999999999998 3 345554 4
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEA 272 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~a 272 (479)
..++.+ + .+...+++.+...++|+.+| .|.| . +.+.+.+.++.||++
T Consensus 134 ~~~~~~-------~---------~~~~~~~a~~~~~~G~~~~K----~K~G-------~------~~~~d~~~v~avR~~ 180 (356)
T 3ro6_B 134 VTIGIK-------P---------VEETLAEAREHLALGFRVLK----VKLC-------G------DEEQDFERLRRLHET 180 (356)
T ss_dssp EEECSC-------C---------HHHHHHHHHHHHHTTCCEEE----EECC-------S------CHHHHHHHHHHHHHH
T ss_pred EEEcCC-------C---------HHHHHHHHHHHHHcCCCEEE----EEeC-------C------CHHHHHHHHHHHHHH
Confidence 333211 0 11233444444444565554 4433 1 223456666666666
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|++
T Consensus 181 ~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~~ 232 (356)
T 3ro6_B 181 L---AGR-AVVRVDPN-----------------------QSYDRDGLLRLD-RLVQELGIEFIEQPFPAGRTDWLRALPK 232 (356)
T ss_dssp H---TTS-SEEEEECT-----------------------TCCCHHHHHHHH-HHHHHTTCCCEECCSCTTCHHHHHTSCH
T ss_pred h---CCC-CEEEEeCC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEECCCCCCcHHHHHHHHh
Confidence 6 644 456 8883 367889999875 5589999999999999999999999999
Q ss_pred hh-hhhhcCCccccCHHHHHHHhcCC-CCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hH
Q 011677 352 IC-QQVVGDDLLMSNPKRIERATLIP-LAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SF 427 (479)
Q Consensus 352 ~~-~~I~gde~~~t~~~~~~~~i~~~-a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~ 427 (479)
++ +||++||+.. ++++++++++.+ ++|++ ++|++++||||++++++++|+++|+++++++ +.|+.. ++
T Consensus 233 ~~~iPIa~dE~~~-~~~~~~~~~~~~~~~d~v------~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~-~~es~i~~aa 304 (356)
T 3ro6_B 233 AIRRRIAADESLL-GPADAFALAAPPAACGIF------NIKLMKCGGLAPARRIATIAETAGIDLMWGC-MDESRISIAA 304 (356)
T ss_dssp HHHHTEEESTTCC-SHHHHHHHHSSSCSCSEE------EECHHHHCSHHHHHHHHHHHHHHTCEEEECC-CSCCHHHHHH
T ss_pred cCCCCEEeCCcCC-CHHHHHHHHhcCCcCCEE------EEcccccCCHHHHHHHHHHHHHcCCEEEecC-CcccHHHHHH
Confidence 99 9999999764 599999999999 99999 9999999999999999999999999998755 456654 45
Q ss_pred HHHhHhhcC
Q 011677 428 IADLSVGLA 436 (479)
Q Consensus 428 ~~dlAv~~~ 436 (479)
.+|||.++.
T Consensus 305 ~~hlaaa~p 313 (356)
T 3ro6_B 305 ALHAALACP 313 (356)
T ss_dssp HHHHHHTCT
T ss_pred HHHHHhcCC
Confidence 667776653
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-40 Score=338.28 Aligned_cols=295 Identities=13% Similarity=0.120 Sum_probs=223.0
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. .+.+ ++++.|+|+|++|++ |+||+.. ++ ..+..
T Consensus 3 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~g----------~~--~~~~~ 60 (382)
T 2gdq_A 3 LVKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGID----------GWGECVD----------WL--PALHV 60 (382)
T ss_dssp CCBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECS----------CH--HHHHH
T ss_pred CCEEEEEEEEEEecccCcccccccceeccCcEEEEEEEECCCCE----------EEEeecC----------ch--HHHHH
Confidence 4799999998873 2332 457999999999984 9999751 11 24566
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.|++.++|.|+|+||.+++.+|+.|.+.. .+|++|||+||||+.||..|+|||++||| ..+. ++|+
T Consensus 61 ~i~~~l~~~l~G~d~~~~~~~~~~l~~~~---------~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~~~~--~vp~ 126 (382)
T 2gdq_A 61 GFTKRIIPFLLGKQAGSRLSLVRTIQKWH---------QRAASAVSMALTEIAAKAADCSVCELWGG---RYRE--EIPV 126 (382)
T ss_dssp HHHHTHHHHHTTSBTTCHHHHHHHHHHHC---------HHHHHHHHHHHHHHHHHHTTSBHHHHTTC---CSCS--EEEE
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHcCCcHHHHcCC---CCCC--ceeE
Confidence 67777999999999999999999997531 57999999999999999999999999998 3233 4555
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
|+.+ |+.+ ++.+++ | ...+++.+...++|+.+| .|.| . .+.+.+.+.++.||+
T Consensus 127 ~~~~-g~~~-~~~~~~-e--------~~~~~a~~~~~~Gf~~vK----ik~g-------~-----~~~~~d~e~v~avR~ 179 (382)
T 2gdq_A 127 YASF-QSYS-DSPQWI-S--------RSVSNVEAQLKKGFEQIK----VKIG-------G-----TSFKEDVRHINALQH 179 (382)
T ss_dssp EEEC-CCBC-SSTTHH-H--------HHHHHHHHHHTTTCCEEE----EECS-------S-----SCHHHHHHHHHHHHH
T ss_pred EEEe-cccC-CCcccH-H--------HHHHHHHHHHHcCCCEEE----EcCC-------C-----CCHHHHHHHHHHHHH
Confidence 6654 2211 111111 1 123344444444555544 3322 1 123345666766766
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhC-CceeeecCCCccCHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADY-PIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~-~i~~iEdP~~~~D~~g~~~L 349 (479)
++ |.+ ..+ +|+| +.||.++++++.. .+++| ++.|||||++++|++++++|
T Consensus 180 a~---G~d-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~~~i~~iEqP~~~~d~~~~~~l 231 (382)
T 2gdq_A 180 TA---GSS-ITMILDAN-----------------------QSYDAAAAFKWER-YFSEWTNIGWLEEPLPFDQPQDYAML 231 (382)
T ss_dssp HH---CTT-SEEEEECT-----------------------TCCCHHHHHTTHH-HHTTCSCEEEEECCSCSSCHHHHHHH
T ss_pred hh---CCC-CEEEEECC-----------------------CCCCHHHHHHHHH-HHhhccCCeEEECCCCcccHHHHHHH
Confidence 66 644 456 8883 3578899998764 58999 99999999999999999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHH
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFI 428 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~ 428 (479)
++++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|+++++ | +.|+..+.+
T Consensus 232 ~~~~~iPIa~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~-~-~~es~i~~~ 302 (382)
T 2gdq_A 232 RSRLSVPVAGGENMK-GPAQYVPLLSQRCLDII------QPDVMHVNGIDEFRDCLQLARYFGVRASA-H-AYDGSLSRL 302 (382)
T ss_dssp HTTCSSCEEECTTCC-SHHHHHHHHHTTCCSEE------CCCTTTTTHHHHHHHHHHHHHHHTCEECC-C-CSSCSHHHH
T ss_pred HhhCCCCEEecCCcC-CHHHHHHHHHcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCEEee-c-CCCcHHHHH
Confidence 9999 9999999875 59999999999999999 99999999999999999999999999765 5 678888877
Q ss_pred HHhHhhcCCC
Q 011677 429 ADLSVGLASG 438 (479)
Q Consensus 429 ~dlAv~~~~~ 438 (479)
++++++...+
T Consensus 303 a~l~laa~~~ 312 (382)
T 2gdq_A 303 YALFAQACLP 312 (382)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHhCc
Confidence 7777665444
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=335.58 Aligned_cols=296 Identities=18% Similarity=0.144 Sum_probs=222.3
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+.+.+. ++.+ +++++|+|+|++|++ |+||+.+. .+++. ++..
T Consensus 3 ~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~----------G~Ge~~~~--------~~~~~-~~~~ 63 (359)
T 1mdl_A 3 EVLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVV----------GHSYLFAY--------TPVAL-KSLK 63 (359)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEEECS--------SGGGH-HHHH
T ss_pred CCEEEEEEEEEEEcCCCCCccccccccccccEEEEEEEeCCCCE----------EEEEeecC--------CCchH-HHHH
Confidence 5799999998772 3333 246899999999984 99998653 24445 6677
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.|++.++|.|+|+||.+++.+ +.|.+......+.++..+|++|||+||||+.||..|+|||++||| . +.+ +|+
T Consensus 64 ~i~~~l~~~l~g~d~~~~~~~-~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~~k~~g~Pl~~llGg---~-~~~--vp~ 136 (359)
T 1mdl_A 64 QLLDDMAAMIVNEPLAPVSLE-AMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGA---N-ARP--VQA 136 (359)
T ss_dssp HHHHHHHHHHTTSBSCHHHHH-HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTC---C-CCC--EEE
T ss_pred HHHHHHHHHHCCCCccchHHH-HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhhhcCCcHHHHhCC---C-CCC--eee
Confidence 788889999999999999999 888653211111235678999999999999999999999999998 3 344 455
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKE 271 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ 271 (479)
|+. +|. .+.++ ..+++.+...++|+.+| .|.| . ++.+.+.+.++.||+
T Consensus 137 ~~~--~g~-----~~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~-----~~~~~~~e~v~avr~ 184 (359)
T 1mdl_A 137 YDS--HSL-----DGVKL---------ATERAVTAAELGFRAVK----TRIG-------Y-----PALDQDLAVVRSIRQ 184 (359)
T ss_dssp EEE--CCS-----CHHHH---------HHHHHHHHHHTTCSEEE----EECC-------C-----SSHHHHHHHHHHHHH
T ss_pred eee--cCC-----CCHHH---------HHHHHHHHHHcCCCEEE----EecC-------C-----CCHHHHHHHHHHHHH
Confidence 654 221 11221 23344444444555444 3322 1 122334566666666
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVL 350 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~ 350 (479)
++ |.+ ..+ +|++ +.||.+++++++. .+++|++.|||||++++|++++++|+
T Consensus 185 a~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~~i~~iE~P~~~~~~~~~~~l~ 236 (359)
T 1mdl_A 185 AV---GDD-FGIMVDYN-----------------------QSLDVPAAIKRSQ-ALQQEGVTWIEEPTLQHDYEGHQRIQ 236 (359)
T ss_dssp HH---CSS-SEEEEECT-----------------------TCSCHHHHHHHHH-HHHHHTCSCEECCSCTTCHHHHHHHH
T ss_pred Hh---CCC-CEEEEECC-----------------------CCCCHHHHHHHHH-HHHHhCCCeEECCCChhhHHHHHHHH
Confidence 66 644 345 8883 3578899998765 48999999999999999999999999
Q ss_pred hhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q 011677 351 QIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIA 429 (479)
Q Consensus 351 ~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~ 429 (479)
+++ +||++||... ++++++++++.+++|++ ++|++++||+|++++++++|+++|+++|++ ++++ +.+
T Consensus 237 ~~~~iPI~~de~~~-~~~~~~~~i~~~~~d~v------~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~-~~~~----a~~ 304 (359)
T 1mdl_A 237 SKLNVPVQMGENWL-GPEEMFKALSIGACRLA------MPDAMKIGGVTGWIRASALAQQFGIPMSSH-LFQE----ISA 304 (359)
T ss_dssp HTCSSCEEECTTCC-SHHHHHHHHHTTCCSEE------CCBTTTTTHHHHHHHHHHHHHHTTCCBCCB-SCHH----HHH
T ss_pred HhCCCCEEeCCCCC-CHHHHHHHHHcCCCCEE------eecchhhCCHHHHHHHHHHHHHcCCeEeec-cHHH----HHH
Confidence 999 9999999865 59999999999999999 999999999999999999999999998664 4432 788
Q ss_pred HhHhhcCC
Q 011677 430 DLSVGLAS 437 (479)
Q Consensus 430 dlAv~~~~ 437 (479)
|+|+++..
T Consensus 305 ~laaa~~~ 312 (359)
T 1mdl_A 305 HLLAATPT 312 (359)
T ss_dssp HHHHTCTT
T ss_pred HHHHhCCC
Confidence 99888753
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-40 Score=340.40 Aligned_cols=322 Identities=14% Similarity=0.084 Sum_probs=214.9
Q ss_pred ceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC
Q 011677 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM 124 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~ 124 (479)
|+|++|+.+.+- .....+.|+|+|++|+ +|+||+. +.++++ ...+.+.++|.|+|+
T Consensus 1 MkIt~ie~~~~~--~~~~~~~V~v~td~G~----------~G~GE~~---------~~~~~~---~~~i~~~l~p~liG~ 56 (400)
T 4dxk_A 1 MKITKLETVRVA--ERTNLLWVLVHTDEGI----------TGLGETF---------FGAETV---ETYVHEYIAPRVIGR 56 (400)
T ss_dssp CCEEEEEEEEET--TSTTEEEEEEEETTSC----------CEEEEEE---------SCHHHH---HHHHHHTHHHHHTTS
T ss_pred CeEEEEEEEEEC--CCCCEEEEEEEECCCC----------EEEEcCC---------CCccHH---HHHHHHHHHHHhCCC
Confidence 699999998873 3456799999999999 5999942 233333 233455699999999
Q ss_pred CCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEe-ecCCccCCC
Q 011677 125 DPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTV-ISGGKHAGN 203 (479)
Q Consensus 125 d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~-i~GG~~~~~ 203 (479)
||.+++++|+.|..+.+. ..+++..+|++|||+||||+.||.+|+|||+|||| ..+.++|+..... +.|..+...
T Consensus 57 dp~~~~~~~~~~~~~~~~-~~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~~yas~~~~~~~~~~~~ 132 (400)
T 4dxk_A 57 DPLQIDLLAQDLVGYLGF-RSSGAEVRGNSAFDIALWDIFGKATNQPIAQLLGG---FSRREIRTYNTCAGTEYIKKATG 132 (400)
T ss_dssp CTTCHHHHHHHHCCSSSC-SSCSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CSCSCEEEEBC------------
T ss_pred CcchHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCC---CccCceeEEEecccccccccccc
Confidence 999999999999222111 22345678999999999999999999999999998 3445666543111 111111000
Q ss_pred --------cccccceeeccCCCCc-HHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCC--CCCchHHHHHHHHHH
Q 011677 204 --------NLAIQDIMILPIGASS-FGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAP--NISSIREGLDLVKEA 272 (479)
Q Consensus 204 --------~l~~~e~~i~p~~~~~-~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~--~~~~~~~~l~~v~~a 272 (479)
.....+-+. |-.... .+.+.+...++|+++| .|.|... ..++.+++.+ +++.+.+.++.||++
T Consensus 133 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~a~~~~~~G~~~~K----ik~g~~~-~~~~~~g~~~~~~~~~d~~~v~avR~a 206 (400)
T 4dxk_A 133 QQTANYGLSGGKDYDDL-NGFLHRADELAHSLLEDGITAMK----IWPFDAA-AEKTRGQYISMPDLKSALEPFEKIRKA 206 (400)
T ss_dssp -----------------------CHHHHHHHHHHTTCCEEE----ECTTHHH-HHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhc-ccccccHHHHHHHHHHhCCCEEE----EcCCCcc-ccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 000000000 000001 1222233344555554 3322000 0000011111 122345566666666
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+ |.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|++
T Consensus 207 ~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~i~~iEeP~~~~~~~~~~~l~~ 258 (400)
T 4dxk_A 207 V---GDK-MDIMVEFH-----------------------SMWQLLPAMQIA-KALTPYQTFWHEDPIKMDSLSSLTRYAA 258 (400)
T ss_dssp H---GGG-SEEEEECT-----------------------TCBCHHHHHHHH-HHTGGGCCSEEECCBCTTSGGGHHHHHH
T ss_pred c---CCC-ceEEEECC-----------------------CCCCHHHHHHHH-HHHhhcCCCEEEcCCCcccHHHHHHHHH
Confidence 6 533 345 8883 367889999875 5589999999999999999999999999
Q ss_pred hh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCc--hhHH
Q 011677 352 IC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETE--DSFI 428 (479)
Q Consensus 352 ~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~--d~~~ 428 (479)
++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|+++++ |+++ +. .++.
T Consensus 259 ~~~iPIa~dE~~~-~~~~~~~~l~~~a~d~v------~~d~~~~GGit~~~kia~~A~~~gi~~~~-h~~~-s~i~~aa~ 329 (400)
T 4dxk_A 259 VSPAPISASETLG-SRWAFRDLLETGAAGVV------MLDISWCGGLSEARKIASMAEAWHLPVAP-HXCT-GPVVLCAS 329 (400)
T ss_dssp HCSSCEEECTTCC-HHHHHHHHHHTTCCCEE------EECTTTTTHHHHHHHHHHHHHHTTCCEEE-C-CC-CHHHHHHH
T ss_pred hCCCCEEecCCcC-CHHHHHHHHHcCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEEEe-cCCC-ChHHHHHH
Confidence 99 9999999864 59999999999999999 99999999999999999999999999855 6543 43 3566
Q ss_pred HHhHhhcCC
Q 011677 429 ADLSVGLAS 437 (479)
Q Consensus 429 ~dlAv~~~~ 437 (479)
+|||.++.+
T Consensus 330 ~hlaaa~p~ 338 (400)
T 4dxk_A 330 THLSLNAPN 338 (400)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCCC
Confidence 777777643
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-40 Score=343.05 Aligned_cols=301 Identities=15% Similarity=0.149 Sum_probs=215.4
Q ss_pred CceeeEEEEEEEecC----------C----CCceEEEEEEeCC--CceeeecCCCCCCCceeeeeeccCCCCccccccHH
Q 011677 44 PSVITKIKARQILDS----------R----GIPTVEVDLFTHK--GMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVN 107 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds----------~----g~~~v~V~v~t~~--G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~ 107 (479)
+|+|++|+++.+.-+ . ....+.|+|+|++ |+ +|+||+... +.+..
T Consensus 4 ~mkI~~i~~~~v~~p~~~~~~~s~~~~~~~~~~~~~V~i~Td~~dG~----------~G~Ge~~~~---------g~~~~ 64 (441)
T 4a35_A 4 RGRISRLSVRDVRFPTSLGGHGADAMHTDPDYSAAYVVIETDAEDGI----------KGCGITFTL---------GKGTE 64 (441)
T ss_dssp CCBEEEEEEEEEECCGGGTTCCCCSSCSSCCCEEEEEEEEESSCSCC----------CEEEEEEEC---------STTHH
T ss_pred CCEEEEEEEEEEEecCCCCCCCccceeccCcceEEEEEEEECCCCCC----------EEEEeeeCC---------CCChH
Confidence 579999999998422 1 1237999999998 98 599998653 22334
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHh-hhc------cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhccc
Q 011677 108 RAVKNINERISEALVGMDPILQSQIDQAMID-LDK------TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180 (479)
Q Consensus 108 ~av~~i~~~l~p~LiG~d~~~~~~id~~l~~-~~~------~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~ 180 (479)
.+...+ +.++|.|+|+||.+.+++|+.|++ +.. .+..+++...|++|||+||||++||.+|+|||+||||.
T Consensus 65 ~~~~~i-~~l~~~liG~d~~~i~~~~~~~~~~l~~~~~~~~~g~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~- 142 (441)
T 4a35_A 65 VVVCAV-NALAHHVLNKDLKDIVGDFRGFYRQLTSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLVDM- 142 (441)
T ss_dssp HHHHHH-HHHGGGTTTCBHHHHHTTHHHHHHHHHSCTTGGGGCSSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHS-
T ss_pred HHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHhhccceeecCCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCC-
Confidence 444445 569999999999998765555543 211 11113355789999999999999999999999999983
Q ss_pred CCCCcccc---------------------------------------cceEEeecCCccCCCcccccceeeccCCCCcHH
Q 011677 181 GKTNLTLP---------------------------------------VPAFTVISGGKHAGNNLAIQDIMILPIGASSFG 221 (479)
Q Consensus 181 ~~~~~~~P---------------------------------------vp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ 221 (479)
.+.+++ +|.|++. +|+.. .+. +...+
T Consensus 143 --~r~~i~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~y~~~-~g~~~---~~~---------e~~~~ 207 (441)
T 4a35_A 143 --DPRMLVSCIDFRYITDVLTEEDALEILQKGQIGKKEREKQMLAQGYPAYTTS-CAWLG---YSD---------DTLKQ 207 (441)
T ss_dssp --CHHHHHTTCCCTTTTTTCCHHHHHHHHHHTTTTHHHHHHHHHHHCEEEEECT-TCCTT---CCH---------HHHHH
T ss_pred --CcccceecccccccccccchhhhhhhhhhcccccchhhhhhcccCcceEEec-cccCC---CCH---------HHHHH
Confidence 223332 5667642 22211 111 11233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeec
Q 011677 222 EALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDL 300 (479)
Q Consensus 222 ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~ 300 (479)
++.+...++|+++| .|.| . +.+.+.++++.||+++ |.+ ..+ +|+|
T Consensus 208 ~a~~~~~~Gf~~~K----lKvG-------~------~~~~d~~~v~avR~a~---G~~-~~l~vDaN------------- 253 (441)
T 4a35_A 208 LCAQALKDGWTRFK----VKVG-------A------DLQDDMRRCQIIRDMI---GPE-KTLMMDAN------------- 253 (441)
T ss_dssp HHHHHHHTTCCEEE----EECS-------S------CHHHHHHHHHHHHHHH---CTT-SEEEEECT-------------
T ss_pred HHHHHHHCCCCEEE----EcCC-------C------CHHHHHHHHHHHHHHh---CCC-CeEEEECC-------------
Confidence 44444445555554 3432 1 2334556666666666 654 456 8983
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhh---h-hhhhcCCccccCHHHHHHHhcCC
Q 011677 301 DFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQI---C-QQVVGDDLLMSNPKRIERATLIP 376 (479)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~---~-~~I~gde~~~t~~~~~~~~i~~~ 376 (479)
+.||.++++++. +.+++|++.|||||++++|++++++|+++ + +||++||... ++++++++++.+
T Consensus 254 ----------~~~~~~~A~~~~-~~L~~~~~~~iEeP~~~~d~~~~~~l~~~l~~~~iPIa~gE~~~-~~~~~~~~l~~~ 321 (441)
T 4a35_A 254 ----------QRWDVPEAVEWM-SKLAKFKPLWIEEPTSPDDILGHATISKALVPLGIGIATGEQCH-NRVIFKQLLQAK 321 (441)
T ss_dssp ----------TCCCHHHHHHHH-HHHGGGCCSEEECCSCTTCHHHHHHHHHHHGGGTCEEEECTTCC-SHHHHHHHHHTT
T ss_pred ----------CCCCHHHHHHHH-HhhcccCccEEeCCCCcccHHHHHHHHHhccCCCCCEEeCCccc-cHHHHHHHHHcC
Confidence 367889999875 45899999999999999999999999997 7 9999999865 599999999999
Q ss_pred CCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHh
Q 011677 377 LAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSV 433 (479)
Q Consensus 377 a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv 433 (479)
++|++ |+|++++||||++++++++|+++|+++ .+|.++-.-.+..+||++
T Consensus 322 a~div------~~d~~~~GGit~~~kia~lA~~~gv~v-~~H~~~ig~aa~~~hl~~ 371 (441)
T 4a35_A 322 ALQFL------QIDSCRLGSVNENLSVLLMAKKFEIPV-CPHAGGVGLCELVQHLII 371 (441)
T ss_dssp CCSEE------CCCTTTSSHHHHHHHHHHHHHHTTCCB-CCCCCTTTHHHHHHHHHH
T ss_pred CCCEE------EECccccCCHHHHHHHHHHHHHcCCEE-EEeCChHHHHHHHHHHhh
Confidence 99999 999999999999999999999999996 678653221123456653
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=337.18 Aligned_cols=297 Identities=16% Similarity=0.157 Sum_probs=222.4
Q ss_pred CceeeEEEEEEEecC---------CC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHH
Q 011677 44 PSVITKIKARQILDS---------RG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAV 110 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds---------~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av 110 (479)
+|+|++|+.+.+.-. .| ...+.|+|+|++|++ |+||+.++. +.|++++...+.
T Consensus 22 ~MkI~~i~~~~~~~pl~~~p~~~s~g~~~~~~~~~V~i~td~G~~----------G~GE~~~~~----~~~~~~~~~~~~ 87 (391)
T 4e8g_A 22 SMKIAEIHVYAHDLPVKDGPYTIASSTVWSLQTTLVKIVADSGLA----------GWGETCPVG----PTYAPSHALGAR 87 (391)
T ss_dssp -CCEEEEEEEEEEC---------------CCEEEEEEEEETTSCE----------EEEEECCSS----TTTSSCCHHHHH
T ss_pred CCEEEEEEEEEEeeeCCCCCcccccceeeeeeEEEEEEEECCCCE----------EEecCcCCC----CccCCccHHHHH
Confidence 479999999888422 12 356999999999994 999987641 357766677777
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccc
Q 011677 111 KNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVP 190 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp 190 (479)
..+++ ++|.|+|+||.+.+.+|+.|.... .+. .+|++|||+||||+.||..|+|||++||| ..+.++|+
T Consensus 88 ~~l~~-l~p~l~G~d~~~~~~~~~~l~~~~----~g~--~~A~said~ALwDl~gK~~g~Pl~~LLGg---~~r~~v~~- 156 (391)
T 4e8g_A 88 AALAE-MAPGLIGANPLQPLVLRRRMDGLL----CGH--NYAKAAIDIAAYDLMGKHYGVRVADLLGG---VAAERVPS- 156 (391)
T ss_dssp HHHHH-HGGGGTTCCTTCHHHHHHHHHTTC----SSC--HHHHHHHHHHHHHHHHHHHTCBGGGGTTC---CSCSEEEC-
T ss_pred HHHHH-HHHHHCCCCcCCHHHHHHHHHHHh----cCc--HHHHHHHHHHHHHHHHHHcCChHHHhcCC---CCCCcEEE-
Confidence 77765 999999999999999999997532 111 47999999999999999999999999998 33445555
Q ss_pred eEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 191 AFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 191 ~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
|..++.+ +. +...+++.+...++|+.+| .|.|. .+.+.+.+.++.||
T Consensus 157 -y~s~~~~-------~~---------e~~~~~a~~~~~~G~~~~K----lKvg~------------~~~~~d~~~v~avR 203 (391)
T 4e8g_A 157 -YYATGIG-------QP---------DEIARIAAEKVAEGFPRLQ----IKIGG------------RPVEIDIETVRKVW 203 (391)
T ss_dssp -CEEECSC-------CH---------HHHHHHHHHHHHTTCSEEE----EECCS------------SCHHHHHHHHHHHH
T ss_pred -eEEcCCC-------CH---------HHHHHHHHHHHHcCCcEEE----EcCCC------------CCHHHHHHHHHHHH
Confidence 4443221 11 1223344444445565554 45331 11234455555555
Q ss_pred HHHHhcC-CCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHH
Q 011677 271 EAINRTG-IPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 271 ~ai~~~g-~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~ 348 (479)
+++ | .+ ..+ +|+| +.||.++++++. +.+++|++ |||||+ +|++++++
T Consensus 204 ~a~---gg~~-~~L~vDaN-----------------------~~w~~~~A~~~~-~~L~~~~i-~iEeP~--~~~~~~~~ 252 (391)
T 4e8g_A 204 ERI---RGTG-TRLAVDGN-----------------------RSLPSRDALRLS-RECPEIPF-VLEQPC--NTLEEIAA 252 (391)
T ss_dssp HHH---TTTT-CEEEEECT-----------------------TCCCHHHHHHHH-HHCTTSCE-EEESCS--SSHHHHHH
T ss_pred HHh---CCCC-CeEEEeCC-----------------------CCCCHHHHHHHH-HHHhhcCe-EEecCC--ccHHHHHH
Confidence 555 5 55 456 9983 367889999875 45799999 999996 59999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED-- 425 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d-- 425 (479)
|++++ +||++||+.. ++++++++++.+++|++ |+|++++||||++++++++|+++|++++++|+. |+..
T Consensus 253 l~~~~~iPIa~dE~~~-~~~~~~~~~~~~a~d~v------~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~-es~i~~ 324 (391)
T 4e8g_A 253 IRGRVQHGIYLDESGE-DLSTVIRAAGQGLCDGF------GMKLTRIGGLQQMAAFRDICEARALPHSCDDAW-GGDIIA 324 (391)
T ss_dssp HGGGCCSCEEESTTCC-SHHHHHHHHHTTCCSEE------EEEHHHHTSHHHHHHHHHHHHHTTCCEEEECSS-CSHHHH
T ss_pred HHhhCCCCEEeCCCCC-CHHHHHHHHHcCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCeEEeCCcC-CCHHHH
Confidence 99999 9999999865 59999999999999999 999999999999999999999999999887765 5544
Q ss_pred hHHHHhHhhcCC
Q 011677 426 SFIADLSVGLAS 437 (479)
Q Consensus 426 ~~~~dlAv~~~~ 437 (479)
++.+|||.++.+
T Consensus 325 aa~~hlaaa~p~ 336 (391)
T 4e8g_A 325 AACTHIGATVQP 336 (391)
T ss_dssp HHHHHHHTTSCG
T ss_pred HHHHHHHHhCCC
Confidence 456677776543
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-40 Score=336.87 Aligned_cols=295 Identities=16% Similarity=0.167 Sum_probs=221.6
Q ss_pred ceeeEEEEEEEe--------cCCCC------ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHH
Q 011677 45 SVITKIKARQIL--------DSRGI------PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAV 110 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g~------~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av 110 (479)
|+|++|+.+.+. .+.+. ++++|+|+|++|+ +|+||+.++ + +.|.++++.++.
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~V~v~td~G~----------~G~GE~~~~---~-~~~~~~~~~~~~ 68 (378)
T 2qdd_A 3 LRITRLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGV----------TGWGEGCPW---G-HSYLPAHGPGLR 68 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECCC--CEEEEEEEEEEEEEETTSC----------EEEEEECCS---T-TTSSSCCHHHHH
T ss_pred CEEEEEEEEEEeccccCceecccCcccccccceEEEEEEECCCC----------EEEEEEecC---C-CCcCCCCHHHHH
Confidence 689999998772 33342 4699999999998 499998765 1 468888888888
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccc
Q 011677 111 KNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVP 190 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp 190 (479)
..++ .++|.|+|+||.+++++|+.|... . ++ ..+|++|||+||||+.||..|+|||++||| ..+.+ +|
T Consensus 69 ~~l~-~l~~~l~g~d~~~~~~~~~~l~~~---~-~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~~~~~--v~ 136 (378)
T 2qdd_A 69 AGIA-TLAPHLLGLDPRSLDHVNRVMDLQ---L-PG--HSYVKSPIDMACWDILGQVAGLPLWQLLGG---EAATP--VP 136 (378)
T ss_dssp HHHH-HHHHHHTTCCTTCHHHHHHHHHHH---S-CS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---SSCCC--EE
T ss_pred HHHH-HHHHHHCCCCccCHHHHHHHHHHh---h-cc--chHHHHHHHHHHHHHHHHHcCCcHHHHhCC---CCCCC--Cc
Confidence 8888 899999999999999999998432 1 22 368999999999999999999999999998 32344 44
Q ss_pred eEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 191 AFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 191 ~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
+|.+++.+ +.+ ...+++.+...++|+.+| .|.| . ++.+.+.+.++.||
T Consensus 137 ~~~~~~~~-------~~e---------~~~~~a~~~~~~Gf~~iK----ik~g-------~-----~~~~~~~e~v~avr 184 (378)
T 2qdd_A 137 INSSISTG-------TPD---------QMLGLIAEAAAQGYRTHS----AKIG-------G-----SDPAQDIARIEAIS 184 (378)
T ss_dssp BEEEECSC-------CHH---------HHHHHHHHHHHHTCCEEE----EECC-------S-----SCHHHHHHHHHHHH
T ss_pred eEEEecCC-------CHH---------HHHHHHHHHHHHhhhhee----ecCC-------C-----CChHHHHHHHHHHH
Confidence 56554221 111 123445555555565554 3422 1 12223344444444
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L 349 (479)
++ +|.+ ..+ +|++ +.||.++++++++. ++ |++ |||||++ |+++|++|
T Consensus 185 ~a---~g~~-~~l~vDan-----------------------~~~~~~~a~~~~~~-l~-~~i-~iEqP~~--d~~~~~~l 232 (378)
T 2qdd_A 185 AG---LPDG-HRVTFDVN-----------------------RAWTPAIAVEVLNS-VR-ARD-WIEQPCQ--TLDQCAHV 232 (378)
T ss_dssp HS---CCTT-CEEEEECT-----------------------TCCCHHHHHHHHTS-CC-CCC-EEECCSS--SHHHHHHH
T ss_pred HH---hCCC-CEEEEeCC-----------------------CCCCHHHHHHHHHH-hC-CCc-EEEcCCC--CHHHHHHH
Confidence 43 4644 346 8873 35788999988654 68 999 9999998 99999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS-- 426 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~-- 426 (479)
++++ +||++||+.. ++++++++++.+++|++ ++|++++||+|++++++++|+++|++++++ ++.|+..+
T Consensus 233 ~~~~~iPI~~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~-~~~es~i~~a 304 (378)
T 2qdd_A 233 ARRVANPIMLDECLH-EFSDHLAAWSRGACEGV------KIKPNRVGGLTRARQIRDFGVSVGWQMHIE-DVGGTALADT 304 (378)
T ss_dssp HTTCCSCEEECTTCC-SHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHHTCEEEEC-CSSCCHHHHH
T ss_pred HHhCCCCEEECCCcC-CHHHHHHHHHhCCCCEE------EecccccCCHHHHHHHHHHHHHcCCeEEec-CCCCcHHHHH
Confidence 9999 9999999865 59999999999999999 999999999999999999999999998665 45677654
Q ss_pred HHHHhHhhcCC
Q 011677 427 FIADLSVGLAS 437 (479)
Q Consensus 427 ~~~dlAv~~~~ 437 (479)
+.+|||.++..
T Consensus 305 a~~hlaaa~~~ 315 (378)
T 2qdd_A 305 AALHLAASTPE 315 (378)
T ss_dssp HHHHHHHTSCT
T ss_pred HHHHHHHcCCC
Confidence 45666666543
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=334.98 Aligned_cols=296 Identities=15% Similarity=0.111 Sum_probs=222.0
Q ss_pred ceeeEEEEEEEecCCCC--------------------c-----------eEEEEEEeCCCceeeecCCCCCCCceeeeee
Q 011677 45 SVITKIKARQILDSRGI--------------------P-----------TVEVDLFTHKGMFRASVPSGDPSGMYEALEL 93 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~--------------------~-----------~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~ 93 (479)
|+|++|+.+.+.-.... | +++|+|+|++|++ |+||+.+.
T Consensus 3 mkI~~i~~~~~~~pl~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~ 72 (388)
T 2nql_A 3 SPIATVEVFTLTQPRKVPYLGALREGEVVNPNGYIVRKGNRTVYPTFDRSVLVRMTTEAGTV----------GWGETYGI 72 (388)
T ss_dssp CCEEEEEEEEEEECCCSCCGGGCCSCCCCBGGGEEECTTTCCEEESSEEEEEEEEEETTCCE----------EEEEEECS
T ss_pred ceEeEEEEEEEeccCcccccccccccccccccccccCCccccccCccceEEEEEEEECCCCE----------EEEEecCC
Confidence 69999999988422111 2 6899999999984 99998653
Q ss_pred ccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCC--CchhhhHHHHHHHHHHHHHHHhcCch
Q 011677 94 RDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKK--GELGANAILAVSIAACKAGAAEKEVP 171 (479)
Q Consensus 94 ~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~--~~~g~~A~~AvsiAl~da~ak~~g~P 171 (479)
.+++ .+...|++.++|.|+|+|+.+++.+|+.|.++ ++.+. .++..+|++|||+||||+.||..|+|
T Consensus 73 --------~~~~--~~~~~i~~~l~~~l~G~d~~~~~~i~~~l~~~-~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~P 141 (388)
T 2nql_A 73 --------VAPG--AVAALINDLLAGFVIGRDASDPSAVYDDLYDM-MRVRGYTGGFYVDALAALDIALWDIAGQEAGKS 141 (388)
T ss_dssp --------SCHH--HHHHHHHHTHHHHHTTCCSSSHHHHHHHHHHH-HGGGTCSSHHHHHHHHHHHHHHHHHHHHHHTSB
T ss_pred --------CCcH--HHHHHHHHHHHHHhcCCCcccHHHHHHHHHhh-cccccCCchHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 2222 45666777799999999999999999999542 22222 24567999999999999999999999
Q ss_pred hHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCC
Q 011677 172 LYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGE 251 (479)
Q Consensus 172 Ly~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~ 251 (479)
||++||| . +.++| .|+++ |.+. +.++ ..+++.+...++|+.+| .|.| .
T Consensus 142 l~~llGg---~-~~~vp--~~~~~--g~~~----~~e~---------~~~~a~~~~~~Gf~~vK----ik~g-------~ 189 (388)
T 2nql_A 142 IRDLLGG---G-VDSFP--AYVSG--LPER----TLKA---------RGELAKYWQDRGFNAFK----FATP-------V 189 (388)
T ss_dssp HHHHTTC---C-CSEEE--EEEEC--CCCS----SHHH---------HHHHHHHHHHTTCCEEE----EEGG-------G
T ss_pred HHHHhCC---C-CCceE--eeEEe--CCCC----CHHH---------HHHHHHHHHHhCCCEEE----EeCC-------C
Confidence 9999998 3 34544 46543 2111 1222 23444444444555554 3322 1
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 011677 252 DGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYP 330 (479)
Q Consensus 252 ~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~ 330 (479)
.+.+. .+.++.||+++ |.+ ..+ +|++ +.||.++++++++ .+++|+
T Consensus 190 -----~~~~~-~e~v~avr~a~---g~d-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~~ 235 (388)
T 2nql_A 190 -----ADDGP-AAEIANLRQVL---GPQ-AKIAADMH-----------------------WNQTPERALELIA-EMQPFD 235 (388)
T ss_dssp -----CTTCH-HHHHHHHHHHH---CTT-SEEEEECC-----------------------SCSCHHHHHHHHH-HHGGGC
T ss_pred -----CChHH-HHHHHHHHHHh---CCC-CEEEEECC-----------------------CCCCHHHHHHHHH-HHhhcC
Confidence 12344 56677776666 644 345 8873 3578899998865 589999
Q ss_pred ceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhh
Q 011677 331 IVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLAND 409 (479)
Q Consensus 331 i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~ 409 (479)
+.|||||++++|+++|++|++++ +||++||+.. ++++++++++.+++|+| ++|+++ ||+|++++++++|++
T Consensus 236 i~~iEqP~~~~d~~~~~~l~~~~~iPI~~dE~~~-~~~~~~~~i~~~~~d~v------~ik~~~-GGit~~~~i~~~A~~ 307 (388)
T 2nql_A 236 PWFAEAPVWTEDIAGLEKVSKNTDVPIAVGEEWR-THWDMRARIERCRIAIV------QPEMGH-KGITNFIRIGALAAE 307 (388)
T ss_dssp CSCEECCSCTTCHHHHHHHHTSCCSCEEECTTCC-SHHHHHHHHTTSCCSEE------CCCHHH-HCHHHHHHHHHHHHH
T ss_pred CCEEECCCChhhHHHHHHHHhhCCCCEEEeCCcC-CHHHHHHHHHcCCCCEE------EecCCC-CCHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999865 69999999999999999 999999 999999999999999
Q ss_pred CCCeEEEecCCCCCchh--HHHHhHhhcC
Q 011677 410 VPWGVVISHRSGETEDS--FIADLSVGLA 436 (479)
Q Consensus 410 ~g~~~~v~h~~get~d~--~~~dlAv~~~ 436 (479)
+|+++++ |++.||..+ +.+|||.++.
T Consensus 308 ~g~~~~~-h~~~es~i~~aa~~hlaa~~~ 335 (388)
T 2nql_A 308 HGIDVIP-HATVGAGIFLAASLQASSTLS 335 (388)
T ss_dssp HTCEECC-CCCSSCSHHHHHHHHHHTTCT
T ss_pred cCCeEEe-ecCCCcHHHHHHHHHHHHhCC
Confidence 9999866 767788765 4556665553
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=338.68 Aligned_cols=291 Identities=19% Similarity=0.200 Sum_probs=223.5
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.+ ++++.|+|+|+ |+ +|+||+...+. +.|.++++.++...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td-G~----------~G~GE~~~~~~---~~~~~e~~~~~~~~ 66 (369)
T 2zc8_A 1 MRIEAAELRILELPLKFRFETSFGVQTKRTILLLRLFGE-GL----------EGLGEGVMERL---PLYREETVAGARYL 66 (369)
T ss_dssp CBCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEET-TE----------EEEEECCCBSS---CSSSSCBHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCEEEeeEEEeeCcEEEEEEEEC-Ce----------EEEEEeccCCC---CcccCCCHHHHHHH
Confidence 689999988773 2222 46799999995 98 49999876532 46888999988888
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+++.++|.|+|+|+.+++++|+.|..+.+ +.+|++|||+||||+.||..|+|||++||| . +.++|++ |
T Consensus 67 i~~~l~~~l~G~d~~~~~~l~~~~~~~~g-------~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~-~~~~~~~-~ 134 (369)
T 2zc8_A 67 LEEVFLPRVLGRDLPNPEALREALAPFRG-------NPMAKAVLEMAFFDLWAKALGRPLWQVLGG---V-RQAVEVG-V 134 (369)
T ss_dssp HHHTHHHHHTTCBCSSHHHHHHHHTTSCS-------CHHHHHHHHHHHHHHHHHHTTSBHHHHHTC---C-CSEEEBC-E
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CCceece-E
Confidence 98889999999999999999988854321 257999999999999999999999999998 3 2355654 4
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEA 272 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~a 272 (479)
++ |.+. +.++ ..+++.+...++|+.+| .| ++ + +.+.+.++.||++
T Consensus 135 ~~---g~~~----~~~~---------~~~~a~~~~~~G~~~iK----ik-------~~------~--~~d~~~v~avr~a 179 (369)
T 2zc8_A 135 SL---GIQP----SVED---------TLRVVERHLEEGYRRIK----LK-------IK------P--GWDYEVLKAVREA 179 (369)
T ss_dssp EE---CCCS----SHHH---------HHHHHHHHHHTTCSCEE----EE-------CB------T--TBSHHHHHHHHHH
T ss_pred Ee---cCCC----CHHH---------HHHHHHHHHHhhhheee----ee-------cC------h--hHHHHHHHHHHHH
Confidence 42 2210 1111 23444444445555544 23 11 2 2346777777766
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+ .+ ..+ +|+| +.||.++ +++. +.+++|++.|||||++++|+++|++|++
T Consensus 180 ~----~~-~~l~vDan-----------------------~~~~~~~-~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~~ 229 (369)
T 2zc8_A 180 F----PE-ATLTADAN-----------------------SAYSLAN-LAQL-KRLDELRLDYIEQPLAYDDLLDHAKLQR 229 (369)
T ss_dssp C----TT-SCEEEECT-----------------------TCCCGGG-HHHH-HGGGGGCCSCEECCSCTTCSHHHHHHHH
T ss_pred c----CC-CeEEEecC-----------------------CCCCHHH-HHHH-HHHHhCCCcEEECCCCcccHHHHHHHHh
Confidence 5 12 345 8983 2457778 8765 5589999999999999999999999999
Q ss_pred hh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HH
Q 011677 352 IC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FI 428 (479)
Q Consensus 352 ~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~ 428 (479)
++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|+++|++|+. |+..+ +.
T Consensus 230 ~~~ipIa~dE~~-~~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~-es~i~~aa~ 301 (369)
T 2zc8_A 230 ELSTPICLDESL-TGAEKARKAIELGAGRVF------NVKPARLGGHGESLRVHALAESAGIPLWMGGML-EAGVGRAHN 301 (369)
T ss_dssp HCSSCEEESTTC-CSHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCCEEECCCC-CCHHHHHHH
T ss_pred hCCCCEEEcCcc-CCHHHHHHHHHhCCCCEE------EEchhhhCCHHHHHHHHHHHHHcCCcEEecCcc-ccHHHHHHH
Confidence 99 999999986 669999999999999999 999999999999999999999999999999986 66554 45
Q ss_pred HHhHhhc
Q 011677 429 ADLSVGL 435 (479)
Q Consensus 429 ~dlAv~~ 435 (479)
+||| ++
T Consensus 302 ~hla-a~ 307 (369)
T 2zc8_A 302 LHLA-TL 307 (369)
T ss_dssp HHHT-TS
T ss_pred HHHH-cC
Confidence 6666 44
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=334.22 Aligned_cols=301 Identities=19% Similarity=0.231 Sum_probs=224.0
Q ss_pred CceeeEEEEEEEe---------cCCC-----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHH
Q 011677 44 PSVITKIKARQIL---------DSRG-----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRA 109 (479)
Q Consensus 44 ~~~I~~I~~~~i~---------ds~g-----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~a 109 (479)
+|+|++|+.+.+. .+++ +..+.|+|+|++|++ |+||+.++. +.|++++...+
T Consensus 2 ~MkI~~i~~~~~~~pl~~p~~~~s~g~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~----~~~~~e~~~~~ 67 (386)
T 3fv9_G 2 SLKITRIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLT----------GWGESTPFG----STYIAAHAGGT 67 (386)
T ss_dssp -CCEEEEEEEEEEEEBSSSCEEETTTEEESEEEEEEEEEEETTSCE----------EEEEECCST----TSSSSCCHHHH
T ss_pred CCEEEEEEEEEEEeecCCCceEecCceEEeeeeEEEEEEEECCCCE----------EEEecccCC----CccCcccHHHH
Confidence 4799999998873 1223 246899999999994 999987642 35777777777
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCccccc
Q 011677 110 VKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPV 189 (479)
Q Consensus 110 v~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pv 189 (479)
...++ .++|.|+|+||.+.+++|+.|.+.. .+ ..+|++|||+||||+.||..|+|||++||| ..+.++|
T Consensus 68 ~~~l~-~l~~~l~G~d~~~~~~~~~~l~~~~----~g--~~~A~said~ALwDl~gk~~g~Pv~~LLGg---~~~~~v~- 136 (386)
T 3fv9_G 68 RAALE-LLAPAILGMDPRQHDRIWDRMRDTL----KG--HRDARAALDIACWDIAAQAAGLPLCDMTGG---RVAGPVP- 136 (386)
T ss_dssp HHHHH-HHHHHHTTSCTTCHHHHHHHHHHHC----SS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CCSSCBC-
T ss_pred HHHHH-HHHHHhCCCCcCCHHHHHHHHHHHh----cC--cHHHHHHHHHHHHHHHHHHcCCCHHHHhCC---CCCCcee-
Confidence 77775 5999999999999999999997632 11 157999999999999999999999999998 3344544
Q ss_pred ceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHH
Q 011677 190 PAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLV 269 (479)
Q Consensus 190 p~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v 269 (479)
.|..++.+ +. +...+++.+...++|+.+| .|.|.. .. ..+..+.++.|
T Consensus 137 -~y~s~~~~-------~~---------e~~~~~a~~~~~~G~~~~K----~Kvg~~-------~~----~~~~~~d~~~v 184 (386)
T 3fv9_G 137 -VISSIGGD-------TP---------EAMRAKVARHRAQGFKGHS----IKIGAS-------EA----EGGPALDAERI 184 (386)
T ss_dssp -EEEEECSC-------CH---------HHHHHHHHHHHHTTCCEEE----EECCCC-------TT----TTHHHHHHHHH
T ss_pred -eeEecCCC-------CH---------HHHHHHHHHHHHCCCCEEE----EeccCC-------CC----CCCHHHHHHHH
Confidence 45543321 11 1123344444444565554 454411 00 01234455555
Q ss_pred HHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHH-hhCCceeeecCCCccCHHHHH
Q 011677 270 KEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELC-ADYPIVSIEDPFDKEDWEHTK 347 (479)
Q Consensus 270 ~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll-~~~~i~~iEdP~~~~D~~g~~ 347 (479)
+...+.+|.+ ..+ +|+| +.||.++++++. +.+ +++++ |||||++ |+++++
T Consensus 185 ~avR~a~G~~-~~L~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~~i-~iEeP~~--~~~~~~ 236 (386)
T 3fv9_G 185 TACLADRQPG-EWYLADAN-----------------------NGLTVEHALRML-SLLPPGLDI-VLEAPCA--SWAETK 236 (386)
T ss_dssp HHHTTTCCTT-CEEEEECT-----------------------TCCCHHHHHHHH-HHSCSSCCC-EEECCCS--SHHHHH
T ss_pred HHHHHHcCCC-CeEEEECC-----------------------CCCCHHHHHHHH-HHhhccCCc-EEecCCC--CHHHHH
Confidence 4434445755 456 8983 367889999875 457 78999 9999999 899999
Q ss_pred HHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch-
Q 011677 348 SVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED- 425 (479)
Q Consensus 348 ~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d- 425 (479)
+|++++ +||++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|+. |+..
T Consensus 237 ~l~~~~~iPIa~dE~~~-~~~~~~~~~~~~a~d~v------~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~-es~i~ 308 (386)
T 3fv9_G 237 SLRARCALPLLLDELIQ-TETDLIAAIRDDLCDGV------GLKVSKQGGITPMLRQRAIAAAAGMVMSVQDTV-GSQIS 308 (386)
T ss_dssp HHHTTCCSCEEESTTCC-SHHHHHHHHHTTCCSEE------EEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSS-CCHHH
T ss_pred HHHhhCCCCEEeCCCcC-CHHHHHHHHHhCCCCEE------EECccccCCHHHHHHHHHHHHHcCCEEEeCCCC-CCHHH
Confidence 999999 9999999865 59999999999999999 999999999999999999999999999998875 5544
Q ss_pred -hHHHHhHhhcCC
Q 011677 426 -SFIADLSVGLAS 437 (479)
Q Consensus 426 -~~~~dlAv~~~~ 437 (479)
++.+|||.++..
T Consensus 309 ~aa~~hlaaa~~~ 321 (386)
T 3fv9_G 309 FAAILHLAQSTPR 321 (386)
T ss_dssp HHHHHHHHHTSCT
T ss_pred HHHHHHHHHhCCC
Confidence 566677776654
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=337.05 Aligned_cols=303 Identities=17% Similarity=0.157 Sum_probs=220.0
Q ss_pred ceeeEEEEEEEecCCCC----ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHh
Q 011677 45 SVITKIKARQILDSRGI----PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEA 120 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~----~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~ 120 (479)
|+|++|+++.+.-.... ..+.|+|+|++|++ |+||+..+. ..+.|.++++ .+.+.++|.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~V~v~td~G~~----------G~GE~~~~~--~~p~~~~e~~-----~i~~~l~p~ 63 (391)
T 3gd6_A 1 MKITDLELHAVGIPRHTGFVNKHVIVKIHTDEGLT----------GIGEMSDFS--HLPLYSVDLH-----DLKQGLLSI 63 (391)
T ss_dssp CCEEEEEEEEEEEEBTTSCEEEEEEEEEEETTSCE----------EEEEECCCS--SSSSCCCCHH-----HHHHHHHHH
T ss_pred CEEEEEEEEEEecccCCCcccceEEEEEEECCCCE----------EEecccccc--CCCccchhHH-----HHHHHHHHH
Confidence 69999999988533222 46899999999994 999986531 0134667654 466789999
Q ss_pred hcCCCCCCHHHHHHHHHhhhc-cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCc
Q 011677 121 LVGMDPILQSQIDQAMIDLDK-TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGK 199 (479)
Q Consensus 121 LiG~d~~~~~~id~~l~~~~~-~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~ 199 (479)
|+|+||.+.+++|+.|.+... ......-+.+|++|||+||||+.||.+|+|||++||| ..+.++|+ |..++...
T Consensus 64 liG~d~~~~~~~~~~l~~~~~~~~~~~~g~~~A~said~ALwDl~gK~~g~Pl~~LLGg---~~r~~v~~--y~t~~~~~ 138 (391)
T 3gd6_A 64 LLGQNPFDLMKINKELTDNFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLGG---RVKEKIKV--CYPIFRHR 138 (391)
T ss_dssp HTTCCTTCHHHHHHHHHHHSCCCSCTTCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSCSEEEB--CEEECCCS
T ss_pred hCCCCccCHHHHHHHHHHHhhhcccccCcchHHHHHHHHHHHHHHhcccCCcHHHHhCC---CcCCeEEe--eEEecccc
Confidence 999999999999999986321 1111112468999999999999999999999999998 33455555 44432100
Q ss_pred cCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCC
Q 011677 200 HAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIP 279 (479)
Q Consensus 200 ~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~ 279 (479)
.. . + .+...+++.+...++|+.+| .|.| . +.+.+.+.++.||+++ |.+
T Consensus 139 ~~-~--~---------~e~~~~~a~~~~~~G~~~~K----iKvG-------~------~~~~d~~~v~avR~a~---g~~ 186 (391)
T 3gd6_A 139 FS-E--E---------VESNLDVVRQKLEQGFDVFR----LYVG-------K------NLDADEEFLSRVKEEF---GSR 186 (391)
T ss_dssp ST-T--H---------HHHHHHHHHHHHHTTCCEEE----EECS-------S------CHHHHHHHHHHHHHHH---GGG
T ss_pred cC-C--C---------HHHHHHHHHHHHHcCCCEEE----EeeC-------C------CHHHHHHHHHHHHHHc---CCC
Confidence 00 0 0 01123344444444555544 4433 1 2234566677777666 533
Q ss_pred CCc-e-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCc--eeeecCCCccCHHHHHHHHhhh-h
Q 011677 280 SSK-W-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPI--VSIEDPFDKEDWEHTKSVLQIC-Q 354 (479)
Q Consensus 280 ~~~-i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i--~~iEdP~~~~D~~g~~~L~~~~-~ 354 (479)
.. . +|+| +.||.++++++. +.+++|++ .|||||++++|++++++|++++ +
T Consensus 187 -~~l~~vDan-----------------------~~~~~~~A~~~~-~~l~~~~i~~~~iEqP~~~~d~~~~~~l~~~~~i 241 (391)
T 3gd6_A 187 -VRIKSYDFS-----------------------HLLNWKDAHRAI-KRLTKYDLGLEMIESPAPRNDFDGLYQLRLKTDY 241 (391)
T ss_dssp -CEEEEEECT-----------------------TCSCHHHHHHHH-HHHTTCCSSCCEEECCSCTTCHHHHHHHHHHCSS
T ss_pred -CcEEEecCC-----------------------CCcCHHHHHHHH-HHHHhcCCCcceecCCCChhhHHHHHHHHHHcCC
Confidence 22 2 5662 467899999875 56899999 9999999999999999999999 9
Q ss_pred hhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhH
Q 011677 355 QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLS 432 (479)
Q Consensus 355 ~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlA 432 (479)
|| ||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|+ .|+.. ++.+|||
T Consensus 242 PI--dE~~-~~~~~~~~~~~~~~~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~-~es~i~~aa~~hla 311 (391)
T 3gd6_A 242 PI--SEHV-WSFKQQQEMIKKDAIDIF------NISPVFIGGLTSAKKAAYAAEVASKDVVLGTT-QELSVGTAAMAHLG 311 (391)
T ss_dssp CE--EEEC-CCHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEECCC-CCCHHHHHHHHHHH
T ss_pred Cc--CCCC-CCHHHHHHHHHcCCCCEE------EECchhcCCHHHHHHHHHHHHHcCCEEEecCC-CccHHHHHHHHHHH
Confidence 99 8864 569999999999999999 99999999999999999999999999877664 46655 4556666
Q ss_pred hhcC
Q 011677 433 VGLA 436 (479)
Q Consensus 433 v~~~ 436 (479)
.++.
T Consensus 312 aa~~ 315 (391)
T 3gd6_A 312 CSLT 315 (391)
T ss_dssp TTCS
T ss_pred HhCC
Confidence 6553
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=334.45 Aligned_cols=296 Identities=16% Similarity=0.188 Sum_probs=219.1
Q ss_pred CceeeEEEEEEEe--------cCCC------CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG------IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRA 109 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g------~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~a 109 (479)
||+|++|+.+.+. .+.| ...+.|+|+|++|+ +|+||+.++. +.|.+++...+
T Consensus 2 ~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~~~V~v~td~G~----------~G~GE~~~~~----~~~~~~~~~~~ 67 (378)
T 3eez_A 2 SLKITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGI----------TGWGEGTPWG----HTYVPAHGPGI 67 (378)
T ss_dssp -CCEEEEEEEEEEEEBSSCCC------CCCEEEEEEEEEEETTCC----------CEEEEECCSC----SSSSSCCHHHH
T ss_pred CcEEEEEEEEEEeccCCCceeecCCcceeeeeeEEEEEEEECCCC----------EEEecccCCC----CccCCCcHHHH
Confidence 6899999999883 2223 24689999999998 5999987642 35777777777
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCccccc
Q 011677 110 VKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPV 189 (479)
Q Consensus 110 v~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pv 189 (479)
...++ .++|.|+|+||.+.+++|+.|.+.. .+. .+|++|||+||||+.||..|+|||++||| ..+.++|+
T Consensus 68 ~~~l~-~l~p~l~G~d~~~~~~~~~~l~~~~----~g~--~~A~said~ALwDl~gk~~g~Pl~~LlGg---~~r~~v~~ 137 (378)
T 3eez_A 68 RAGIE-TMAPFVLGLDPRRLLDVERAMDIAL----PGH--LYAKSPIDMACWDIAGQAAGLPIADLMGG---GSRTPRPI 137 (378)
T ss_dssp HHHHH-HHHHHHTTSCTTCHHHHHHHHHHHS----SSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTC---CCCSCEEB
T ss_pred HHHHH-HHHHHhcCCCcCCHHHHHHHHHHHh----cCc--HHHHHHHHHHHHHHHHHHhCCcHHHHhCC---CCCCeEEE
Confidence 77775 5999999999999999999997631 111 47999999999999999999999999998 33445555
Q ss_pred ceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHH
Q 011677 190 PAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLV 269 (479)
Q Consensus 190 p~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v 269 (479)
|..++++ +. +...+++.+...++|+.+| .|.| + ++++.++.|
T Consensus 138 --~~~~~~~-------~~---------e~~~~~a~~~~~~G~~~iK----iK~G----------~------~~~~d~~~v 179 (378)
T 3eez_A 138 --ASSVGAK-------SV---------EETRAVIDRYRQRGYVAHS----VKIG----------G------DVERDIARI 179 (378)
T ss_dssp --BCCBCSC-------CH---------HHHHHHHHHHHHTTCCEEE----EECC----------S------CHHHHHHHH
T ss_pred --EEEecCC-------CH---------HHHHHHHHHHHhCCCCEEE----eccC----------C------CHHHHHHHH
Confidence 4332211 11 1122333333334454444 3433 1 123445555
Q ss_pred HHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHH
Q 011677 270 KEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 270 ~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~ 348 (479)
+...+.+|.+ ..+ +|+| +.||.++++++. +.++++++ |||||++ |++++++
T Consensus 180 ~avR~a~g~~-~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i-~iEqP~~--~~~~~~~ 231 (378)
T 3eez_A 180 RDVEDIREPG-EIVLYDVN-----------------------RGWTRQQALRVM-RATEDLHV-MFEQPGE--TLDDIAA 231 (378)
T ss_dssp HHHTTSCCTT-CEEEEECT-----------------------TCCCHHHHHHHH-HHTGGGTC-CEECCSS--SHHHHHH
T ss_pred HHHHHHcCCC-ceEEEECC-----------------------CCCCHHHHHHHH-HHhccCCe-EEecCCC--CHHHHHH
Confidence 4333344644 456 8883 367889999875 55799999 9999998 9999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED-- 425 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d-- 425 (479)
|++++ +||++||... ++++++++++.+++|++ ++|++++||+|++++++++|+++|++++++|+. |+..
T Consensus 232 l~~~~~iPIa~dE~~~-~~~~~~~~l~~~~~d~v------~ik~~~~GGit~~~~ia~~A~~~g~~~~~~~~~-es~i~~ 303 (378)
T 3eez_A 232 IRPLHSAPVSVDECLV-TLQDAARVARDGLAEVF------GIKLNRVGGLTRAARMRDIALTHGIDMFVMATG-GSVLAD 303 (378)
T ss_dssp TGGGCCCCEEECTTCC-SHHHHHHHHHTTCCSEE------EEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSS-CSHHHH
T ss_pred HHhhCCCCEEECCCCC-CHHHHHHHHHcCCCCEE------EeCchhcCCHHHHHHHHHHHHHcCCEEEcCCCC-CCHHHH
Confidence 99999 9999999865 59999999999999999 999999999999999999999999999988865 5544
Q ss_pred hHHHHhHhhcCC
Q 011677 426 SFIADLSVGLAS 437 (479)
Q Consensus 426 ~~~~dlAv~~~~ 437 (479)
++.+|||.++..
T Consensus 304 aa~~hlaaa~~~ 315 (378)
T 3eez_A 304 AEALHLAATIPD 315 (378)
T ss_dssp HHHHHHHHTSCG
T ss_pred HHHHHHHHhCCC
Confidence 456777776644
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=331.85 Aligned_cols=273 Identities=15% Similarity=0.103 Sum_probs=203.5
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
.++.|+|+|++|++ |+||+.. + ..+...+++.++|.|+|+||.+.+++|+.|.+...
T Consensus 59 ~~v~V~v~td~G~~----------G~Ge~~~----------g---~~~~~~i~~~l~p~LiG~dp~~ie~i~~~m~~~~~ 115 (404)
T 3ekg_A 59 GTLVVEIEASDGNV----------GFAVTTG----------G---EPAAYIVEKHLARFLEGARVTDIERIWDQMYNSTL 115 (404)
T ss_dssp CEEEEEEEETTSCE----------EEEEEEC----------H---HHHHHHHHHTTHHHHTTSBTTCHHHHHHHHHHHHG
T ss_pred cEEEEEEEECCCCE----------EEEeCCC----------c---HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhh
Confidence 35999999999994 9998642 2 23344677889999999999999999999986321
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHH
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFG 221 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ 221 (479)
....+++..+|++|||+||||+.||.+|+|||+|||| ..+.++| +|++ |+ ..+
T Consensus 116 ~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~--~y~~--g~--------------------~~~ 168 (404)
T 3ekg_A 116 YYGRKGLVINTISGVDLALWDLLGKVRREPVHQLLGG---AVRDELQ--FYAT--GA--------------------RPD 168 (404)
T ss_dssp GGCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---CSSSEEE--EEEE--SS--------------------CHH
T ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHHcCC---CCCCeeE--EecC--CC--------------------CHH
Confidence 1222335568999999999999999999999999998 3344544 4653 21 011
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeec
Q 011677 222 EALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDL 300 (479)
Q Consensus 222 ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~ 300 (479)
.+. .++|+.+| .|.|.. .. .|. .+++.+.++++.||+++ |.+ ..+ +|+|
T Consensus 169 ~~~---~~Gf~~~K----~Kv~~g---~~-~g~--~~~~~di~~v~avRea~---G~~-~~L~vDaN------------- 218 (404)
T 3ekg_A 169 LAQ---KMGFIGGK----MPLHHG---PS-EGE--EGLKKNLEELATMRERV---GPD-FWLMFDCW------------- 218 (404)
T ss_dssp HHH---HTTCSEEE----EECCCC---GG-GHH--HHHHHHHHHHHHHHHHH---CSS-SEEEEECT-------------
T ss_pred HHH---HcCCCEEE----EecCCC---Cc-ccc--ccHHHHHHHHHHHHHHh---CCC-CeEEecCC-------------
Confidence 222 23465554 343210 00 000 01233455666666665 754 456 9984
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hh--hhcCCccccCHHHHHHHhcCCC
Q 011677 301 DFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQ--VVGDDLLMSNPKRIERATLIPL 377 (479)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~--I~gde~~~t~~~~~~~~i~~~a 377 (479)
+.||.++++++.+ .+++|++.|||||++++|++++++|++++ +| |++||...+ +++++++++.++
T Consensus 219 ----------~~w~~~~A~~~~~-~Le~~~l~~iEeP~~~~d~~~~a~l~~~~~~pi~Ia~gE~~~~-~~~~~~li~~~a 286 (404)
T 3ekg_A 219 ----------MSLDLNYATRLAR-GAREYGLKWIEEALPPDDYWGYAELRRNAPTGMMVTTGEHEAT-RWGFRMLLEMGC 286 (404)
T ss_dssp ----------TCCCHHHHHHHHH-HHGGGTCCEEECCSCTTCHHHHHHHHHHSCTTCEEEECTTCCH-HHHHHHHHHTTC
T ss_pred ----------CCCCHHHHHHHHH-HHhhcCCcEEecCCCcccHHHHHHHHHhcCCCeEEEecCccCC-HHHHHHHHHcCC
Confidence 3678999998754 57999999999999999999999999999 66 889998654 999999999999
Q ss_pred CceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCC
Q 011677 378 AMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 378 ~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~ 437 (479)
+|++ |+|++++||||++++++++|+++|++++ .|+++ ...+||+.++..
T Consensus 287 ~dii------~~d~~~~GGitea~kia~lA~a~gv~v~-~h~~~----~a~~hl~aa~pn 335 (404)
T 3ekg_A 287 CDII------QPDVGWCGGVTELLKISALADAHNALVV-PHGSS----VYSYHFVATRQN 335 (404)
T ss_dssp CSEE------CCCTTTTTHHHHHHHHHHHHHHTTCEEC-CCCCT----HHHHHHHTTCTT
T ss_pred CCeE------ecChhhcCCccHHHHHHHHHHHcCCEEE-ecCcH----HHHHHHHHhCCC
Confidence 9999 9999999999999999999999999975 56543 367888887644
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=336.17 Aligned_cols=298 Identities=17% Similarity=0.126 Sum_probs=216.1
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
||+|++|+.+.+. .|.| ...+.|+|+|++|++ |+||+.. +++ +..
T Consensus 23 mMkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~----------G~GE~~~----------g~~---~~~ 79 (398)
T 4dye_A 23 MMKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVE----------GWGETMW----------GAP---VAA 79 (398)
T ss_dssp CCCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEEEC----------SHH---HHH
T ss_pred CceEEEEEEEEEeecccccccccccccccceEEEEEEEECCCCE----------EEEeecC----------chH---HHH
Confidence 8999999998883 3333 346899999999994 9999853 222 233
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccce
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPA 191 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~ 191 (479)
.+ +.++|.|+|+||.+.+.+|+.|.+... ..+..+.+|++|||+||||+.||..|+|||++||| ..+.++|+
T Consensus 80 ~i-~~l~p~liG~d~~~~~~~~~~l~~~~~--~~g~~~~~A~said~ALwDl~gK~~g~Pl~~LLGg---~~r~~v~~-- 151 (398)
T 4dye_A 80 IV-RRMAPDLIGTSPFALEAFHRKQHMVPF--FYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLGG---AVRDEVPI-- 151 (398)
T ss_dssp HH-HHHHHHHTTCCTTCHHHHHHHTTTHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CSCSEEEB--
T ss_pred HH-HHHHHHHcCCCccCHHHHHHHHHhhhh--hhccccHHHHHHHHHHHHHHHHHHcCCcHHHHcCC---CcCCeEEE--
Confidence 44 679999999999999999998853110 01123468999999999999999999999999998 33455555
Q ss_pred EEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHH-HHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 192 FTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSE-TYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 192 ~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e-~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
|..+.. ...++..... ..+...+++.+...+ +|+.+| .|.| .+.+.+.+.++.||
T Consensus 152 y~s~~~-~~~~g~~~~~------~~e~~~~~a~~~~~~~G~~~~K----~KvG-------------~~~~~d~~~v~avR 207 (398)
T 4dye_A 152 TALITR-ADAPGATPAD------LPKAMAEHAVRVVEEGGFDAVK----LKGT-------------TDCAGDVAILRAVR 207 (398)
T ss_dssp EEEECG-GGSTTCCTTT------HHHHHHHHHHHHHHHHCCSEEE----EECC-------------SCHHHHHHHHHHHH
T ss_pred EEEEec-cccCCcccCC------CHHHHHHHHHHHHHhcCCCEEE----EecC-------------CCHHHHHHHHHHHH
Confidence 544311 0000000000 001123344444444 565554 4432 11233455555555
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L 349 (479)
+++ .+ ..+ +|+| +.||.++++++. +.+++|++.|||||++ |++++++|
T Consensus 208 ~~~----~~-~~l~vDaN-----------------------~~w~~~~A~~~~-~~l~~~~i~~iEqP~~--d~~~~~~l 256 (398)
T 4dye_A 208 EAL----PG-VNLRVDPN-----------------------AAWSVPDSVRAG-IALEELDLEYLEDPCV--GIEGMAQV 256 (398)
T ss_dssp HHC----TT-SEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCCSEEECCSS--HHHHHHHH
T ss_pred HhC----CC-CeEEeeCC-----------------------CCCCHHHHHHHH-HHHhhcCCCEEcCCCC--CHHHHHHH
Confidence 554 22 356 9983 367889999875 5579999999999999 99999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHH
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFI 428 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~ 428 (479)
++++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|+++++ |+.+|+..+..
T Consensus 257 ~~~~~iPIa~dE~~-~~~~~~~~~i~~~a~d~v------~~k~~~~GGit~~~~ia~~A~~~gi~~~~-h~~~e~~i~~a 328 (398)
T 4dye_A 257 KAKVRIPLCTNMCV-VRFEDFAPAMRLNAVDVI------HGDVYKWGGIAATKALAAHCETFGLGMNL-HSGGELGIATA 328 (398)
T ss_dssp HHHCCSCEEESSSC-CSGGGHHHHHHTTCCSEE------EECHHHHTSHHHHHHHHHHHHHHTCEEEE-CCSCCCHHHHH
T ss_pred HhhCCCCEEeCCcC-CCHHHHHHHHHhCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCeEEE-cCCcchHHHHH
Confidence 9999 999999976 559999999999999999 99999999999999999999999999866 55788877766
Q ss_pred HHhHhhc
Q 011677 429 ADLSVGL 435 (479)
Q Consensus 429 ~dlAv~~ 435 (479)
++++++.
T Consensus 329 a~l~laa 335 (398)
T 4dye_A 329 AHLAVVS 335 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=333.54 Aligned_cols=319 Identities=15% Similarity=0.099 Sum_probs=219.6
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
+|+|++|+++.+ +...++.+.|+|+|++|++ |+||+.. .|+.+++. ..+ +.++|.|+|
T Consensus 2 ~MkI~~i~~~~~-~~~~~~~~~V~v~td~G~~----------G~GE~~~-------~~~~~~~~---~~i-~~l~p~liG 59 (409)
T 3go2_A 2 SLKVVSVDTLCC-DAGWRNYHFVKLTTDEGIV----------GWSEFDE-------GFGSPGVT---AVI-EQLGKRLVG 59 (409)
T ss_dssp CCBEEEEEEEEE-ECSSSEEEEEEEEETTCCE----------EEEEECS-------TTTCTTHH---HHH-HHHHHHHTT
T ss_pred CCEEEEEEEEEE-CCCCccEEEEEEEECCCCE----------EEEeecC-------CCCcHHHH---HHH-HHHHHHhcC
Confidence 389999999987 3445678999999999994 9999754 24444443 234 469999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+||.+++++|+.|.+... ...+++..+|++|||+||||+.||.+|+|||+|||| ..+.++|+ |....+|... .
T Consensus 60 ~d~~~~e~~~~~~~~~~~-~~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG---~~r~~v~~--y~s~~~~~~i-~ 132 (409)
T 3go2_A 60 ASVMEHERFFAEAYCLTR-PATGGVVSEGIGAIENALLDAKAKTLNVPCYELLGG---KLRDRVPV--YWSHCPTWRI-N 132 (409)
T ss_dssp SBTTCHHHHHHHHHHHHG-GGCSHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTC---CSCSEEEE--EECSTTHHHH-H
T ss_pred CChhhHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCC---CCCCeEEE--EEeecCcccc-c
Confidence 999999999999986322 223445578999999999999999999999999998 33455554 5432221100 0
Q ss_pred cccc-cceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCc------ccCCCCCCCCCCC-------chHHHHHHH
Q 011677 204 NLAI-QDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGC------NVGEDGGLAPNIS-------SIREGLDLV 269 (479)
Q Consensus 204 ~l~~-~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~------~vg~~G~~~~~~~-------~~~~~l~~v 269 (479)
..+. .+- ....+...+++.+...++|+++| .|.+.... ..|..+.+.+..+ .+.+.++.|
T Consensus 133 ~~~~~~~~--~~~~e~~~~~a~~~~~~Gf~~iK----lKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~av 206 (409)
T 3go2_A 133 HPKFFGPP--VTDLDGVKRTAEEARERQFRAIK----TNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEAL 206 (409)
T ss_dssp CTTTSSSC--CCSHHHHHHHHHHHHHTTCCEEE----ECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHH
T ss_pred cccccccC--CCCHHHHHHHHHHHHHcCCCEEE----EcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHH
Confidence 0000 000 00001122333333344555554 34310000 0011111222222 123455555
Q ss_pred HHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHH
Q 011677 270 KEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 270 ~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~ 348 (479)
|+++ |.+ ..| +|+| +.||.++++++. +.++++++.|||+|+ +|++++++
T Consensus 207 R~av---G~d-~~l~vDaN-----------------------~~~~~~~A~~~~-~~L~~~~i~~iE~P~--~d~~~~~~ 256 (409)
T 3go2_A 207 RDGA---GPD-VEILLDLN-----------------------FNAKPEGYLKIL-RELADFDLFWVEIDS--YSPQGLAY 256 (409)
T ss_dssp HHHH---CTT-SEEEEECT-----------------------TCSCHHHHHHHH-HHTTTSCCSEEECCC--SCHHHHHH
T ss_pred HHHh---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHhhcCCeEEEeCc--CCHHHHHH
Confidence 5555 654 456 8883 367899999875 557999999999997 49999999
Q ss_pred HHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--
Q 011677 349 VLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED-- 425 (479)
Q Consensus 349 L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d-- 425 (479)
|++++ +||++||+.. ++++++++++.+++|++ ++|+++ ||||++++++++|+++|+++++ |+ .++..
T Consensus 257 l~~~~~iPIa~dE~~~-~~~~~~~~i~~~~~d~v------~~k~~~-GGit~~~~ia~~A~~~gi~~~~-h~-~~s~i~~ 326 (409)
T 3go2_A 257 VRNHSPHPISSCETLF-GIREFKPFFDANAVDVA------IVDTIW-NGVWQSMKIAAFADAHDINVAP-HN-FYGHLCT 326 (409)
T ss_dssp HHHTCSSCEEECTTCC-HHHHHHHHHHTTCCSEE------EECHHH-HCHHHHHHHHHHHHHTTCEEEE-CC-CSCHHHH
T ss_pred HHhhCCCCEEeCCCcC-CHHHHHHHHHhCCCCEE------EeCCCC-CCHHHHHHHHHHHHHcCCEEee-cC-CCcHHHH
Confidence 99999 9999999865 59999999999999999 999999 9999999999999999999875 76 46644
Q ss_pred hHHHHhHhhcCC
Q 011677 426 SFIADLSVGLAS 437 (479)
Q Consensus 426 ~~~~dlAv~~~~ 437 (479)
++.+||+.++..
T Consensus 327 aa~~hlaaa~p~ 338 (409)
T 3go2_A 327 MINANFAAAVPN 338 (409)
T ss_dssp HHHHHHHHHCSS
T ss_pred HHHHHHHHcCCC
Confidence 456777776643
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-39 Score=333.70 Aligned_cols=273 Identities=18% Similarity=0.171 Sum_probs=203.9
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
++|.|+|+|++|++ |+||+.. + ..++..+.+.++|.|+|+||.+++++|+.|++...
T Consensus 65 ~~vlV~V~tddGi~----------G~Ge~~~----------~---~~~~~~i~~~lap~LiG~dp~~ie~i~~~m~~~~~ 121 (455)
T 3fxg_A 65 GSFLVEIEATDGTV----------GFATGFG----------G---PPACWLVHQHFERFLIGADPRNTNLLFEQMYRASM 121 (455)
T ss_dssp CEEEEEEEETTSCE----------EEEEEEC----------H---HHHHHHHHHTTHHHHTTCCTTCHHHHHHHHHHHTT
T ss_pred eEEEEEEEECCCCE----------EEEeCcC----------C---HHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHhhh
Confidence 35999999999994 9998642 1 23445677889999999999999999999986321
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHH
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFG 221 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ 221 (479)
...+.+...+|++|||+||||+.||.+|+|||+|||| ..+.++|+ |+. |+ ..+
T Consensus 122 ~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG---~~rd~vp~--y~~--g~--------------------~~~ 174 (455)
T 3fxg_A 122 FYGRKGLPIAVISVIDLALWDLLGKVRNEPVYRLIGG---ATKERLDF--YCT--GP--------------------EPT 174 (455)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTC---CSCSEEEE--EEE--SS--------------------CHH
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHHcCCCHHHHhCC---ccCCeeEE--eec--CC--------------------CHH
Confidence 1122334467999999999999999999999999998 33455555 543 21 011
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeec
Q 011677 222 EALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDL 300 (479)
Q Consensus 222 ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~ 300 (479)
.+ ..++|+.+| .|.|... .+|. .+.+.+.++++.||+++ |.+ ..| +|+|
T Consensus 175 ~~---~~~Gf~~~K----lKv~~~~----~~G~--~~~~~di~rv~avRea~---G~d-~~L~vDaN------------- 224 (455)
T 3fxg_A 175 AA---KAMGFWGGK----VPLPFCP----DDGH--EGLRKNVEFLRKHREAV---GPD-FPIMVDCY------------- 224 (455)
T ss_dssp HH---HHHTCSCEE----EECCCCG----GGHH--HHHHHHHHHHHHHHHHH---CSS-SCEEEECT-------------
T ss_pred HH---HHcCCCEEE----EcCCCCc----cccc--ccHHHHHHHHHHHHHHh---CCC-CeEEEeCC-------------
Confidence 22 234566555 3432100 0010 01123455555565555 755 456 9984
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 301 DFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.++++++. +.+++|+|.|||||++++|++++++|++++ +||++||+..+ +++++++++.+++
T Consensus 225 ----------~~wt~~~Ai~~~-~~Le~~~l~~iEEPl~~dd~~~la~L~~~~~~iPIA~gEs~~s-~~d~~~li~~~av 292 (455)
T 3fxg_A 225 ----------MSLNVSYTIELV-KACLDLNINWWEECLSPDDTDGFALIKRAHPTVKFTTGEHEYS-RYGFRKLVEGRNL 292 (455)
T ss_dssp ----------TCCCHHHHHHHH-HHTGGGCCSEEECCSCGGGGGGHHHHHHHCTTSEEEECTTCCH-HHHHHHHHTTCCC
T ss_pred ----------CCCCHHHHHHHH-HhcccCCcceecCCCCcchHHHHHHHHHhCCCCeEECCCccCC-HHHHHHHHHcCCC
Confidence 367899999875 558999999999999999999999999987 79999998655 9999999999999
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCC
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~ 437 (479)
|++ |+|++++||||++++++++|+++|+++ ++|.++ ...+||+.++.+
T Consensus 293 Dii------q~d~~~~GGItea~kIa~lA~a~Gv~v-~~H~~~----~aslHlaaa~pn 340 (455)
T 3fxg_A 293 DII------QPDVMWLGGLTELLKVAALAAAYDVPV-VPHASG----PYSYHFQISQPN 340 (455)
T ss_dssp SEE------CCCTTTSSCHHHHHHHHHHHHTTTCCB-CCCSCT----HHHHHHHTTCTT
T ss_pred CEE------EECccccCCHHHHHHHHHHHHHcCCEE-EecchH----HHHHHHHHhCCC
Confidence 999 999999999999999999999999997 557653 467888888744
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=328.72 Aligned_cols=293 Identities=17% Similarity=0.146 Sum_probs=219.9
Q ss_pred ceeeEEEEEEEec---------CCC-----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHH
Q 011677 45 SVITKIKARQILD---------SRG-----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAV 110 (479)
Q Consensus 45 ~~I~~I~~~~i~d---------s~g-----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av 110 (479)
|+|++|+.+.+.- +.+ .++++|+|+|++|+ +|+||+.++. +.|.++++.++.
T Consensus 3 mkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~----------~G~GE~~~~~----~~~~~~~~~~~~ 68 (379)
T 2rdx_A 3 LRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGL----------QGCGEFTPCG----ENYMIAHSEGVD 68 (379)
T ss_dssp CCEEEEEEEEEEEEBTTSCCEETTTEECSEEEEEEEEEEETTSC----------EEEEEEBCSS----TTSSSCCTTHHH
T ss_pred CEEEEEEEEEEeeecCCCCcEecCceeecccceEEEEEEECCCC----------EEEEEeecCC----CCcCCCCHHHHH
Confidence 7999999988731 122 24689999999998 4999987641 357777777777
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccc
Q 011677 111 KNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVP 190 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp 190 (479)
..|+ .++|.|+|+||.+++.+|+.|... . ++ ..+|++|||+||||+.||..|+|||++||| ..+.+ +|
T Consensus 69 ~~i~-~l~~~l~g~d~~~~~~~~~~l~~~---~-~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~~~~~--v~ 136 (379)
T 2rdx_A 69 AFAR-LAAPQLLGQDPRQVARMERLMDHL---V-QG--HGYAKAPFDAAFWDILGQATGQPVWMLLGG---KLCDG--AP 136 (379)
T ss_dssp HHHH-HHHHHHTTSCTTCHHHHHHHHHHH---S-SS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTS---CCCSS--EE
T ss_pred HHHH-HHHHHHcCCChhhHHHHHHHHHHH---h-cc--cHHHHHHHHHHHHHHhHHHhCCCHHHHcCC---CCCCc--ee
Confidence 7787 899999999999999999998431 1 12 468999999999999999999999999998 33344 45
Q ss_pred eEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 191 AFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 191 ~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
+|.+++.+ +.+ ...+++.+...++|+.+| .|.| . + ....++.|+
T Consensus 137 ~~~~~~~~-------~~~---------~~~~~a~~~~~~Gf~~iK----ik~g-------~------~---~~~~~e~v~ 180 (379)
T 2rdx_A 137 MYRVAPQR-------SEA---------ETRAELARHRAAGYRQFQ----IKVG-------A------D---WQSDIDRIR 180 (379)
T ss_dssp BCEECCCS-------CSH---------HHHHHHHHHHHTTCCEEE----EECC-------S------C---HHHHHHHHH
T ss_pred EEEEecCC-------CHH---------HHHHHHHHHHHcCCCEEE----Eecc-------C------C---HHHHHHHHH
Confidence 45543211 111 123444444444554444 3322 1 1 233444443
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L 349 (479)
...+.+|.+ ..+ +|++ +.||.++++++. +.++++++ |||||++ |++++++|
T Consensus 181 avr~a~g~d-~~l~vDan-----------------------~~~~~~~a~~~~-~~l~~~~i-~iE~P~~--~~~~~~~l 232 (379)
T 2rdx_A 181 ACLPLLEPG-EKAMADAN-----------------------QGWRVDNAIRLA-RATRDLDY-ILEQPCR--SYEECQQV 232 (379)
T ss_dssp HHGGGSCTT-CEEEEECT-----------------------TCSCHHHHHHHH-HHTTTSCC-EEECCSS--SHHHHHHH
T ss_pred HHHHhcCCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHHhCCe-EEeCCcC--CHHHHHHH
Confidence 333345644 445 8873 357889999876 55899999 9999998 99999999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHH
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFI 428 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~ 428 (479)
++++ +||++||.. +++++++++++.+++|+| ++|++++||+|++++++++|+++|+++|+++ +.|+..+..
T Consensus 233 ~~~~~iPI~~de~i-~~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~-~~es~i~~~ 304 (379)
T 2rdx_A 233 RRVADQPMKLDECV-TGLHMAQRIVADRGAEIC------CLKISNLGGLSKARRTRDFLIDNRMPVVAED-SWGGEIASA 304 (379)
T ss_dssp HTTCCSCEEECTTC-CSHHHHHHHHHHTCCSEE------EEETTTTTSHHHHHHHHHHHHHTTCCEEEEC-SBCSHHHHH
T ss_pred HhhCCCCEEEeCCc-CCHHHHHHHHHcCCCCEE------EEeccccCCHHHHHHHHHHHHHcCCeEEEee-ccCcHHHHH
Confidence 9999 999999976 569999999999999999 9999999999999999999999999987754 568887766
Q ss_pred HHhHhhc
Q 011677 429 ADLSVGL 435 (479)
Q Consensus 429 ~dlAv~~ 435 (479)
++++++.
T Consensus 305 a~~~laa 311 (379)
T 2rdx_A 305 AVAHFAA 311 (379)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555554
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=330.96 Aligned_cols=294 Identities=15% Similarity=0.134 Sum_probs=217.9
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccc-cHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGN-SVNRAV 110 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~-~~~~av 110 (479)
||+|++|+.+.+. .+.+ +++++|+|+|++|++ |+||+. +++ +. +.
T Consensus 3 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~Ge~~----------~~~~~~--~~ 60 (384)
T 2pgw_A 3 LVKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTV----------GIGECT----------VAPDQT--GT 60 (384)
T ss_dssp -CCEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCE----------EEEEEE----------CTTCHH--HH
T ss_pred CCEEEEEEEEEEecccCccceeccceeeeceEEEEEEEECCCCE----------EEEccC----------CCchHH--HH
Confidence 6799999998772 3333 357999999999984 999985 122 23 56
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHH-HHhhhccCCCCc---h-hhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCc
Q 011677 111 KNINERISEALVGMDPILQSQIDQA-MIDLDKTEKKGE---L-GANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNL 185 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~-l~~~~~~~~~~~---~-g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~ 185 (479)
..|++.++|.|+|+||.+++.+|+. |++ .+.+.++ . ..+|++|||+||||+.||..|+|||++||| ..+.
T Consensus 61 ~~i~~~l~~~l~g~d~~~~~~~~~~~l~~--~~~~~g~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~~~~ 135 (384)
T 2pgw_A 61 AAILYRLAKHLVGHSPHDVAPLIARIFHQ--EYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGG---AHRK 135 (384)
T ss_dssp HHHHHHHHGGGTTSCGGGHHHHHHHHHHH--HTGGGTCCCHHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTC---CSSS
T ss_pred HHHHHHHHHHHCCCChhHHHHHHHHHHHH--HhhhcccccccccHHHHHHHHHHHHHHHHhHcCCCHHHHcCC---CCCC
Confidence 6687789999999999999999998 853 1212222 1 468999999999999999999999999998 3234
Q ss_pred ccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHH
Q 011677 186 TLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREG 265 (479)
Q Consensus 186 ~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~ 265 (479)
+ +|+|.+++++ +.++ ..+++.+...++|+.+| .|.| + +.+.+.+.
T Consensus 136 ~--v~~~~~~~~~-------~~e~---------~~~~a~~~~~~Gf~~iK----ik~g----------~---~~~~~~e~ 180 (384)
T 2pgw_A 136 A--VGYFYFLQGE-------TAEE---------LARDAAVGHAQGERVFY----LKVG----------R---GEKLDLEI 180 (384)
T ss_dssp E--EEBCEECCCS-------SHHH---------HHHHHHHHHHTTCCEEE----EECC----------S---CHHHHHHH
T ss_pred c--eEEEEECCCC-------CHHH---------HHHHHHHHHHcCCCEEE----ECcC----------C---CHHHHHHH
Confidence 4 5556554321 1222 23344444444454444 2322 1 12223444
Q ss_pred HHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHH
Q 011677 266 LDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE 344 (479)
Q Consensus 266 l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~ 344 (479)
++.||+ .+| + ..+ +|++ +.||.++++++. +.+++|++.|||||++++|++
T Consensus 181 v~avr~---a~g-d-~~l~vD~n-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~ 231 (384)
T 2pgw_A 181 TAAVRG---EIG-D-ARLRLDAN-----------------------EGWSVHDAINMC-RKLEKYDIEFIEQPTVSWSIP 231 (384)
T ss_dssp HHHHHT---TST-T-CEEEEECT-----------------------TCCCHHHHHHHH-HHHGGGCCSEEECCSCTTCHH
T ss_pred HHHHHH---HcC-C-cEEEEecC-----------------------CCCCHHHHHHHH-HHHHhcCCCEEeCCCChhhHH
Confidence 444444 346 5 456 8873 356889999875 568999999999999999999
Q ss_pred HHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCC
Q 011677 345 HTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGET 423 (479)
Q Consensus 345 g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get 423 (479)
++++|++++ +||++||... ++++++++++.+++|+| ++|++++||+|++++++++|+++|++++++ ++.|+
T Consensus 232 ~~~~l~~~~~iPI~~de~i~-~~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~-~~~es 303 (384)
T 2pgw_A 232 AMAHVREKVGIPIVADQAAF-TLYDVYEICRQRAADMI------CIGPREIGGIQPMMKAAAVAEAAGLKICIH-SSFTT 303 (384)
T ss_dssp HHHHHHHHCSSCEEESTTCC-SHHHHHHHHHTTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCCEEEC-CCSCC
T ss_pred HHHHHHhhCCCCEEEeCCcC-CHHHHHHHHHcCCCCEE------EEcchhhCCHHHHHHHHHHHHHCCCeEeec-cCcCC
Confidence 999999999 9999999864 69999999999999999 999999999999999999999999998665 55787
Q ss_pred chh--HHHHhHhhcC
Q 011677 424 EDS--FIADLSVGLA 436 (479)
Q Consensus 424 ~d~--~~~dlAv~~~ 436 (479)
..+ +.+|||.++.
T Consensus 304 ~i~~aa~~hlaaa~~ 318 (384)
T 2pgw_A 304 GITTCAEHHIGLAIP 318 (384)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCC
Confidence 665 4667776653
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=336.29 Aligned_cols=318 Identities=11% Similarity=0.054 Sum_probs=215.7
Q ss_pred HHHHHHhhhcC--CceeeEEEEEEEecC-------CC-----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCC
Q 011677 33 LFISNHMRKAV--PSVITKIKARQILDS-------RG-----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDK 98 (479)
Q Consensus 33 ~~l~~~~~~~~--~~~I~~I~~~~i~ds-------~g-----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~ 98 (479)
|.-..||.+.+ +|+|++|+++.+.-. .| ...+.|+|+|++|++ |+||+.
T Consensus 14 ~~~~~~~~~~~~~~mkIt~i~~~~v~~p~~p~~~~~g~~~~~~~~~~V~v~td~G~~----------G~GE~~------- 76 (445)
T 3vdg_A 14 GTENLYFQSMAHNRIRITGARVTPVAFADPPLLNTVGVHQPYALRAVIQLDTDAGLT----------GLGETY------- 76 (445)
T ss_dssp --------CCGGGCCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEC-------
T ss_pred CcccccccccCCCCCEEEEEEEEEEecCCccccccccccccceeEEEEEEEECCCCe----------EEEeCC-------
Confidence 33445565533 689999999998422 11 234889999999994 999973
Q ss_pred CccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh-ccC------CCC-----chhhhHHHHHHHHHHHHHHH
Q 011677 99 GTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD-KTE------KKG-----ELGANAILAVSIAACKAGAA 166 (479)
Q Consensus 99 ~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~-~~~------~~~-----~~g~~A~~AvsiAl~da~ak 166 (479)
+++ .....| +.++|.|+|+||.+.+++|+.|.+.. +.. .++ .+...|++|||+||||+.||
T Consensus 77 ---g~~---~~~~~i-~~l~p~LiG~d~~~ie~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAiD~ALwDl~gK 149 (445)
T 3vdg_A 77 ---ADT---VHLERL-QAAAHAIVGRSVFSTNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQ 149 (445)
T ss_dssp ---CCH---HHHHHH-HHHHHHHTTCBTTCHHHHHHHHHHHHTSCCCSCCTTTTTTSCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ---ChH---HHHHHH-HHHHHHhCCCChhhHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHH
Confidence 222 233345 46999999999999999999998742 111 011 14457999999999999999
Q ss_pred hcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHH-HHHHHHHHHHhhhCCC
Q 011677 167 EKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSE-TYHHLKAVIAEKYGAH 245 (479)
Q Consensus 167 ~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e-~~~~lk~~l~~K~G~~ 245 (479)
.+|+|||+|||| ..+.++|+..|....-. ..++..+ .....+...+...+++.+...+ +|+++| .|.|
T Consensus 150 ~~g~Pv~~LLGG---~~r~~v~~~a~~~~~~~-~~~g~~~-~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG-- 218 (445)
T 3vdg_A 150 VTGRPVSDLLGG---AVRDAVPFSAYLFYKWA-AHPGAEP-DGWGAALDPDGIVAQARRMIDEYGFSAIK----LKGG-- 218 (445)
T ss_dssp HHTCBGGGGTTC---CSSSEEEBCEEEECBCS-SSTTSCC-CSSCCBCSHHHHHHHHHHHHHHHCCSSEE----EECS--
T ss_pred HcCCcHHHHhCC---CCCCeEEEeeeeccccc-ccCCccc-cccccCCCHHHHHHHHHHHHHhcCCCEEE----ECCC--
Confidence 999999999998 44567777544321100 0000000 0000000111223333333332 555554 4533
Q ss_pred CcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHH
Q 011677 246 GCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKE 324 (479)
Q Consensus 246 ~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ 324 (479)
. .+.+++.++++.||+++ .+ ..| +|+| +.||.++++++. +
T Consensus 219 --------~--~~~~~Di~~v~avRea~----~d-~~L~vDaN-----------------------~~w~~~~Ai~~~-~ 259 (445)
T 3vdg_A 219 --------V--FAPEEEMAAVEALRAAF----PD-HPLRLDPN-----------------------AAWTPQTSVKVA-A 259 (445)
T ss_dssp --------S--SCHHHHHHHHHHHHHHC----TT-SCEEEECT-----------------------TCSCHHHHHHHH-H
T ss_pred --------C--CCHHHHHHHHHHHHHhC----CC-CcEEEECC-----------------------CCCCHHHHHHHH-H
Confidence 1 11233455555565555 22 356 9983 467899999875 4
Q ss_pred HHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHH
Q 011677 325 LCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEV 403 (479)
Q Consensus 325 ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i 403 (479)
.+++| +.|||||++ |++++++|++++ +||++||+. +++++++++++.+++|++ ++|++++||||+++++
T Consensus 260 ~L~~~-l~~iEeP~~--~~~~~~~l~~~~~iPIa~dE~~-~~~~~~~~~l~~~a~div------~~d~~~~GGitea~ki 329 (445)
T 3vdg_A 260 GLEGV-LEYLEDPTP--GLDGMAEVAAQAPMPLATNMCV-VAFDQLPAAVAKNSVQVV------LSDHHYWGGLQRSRLL 329 (445)
T ss_dssp HTTTT-CSEEECCSS--SHHHHHHHHHHCSSCEEESSSC-CSGGGHHHHHHHTCCSEE------EECHHHHTSHHHHHHH
T ss_pred HHhhH-HHeeeCCCC--CHHHHHHHHhcCCCCEEcCCcC-CCHHHHHHHHHcCCCCEE------eeCcceeCCHHHHHHH
Confidence 57999 999999995 899999999999 999999975 569999999999999999 9999999999999999
Q ss_pred HHHHhhCCCeEEEecCCCCCchh--HHHHhHhhc
Q 011677 404 VKLANDVPWGVVISHRSGETEDS--FIADLSVGL 435 (479)
Q Consensus 404 ~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~~ 435 (479)
+++|+++|+++ ++|...|+..+ +.+|||.++
T Consensus 330 a~lA~~~gv~v-~~h~~~e~~i~~aa~~hlaaa~ 362 (445)
T 3vdg_A 330 AGICDTFGLGL-SMHSNSHLGISLAAMVHLAAAT 362 (445)
T ss_dssp HHHHHHHTCEE-EECCCSCCHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCEE-EEeCCcchHHHHHHHHHHHHhC
Confidence 99999999996 56777776554 455777654
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=333.83 Aligned_cols=306 Identities=14% Similarity=0.117 Sum_probs=213.4
Q ss_pred CceeeEEEEEEEec-------CCC-----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQILD-------SRG-----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~d-------s~g-----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+++.+.- +.| ...+.|+|+|++|++ |+||+. +++ ....
T Consensus 22 ~mkI~~i~~~~v~~P~~~~~~~~g~~~~~~~~~~V~v~td~G~~----------G~GE~~----------g~~---~v~~ 78 (441)
T 3vc5_A 22 SMLIREVRVTPVAFRDPPLLNAAGVHQPWALRTIVEVVTDEGIT----------GLGETY----------GDL---AHLE 78 (441)
T ss_dssp -CBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTCCE----------EEEEEE----------CCH---HHHH
T ss_pred CcEEEEEEEEEEecCCcccccccCccccceeEEEEEEEECCCCE----------EEEeCC----------ChH---HHHH
Confidence 78999999999842 222 234899999999994 999974 222 2333
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhh-cc------CCCC-----chhhhHHHHHHHHHHHHHHHhcCchhHHHHhcc
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLD-KT------EKKG-----ELGANAILAVSIAACKAGAAEKEVPLYKHIADL 179 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~-~~------~~~~-----~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~ 179 (479)
.| +.++|.|+|+||.+.+++|+.|.+.. +. +.++ .+...|++|||+||||+.||.+|+|||+||||
T Consensus 79 ~i-~~l~p~LiG~d~~~~e~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG- 156 (441)
T 3vc5_A 79 QV-RAAAARLPGLDVYALHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVADLLGG- 156 (441)
T ss_dssp HH-HHHHHTCTTSBTTCHHHHHHHHHHHHTTCCCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTC-
T ss_pred HH-HHHHHHhCCCChhHHHHHHHHHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC-
Confidence 45 46999999999999999999998642 11 0011 03457999999999999999999999999998
Q ss_pred cCCCCcccccceEEeecCCccCCC-cccccceeeccCCCCcHHHHHHHHHH-HHHHHHHHHHhhhCCCCcccCCCCCCCC
Q 011677 180 AGKTNLTLPVPAFTVISGGKHAGN-NLAIQDIMILPIGASSFGEALQMGSE-TYHHLKAVIAEKYGAHGCNVGEDGGLAP 257 (479)
Q Consensus 180 ~~~~~~~~Pvp~~~~i~GG~~~~~-~l~~~e~~i~p~~~~~~~ea~~~~~e-~~~~lk~~l~~K~G~~~~~vg~~G~~~~ 257 (479)
..+.++|+..|....-..+.+. ....- .+...+...+++.+...+ +|+.+| .|.| . .
T Consensus 157 --~~rd~v~~~a~~~~~~~~~~g~~~~~~~---~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG----------~--~ 215 (441)
T 3vc5_A 157 --KVRDAVPYSAYLFYKWAGHPGKPEDRFG---PALDPDGIVAQARLLIGEYGFRSIK----LKGG----------V--F 215 (441)
T ss_dssp --CSSSEEEBCEEEECBCSBCTTSCBCTTC---CBCSHHHHHHHHHHHHHHHCCSSEE----EECS----------S--S
T ss_pred --CCCCeEEEEEeeccccccCCCccccccc---cCCCHHHHHHHHHHHHHhcCCCEEE----EccC----------C--C
Confidence 4456777754432110000000 00000 000111223333333332 555544 4533 1 1
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeec
Q 011677 258 NISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIED 336 (479)
Q Consensus 258 ~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEd 336 (479)
+.+++.+++++||+++ .+ .+| +|+| +.||.++++++. +.+++| +.||||
T Consensus 216 ~~~~Di~rv~avRea~----pd-~~L~vDaN-----------------------~~w~~~~Ai~~~-~~L~~~-l~~iEe 265 (441)
T 3vc5_A 216 PPEQEAEAIQALRDAF----PG-LPLRLDPN-----------------------AAWTVETSIRVG-RALDGV-LEYLED 265 (441)
T ss_dssp CHHHHHHHHHHHHHHS----TT-CCEEEECT-----------------------TCSCHHHHHHHH-HHTTTT-CSEEEC
T ss_pred CHHHHHHHHHHHHHhC----CC-CcEeccCC-----------------------CCCCHHHHHHHH-HHHHHH-HHHhhc
Confidence 1233455666666555 22 356 9983 467899999875 457999 999999
Q ss_pred CCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEE
Q 011677 337 PFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVV 415 (479)
Q Consensus 337 P~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~ 415 (479)
|++ |++++++|++++ +||++||+. +++++++++++.+++|++ |+|++++||||++++++++|+++|+++
T Consensus 266 P~~--~~~~~~~l~~~~~iPIa~dE~~-~~~~~~~~~l~~~a~dii------~~d~~~~GGitea~kia~lA~~~gv~v- 335 (441)
T 3vc5_A 266 PTP--GIDGMARVAAEVPMPLATNMCV-VTPEHLPAAVERRPIGVL------LIDHHYWGGLVRSAHIATLCATFGIEL- 335 (441)
T ss_dssp CSS--SHHHHHHHHTTSSSCEEESSSC-CSGGGHHHHHHHCCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCEE-
T ss_pred cCC--CHHHHHHHHhcCCCCEEeCCCC-CCHHHHHHHHHhCCCCEE------eechhhcCCHHHHHHHHHHHHHcCCEE-
Confidence 995 899999999999 999999975 569999999999999999 999999999999999999999999997
Q ss_pred EecCCCCCchh--HHHHhHhhc
Q 011677 416 ISHRSGETEDS--FIADLSVGL 435 (479)
Q Consensus 416 v~h~~get~d~--~~~dlAv~~ 435 (479)
+.|...|+..+ +.+|||.++
T Consensus 336 ~~h~~~e~~i~~aa~~hlaaa~ 357 (441)
T 3vc5_A 336 SMHSNSHLGISLAAMTHLAAAT 357 (441)
T ss_dssp EECCCSCCHHHHHHHHHHHHTC
T ss_pred EecCCcccHHHHHHHHHHHHhC
Confidence 45767776554 445776654
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=332.97 Aligned_cols=300 Identities=17% Similarity=0.157 Sum_probs=218.4
Q ss_pred CceeeEEEEEEEe------cCC----CCceEEEEEEeC---CCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHH
Q 011677 44 PSVITKIKARQIL------DSR----GIPTVEVDLFTH---KGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAV 110 (479)
Q Consensus 44 ~~~I~~I~~~~i~------ds~----g~~~v~V~v~t~---~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av 110 (479)
+|+|++|+...+- ++. .++++.|+|+|+ +|++ |+||+.. .+.++++ .
T Consensus 5 ~mkI~~i~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~~~~G~~----------G~GE~~~-------~~~~~~~---~ 64 (392)
T 1tzz_A 5 SVRIVDVREITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKR----------VVGYGFN-------SNGRYGQ---G 64 (392)
T ss_dssp -CCEEEEEEEEEECCC---------CCCEEEEEEEEEEEECSSSE----------EEEEEEC-------CTTSCCC---H
T ss_pred CcEEeEEEEEEecCCCcccccccccCcceEEEEEEEECCCCCCCE----------EEEEecC-------CCchHHH---H
Confidence 4799999965552 121 245799999999 9984 9999864 1233333 3
Q ss_pred HHHHHHHHHhhcCCCC----------CCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHh---
Q 011677 111 KNINERISEALVGMDP----------ILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIA--- 177 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~----------~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLg--- 177 (479)
..+++.++|.|+|+|+ .+++.+|+.|.+.....+++ +..+|++|||+||||+.||..|+|||++||
T Consensus 65 ~~i~~~l~~~l~G~d~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~a~~aid~AlwDl~ak~~g~Pl~~llG~~~ 143 (392)
T 1tzz_A 65 GLIRERFASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHG-ERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERH 143 (392)
T ss_dssp HHHHHTHHHHHHTSCGGGSBCTTSSSBCHHHHHHHHTTTCCSCCCS-HHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCchhhhcccccccCHHHHHHHHHHhccccCcc-HHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCcc
Confidence 4466679999999999 99999999998755443433 678999999999999999999999999999
Q ss_pred -cccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCC
Q 011677 178 -DLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLA 256 (479)
Q Consensus 178 -g~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~ 256 (479)
| .. +.++|+|++ +|+.|.+ .+.+ ...+++.+...++|+.+| .|. |.
T Consensus 144 ~g---~~--~~~v~~y~~-~~~~~~~--~~~~---------~~~~~a~~~~~~Gf~~iK----ik~-------g~----- 190 (392)
T 1tzz_A 144 GV---KA--NPRVFVYAA-GGYYYPG--KGLS---------MLRGEMRGYLDRGYNVVK----MKI-------GG----- 190 (392)
T ss_dssp TS---CC--CCEEEEEEE-CCCC------CHH---------HHHHHHHHHHTTTCSEEE----EEC-------SS-----
T ss_pred CC---Cc--CCCeeEEEe-CCcccCC--CCHH---------HHHHHHHHHHHcCCCEEE----EcC-------CC-----
Confidence 6 22 335666775 3332221 0111 123333333334444443 232 21
Q ss_pred CCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeee
Q 011677 257 PNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIE 335 (479)
Q Consensus 257 ~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iE 335 (479)
.+.+.+.+.++.||+++ |.+ ..+ +|+| +.||.+++++++. .+++|+|.|||
T Consensus 191 ~~~~~~~e~v~avr~a~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~~i~~iE 242 (392)
T 1tzz_A 191 APIEEDRMRIEAVLEEI---GKD-AQLAVDAN-----------------------GRFNLETGIAYAK-MLRDYPLFWYE 242 (392)
T ss_dssp SCHHHHHHHHHHHHHHH---TTT-CEEEEECT-----------------------TCCCHHHHHHHHH-HHTTSCCSEEE
T ss_pred CCHHHHHHHHHHHHHhc---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HHHHcCCCeec
Confidence 12334456666666666 644 456 8883 3578899998865 48999999999
Q ss_pred cCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCC----CCceecccCCCCcCccccccHHHHHHHHHHHhhC
Q 011677 336 DPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIP----LAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDV 410 (479)
Q Consensus 336 dP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~----a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~ 410 (479)
||++++|+++|++|++++ +||++||+. +++++++++++.+ ++|++ ++|++++||||++++++++|+++
T Consensus 243 qP~~~~d~~~~~~l~~~~~iPIa~dE~~-~~~~~~~~~i~~~~~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~ 315 (392)
T 1tzz_A 243 EVGDPLDYALQAALAEFYPGPMATGENL-FSHQDARNLLRYGGMRPDRDWL------QFDCALSYGLCEYQRTLEVLKTH 315 (392)
T ss_dssp CCSCTTCHHHHHHHTTTCCSCEEECTTC-CSHHHHHHHHHHSCCCTTTCEE------CCCTTTTTCHHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHhhCCCCEEECCCC-CCHHHHHHHHHcCCCccCCcEE------EECccccCCHHHHHHHHHHHHHC
Confidence 999999999999999999 999999976 6699999999999 99999 99999999999999999999999
Q ss_pred CCe---EEEecCCCCCchhHHHHhHhhcCC
Q 011677 411 PWG---VVISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 411 g~~---~~v~h~~get~d~~~~dlAv~~~~ 437 (479)
|++ +++++ . + ...+|++.++..
T Consensus 316 gi~~~~~~~~~-~---~-~~~~hl~aa~~~ 340 (392)
T 1tzz_A 316 GWSPSRCIPHG-G---H-QMSLNIAAGLGL 340 (392)
T ss_dssp TCCGGGBCCSC-C---B-HHHHHHHHHHTC
T ss_pred CCCCceEeecH-H---H-HHHHHHHHhCCC
Confidence 999 87652 1 1 123788877754
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=333.49 Aligned_cols=288 Identities=19% Similarity=0.177 Sum_probs=212.2
Q ss_pred CceeeEEEEEEEecCC--------------CCceEEEEEEeCC--CceeeecCCCCCCCceeeeeeccCCCCccccccHH
Q 011677 44 PSVITKIKARQILDSR--------------GIPTVEVDLFTHK--GMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVN 107 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~--------------g~~~v~V~v~t~~--G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~ 107 (479)
||+|++|+++.+.-.. ...++.|+|+|++ |++ |+||+... |.+.+
T Consensus 1 mmkI~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~~~V~v~td~~~G~~----------G~Ge~~~~---------g~~~~ 61 (441)
T 2hxt_A 1 MRTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLA----------GYGLVFTI---------GRGND 61 (441)
T ss_dssp -CBEEEEEEEEEECCGGGTTTTCCSSCSSCCCEEEEEEEEESSCTTCE----------EEEEEEEC---------STTHH
T ss_pred CCcEEEEEEEEEEecCCCCcCcccccccCCCcceEEEEEEECCCCCCE----------EEEeecCC---------CCCcH
Confidence 7899999999883110 1246999999998 984 99998653 11233
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHH----HHHHHHhhhccCCC---CchhhhHHHHHHHHHHHHHHHhcCchhHHHHhccc
Q 011677 108 RAVKNINERISEALVGMDPILQSQ----IDQAMIDLDKTEKK---GELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180 (479)
Q Consensus 108 ~av~~i~~~l~p~LiG~d~~~~~~----id~~l~~~~~~~~~---~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~ 180 (479)
.+...++ .++|.|+|+|+.+++. +|+.|...+.+.+. .++..+|++|||+||||++||..|+|||+||||.
T Consensus 62 ~v~~~i~-~l~~~liG~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGG~- 139 (441)
T 2hxt_A 62 VQTAAVA-ALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAEL- 139 (441)
T ss_dssp HHHHHHH-TTHHHHTTCBHHHHHHCHHHHHHHHHTCHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTS-
T ss_pred HHHHHHH-HHHHHHcCCChHHHHhhHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCC-
Confidence 3344454 6899999999998764 67777542211111 2334689999999999999999999999999983
Q ss_pred CCCCc---------------------------------------ccccceEEeecCCccCCCcccccceeeccCCCCcHH
Q 011677 181 GKTNL---------------------------------------TLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFG 221 (479)
Q Consensus 181 ~~~~~---------------------------------------~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ 221 (479)
.+. +-++|+|++..|+. + .+.+ ...+
T Consensus 140 --~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~vp~y~~~~g~~--~--~~~e---------~~~~ 204 (441)
T 2hxt_A 140 --TPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWL--G--YSDE---------KLVR 204 (441)
T ss_dssp --CHHHHHHHCCCTTCTTTCCHHHHHHHHHHHGGGHHHHHHHHHHHCEEEEEEEEECT--T--SCHH---------HHHH
T ss_pred --CcccccccccccccccccchhhhhhhhhcccccchhhhhhcccCCcceeEeccccc--C--CCHH---------HHHH
Confidence 111 13678888654431 1 1222 2344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeec
Q 011677 222 EALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDL 300 (479)
Q Consensus 222 ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~ 300 (479)
++.+...++|+.+| .|.| . +.+.+.+.++.||+++ |.+ ..| +|+|
T Consensus 205 ~a~~~~~~Gf~~vK----ik~g-------~------~~~~d~e~v~avR~a~---G~d-~~l~vDan------------- 250 (441)
T 2hxt_A 205 LAKEAVADGFRTIK----LKVG-------A------NVQDDIRRCRLARAAI---GPD-IAMAVDAN------------- 250 (441)
T ss_dssp HHHHHHHTTCSEEE----EECC-------S------CHHHHHHHHHHHHHHH---CSS-SEEEEECT-------------
T ss_pred HHHHHHHcCCCEEE----EccC-------C------CHHHHHHHHHHHHHhc---CCC-CeEEEECC-------------
Confidence 55555555665555 3422 1 1334456677777666 644 456 8883
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 301 DFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.+++++++. .+++|+|.|||||++++|+++|++|++++ +||++||+ ++++++++++++.+++
T Consensus 251 ----------~~~~~~~a~~~~~-~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~~iPIa~dE~-~~~~~~~~~~i~~~~~ 318 (441)
T 2hxt_A 251 ----------QRWDVGPAIDWMR-QLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEH-TQNRVVFKQLLQAGAV 318 (441)
T ss_dssp ----------TCCCHHHHHHHHH-TTGGGCCSCEECCSCTTCHHHHHHHHHHHTTSCEEECTT-CCSHHHHHHHHHHTCC
T ss_pred ----------CCCCHHHHHHHHH-HHHhcCCCeeeCCCCHHHHHHHHHHHhhCCCCCEEEeCC-cCCHHHHHHHHHcCCC
Confidence 3578899998764 58999999999999999999999999996 99999997 4679999999999999
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCC
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRS 420 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ 420 (479)
|+| ++|++++||||++++++++|+++|+++ ++|++
T Consensus 319 d~v------~ik~~~~GGite~~~ia~~A~~~g~~~-~~h~~ 353 (441)
T 2hxt_A 319 DLI------QIDAARVGGVNENLAILLLAAKFGVRV-FPHAG 353 (441)
T ss_dssp SEE------CCCTTTSSHHHHHHHHHHHHHHTTCEE-CCCCC
T ss_pred CEE------EeCcceeCCHHHHHHHHHHHHHcCCeE-EEecC
Confidence 999 999999999999999999999999997 57865
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=320.99 Aligned_cols=299 Identities=17% Similarity=0.188 Sum_probs=215.8
Q ss_pred CceeeEEEEEEEe----c-----CCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHH
Q 011677 44 PSVITKIKARQIL----D-----SRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAV 110 (479)
Q Consensus 44 ~~~I~~I~~~~i~----d-----s~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av 110 (479)
.|+|++|+++.+- . +.| +.++.|+|+|++|++ ||||+.++. +.|.......+.
T Consensus 9 sMKI~~I~~~~~~lPl~~~p~~~a~g~~~~~~~~lV~v~td~G~~----------G~GE~~~~~----~~~~~~~~~~~~ 74 (376)
T 4h2h_A 9 SLKIAEIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTI----------GWGETCPVG----PTYAEAHAGGAL 74 (376)
T ss_dssp CCBEEEEEEEEEEEEBTTCCBCCTTCCBSEEEEEEEEEEETTSCE----------EEEEECCSS----SSSSSCCHHHHH
T ss_pred CeEEeEEEEEEEecccCCCCeEecCEEEEEEEEEEEEEEECCCCE----------EEEeecCCC----CCcchhhHHHHH
Confidence 5699999999873 1 222 357999999999994 999987642 345555555554
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccc
Q 011677 111 KNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVP 190 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp 190 (479)
. +.+.+.|.|+|+|+.+.+..+.....+. +. ..|++|||+||||+.||.+|+|||++||| ..+.++|+
T Consensus 75 ~-~~~~l~~~l~g~d~~~~~~~~~~~~~~~-----~~--~~A~said~ALwDl~gK~~g~Pl~~LLGG---~~r~~v~~- 142 (376)
T 4h2h_A 75 A-ALEVLASGLAGAEALPLPLHTRMDSLLC-----GH--NYAKSALDIAVHDLWGKRLGVPVHELLGG---ALTDSVSS- 142 (376)
T ss_dssp H-HHHHHHHTTTTCBSSHHHHHHHHHHHCS-----CC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTC---CSCSEEEC-
T ss_pred H-HHHHHHHHhcCCccCcHHHHHHHHHhhc-----cc--HHHHHHHHHhhhHHHHHhcCCCceecCCC---CcCCceeE-
Confidence 4 4467999999999998765444332222 11 46999999999999999999999999998 44455555
Q ss_pred eEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 191 AFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 191 ~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
|..++.. + .....+++.+...++|+.+| .|.|. .+.+.+.+.++.+|
T Consensus 143 -y~s~~~~-------~---------~~~~~~~a~~~~~~G~~~~K----iKvg~------------~~~~~di~~v~~vr 189 (376)
T 4h2h_A 143 -YYSLGVM-------E---------PDEAARQALEKQREGYSRLQ----VKLGA------------RPIEIDIEAIRKVW 189 (376)
T ss_dssp -EEEECSC-------C---------HHHHHHHHHHHHHHTCSEEE----EECCS------------SCHHHHHHHHHHHH
T ss_pred -eeecccC-------C---------HHHHHHHHHHHHhcCceEEE----EecCC------------CCHHHHHHHHHHHH
Confidence 5443221 1 12234555555556666555 45331 11223445555555
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L 349 (479)
+++. |.+ .++ +|+| +.||.++++++. +.++++++ |||||++ +++++++|
T Consensus 190 ~a~~--g~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~~-~iEeP~~--~~~~~~~l 239 (376)
T 4h2h_A 190 EAVR--GTG-IALAADGN-----------------------RGWTTRDALRFS-RECPDIPF-VMEQPCN--SFEDLEAI 239 (376)
T ss_dssp HHHT--TSC-CEEEEECT-----------------------TCCCHHHHHHHH-HHCTTSCE-EEESCSS--SHHHHHHH
T ss_pred hhcc--CCe-eEEEEeec-----------------------cCCCHHHHHHHH-HHHhhccc-cccCCcc--hhhhHhhh
Confidence 5552 544 456 8984 367889999875 45788987 9999995 68899999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--h
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--S 426 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~ 426 (479)
++.+ +||++||+.. ++++++++++.+++|++ |+|++++||+|++++++++|+++|++++++|+. ++.. +
T Consensus 240 ~~~~~~pia~dE~~~-~~~~~~~~~~~~~~d~v------~~d~~~~GGit~~~~ia~~a~~~gi~~~~~~~~-~~~i~~a 311 (376)
T 4h2h_A 240 RPLCHHALYMDEDGT-SLNTVITAAATSLVDGF------GMKVSRIGGLQHMRAFRDFCAARNLPHTCDDAW-GGDIVSA 311 (376)
T ss_dssp GGGCCSCEEESTTCC-SHHHHHHHHHTTCCSEE------CCBHHHHTSHHHHHHHHHHHHHHTCCEECBCSS-CSHHHHH
T ss_pred hhcccCccccCcccC-CHHHHHHHHHhhccCcc------ccccceeCCcHHHHHHHHHHHHcCCCEEeCCCC-ccHHHHH
Confidence 9999 9999999764 59999999999999999 999999999999999999999999998765543 4433 4
Q ss_pred HHHHhHhhcCCCC
Q 011677 427 FIADLSVGLASGQ 439 (479)
Q Consensus 427 ~~~dlAv~~~~~~ 439 (479)
+.+|+|.+....+
T Consensus 312 a~~hlaa~~~~~~ 324 (376)
T 4h2h_A 312 ACTHIASTVLPRL 324 (376)
T ss_dssp HHHHHHTTSCGGG
T ss_pred HHHHHHHhCCccc
Confidence 5667776654433
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=329.61 Aligned_cols=305 Identities=11% Similarity=0.074 Sum_probs=212.5
Q ss_pred CceeeEEEEEEEecC-------CC-----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQILDS-------RG-----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds-------~g-----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+++.+.-. .| ...+.|+|+|++ + +|+||+. +++ .+..
T Consensus 26 ~mkIt~i~~~~v~~p~~p~~~~~g~~~~~~~~~~V~v~td~-~----------~G~GE~~----------g~~---~~~~ 81 (445)
T 3va8_A 26 RSIIKEIVITPVAFHDMPLLNSVGVHEPFALRSIIEIITED-S----------YGLGESY----------GDS---AHLD 81 (445)
T ss_dssp HTBCCEEEEEEEEEECCCBEETTEECCSEEEEEEEEEECSS-C----------EEEEEEE----------CCH---HHHH
T ss_pred CCEEEEEEEEEEecCCcccccccCcccCceeEEEEEEEECC-C----------EEEEecC----------CcH---HHHH
Confidence 579999999988422 21 234889999999 8 4999973 222 2333
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhh-ccC-----CCCc------hhhhHHHHHHHHHHHHHHHhcCchhHHHHhcc
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLD-KTE-----KKGE------LGANAILAVSIAACKAGAAEKEVPLYKHIADL 179 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~-~~~-----~~~~------~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~ 179 (479)
.| +.++|.|+|+||.+.+++|+.|.+.. +.. +..+ +...|++|||+||||+.||.+|+|||+||||
T Consensus 82 ~i-~~l~p~LiG~d~~~ie~i~~~l~~~~~~~~~~~~~G~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG- 159 (445)
T 3va8_A 82 RL-QKAADKIKGLSVYSTNVIYQRCVESLRNDTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVSDLLGG- 159 (445)
T ss_dssp HH-HHHHHHHTTSBTTCHHHHHHHHHHHTTTCCC--CCSSTTSSCCSCHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTC-
T ss_pred HH-HHHHHHHCCCChhHHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC-
Confidence 45 46999999999999999999998742 110 0111 4568999999999999999999999999998
Q ss_pred cCCCCcccccceEEeecCCccCCC-cccccceeeccCCCCcHHHHHHHHHH-HHHHHHHHHHhhhCCCCcccCCCCCCCC
Q 011677 180 AGKTNLTLPVPAFTVISGGKHAGN-NLAIQDIMILPIGASSFGEALQMGSE-TYHHLKAVIAEKYGAHGCNVGEDGGLAP 257 (479)
Q Consensus 180 ~~~~~~~~Pvp~~~~i~GG~~~~~-~l~~~e~~i~p~~~~~~~ea~~~~~e-~~~~lk~~l~~K~G~~~~~vg~~G~~~~ 257 (479)
..+.++|+..+....-..+.+. .... ..+...+...+++.+...+ +|+++| .|.| . .
T Consensus 160 --~~r~~v~~~a~~~y~~~~~~g~~~~~~---~~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG----------~--~ 218 (445)
T 3va8_A 160 --RVRDSVQYSAYLFYKWGGHPGDEDDEY---GPALDPEGVVKQAKKIIDEYGFKAIK----LKGG----------V--F 218 (445)
T ss_dssp --CSSSEEEBCEEEECBCSSSTTSCCCTT---CCBCSHHHHHHHHHHHHHHHCCSCEE----EECS----------S--S
T ss_pred --CCCCeEEEeeeeccccccccccccccc---ccCCCHHHHHHHHHHHHHhcCCCEEE----EccC----------C--C
Confidence 4456777754432110000000 0000 0000111223333333332 555544 4433 1 1
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeec
Q 011677 258 NISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIED 336 (479)
Q Consensus 258 ~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEd 336 (479)
+.+++.++++.||+++ .+ ..| +|+| +.||.++++++. +.+++| +.||||
T Consensus 219 ~~~~Di~~v~avRea~----~~-~~L~vDaN-----------------------~~w~~~~Ai~~~-~~L~~~-l~~iEe 268 (445)
T 3va8_A 219 PPADEVAAIKALHKAF----PG-VPLRLDPN-----------------------AAWTVETSKWVA-KELEGI-VEYLED 268 (445)
T ss_dssp CHHHHHHHHHHHHHHS----TT-CCEEEECT-----------------------TCBCHHHHHHHH-HHTTTT-CSEEES
T ss_pred CHHHHHHHHHHHHHhC----CC-CcEeeeCC-----------------------CCCCHHHHHHHH-HHHhhh-cCeEee
Confidence 1233455566666555 22 356 9983 467899999875 457999 999999
Q ss_pred CCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEE
Q 011677 337 PFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVV 415 (479)
Q Consensus 337 P~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~ 415 (479)
|++ |++++++|++++ +||++||+. +++++++++++.+++|++ ++|++++||||++++++++|+++|+++
T Consensus 269 P~~--d~~~~~~l~~~~~iPIa~dE~~-~~~~~~~~~i~~~a~div------~~d~~~~GGitea~kia~lA~~~gv~v- 338 (445)
T 3va8_A 269 PAG--EIEGMAAVAKEASMPLATNMAV-VAFDHLPPSILQDAVQVI------LSDHHFWGGLRKSQTLASICATWGLRL- 338 (445)
T ss_dssp CBS--HHHHHHHHHTTCSSCEEESSSC-CSGGGHHHHHHTTCCSEE------EECHHHHTSHHHHHHHHHHHHHHTCEE-
T ss_pred cCc--CHHHHHHHHHcCCCCEEeCCcc-CCHHHHHHHHHcCCCCEE------EecchhcCCHHHHHHHHHHHHHcCCEE-
Confidence 984 899999999999 999999975 569999999999999999 999999999999999999999999996
Q ss_pred EecCCCCCchh--HHHHhHhhc
Q 011677 416 ISHRSGETEDS--FIADLSVGL 435 (479)
Q Consensus 416 v~h~~get~d~--~~~dlAv~~ 435 (479)
+.|...|+..+ +.+|||.++
T Consensus 339 ~~h~~~e~~I~~aa~~hlaaa~ 360 (445)
T 3va8_A 339 SMHSNSHLGISLAAMTHLASAT 360 (445)
T ss_dssp EECCCSCCHHHHHHHHHHHHTC
T ss_pred EEeCCcccHHHHHHHHHHHHhC
Confidence 55777776654 445776554
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=327.80 Aligned_cols=294 Identities=15% Similarity=0.094 Sum_probs=209.8
Q ss_pred CceeeEEEEEEEe--------cC--CC-----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHH
Q 011677 44 PSVITKIKARQIL--------DS--RG-----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNR 108 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds--~g-----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~ 108 (479)
+|+|++|+.+.+. .+ ++ ++++.|+|+|+ |++ |+||+. |
T Consensus 11 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~V~v~td-G~~----------G~GE~~-----------g----- 63 (392)
T 3p3b_A 11 DWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQT----------GYGSSI-----------H----- 63 (392)
T ss_dssp TCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEE----------EEEECC-----------S-----
T ss_pred CCeEEEEEEEEEeccCCCcccccccccccCCCCcEEEEEEEEC-CCE----------EEEecc-----------c-----
Confidence 5799999998772 12 22 56799999999 984 999963 1
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccC-CC-Ccc
Q 011677 109 AVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAG-KT-NLT 186 (479)
Q Consensus 109 av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~-~~-~~~ 186 (479)
.|+ .++|.|+|+|+.+++++| +++..+|++|||+||||+.||..|+|||++|||... .. +.+
T Consensus 64 ---~i~-~l~p~l~G~d~~~~~~~~------------~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~~~~~~ 127 (392)
T 3p3b_A 64 ---MTP-EWAEDVIGRRLLDLFDDR------------GRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLV 127 (392)
T ss_dssp ---CCH-HHHHTTTTCBGGGGBCTT------------SCBCGGGHHHHHHHHHHHHHHHHTCBHHHHHC--------CEE
T ss_pred ---HHH-HHHHHhcCCCHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCccccccccCC
Confidence 355 689999999999887765 123468999999999999999999999999997211 11 234
Q ss_pred cccceEE--eecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHH
Q 011677 187 LPVPAFT--VISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIRE 264 (479)
Q Consensus 187 ~Pvp~~~--~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~ 264 (479)
+|+ |+ ...|+.+..+.++++|. ..+++.+...++|+.+| .| +|..++|.++..+.+.
T Consensus 128 vp~--~~s~~~~~~~~~~~~~~~~e~--------~~~~a~~~~~~Gf~~vK----ik-------~g~~~~~~~~~~~~~~ 186 (392)
T 3p3b_A 128 VPC--YDTSLYFDDLHLADERAAVAL--------MQEEAMQGYAKGQRHFK----IK-------VGRGGRHMPLWEGTKR 186 (392)
T ss_dssp EEE--EEEEECBTTTTCCSHHHHHHH--------HHHHHHHHHHTTCCCEE----EE-------CCHHHHTSCHHHHHHH
T ss_pred cce--eEeecccCCCCcccccchHHH--------HHHHHHHHHHhCCCEEE----EC-------cCcCcccCCccccHHH
Confidence 444 54 22221111111111121 23344444445555554 23 2322233322122344
Q ss_pred HHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCH
Q 011677 265 GLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343 (479)
Q Consensus 265 ~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~ 343 (479)
.++.|+++.+.+|.+ ..| +|++ +.||.+++++++.. +++|+|.|||||++ +|+
T Consensus 187 ~~e~v~avR~~~g~d-~~l~vDan-----------------------~~~~~~~ai~~~~~-l~~~~i~~iE~P~~-~d~ 240 (392)
T 3p3b_A 187 DIAIVRGISEVAGPA-GKIMIDAN-----------------------NAYNLNLTKEVLAA-LSDVNLYWLEEAFH-EDE 240 (392)
T ss_dssp HHHHHHHHHHHHCTT-CCEEEECT-----------------------TCCCHHHHHHHHHH-TTTSCEEEEECSSS-CCH
T ss_pred HHHHHHHHHHHhCCC-CeEEEECC-----------------------CCCCHHHHHHHHHH-HHhcCCCEEecCCc-ccH
Confidence 455554444445755 456 8883 35788999988654 89999999999999 999
Q ss_pred HHHHHHHhh-----h-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEe
Q 011677 344 EHTKSVLQI-----C-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 344 ~g~~~L~~~-----~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~ 417 (479)
++|++|+++ + +||++|| . +++++++++++.+++|++ ++|++++ |+|++++++++|+++|+++|+
T Consensus 241 ~~~~~l~~~l~~~g~~iPIa~dE-~-~~~~~~~~~i~~~~~d~v------~ik~~~~-Git~~~~i~~~A~~~gi~~~~- 310 (392)
T 3p3b_A 241 ALYEDLKEWLGQRGQNVLIADGE-G-LASPHLIEWATRGRVDVL------QYDIIWP-GFTHWMELGEKLDAHGLRSAP- 310 (392)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECC-S-SCCTTHHHHHHTTSCCEE------CCBTTTB-CHHHHHHHHHHHHHTTCEECC-
T ss_pred HHHHHHHHhhccCCCCccEEecC-C-CCHHHHHHHHHcCCCCEE------EeCcccc-CHHHHHHHHHHHHHcCCEEEe-
Confidence 999999999 8 9999999 5 569999999999999999 9999999 999999999999999999866
Q ss_pred cCCCCCchhHHHHhHhhcCCC
Q 011677 418 HRSGETEDSFIADLSVGLASG 438 (479)
Q Consensus 418 h~~get~d~~~~dlAv~~~~~ 438 (479)
| +.||..+++++++++...+
T Consensus 311 h-~~es~i~~~a~l~laa~~~ 330 (392)
T 3p3b_A 311 H-CYGNAYGIYASGHLSAAVR 330 (392)
T ss_dssp B-CCSCTHHHHHHHHHGGGCT
T ss_pred c-CCCCHHHHHHHHHHHHhCC
Confidence 7 7899988887777775444
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=326.90 Aligned_cols=310 Identities=13% Similarity=0.096 Sum_probs=213.8
Q ss_pred CceeeEEEEEEEecCCC------------CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQILDSRG------------IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g------------~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
.|+|++|+++.|.-+.. ...+.|+|+|++|++ |+||+.. ++. +..
T Consensus 4 ~~~It~v~~~~v~~~d~~~~~~~g~~~~~~~~~iV~v~td~Gi~----------G~GE~~~----------~~~---v~~ 60 (450)
T 3mzn_A 4 FPKITKMNVVPVAGEDGFLLNLSGGHEPWFIRCVLVLEDESGNR----------GVGEIPS----------SEG---ILN 60 (450)
T ss_dssp CCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEEC----------CHH---HHH
T ss_pred CCEEEEEEEEEecccCccccccccCCCCcceEEEEEEEECCCCE----------EEEeCCC----------cHH---HHH
Confidence 46999999999953211 124689999999994 9999732 222 334
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhh-cc--CCCC------chhhhHHHHHHHHHHHHHHHhcCchhHHHHh--ccc
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLD-KT--EKKG------ELGANAILAVSIAACKAGAAEKEVPLYKHIA--DLA 180 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~-~~--~~~~------~~g~~A~~AvsiAl~da~ak~~g~PLy~lLg--g~~ 180 (479)
.|+ .++|.|+|+||.+.+++|+.|++.. +. ...+ .+..+|++|||+||||+.||.+|+|||+||| |
T Consensus 61 ~i~-~l~p~LiG~dp~~ie~i~~~~~~~~~~~~~g~~G~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG~~G-- 137 (450)
T 3mzn_A 61 GLE-KCRSLVEGARVNEVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYG-- 137 (450)
T ss_dssp HHH-HTHHHHTTCBGGGHHHHHHHHHHHHGGGCCCCCCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTCBGGGGSTTTC--
T ss_pred HHH-HHHHHhCCCChhhHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC--
Confidence 454 4899999999999999999998642 11 1111 1446899999999999999999999999999 5
Q ss_pred CCCCcccccceEEeecCCccCCCcccccce------ee-c-cCCCCcHHHH----HHHHH-HHHHHHHHHHHhhhCCCCc
Q 011677 181 GKTNLTLPVPAFTVISGGKHAGNNLAIQDI------MI-L-PIGASSFGEA----LQMGS-ETYHHLKAVIAEKYGAHGC 247 (479)
Q Consensus 181 ~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~------~i-~-p~~~~~~~ea----~~~~~-e~~~~lk~~l~~K~G~~~~ 247 (479)
..+.++|++.+....|... ...+.+... .. + -.+..+.++. .+... ++|+++| .|.|
T Consensus 138 -~~r~~v~~y~~~~~~gd~~-~t~~~~~s~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG---- 207 (450)
T 3mzn_A 138 -RQRDEVEALGYLFLLGDPD-KTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFK----LKGG---- 207 (450)
T ss_dssp -CCCSEEEBCEEEECBCCGG-GSSSCCCCCSSCCSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEE----EECS----
T ss_pred -CcCceEEeeeeeccccccc-cccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEE----ECCC----
Confidence 3456777754432222100 000000000 00 0 0001223333 33222 2454444 4433
Q ss_pred ccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 011677 248 NVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELC 326 (479)
Q Consensus 248 ~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll 326 (479)
. .+.+++.++++.||+++ .+ .+| +|+| +.||.++++++. +.+
T Consensus 208 ------~--~~~~~Di~~v~avRea~----pd-~~L~vDaN-----------------------~~w~~~~A~~~~-~~L 250 (450)
T 3mzn_A 208 ------V--LRGEEEADCIRALHEAF----PE-ARLALDPN-----------------------GAWKLDEAVRVL-EPI 250 (450)
T ss_dssp ------S--SCHHHHHHHHHHHHHHC----TT-SEEEEECT-----------------------TCBCHHHHHHHH-GGG
T ss_pred ------C--CCHHHHHHHHHHHHHhC----CC-CeEEEECC-----------------------CCCCHHHHHHHH-HHh
Confidence 1 11223445555555443 22 356 9984 367899999875 567
Q ss_pred hhCCceeeecCCCccC----HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHH
Q 011677 327 ADYPIVSIEDPFDKED----WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAI 401 (479)
Q Consensus 327 ~~~~i~~iEdP~~~~D----~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~ 401 (479)
++| +.|||||++++| ++++++|++++ +||++||+ .++.++++++++.+++|++ ++|+ ++||||+++
T Consensus 251 ~~~-i~~iEeP~~~~d~~~~~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~di~------~~d~-~~GGit~a~ 321 (450)
T 3mzn_A 251 KHL-LSYAEDPCGQEGGFSGRETMAEFKKRTGLPTATNMI-ATDYKQLQYAVQLNSVDIP------LADC-HFWTMQGAV 321 (450)
T ss_dssp GGG-CSEEESSBCCBTTBCHHHHHHHHHHHHCCCEEESSS-SSSHHHHHHHHHHTCCSEE------BCCH-HHHCHHHHH
T ss_pred hhc-cceeeCCCCcccccchHHHHHHHHHhcCCCEEeCCc-cCCHHHHHHHHHcCCCCEE------EecC-ccCCHHHHH
Confidence 999 999999999999 79999999999 99999996 4679999999999999999 9999 799999999
Q ss_pred HHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 402 EVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 402 ~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
+++++|+++|+++ .+|...++.. ++.+||+.++.
T Consensus 322 kia~lA~a~gv~~-~~h~~~~~~I~~aA~~hlaaa~p 357 (450)
T 3mzn_A 322 AVGELCNEWGMTW-GSHSNNHFDISLAMMTHVAAACP 357 (450)
T ss_dssp HHHHHHHHTTCCC-BCCCCSCCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCEE-EecCCcccHHHHHHHHHHHHhCC
Confidence 9999999999995 6787777644 45667777764
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=330.24 Aligned_cols=301 Identities=11% Similarity=0.085 Sum_probs=216.0
Q ss_pred ceeeEEEEEEEecCCC-------CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHH--HHHHHHHH
Q 011677 45 SVITKIKARQILDSRG-------IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVN--RAVKNINE 115 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g-------~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~--~av~~i~~ 115 (479)
|+|++|+.+.+.-... +++++|+|+|+ |++ |+||+.+.+ |.++++. .+...|++
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~s~~~~~~V~v~td-G~~----------G~GE~~~~~------~~~~~~~~~~~~~~i~~ 65 (401)
T 2hzg_A 3 LKIDAVDLFYLSMPEVTDAADGSQDALLVRVAAG-GHI----------GWGECEAAP------LPSIAAFVCPKSHGVCR 65 (401)
T ss_dssp CBEEEEEEEEEECSSCCSSSCGGGEEEEEEEEET-TEE----------EEEEECSCH------HHHHHHHHCCCSBTTBC
T ss_pred CEEEEEEEEEEeccCCCccccccceEEEEEEEeC-CcE----------EEEeeeccc------CCcccchhHHHHHHHHH
Confidence 7999999998853321 45899999999 984 999986531 2233321 23445666
Q ss_pred HHHHhhcCCCCCCHH-HHHHHHHhhhccCCCCchhhh--HHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 116 RISEALVGMDPILQS-QIDQAMIDLDKTEKKGELGAN--AILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 116 ~l~p~LiG~d~~~~~-~id~~l~~~~~~~~~~~~g~~--A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
.++|.|+|+ +.+++ .+++.+......+ +.+..+ |++|||+||||+.||.+|+|||++||| ..+.++|+ |
T Consensus 66 ~l~~~l~G~-~~~~~~~l~~~~~~~~~~g--~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~~~~~vp~--~ 137 (401)
T 2hzg_A 66 PVSDSVLGQ-RLDGPDDIARIAALVGYNS--MDLLQAPHMLSGIEMALWDLLGRRLSAPAWALLGY---SASHGKRP--Y 137 (401)
T ss_dssp CGGGGTTTC-BCSSHHHHHHHHHHHHHHT--TTCTTHHHHHHHHHHHHHHHHHHHHTCBHHHHTTC---SCCCCBEE--E
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHhhccCC--ccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCC---CCCCceEe--e
Confidence 789999999 98885 2322221110000 012357 999999999999999999999999998 33345555 5
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCC-CchHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNI-SSIREGLDLVKE 271 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~-~~~~~~l~~v~~ 271 (479)
+++.++ + ++++ ..+++.+...++|+.+| .|. ..+| + ++ +.+.+.++.||+
T Consensus 138 ~~~~~~----~--~~~~---------~~~~a~~~~~~Gf~~iK----ik~----spvG---~---~~~~~~~e~v~avr~ 188 (401)
T 2hzg_A 138 ASLLFG----D--TPQE---------TLERARAARRDGFAAVK----FGW----GPIG---R---GTVAADADQIMAARE 188 (401)
T ss_dssp EEEECC----S--SHHH---------HHHHHHHHHHTTCSEEE----EES----TTTT---S---SCHHHHHHHHHHHHH
T ss_pred EEcCCC----C--CHHH---------HHHHHHHHHHhCCCeEE----EcC----CCCC---C---CHHHHHHHHHHHHHH
Confidence 444322 0 2222 23455555555565555 230 0122 1 23 344666777776
Q ss_pred HHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCC--CHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHH
Q 011677 272 AINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFK--SGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKS 348 (479)
Q Consensus 272 ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~--t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~ 348 (479)
++ |.+ ..+ +|++ +.| |.++++++++ .+++|++.|||||++++|+++|++
T Consensus 189 a~---G~d-~~l~vDan-----------------------~~~~~~~~~a~~~~~-~l~~~~i~~iEqP~~~~d~~~~~~ 240 (401)
T 2hzg_A 189 GL---GPD-GDLMVDVG-----------------------QIFGEDVEAAAARLP-TLDAAGVLWLEEPFDAGALAAHAA 240 (401)
T ss_dssp HH---CSS-SEEEEECT-----------------------TTTTTCHHHHHTTHH-HHHHTTCSEEECCSCTTCHHHHHH
T ss_pred Hh---CCC-CeEEEECC-----------------------CCCCCCHHHHHHHHH-HHHhcCCCEEECCCCccCHHHHHH
Confidence 66 644 455 8883 357 8899998865 489999999999999999999999
Q ss_pred HHh-hh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh
Q 011677 349 VLQ-IC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS 426 (479)
Q Consensus 349 L~~-~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~ 426 (479)
|++ ++ +||++||+..+ +++++++++.+++|++ ++|++++||+|++++++++|+++|++++ +| +.||..+
T Consensus 241 l~~~~~~iPI~~dE~~~~-~~~~~~~i~~~~~d~v------~ik~~~~GGit~~~~i~~~A~~~g~~~~-~h-~~es~i~ 311 (401)
T 2hzg_A 241 LAGRGARVRIAGGEAAHN-FHMAQHLMDYGRIGFI------QIDCGRIGGLGPAKRVADAAQARGITYV-NH-TFTSHLA 311 (401)
T ss_dssp HHTTCCSSEEEECTTCSS-HHHHHHHHHHSCCSEE------EECHHHHTSHHHHHHHHHHHHHHTCEEE-EC-CCSCHHH
T ss_pred HHhhCCCCCEEecCCcCC-HHHHHHHHHCCCCCEE------EeCcchhCCHHHHHHHHHHHHHcCCEEe-cC-CCCcHHH
Confidence 999 89 99999998754 9999999999999999 9999999999999999999999999975 67 7898887
Q ss_pred HH--HHhHhhcC
Q 011677 427 FI--ADLSVGLA 436 (479)
Q Consensus 427 ~~--~dlAv~~~ 436 (479)
.. +|||.++.
T Consensus 312 ~~a~~hlaaa~~ 323 (401)
T 2hzg_A 312 LSASLQPFAGLE 323 (401)
T ss_dssp HHHHHGGGTTCT
T ss_pred HHHHHHHHHhCC
Confidence 65 56655554
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=329.74 Aligned_cols=310 Identities=14% Similarity=0.082 Sum_probs=213.4
Q ss_pred CceeeEEEEEEEecCCC---------C---ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQILDSRG---------I---PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g---------~---~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+++.+.-+.. . ..+.|+|+|++|++ |+||+. +++. +..
T Consensus 7 ~~~It~i~~~~v~~~d~~~~~~~g~h~p~~~~~~V~i~td~Gi~----------G~GE~~----------~~~~---v~~ 63 (470)
T 3p0w_A 7 TPRVTEMQVIPVAGRDSMLLNLCGAHAPFFTRNLVILKDNAGRT----------GVGEVP----------GGEG---IRQ 63 (470)
T ss_dssp CCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEE----------CCHH---HHH
T ss_pred CCeEEEEEEEEecCCCcccccccccCCCcceEEEEEEEECCCCE----------EEEeCC----------ChHH---HHH
Confidence 67999999999953311 1 25799999999994 999963 1222 334
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCc--------------h-----------hhhHHHHHHHHHHHHHHH
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGE--------------L-----------GANAILAVSIAACKAGAA 166 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~--------------~-----------g~~A~~AvsiAl~da~ak 166 (479)
.|++ ++|.|+|+||.+.+.+|+.|++......+++ . ...|++|||+||||+.||
T Consensus 64 ~i~~-l~p~LiG~d~~~ie~i~~~~~~~~~~~~~~G~~~~~~~~~r~~~p~~~~g~~~~~~~~~~A~sAID~ALWDl~gK 142 (470)
T 3p0w_A 64 ALER-VIPLVVGQSIGRTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQ 142 (470)
T ss_dssp HHHH-TGGGTTTCBGGGHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhCCCChhhHHHHHHHHHHHHhhcCCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4554 8999999999999999999987421110111 0 137999999999999999
Q ss_pred hcCchhHHHHh-cccCCCCcccccceEEeecCCccCCCcccccce------ee-c-cCCCCcHH----HHHHHHH-HHHH
Q 011677 167 EKEVPLYKHIA-DLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDI------MI-L-PIGASSFG----EALQMGS-ETYH 232 (479)
Q Consensus 167 ~~g~PLy~lLg-g~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~------~i-~-p~~~~~~~----ea~~~~~-e~~~ 232 (479)
.+|+|||+||| | ..+.++|++.+....|.. ....+.+... .. + ..+..+.+ ++.+... ++|+
T Consensus 143 ~~g~Pv~~LLGgG---~~r~~v~~y~~~~~~gd~-~~t~~~~~~~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~ 218 (470)
T 3p0w_A 143 FLEVPVAELLGAG---QQRDSAPMLAYLFYVGDR-RKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERYGFA 218 (470)
T ss_dssp HHTSBGGGTSTTS---CCCSEEEBCEEECCBCCG-GGSCSCCCCCCTTCCHHHHHTTSCBCSHHHHHHHHHHHHHHHCCS
T ss_pred HcCCcHHHHhCCC---CCCCeEEEeeeecccccc-ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999 5 445677765443211110 0000000000 00 0 00012233 3333333 3554
Q ss_pred HHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCC
Q 011677 233 HLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQN 311 (479)
Q Consensus 233 ~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~ 311 (479)
++| .|.|. .+.+++.++++.||+++ .+ .+| +|+| +
T Consensus 219 ~~K----lKvG~------------~~~~~Di~rv~avRea~----pd-~~L~vDaN-----------------------~ 254 (470)
T 3p0w_A 219 DFK----LKGGV------------MPGAEEMEAIAAIKARF----PH-ARVTLDPN-----------------------G 254 (470)
T ss_dssp EEE----EECSS------------SCHHHHHHHHHHHHHHC----TT-SEEEEECT-----------------------T
T ss_pred EEE----EeCCC------------CCHHHHHHHHHHHHHhC----CC-CeEEeeCC-----------------------C
Confidence 444 45331 11223445555555543 22 356 9984 3
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecCCCccC----HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDPFDKED----WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYP 386 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D----~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~ 386 (479)
.||.++++++. +.+++| +.|||||++++| ++++++|++++ +||++||+ +++.++++++++.+++|++
T Consensus 255 ~w~~~~Ai~~~-~~Le~~-l~~iEeP~~~~d~~~~~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~l~~~a~div----- 326 (470)
T 3p0w_A 255 AWSLNEAIALC-KGQGHL-VAYAEDPCGPEAGYSGREVMAEFKRATGIPTATNMI-ATDWRQMGHAVQLHAVDIP----- 326 (470)
T ss_dssp BBCHHHHHHHH-TTCTTT-CSEEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSS-SCSHHHHHHHHHTTCCSEE-----
T ss_pred CCCHHHHHHHH-Hhcccc-ceeecCCCChhhccchHHHHHHHHhcCCCCEEeCCc-cCCHHHHHHHHHcCCCCEE-----
Confidence 67889999875 557899 999999999999 79999999999 99999996 4669999999999999999
Q ss_pred CCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 387 ~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
++|+ ++||||++++++++|+++|+++ ++|+..|+.. ++.+||+.++.
T Consensus 327 -~~d~-~~GGit~a~kia~lA~a~gv~~-~~h~~~e~~I~~aA~~hlaaa~p 375 (470)
T 3p0w_A 327 -LADP-HFWTMQGSVRVAQLCDEWGLTW-GSHSNNHFDVSLAMFTHVAAAAP 375 (470)
T ss_dssp -BCCH-HHHCHHHHHHHHHHHHHHTCCC-BCCCCSCCHHHHHHHHHHHHTCC
T ss_pred -EecC-ccCCHHHHHHHHHHHHHcCCEE-EecCCcccHHHHHHHHHHHHhCC
Confidence 9999 7999999999999999999996 6787777644 45677777764
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=324.81 Aligned_cols=314 Identities=18% Similarity=0.123 Sum_probs=212.3
Q ss_pred hhcCCceeeEEEEEEEecCC-------C-----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHH
Q 011677 40 RKAVPSVITKIKARQILDSR-------G-----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVN 107 (479)
Q Consensus 40 ~~~~~~~I~~I~~~~i~ds~-------g-----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~ 107 (479)
|+.++|+|++|+++.|.-+. | ...+.|+|+|++|++ |+||+.. ++.+
T Consensus 4 ~~~~~~~It~v~v~~v~~~d~~~~~~~g~h~~~~~~~iV~v~td~Gi~----------G~GE~~~----------~~~v- 62 (455)
T 3pfr_A 4 STQSVPVITDMKVIPVAGHDSMLMNVGGAHSPYFTRNIVILTDNSGHT----------GVGEAPG----------GATI- 62 (455)
T ss_dssp ---CCCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEEC----------SHHH-
T ss_pred ccCCCCEEEEEEEEEeccCCccccccccCCCCcceEEEEEEEECCCCE----------EEEeCCC----------cHHH-
Confidence 44457799999999995321 1 124689999999994 9999732 2223
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHh--hhc-c--CCCCc----hhhhHHHHHHHHHHHHHHHhcCchhHHHHh-
Q 011677 108 RAVKNINERISEALVGMDPILQSQIDQAMID--LDK-T--EKKGE----LGANAILAVSIAACKAGAAEKEVPLYKHIA- 177 (479)
Q Consensus 108 ~av~~i~~~l~p~LiG~d~~~~~~id~~l~~--~~~-~--~~~~~----~g~~A~~AvsiAl~da~ak~~g~PLy~lLg- 177 (479)
...|+ .++|.|+|+||.+.+++|+.|++ .-. . +.++. +..+|++|||+||||+.||.+|+|||+|||
T Consensus 63 --~~~i~-~l~p~LiG~dp~~ie~i~~~~~~~~~~~~~~~g~~G~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGg 139 (455)
T 3pfr_A 63 --ENALT-EAIPHVVGRPISILNKIVNDMHNGYLDADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGP 139 (455)
T ss_dssp --HHHHH-HHGGGTTTCBGGGHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHTSBGGGGSTT
T ss_pred --HHHHH-HHHHHhcCCChhHHHHHHHHHHhhccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC
Confidence 33454 58999999999999999999986 211 0 11111 126899999999999999999999999999
Q ss_pred cccCCCCcccccceEEeecCCccCCCccccc-c------eee-ccCCCCcHHHHHH----HHH-HHHHHHHHHHHhhhCC
Q 011677 178 DLAGKTNLTLPVPAFTVISGGKHAGNNLAIQ-D------IMI-LPIGASSFGEALQ----MGS-ETYHHLKAVIAEKYGA 244 (479)
Q Consensus 178 g~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~-e------~~i-~p~~~~~~~ea~~----~~~-e~~~~lk~~l~~K~G~ 244 (479)
| ..+.++|++.+....|.. ....+.+. . ..- ......+.++..+ ... ++|+++| .|.|.
T Consensus 140 G---~~r~~v~~y~~~~~~gd~-~~~~~~~~~s~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG~ 211 (455)
T 3pfr_A 140 G---KQRDEVTVLGYLFYVGDD-KITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFK----LKGGV 211 (455)
T ss_dssp S---CCCSEEEBCEEECCBCCG-GGSCSCCCCCCCSSCTHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEE----EECSS
T ss_pred C---CcCCeEEEeeeecccccc-ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEE----EcCCC
Confidence 5 445677765443222210 00000000 0 000 0000123333332 222 2444443 34331
Q ss_pred CCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHH
Q 011677 245 HGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYK 323 (479)
Q Consensus 245 ~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~ 323 (479)
.+.+++.++++.||+++ .+ .+| +|+| +.||.++++++.
T Consensus 212 ------------~~~~~Di~~v~avRea~----pd-~~L~vDaN-----------------------~~w~~~~A~~~~- 250 (455)
T 3pfr_A 212 ------------FEGSKEIDTVIELKKHF----PD-ARITLDPN-----------------------GCWSLDEAIQLC- 250 (455)
T ss_dssp ------------SCHHHHHHHHHHHHHHC----TT-CCEEEECT-----------------------TBSCHHHHHHHH-
T ss_pred ------------CCHHHHHHHHHHHHHhC----CC-CeEeecCC-----------------------CCCCHHHHHHHH-
Confidence 11223445555555543 22 356 9984 367899999875
Q ss_pred HHHhhCCceeeecCCCccC----HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHH
Q 011677 324 ELCADYPIVSIEDPFDKED----WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVT 398 (479)
Q Consensus 324 ~ll~~~~i~~iEdP~~~~D----~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggit 398 (479)
+.+++| +.|||||++++| ++++++|++++ +||++||+ .++.++++++++.+++|++ ++|+ ++||||
T Consensus 251 ~~L~~~-l~~iEeP~~~~d~~~~~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~di~------~~d~-~~GGit 321 (455)
T 3pfr_A 251 KGLNDV-LTYAEDPCIGENGYSGREIMAEFRRRTGIPTATNMI-ATNWREMCHAIMLQSVDIP------LADP-HFWTLT 321 (455)
T ss_dssp TTCTTT-CSEEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSS-CCSHHHHHHHHHHTCCSEE------BCCH-HHHCHH
T ss_pred Hhhccc-ceeeecCCChhhccchHHHHHHHHhcCCCCEEeCCC-cCCHHHHHHHHHcCCCCEE------EecC-CcCCHH
Confidence 557899 999999999999 79999999999 99999996 4669999999999999999 9998 799999
Q ss_pred HHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 399 EAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 399 ea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
++++++++|+++|+++ .+|...++.. ++.+||+.++.
T Consensus 322 ~a~kia~lA~a~gv~~-~~h~~~~~~i~~aa~~hlaaa~p 360 (455)
T 3pfr_A 322 GASRVAQLCNEWGLTW-GCHSNNHFDISLAMFSHVGAAAP 360 (455)
T ss_dssp HHHHHHHHHHHTTCCC-BCCCCSCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCEE-EecCCcccHHHHHHHHHHHHhCC
Confidence 9999999999999995 6787777644 45678877764
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=322.41 Aligned_cols=326 Identities=13% Similarity=0.106 Sum_probs=212.1
Q ss_pred HHHHHHhhhcCCceeeEEEEEEEe--cC-----CC--Cce---EEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCc
Q 011677 33 LFISNHMRKAVPSVITKIKARQIL--DS-----RG--IPT---VEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGT 100 (479)
Q Consensus 33 ~~l~~~~~~~~~~~I~~I~~~~i~--ds-----~g--~~~---v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~ 100 (479)
|+=--||.+.++|+|+++++..|- || .| .|. .+|+|+|++|++ |+||+.
T Consensus 14 ~~~~~~~~~~~~p~i~~~~v~pva~~d~~l~~~~g~h~p~f~RtiV~v~Td~Gi~----------G~GE~~--------- 74 (464)
T 4g8t_A 14 GTENLYFQSMSTPIITEMQVIPVAGHDSMLLNLSGAHSPYFTRNIVILKDNSGNT----------GVGEVP--------- 74 (464)
T ss_dssp ----------CCCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEE---------
T ss_pred CccceeeeccCCCEEeEEEEEEecCCCcccccCCcccCCccceEEEEEEECCCCE----------EEEeCC---------
Confidence 333457888777899999999993 33 22 232 469999999994 999963
Q ss_pred cccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCC---------CchhhhHHHHHHHHHHHHHHHhcCch
Q 011677 101 YLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKK---------GELGANAILAVSIAACKAGAAEKEVP 171 (479)
Q Consensus 101 y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~---------~~~g~~A~~AvsiAl~da~ak~~g~P 171 (479)
+++.+. +.|+ .++|.|+|+||.+.+.||+.|.+....... .....+|++|||+||||+.||.+|+|
T Consensus 75 -g~~~~~---~~le-~~~p~liG~dp~~ie~i~~~l~~~~~~~~~~g~g~~~~~~~~~~~A~sAID~ALWDl~gK~~g~P 149 (464)
T 4g8t_A 75 -GGEKIR---QTLE-DAKPLVIGKTLGEYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFLGVT 149 (464)
T ss_dssp -CCHHHH---HHHH-HHGGGTTTCBGGGHHHHHHHHHHHTTTSCTTTTCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTSB
T ss_pred -CcHHHH---HHHH-HHHHHHcCCCHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCc
Confidence 333333 3343 589999999999999999999863211111 12346799999999999999999999
Q ss_pred hHHHHhcccCCCCcccccceEEeecCCccCCCccccc-------ceeecc-CCCCcHHHHHHHHHHHHHHHHHHHHhhhC
Q 011677 172 LYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQ-------DIMILP-IGASSFGEALQMGSETYHHLKAVIAEKYG 243 (479)
Q Consensus 172 Ly~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~-------e~~i~p-~~~~~~~ea~~~~~e~~~~lk~~l~~K~G 243 (479)
||+|||+ |..+.++|++.+....|.... ..+... ..+... ....+..+.++...+.+. +.|
T Consensus 150 v~~LLGg--G~~Rd~V~~y~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~G 218 (464)
T 4g8t_A 150 VASLLGD--GQQRDAVEMLGYLFFIGDRKK-TTLAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYE--------KYG 218 (464)
T ss_dssp TGGGSTT--SCCCSEEEBCEEECCBCCGGG-SCSCCCCCTTCSSHHHHHTTSCBCSHHHHHHHHHHHHH--------HHC
T ss_pred HHHHhCC--CCCCceEEEEEEeeccCcccc-cchhhhcccccccchhhhcccccCCHHHHHHHHHHHHH--------HcC
Confidence 9999994 155677777665543321100 000000 000000 001123333333322221 223
Q ss_pred CCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHH
Q 011677 244 AHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMY 322 (479)
Q Consensus 244 ~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~ 322 (479)
....++.- |. .+.+++.++++.||+++ | + .+| +|+| +.||.++++++.
T Consensus 219 f~~~KlKv-G~--~~~~~di~~v~avrea~---p-d-~~L~vDaN-----------------------~~wt~~~Ai~~~ 267 (464)
T 4g8t_A 219 FNDFKLKG-GV--LDGFEEAEAVTALAKRF---P-D-ARITLDPN-----------------------GAWSLDEAVKIG 267 (464)
T ss_dssp CSCEEEEC-SS--SCHHHHHHHHHHHHHHS---T-T-CCEEEECT-----------------------TCBCHHHHHHHH
T ss_pred CCeEEEeC-CC--CCHHHHHHHHHHHHhhC---C-C-ceEEEECC-----------------------CccCHHHHHHHH
Confidence 32222210 11 11223344555555544 4 2 356 9984 367899999865
Q ss_pred HHHHhhCCceeeecCCCccCH----HHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccH
Q 011677 323 KELCADYPIVSIEDPFDKEDW----EHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTV 397 (479)
Q Consensus 323 ~~ll~~~~i~~iEdP~~~~D~----~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggi 397 (479)
+.++++ +.|||||++++|+ +.+++|++++ +||++||... ++++++++++.+++|++ +++ .++|||
T Consensus 268 -~~le~~-l~wiEeP~~~~d~~~~~e~~a~lr~~~~iPIa~gE~~~-~~~~~~~~i~~~avdi~------~~d-~~~GGi 337 (464)
T 4g8t_A 268 -KQLKGV-LAYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMIAT-DWRQMGHTISLQSVDIP------LAD-PHFWTM 337 (464)
T ss_dssp -HHTTTT-CSCEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSC-SHHHHHHHHHHTCCSEE------BCC-HHHHCH
T ss_pred -HHhhhc-cceeecCcCcccccchHHHHHhhhccCCCCcccccccc-chhhHHHHHHhhCCCEE------ecc-ccccch
Confidence 557888 9999999999985 7788999999 9999999764 59999999999999999 999 589999
Q ss_pred HHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhc
Q 011677 398 TEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGL 435 (479)
Q Consensus 398 tea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~ 435 (479)
|++++++++|+++|+++ +.|...++.. ++.+|+|.++
T Consensus 338 t~~~kia~lA~~~gi~v-~~h~~~~~~I~laA~~hlaaa~ 376 (464)
T 4g8t_A 338 QGSIRVAQMCHEWGLTW-GSHSNNHFDISLAMFTHVAAAA 376 (464)
T ss_dssp HHHHHHHHHHHHHTCCC-BCCCCSCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCEE-EEcCCcccHHHHHHHHHHHHhC
Confidence 99999999999999997 5575556544 4556777665
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=312.24 Aligned_cols=270 Identities=22% Similarity=0.218 Sum_probs=198.6
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM-DPILQSQIDQAMIDL 139 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~-d~~~~~~id~~l~~~ 139 (479)
++.+.|+| |++|++ |+||+.++ .|.+++...+...+++. . |+|+ ||.+.+++|+.|.+.
T Consensus 26 ~~~~~V~v-td~G~~----------G~GE~~~~------~~~ge~~~~~~~~l~~~-~--l~g~~d~~~~e~~~~~l~~~ 85 (338)
T 3ijl_A 26 TPDVQVEI-EYEGVT----------GYGEASMP------PYLGETVESVMNFLKKV-N--LEQFSDPFQLEDILSYVDSL 85 (338)
T ss_dssp ECEEEEEE-EETTEE----------EEEEEECC------GGGSCCHHHHHHHHTTC-C--CTTCCCTTCHHHHHHHHHHT
T ss_pred eeEEEEEE-EeCCcE----------EEEeeeCC------CCCCCCHHHHHHHHHHH-H--hcCCCCccCHHHHHHHHHHh
Confidence 45799999 899994 99998874 24556666665554432 2 8899 999999999999863
Q ss_pred hccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCc
Q 011677 140 DKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASS 219 (479)
Q Consensus 140 ~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~ 219 (479)
.+ ...+|++|||+||||+.||..|+|||++||| . +.++|+..+++ |. .+
T Consensus 86 ~~------~~~~A~said~ALwDl~gk~~g~Pl~~LlGg---~-~~~v~~~~~~~---~~------------------~~ 134 (338)
T 3ijl_A 86 SP------KDTAAKAAVDIALHDLVGKLLGAPWYKIWGL---N-KEKTPSTTFTI---GI------------------DT 134 (338)
T ss_dssp CS------CCHHHHHHHHHHHHHHHHHHHTSBHHHHTTC---C-GGGCCBBCCBC---CC------------------CC
T ss_pred cc------CCHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CCCcceEEEEE---eC------------------CC
Confidence 21 2357999999999999999999999999998 3 45666533321 10 12
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccC
Q 011677 220 FGEALQMGSE---TYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYS 295 (479)
Q Consensus 220 ~~ea~~~~~e---~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~ 295 (479)
.++..+...+ +|+.+| .|.| . +.+.+.++.||+++ + .++ +|+|
T Consensus 135 ~e~~~~~a~~~~~g~~~~K----~Kvg-------~--------~~d~~~v~avR~~~---~---~~l~vDaN-------- 181 (338)
T 3ijl_A 135 PDVVRAKTKECAGLFNILK----VKLG-------R--------DNDKEMIETIRSVT---D---LPIAVDAN-------- 181 (338)
T ss_dssp HHHHHHHHHHHHTTCSSEE----EECS-------S--------SCHHHHHHHHHTTC---C---CCEEEECT--------
T ss_pred HHHHHHHHHHHHhcccEEE----EecC-------c--------HHHHHHHHHHHhhc---C---CcEEEECc--------
Confidence 2222222221 344433 4433 1 23566676666554 3 356 9984
Q ss_pred ceeeccCCCCCCCCCCCCC-HHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHh
Q 011677 296 TKYDLDFKSPNKSGQNFKS-GEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERAT 373 (479)
Q Consensus 296 g~Y~~~~~~~~~~~~~~~t-~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i 373 (479)
+.|| .++++++.. .+++|++.|||||++++|++++++|++++ +||++||+..+ ++++++++
T Consensus 182 ---------------~~~t~~~~A~~~~~-~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~-~~~~~~~~ 244 (338)
T 3ijl_A 182 ---------------QGWKDRQYALDMIH-WLKEKGIVMIEQPMPKEQLDDIAWVTQQSPLPVFADESLQR-LGDVAALK 244 (338)
T ss_dssp ---------------TCCCCHHHHHHHHH-HHHHTTEEEEECCSCTTCHHHHHHHHHTCSSCEEESTTCCS-GGGTGGGB
T ss_pred ---------------CCCCCHHHHHHHHH-HHhhCCCCEEECCCCCCcHHHHHHHHhcCCCCEEECCCCCC-HHHHHHHH
Confidence 3674 899998764 57999999999999999999999999999 99999998765 78888875
Q ss_pred cCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCc
Q 011677 374 LIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQI 440 (479)
Q Consensus 374 ~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~i 440 (479)
+++|++ ++|++++||||++++++++|+++|+++++++ +.|+..+..+.++++....+.
T Consensus 245 --~a~d~i------~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~-~~es~i~~aa~~~la~~~~~~ 302 (338)
T 3ijl_A 245 --GAFTGI------NIKLMKCTGMREAWKMVTLAHALGMRVMVGC-MTETSCAISAASQFSPAVDFA 302 (338)
T ss_dssp --TTBSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEECC-CSCCHHHHHHHHTTGGGCSEE
T ss_pred --hhCCEE------EecccccCCHHHHHHHHHHHHHcCCEEEecC-CcccHHHHHHHHHHhccCCcc
Confidence 799999 9999999999999999999999999987754 567766554544444444554
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=312.72 Aligned_cols=291 Identities=16% Similarity=0.161 Sum_probs=208.0
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. ++.+ .+++.|+|+|++|++ |+||+..... +.|. ..++...
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td~G~~----------G~GE~~~~g~---~~~~---~~~~~~~ 66 (389)
T 2oz8_A 3 LSLSHFRITRFQFARDRVIGDSQVRADDVNVAALELVSESGEV----------GLGFIQTLFN---PLPD---QQEIESV 66 (389)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEEEESSS---CCCC---HHHHHHH
T ss_pred CEEEEEEEEEEEeccCCceecccceecccceEEEEEEECCCCE----------EEEEeccCCC---cccc---HHHHHHH
Confidence 689999988872 3333 356999999999984 9999876311 2233 3456667
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhc--cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccc
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDK--TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVP 190 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~--~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp 190 (479)
+++.++|.|+|+|+.++ +..+++ +++++.+..+|++|||+||||+.||..|+|||++||| . + -++|
T Consensus 67 i~~~l~p~l~G~d~~~~------~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lLGg---~-~--~~vp 134 (389)
T 2oz8_A 67 FEHEVWPSLKGNRAIAL------VHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGS---R-R--NRVK 134 (389)
T ss_dssp HHHHTHHHHTTSCHHHH------TTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHHTTC---S-C--SEEE
T ss_pred HHHHHHHHHcCCCHHHH------HHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCC---C-C--CceE
Confidence 88889999999998665 223321 1122223568999999999999999999999999998 2 2 3566
Q ss_pred eEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHH
Q 011677 191 AFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVK 270 (479)
Q Consensus 191 ~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~ 270 (479)
+|++ +|.+. .+.++ ..+++.+...++|+.+| .|.| . .+++.+.+.++.||
T Consensus 135 ~y~~--~~~~~---~~~~~---------~~~~a~~~~~~Gf~~vK----ik~g-------~-----~~~~~~~e~v~avR 184 (389)
T 2oz8_A 135 AYAS--GLDFH---LDDDA---------FVSLFSHAASIGYSAFK----IKVG-------H-----RDFDRDLRRLELLK 184 (389)
T ss_dssp EEEE--CCBTT---CCHHH---------HHHHHHHHHHTTCCEEE----EECC-------C-----SSHHHHHHHHHHHH
T ss_pred EEEe--CCCcC---CCHHH---------HHHHHHHHHHhCCCEEE----EccC-------C-----CCHHHHHHHHHHHH
Confidence 6765 33221 12222 24445555455565554 3422 1 12222344444444
Q ss_pred HHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhh--CCceeeecCCCccCHHHHH
Q 011677 271 EAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCAD--YPIVSIEDPFDKEDWEHTK 347 (479)
Q Consensus 271 ~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~--~~i~~iEdP~~~~D~~g~~ 347 (479)
+ .+|.+ ..| +|+| +.||.+++++++. .+++ |++.|||||++++|+++|+
T Consensus 185 ~---a~G~~-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~g~~i~~iEqP~~~~~~~~~~ 236 (389)
T 2oz8_A 185 T---CVPAG-SKVMIDPN-----------------------EAWTSKEALTKLV-AIREAGHDLLWVEDPILRHDHDGLR 236 (389)
T ss_dssp T---TSCTT-CEEEEECT-----------------------TCBCHHHHHHHHH-HHHHTTCCCSEEESCBCTTCHHHHH
T ss_pred H---hhCCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HHHhcCCCceEEeCCCCCcCHHHHH
Confidence 4 34644 456 8883 3578899998865 4789 9999999999999999999
Q ss_pred HHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch
Q 011677 348 SVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED 425 (479)
Q Consensus 348 ~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d 425 (479)
+|++++ +||++||+. ++++++++++.+++|+| ++| ||||++++++++|+++|+++|++|++.|
T Consensus 237 ~l~~~~~~iPIa~dE~~--~~~~~~~~i~~~~~d~v------~ik----GGit~a~~i~~~A~~~gi~~~~~~~~~e--- 301 (389)
T 2oz8_A 237 TLRHAVTWTQINSGEYL--DLQGKRLLLEAHAADIL------NVH----GQVTDVMRIGWLAAELGIPISIGNTFLE--- 301 (389)
T ss_dssp HHHHHCCSSEEEECTTC--CHHHHHHHHHTTCCSEE------EEC----SCHHHHHHHHHHHHHHTCCEEECCCGGG---
T ss_pred HHHhhCCCCCEEeCCCC--CHHHHHHHHHcCCCCEE------EEC----cCHHHHHHHHHHHHHcCCeEeecccHHH---
Confidence 999987 999999986 59999999999999999 999 9999999999999999999988755433
Q ss_pred hHHHHhHhhcCC
Q 011677 426 SFIADLSVGLAS 437 (479)
Q Consensus 426 ~~~~dlAv~~~~ 437 (479)
+.+|++.++..
T Consensus 302 -a~lhlaaa~~~ 312 (389)
T 2oz8_A 302 -AGVHMAVALPE 312 (389)
T ss_dssp -TTHHHHHHSTT
T ss_pred -HHHHHHhcCCC
Confidence 56788877643
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=307.84 Aligned_cols=289 Identities=16% Similarity=0.084 Sum_probs=200.4
Q ss_pred CceeeEEEEEEEe--------c--CCCC-----ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHH
Q 011677 44 PSVITKIKARQIL--------D--SRGI-----PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNR 108 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------d--s~g~-----~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~ 108 (479)
.|+|++|+.+.+- + ++|. ..+.|+|+|+ |++ |+||+... .
T Consensus 11 ~mkI~~i~~~~v~~pl~~~f~~s~~~g~~~~~~~~~~V~i~td-G~~----------G~GE~~~~---------~----- 65 (392)
T 3v5c_A 11 DWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQT----------GYGSSIHM---------T----- 65 (392)
T ss_dssp TCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEE----------EEEECCSC---------C-----
T ss_pred CcEEEEEEEEEEeeecCcccccccccCccCCCceeEEEEEEEc-CCE----------EEEeecCc---------H-----
Confidence 6799999999982 2 2442 3688999999 994 99997541 0
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcc--
Q 011677 109 AVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLT-- 186 (479)
Q Consensus 109 av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~-- 186 (479)
+.++|.|+|+||.+.. .. .+.+..+|++|||+||||+.||.+|+|||+|||| ..+.+
T Consensus 66 ------~~l~~~liG~d~~~~~-------~~-----~~~~~~~A~aaiD~ALwDl~gK~~g~Pv~~LLGG---~~r~~~~ 124 (392)
T 3v5c_A 66 ------PEWAEDVIGRRLLDLF-------DD-----RGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSG---AHLETGA 124 (392)
T ss_dssp ------HHHHHTTTTCBGGGGB-------CT-----TSCBCGGGHHHHHHHHHHHHHHHHTCBHHHHHSC---CCSCCCC
T ss_pred ------HHHHHHhCCCCHHHHH-------hh-----ccchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCC---CCCcccc
Confidence 2578999999997531 11 1234467999999999999999999999999998 33333
Q ss_pred -cccceEEeecCCccCCCcccccceeecc-CCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCC---CCc
Q 011677 187 -LPVPAFTVISGGKHAGNNLAIQDIMILP-IGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPN---ISS 261 (479)
Q Consensus 187 -~Pvp~~~~i~GG~~~~~~l~~~e~~i~p-~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~---~~~ 261 (479)
+++|+|+...| .. + +...+ -| ..+...+++.+...++|+.+| .|.| ..+.+.+. .+.
T Consensus 125 ~v~v~~y~~~~~-~~-~--~~~~~---~~~~~e~~~~~a~~~~~~Gf~~~K----lKvg-------~~~~~~~~~~~~~~ 186 (392)
T 3v5c_A 125 SLVVPCYDTSLY-FD-D--LHLAD---ERAAVALMQEEAMQGYAKGQRHFK----IKVG-------RGGRHMPLWEGTKR 186 (392)
T ss_dssp CEEEEEEEEEEC-BT-T--TTCCC---HHHHHHHHHHHHHHHHHTTCCCEE----EECC-------TTTTTSCHHHHHHH
T ss_pred cceEEEEEeecc-cc-c--ccccc---cccCHHHHHHHHHHHHHCCCCEEE----ECCC-------CCCccccccccHHH
Confidence 34666754221 10 0 00000 00 001123334444444555554 4433 22222221 123
Q ss_pred hHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCc
Q 011677 262 IREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDK 340 (479)
Q Consensus 262 ~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~ 340 (479)
+.++++.||+++ |.+ .++ +|+| +.||.++++++.+ .+++|++.|||||++
T Consensus 187 d~~~v~avR~a~---g~~-~~l~vDaN-----------------------~~w~~~~A~~~~~-~L~~~~l~~iEeP~~- 237 (392)
T 3v5c_A 187 DIAIVRGISEVA---GPA-GKIMIDAN-----------------------NAYNLNLTKEVLA-ALSDVNLYWLEAAFH- 237 (392)
T ss_dssp HHHHHHHHHHHH---CTT-CCEEEECT-----------------------TCCCHHHHHHHHH-HTTTSCCCEEECSSS-
T ss_pred HHHHHHHHHHHc---CCC-CcEEeeCC-----------------------CCcCHHHHHHHHH-hcccCCCeEEeCCCC-
Confidence 445555555554 755 466 9984 3678999998754 579999999999999
Q ss_pred cCHHHHHHHHhh-----h-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeE
Q 011677 341 EDWEHTKSVLQI-----C-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGV 414 (479)
Q Consensus 341 ~D~~g~~~L~~~-----~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~ 414 (479)
+|++++++|+++ + +||+.||+.. .++++++++.+++|++ |+|+++ ||||++++++++|+++|+++
T Consensus 238 ~d~~~~~~l~~~~~~~~~~ipIa~gE~~~--~~~~~~li~~~a~dii------~~d~~~-GGitea~kia~~A~~~gv~~ 308 (392)
T 3v5c_A 238 EDEALYEDLKEWLGQRGQNVLIADGEGLA--SPHLIEWATRGRVDVL------QYDIIW-PGFTHWMELGEKLDAHGLRS 308 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCCEEEECCSSC--CTTHHHHHHTTSCCEE------CCBTTT-BCHHHHHHHHHHHHHTTCEE
T ss_pred cCHHHHHHHHHhhccCCCCCcEECCCccc--HHHHHHHHHcCCCcEE------EeCCCC-CCHHHHHHHHHHHHHcCCeE
Confidence 699999999986 6 9999999764 6889999999999999 999999 99999999999999999998
Q ss_pred EEecCCCCCch--hHHHHhHhhcC
Q 011677 415 VISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 415 ~v~h~~get~d--~~~~dlAv~~~ 436 (479)
++ |+. ++.. ++.+|||.++.
T Consensus 309 ~~-h~~-~s~i~~aa~~hlaaa~p 330 (392)
T 3v5c_A 309 AP-HCY-GNAYGIYASGHLSAAVR 330 (392)
T ss_dssp CC-BCC-SCTHHHHHHHHHGGGCT
T ss_pred Ee-cCC-CcHHHHHHHHHHHHhCC
Confidence 54 654 4544 45667766653
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=297.99 Aligned_cols=273 Identities=14% Similarity=0.042 Sum_probs=202.8
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .+.+ +..+.|+|+|++|++ |+||+.+++. +.|.+++...+...
T Consensus 2 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~~---~~~~~e~~~~~~~~ 68 (342)
T 2okt_A 2 LKLTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNA----------YFGECNAFQT---DWYDHETIASVKHV 68 (342)
T ss_dssp BCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTCCE----------EEEECCCBSS---TTSCSCBHHHHHHH
T ss_pred cEEEEEEEEEEeecccCCeecccEEEEeeeEEEEEEEECCCCE----------EEEEecCCCC---CcCCCCCHHHHHHH
Confidence 689999988772 2333 246889999999984 9999876532 34778888888788
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+++.+ |.|+|+||.+.+.+|+.|.+.. + ...|++|||+||||+.||..|+ ++|.+
T Consensus 69 l~~~~-~~l~G~d~~~~~~l~~~l~~~~-----g--~~~a~said~ALwDl~gk~~g~-----------------~v~~~ 123 (342)
T 2okt_A 69 IEQWF-EDNRNKSFETYEAALKLVDSLE-----N--TPAARATIVMALYQMFHVLPSF-----------------SVAYG 123 (342)
T ss_dssp HHHHH-HHHTTCCBCSHHHHHHTTGGGT-----T--CHHHHHHHHHHHHHTTCCCCCE-----------------EEECE
T ss_pred HHHHH-HHHcCCCcCCHHHHHHHHHHhh-----c--ChHHHHHHHHHHHHHhhhhhCc-----------------eEeee
Confidence 88766 9999999999999998886541 1 2579999999999999999886 24445
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEA 272 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~a 272 (479)
..++|. + + ++..+...++|+.+| .| +| .+ +.++++.||++
T Consensus 124 ~~~~g~-------~------------~-e~~~~~~~~G~~~~K----iK-------vg--------~~-d~~~v~avr~~ 163 (342)
T 2okt_A 124 ATASGL-------S------------N-KQLESLKATKPTRIK----LK-------WT--------PQ-IMHQIRVLREL 163 (342)
T ss_dssp EEESSC-------C------------H-HHHHHHHHHCCSEEE----EE-------CC--------TT-HHHHHHHHTTS
T ss_pred EEEecC-------C------------H-HHHHHHHHcCCcEEE----EE-------eC--------HH-HHHHHHHHHHh
Confidence 443221 0 1 111222234455544 34 22 23 45666666544
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+ .+ .++ +|+| +.||.+++ ++. +.+++|+|.|||||++++|++++++ +
T Consensus 164 ~----~~-~~l~vDaN-----------------------~~~~~~~A-~~~-~~l~~~~i~~iEqP~~~~d~~~~~~--~ 211 (342)
T 2okt_A 164 D----FH-FQLVIDAN-----------------------ESLDRQDF-TQL-QLLAREQVLYIEEPFKDISMLDEVA--D 211 (342)
T ss_dssp S----SC-CEEEEECT-----------------------TCCCGGGH-HHH-HHHGGGCEEEEECCCSSGGGGGGSC--T
T ss_pred C----CC-CeEEEECC-----------------------CCCCHHHH-HHH-HHHhhCCCcEEECCCCCccHHHHHH--h
Confidence 3 22 356 9984 35677888 765 4579999999999999999999998 6
Q ss_pred hh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HH
Q 011677 352 IC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FI 428 (479)
Q Consensus 352 ~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~ 428 (479)
++ +||++||+.. ++++++++++.+++|++ |+|++++||||++++++++|+++|++++++++ .|+..+ +.
T Consensus 212 ~~~ipIa~dEs~~-~~~~~~~~i~~~a~d~i------~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~-~es~i~~aa~ 283 (342)
T 2okt_A 212 GTIPPIALDEKAT-SLLDIINLIELYNVKVV------VLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGM-YEYGLSRYFT 283 (342)
T ss_dssp TSSCCEEESTTCC-CHHHHHHHHHHSCCCEE------EECHHHHTSGGGHHHHHHHHHHTTCEEEEBCS-SCCHHHHHHH
T ss_pred cCCCCEEecCCCC-CHHHHHHHHHhCCCCEE------EEChhhcCCHHHHHHHHHHHHHCCCEEEEcCC-cccHHHHHHH
Confidence 67 9999999764 59999999999999999 99999999999999999999999999877655 466554 45
Q ss_pred HHhHhhc
Q 011677 429 ADLSVGL 435 (479)
Q Consensus 429 ~dlAv~~ 435 (479)
+|||.++
T Consensus 284 ~hlaa~~ 290 (342)
T 2okt_A 284 AMLARKG 290 (342)
T ss_dssp HHHHTTS
T ss_pred HHHHHhc
Confidence 5555554
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=288.29 Aligned_cols=277 Identities=18% Similarity=0.192 Sum_probs=195.9
Q ss_pred eeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHH
Q 011677 46 VITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNI 113 (479)
Q Consensus 46 ~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i 113 (479)
+|++|+.+.+. .+.+ ++.+.|+|+ ++|++ |+||+.+++ .| +++.......+
T Consensus 3 ~i~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~----------G~GE~~~~~-----~~-g~~~~~~~~~i 65 (324)
T 1jpd_X 3 HMRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIK----------GTGECTPYP-----RY-GESDASVMAQI 65 (324)
T ss_dssp SCCEEEEEEEEEEBSCC------CCSEEEEEEEEEE-ETTEE----------EEEEECCCG-----GG-TCCHHHHHHHH
T ss_pred ceEEEEEEEEEecccccEEecCeeEEEeeEEEEEEE-eCCce----------EEEEeeCCC-----Cc-CCCHHHHHHHH
Confidence 46667766662 2222 346889998 78984 999987642 23 44555555556
Q ss_pred HHHHHHhhc-CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 114 NERISEALV-GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 114 ~~~l~p~Li-G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+ .+.|.|+ |++ .+.+++.+ . ..+|++|||+||||+.||..|+|||++||| .. .+.|+|.|
T Consensus 66 ~-~~~~~l~~~~~---~~~~~~~~------~-----~~~a~~aid~AlwDl~~k~~g~Pl~~llGg---~~-~~~~~~~~ 126 (324)
T 1jpd_X 66 M-SVVPQLEKGLT---REELQKIL------P-----AGAARNALDCALWDLAARRQQQSLADLIGI---TL-PETVITAQ 126 (324)
T ss_dssp H-TTHHHHHTTCC---HHHHHHHS------C-----SSHHHHHHHHHHHHHHHHTTTCCHHHHHTC---CC-CSEEEBCE
T ss_pred H-HHHHHHhcCCC---HHHHHHhC------c-----cHHHHHHHHHHHHHHHHHHhCCcHHHHhCC---CC-CCCcceeE
Confidence 5 4778774 654 45554432 1 147999999999999999999999999998 22 34677777
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEA 272 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~a 272 (479)
++ ++| +. | ...+++.+...++|+++| .|.| . +.+.+.++.||++
T Consensus 127 ~~-~~~-------~~-e--------~~~~~a~~~~~~G~~~~K----iKvg-------~--------~~d~~~v~avr~~ 170 (324)
T 1jpd_X 127 TV-VIG-------TP-D--------QMANSASTLWQAGAKLLK----VKLD-------N--------HLISERMVAIRTA 170 (324)
T ss_dssp EE-CSC-------CH-H--------HHHHHHHHHHHTTCSEEE----EECC-------S--------SCHHHHHHHHHHH
T ss_pred Ee-eCC-------CH-H--------HHHHHHHHHHHcCCCEEE----EEeC-------C--------chHHHHHHHHHHh
Confidence 75 222 11 1 123455555566676665 3433 1 2346677777665
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+ + + .++ +|+| +.||.+++++++ +.+++|+|.|||||++++|+++|++++
T Consensus 171 ~---~-~-~~l~vDaN-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~- 220 (324)
T 1jpd_X 171 V---P-D-ATLIVDAN-----------------------ESWRAEGLAARC-QLLADLGVAMLEQPLPAQDDAALENFI- 220 (324)
T ss_dssp C---T-T-SEEEEECT-----------------------TCCCSTTHHHHH-HHHHHTTCCEEECCSCTTSCGGGGSSC-
T ss_pred C---C-C-CEEEEECc-----------------------CCCCHHHHHHHH-HHHHhCCCCEEECCCCCCCHHHHHhcc-
Confidence 4 1 2 356 9984 245667888765 468999999999999999999999885
Q ss_pred hh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHH
Q 011677 352 IC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIAD 430 (479)
Q Consensus 352 ~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~d 430 (479)
+ +||++||+. +++++++++++. +|++ ++|++++||+|++++++++|+++|++++++|+ .|+..+..+.
T Consensus 221 -~~ipIa~dE~~-~~~~~~~~~~~~--~~~i------~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~-~es~i~~aa~ 289 (324)
T 1jpd_X 221 -HPLPICADESC-HTRSNLKALKGR--YEMV------NIKLDKTGGLTEALALATEARAQGFSLMLGCM-LCTSRAISAA 289 (324)
T ss_dssp -CSSCEEESTTC-SSGGGHHHHBTT--BSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEECCC-SCCHHHHHHH
T ss_pred -CCCCEEEcCCC-CCHHHHHHHHhh--CCEE------EEcchhhCcHHHHHHHHHHHHHcCCcEEEeCc-chHHHHHHHH
Confidence 6 999999986 568999999854 8999 99999999999999999999999999987665 5676655544
Q ss_pred hHhhc
Q 011677 431 LSVGL 435 (479)
Q Consensus 431 lAv~~ 435 (479)
++++.
T Consensus 290 ~~la~ 294 (324)
T 1jpd_X 290 LPLVP 294 (324)
T ss_dssp GGGGG
T ss_pred HHHhh
Confidence 44443
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=264.93 Aligned_cols=264 Identities=15% Similarity=0.066 Sum_probs=190.4
Q ss_pred eeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHH
Q 011677 46 VITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNI 113 (479)
Q Consensus 46 ~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i 113 (479)
+|++|+.+.+. .+.+ +..+.|+|+|+ |++ ||||+.++ +.|++++...+...+
T Consensus 2 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td-G~~----------G~GE~~~~-----~~~~~e~~~~~~~~l 65 (322)
T 1r6w_A 2 HMRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREG-ERE----------GWGEISPL-----PGFSQETWEEAQSVL 65 (322)
T ss_dssp CCEEEEEEEEEEEBCTTCBC-CCBCCEEEEEEEEEEET-TEE----------EEEEECCC-----TTTCSSCHHHHHHHH
T ss_pred cceEEEEEEEEEeccCCeEeccEEEEeeeEEEEEEEEC-CeE----------EEEEecCC-----CCCCccCHHHHHHHH
Confidence 57788877773 2222 45789999986 984 99998764 357778888888888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEE
Q 011677 114 NERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFT 193 (479)
Q Consensus 114 ~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~ 193 (479)
++.+.|.|+|+ .+ +.+ ...|++|||+||||+.||..|+|+|+ ++|+ |
T Consensus 66 ~~~~~~~l~g~--~~----------l~~-------~~~a~~aid~ALwDl~gk~~g~p~~~-----------~v~~--~- 112 (322)
T 1r6w_A 66 LAWVNNWLAGD--CE----------LPQ-------MPSVAFGVSCALAELTDTLPQAANYR-----------AAPL--C- 112 (322)
T ss_dssp HHHHHHHTTSC--CC----------CCS-------SHHHHHHHHHHHHHHTTCSCCCSCCC-----------CCCE--E-
T ss_pred HHHHHHhhCCh--hh----------ccc-------ChHHHHHHHHHHHHhcCCCCCCCccc-----------eEEE--e-
Confidence 88899999998 21 111 24699999999999999999988751 2333 2
Q ss_pred eecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHH
Q 011677 194 VISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAI 273 (479)
Q Consensus 194 ~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai 273 (479)
.+ +.+ ...+++.+. ++|+.+| .|.| . .+.+.+.+.++.||+++
T Consensus 113 ---~~-------~~~---------~~~~~a~~~--~G~~~~K----iKvG-------~-----~~~~~d~~~v~avr~~~ 155 (322)
T 1r6w_A 113 ---NG-------DPD---------DLILKLADM--PGEKVAK----VRVG-------L-----YEAVRDGMVVNLLLEAI 155 (322)
T ss_dssp ---CS-------CHH---------HHHHHHHTC--CSSEEEE----EECS-------S-----SCHHHHHHHHHHHHHHC
T ss_pred ---CC-------CHH---------HHHHHHHHh--CCCceEE----EEeC-------C-----CCHHHHHHHHHHHHHhC
Confidence 11 001 112222221 3454444 3433 1 12234455666665544
Q ss_pred HhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhC---CceeeecCCCccCHHHHHHH
Q 011677 274 NRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADY---PIVSIEDPFDKEDWEHTKSV 349 (479)
Q Consensus 274 ~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~---~i~~iEdP~~~~D~~g~~~L 349 (479)
+ + .++ +|+| +.||.++++++. +.+++| ++.|||||++ ++++|++|
T Consensus 156 ---~-~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~~~~i~~iEqP~~--~~~~~~~l 204 (322)
T 1r6w_A 156 ---P-D-LHLRLDAN-----------------------RAWTPLKGQQFA-KYVNPDYRDRIAFLEEPCK--TRDDSRAF 204 (322)
T ss_dssp ---T-T-EEEEEECT-----------------------TCBCHHHHHHHH-HTSCTTTGGGEEEEECCBS--SHHHHHHH
T ss_pred ---C-C-CeEEEeCC-----------------------CCCCHHHHHHHH-HHhhhhccCCeeEEECCCC--ChHHHHHH
Confidence 2 2 345 9984 367889999875 567998 9999999997 58899999
Q ss_pred Hhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCc--hh
Q 011677 350 LQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETE--DS 426 (479)
Q Consensus 350 ~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~--d~ 426 (479)
++++ +||++||+..+ .+ + +.++.+++|++ ++|++++||+|++++++++|+++|++++++|+. |+. .+
T Consensus 205 ~~~~~ipIa~dE~~~~-~~-~-~~~~~~a~d~i------~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~-es~ig~a 274 (322)
T 1r6w_A 205 ARETGIAIAWDESLRE-PD-F-AFVAEEGVRAV------VIKPTLTGSLEKVREQVQAAHALGLTAVISSSI-ESSLGLT 274 (322)
T ss_dssp HHHHCCCEEESGGGGS-TT-C-CCCCCTTEEEE------EECHHHHCCHHHHHHHHHHHHHTTCEEEEBCSS-CCHHHHH
T ss_pred HHhCCCCEEeCCCCCC-hh-H-hhhhcCCCCEE------EECchhcCCHHHHHHHHHHHHHcCCcEEEECcc-ccHHHHH
Confidence 9999 99999998766 44 5 66789999999 999999999999999999999999999887765 665 46
Q ss_pred HHHHhHhhcC
Q 011677 427 FIADLSVGLA 436 (479)
Q Consensus 427 ~~~dlAv~~~ 436 (479)
+.+|||.++.
T Consensus 275 a~~hlaa~~~ 284 (322)
T 1r6w_A 275 QLARIAAWLT 284 (322)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 7788887774
|
| >4gfi_A Mandelate racemase/muconate lactonizing enzyme FA protein; putative L-Ala-L/D-Glu epimerase; HET: GLU; 1.90A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=258.66 Aligned_cols=268 Identities=15% Similarity=0.124 Sum_probs=183.2
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
..+|.|+|+ ++|++ ||||+.+++ .| +++.+++...++....+.+.|.+. +..+ ...
T Consensus 30 ~~~v~V~i~-d~G~~----------G~GE~~p~~-----~~-get~e~~~~~l~~~~~~~~~~~~~---~~~~----~~~ 85 (329)
T 4gfi_A 30 ADVVTCTIR-DGSFT----------GIGECVPYP-----RY-GESIEGVTADIEAMADRVAAGLTR---QELQ----QVM 85 (329)
T ss_dssp EEEEEEEEE-ETTEE----------EEEEECCCG-----GG-TCCHHHHHHHHHTTHHHHHHTCCH---HHHH----HHS
T ss_pred eEEEEEEEE-ECCEE----------EEEeccCCC-----CC-CcCHHHHHHHHHHHhhhhccccch---hhHH----hhc
Confidence 346888985 78984 999998752 34 577888888787766777767543 2222 111
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
+ + ..|++|||+||||+.||..|+|+|++||| ..+.++|+ +..++.+ +.
T Consensus 86 ~--~-----~~a~aaid~AlwDl~gk~~g~pl~~llgG---~~~~~v~~--~~~~~~~--------------------~~ 133 (329)
T 4gfi_A 86 K--P-----GAARNAVDCALWDLEAKMSGKRAAEQVLG---QPAQPLVT--AYTISLA--------------------DP 133 (329)
T ss_dssp C--S-----SHHHHHHHHHHHHHHHHHHSCCHHHHHHS---SCCCCEEC--CEEECCC--------------------CH
T ss_pred c--c-----HHHHHHHHHHHHHHHhhhcCCChhHHhCC---CCCCceee--eecccCC--------------------Ch
Confidence 1 1 35999999999999999999999999998 33344444 4433221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
++......+ ..|....+++. + + .++.+.++.+|+ +|.+ .++ ||+|
T Consensus 134 ~~~~~~~~~-----------~~~~~~~Kik~--g--~--~~d~~~v~~vr~----~g~d-~~l~vDaN------------ 179 (329)
T 4gfi_A 134 DTMAAKTAE-----------NAGRPLLKIKT--G--T--ADDEARLRAVRA----AAPE-ARIIIDAN------------ 179 (329)
T ss_dssp HHHHHHHHH-----------TTTSSEEEEEC--C--S--SCCHHHHHHHHH----HCTT-SEEEEECT------------
T ss_pred HHHHHHHHh-----------hccccEEEecC--C--c--ccHHHHHHHHHH----hccC-CeEEEEcC------------
Confidence 121111111 11222222221 0 1 235677766654 3544 456 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.++++++. +.+++|++.|||||++++|.+++. +.+. +||+.||+..+ ++++.+. .+++
T Consensus 180 -----------~~w~~~~A~~~~-~~l~~~~i~~iEqP~~~~~~~~~~--~~~~~ipia~dEs~~~-~~d~~~~--~~a~ 242 (329)
T 4gfi_A 180 -----------EGWNDDNIEYYL-KLAAELKISLIEQPLPAGKDAMLA--RIEHPVLICADESVHS-TEDLAGL--RDRY 242 (329)
T ss_dssp -----------TCCCTTTHHHHH-HHHHHTTCCEEECCSCTTSCGGGG--GSCCSSEEEESTTCCT-GGGSGGG--TTTC
T ss_pred -----------CCCCHHHHHHHH-HhhhhcCceEEEecCCCccHHHHH--HhcCCCCchhccCCCC-HHHHHHH--hhcc
Confidence 356778888765 557999999999999999987653 4455 99999998654 7777664 4689
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCccc
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKA 442 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~ 442 (479)
|++ |+|++++||||++++++++|+++|+++|++++ .|+..+..+.++++...+++-.
T Consensus 243 d~i------~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~-~es~i~~aa~~~la~~~~~~dl 299 (329)
T 4gfi_A 243 DAI------NIKLDKTGGLTEALVMKAEAERLGFTIMVGCM-LGTSLGMAPAVLVAQGTAFADL 299 (329)
T ss_dssp SEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEECCC-SCCHHHHHHHHHHTTTCSEECC
T ss_pred CeE------EecCceeCCHHHHHHHHHHHHHCCCEEEECCc-chhHHHHHHHHHHHhCCCeecc
Confidence 999 99999999999999999999999999987654 5776666666666655666543
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-30 Score=261.14 Aligned_cols=284 Identities=15% Similarity=0.119 Sum_probs=190.1
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
+..+.|+|+|++|++ |+||+.++ +.|.++++.+++..+ +.+.|.| +|.+.+.+|+ .
T Consensus 28 ~~~~lV~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~~-~~l~~~l---~~~~~~~~~~---~-- 83 (332)
T 2ozt_A 28 RSGIYLRLEDEQGQV----------GYGEIAPL-----PGWGSETLNADIALC-QQLPGHL---TPEIMATIPE---A-- 83 (332)
T ss_dssp EEEEEEEEECTTSCE----------EEEEECCC-----TTSSSCCHHHHHHHH-HHSCSEE---CHHHHTTSCT---T--
T ss_pred eeEEEEEEEECCCCE----------EEEEecCC-----CCCCcccHHHHHHHH-HHhhccC---CHHHHHHHHH---H--
Confidence 457899999999984 99998764 346777777776654 3455544 4433222221 1
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
+ ..|++|||+||| +.|| ||+ ..+ + +.|+...+ ......
T Consensus 84 -------~-~~a~~aid~Al~-l~gk---------lgg---~~~---~-~~y~~~~~-----------------~~e~~~ 121 (332)
T 2ozt_A 84 -------L-PAAQFGFATAWQ-SVGR---------LPY---RVR---P-WPICALLG-----------------SGQAAL 121 (332)
T ss_dssp -------C-HHHHHHHHHHHH-HTTT---------CSC---CCC---C-CCBCEEEC-----------------TGGGHH
T ss_pred -------h-HHHHHHHHHHHH-Hhcc---------cCC---CCC---C-cceEEecC-----------------ChHHHH
Confidence 1 248899999999 7777 454 222 3 33432111 112234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.+...++|+.+| .|.| . .+.+.+.+.++.||+++ |.+ .++ +|+|
T Consensus 122 ~~a~~~~~~G~~~~K----iKvg-------~-----~~~~~d~~~v~avr~~~---g~~-~~L~vDaN------------ 169 (332)
T 2ozt_A 122 EQWQQSWQRGQTTFK----WKVG-------V-----MSPEEEQAILKALLAAL---PPG-AKLRLDAN------------ 169 (332)
T ss_dssp HHHHHHHHTTCCEEE----EECS-------S-----SCHHHHHHHHHHHHHHS---CTT-CEEEEECT------------
T ss_pred HHHHHHHHcCCcEEE----EEeC-------C-----CChHHHHHHHHHHHHHc---CCC-CEEEEccc------------
Confidence 455555555665555 4533 1 11223345555555544 654 456 8984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhC---CceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADY---PIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLI 375 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~---~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~ 375 (479)
+.||.+++++++.. +++| +|.|||||++++|+++|++|++++ +||++||+. .++++++++++.
T Consensus 170 -----------~~~~~~~A~~~~~~-l~~~~~~~i~~iEqP~~~~d~~~~~~l~~~~~ipIa~dEs~-~~~~~~~~~~~~ 236 (332)
T 2ozt_A 170 -----------GSWDRATANRWFAW-LDRHGNGKIEYVEQPLPPDQWQALLSLAQTVTTAIALDESV-VSAAEVQRWVDR 236 (332)
T ss_dssp -----------TCCCHHHHHHHHHH-HHHHCCTTEEEEECCSCTTCHHHHHHHHHHCSSCEEESTTC-CSHHHHHHHHHT
T ss_pred -----------CCCCHHHHHHHHHH-HHhhccCCcceeECCCCCCCHHHHHHHHHhCCCCEEeCCCC-CCHHHHHHHHHh
Confidence 36789999988755 7999 999999999999999999999999 999999975 469999999999
Q ss_pred CCCceecccCCCCcCccccccHHHHHHHHHHHhhC--CCeEEEecCCCCCch--hHHHHhHhhcCCCCcccCCCCc----
Q 011677 376 PLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDV--PWGVVISHRSGETED--SFIADLSVGLASGQIKAGAPCR---- 447 (479)
Q Consensus 376 ~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~--g~~~~v~h~~get~d--~~~~dlAv~~~~~~ik~G~~~~---- 447 (479)
+++|++ ++|++++||++ +++++|+++ |+++|++|+. ||.. ++.+|||.++.+. ..+| ...
T Consensus 237 ~a~~~i------~ik~~~~GGi~---~i~~~A~~~~~gi~~~~~~~~-es~i~~aa~~hlaa~~~~~-~~~g-l~t~~~~ 304 (332)
T 2ozt_A 237 GWPGFF------VIKTALFGDPD---SLSLLLRRGLEPQRLVFSSAL-EGAIARTAIFHLLETWQPC-HALG-FGVDRWR 304 (332)
T ss_dssp TCCSEE------EECHHHHSCHH---HHHHHHHTTCCGGGEEEBCCS-CCHHHHHHHHHHHHHHCCC-SCBB-CCCTTTC
T ss_pred CCCCEE------EEChhhhCCHH---HHHHHHHHhCCCCcEEEeCCc-chHHHHHHHHHHHHhCCCC-cCCc-CCchhhc
Confidence 999999 99999999998 678899999 9999998774 7755 4577888876532 1222 111
Q ss_pred -hhHHHHhHHHHHHHHHhCCC
Q 011677 448 -GERLAKYNQLLHIEEELGDH 467 (479)
Q Consensus 448 -~er~~kyn~ll~ie~~l~~~ 467 (479)
.+----+|..-++++..++.
T Consensus 305 ~~~g~l~~~~~~~~w~~~~~~ 325 (332)
T 2ozt_A 305 SAPLLTTLTAYERLWERLDQE 325 (332)
T ss_dssp CCCCCCSHHHHHHHHHTC---
T ss_pred ccCCcccccCHHHHHHHhhhc
Confidence 00001156666788776654
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-28 Score=249.21 Aligned_cols=236 Identities=11% Similarity=0.029 Sum_probs=166.0
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
++.+.|+|+|++|++ |+||+.++ +.|.++++.. .+.+ .| |
T Consensus 26 ~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~---~l~~----~l--------------l---- 65 (330)
T 3caw_A 26 REGVLLKVEWNDGLY----------GFADLHPW-----PELGDLSLEE---QLSD----LR--------------M---- 65 (330)
T ss_dssp EEEEEEEEECTTSCE----------EEEEECCC-----GGGTCCCHHH---HHHH----HH--------------H----
T ss_pred eeEEEEEEEECCCCE----------EEEeecCC-----CCcCcccHHH---HHHH----HH--------------h----
Confidence 457899999999984 99998764 2356666543 2332 22 1
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
+. ....|++|||+||||+.||..|+|||+ || .++|+ |..+++..+ . +.+
T Consensus 66 ~~-----~~~~a~said~AlwDl~gk~~g~Pl~~--Gg------~~v~~--~~~~~~~~~--~--~~~------------ 114 (330)
T 3caw_A 66 GR-----MTTQIEQSIWLARRDALLRKEKKHVFD--GG------EKIKN--NYLLSHFQD--L--KPG------------ 114 (330)
T ss_dssp TC-----CCHHHHHHHHHHHHHHHHHHTTCBTTT--TS------CCCCB--CEEECTTSC--C--CTT------------
T ss_pred cc-----chHHHHHHHHHHHHHHHHHHcCCcccc--CC------CceEE--EEEecCCCC--C--CHH------------
Confidence 11 225799999999999999999999999 65 24455 444321000 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+..+...++|+.+| .|.| . +.+.+.++++.||+ .+ .++ +|+|
T Consensus 115 -~~~~~~~~G~~~~K----iKvg-------~------~~~~d~~~v~avr~------~~-~~l~vDaN------------ 157 (330)
T 3caw_A 115 -FLDGLKNEGYNTVK----VKMG-------R------DLQKEADMLTHIAA------SG-MRMRLDFN------------ 157 (330)
T ss_dssp -HHHHHHHHTCCEEE----EECS-------S------CHHHHHHHHHHHHH------TT-CEEEEECT------------
T ss_pred -HHHHHHHcCCcEEE----EecC-------C------CHHHHHHHHHHHhC------CC-CeEEEECC------------
Confidence 11133345566665 4533 1 12233444444443 22 356 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhh---CCceeeecCCCcc-CHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCAD---YPIVSIEDPFDKE-DWEHTKSVLQICQQVVGDDLLMSNPKRIERATLI 375 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~---~~i~~iEdP~~~~-D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~ 375 (479)
+.||.++++++.. .+++ |++.|||||++++ |++++ |+ +++||++||+ ++++++++++.
T Consensus 158 -----------~~~~~~~A~~~~~-~l~~~~~~~l~~iEqP~~~~~d~~~~--l~-~~iPIa~dEs---~~~~~~~~i~~ 219 (330)
T 3caw_A 158 -----------ALGSWQTFEKFMV-NLPLTVRPLIEYVEDPFPFDFHAWGE--AR-KLAKIALDNQ---YDKVPWGKIAS 219 (330)
T ss_dssp -----------TCSCHHHHHHHHH-TSCTTTGGGEEEEECCSSCCHHHHHH--HT-TTSCEEESTT---GGGCCTTTCSS
T ss_pred -----------CCCCHHHHHHHHH-HhhhhccCCceEEECCCCCCccHHHH--HH-hcCcEEeCCC---CHHHHHHHHHc
Confidence 3678999998764 5788 9999999999999 99999 77 3399999997 48999999999
Q ss_pred CCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHh
Q 011677 376 PLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSV 433 (479)
Q Consensus 376 ~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv 433 (479)
+++|++ |+|++++ |+| +++++|+++|+++++++ +.|+.. ++.+|||.
T Consensus 220 ~a~d~v------~~k~~~~-Gi~---~i~~~A~~~gi~~~~~~-~~es~ig~aa~~hlaa 268 (330)
T 3caw_A 220 APFDVI------VIKPAKT-DVD---KAVAQCQKWNLKLAVTS-YMDHPVGVVHAVGVAM 268 (330)
T ss_dssp CSCSEE------EECTTTS-CHH---HHHHHHHHTTCEEEEBC-CSCCHHHHHHHHHHHH
T ss_pred CCCCEE------Eechhhc-cHH---HHHHHHHHcCCcEEEeC-ccCcHHHHHHHHHHHc
Confidence 999999 9999999 999 99999999999986654 457654 46678877
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-22 Score=198.82 Aligned_cols=137 Identities=17% Similarity=0.196 Sum_probs=101.5
Q ss_pred CchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCC
Q 011677 260 SSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338 (479)
Q Consensus 260 ~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~ 338 (479)
+.+.+.++.||+++ |.+ .++ +|+| +.||.++++++. +.+++|+|.|||||+
T Consensus 108 ~~d~~~v~avR~~~---G~~-~~L~vDaN-----------------------~~w~~~~A~~~~-~~L~~~~l~~iEqP~ 159 (327)
T 2opj_A 108 ANDVARVEAVRDAL---GPR-GRVRIDVN-----------------------GAWDVDTAVRMI-RLLDRFELEYVEQPC 159 (327)
T ss_dssp -CHHHHHHHHHHHH---CTT-SEEEEECT-----------------------TCSCHHHHHHHH-HHHGGGCEEEEECCS
T ss_pred HHHHHHHHHHHHHh---CCC-CEEEEECC-----------------------CCCCHHHHHHHH-HHHHhcCCcEEeCCC
Confidence 45567777777776 644 456 9984 367889999875 457999999999999
Q ss_pred CccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEe
Q 011677 339 DKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 339 ~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~ 417 (479)
+ +++++++|++++ +||++||+.. ++++++++++.+++|++ |+|++++||||+++++++ .+|++++++
T Consensus 160 ~--~~~~~~~l~~~~~iPIa~dEs~~-~~~~~~~~i~~~a~d~i------~ik~~~~GGit~~~~ia~---~~gi~~~~~ 227 (327)
T 2opj_A 160 A--TVDELAEVRRRVSVPIAADESIR-RAEDPLRVRDAEAADVV------VLKVQPLGGVRAALRLAE---ECGLPVVVS 227 (327)
T ss_dssp S--SHHHHHHHHHHCSSCEEC------------CTTTTTCCSBE------EECHHHHTSHHHHHHHHH---HTCSCEEEB
T ss_pred C--CHHHHHHHHhhCCCCEEcCCCCC-CHHHHHHHHHhCCCCEE------EeCccccCCHHHHHHHHH---HcCCcEEEc
Confidence 7 589999999999 9999999865 58999999999999999 999999999999998864 469998776
Q ss_pred cCCCCCchh--HHHHhHhhcCC
Q 011677 418 HRSGETEDS--FIADLSVGLAS 437 (479)
Q Consensus 418 h~~get~d~--~~~dlAv~~~~ 437 (479)
++ .|+..+ +.+|||.++..
T Consensus 228 ~~-~es~ig~aa~~hlaaa~~~ 248 (327)
T 2opj_A 228 SA-VETSVGLAAGVALAAALPE 248 (327)
T ss_dssp CC-SCCHHHHHHHHHHHHHSSC
T ss_pred CC-CcCHHHHHHHHHHHHhCCC
Confidence 55 576554 45677766543
|
| >4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3.5e-06 Score=67.04 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=38.2
Q ss_pred hHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhc
Q 011677 3 VQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKA 42 (479)
Q Consensus 3 ~~~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~ 42 (479)
+++|+++|+|++.|++++-+++..||+||+.||++||.++
T Consensus 40 ce~YlqkhgI~eLLqe~tv~Ll~~RPeDPv~FLaeYF~kL 79 (95)
T 4f9k_A 40 CELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKL 79 (95)
T ss_dssp THHHHHHTCTTTTTHHHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999964
|
| >2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=9.7e-05 Score=52.75 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=37.2
Q ss_pred chHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhcC
Q 011677 2 SVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAV 43 (479)
Q Consensus 2 ~~~~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~~ 43 (479)
|++.|.--++++..|++...+++.++|.||+.|.++||.++.
T Consensus 5 ~~~~~~ip~~l~~lL~~~~~evlr~qP~Di~~Faa~yF~~l~ 46 (50)
T 2kyg_A 5 SMSHIQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLR 46 (50)
T ss_dssp TTCCCCCCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred ccchhcCCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 445566788999999999999999999999999999999753
|
| >3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00053 Score=49.68 Aligned_cols=40 Identities=15% Similarity=0.444 Sum_probs=35.0
Q ss_pred chHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhc
Q 011677 2 SVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKA 42 (479)
Q Consensus 2 ~~~~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~ 42 (479)
.+.+|+.++ |-..|-++|.++.++||.||+.|||+|+-+.
T Consensus 8 p~R~YL~~~-V~p~L~~GL~~lak~rP~DPi~~LA~~Ll~~ 47 (55)
T 3g36_A 8 PTRAYLDQT-VVPILLQGMAVLAKERPPNPIEFLASYLLKN 47 (55)
T ss_dssp CHHHHHHTT-THHHHHHHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHH-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 467899776 7778889999999999999999999999864
|
| >2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0004 Score=47.32 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=32.1
Q ss_pred hccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhcC
Q 011677 9 KHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAV 43 (479)
Q Consensus 9 ~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~~ 43 (479)
-++++..|++...+++.++|.|++.+.++||.++.
T Consensus 4 p~~l~~lL~~~~~~vl~~qP~di~~f~a~yF~~l~ 38 (41)
T 2izx_A 4 PPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLR 38 (41)
T ss_dssp CTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999753
|
| >2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00052 Score=49.69 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhcC
Q 011677 5 EYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAV 43 (479)
Q Consensus 5 ~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~~ 43 (479)
.|.--++++..|++...+++.++|.||+.|.++||.++.
T Consensus 3 ~~~ip~~l~~lL~~f~~evlr~qP~Di~~Faa~YF~~L~ 41 (54)
T 2izy_A 3 HIQIPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLR 41 (54)
T ss_dssp --CCCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455578899999999999999999999999999999754
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.044 Score=54.50 Aligned_cols=131 Identities=18% Similarity=0.105 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCc-cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDK-EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI 391 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~-~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~ 391 (479)
+.+..++...+ +.+.+-..+--.++. ++-+.+.++++++ +|+++|-.| +++.+...++.+ +|.+ .|.|
T Consensus 44 D~~atv~Qi~~-l~~aG~diVRvavp~~~~a~al~~I~~~~~vPlvaDiHf--~~~lal~a~e~G-~dkl------RINP 113 (366)
T 3noy_A 44 DVEATLNQIKR-LYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPVIADIHF--APSYAFLSMEKG-VHGI------RINP 113 (366)
T ss_dssp CHHHHHHHHHH-HHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCEEEECCS--CHHHHHHHHHTT-CSEE------EECH
T ss_pred CHHHHHHHHHH-HHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCEEEeCCC--CHHHHHHHHHhC-CCeE------EECC
Confidence 55666655555 566676666666654 6678999999999 999999754 578777777654 8889 9999
Q ss_pred cccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhC
Q 011677 392 NQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELG 465 (479)
Q Consensus 392 ~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~ 465 (479)
..+|.-....++++.|+++|+++.+|-++|.-+..... |.|.|.....+.---+.+++.|+++
T Consensus 114 GNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~-----------~yg~~~~eamVeSAl~~~~~~e~~g 176 (366)
T 3noy_A 114 GNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLE-----------KYGYPSAEALAESALRWSEKFEKWG 176 (366)
T ss_dssp HHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHH-----------HHSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHH-----------hcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 99999888899999999999999999777654433222 2234433334444444555555553
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.78 Score=45.74 Aligned_cols=68 Identities=13% Similarity=0.002 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecCC------------CccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDPF------------DKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP~------------~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
.++.++.+++. +.+++.++.||+-.. +..+++..+++++.+ +||++.... +++++++++++.+.+
T Consensus 235 g~~~~~~~~la-~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi-~t~e~a~~~l~~G~a 312 (349)
T 3hgj_A 235 GWSLEDTLAFA-RRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLI-TTPEQAETLLQAGSA 312 (349)
T ss_dssp SCCHHHHHHHH-HHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSC-CCHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCC-CCHHHHHHHHHCCCc
Confidence 56888888764 567899999998542 224677788999988 998877754 459999999999999
Q ss_pred cee
Q 011677 379 MLF 381 (479)
Q Consensus 379 d~v 381 (479)
|.|
T Consensus 313 D~V 315 (349)
T 3hgj_A 313 DLV 315 (349)
T ss_dssp SEE
T ss_pred eEE
Confidence 998
|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.38 E-value=0.0027 Score=64.44 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=38.3
Q ss_pred hHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhcC
Q 011677 3 VQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAV 43 (479)
Q Consensus 3 ~~~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~~ 43 (479)
.+.|+++|+|++.|++++-+++.++|+||+.|+.+||.+.-
T Consensus 18 ~~~y~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~l~ 58 (381)
T 4din_B 18 CELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLE 58 (381)
T ss_dssp SCCCSSSSCCSCCCCCCCSCSSCSSSSCSSTTSSSCSCSSC
T ss_pred HHHHhhhhChHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 46799999999999999999999999999999999999854
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=88.88 E-value=1.1 Score=44.49 Aligned_cols=68 Identities=9% Similarity=-0.060 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHhhCCceeee--------c--CCCc-cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIE--------D--PFDK-EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAM 379 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iE--------d--P~~~-~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d 379 (479)
.++.++.+++. +.+++.++.||+ + |..+ .+++..+++++.+ +||++.... ++++++.++++.+.+|
T Consensus 225 g~~~~~~~~~a-~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi-~s~~~a~~~l~~G~aD 302 (338)
T 1z41_A 225 GLDIADHIGFA-KWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMI-TDGSMAEEILQNGRAD 302 (338)
T ss_dssp SCCHHHHHHHH-HHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSC-CSHHHHHHHHHTTSCS
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCC-CCHHHHHHHHHcCCce
Confidence 56788888764 567899999988 2 3333 3677788999998 998876654 4599999999999999
Q ss_pred ee
Q 011677 380 LF 381 (479)
Q Consensus 380 ~v 381 (479)
.|
T Consensus 303 ~V 304 (338)
T 1z41_A 303 LI 304 (338)
T ss_dssp EE
T ss_pred EE
Confidence 99
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=85.42 E-value=2.3 Score=41.08 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecCC---------CccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCcee
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDPF---------DKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLF 381 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP~---------~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v 381 (479)
.++.++.++++. .+++.++..||--+ -.++++-.+.+++.. ++++.= ..+.++++++++.+ ++.|
T Consensus 22 ~~~~e~k~~i~~-~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l---~~n~~~i~~a~~~G-~~~V 96 (295)
T 1ydn_A 22 FVPTADKIALIN-RLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVL---VPNMKGYEAAAAAH-ADEI 96 (295)
T ss_dssp CCCHHHHHHHHH-HHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEE---CSSHHHHHHHHHTT-CSEE
T ss_pred CcCHHHHHHHHH-HHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHCC-CCEE
Confidence 468899998764 57899999999843 125666667776543 444321 14688899988876 4555
Q ss_pred cccCCCCcC-------------ccccccHHHHHHHHHHHhhCCCeEE--EecCC-----CCCchhHHHHh---HhhcCCC
Q 011677 382 FSRYPSNLW-------------INQIGTVTEAIEVVKLANDVPWGVV--ISHRS-----GETEDSFIADL---SVGLASG 438 (479)
Q Consensus 382 ~~~~~~~ik-------------~~~~Ggitea~~i~~~A~~~g~~~~--v~h~~-----get~d~~~~dl---Av~~~~~ 438 (479)
.+. .+.-.-+..+.+++++|+++|+.+. +++.. +.++..++.++ +..+|+.
T Consensus 97 ------~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d 170 (295)
T 1ydn_A 97 ------AVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCH 170 (295)
T ss_dssp ------EEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCS
T ss_pred ------EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 444 2233356666777899999999986 55432 23444554444 4477887
Q ss_pred CcccCCC
Q 011677 439 QIKAGAP 445 (479)
Q Consensus 439 ~ik~G~~ 445 (479)
.+.+.+.
T Consensus 171 ~i~l~Dt 177 (295)
T 1ydn_A 171 EVSLGDT 177 (295)
T ss_dssp EEEEEET
T ss_pred EEEecCC
Confidence 7764433
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=84.82 E-value=3.3 Score=41.06 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecC----------C-CccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDP----------F-DKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAM 379 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP----------~-~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d 379 (479)
.++.++.+++. +.+++. +.||+-. . +..+++-.+++++.+ +||++.... +++++++++++.+.+|
T Consensus 226 g~~~~~~~~~a-~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi-~t~e~Ae~~l~~G~aD 302 (343)
T 3kru_A 226 GINIDMMVEYI-NMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLI-TTQELAEEILSNERAD 302 (343)
T ss_dssp SCCHHHHHHHH-HHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSC-CCHHHHHHHHHTTSCS
T ss_pred CccHHHHHHHH-HHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeee-eHHHHHHHHHhchhhH
Confidence 46788888764 567888 9998863 1 223667778888888 887766544 4599999999999999
Q ss_pred ee
Q 011677 380 LF 381 (479)
Q Consensus 380 ~v 381 (479)
.|
T Consensus 303 ~V 304 (343)
T 3kru_A 303 LV 304 (343)
T ss_dssp EE
T ss_pred HH
Confidence 98
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=84.82 E-value=8.9 Score=36.45 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc
Q 011677 316 EDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG 395 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G 395 (479)
.+-.+.+.+.+++++|-++=+|+++.+.+-..++ -....|.+.+. +|...++.+.. .---| ++|-+..|
T Consensus 73 ~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kIga~~~--~n~~ll~~~a~--~~kPV------~lk~G~~~ 141 (262)
T 1zco_A 73 EKALRWMREAADEYGLVTVTEVMDTRHVELVAKY-SDILQIGARNS--QNFELLKEVGK--VENPV------LLKRGMGN 141 (262)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCCGGGHHHHHHH-CSEEEECGGGT--TCHHHHHHHTT--SSSCE------EEECCTTC
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHhHHHHHhh-CCEEEECcccc--cCHHHHHHHHh--cCCcE------EEecCCCC
Confidence 5555567888899999999999999998887777 22266666663 45665666644 34567 88999999
Q ss_pred cHHHHHHHHHHHhhCCC-eEEEecC
Q 011677 396 TVTEAIEVVKLANDVPW-GVVISHR 419 (479)
Q Consensus 396 gitea~~i~~~A~~~g~-~~~v~h~ 419 (479)
++.+++.++...+..|- .+++-|+
T Consensus 142 t~~e~~~Av~~i~~~Gn~~i~L~~R 166 (262)
T 1zco_A 142 TIQELLYSAEYIMAQGNENVILCER 166 (262)
T ss_dssp CHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 99999999999998885 6777774
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=82.49 E-value=2.8 Score=45.28 Aligned_cols=68 Identities=9% Similarity=-0.048 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhhCCceeee-------cCCC--------ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIE-------DPFD--------KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLI 375 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iE-------dP~~--------~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~ 375 (479)
.++.++++++. +.++++++.||+ .+++ ...++..+++++.+ +||++.... ++++++++.++.
T Consensus 224 g~~~~~~~~~a-~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi-~~~~~a~~~l~~ 301 (671)
T 1ps9_A 224 GGTFAETVELA-QAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRI-NDPQVADDILSR 301 (671)
T ss_dssp CCCHHHHHHHH-HHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSC-CSHHHHHHHHHT
T ss_pred CCCHHHHHHHH-HHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHc
Confidence 56788888764 557889999995 3333 12356667888888 998877754 459999999999
Q ss_pred CCCcee
Q 011677 376 PLAMLF 381 (479)
Q Consensus 376 ~a~d~v 381 (479)
+.+|.|
T Consensus 302 g~aD~V 307 (671)
T 1ps9_A 302 GDADMV 307 (671)
T ss_dssp TSCSEE
T ss_pred CCCCEE
Confidence 999988
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=81.20 E-value=3 Score=41.69 Aligned_cols=67 Identities=13% Similarity=-0.040 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHhhCCceeeecCC-----------C-ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCc
Q 011677 313 KSGEDMIEMYKELCADYPIVSIEDPF-----------D-KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAM 379 (479)
Q Consensus 313 ~t~~e~i~~~~~ll~~~~i~~iEdP~-----------~-~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d 379 (479)
++.++.+++ .+.+++.++.||+-.- . ..+++..+++++.+ +||++.... ++++++++.++.+.+|
T Consensus 243 ~~~~~~~~l-a~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI-~s~e~a~~~l~~G~aD 320 (363)
T 3l5l_A 243 QTLEESIEL-ARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGF-GTPQLAEAALQANQLD 320 (363)
T ss_dssp HHHHHHHHH-HHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSST-TSHHHHHHHHHTTSCS
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCC-CCHHHHHHHHHCCCcc
Confidence 567788876 4567889999888331 1 23567778888888 998877654 4699999999999999
Q ss_pred ee
Q 011677 380 LF 381 (479)
Q Consensus 380 ~v 381 (479)
.|
T Consensus 321 ~V 322 (363)
T 3l5l_A 321 LV 322 (363)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=80.74 E-value=17 Score=36.12 Aligned_cols=91 Identities=12% Similarity=0.142 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc
Q 011677 316 EDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG 395 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G 395 (479)
++-.+.+++.+++++|.++=+|+++.+.+-..++ -...+|.+-+. +|..-++.+-. .---| ++|-+..+
T Consensus 156 ~egl~~l~~~~~e~Gl~~~te~~d~~~~~~l~~~-vd~lkIgAr~~--~n~~LL~~va~--~~kPV------ilk~G~~~ 224 (350)
T 1vr6_A 156 EKGLEYLREAADKYGMYVVTEALGEDDLPKVAEY-ADIIQIGARNA--QNFRLLSKAGS--YNKPV------LLKRGFMN 224 (350)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHH-CSEEEECGGGT--TCHHHHHHHHT--TCSCE------EEECCTTC
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh-CCEEEECcccc--cCHHHHHHHHc--cCCcE------EEcCCCCC
Confidence 4556677888999999999999999999888887 22266666663 45666666653 34677 89999999
Q ss_pred cHHHHHHHHHHHhhCCC-eEEEe
Q 011677 396 TVTEAIEVVKLANDVPW-GVVIS 417 (479)
Q Consensus 396 gitea~~i~~~A~~~g~-~~~v~ 417 (479)
++.|+..++..+++.|- .+++-
T Consensus 225 tl~ei~~Ave~i~~~GN~~viLc 247 (350)
T 1vr6_A 225 TIEEFLLSAEYIANSGNTKIILC 247 (350)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CHHHHHHHHHHHHHCCCCeEEEE
Confidence 99999999999988875 66664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 479 | ||||
| d1w6ta1 | 296 | c.1.11.1 (A:138-433) Enolase {Streptococcus pneumo | 2e-98 | |
| d2akza1 | 294 | c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens) | 5e-97 | |
| d2ptza1 | 291 | c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [ | 5e-96 | |
| d2al1a1 | 295 | c.1.11.1 (A:142-436) Enolase {Baker's yeast (Sacch | 3e-94 | |
| d2fyma1 | 292 | c.1.11.1 (A:140-431) Enolase {Escherichia coli [Ta | 4e-92 | |
| d2akza2 | 139 | d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), | 2e-52 | |
| d2al1a2 | 141 | d.54.1.1 (A:1-141) Enolase {Baker's yeast (Sacchar | 3e-51 | |
| d2fyma2 | 139 | d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxI | 3e-51 | |
| d2ptza2 | 139 | d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [Ta | 8e-50 | |
| d1w6ta2 | 137 | d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoni | 9e-49 | |
| d1pdza2 | 139 | d.54.1.1 (A:1-139) Enolase {European lobster (Homa | 2e-46 | |
| d1kkoa1 | 251 | c.1.11.2 (A:161-411) beta-Methylaspartase {Citroba | 1e-41 | |
| d1kcza1 | 253 | c.1.11.2 (A:161-413) beta-Methylaspartase {Clostri | 2e-36 |
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 296 bits (758), Expect = 2e-98
Identities = 104/296 (35%), Positives = 160/296 (54%), Gaps = 16/296 (5%)
Query: 186 TLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAH 245
LP P +I+GG H+ +A Q+ MILP+GA +F EAL+ G+E +H LK ++ +
Sbjct: 4 VLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRG--L 61
Query: 246 GCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSK--WSDCKSSMHNIY-STKYDLDF 302
VG++GG AP +G++ + AI G K + + Y + D+
Sbjct: 62 ETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASSEFYDKERKVYDY 121
Query: 303 KSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEH----TKSVLQICQQVVG 358
G ++ + I+ +EL YPI++IED D+ DW+ T+ + + Q +VG
Sbjct: 122 TKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKVQ-LVG 180
Query: 359 DDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISH 418
DD ++N + R A + NQIGT+TE E +++A + + V+SH
Sbjct: 181 DDFFVTNTDYLARGIQEGAANSILIKV------NQIGTLTETFEAIEMAKEAGYTAVVSH 234
Query: 419 RSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGED 474
RSGETEDS IAD++V +GQIK G+ R +R+AKYNQLL IE++LG+ A Y G
Sbjct: 235 RSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLK 290
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Score = 292 bits (748), Expect = 5e-97
Identities = 157/297 (52%), Positives = 201/297 (67%), Gaps = 9/297 (3%)
Query: 183 TNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKY 242
++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+++G+E YH LK VI +KY
Sbjct: 1 SDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKY 60
Query: 243 GAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMHNIYST-KYDLD 301
G NVG++GG APNI E L+LVKEAI++ G + Y KYDLD
Sbjct: 61 GKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLD 120
Query: 302 FKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDD 360
FKSP + + +G+ + +Y++ DYP+VSIEDPFD++DW Q+VGDD
Sbjct: 121 FKSPTDPSR-YITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDD 179
Query: 361 LLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRS 420
L ++NPKRIERA L +NQIG+VTEAI+ KLA + WGV++SHRS
Sbjct: 180 LTVTNPKRIERAVEEKAC------NCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRS 233
Query: 421 GETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
GETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEEELGD A +AG ++R
Sbjct: 234 GETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRN 290
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Score = 289 bits (741), Expect = 5e-96
Identities = 137/298 (45%), Positives = 179/298 (60%), Gaps = 15/298 (5%)
Query: 184 NLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYG 243
L LPVP F VI+GGKHAGN L Q+ MI P+ A+SF EAL+MGSE YH L+ +I +KYG
Sbjct: 2 ELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYG 61
Query: 244 AHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCK---SSMHNIYSTKYDL 300
NVG++GG AP I I E L ++ EAI G S ++ +Y+L
Sbjct: 62 QDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAICMDCAASETYDEKKQQYNL 121
Query: 301 DFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQ---VV 357
FKSP + + E + E Y + DYPIVSIEDP+D++D+ + + + +V
Sbjct: 122 TFKSPEP---TWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGITEALKGKTQIV 178
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417
GDDL ++N +RI+ A + NQIGT++EAI KL + W V++S
Sbjct: 179 GDDLTVTNTERIKMAIEKKACNSLLLKI------NQIGTISEAIASSKLCMENGWSVMVS 232
Query: 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDY 475
HRSGETED++IADL V L SGQIK GAPCRGER AK NQLL IEEELG HA + +
Sbjct: 233 HRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFPGW 290
|
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 285 bits (730), Expect = 3e-94
Identities = 140/294 (47%), Positives = 188/294 (63%), Gaps = 8/294 (2%)
Query: 186 TLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAH 245
LPVP V++GG HAG LA+Q+ MI P GA +F EAL++GSE YH+LK++ ++YGA
Sbjct: 4 VLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGAS 63
Query: 246 GCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMHNIYST-KYDLDFKS 304
NVG++GG+APNI + E LDL+ +AI G + + KYDLDFK+
Sbjct: 64 AGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKN 123
Query: 305 PNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLM 363
PN + +G + ++Y L YPIVSIEDPF ++DWE + Q+V DDL +
Sbjct: 124 PNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGIQIVADDLTV 183
Query: 364 SNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGET 423
+NPKRI A + A NQIGT++E+I+ + + WGV++SHRSGET
Sbjct: 184 TNPKRIATA-IEKKAADALLLKV-----NQIGTLSESIKAAQDSFAAGWGVMVSHRSGET 237
Query: 424 EDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
ED+FIADL VGL +GQIK GAP R ERLAK NQLL IEEELGD+A++AGE++
Sbjct: 238 EDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGENFHH 291
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Score = 279 bits (716), Expect = 4e-92
Identities = 118/293 (40%), Positives = 167/293 (56%), Gaps = 17/293 (5%)
Query: 185 LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGA 244
++PVP +I+GG+HA NN+ IQ+ MI P+GA + EA++MGSE +HHL V+ K
Sbjct: 4 YSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKG-- 61
Query: 245 HGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMHNIYSTKYDLDFKS 304
VG++GG APN+ S E L ++ EA+ G K D +M S Y
Sbjct: 62 MNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGK--DITLAMDCAASEFYKDGKYV 119
Query: 305 PNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQ---QVVGDDL 361
G + E+ +EL YPIVSIED D+ DW+ ++ Q+VGDDL
Sbjct: 120 LAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDL 179
Query: 362 LMSNPKRIERATLIPLAMLFFSRYPSNLWI--NQIGTVTEAIEVVKLANDVPWGVVISHR 419
++N K ++ +++ I NQIG++TE + +K+A D + VISHR
Sbjct: 180 FVTNTKILKEG--------IEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHR 231
Query: 420 SGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAG 472
SGETED+ IADL+VG A+GQIK G+ R +R+AKYNQL+ IEE LG+ A Y G
Sbjct: 232 SGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNG 284
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Score = 171 bits (435), Expect = 2e-52
Identities = 86/137 (62%), Positives = 107/137 (78%), Gaps = 2/137 (1%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I KI AR+ILDSRG PTVEVDL+T KG+FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN I+ AL+ G+ + Q ++D M++LD TE K + GANAIL VS+A CKAG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 165 AAEKEVPLYKHIADLAG 181
AAE+E+PLY+HIA LAG
Sbjct: 122 AAERELPLYRHIAQLAG 138
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 141 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 168 bits (427), Expect = 3e-51
Identities = 76/140 (54%), Positives = 101/140 (72%), Gaps = 3/140 (2%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
++K+ AR + DSRG PTVEV+L T KG+FR+ VPSG +G++EALE+RDGDK ++G V
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 107 NRAVKNINERISEALVGMDPIL--QSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
AVKN+N+ I+ A V + + Q +D +I LD T K +LGANAIL VS+AA +A
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 165 AAEKEVPLYKHIADLAG-KT 183
AAEK VPLYKH+ADL+ KT
Sbjct: 122 AAEKNVPLYKHLADLSKSKT 141
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Score = 168 bits (427), Expect = 3e-51
Identities = 75/138 (54%), Positives = 94/138 (68%), Gaps = 1/138 (0%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
S I KI R+I+DSRG PTVE ++ G A+ PSG +G EALELRDGDK +LG
Sbjct: 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLG 60
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV +N I++AL+G D Q+ ID+ MIDLD TE K + GANAILAVS+A KA
Sbjct: 61 KGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 164 GAAEKEVPLYKHIADLAG 181
AA K +PLY+HIA+L G
Sbjct: 121 AAAAKGMPLYEHIAELNG 138
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Score = 164 bits (417), Expect = 8e-50
Identities = 76/135 (56%), Positives = 99/135 (73%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I K+ R++LDSRG PTVEV++ T KG+FR++VPSG +G+YEA ELRDGDK Y+G
Sbjct: 4 IQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGKGC 63
Query: 107 NRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAA 166
+AVKN+NE I AL+G D + Q ++D M+ LD T KG+LGANAIL S+A KA AA
Sbjct: 64 LQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAA 123
Query: 167 EKEVPLYKHIADLAG 181
K VPLY+++A LAG
Sbjct: 124 AKGVPLYRYLASLAG 138
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 161 bits (409), Expect = 9e-49
Identities = 71/133 (53%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
S+IT + AR++LDSRG PT+EV+++T G F R VPSG +G +EA+ELRDGDK Y G
Sbjct: 2 SIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGG 61
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
+AV N+N I+EA++G D Q ID+AMI LD T KG+LGANAIL VSIA +A
Sbjct: 62 LGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARA 121
Query: 164 GAAEKEVPLYKHI 176
A E+PLY ++
Sbjct: 122 AADYLEIPLYSYL 134
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Score = 155 bits (394), Expect = 2e-46
Identities = 81/136 (59%), Positives = 100/136 (73%), Gaps = 2/136 (1%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
ITK+ AR I DSRG PTVEVDL+T KG+FRA+VPSG +G++EALE+RDGDK Y G SV
Sbjct: 2 ITKVFARTIFDSRGNPTVEVDLYTSKGLFRAAVPSGASTGVHEALEMRDGDKSKYHGKSV 61
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
AVKN+N+ I ++ G+ Q + D+ M LD TE K LGANAIL VS+A CKAG
Sbjct: 62 FNAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICKAG 121
Query: 165 AAEKEVPLYKHIADLA 180
AAE +PLY+HIA+LA
Sbjct: 122 AAELGIPLYRHIANLA 137
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Score = 147 bits (371), Expect = 1e-41
Identities = 42/299 (14%), Positives = 79/299 (26%), Gaps = 71/299 (23%)
Query: 185 LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGA 244
+ +P F G+ + D MIL G AL ++++
Sbjct: 3 VPEAIPLF-----GQSGDDRYIAVDKMILK-GVDVLPHAL------INNVE--------- 41
Query: 245 HGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMHNIYSTKYD--LDF 302
+G G +RE + + + I S +Y L
Sbjct: 42 --EKLGFKGE------KLREYVRWLSDRILSLR----------------SSPRYHPTLHI 77
Query: 303 KSPNKSGQNFK-SGEDMIEMYKELCADYP--IVSIEDPFDKEDWEHTKSVLQICQ----- 354
G F E L + + IE P D + +L
Sbjct: 78 DVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTR 137
Query: 355 -----QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLAND 409
++V D+ + + I T + + +G + ++ V N
Sbjct: 138 LGSGVKIVADEWC-NTYQDIVDFTDAGSCHMV------QIKTPDLGGIHNIVDAVLYCNK 190
Query: 410 VPWGVVISHRSGETEDS--FIADLSVGLASGQI--KAGAPCRGERLAKYNQLLHIEEEL 464
ETE S +++ ++ K G +N++ L
Sbjct: 191 HGMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALL 249
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Score = 132 bits (334), Expect = 2e-36
Identities = 32/261 (12%), Positives = 78/261 (29%), Gaps = 40/261 (15%)
Query: 225 QMGSETYHHLKAVIAEKYGA--HGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSK 282
Q G + Y ++ +I ++ H + L + E + +++ I + +
Sbjct: 12 QSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVRED- 70
Query: 283 WSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELC---ADYPIVSIEDPFD 339
Y+ + +D + + + M + + L + + IE P D
Sbjct: 71 -----------YAPIFHIDVYGTIGAAFDVDI-KAMADYIQTLAEAAKPFHL-RIEGPMD 117
Query: 340 KEDW----------EHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNL 389
ED + ++V D+ + ++ T + +
Sbjct: 118 VEDRQKQMEAMRDLRAELDGRGVDAELVADEWCN-TVEDVKFFTDNKAGHMV------QI 170
Query: 390 WINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVGLASGQI--KAGAP 445
+G V + + G ET S ++ + + Q+ K G
Sbjct: 171 KTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMG 230
Query: 446 CRGERLAKYNQLLHIEEELGD 466
+ N++ + +G
Sbjct: 231 VDEGMMIVKNEMNRVLALVGR 251
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 479 | |||
| d2al1a1 | 295 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 100.0 | |
| d2akza1 | 294 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 100.0 | |
| d2ptza1 | 291 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 100.0 | |
| d1w6ta1 | 296 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 100.0 | |
| d2fyma1 | 292 | Enolase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1w6ta2 | 137 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 100.0 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 100.0 | |
| d2ptza2 | 139 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 100.0 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 100.0 | |
| d2fyma2 | 139 | Enolase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1pdza2 | 139 | Enolase {European lobster (Homarus vulgaris) [TaxI | 100.0 | |
| d2al1a2 | 141 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 100.0 | |
| d2akza2 | 139 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 100.0 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.88 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 99.87 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.87 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.86 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.86 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 99.84 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.84 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.83 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.83 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.83 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.82 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.81 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 99.81 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 99.81 | |
| d2gl5a2 | 122 | Putative dehydratase protein STM2273 {Salmonella t | 99.77 | |
| d1jpma2 | 125 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.77 | |
| d2chra2 | 126 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.76 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.74 | |
| d1nu5a2 | 126 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.74 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.74 | |
| d1wufa2 | 126 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.73 | |
| d1rvka2 | 126 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.72 | |
| d2gdqa2 | 115 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.71 | |
| d1r0ma2 | 127 | N-acylamino acid racemase {Deinococcus radiodurans | 99.66 | |
| d1wuea2 | 126 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.66 | |
| d1sjda2 | 125 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.65 | |
| d1muca2 | 127 | Muconate-lactonizing enzyme (cis muconate cycloiso | 99.64 | |
| d1yeya2 | 139 | RTS beta protein {Xanthomonas campestris pv. campe | 99.62 | |
| d1r6wa1 | 221 | O-succinylbenzoate synthase {Escherichia coli [Tax | 99.61 | |
| d1jdfa2 | 133 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.61 | |
| d1bqga2 | 132 | D-glucarate dehydratase {Pseudomonas putida [TaxId | 99.58 | |
| d2mnra2 | 130 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.58 | |
| d1tzza2 | 140 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.55 | |
| d1jpdx2 | 116 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.27 | |
| d2ezwa1 | 50 | cAMP-dependent protein kinase type I-alpha regulat | 98.25 | |
| d1r6wa2 | 101 | O-succinylbenzoate synthase {Escherichia coli [Tax | 97.93 | |
| d1kcza2 | 160 | beta-Methylaspartase {Clostridium tetanomorphum [T | 97.06 | |
| d1kkoa2 | 160 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 97.0 | |
| d2hwna1 | 39 | cAMP-dependent protein kinase type II regulatory s | 95.8 |
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-76 Score=577.58 Aligned_cols=285 Identities=51% Similarity=0.863 Sum_probs=274.8
Q ss_pred CcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchH
Q 011677 184 NLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIR 263 (479)
Q Consensus 184 ~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~ 263 (479)
+..+|+|++|+||||+|+++++++|||||+|.++.+++++++++.|+|+++|++|+.|+|...+++||+|||+|++++.+
T Consensus 2 p~~lP~P~~NIinGG~HA~~~ldiQEfmIiP~ga~sf~eal~~~~eVy~~lk~il~~k~~~~~~~vgDEGgfaP~~~~~e 81 (295)
T d2al1a1 2 PYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAE 81 (295)
T ss_dssp TEEECEEEEEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHH
T ss_pred CCCCCchheeeecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcCccccCcccCccccccCccccH
Confidence 46899999999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCC
Q 011677 264 EGLDLVKEAINRTGIPSSKW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFD 339 (479)
Q Consensus 264 ~~l~~v~~ai~~~g~~~~~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~ 339 (479)
++|+++.+|++.+|++ .+| +||||| || ++++|++++++++.+.++.+|++||+++|.+|+++|||.+|||||+
T Consensus 82 ~aL~ll~~Ai~~aGy~-~~i~i~lD~AAsefy--~~~kY~~~~~~~~~~~~~~~s~~elid~y~~li~~YPIisIEDp~~ 158 (295)
T d2al1a1 82 EALDLIVDAIKAAGHD-GKVKIGLDCASSEFF--KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFA 158 (295)
T ss_dssp HHHHHHHHHHHHHTCT-TTCEEEEECCGGGGE--ETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred HHHHHHHHHHHhcCCC-cceEEEeehhhHHHh--hCCcccccccccccCCccccchHHHHHHHHHHHHhCCEEEecCCcC
Confidence 9999999999999998 444 999999 99 5799999988877666678999999999999999999999999999
Q ss_pred ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEec
Q 011677 340 KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISH 418 (479)
Q Consensus 340 ~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h 418 (479)
++||++|++|++++ ++|+|||+++||++++++++++++||++ .||+||+||+||+++++++|+++|+.+|+||
T Consensus 159 e~D~~gw~~lt~~~g~~iVGDDl~~Tn~~rl~~~i~~~~~nai------liK~NQiGTvtEt~ea~~la~~~g~~~ivSh 232 (295)
T d2al1a1 159 EDDWEAWSHFFKTAGIQIVADDLTVTNPKRIATAIEKKAADAL------LLKVNQIGTLSESIKAAQDSFAAGWGVMVSH 232 (295)
T ss_dssp TTCHHHHHHHHTTCCSEEEESTTTTTCHHHHHHHHHTTCCSEE------EECHHHHCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccchHHHHHHhhccCceeecchhhcccchhhhcchhhhcccce------eecccchhhHHHHHHHHHHHHhcCCeeeccc
Confidence 99999999999999 9999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccC
Q 011677 419 RSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477 (479)
Q Consensus 419 ~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~ 477 (479)
|+|||+|+++||||||++++|||+|+|+|+||++||||||||||+|+++++|+|++|+|
T Consensus 233 RSGETeD~~iaDLAVg~~a~~iK~G~~~R~ER~aKyNrLLrIee~L~~~a~~~g~~~~~ 291 (295)
T d2al1a1 233 RSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGENFHH 291 (295)
T ss_dssp CSBCCSCCHHHHHHHHTTCSEEECCCSCSHHHHHHHHHHHHHHHHHGGGEEECGGGCTT
T ss_pred CCCCcCcchhhhhhHhcCCCeeeeCCCcchhHHHHHHHHHHHHHHhccccEECcccccC
Confidence 99999999999999999999999999999999999999999999999999999999987
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=100.00 E-value=9.8e-76 Score=574.22 Aligned_cols=284 Identities=56% Similarity=0.938 Sum_probs=271.6
Q ss_pred cccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHH
Q 011677 185 LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIRE 264 (479)
Q Consensus 185 ~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~ 264 (479)
..+|+|++|+|+||+|+++++++|||||+|.++.+++++++++.++|+++|+.|+.|+|...+++||||||+|++++.++
T Consensus 3 ~~lP~P~~NiinGG~HA~~~ldiQEFmIiP~ga~sf~eal~~~~eV~~~lk~~L~~k~~~~~~~vgDEGgfaP~~~~~e~ 82 (294)
T d2akza1 3 LILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSE 82 (294)
T ss_dssp CCBCEEEEEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCSCCCHHH
T ss_pred cCCCccceeeecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCceeeeccchHH
Confidence 57999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCc
Q 011677 265 GLDLVKEAINRTGIPSSKW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDK 340 (479)
Q Consensus 265 ~l~~v~~ai~~~g~~~~~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~ 340 (479)
.|+++.+|++.+|+. .+| +||||| ||+ +++|.++++++.. .++.+|++||+++|.+|+++|||.+|||||++
T Consensus 83 ~l~ll~~Ai~~ag~~-~~i~ialD~AASefy~--~~kY~~~~~~~~~-~~~~~t~delid~y~~l~~kYPIisIEDP~~E 158 (294)
T d2akza1 83 ALELVKEAIDKAGYT-EKIVIGMDVAASEFYR--DGKYDLDFKSPTD-PSRYITGDQLGALYQDFVRDYPVVSIEDPFDQ 158 (294)
T ss_dssp HHHHHHHHHHHHTCT-TTCEEEEECCGGGGEE--TTEECTTTTSSCC-GGGCBCHHHHHHHHHHHHHHSCEEEEECCSCT
T ss_pred HHHHHHHHHhccCCC-ceEEEEechhhhhhhh--cCcceeeecccCC-ccceecHHHHHHHHHHHhcccCeEEEeCCCcc
Confidence 999999999999998 554 999999 994 7889988765422 24578999999999999999999999999999
Q ss_pred cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 341 EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 341 ~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
+||++|++|++++ ++|+|||+++||++++++++++++||++ +||+||+||+||+++++++|+++|+.+++||+
T Consensus 159 ~D~~gw~~lt~~lg~~ivGDDl~vTn~~rl~kgi~~~aanai------lIK~NQiGTltEt~ea~~la~~~g~~~ivShR 232 (294)
T d2akza1 159 DDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCL------LLKVNQIGSVTEAIQACKLAQENGWGVMVSHR 232 (294)
T ss_dssp TCHHHHHHHHHTCSSEEEESTTTTTCHHHHHHHHHTTCCSEE------EECHHHHCCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cchhhHHHHHHhcCcEEEccccccccHHHHHHHHhcCcCccc------eeccccchhHHHHHHHHHHHHHcCCcEEeeCC
Confidence 9999999999999 9999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCC
Q 011677 420 SGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQC 478 (479)
Q Consensus 420 ~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 478 (479)
+|||+|+++||||||++++|||+|+|+|+||++||||||||||+|+++++|+|++|+||
T Consensus 233 sGETeD~~iaDLAVg~~a~~iK~G~~~r~ER~aKyNrLlrIee~L~~~~~~~g~~~~~~ 291 (294)
T d2akza1 233 SGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNP 291 (294)
T ss_dssp SBCCSCCHHHHHHHHHTCSEEECCCSCSHHHHHHHHHHHHHHHHHGGGCCBCGGGTTCG
T ss_pred CCCcCcchHhHHHHhcCCCeeeeCCCcchHHHHHHHHHHHHHHHhccccEeCCccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999997
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=4.3e-75 Score=569.57 Aligned_cols=283 Identities=50% Similarity=0.812 Sum_probs=269.7
Q ss_pred CcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchH
Q 011677 184 NLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIR 263 (479)
Q Consensus 184 ~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~ 263 (479)
..++|+|++|+||||+|+++++++|||||+|.++.+++|+++++.|+|+++|++|+.|++...+++||+|||+|++++.+
T Consensus 2 ~~~lP~P~~NIinGG~HA~~~ldiQEFmIiP~g~~sf~eal~~~~eV~~~lk~~L~~k~~~~~~~vgDEGGfaP~~~~~e 81 (291)
T d2ptza1 2 ELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDIN 81 (291)
T ss_dssp CCEECEEEEEEEECSTTSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTSSBCCSCCCTT
T ss_pred CCCCCcceeeEecccccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccH
Confidence 36899999999999999999999999999999999999999999999999999999998877889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-ce-eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCc
Q 011677 264 EGLDLVKEAINRTGIPSS-KW-SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDK 340 (479)
Q Consensus 264 ~~l~~v~~ai~~~g~~~~-~i-iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~ 340 (479)
++|+++.+|++.+|++++ .| ||||++ ||+.++++|+++++.+ .++.+|++||+++|.+|+++|||.+|||||++
T Consensus 82 ~aL~ll~eAi~~ag~~~~~~i~lD~AAsef~~~~~~~Y~l~~~~~---~~~~ls~~elid~y~~l~~~YPIisIEDp~~e 158 (291)
T d2ptza1 82 EPLPILMEAIEEAGHRGKFAICMDCAASETYDEKKQQYNLTFKSP---EPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQ 158 (291)
T ss_dssp THHHHHHHHHHHTTCTTSCEEEEECCGGGGEETTTTEEETTTTSS---SCCEECHHHHHHHHHHHHHHSCEEEEECCSCT
T ss_pred HHHHHHHHHHHHcCCCCCeeEEeeechHhhhhccccccccccccc---CcchhhHHHHHHHHHHHhhccceeEecCCccc
Confidence 999999999999999953 24 999999 9988889999976432 23578999999999999999999999999999
Q ss_pred cCHHHHHHHHhhh---hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEe
Q 011677 341 EDWEHTKSVLQIC---QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 341 ~D~~g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~ 417 (479)
+||++|++|++++ |+|+|||+++||+++++++++.++||.+ +||+||+||+||+++++++|+++|+.+|+|
T Consensus 159 ~D~~gw~~lt~~~g~k~~iVGDDL~vTn~~rl~~gi~~~a~Nai------LIK~NQiGTvtEt~ea~~la~~~g~~~iiS 232 (291)
T d2ptza1 159 DDFAGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSL------LLKINQIGTISEAIASSKLCMENGWSVMVS 232 (291)
T ss_dssp TCHHHHHHHHHHTTTTSEEEESTTTTTCHHHHHHHHHTTCCSEE------EECHHHHCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cchhHHHHhhhccCceEEEecCcccccchHHHhhccccCCccce------EecchhhhhHHHHHHHHHHHHHcCeeEEee
Confidence 9999999999999 9999999999999999999999999999 999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccc
Q 011677 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDY 475 (479)
Q Consensus 418 h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~ 475 (479)
||||||+|+++||||||++++|||+|+|+|+||++||||||||||+|+++++|+++.|
T Consensus 233 hRSGETeD~~iaDLAVg~~a~~iK~G~~~r~ER~aKyNrLLrIee~L~~~~~~~~~~~ 290 (291)
T d2ptza1 233 HRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFPGW 290 (291)
T ss_dssp CCSBCCSCCHHHHHHHHHTCSEEECCSSCSHHHHHHHHHHHHHHHHHCTTCEESCGGG
T ss_pred CCCCCcCcchHHHHHHHhCCCceecCCCcchHHHHHHHHHHHHHHHhccccCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999887
|
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=2e-74 Score=564.81 Aligned_cols=284 Identities=38% Similarity=0.654 Sum_probs=262.5
Q ss_pred cccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHH
Q 011677 185 LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIRE 264 (479)
Q Consensus 185 ~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~ 264 (479)
..+|+|++|+||||+|+++++++|||||+|.++.+++|+++++.++|+++|++|+.+. ..+++||||||+|++++.++
T Consensus 3 ~~lP~P~~NiinGG~HA~~~l~~QEfmIiP~~~~sf~eal~~~~eV~~~lk~~l~~~~--~~t~vgDEGGfaP~~~~~e~ 80 (296)
T d1w6ta1 3 KVLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRG--LETAVGDEGGFAPRFEGTED 80 (296)
T ss_dssp CEECEECEEEEECGGGCSSSCCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTT--CCCCBCTTSCBCCCCSSHHH
T ss_pred CcCCcchhheecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CCCcccccccccccCcChHH
Confidence 4799999999999999999999999999999999999999999999999999998763 35789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC-ce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCC
Q 011677 265 GLDLVKEAINRTGIPSS-KW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFD 339 (479)
Q Consensus 265 ~l~~v~~ai~~~g~~~~-~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~ 339 (479)
+|+++.+||+.+|++|+ +| +||||| ||+.+++.|++. +...+++..+|++||+++|.+|+++|||.+|||||+
T Consensus 81 aL~ll~eAI~~aGy~~G~di~ialD~AAsefy~~~~~~Y~~~--~~e~~~~~~~s~~elid~y~~l~~~YPIisIEDP~~ 158 (296)
T d1w6ta1 81 GVETILAAIEAAGYVPGKDVFLGFDCASSEFYDKERKVYDYT--KFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMD 158 (296)
T ss_dssp HHHHHHHHHHHTTCCBTTTBEEEEECCGGGGBC--CCCEETH--HHHCTTCCEECHHHHHHHHHHHHHHSCEEEEESCSC
T ss_pred HHHHHHHHHHHcCCCCCCceeeehhhhhhhhhcCCCceeeec--cccCCcccccCHHHHHHHHHHHHhcCCeEEEecCcc
Confidence 99999999999999985 45 999999 997666666542 100112346799999999999999999999999999
Q ss_pred ccCHHHHHHHHhhh---hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEE
Q 011677 340 KEDWEHTKSVLQIC---QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 340 ~~D~~g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
++||++|++|++++ |+|+|||+++||+++++++++.++||++ .||+||+||+||+++++++|+++|+.+|+
T Consensus 159 e~D~~gw~~lt~~lg~~~~iVGDDL~vTn~~~l~~gI~~~~~nai------liK~NQiGTvtet~e~~~~a~~~g~~~iv 232 (296)
T d1w6ta1 159 ENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSI------LIKVNQIGTLTETFEAIEMAKEAGYTAVV 232 (296)
T ss_dssp TTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEE------EECHHHHCSHHHHHHHHHHHHHTTCEEEE
T ss_pred cccHHHHHHHHHHhCCceEEEcCcccccChhHHHhhhhhcccccc------eeccchhHHHHHHHHHHHHHHHCCceEEe
Confidence 99999999999998 9999999999999999999999999999 99999999999999999999999999999
Q ss_pred ecCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCc-cccCC
Q 011677 417 SHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGE-DYRQC 478 (479)
Q Consensus 417 ~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~-~~~~~ 478 (479)
|||||||+|+++||||||++++|||+|+|+|+||++||||||||||+|+++++|+|. .|++.
T Consensus 233 ShRSGETeD~~iadLAVg~~a~~iK~G~~~R~ER~aKyNrLLrIee~L~~~~~~~g~~~f~~~ 295 (296)
T d1w6ta1 233 SHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLKSFYNL 295 (296)
T ss_dssp ECCSSCCSCCHHHHHHHHTTCCEEECCCSSSHHHHHHHHHHHHHHHHHGGGCEECGGGGCTTC
T ss_pred ecCCCCCccchhHHHHHHcCCCeeecCCCcchhHHHHHHHHHHHHHHhcccceeCchHhhccC
Confidence 999999999999999999999999999999999999999999999999999999994 58874
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-73 Score=557.10 Aligned_cols=279 Identities=42% Similarity=0.688 Sum_probs=262.8
Q ss_pred CcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchH
Q 011677 184 NLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIR 263 (479)
Q Consensus 184 ~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~ 263 (479)
+..+|+|++|+||||+|+++++++|||||+|.++.+++++++++.++|+++|++|+.|. ..+++||+|||+|++++.+
T Consensus 3 ~~~lP~P~~NIinGG~HA~~~l~~QEfmIiP~ga~sf~eal~~~~evy~~lk~iL~~k~--~~t~vgDEGGfap~~~~~e 80 (292)
T d2fyma1 3 KYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKG--MNTAVGDEGGYAPNLGSNA 80 (292)
T ss_dssp CCCCCEECEEEEECGGGSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTT--CCCCBCTTSCBCCCCSSHH
T ss_pred CcCCCcceeeeecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCCcccCccceecccCccH
Confidence 46899999999999999999999999999999999999999999999999999999884 3578999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-ce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCC
Q 011677 264 EGLDLVKEAINRTGIPSS-KW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338 (479)
Q Consensus 264 ~~l~~v~~ai~~~g~~~~-~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~ 338 (479)
++|++|.+|++.+|++|+ +| +||||| ||+ +++|.+.+++ ++.+|++||+++|.+|+++|||.+|||||
T Consensus 81 eaL~ll~eAi~~aGy~~G~di~ialD~AAsefy~--~~~y~~~~~~-----~~~~t~~eli~~y~~l~~~yPIisIEDP~ 153 (292)
T d2fyma1 81 EALAVIAEAVKAAGYELGKDITLAMDCAASEFYK--DGKYVLAGEG-----NKAFTSEEFTHFLEELTKQYPIVSIEDGL 153 (292)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEECCGGGGEE--TTEEEEGGGT-----TEEECHHHHHHHHHHHHHHSCEEEEESCS
T ss_pred HHHHHHHHHHHHcCCCCCceEEEeeeechhhhhc--cccceeccCC-----CccccHHHHHHHHHHHHhcCceEEEeCCc
Confidence 999999999999999986 45 999999 995 5666665432 24679999999999999999999999999
Q ss_pred CccCHHHHHHHHhhh---hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEE
Q 011677 339 DKEDWEHTKSVLQIC---QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVV 415 (479)
Q Consensus 339 ~~~D~~g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~ 415 (479)
+++||++|++|++++ |+|+|||+++||+++++++++.++||.+ .||+||+||+||+++++++|+++|+.+|
T Consensus 154 ~edD~~gw~~lt~~~g~~~~ivGDDL~~Tn~~rl~~gi~~~~~nai------liK~NQiGTvTet~ea~~la~~~g~~~i 227 (292)
T d2fyma1 154 DESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSI------LIKFNQIGSLTETLAAIKMAKDAGYTAV 227 (292)
T ss_dssp CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEE------EECGGGTCSHHHHHHHHHHHHHTTCEEE
T ss_pred ccccHHHHHHHHHhcCCcEEEeCCchhccChHHHHhhhhcCCccce------eechhhhhHHHHHHHHHHHHHHcCCeEe
Confidence 999999999999998 9999999999999999999999999999 9999999999999999999999999999
Q ss_pred EecCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccC
Q 011677 416 ISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477 (479)
Q Consensus 416 v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~ 477 (479)
+||+||||+|+|+||||||++++|||+|+|+|+||++||||||||||+|+++++|+|+.+.+
T Consensus 228 vShRSGETeD~~iaDLAVg~ga~~iK~G~~~R~ER~aKyNrLLrIee~L~~~a~~~g~~~~~ 289 (292)
T d2fyma1 228 ISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIK 289 (292)
T ss_dssp EECCSSCCSCCHHHHHHHHTTCEEEECCCSCSHHHHHHHHHHHHHHHHHGGGSCCCGGGGST
T ss_pred ecCCCCCcccchHHHHHHHhCCCeeecCCCcccchhHHHHHHHHHHHHhccccccCChHHhc
Confidence 99999999999999999999999999999999999999999999999999999999976643
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=6.7e-37 Score=264.80 Aligned_cols=135 Identities=53% Similarity=0.778 Sum_probs=129.6
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV 122 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li 122 (479)
|++|++|++|+|+||||+|||+|+|+|++|.+ ++.+|||+|||.+||.++||+++.+|.|+++.+|+++|++.|+|.|+
T Consensus 1 M~~I~~v~~r~IlDSRG~PTvevev~~~~g~~gra~~PSGAStG~~Ea~elrD~~~~~~~Gkgv~~Av~~in~~i~~~L~ 80 (137)
T d1w6ta2 1 MSIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDNVNNIIAEAII 80 (137)
T ss_dssp TTBEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHT
T ss_pred CCceeEEEEEEEEcCCCCEEEEEEEEECCCccceeecCcCCCcccccceeccCCccccccCCcHHHHHHHHHHHhHHHHc
Confidence 67899999999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 123 GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 123 G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
|+|+.||++||+.|.++|+|++++++|+||+.|||+|+|+++|+..++|||+||||
T Consensus 81 G~d~~dq~~iD~~lielDgT~nks~lGaNailAvSlA~akAaA~~~~~pLy~yigg 136 (137)
T d1w6ta2 81 GYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGG 136 (137)
T ss_dssp TSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred CCccccHHHHHHHHHHhcCcccccccchhHHHHHHHHHHHHHHHHcCCcHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999998
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=100.00 E-value=4.9e-37 Score=294.94 Aligned_cols=226 Identities=17% Similarity=0.184 Sum_probs=179.7
Q ss_pred cccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHH
Q 011677 185 LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIRE 264 (479)
Q Consensus 185 ~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~ 264 (479)
...|||+| |.|+++....+|+||++ +...+.++ +|+++| . ++|++|+ +..+
T Consensus 3 ~~~~VP~~-----g~~g~~~~~~~e~mI~~-~a~~~~~~------~~~~lk----~-------kvG~~g~------~~~e 53 (251)
T d1kkoa1 3 VPEAIPLF-----GQSGDDRYIAVDKMILK-GVDVLPHA------LINNVE----E-------KLGFKGE------KLRE 53 (251)
T ss_dssp CCCCCCEE-----CCCTTCTTHHHHHHHHT-TCSEEEET------TCCCCC----C-------CCCTTSH------HHHH
T ss_pred CCCCcccc-----cccCCCcccchHHHHHh-hhHHHHHH------HHHHHH----H-------HhCCCCC------CcHH
Confidence 46789988 45666778889988874 33332221 133333 3 3566654 3456
Q ss_pred HHHHHHHHHHhcCCCCC---ce-eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhh---CCceeeec
Q 011677 265 GLDLVKEAINRTGIPSS---KW-SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCAD---YPIVSIED 336 (479)
Q Consensus 265 ~l~~v~~ai~~~g~~~~---~i-iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~---~~i~~iEd 336 (479)
.++.+.++++.++..++ .+ +|++.. .+ ++.|+.+++++++.++.+. |+| ||||
T Consensus 54 ~~~~~~~rI~~~r~~~G~~~~i~iD~~~~~~~------------------~~~~~~~~ai~~l~~L~~~~~~~~l-~IEq 114 (251)
T d1kkoa1 54 YVRWLSDRILSLRSSPRYHPTLHIDVYGTIGL------------------IFDMDPVRCAEYIASLEKEAQGLPL-YIEG 114 (251)
T ss_dssp HHHHHHHHHHHHCSSTTCCCEEEEECTTHHHH------------------HTTTCHHHHHHHHHHTGGGGTTSCE-EEEC
T ss_pred HHHHHHHHHHHHHhCcCCCcceeecccccccc------------------ccCCCHHHHHHHHHHHHHhcCCCce-eecC
Confidence 67767677766554443 34 898543 11 1467999999998876543 565 9999
Q ss_pred CCC----ccCHHHHHHHHhhh------hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHH
Q 011677 337 PFD----KEDWEHTKSVLQIC------QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKL 406 (479)
Q Consensus 337 P~~----~~D~~g~~~L~~~~------~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~ 406 (479)
|++ ++|+++|++|++++ +||++||++.| +++++++++.+++|++ +||++|+||||++++++++
T Consensus 115 P~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~~~t-~~d~~~~i~~~a~d~v------~iK~~k~GGi~~a~~~~~~ 187 (251)
T d1kkoa1 115 PVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNT-YQDIVDFTDAGSCHMV------QIKTPDLGGIHNIVDAVLY 187 (251)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCS-HHHHHHHHHTTCCSEE------EECGGGGSSTHHHHHHHHH
T ss_pred CcccccchHHHHHHHHHHHHHhccCCCceEeccceeCC-HHHHHHHHHhCCccce------eccccccCCHHHHHHHHHH
Confidence 996 57899999999874 89999998655 8999999999999999 9999999999999999999
Q ss_pred HhhCCCeEEEecCCCCCchhH--HHHhHhhcCCCCc--ccCCCCchhHHHHhHHHHHHHHHhC
Q 011677 407 ANDVPWGVVISHRSGETEDSF--IADLSVGLASGQI--KAGAPCRGERLAKYNQLLHIEEELG 465 (479)
Q Consensus 407 A~~~g~~~~v~h~~get~d~~--~~dlAv~~~~~~i--k~G~~~~~er~~kyn~ll~ie~~l~ 465 (479)
|+++|+++|+||+++||+++. ++|||+|++++|+ |+|...+++|++|||+++||+++|.
T Consensus 188 A~~~Gi~~~~g~~~~ET~~~~~a~~hla~a~~~~~~~~kpg~g~d~~~~~~~ne~~r~~~~~~ 250 (251)
T d1kkoa1 188 CNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALLQ 250 (251)
T ss_dssp HHHHTCEEEECCCTTSCHHHHHHHHHHHHHHCCSEEECCSCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCeEEEeCcccCcchHHHHHHHHHHhcCCcccccCCCCCCCcchHHHHHHHHHHHHHhc
Confidence 999999999999999999974 7899999999999 9999999999999999999999873
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=7.6e-36 Score=259.93 Aligned_cols=136 Identities=55% Similarity=0.844 Sum_probs=133.0
Q ss_pred ceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC
Q 011677 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM 124 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~ 124 (479)
|+|++|++|+|+||||+|||+|+|+|++|++++++|||+|||.+||.++||+++.+|.|+++.+++..|++.|+|.|+|+
T Consensus 2 M~I~~i~~r~IlDSRG~PTvevev~~~~g~~ra~~PsGaStG~~Ea~elrd~~~~~~~Gkgv~~Av~nin~~I~~~L~g~ 81 (139)
T d2ptza2 2 MTIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVKNVNEVIGPALIGR 81 (139)
T ss_dssp TSCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHHHHHHHTHHHHHTTC
T ss_pred CeEEEEEEEEEEcCCCCeEEEEEEEECCCceeEeccccccccchhhhhcCCCcccccccchHHHHHHHhhhccchhhccc
Confidence 68999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhccc
Q 011677 125 DPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180 (479)
Q Consensus 125 d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~ 180 (479)
++.||++||+.|.++|+|.+++++|+||+.|||+|+|++.|+..++|||+||+++.
T Consensus 82 ~~~dQ~~iD~~li~lDgt~nks~lGaNailAvS~A~akA~A~~~~~pLy~yi~~~~ 137 (139)
T d2ptza2 82 DELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLA 137 (139)
T ss_dssp CTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhCCcchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999854
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=100.00 E-value=1.4e-34 Score=278.36 Aligned_cols=186 Identities=15% Similarity=0.189 Sum_probs=161.2
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCCCC-c--e-eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHh--
Q 011677 255 LAPNISSIREGLDLVKEAINRTGIPSS-K--W-SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCA-- 327 (479)
Q Consensus 255 ~~~~~~~~~~~l~~v~~ai~~~g~~~~-~--i-iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~-- 327 (479)
+.++.+++.+.++.+.++++++++.++ + + +|++.. .. ++.||++|+++++.++.+
T Consensus 44 ~G~~~~~~~e~~~~i~~rI~~~r~~~g~~~~l~iD~~~~~~~------------------n~~~~~~eai~~~~~L~~~~ 105 (253)
T d1kcza1 44 LGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGA------------------AFDVDIKAMADYIQTLAEAA 105 (253)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHH------------------HTTTCHHHHHHHHHHHHHHH
T ss_pred cCCCccccHHHHHHHHHHHHHHhcccccCceeeehhhhccCc------------------cCCCCHHHHHHHHHHHHHhc
Confidence 345556778889999999988777653 3 4 998553 22 257899999998877544
Q ss_pred -hCCceeeecCCCccC----HHHHHHHHhhh------hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcccccc
Q 011677 328 -DYPIVSIEDPFDKED----WEHTKSVLQIC------QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGT 396 (479)
Q Consensus 328 -~~~i~~iEdP~~~~D----~~g~~~L~~~~------~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Gg 396 (479)
+|++ |||||++++| +++|++|++++ +||++||+ ++++++++++++.+++|++ +||++|+||
T Consensus 106 ~~y~i-~iEqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~-~~~~~d~~~~i~~~a~d~v------~iK~~k~GG 177 (253)
T d1kcza1 106 KPFHL-RIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEW-CNTVEDVKFFTDNKAGHMV------QIKTPDLGG 177 (253)
T ss_dssp TTSCE-EEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTT-CCSHHHHHHHHHTTCSSEE------EECTGGGSS
T ss_pred CCCCc-eEecCCCCccHhhHHHHHHHHHHHHhccCCccceecccc-ccCHHHHHHHHHhCCcCee------eccccccCC
Confidence 3777 9999999998 56788888874 89999996 5679999999999999999 999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHHHhHhhcCCCCc--ccCCCCchhHHHHhHHHHHHHHHhCC
Q 011677 397 VTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVGLASGQI--KAGAPCRGERLAKYNQLLHIEEELGD 466 (479)
Q Consensus 397 itea~~i~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~~~~~~i--k~G~~~~~er~~kyn~ll~ie~~l~~ 466 (479)
||++++++++|+++|+++|+||+++||+++ +++|||+|++++|+ |+|.+++++|++|||+|+||++.|+.
T Consensus 178 i~~al~~~~~a~~~Gi~~~vg~~~~Et~~s~~a~~hla~A~~~~~~~~kpg~~~~~~~~~~~n~~~r~~~~~~~ 251 (253)
T d1kcza1 178 VNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLALVGR 251 (253)
T ss_dssp THHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHTCSEEECCSSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcEEEcCccCCcchHHHHHHHHHHhcCcchhhcCCCCCcccchhHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999997 47999999999999 99999999999999999999999875
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-34 Score=252.39 Aligned_cols=135 Identities=54% Similarity=0.792 Sum_probs=131.8
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM 124 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~ 124 (479)
+|++|++|+|+||||+|||+|+|+|++|.+ ++++|||+|||.+||.++||+++.+|.|+++..++..+++.|+|.|+|+
T Consensus 2 kI~~v~~r~IlDSRG~PTvevev~~~~g~~g~a~~PsGaStG~~Ea~elrD~~~~~~~Gkgv~~av~~in~~i~~~Lig~ 81 (139)
T d2fyma2 2 KIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGK 81 (139)
T ss_dssp BEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHTTS
T ss_pred eeEEEEEEEEEcCCCCeEEEEEEEECCCCEeEEECCcccCccccccccccCCChhhhcccccchhhHHHHHHHHHHHhCC
Confidence 799999999999999999999999999987 9999999999999999999999899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhccc
Q 011677 125 DPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180 (479)
Q Consensus 125 d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~ 180 (479)
++.||++||+.|.++|+|+|++++|+|++.|+|+|+++++|+..++|||+||++..
T Consensus 82 ~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~~~ 137 (139)
T d2fyma2 82 DAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELN 137 (139)
T ss_dssp BTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred chhhhHHHHHHHHhccCCccccccchHHHHHHHHHHHHHHHHHcCCCHHHHhHhhc
Confidence 99999999999999999999999999999999999999999999999999999853
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Probab=100.00 E-value=2.8e-34 Score=248.63 Aligned_cols=134 Identities=60% Similarity=0.897 Sum_probs=130.4
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc--C
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV--G 123 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li--G 123 (479)
+|++|.+|+|+||||+|||+|+|+|++|+.++++|||+|||.+||.++||+++.+|.|+++..+++.|++.+.|.|+ |
T Consensus 1 tI~~i~ar~IlDSRG~PTVev~v~~~~~~~ra~~PSGAStG~~EA~elrD~~~~~~~Gkgv~~Av~nin~~i~~~Li~~g 80 (139)
T d1pdza2 1 SITKVFARTIFDSRGNPTVEVDLYTSKGLFRAAVPSGASTGVHEALEMRDGDKSKYHGKSVFNAVKNVNDVIVPEIIKSG 80 (139)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHT
T ss_pred CccEEEEEEEEcCCCCcEEEEEEEECCCeEEEecccCcCCcchhheecccCCccccccccccceeecchhhhhHHHHhcC
Confidence 59999999999999999999999999998899999999999999999999998999999999999999999999998 6
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcc
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL 179 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~ 179 (479)
+++.+|++||+.|.++|+|+|++++|+|++.|||+|+|+++|+..++|||+||+++
T Consensus 81 ~~~~dq~~iD~~Li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~~ 136 (139)
T d1pdza2 81 LKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICKAGAAELGIPLYRHIANL 136 (139)
T ss_dssp CCTTCHHHHHHHHHHHHCSSSSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccccchhhhHHHHHhhcCccchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999974
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-34 Score=251.05 Aligned_cols=135 Identities=56% Similarity=0.838 Sum_probs=131.2
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc--C
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV--G 123 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li--G 123 (479)
.|++|++|+|+||||+|||+|+|+|++|+.++++|||+|||.+||.++||+++.+|.|+++..+++.+++.|.|.|+ |
T Consensus 1 ~I~~v~ar~IlDSRG~PTvev~v~~~~g~~ra~~PSGaStG~~EA~elrD~~~~~~~gkgV~~av~nin~~i~~~Li~~g 80 (141)
T d2al1a2 1 AVSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKAN 80 (141)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHT
T ss_pred CcCEEEEEEEECCCCCcEEEEEEEECCCeEEEeeccCCCCCcceeeeecCCCccccccccchhHHHHHHHHhHHHHhhcC
Confidence 38999999999999999999999999998899999999999999999999999999999999999999999999999 8
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhccc
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~ 180 (479)
+++.||++||+.|.++|+|.|++++|+|++.|||+|+|+++|+..++|||+||++..
T Consensus 81 ~~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yl~~~~ 137 (141)
T d2al1a2 81 IDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLS 137 (141)
T ss_dssp CCTTCHHHHHHHHHHHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHccCCcchhhhhhHHHHHHHHHHHHHHHHHcCCCHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999854
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=100.00 E-value=4.7e-34 Score=248.80 Aligned_cols=135 Identities=63% Similarity=0.989 Sum_probs=131.5
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc--C
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV--G 123 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li--G 123 (479)
+|++|.+|+|+||||+|||+|+|+|++|++++++|||+|||.+||.++||+++.+|.|+++..+++.+++.|.|.|+ |
T Consensus 1 tI~~i~~r~IlDSRG~PTvevev~~~~g~~~a~~PsGaStG~~Ea~elrd~~~~~~~gkgV~~Av~~i~~~i~~~Li~~g 80 (139)
T d2akza2 1 SIEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSG 80 (139)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHC
T ss_pred CcCEEEEEEEEcCCCCeEEEEEEEECCCeEEEecccccccchhhhhhccccccccccCCchhhHHHhhHHHHHHHHHhcC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhccc
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLA 180 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~ 180 (479)
+++.+|++||+.|.++|+|.+++++|+||+.|||+|+|++.|+..++|||+||+++.
T Consensus 81 ~~~~dQ~~iD~~L~~lDgt~nks~lGaNailAvSlA~akA~A~~~~~pLy~yi~~l~ 137 (139)
T d2akza2 81 LSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLA 137 (139)
T ss_dssp CCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHccCccchhhcChHHHHHHHHHHHHHHHHHcCCcHHHHhHhhh
Confidence 999999999999999999999999999999999999999999999999999999854
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.88 E-value=6.1e-23 Score=196.53 Aligned_cols=121 Identities=11% Similarity=0.026 Sum_probs=102.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCc
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNL 389 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~i 389 (479)
+.||.++++++.. .++++++.|||||++++|++++++|++++ +||++||.. +++++++++++.+++|++ ++
T Consensus 71 ~~~~~~~A~~~~~-~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~-~~~~~~~~~i~~~~~d~v------~~ 142 (244)
T d2chra1 71 QAWDEQVASVYIP-ELEALGVELIEQPVGRENTQALRRLSDNNRVAIMADESL-STLASAFDLARDRSVDVF------SL 142 (244)
T ss_dssp TCCCTHHHHHHHH-HHHTTTCCEEECCSCSSCHHHHHHHHHHCSSEEEESSSC-CSHHHHHHHHTTTCCSEE------CC
T ss_pred CCcchHHHHHHHH-HHhhhhHHHHhhhhhhccchhhhhhccceeeeeeecccc-cccchhhhhhhcceeEEE------ee
Confidence 3578899998765 58999999999999999999999999999 999999976 459999999999999999 99
Q ss_pred CccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCc
Q 011677 390 WINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQI 440 (479)
Q Consensus 390 k~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~i 440 (479)
|++++||+|++++++++|+++|++++++| ..++..+..+++.++...+.+
T Consensus 143 d~~~~GGit~~~~i~~~a~~~gi~~~~~~-~~~~~i~~~a~~hl~a~~~~~ 192 (244)
T d2chra1 143 KLCNMGGVSATQKIAAVAEASGIASYGGT-MLDSTIGTSVALQLYSTVPSL 192 (244)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTCEECCCC-CSCCHHHHHHHHHHHTTSSCC
T ss_pred ccccccchHHHHHHHHHHHHcCCCeeecc-ccccccchhHHHHHHHhCCCC
Confidence 99999999999999999999999986655 456655555555444444333
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=5.7e-23 Score=196.41 Aligned_cols=141 Identities=15% Similarity=0.101 Sum_probs=115.3
Q ss_pred CchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCC
Q 011677 260 SSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338 (479)
Q Consensus 260 ~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~ 338 (479)
+.+.+.++.||+++ |.+ ..+ +|+| +.||.++++++.+ .+++++|.|||||+
T Consensus 46 ~~Di~~i~~ir~~~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~~-~l~~~~i~~iEeP~ 97 (242)
T d1muca1 46 EQDLKHVVTIKREL---GDS-ASVRVDVN-----------------------QYWDESQAIRACQ-VLGDNGIDLIEQPI 97 (242)
T ss_dssp HHHHHHHHHHHHHH---GGG-SEEEEECT-----------------------TCBCHHHHHHHHH-HHHHTTCCCEECCB
T ss_pred HHHHHHHHHHHHHh---CCC-CEEEEecC-----------------------CCCcHHHHHHHHH-HhhhhhHHHhhcch
Confidence 44556666666666 533 355 8983 3678999998865 47999999999999
Q ss_pred CccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEe
Q 011677 339 DKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 339 ~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~ 417 (479)
+++|++++++|++++ +||++||+.. +++++.++++.+++|++ ++|++++||||++++++++|+++|+++++
T Consensus 98 ~~~d~~~~~~L~~~~~~pIa~~E~~~-~~~~~~~~i~~~~~d~~------~~d~~~~GGit~~~~i~~~A~~~gi~~~~- 169 (242)
T d1muca1 98 SRINRGGQVRLNQRTPAPIMADESIE-SVEDAFSLAADGAASIF------ALKIAKNGGPRAVLRTAQIAEAAGIGLYG- 169 (242)
T ss_dssp CTTCHHHHHHHHHHCSSCEEESTTCS-SHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHHTCEEEE-
T ss_pred hhhhhhhhhhhhhhhhheeecccccc-cccchhhhhhccccccc------ccccccchhHHHHHHHHHHHHhCCCCccc-
Confidence 999999999999999 9999999865 49999999999999999 99999999999999999999999999865
Q ss_pred cCCCCCch--hHHHHhHhhcC
Q 011677 418 HRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 418 h~~get~d--~~~~dlAv~~~ 436 (479)
|...++.. .+.+|+|.++.
T Consensus 170 ~~~~~~~i~~~a~~h~~~~~~ 190 (242)
T d1muca1 170 GTMLEGSIGTLASAHAFLTLR 190 (242)
T ss_dssp CCSSCCHHHHHHHHHHHTTCS
T ss_pred ccccccccchhhhhhHHhhcc
Confidence 54456544 44556655553
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.87 E-value=1.2e-22 Score=194.20 Aligned_cols=140 Identities=11% Similarity=0.075 Sum_probs=114.5
Q ss_pred chHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCC
Q 011677 261 SIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFD 339 (479)
Q Consensus 261 ~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~ 339 (479)
.+.++++.+|+++ |.+ ..+ +|+| +.||.++++++.. .++++++.|||||++
T Consensus 47 ~Di~~v~~ir~~~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~~-~l~~~~~~~iEeP~~ 98 (243)
T d1nu5a1 47 QDLEHIRSIVKAV---GDR-ASVRVDVN-----------------------QGWDEQTASIWIP-RLEEAGVELVEQPVP 98 (243)
T ss_dssp HHHHHHHHHHHHH---GGG-CEEEEECT-----------------------TCCCHHHHHHHHH-HHHHHTCCEEECCSC
T ss_pred HHHHHHHHHHHHh---Ccc-cceEEECC-----------------------CCccchhHHHHHH-Hhcchhhhhhhhhhh
Confidence 3455566666555 543 345 8883 3678999998764 579999999999999
Q ss_pred ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEec
Q 011677 340 KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISH 418 (479)
Q Consensus 340 ~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h 418 (479)
++|++++++|++++ +||++||.. .++++++.+++.+++|++ ++|++++||+|++++++++|+++|++++++|
T Consensus 99 ~~~~~~~~~l~~~~~ipIa~gE~~-~~~~~~~~~i~~~~~d~~------~~d~~~~GGit~~~~i~~~a~~~gi~~~~~~ 171 (243)
T d1nu5a1 99 RANFGALRRLTEQNGVAILADESL-SSLSSAFELARDHAVDAF------SLKLCNMGGIANTLKVAAVAEAAGISSYGGT 171 (243)
T ss_dssp TTCHHHHHHHHHHCSSEEEESTTC-CSHHHHHHHHHTTCCSEE------EECHHHHTSHHHHHHHHHHHHHHTCEEEECC
T ss_pred hccccccccchhcccccccccccc-ccchhhhhcccccccccc------ccccccccchHHHHHHHHHHHHcCCCccccc
Confidence 99999999999999 999999975 459999999999999999 9999999999999999999999999987766
Q ss_pred CCCCCchh--HHHHhHhhcC
Q 011677 419 RSGETEDS--FIADLSVGLA 436 (479)
Q Consensus 419 ~~get~d~--~~~dlAv~~~ 436 (479)
.. ++..+ +.+|++.++.
T Consensus 172 ~~-~s~i~~~a~~h~~aa~p 190 (243)
T d1nu5a1 172 ML-DSTVGTAAALHVYATLP 190 (243)
T ss_dssp SS-CCHHHHHHHHHHHTTSS
T ss_pred cc-chhhhHHHHHHHHHhCC
Confidence 54 55454 4555555543
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.86 E-value=5.4e-22 Score=190.88 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=114.7
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeec
Q 011677 258 NISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIED 336 (479)
Q Consensus 258 ~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEd 336 (479)
+++.+.++++.||+++ |.+ .+| +|+| +.||.++++++. +.++++++.||||
T Consensus 56 ~~~~d~~~v~avR~~~---G~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~l~~iEe 107 (255)
T d1rvka1 56 DVKMDLKACAAVREAV---GPD-IRLMIDAF-----------------------HWYSRTDALALG-RGLEKLGFDWIEE 107 (255)
T ss_dssp CHHHHHHHHHHHHHHH---CTT-SEEEEECC-----------------------TTCCHHHHHHHH-HHHHTTTCSEEEC
T ss_pred CHHHHHHHHHHHHHHc---CCc-cceecccc-----------------------cccccchhhhhh-hhcccchhhhhcC
Confidence 3444555555555555 755 566 9984 367899999875 4589999999999
Q ss_pred CCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEE
Q 011677 337 PFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVV 415 (479)
Q Consensus 337 P~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~ 415 (479)
|++++|++++++|++++ +||++||...+..+.++++++.+++|++ ++|++++||||++++++++|+++|++++
T Consensus 108 P~~~~d~~~~~~l~~~~~~pI~~~E~~~~~~~~~~~~i~~~~~dii------~~d~~~~GGit~~~~i~~~a~~~gi~v~ 181 (255)
T d1rvka1 108 PMDEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDIL------RTGVNDVGGITPALKTMHLAEAFGMECE 181 (255)
T ss_dssp CSCTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCCEE
T ss_pred CcccccHHHHHHHHHhcccceeehhhcccchhhhhhhhhhchhhhc------cccccccccchHHHHHHHHHHHhcccee
Confidence 99999999999999999 9999999876634577889999999999 9999999999999999999999999974
Q ss_pred EecCCCCCchhHHHHhHhhcCC
Q 011677 416 ISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 416 v~h~~get~d~~~~dlAv~~~~ 437 (479)
.|.+. ...+|++.++..
T Consensus 182 -~h~~~----~~~~hl~a~~~~ 198 (255)
T d1rvka1 182 -VHGNT----AMNLHVVAATKN 198 (255)
T ss_dssp -ECCCS----HHHHHHHHHCSS
T ss_pred -ccccc----hhHHHHHHHhhh
Confidence 46543 345777777643
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.86 E-value=5.3e-22 Score=191.20 Aligned_cols=141 Identities=9% Similarity=0.067 Sum_probs=114.2
Q ss_pred CchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhC-CceeeecC
Q 011677 260 SSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADY-PIVSIEDP 337 (479)
Q Consensus 260 ~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~-~i~~iEdP 337 (479)
+.+.++++.||+++ |.+ ..| +|+| +.||.++++++.. .++++ +|.|||||
T Consensus 50 ~~di~~v~avr~~~---G~~-~~l~vDan-----------------------~~~~~~~A~~~~~-~l~~~~~i~~~EeP 101 (256)
T d2gdqa1 50 KEDVRHINALQHTA---GSS-ITMILDAN-----------------------QSYDAAAAFKWER-YFSEWTNIGWLEEP 101 (256)
T ss_dssp HHHHHHHHHHHHHH---CTT-SEEEEECT-----------------------TCCCHHHHHTTHH-HHTTCSCEEEEECC
T ss_pred HHHHHHHHHHHHHc---CCC-eEEeeccc-----------------------cCCCHHHHHHHHH-HHhhcCceeEeccc
Confidence 34455555555555 755 456 9984 3678899998754 57886 69999999
Q ss_pred CCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEE
Q 011677 338 FDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 338 ~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
++++|+.++++|++++ +||++||... ++++++++++.+++|++ ++|++++||||++++++++|+++|++| +
T Consensus 102 ~~~~d~~~~~~l~~~~~ipIa~gE~~~-~~~~~~~~i~~~a~di~------~~d~~~~GGit~~~~i~~~a~~~~i~v-~ 173 (256)
T d2gdqa1 102 LPFDQPQDYAMLRSRLSVPVAGGENMK-GPAQYVPLLSQRCLDII------QPDVMHVNGIDEFRDCLQLARYFGVRA-S 173 (256)
T ss_dssp SCSSCHHHHHHHHTTCSSCEEECTTCC-SHHHHHHHHHTTCCSEE------CCCTTTTTHHHHHHHHHHHHHHHTCEE-C
T ss_pred cccchHHHHHHHhhcccceeecCcccc-chhhHHHHHHhhcceee------eccccccccHHHHHHHHHHHhhhcccc-c
Confidence 9999999999999999 9999999764 59999999999999999 999999999999999999999999996 6
Q ss_pred ecCCCCC-chhHHHHhHhhcC
Q 011677 417 SHRSGET-EDSFIADLSVGLA 436 (479)
Q Consensus 417 ~h~~get-~d~~~~dlAv~~~ 436 (479)
+|..+.. ...+.+|++.++.
T Consensus 174 ~h~~~~~i~~~a~~~~~~~~~ 194 (256)
T d2gdqa1 174 AHAYDGSLSRLYALFAQACLP 194 (256)
T ss_dssp CCCSSCSHHHHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHHhCc
Confidence 6865432 3345566666654
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.84 E-value=1.4e-21 Score=187.70 Aligned_cols=139 Identities=18% Similarity=0.167 Sum_probs=114.0
Q ss_pred CchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCC
Q 011677 260 SSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338 (479)
Q Consensus 260 ~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~ 338 (479)
+.+.++++.||+++ |.+ .+| +|+| +.||.++++++.. .++++++.|||||+
T Consensus 43 ~~di~~v~~vr~~~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~~-~l~~~~~~~iEeP~ 94 (252)
T d1yeya1 43 QDDIRRCRLARAAI---GPD-IAMAVDAN-----------------------QRWDVGPAIDWMR-QLAEFDIAWIEEPT 94 (252)
T ss_dssp HHHHHHHHHHHHHH---CSS-SEEEEECT-----------------------TCCCHHHHHHHHH-TTGGGCCSCEECCS
T ss_pred HHHHHHHHHHHHHh---CCC-ceEeeccc-----------------------cCcchHHHHHHHH-hhhhcCceeecCCc
Confidence 34455555555555 755 466 9984 4678999998764 57999999999999
Q ss_pred CccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEE
Q 011677 339 DKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 339 ~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
+++|++++++++++. +||++||.. +++++++++++.+++|++ ++|++++||||++++++++|+++|+++ +
T Consensus 95 ~~~d~~~~~~~~~~~~~ipia~gE~~-~~~~~~~~~i~~~a~d~~------~~d~~~~GGit~~~kia~~A~~~~i~v-~ 166 (252)
T d1yeya1 95 SPDDVLGHAAIRQGITPVPVSTGEHT-QNRVVFKQLLQAGAVDLI------QIDAARVGGVNENLAILLLAAKFGVRV-F 166 (252)
T ss_dssp CTTCHHHHHHHHHHSTTSCEECCTTC-CSHHHHHHHHHHTCCSEE------CCCTTTSSHHHHHHHHHHHHHHHTCEE-C
T ss_pred chhhHHHHHHHhhccCCCceeccccc-cchhhhhhHhhcccccee------ccccccccCchhhhHHHHHHHHcCCEE-e
Confidence 999999999988874 999999986 459999999999999999 999999999999999999999999996 6
Q ss_pred ecCCCCCchhHHHHhHhh
Q 011677 417 SHRSGETEDSFIADLSVG 434 (479)
Q Consensus 417 ~h~~get~d~~~~dlAv~ 434 (479)
.|..++...+.+++++.+
T Consensus 167 ~h~~~~~~~~~~~~~~~~ 184 (252)
T d1yeya1 167 PHAGGVGLCELVQHLAMA 184 (252)
T ss_dssp CCCCTTTHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHH
Confidence 687666555555555543
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.84 E-value=3.9e-21 Score=183.40 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=113.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCC
Q 011677 261 SIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFD 339 (479)
Q Consensus 261 ~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~ 339 (479)
.+.+.++.+|+++ |.+ .++ +|+| +.||.++++++ .+ ++++++.|||||++
T Consensus 43 ~Di~~i~~ir~~~---g~~-~~l~vDaN-----------------------~~~~~~~a~~~-~~-l~~~~~~~iEeP~~ 93 (242)
T d1sjda1 43 WDVEPVRAVRERF---GDD-VLLQVDAN-----------------------TAYTLGDAPQL-AR-LDPFGLLLIEQPLE 93 (242)
T ss_dssp BSHHHHHHHHHHH---CTT-SEEEEECT-----------------------TCCCGGGHHHH-HT-TGGGCCSEEECCSC
T ss_pred hHHHHHHHHHHHh---CCC-eeEeeccc-----------------------cccchhhhhHH-hh-hhhhhhHHHHhhhh
Confidence 4577888888877 644 456 9984 35577788865 56 68999999999999
Q ss_pred ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEec
Q 011677 340 KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISH 418 (479)
Q Consensus 340 ~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h 418 (479)
++|++++++|++++ +||++||... ++++++++++.+++|++ ++|++++||+|++++++++|+++|+++++ |
T Consensus 94 ~~d~~~~~~l~~~~~~pia~gE~~~-~~~~~~~~~~~~~~d~~------~~d~~~~GGit~~~~i~~~A~~~~i~~~~-h 165 (242)
T d1sjda1 94 EEDVLGHAELARRIQTPICLDESIV-SARAAADAIKLGAVQIV------NIKPGRVGGYLEARRVHDVCAAHGIPVWC-G 165 (242)
T ss_dssp TTCHHHHHHHHTTCSSCEEESTTCC-SHHHHHHHHHTTCCSEE------EECTTTTTSHHHHHHHHHHHHHTTCCEEE-C
T ss_pred hhhHHHHHHHHhccCcccccccccc-cchhhhhhhhcCccCEE------EeccccCccchhhhHHHHHHHHCCCEEee-c
Confidence 99999999999999 9999999765 59999999999999999 99999999999999999999999999855 5
Q ss_pred CCCCCchhHHHHhHhhc
Q 011677 419 RSGETEDSFIADLSVGL 435 (479)
Q Consensus 419 ~~get~d~~~~dlAv~~ 435 (479)
+..++..+..+.+.++.
T Consensus 166 ~~~~~~i~~~a~~~~a~ 182 (242)
T d1sjda1 166 GMIETGLGRAANVALAS 182 (242)
T ss_dssp CCCCCHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHhh
Confidence 55566554444444343
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=2.2e-21 Score=184.19 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=114.2
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhh--CCceeee
Q 011677 259 ISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCAD--YPIVSIE 335 (479)
Q Consensus 259 ~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~--~~i~~iE 335 (479)
++.+.++++.+|+++ |.+ .+| +|+| +.||.++++++.+. +++ +++.|||
T Consensus 43 ~~~d~~~i~~ir~~~---g~~-~~i~vD~N-----------------------~~~~~~~a~~~~~~-le~~~~~i~~~E 94 (234)
T d1jpma1 43 IATDIARIQEIRKRV---GSA-VKLRLDAN-----------------------QGWRPKEAVTAIRK-MEDAGLGIELVE 94 (234)
T ss_dssp HHHHHHHHHHHHHHH---GGG-SEEEEECT-----------------------TCSCHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHc---Cch-hhhhhhcc-----------------------cccchHHHHHHHHH-HHhccCceeeec
Confidence 344556666666665 544 456 8884 35788999987654 666 5689999
Q ss_pred cCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeE
Q 011677 336 DPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGV 414 (479)
Q Consensus 336 dP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~ 414 (479)
||++++|+++|++|++++ +||+.||.. ++++++.++++.+++|++ ++|++++||+|++++++++|+++|+++
T Consensus 95 eP~~~~d~~~~~~l~~~~~~pia~gE~~-~~~~~~~~~i~~~~~d~v------~~d~~~~GGit~~~~i~~~a~~~g~~~ 167 (234)
T d1jpma1 95 QPVHKDDLAGLKKVTDATDTPIMADESV-FTPRQAFEVLQTRSADLI------NIKLMKAGGISGAEKINAMAEACGVEC 167 (234)
T ss_dssp CCSCTTCHHHHHHHHHHCSSCEEESTTC-SSHHHHHHHHHTTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCCE
T ss_pred CCccccCHHHHHHhhccccceeeccccc-ccchhhhhhhccCCcCeE------EEeeecCCCHHHHHHHHHHHHhcCeeE
Confidence 999999999999999999 999999976 559999999999999999 999999999999999999999999998
Q ss_pred EEecCCCCCch--hHHHHhHhhc
Q 011677 415 VISHRSGETED--SFIADLSVGL 435 (479)
Q Consensus 415 ~v~h~~get~d--~~~~dlAv~~ 435 (479)
+++|. .++.. .+.+|+|.++
T Consensus 168 ~~~~~-~~~~i~~~a~~~~aa~~ 189 (234)
T d1jpma1 168 MVGSM-IETKLGITAAAHFAASK 189 (234)
T ss_dssp EECCS-SCCHHHHHHHHHHHHHC
T ss_pred eeccc-ccCCchHHHHHHHHHhc
Confidence 77654 45544 4555666654
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.83 E-value=2.4e-21 Score=185.08 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
.||.++++ ++.+ +++|++.|||||++++|++++++|++++ +||++||.. +++++++++++.+++|++ ++|
T Consensus 67 ~~~~~~a~-~~~~-l~~~~~~wiEeP~~~~d~~~~~~l~~~~~~pia~dE~~-~~~~~~~~~i~~~a~d~v------~~d 137 (244)
T d1wufa1 67 AYNREDFL-LLKE-LDQYDLEMIEQPFGTKDFVDHAWLQKQLKTRICLDENI-RSVKDVEQAHSIGSCRAI------NLK 137 (244)
T ss_dssp CCCGGGHH-HHHT-TGGGTCSEEECCSCSSCSHHHHHHHTTCSSEEEECTTC-CSHHHHHHHHHHTCCSEE------EEC
T ss_pred cccchhhh-hhhc-ccccchhhhcCcccccchhhhhccccccccccccCccc-cchhhhhhhcccccccee------ecc
Confidence 45677776 5554 7999999999999999999999999999 999999975 569999999999999999 999
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
++++||+|++++++++|+++|+++++ |...++..+..+.+.++....++.+...
T Consensus 138 ~~~~GGit~~~ki~~~a~~~gi~v~~-h~~~~~~i~~~~~~~~~~~~~~~~~~~~ 191 (244)
T d1wufa1 138 LARVGGMSSALKIAEYCALNEILVWC-GGMLEAGVGRAHNIALAARNEFVFPGDI 191 (244)
T ss_dssp TGGGTSHHHHHHHHHHHHHTTCEEEE-CCCCCCHHHHHHHHHHHTSSSCCSCBSC
T ss_pred cccccchhhHHHHHHHHHHcCCEEec-CCCCCccHHHHHHHHHHhccCccchhhh
Confidence 99999999999999999999999754 6667777777787777776766654443
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.83 E-value=2.9e-21 Score=184.16 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCc
Q 011677 262 IREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDK 340 (479)
Q Consensus 262 ~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~ 340 (479)
+.+.++.+|+++. + .++ +|+| +.|+.++++. +.+ ++++++.|||||+++
T Consensus 44 D~~~v~~ir~~~~----d-~~l~vDaN-----------------------~~~~~~~a~~-~~~-~~~~~i~~iEeP~~~ 93 (241)
T d1wuea1 44 DVEPVALIRQHFP----N-LPLMVDAN-----------------------SAYTLADLPQ-LQR-LDHYQLAMIEQPFAA 93 (241)
T ss_dssp SHHHHHHHHHHCT----T-SCEEEECT-----------------------TCCCGGGHHH-HHG-GGGSCCSCEECCSCT
T ss_pred HHHHHHHHHHhcc----c-cceeeccc-----------------------ccCCHHHhhh-hhh-hhhhhhhhhcCcccc
Confidence 4677777776652 2 345 9984 2456777875 455 578999999999999
Q ss_pred cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 341 EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 341 ~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
+|++++++|++++ +||++||.. +++++++.+++.+++|++ ++|++++||+|++++++++|+++|++++++|
T Consensus 94 ~~~~~~~~l~~~~~~pIa~gE~~-~~~~~~~~~i~~~~~d~i------~~d~~~~GGit~~~~i~~~a~~~~i~v~~~~- 165 (241)
T d1wuea1 94 DDFLDHAQLQRELKTRICLDENI-RSLKDCQVALALGSCRSI------NLKIPRVGGIHEALKIAAFCQENDLLVWLGG- 165 (241)
T ss_dssp TCSHHHHHHHTTCSSCEEECTTC-CSHHHHHHHHHHTCCSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEECC-
T ss_pred cchhhhhhhhcccccccccCccc-ccchhhhhhhhhhhhhhh------ccccccccCcHHHHHHHHHHHHcCCEEEecc-
Confidence 9999999999999 999999975 569999999999999999 9999999999999999999999999986654
Q ss_pred CCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 420 SGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 420 ~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
..++..+..+.++++.......+...
T Consensus 166 ~~~~~i~~~a~~~~a~~~~~~~~~~~ 191 (241)
T d1wuea1 166 MFESGVGRALNLQFASQPTFSFPGDI 191 (241)
T ss_dssp CCCCHHHHHHHHHHHTSTTCCSCCSC
T ss_pred cccccccccchhhhcccccccccccc
Confidence 55666666555555554554444433
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=1.3e-20 Score=178.14 Aligned_cols=138 Identities=18% Similarity=0.091 Sum_probs=114.9
Q ss_pred CchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCC
Q 011677 260 SSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338 (479)
Q Consensus 260 ~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~ 338 (479)
+++.++++.||+++ |.+ .++ +|+| +.||.++++++. +.++++++.|||||+
T Consensus 41 ~~di~~i~~ir~~~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~-~~l~~~~~~~iEeP~ 92 (227)
T d2mnra1 41 DQDLAVVRSIRQAV---GDD-FGIMVDYN-----------------------QSLDVPAAIKRS-QALQQEGVTWIEEPT 92 (227)
T ss_dssp HHHHHHHHHHHHHH---CTT-SEEEEECT-----------------------TCSCHHHHHHHH-HHHHHHTCSEEECCS
T ss_pred HHHHHHHHHHHHHh---CCC-cEEEEecc-----------------------ccCChHHHHHHH-HHhhhchhhhhcCcc
Confidence 34455555555555 655 456 9984 357899999875 558999999999999
Q ss_pred CccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEe
Q 011677 339 DKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 339 ~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~ 417 (479)
+++|++++++|++++ +||++||.. ++++++.++++.+++|++ ++|++++||+|++++++++|+++|+++ .+
T Consensus 93 ~~~~~~~~~~l~~~~~ipia~gE~~-~~~~~~~~~~~~~~~d~~------~~d~~~~GGit~~~~i~~~a~~~g~~~-~~ 164 (227)
T d2mnra1 93 LQHDYEGHQRIQSKLNVPVQMGENW-LGPEEMFKALSIGACRLA------MPDAMKIGGVTGWIRASALAQQFGIPM-SS 164 (227)
T ss_dssp CTTCHHHHHHHHHTCSSCEEECTTC-CSHHHHHHHHHTTCCSEE------CCBTTTTTHHHHHHHHHHHHHHHTCCB-CC
T ss_pred cccchhhhHHHHHHcCCccccCcee-EeechhhhhHhcCceeee------ecccccccchhhHHHHHHHHHHcCCcc-cc
Confidence 999999999999999 999999976 459999999999999999 999999999999999999999999996 55
Q ss_pred cCCCCCchhHHHHhHhhcCC
Q 011677 418 HRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 418 h~~get~d~~~~dlAv~~~~ 437 (479)
|.. ..+.+|++.++..
T Consensus 165 h~~----~~~~~hl~aa~~~ 180 (227)
T d2mnra1 165 HLF----QEISAHLLAATPT 180 (227)
T ss_dssp BSC----HHHHHHHHHTCTT
T ss_pred cch----hhhhhhhhhcCCc
Confidence 643 3467888877744
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.81 E-value=7.8e-21 Score=181.95 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCC----CceecccC
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPL----AMLFFSRY 385 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a----~d~v~~~~ 385 (479)
+.||.++++++. +.++++++.|||||++++|++++++|++++ +||++||... ++++++++++.++ +|++
T Consensus 74 ~~~~~~~Ai~~~-~~l~~~~i~wiEeP~~~~d~~~~~~l~~~~~ipia~gE~~~-~~~~~~~~i~~~a~~~~~Di~---- 147 (247)
T d1tzza1 74 GRFNLETGIAYA-KMLRDYPLFWYEEVGDPLDYALQAALAEFYPGPMATGENLF-SHQDARNLLRYGGMRPDRDWL---- 147 (247)
T ss_dssp TCCCHHHHHHHH-HHHTTSCCSEEECCSCTTCHHHHHHHTTTCCSCEEECTTCC-SHHHHHHHHHHSCCCTTTCEE----
T ss_pred ccccchhHHHHH-hhcchhhhhhhccccccccchhhhhhhhccccccccchhhh-hhHHHHHHHHccCCcCcceeE----
Confidence 367889999876 558999999999999999999999999999 9999999764 5999999998765 5999
Q ss_pred CCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhc
Q 011677 386 PSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGL 435 (479)
Q Consensus 386 ~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~ 435 (479)
++|++++||||++++++++|+++|+.+ ..|.++.. ....++++.++
T Consensus 148 --~~d~~~~GGit~~~~i~~~a~~~g~~~-~~~~~~~~-~~~~~~~~~~~ 193 (247)
T d1tzza1 148 --QFDCALSYGLCEYQRTLEVLKTHGWSP-SRCIPHGG-HQMSLNIAAGL 193 (247)
T ss_dssp --CCCTTTTTCHHHHHHHHHHHHHTTCCG-GGBCCSCC-BHHHHHHHHHH
T ss_pred --eeccccccchhHHHHHHHHHHHcCCCe-eccCCCcH-HHHHHHHHHHh
Confidence 999999999999999999999999985 44655443 22334444443
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.81 E-value=1.1e-20 Score=180.52 Aligned_cols=135 Identities=14% Similarity=0.130 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCc
Q 011677 262 IREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDK 340 (479)
Q Consensus 262 ~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~ 340 (479)
+.++++.+|+++ | + ..+ +|+| +.||.+++++ ++ .++++++.|||||+++
T Consensus 44 D~~~v~~ir~~~---~-d-~~l~vD~n-----------------------~~~~~~~a~~-~~-~l~~~~~~~iEeP~~~ 93 (243)
T d1r0ma1 44 DVQPVRATREAF---P-D-IRLTVDAN-----------------------SAYTLADAGR-LR-QLDEYDLTYIEQPLAW 93 (243)
T ss_dssp SHHHHHHHHHHC---T-T-SCEEEECT-----------------------TCCCGGGHHH-HH-TTGGGCCSCEECCSCT
T ss_pred hHHHHHHHHHhc---c-C-ceEEEecc-----------------------ccCchHHHHH-hh-hhhhccchhhhhhccc
Confidence 467777777766 4 3 356 8984 2456677775 34 4789999999999999
Q ss_pred cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 341 EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 341 ~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
+|++++++|++++ +||++||.. .++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|
T Consensus 94 ~d~~~~~~l~~~~~ipia~gE~~-~~~~~~~~~i~~~~~d~v------~~d~~~~GGit~~~~i~~~A~~~gi~v~~h~- 165 (243)
T d1r0ma1 94 DDLVDHAELARRIRTPLCLDESV-ASASDARKALALGAGGVI------NLKVARVGGHAESRRVHDVAQSFGAPVWCGG- 165 (243)
T ss_dssp TCSHHHHHHHHHCSSCEEESTTC-CSHHHHHHHHHHTSCSEE------EECTTTTTSHHHHHHHHHHHHHTTCCEEECC-
T ss_pred cchHHHHHHhhcCCcccccccch-hhhhhhhhhhhcccccce------ecccceeccHHHHHHHHHHHHHCCCceeccc-
Confidence 9999999999999 999999975 459999999999999999 9999999999999999999999999986654
Q ss_pred CCCCchhHHHHhHhh
Q 011677 420 SGETEDSFIADLSVG 434 (479)
Q Consensus 420 ~get~d~~~~dlAv~ 434 (479)
..++..+..+.++++
T Consensus 166 ~~~~~i~~~a~~h~~ 180 (243)
T d1r0ma1 166 MLESGIGRAHNIHLS 180 (243)
T ss_dssp CCCCHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHH
Confidence 445544444433333
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=6.8e-20 Score=178.41 Aligned_cols=116 Identities=13% Similarity=0.084 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCc
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNL 389 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~i 389 (479)
+.||.++++++. +.+++|++.|||||++++|++++++|++++ +||++||... ++++++++++.+++|++ ++
T Consensus 103 ~~~~~~~Ai~~~-~~L~~~~l~wiEePi~~~d~~~~~~L~~~~~ipIa~gE~~~-~~~~~~~~i~~~a~di~------~~ 174 (278)
T d2gl5a1 103 SLLGTNSAIQFA-KAIEKYRIFLYEEPIHPLNSDNMQKVSRSTTIPIATGERSY-TRWGYRELLEKQSIAVA------QP 174 (278)
T ss_dssp TCSCHHHHHHHH-HHHGGGCEEEEECSSCSSCHHHHHHHHHHCSSCEEECTTCC-TTHHHHHHHHTTCCSEE------CC
T ss_pred ccccchhhHHHH-HHhcccccceecccccccchhhhhhhccccccceecccccC-ChHHHhhhhccccceeE------ee
Confidence 367889999875 558999999999999999999999999999 9999999765 59999999999999999 99
Q ss_pred CccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHHHhHhhcC
Q 011677 390 WINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVGLA 436 (479)
Q Consensus 390 k~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~~~ 436 (479)
|++++||||++++++++|+++|+++ +.|+.+ +..+ +.+||+.++.
T Consensus 175 d~~~~GGit~~~kia~la~~~gi~v-~~H~~~-~~i~~~a~~hl~aa~~ 221 (278)
T d2gl5a1 175 DLCLCGGITEGKKICDYANIYDTTV-QVHVCG-GPVSTVAALHMETAIP 221 (278)
T ss_dssp CTTTTTHHHHHHHHHHHHHTTTCEE-CCCCCS-SHHHHHHHHHHHHHCT
T ss_pred ccccccchhhHHHhhhhhhhhcccc-cccccc-CchhhhhhhhhhhccC
Confidence 9999999999999999999999997 558654 4444 4556666653
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.77 E-value=8.9e-19 Score=149.45 Aligned_cols=115 Identities=20% Similarity=0.161 Sum_probs=89.0
Q ss_pred ceeeEEEEEEEecC------CCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHH
Q 011677 45 SVITKIKARQILDS------RGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERIS 118 (479)
Q Consensus 45 ~~I~~I~~~~i~ds------~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~ 118 (479)
|+|++|+.+.+--. .....+.|+|+|++|++ |+||+... +.+ ....+..+.+.++
T Consensus 1 MKI~~Ie~~~~~~p~~~~~~~~~~~iiV~i~td~Gi~----------G~Ge~~~~-------~~~--~~~~~~~~~~~~~ 61 (122)
T d2gl5a2 1 LKITSIEVFDCELKKRDQTMSSYNPVLIRVNTDSGLS----------GIGEVGLA-------YGA--GAKAGVGIIRDLA 61 (122)
T ss_dssp CCEEEEEEEECCGGGTCGGGTTCCCEEEEEEETTSCE----------EEEEESCS-------SST--THHHHHHHHHHHG
T ss_pred CEEeEEEEEEEcCCCCCCccccceeEEEEEEECCCCE----------EEEeeccc-------ccc--chHHHHHHHHHHH
Confidence 69999999998311 12356999999999994 99997542 121 2344455678899
Q ss_pred HhhcCCCCCCHHHHHHHHHhhh-ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 119 EALVGMDPILQSQIDQAMIDLD-KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 119 p~LiG~d~~~~~~id~~l~~~~-~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
|.|+|+|+.+.+++|+.|.+.. .....+++...|++|||+|+||+.||..|+|||+||||
T Consensus 62 ~~lig~~~~~~e~~~~~l~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~PL~~lLGG 122 (122)
T d2gl5a2 62 PLIVGEDPLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGG 122 (122)
T ss_dssp GGTTTSCTTCHHHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTS
T ss_pred hhhcccccchhhHHHHHHhhhcccccccCCcccchHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 9999999999999999987632 11223445567999999999999999999999999997
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=8.2e-19 Score=150.08 Aligned_cols=113 Identities=23% Similarity=0.226 Sum_probs=95.4
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. ++.+ ...+.|+|+|++|++ |+||+.+. +.|.+++...+...
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~iv~i~t~~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 65 (125)
T d1jpma2 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAV----------GWGEAPPT-----LVITGDSMDSIESA 65 (125)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEECCB-----TTTTCBCHHHHHHH
T ss_pred CEEEEEEEEEEEeeccCCeEccCeEEEEEEEEEEEEEECCCCE----------EEEEeccc-----ccccccccchhHHH
Confidence 689999998883 3333 457999999999984 99998764 46888999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
+++.++|.|+|+++.+.+++++.|.... .+. ..|++|||+|+||+.||.+|+|||++|||
T Consensus 66 i~~~~~p~l~g~~~~~~~~~~~~l~~~~----~~~--~~a~aaid~AlwDl~~K~~g~pl~~llGG 125 (125)
T d1jpma2 66 IHHVLKPALLGKSLAGYEAILHDIQHLL----TGN--MSAKAAVEMALYDGWAQMCGLPLYQMLGG 125 (125)
T ss_dssp HHHTHHHHHTTCBGGGHHHHHHHHHHSS----SSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHHhhhcccCcccHHHHHHHhhhhc----cCc--cHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 9999999999999999999998886532 111 46999999999999999999999999997
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.76 E-value=2.5e-18 Score=147.37 Aligned_cols=114 Identities=20% Similarity=0.167 Sum_probs=94.3
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+++.+- .|.+ .+.+.|+|+|+ |+ +|+||+.++.. +.|.+++.+.+...
T Consensus 1 MkI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~v~v~i~~d-G~----------~G~GE~~~~~~---~~~~~~~~~~~~~~ 66 (126)
T d2chra2 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYSE-GL----------VGVGEGGSVGG---PVWSAECAETIKII 66 (126)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEBT-TB----------CCEEECCCSTT---TTTSSCCHHHHHHH
T ss_pred CEEEEEEEEEEeccccCceEeccceEeeeeEEEEEEEcC-Cc----------eEeEeecccCC---CccccchHHHHHHH
Confidence 689999999882 3332 45789999985 88 49999877543 46888999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
+++.++|.|+|+++.+.+++++.|...- +++ ..|++|||+||||+.||..|+|||++|||
T Consensus 67 l~~~l~p~lig~~~~~~~~~~~~~~~~~----~~~--~~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d2chra2 67 VERYLAPHLLGTDAFNVSGALQTMARAV----TGN--ASAKAAVEMALLDLKARALGVSIAELLGG 126 (126)
T ss_dssp HHHHTHHHHTTSCTTCHHHHHHHHHTTC----SSC--HHHHHHHHHHHHHHHHHHTTCCHHHHTTC
T ss_pred HHHHhcccccccccccHHHHHHHhhhcc----ccc--hHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 9999999999999999999998886421 111 46999999999999999999999999997
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.1e-19 Score=169.58 Aligned_cols=139 Identities=15% Similarity=0.172 Sum_probs=108.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCC
Q 011677 261 SIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFD 339 (479)
Q Consensus 261 ~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~ 339 (479)
.+.+.++.+|+++ | + ..+ +|+| +.||.++++++. +.+++|++.|||||++
T Consensus 43 ~d~~~i~~ir~~~---~-d-~~l~vDaN-----------------------~~~s~~~A~~~~-~~l~~~~l~~iEeP~~ 93 (208)
T d1jpdx1 43 LISERMVAIRTAV---P-D-ATLIVDAN-----------------------ESWRAEGLAARC-QLLADLGVAMLEQPLP 93 (208)
T ss_dssp CHHHHHHHHHHHC---T-T-SEEEEECT-----------------------TCCCSTTHHHHH-HHHHHTTCCEEECCSC
T ss_pred cHHHHHHHHHHhc---c-c-cEEEEecc-----------------------cccchhHHHHHH-HHHHhccccccCccCC
Confidence 3577788887776 3 2 345 9984 356778888775 5589999999999999
Q ss_pred ccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 340 KEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 340 ~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
++|++++++++.. +||+.||... ++.+++++ .+++|++ ++|++++||+|++++++++|+++|+++++ |+
T Consensus 94 ~~d~~~~~~l~~~-~pi~~~E~~~-~~~~~~~l--~~~~d~~------~~d~~~~GGi~~~~~~a~~a~~~g~~~~~-~~ 162 (208)
T d1jpdx1 94 AQDDAALENFIHP-LPICADESCH-TRSNLKAL--KGRYEMV------NIKLDKTGGLTEALALATEARAQGFSLML-GC 162 (208)
T ss_dssp TTSCGGGGSSCCS-SCEEESTTCS-SGGGHHHH--BTTBSEE------EECHHHHTSHHHHHHHHHHHHHTTCEEEE-CC
T ss_pred ccCHHHHHhhhcc-cceecCCCcC-CHHHHHHH--hhccCEE------EeCCcccCCHHHHHHHHHHHHHcCCeeee-cC
Confidence 9999999888644 8999999865 58888887 4789999 99999999999999999999999999866 55
Q ss_pred CCCCchhHHHHhHhhcCCCC
Q 011677 420 SGETEDSFIADLSVGLASGQ 439 (479)
Q Consensus 420 ~get~d~~~~dlAv~~~~~~ 439 (479)
..|+..+..+.++.+-...+
T Consensus 163 ~~~~~i~~~a~~~~a~~~~~ 182 (208)
T d1jpdx1 163 MLCTSRAISAALPLVPQVSF 182 (208)
T ss_dssp CSCCHHHHHHHGGGGGGCSE
T ss_pred CchhHHHHHHHHHHhccCCC
Confidence 55665555555555443443
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.74 E-value=8.5e-18 Score=143.98 Aligned_cols=114 Identities=22% Similarity=0.139 Sum_probs=94.8
Q ss_pred ceeeEEEEEEEe--------cCC----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSR----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+- .|. .+..+.|+|+| +|++ |+||+.++.. +.|.+++.+.+...
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~~-dG~~----------G~GE~~~~~~---~~~~~~~~~~~~~~ 66 (126)
T d1nu5a2 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLV----------GIGEGGSVGG---PTWGSESAETIKVI 66 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEE----------EEEEECCSTT---TTTSSCCHHHHHHH
T ss_pred CEEEEEEEEEEecccCCCeEecceEEEeeeEEEEEEEc-CCeE----------EEeeccccCC---CccccccHHHHHHH
Confidence 689999988873 332 24579999997 5984 9999987653 46788899999888
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
+++.++|.|+|+++.+.+++++.|.... +++ ..|++|+|+||||+.||..|+|||++|||
T Consensus 67 i~~~~~p~l~g~~~~~~~~~~~~~~~~~----~~~--~~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d1nu5a2 67 IDNYLAPLLVGKDASNLSQARVLMDRAV----TGN--LSAKAAIDIALHDLKARALNLSIADLIGG 126 (126)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHC----SSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred HHHHhhhhhhhcCcccHHHHHHHhhhhh----hcc--chHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 9999999999999999999999887532 112 46999999999999999999999999997
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=2.6e-18 Score=169.34 Aligned_cols=114 Identities=10% Similarity=0.056 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCCccC----HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccC
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFDKED----WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRY 385 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D----~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~ 385 (479)
+.||.++++++ .+.++ +++.|||||++++| .+.+++|++++ +||++||... +++++.++++.+++|++
T Consensus 101 ~~~s~~~Ai~~-~~~le-~~l~w~EEPv~~~d~~~~~~~l~~lr~~~~ipIa~gE~~~-~~~~~~~~i~~~a~di~---- 173 (309)
T d1jdfa1 101 GAWSLNEAIKI-GKYLK-GSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIAT-DWRQMGHTLSLQSVDIP---- 173 (309)
T ss_dssp TBBCHHHHHHH-HHHTT-TTCSCEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSS-SHHHHHHHHHHTCCSEE----
T ss_pred CCCCHHHHHHH-HHHHh-hcchhhhhhcccCcchhhHHHHHHhhcccccceecCcccc-hhhhhhhhhhhccceee----
Confidence 35788999986 45565 78999999999888 57889999999 9999999864 59999999999999999
Q ss_pred CCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhc
Q 011677 386 PSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGL 435 (479)
Q Consensus 386 ~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~ 435 (479)
++++ ++||||++++++++|+++|+++ +.|..+++.. ++.+|++.++
T Consensus 174 --~~d~-~~GGit~~~kia~lA~~~gi~v-~~H~~~~~~i~~aa~~hlaaa~ 221 (309)
T d1jdfa1 174 --LADP-HFWTMQGSVRVAQMCHEFGLTW-GSHSDNHFDISLAMFTHVAAAA 221 (309)
T ss_dssp --BCCH-HHHCHHHHHHHHHHHHHHTCCC-BCCCCSCCHHHHHHHHHHHTTC
T ss_pred --eccc-ccccchHHHHHHHHHHhcCCCc-cccCCCCcHHHHHHHHHHHHhC
Confidence 9996 7899999999999999999996 5576666655 4556777665
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.73 E-value=1.9e-18 Score=148.15 Aligned_cols=114 Identities=19% Similarity=0.145 Sum_probs=96.2
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+- .|.+ .+++.|+|+|++|++ |+||+..++. +.|.++++..++..
T Consensus 1 Mki~~i~~~~~~lPl~~p~~~s~~~~~~~~~~iv~i~t~~G~~----------G~GE~~~~~~---~~~~~e~~~~~~~~ 67 (126)
T d1wufa2 1 MYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIH----------GYGELEAFPL---PDYTEETLSSAILI 67 (126)
T ss_dssp EECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCE----------EEEEECCCSS---TTSSSCCHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCEECcCEEEEEEEEEEEEEEECCCcE----------EEEEEeecCc---cCCChhhhhhhhhe
Confidence 689999998872 3333 457999999999984 9999876554 45899999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
+++.++|.|+|+++.+++.+++.+..+.+ + ..|++|||+||||+.||..|+|||++||.
T Consensus 68 l~~~l~p~l~g~~~~~~~~i~~~~~~~~~-----~--~~A~aaid~AlwDl~~K~~~~pl~~lLGa 126 (126)
T d1wufa2 68 IKEQLLPLLAQRKIRKPEEIQELFSWIQG-----N--EMAKAAVELAVWDAFAKMEKRSLAKMIGA 126 (126)
T ss_dssp HHHTTHHHHHHCEESSTTHHHHHHTTSCS-----C--HHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred eeecccchhcCCCchhHHHHHHHhhhccC-----c--hHHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 99999999999999999999988865432 1 35999999999999999999999999983
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.72 E-value=9.7e-18 Score=143.73 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=86.2
Q ss_pred ceeeEEEEEEEe-------cCC---------CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHH
Q 011677 45 SVITKIKARQIL-------DSR---------GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNR 108 (479)
Q Consensus 45 ~~I~~I~~~~i~-------ds~---------g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~ 108 (479)
|+|++|+++.+- +.- ....+.|+|+|++|+. |+||+.. .. .
T Consensus 1 MkIt~v~~~~~~~pl~~~~~~a~~~~~g~~~~~~~v~V~v~td~G~~----------G~Ge~~~------~~-------~ 57 (126)
T d1rvka2 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQE----------GHSFTAP------EI-------V 57 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCE----------EEEEECG------GG-------G
T ss_pred CEEEEEEEEEEEeeCCCccccccccCCCCcceeEEEEEEEEECCCCE----------EEEEeCC------HH-------H
Confidence 699999999982 111 1346999999999994 9998642 11 1
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 109 AVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 109 av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
..+.+++.++|.|+|+++.+.+.+|+.+...... ..++....|++|||+||||+.||.+|+|||+||||
T Consensus 58 ~~~~i~~~l~~~lig~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~aavdiAlwDl~~K~~g~Pl~~LLGG 126 (126)
T d1rvka2 58 RPHVIEKFVKKVLIGEDHRDRERLWQDLAHWQRG-SAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGG 126 (126)
T ss_dssp CHHHHHHTHHHHHTTSBTTCHHHHHHHHHHHHTT-TTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCC
T ss_pred HHHHHHHHHHHHHhhcCcchhhhhhhhhcccccc-CCcchhhHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 2234778899999999999999999998764322 22334578999999999999999999999999997
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=3.1e-17 Score=138.12 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=84.0
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. ++.+ .+.+.|+|+|++|++ |+||+.+. .......
T Consensus 1 mKI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~~d~G~~----------G~Ge~~~~------------~~~~~~~ 58 (115)
T d2gdqa2 1 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGID----------GWGECVDW------------LPALHVG 58 (115)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECSC------------HHHHHHH
T ss_pred CEEEEEEEEEEeeecCCceEecCeEEEeeeEEEEEEEECCcce----------EEEecCCc------------hhhhHHH
Confidence 689999988873 3333 457999999999984 99997542 1233345
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
+.+.++|.|+|+||.+.+.+++.+.... ..|++|||+||||+.||..|+|||++|||
T Consensus 59 i~~~l~~~l~g~~~~~~~~~~~~~~~~~---------~~a~aaid~AlwDl~~K~~~~Pl~~lLGG 115 (115)
T d2gdqa2 59 FTKRIIPFLLGKQAGSRLSLVRTIQKWH---------QRAASAVSMALTEIAAKAADCSVCELWGG 115 (115)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHC---------HHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHhhhhcccChhhHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 7788999999999999999998886421 36999999999999999999999999997
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.66 E-value=1.4e-16 Score=136.09 Aligned_cols=114 Identities=18% Similarity=0.083 Sum_probs=90.1
Q ss_pred CceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
||+|++|+.+.+- .|.+ .+.|.|+++++ |+. |+||+.+... +.|.++.......
T Consensus 2 m~kI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~vvv~~~~~-G~~----------G~Ge~~~~~~---~~~~~~~~~~~~~ 67 (127)
T d1r0ma2 2 MFKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHGE-GVQ----------GVAEGTMEAR---PMYREETIAGALD 67 (127)
T ss_dssp CEECCEEEEEEEEEEBC----------CEEEEEEEEEEET-TEE----------EEEECCCBSS---SSSSSCBHHHHHH
T ss_pred CceEEEEEEEEEeecccCCEECcCcEEEeeeEEEEEEEcC-CcE----------EEEEEEcCCC---cccchhhhhhhhh
Confidence 7899999999993 2222 34677777754 873 8899876543 4578888888888
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
.+.+.+.|.++|+++.+.++++..+..+.+ . ..|++|||+||||+.||.+|+|||++|||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~a~aaid~AlwDl~aK~~~~pl~~llGG 127 (127)
T d1r0ma2 68 LLRGTFLPAILGQTFANPEAVSDALGSYRG-----N--RMARAMVEMAAWDLWARTLGVPLGTLLGG 127 (127)
T ss_dssp HHHHTHHHHHTTCEESSHHHHHHTTTTSCS-----C--HHHHHHHHHHHHHHHHHHHTCBHHHHHTC
T ss_pred hhhhhcccccccCChhhHHHHhhhhcccCC-----c--hHHHHHHHHHHHHHHHHHhCCcHHHHcCC
Confidence 899999999999999999988776654321 1 46999999999999999999999999997
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.66 E-value=1.6e-16 Score=135.21 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=93.9
Q ss_pred ceeeEEEEEEEe--------cCCC----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSRG----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~g----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+.+.+. .|.| +..+.|+|+|++|++ |+||+.+... +.|.++++......
T Consensus 1 MKI~~ie~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~t~~G~~----------G~GE~~~~~~---~~~~~e~~~~~~~~ 67 (126)
T d1wuea2 1 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQ----------GFGELVAFEQ---PDYVQETLVTERFI 67 (126)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECCCSS---TTSSSCCHHHHHHH
T ss_pred CEEeEEEEEEEeccccCCEEccCeEEEeeeEEEEEEEECCCcE----------EEEEEeccCc---cccchhhhhhhhhh
Confidence 699999999883 3333 457899999999984 9999877543 34778888888888
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHh
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIA 177 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLg 177 (479)
+...+.|.++|+++.+.+++++.+....+ ...|++|||+||||+.||..|+|||++||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~aaid~AlwDl~ak~~~~pl~~lLG 125 (126)
T d1wuea2 68 IQQHLIPLLLTEAIEQPQEVSTIFEEVKG-------HWMGKAALETAIWDLYAKRQQKSLTEFFG 125 (126)
T ss_dssp HHHTHHHHHTTSCCCSTHHHHHHGGGSCS-------CHHHHHHHHHHHHHHHHHHTTSBGGGGSS
T ss_pred hhccccccccccccccHHHHHHHHhhccC-------ccHHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 98999999999999999998887765432 14589999999999999999999999998
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.65 E-value=2.1e-16 Score=134.28 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=93.5
Q ss_pred ceeeEEEEEEEe--------cCC----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQIL--------DSR----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~--------ds~----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+++.+- .+. .++.+.|+|+|++|+ |+||+.+... +.|.++++......
T Consensus 1 MKI~~i~~~~i~~Pl~~p~~~s~~~~~~~~~~iv~l~~~~g~-----------G~Ge~~~~~~---~~~~~e~~~~~~~~ 66 (125)
T d1sjda2 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGE-----------GWGECVTMAG---PLYSSEYNDGAEHV 66 (125)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSCE-----------EEEECCCBSS---SSSSSCBHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCEEccCceEeeeeEEEEEEEecCce-----------EEEEEEecCc---cccchhhhhhhhhh
Confidence 689999999882 222 346799999999886 7888766543 45888999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
++..+.|.++|.++.+.+.+++.+..+.+ ...|++|+|+||||+.||..|+|||++||.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~aaid~AlwDl~ak~~~~Pl~~lLGa 125 (125)
T d1sjda2 67 LRHYLIPALLAAEDITAAKVTPLLAKFKG-------HRMAKGALEMAVLDAELRAHERSFAAELGS 125 (125)
T ss_dssp HHHTHHHHHHHSSSCCHHHHHHHHTTSCS-------CHHHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred hhhccchhhcCCCccCHHHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 99999999999999999999988865432 146999999999999999999999999983
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Probab=99.64 E-value=7.4e-16 Score=131.05 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=90.6
Q ss_pred eeeEEEEEEEe--------cCC----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHH
Q 011677 46 VITKIKARQIL--------DSR----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNI 113 (479)
Q Consensus 46 ~I~~I~~~~i~--------ds~----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i 113 (479)
.|++|+.+.+- ++. .++.+.|+|+|++|++ |+||+..... +.|..++.......+
T Consensus 2 ~I~~ie~~~~~~Pl~~p~~~s~~~~~~~~~~iV~i~td~G~~----------G~Ge~~~~~~---~~~~~~~~~~~~~~~ 68 (127)
T d1muca2 2 LIERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVE----------GIGEATTIGG---LAYGYESPEGIKANI 68 (127)
T ss_dssp BEEEEEEEEEEEEBCC---------CEEEEEEEEEEETTSCE----------EEEEEECSTT---TTTSSCCHHHHHHHH
T ss_pred EEeEEEEEEEeccccCceEccceeEeeeeEEEEEEEeCCCcE----------EEEEeecccc---ccccccchHHHHHHH
Confidence 48889888873 222 2457999999999994 9999876533 346667777888888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 114 NERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 114 ~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
.+.+.|.+.++++.+...++..+..... ....|++|||+||||+.||.+|+|||++|||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~aaid~AlwDl~~K~~g~Pl~~lLGG 127 (127)
T d1muca2 69 DAHLAPALIGLAADNINAAMLKLDKLAK------GNTFAKSGIESALLDAQGKRLGLPVSELLGG 127 (127)
T ss_dssp HHTHHHHHTTSBTTCHHHHHHHHHHHCS------SCHHHHHHHHHHHHHHHHHHHTCBHHHHTTC
T ss_pred HhhhcccccccchhhHHHHHHHhhhhcc------cchHHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 8889999999999999988877765321 1246999999999999999999999999997
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.62 E-value=6.2e-16 Score=134.55 Aligned_cols=116 Identities=20% Similarity=0.090 Sum_probs=85.6
Q ss_pred eeeEEEEEEEe----------cCC-C---CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 46 VITKIKARQIL----------DSR-G---IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 46 ~I~~I~~~~i~----------ds~-g---~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|++|+++.+. |.. + ...+.|+|+|++|. .|+||+..+.. +.+. ....
T Consensus 2 tI~~v~~~~~r~P~~~~~~~s~a~~~~~~~~~~~V~i~td~g~----------~g~G~~~~~~~-------~~~~-~~~~ 63 (139)
T d1yeya2 2 TIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAE----------DLAGYGLVFTI-------GRGN-DVQT 63 (139)
T ss_dssp BEEEEEEEEEECCGGGCC------CCSCCCEEEEEEEEESSCT----------TCEEEEEEEEC-------STTH-HHHH
T ss_pred eEEEEEEEEEEccCccCCCCcCCcccCCCcceeEEEEEECCCC----------cEEEEEEEecC-------CChH-HHHH
Confidence 79999999983 111 1 12589999999987 47788766432 1122 2334
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhh-h------ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcc
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDL-D------KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL 179 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~-~------~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~ 179 (479)
.+.+.++|.|+|++|.+.+.+|+.+++. . ...+.+++..+|++|||+||||+.||.+|+|||+|||++
T Consensus 64 ~~~~~l~p~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saIDiALWDl~gK~~~~Pl~~LL~~~ 138 (139)
T d1yeya2 64 AAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAEL 138 (139)
T ss_dssp HHHHTTHHHHTTCBHHHHHHCHHHHHHHHHTCHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTS
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhhhc
Confidence 5667899999999999999988887642 1 112334566789999999999999999999999999973
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=5.2e-17 Score=152.49 Aligned_cols=115 Identities=14% Similarity=0.071 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHHhh---CCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCC
Q 011677 311 NFKSGEDMIEMYKELCAD---YPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYP 386 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~---~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~ 386 (479)
+.||.++++++. +.+++ +.|.|+|||++ +.++++++++.+ +||+.||+..+ .. ...+..+++|++
T Consensus 65 ~~w~~~~A~~~~-~~l~~~~~~~ie~~E~P~~--~~~~~~~l~~~~~ipIa~dEs~~~-~~--~~~~~~~~~d~v----- 133 (221)
T d1r6wa1 65 RAWTPLKGQQFA-KYVNPDYRDRIAFLEEPCK--TRDDSRAFARETGIAIAWDESLRE-PD--FAFVAEEGVRAV----- 133 (221)
T ss_dssp TCBCHHHHHHHH-HTSCTTTGGGEEEEECCBS--SHHHHHHHHHHHCCCEEESGGGGS-TT--CCCCCCTTEEEE-----
T ss_pred CCCCHHHHHHHH-HHHHHhhcCCeeeecchhh--hhhHHHHHhhcccchhhhccccch-hH--HHHHHHhcCcEE-----
Confidence 367889999875 55676 46889999985 567899999999 99999997643 33 245667899999
Q ss_pred CCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCC--chhHHHHhHhhcCCC
Q 011677 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGET--EDSFIADLSVGLASG 438 (479)
Q Consensus 387 ~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get--~d~~~~dlAv~~~~~ 438 (479)
++|++++||||++++++++|+++|++++++++ -|+ ...+.+|||.++...
T Consensus 134 -~ik~~~~GGit~~~kia~~A~~~gl~~~~~~~-~es~ig~~a~~hlaa~~~~~ 185 (221)
T d1r6wa1 134 -VIKPTLTGSLEKVREQVQAAHALGLTAVISSS-IESSLGLTQLARIAAWLTPD 185 (221)
T ss_dssp -EECHHHHCCHHHHHHHHHHHHHTTCEEEEBCS-SCCHHHHHHHHHHHHHHCTT
T ss_pred -EecccccccHHHHHHHHHHHHHcCCcEEEcCC-cchHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999877654 455 446888888877543
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.2e-15 Score=131.64 Aligned_cols=110 Identities=12% Similarity=0.036 Sum_probs=81.3
Q ss_pred CceeeEEEEEEEec-------CCC-----CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQILD-------SRG-----IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~d-------s~g-----~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
+|+|++|+++.+.- ..| ...+.|+|+|++|++ |+||+... ... ..
T Consensus 3 ~p~It~i~~~~v~~~~~~~~~~~~~~~~~~~~~iV~l~t~~Gi~----------G~Ge~~~~----------~~~---~~ 59 (133)
T d1jdfa2 3 TPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHT----------GVGEIPGG----------EKI---RK 59 (133)
T ss_dssp CCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEECC----------HHH---HH
T ss_pred CCeEEEEEEEEecccCcccccCCCCcCCccceEEEEEEECCCCE----------EEEEecCc----------HHH---HH
Confidence 68999999999931 111 224789999999994 99997541 112 22
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhccC---------CCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHh
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDKTE---------KKGELGANAILAVSIAACKAGAAEKEVPLYKHIA 177 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~---------~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLg 177 (479)
.+ +.++|.|+|+++.+.+.+++.|....... ...+....|++|||+||||+.||.+|+|||++||
T Consensus 60 ~~-~~~~~~l~g~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 133 (133)
T d1jdfa2 60 TL-EDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLG 133 (133)
T ss_dssp HH-HHHHHHHTTCBGGGHHHHHHHHHHHTGGGGTTCSCSSSSCCCCHHHHHHHHHHHHHHHHHHHHTSBGGGGST
T ss_pred HH-HhhhhhhcCCChhhHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 23 45899999999999999999887522110 0112346799999999999999999999999997
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Probab=99.58 E-value=1.6e-15 Score=130.70 Aligned_cols=109 Identities=16% Similarity=0.089 Sum_probs=80.6
Q ss_pred ceeeEEEEEEEecC-------C--C---CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQILDS-------R--G---IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~ds-------~--g---~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+++.+... . . ...+.|+|+|++|++ |+||+... . .....
T Consensus 3 p~It~ve~~~v~~~~~~~~~~~g~~~~~~~~~lV~i~td~G~~----------G~Ge~~~~----------~---~~~~~ 59 (132)
T d1bqga2 3 PVITDLKVVPVAGHDSMLLNLSGAHGPLFTRNILILTDSSGHV----------GVGEVPGG----------E---GIRKT 59 (132)
T ss_dssp CBEEEEEEEEEEEECCCEEETTEECCSEEEEEEEEEEETTSCE----------EEEEEECC----------H---HHHHH
T ss_pred CEEEEEEEEEEeccCcccccCCCCCCCcceEEEEEEEECCCcE----------EEEEeCCc----------H---hHHHH
Confidence 69999999999321 1 1 234689999999994 99998641 1 12222
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCC---------CCchhhhHHHHHHHHHHHHHHHhcCchhHHHHh
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEK---------KGELGANAILAVSIAACKAGAAEKEVPLYKHIA 177 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~---------~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLg 177 (479)
+ +.+.|.++|+++.+.+.+++.|.+...... ..+....|++|||+||||+.||.+|+|||+|||
T Consensus 60 ~-~~~~~~~ig~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 132 (132)
T d1bqga2 60 L-EDARHLLINQSIGNYQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALLG 132 (132)
T ss_dssp H-HTTHHHHBTCBGGGHHHHHHHHHHHTCC------------CHHHHHHHHHHHHHHHHHHHHHHTCBGGGGST
T ss_pred H-HHhhhhhcCcChHHHHHHHHHHHHHhcccCcccccccccccchHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 3 457899999999999999999875321100 011345799999999999999999999999997
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.58 E-value=1.4e-14 Score=123.76 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=81.5
Q ss_pred ceeeEEEEEEEec--------CC----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQILD--------SR----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~d--------s~----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+++.+-- |. ..+.+.|+|+|++|++ |+||+.... +.+.... ..
T Consensus 2 ~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~t~~G~~----------G~Ge~~~~~--------~~~~~~~-~~ 62 (130)
T d2mnra2 2 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVV----------GHSYLFAYT--------PVALKSL-KQ 62 (130)
T ss_dssp CBEEEEEEEEEEECCSSCEEETTEEECSEEEEEEEEEETTSCE----------EEEEEECSS--------GGGHHHH-HH
T ss_pred CEEEEEEEEEEEecccCCeeccceEEeeceEEEEEEEECCccc----------eeeeeeecC--------cccchhH-HH
Confidence 6899999999942 22 2357999999999984 999987632 2222222 33
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
+.+.+.|.+++.+. +...+++.+..........+....|++|+|+||||+.||..|+|||++|||
T Consensus 63 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~Pl~~lLGG 127 (130)
T d2mnra2 63 LLDDMAAMIVNEPL-APVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGA 127 (130)
T ss_dssp HHHHHHHHHTTSBS-CHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHHHHhccCCC-CHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhCCCHHHHhCC
Confidence 44567888888654 556667666553322222334467999999999999999999999999998
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.55 E-value=3.1e-15 Score=130.13 Aligned_cols=117 Identities=19% Similarity=0.125 Sum_probs=79.6
Q ss_pred ceeeEEEEEEEec------C----CCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHH
Q 011677 45 SVITKIKARQILD------S----RGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNIN 114 (479)
Q Consensus 45 ~~I~~I~~~~i~d------s----~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~ 114 (479)
|+|.+|+...+-- + ...+++.|+|+||+|+.... .+|+||+..-+ + .. ...+.
T Consensus 1 mkIvdi~~~~vPl~~p~~~s~~~~~~~~~~lV~i~Td~G~~G~G-----~~G~g~~~~~~------~---~~---~~~~~ 63 (140)
T d1tzza2 1 VRIVDVREITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKR-----VVGYGFNSNGR------Y---GQ---GGLIR 63 (140)
T ss_dssp CCEEEEEEEEEECCC---------CCCEEEEEEEEEEEECSSSE-----EEEEEECCTTS------C---CC---HHHHH
T ss_pred CeEEEEEEEEecCCCCcccccceeeceEEEEEEEEEeecccCcc-----eEeeEecCCch------h---HH---HHHHH
Confidence 5888887766631 1 24568999999997763000 02666653210 1 11 12356
Q ss_pred HHHHHhhcCCCC----------CCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcc
Q 011677 115 ERISEALVGMDP----------ILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL 179 (479)
Q Consensus 115 ~~l~p~LiG~d~----------~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~ 179 (479)
+.++|.|+|++| .+.+.+++.|.+..... ..+....|++|||+||||+.||.+|+|||+||||.
T Consensus 64 ~~~~~~lig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~aaiDiAlWDl~gK~~g~Pl~~LLgg~ 137 (140)
T d1tzza2 64 ERFASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPG-GHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAER 137 (140)
T ss_dssp HTHHHHHHTSCGGGSBCTTSSSBCHHHHHHHHTTTCCSC-CCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHH
T ss_pred HHHHHHHhcccHhhHhhhcccccChHHHHHHHHhhcccC-CCchhHHHHHHHHHHHHHHHHHHcCCcHHHHhccc
Confidence 778999999886 45688888886543222 22344679999999999999999999999999984
|
| >d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type I-alpha regulatory subunit {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit superfamily: Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit family: Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit domain: cAMP-dependent protein kinase type I-alpha regulatory subunit species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=1.7e-07 Score=63.07 Aligned_cols=41 Identities=20% Similarity=0.397 Sum_probs=38.7
Q ss_pred hHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhcC
Q 011677 3 VQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAV 43 (479)
Q Consensus 3 ~~~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~~ 43 (479)
.++|+++|.|++.|.|.+-+++..||++|+.||.+||.++.
T Consensus 5 ce~Yvq~Hniq~lLKdcIVqLCi~rPe~P~~FLreyFekLe 45 (50)
T d2ezwa1 5 CELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFEKLE 45 (50)
T ss_dssp HTTTSSTTSSHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999853
|
| >d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=97.06 E-value=0.0022 Score=53.64 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=73.1
Q ss_pred eEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 63 TVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 63 ~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
+|.|.+..++|-+ .+-+...-..|.|- || |.|. .+.-+..+++.|+|.|+|+|.....+.-+.+.++.-
T Consensus 52 sisV~l~L~dG~va~GDCaaVqySGagG----RD---PLF~---A~~~i~~~e~~v~p~L~g~d~~~Fr~~a~~~d~~~~ 121 (160)
T d1kcza2 52 SISVLLVLEDGQVAHGDCAAVQYSGAGG----RD---PLFL---AKDFIPVIEKEIAPKLIGREITNFKPMAEEFDKMTV 121 (160)
T ss_dssp EEEEEEEETTSCEEEEEECCCTTTTSTT----SC---SCCC---HHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHCEE
T ss_pred EEEEEEEeCCCCEEEeeehheeecCCCC----CC---cccc---HHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhccc
Confidence 6999999999976 22221111112221 11 3344 456677899999999999999999888877776432
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
+..++-.....+||.||.|+.|+..+.-.-+.|..
T Consensus 122 --~g~~LHtAiRYGvSQALL~A~A~a~r~tmaeVi~~ 156 (160)
T d1kcza2 122 --NGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRD 156 (160)
T ss_dssp --TTEECCHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred --CCcchhHHHHHhHHHHHHHHHHHHcCCcHHHHhHh
Confidence 22346678899999999999999988877776654
|
| >d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=97.00 E-value=0.0022 Score=53.64 Aligned_cols=104 Identities=20% Similarity=0.132 Sum_probs=72.5
Q ss_pred eEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 63 TVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 63 ~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
+|.|.+..++|-+ .+-+...-..|.|- || |.|. .+.-+..+++.|+|.|+|+|.....+.-..+..+.-
T Consensus 52 sisV~l~L~dG~va~GDCaaVqySGagG----RD---PLF~---A~~~i~~~e~~v~p~L~g~d~~~Fr~~A~~~d~~~~ 121 (160)
T d1kkoa2 52 CVSVQLILENGAVAVGDCAAVQYSGAGG----RD---PLFL---AEHFIPFLNDHIKPLLEGRDVDAFLPNARFFDKLRI 121 (160)
T ss_dssp EEEEEEEETTSCEEEEEECCCTTTTSTT----CC---CCCC---HHHHHHHHHHHTHHHHTTCBCSCSHHHHHHHHHCEE
T ss_pred EEEEEEEeCCCCEEEeeehheeecCCCC----CC---cccc---HHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhccc
Confidence 6889999999976 22221111112221 11 3344 456677899999999999999999887777775521
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
+..++-.....+||.||.|+.|+..+.-.-+.+..
T Consensus 122 --~g~~LHtAiRYGvSQALL~A~A~a~r~tmaeVi~~ 156 (160)
T d1kkoa2 122 --DGNLLHTAVRYGLSQALLDATALASGRLKTEVVCD 156 (160)
T ss_dssp --TTEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred --CCCchhHHHHHhHHHHHHHHHHHHcCccHHHHHHH
Confidence 22345677899999999999999988877776654
|
| >d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit superfamily: Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit family: Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit domain: cAMP-dependent protein kinase type II regulatory subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.80 E-value=0.0037 Score=40.19 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=30.4
Q ss_pred ccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhc
Q 011677 10 HMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKA 42 (479)
Q Consensus 10 ~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~ 42 (479)
.++++.|++.-.++++++|.|.+.|-|+||.+.
T Consensus 3 ~gL~~lL~~ftrevLR~qP~di~~faa~YF~~L 35 (39)
T d2hwna1 3 PGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRL 35 (39)
T ss_dssp TTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCchHHHHHHHHHHHH
Confidence 367899999999999999999999999999974
|