Citrus Sinensis ID: 011748

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MAEPHKERNTEAPEPMARPVGGTEYSWCKAVPTGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFIPSGKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETGE
cccccccccccccccccccccHHHHHHHHHcccccEEEEEEEEEEccccHHHHHHHHHHHHHHccccccEEEccccccEEEEEccccccEEEEEccccccccccccccccccHHHHHHHHHHHccccccccccccccccccEEEEEEEEEcccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccEEEccccccccccccccccccEEEEEcccccccccccEEEEEEEEccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccc
ccccccccccccccccccccccccccHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHEEEcccccccEEEccccccEEEEEccccccccHccccccccccHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccEEEEEEEEHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHcccccccccHHHHHHHHHHEEccccccccccccccccccccHEEEEEccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcHHHHcccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHcccHHEEcccccccccccEEEEEHcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccc
maephkernteapepmarpvggteyswckavptgtGITVLALLLSKHPNIQLLQTALNNLqnnhpilrsklhssadaktfsfitppephiqiqhfdisstsqtisdktgavspFQLILEHelnrntwtnpshqsntnsdsnlfnvsiytpsetQWVVTLRLHTSICDRASAAAVSKELLRLMTgreeggiekeydrkgevslgieefipsgkankpfwaRGVDMLGYSLnslrlsnisfvdadsprFSQVLRLQLnrdetgrlVEGCKSRGIKLCGALAAAGLIAarstkyfpshqrekYAVVTLVDCRsilepvlsddylgfYHSAILnthdvngeEELWELATRSYTSfanaknsdkhftdmndlnflmckaidnpgltpasslRTAVISvfedpivdeTNKLHQeigledyigcssvhgvgpsiaiFDTIrdgwldcacvypsplhsrEQLQQLIDDMKKILveggsfgdgetge
maephkernteapepmarpvGGTEYSWCKAVPTGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLmtgreeggiekeydrkgevsLGIEEFIPSGKANKPFWARGVDMLGYSLNSLRLSNIsfvdadsprFSQVLRLqlnrdetgrlvEGCKSRGIKLCGALAAAGLIAARstkyfpshqrEKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEggsfgdgetge
MAEPHKERNTEAPEPMARPVGGTEYSWCKAVPTGTGITVLALLLSKHPNIqllqtalnnlqnnHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFIPSGKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCgalaaagliaaRSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETGE
*********************GTEYSWCKAVPTGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILR*********KTFSFITP**PHIQIQHFDI************AVSPFQLILEHELNR*****************LFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTG*************GEVSLGIEEFIPSGKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILV************
*******************VGGTEYSWCKAVPTGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFIPSGKANKPFWARGVDMLGYSLNSLRLSNIS************LRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGG*********
*****************RPVGGTEYSWCKAVPTGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFIPSGKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETGE
*********************GTEYSWCKAVPTGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGRE************EVSLGIEEFIPSGKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGG*********
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MAEPHKERNTEAPEPMARPVGGTEYSWCKAVPTGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFIPSGKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETGE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
224088529478 predicted protein [Populus trichocarpa] 0.960 0.960 0.676 0.0
255578963474 conserved hypothetical protein [Ricinus 0.958 0.966 0.644 1e-164
147774807465 hypothetical protein VITISV_014691 [Viti 0.964 0.991 0.618 1e-161
225440845465 PREDICTED: uncharacterized protein LOC10 0.964 0.991 0.616 1e-160
224138458475 predicted protein [Populus trichocarpa] 0.962 0.968 0.568 1e-159
356534365482 PREDICTED: uncharacterized protein LOC10 0.951 0.943 0.618 1e-157
225440843477 PREDICTED: uncharacterized protein LOC10 0.960 0.962 0.580 1e-156
297740133441 unnamed protein product [Vitis vinifera] 0.914 0.990 0.593 1e-155
449462998526 PREDICTED: uncharacterized protein LOC10 0.943 0.857 0.596 1e-144
449515577526 PREDICTED: uncharacterized LOC101208906 0.943 0.857 0.594 1e-144
>gi|224088529|ref|XP_002308465.1| predicted protein [Populus trichocarpa] gi|222854441|gb|EEE91988.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/460 (67%), Positives = 390/460 (84%), Gaps = 1/460 (0%)

Query: 9   NTEAPEPMARPVGGTEYSWCKAVPTGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILR 68
           N +APEP ARPVG TEYSWC++VP GTGITVLALLLSK P+I LLQT L+ LQN+ P+LR
Sbjct: 12  NPQAPEPKARPVGATEYSWCRSVPLGTGITVLALLLSKQPDIHLLQTTLDKLQNSRPLLR 71

Query: 69  SKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRNTWT 128
           +KL  ++   TFSFITPP PH+QIQ FD+ ST+  IS+    + P+ +ILEHELN+N+W+
Sbjct: 72  TKLRFNSTTNTFSFITPPAPHVQIQPFDLPSTADIISNSDQNIDPYHIILEHELNKNSWS 131

Query: 129 NPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEG 188
               QS +++++N+F +++YT SE +W V LRLHTS CDRA+A  + +ELL LM G  +G
Sbjct: 132 AYLDQS-SDAETNVFFITLYTLSENRWAVVLRLHTSTCDRAAAVGLLRELLVLMGGENQG 190

Query: 189 GIEKEYDRKGEVSLGIEEFIPSGKANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFS 248
           GI KEY+ + EVSLGIE++IPSGK NKPFWARG+DMLGYSLNS RLSN+ FVDADSPR S
Sbjct: 191 GITKEYENEVEVSLGIEDYIPSGKGNKPFWARGIDMLGYSLNSFRLSNLDFVDADSPRGS 250

Query: 249 QVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDC 308
           QV+RLQ+N D+T +L++GC SRGIKL GALAAAGLIAA+STK  P HQ EKYAVVTL+DC
Sbjct: 251 QVVRLQMNSDDTQKLLDGCMSRGIKLSGALAAAGLIAAQSTKDLPDHQMEKYAVVTLIDC 310

Query: 309 RSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLN 368
           RSIL+PVLS +++GFYHSA+LNTHDV+G   LW+LA R Y ++ NAKN++KHFTDM DLN
Sbjct: 311 RSILDPVLSSNHIGFYHSAMLNTHDVSGGVMLWDLAKRCYMAYTNAKNNNKHFTDMGDLN 370

Query: 369 FLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIA 428
           FLMCKAI+NPGLTP+SS+RTA ISVFEDP++D+TN++H ++G+EDY+GCSSVHGVGPS+A
Sbjct: 371 FLMCKAIENPGLTPSSSMRTAFISVFEDPVIDDTNEMHGKVGVEDYVGCSSVHGVGPSVA 430

Query: 429 IFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEG 468
           IFDT+R+G LDCACVYPSPLHSR+Q+Q+LIDDMK+ILV+G
Sbjct: 431 IFDTVRNGRLDCACVYPSPLHSRDQMQKLIDDMKRILVDG 470

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255578963|ref|XP_002530334.1| conserved hypothetical protein [Ricinus communis] gi|223530138|gb|EEF32050.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147774807|emb|CAN71367.1| hypothetical protein VITISV_014691 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440845|ref|XP_002276400.1| PREDICTED: uncharacterized protein LOC100257880 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224138458|ref|XP_002322819.1| predicted protein [Populus trichocarpa] gi|222867449|gb|EEF04580.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356534365|ref|XP_003535726.1| PREDICTED: uncharacterized protein LOC100782381 [Glycine max] Back     alignment and taxonomy information
>gi|225440843|ref|XP_002276376.1| PREDICTED: uncharacterized protein LOC100263016 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740133|emb|CBI30315.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462998|ref|XP_004149221.1| PREDICTED: uncharacterized protein LOC101208906 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515577|ref|XP_004164825.1| PREDICTED: uncharacterized LOC101208906 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2083183475 AT3G52610 "AT3G52610" [Arabido 0.968 0.974 0.517 7.8e-126
TAIR|locus:2083183 AT3G52610 "AT3G52610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
 Identities = 248/479 (51%), Positives = 329/479 (68%)

Query:     1 MAEPHKERNTEAPEPMARPVGGTEYSWCKAVPTGTGITVLALLLSKHPNIXXXXXXXXXX 60
             M+EP++      P+ M RPVGGTEYSWC+A+  GTGI V+ALLLS+ P +          
Sbjct:     1 MSEPNR-----VPKSMTRPVGGTEYSWCRAIDGGTGIAVIALLLSRTPKLQNLQNTLDKL 55

Query:    61 XXXHPILRSKLHSSADAKTFSFI--TPPEPHIQIQHFDISSTSQTISDKTG-AVSPFQLI 117
                HP LRS +   A A +FSF+  +  + H++I  FD  ST+Q I D       P ++I
Sbjct:    56 QIYHPTLRSNIRFDASANSFSFVVTSAADSHVEIHPFDSVSTAQIIRDSDDPCADPHRII 115

Query:   118 LEHELNRNTWTNPSHQSNTNSDSNLFNVSIY--TPSETQWVVTLRLHTSICDRASAAAVS 175
             LEHE+N+NTW NP H+    S+S +F VS+Y  T    Q ++T RL+T+  DR +A  + 
Sbjct:   116 LEHEMNKNTWINP-HRW-IKSESRVFIVSLYDLTDDGEQRILTFRLNTAAVDRTAAVTLL 173

Query:   176 KELLRLMTGREEGGIEKEYDRKGEVSLG--IEEFIPSGKANKPFWARGVDMLGYSLNSLR 233
             +E ++       G        +  V LG  IEE IPSGK +KPFWARG+D+LGYSLN+ R
Sbjct:   174 REFMKETAADGFGNGPVVAATETAVGLGKAIEELIPSGKGDKPFWARGIDVLGYSLNAFR 233

Query:   234 LSNISFVDAD-SPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCXXXXXXXXXXXRSTKYF 292
              SN++FVDA+ S R SQ++RL+L+RD+T +LV GCK+RG+KL             S+K  
Sbjct:   234 FSNLNFVDAENSNRRSQLVRLKLDRDQTLKLVAGCKARGLKLWAALASSALIAAYSSKNL 293

Query:   293 PSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFA 352
             P +Q EKYAVVTL DCRSILEP L+ +  GFYH+ IL+THD+ GEE+LW+LA R Y SF 
Sbjct:   294 PPYQGEKYAVVTLSDCRSILEPPLTSNDFGFYHAGILHTHDLTGEEKLWDLAKRCYDSFT 353

Query:   353 NAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLH-QEIGL 411
             ++KNS+K FTDM+DLNFLMCKAI+NP LTP+SSLRTA IS+FEDP++DE+ +     +G+
Sbjct:   354 SSKNSNKQFTDMSDLNFLMCKAIENPNLTPSSSLRTAFISIFEDPVIDESPEPELASLGV 413

Query:   412 EDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGS 470
             +DYIGC+S+HGVGPS+A+FD +RDG LDCA VYPSPLHSREQ+  LI  MK IL+EG +
Sbjct:   414 QDYIGCASIHGVGPSVAVFDALRDGKLDCAFVYPSPLHSREQMDGLIQHMKTILLEGSA 472


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      478       454   0.00093  118 3  11 22  0.42    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  291 KB (2151 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  39.74u 0.09s 39.83t   Elapsed:  00:00:01
  Total cpu time:  39.74u 0.09s 39.83t   Elapsed:  00:00:01
  Start:  Sat May 11 11:00:12 2013   End:  Sat May 11 11:00:13 2013
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_VI000598
hypothetical protein (478 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
PRK12467 3956 peptide synthase; Provisional 100.0
PRK12467 3956 peptide synthase; Provisional 100.0
PRK10252 1296 entF enterobactin synthase subunit F; Provisional 100.0
PRK12316 5163 peptide synthase; Provisional 100.0
PRK05691 4334 peptide synthase; Validated 100.0
PRK12316 5163 peptide synthase; Provisional 100.0
PRK05691 4334 peptide synthase; Validated 100.0
PF07247480 AATase: Alcohol acetyltransferase; InterPro: IPR01 100.0
PRK09294416 acyltransferase PapA5; Provisional 100.0
PF00668301 Condensation: Condensation domain; InterPro: IPR00 99.97
TIGR02946446 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b 99.96
COG4908439 Uncharacterized protein containing a NRPS condensa 99.87
TIGR03443 1389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 99.43
COG1020 642 EntF Non-ribosomal peptide synthetase modules and 99.16
PLN02481436 Omega-hydroxypalmitate O-feruloyl transferase 99.09
PLN02663431 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinn 98.99
PLN03157447 spermidine hydroxycinnamoyl transferase; Provision 98.98
PLN00140444 alcohol acetyltransferase family protein; Provisio 98.95
PF03007263 WES_acyltransf: Wax ester synthase-like Acyl-CoA a 98.88
PF02458432 Transferase: Transferase family; InterPro: IPR0034 98.88
PF07428413 Tri3: 15-O-acetyltransferase Tri3; InterPro: IPR00 98.38
PF1374591 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. 95.29
TIGR02927590 SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo 94.65
PF00198231 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe 94.35
PRK14843347 dihydrolipoamide acetyltransferase; Provisional 94.12
COG4845219 Chloramphenicol O-acetyltransferase [Defense mecha 94.01
PLN02528416 2-oxoisovalerate dehydrogenase E2 component 93.79
PLN02226463 2-oxoglutarate dehydrogenase E2 component 93.69
PF00302206 CAT: Chloramphenicol acetyltransferase; InterPro: 93.32
TIGR01349435 PDHac_trf_mito pyruvate dehydrogenase complex dihy 93.29
PRK13757219 chloramphenicol acetyltransferase; Provisional 93.26
PRK11857306 dihydrolipoamide acetyltransferase; Reviewed 93.02
PF06974153 DUF1298: Protein of unknown function (DUF1298); In 92.93
PRK05704407 dihydrolipoamide succinyltransferase; Validated 92.64
TIGR01348546 PDHac_trf_long pyruvate dehydrogenase complex dihy 92.62
PF0140239 RHH_1: Ribbon-helix-helix protein, copG family; In 92.18
PTZ00144418 dihydrolipoamide succinyltransferase; Provisional 92.15
PLN02744539 dihydrolipoyllysine-residue acetyltransferase comp 90.9
TIGR01347403 sucB 2-oxoglutarate dehydrogenase complex dihydrol 90.14
PHA0162356 hypothetical protein 89.7
PRK11856411 branched-chain alpha-keto acid dehydrogenase subun 88.51
PF0386950 Arc: Arc-like DNA binding domain; InterPro: IPR005 87.13
PF0553451 HicB: HicB family; InterPro: IPR008651 This family 86.99
PF1265144 RHH_3: Ribbon-helix-helix domain 84.77
PHA0151382 mnt Mnt 83.62
PRK1167590 LexA regulated protein; Provisional 82.64
PHA0174860 hypothetical protein 80.97
>PRK12467 peptide synthase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-35  Score=358.02  Aligned_cols=413  Identities=14%  Similarity=0.154  Sum_probs=282.9

Q ss_pred             cCCCcc-cceeeeec-c--CCCceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEe
Q 011748           18 RPVGGT-EYSWCKAV-P--TGTGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQ   93 (478)
Q Consensus        18 R~l~~~-e~~~~~~~-~--~~~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~   93 (478)
                      -|+++. +..|+... .  .+.|+....++++|.+|.++|++||+.+++|||+|||+|...++.+.+++.......+...
T Consensus      1117 ~PlS~~Q~~lw~~~~~~~~~~~Y~~~~~~~l~g~ld~~~L~~Al~~vv~rH~~LRT~f~~~~~~~~q~v~~~~~~~~~~~ 1196 (3956)
T PRK12467       1117 LPLSYAQERQWFLWQLEPGSAAYHIPQALRLKGPLDIEALERSFDALVARHESLRTTFVQEDGRTRQVIHPVGSLTLEEP 1196 (3956)
T ss_pred             cccchHHHHHHHHHhhCCCCccceeeEEEEECCCcCHHHHHHHHHHHHHhCCcceEEEEccCCeEEEEECCCCCCceEEe
Confidence            366665 55576332 2  2336777899999999999999999999999999999998877666665544322233333


Q ss_pred             ecccCCccccccCCCCCCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHH
Q 011748           94 HFDISSTSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAA  173 (478)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~  173 (478)
                      ++.         ..+....++...++.+..     .+|++    .++|++|+.+++.+++++.+++++||+++||||+.+
T Consensus      1197 ~~~---------~~~~~~~~~~~~~~~~~~-----~~fdl----~~~pl~R~~l~~~~~~~~~l~l~~HHii~DG~S~~i 1258 (3956)
T PRK12467       1197 LLL---------AADKDEAQLKVYVEAEAR-----QPFDL----EQGPLLRVGLLRLAADEHVLVLTLHHIVSDGWSMQV 1258 (3956)
T ss_pred             ecC---------cccchHHHHHHHHHHHhh-----CCCCC----CCCcceeEEEEEECCCeEEEEEecchhhhhHhHHHH
Confidence            331         111112234444444433     34555    789999999999888999999999999999999999


Q ss_pred             HHHHHHHHhcCccCCCCccccccCCCCCcchhhcc-------CCC--CCCchhhhcchhhhhcccccCcccCCCCCCCC-
Q 011748          174 VSKELLRLMTGREEGGIEKEYDRKGEVSLGIEEFI-------PSG--KANKPFWARGVDMLGYSLNSLRLSNISFVDAD-  243 (478)
Q Consensus       174 ~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~-  243 (478)
                      |++||..+|.+...+.. ...+   ..+.++.++.       ...  .....||++.+..      ..+...+|...+. 
T Consensus      1259 ll~el~~~Y~~~~~g~~-~~l~---~~~~~y~dy~~wq~~~l~~~~~~~~~~yW~~~L~~------~~~~~~lp~~~~~~ 1328 (3956)
T PRK12467       1259 LVDELVALYAAYSQGQS-LQLP---ALPIQYADYAVWQRQWMDAGERARQLAYWKAQLGG------EQPVLELPTDRPRP 1328 (3956)
T ss_pred             HHHHHHHHHHHHhCCCC-CCCC---CCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHhcC------CCCcccCCCCCCCC
Confidence            99999999987554432 0011   1112333322       111  1245799988742      1122234433221 


Q ss_pred             --CCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCce
Q 011748          244 --SPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYL  321 (478)
Q Consensus       244 --~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~v  321 (478)
                        .........+.++++.+++|+++||++|+|++++++|||++++++|+  +   ++++++|+|+++|....  . ++++
T Consensus      1329 ~~~~~~~~~~~~~l~~~~~~~L~~~a~~~~vT~~~vl~aA~a~lL~r~s--g---~~dvv~G~pvsgR~~~~--~-~~~v 1400 (3956)
T PRK12467       1329 AVQSHRGARLAFELPPALAEGLRALARREGVTLFMLLLASFQTLLHRYS--G---QDDIRVGVPIANRNRAE--T-EGLI 1400 (3956)
T ss_pred             cccCcCceEEEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh--C---CCCEEEEecccCCCchh--h-hcce
Confidence              12344566789999999999999999999999999999999999987  5   67999999999998532  3 6799


Q ss_pred             eeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCcc--c
Q 011748          322 GFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPI--V  399 (478)
Q Consensus       322 G~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~  399 (478)
                      |+|+|++|+++++++..+|.++++++++++.+.+.|++..     +..+..........     ..+++|.+..++-  .
T Consensus      1401 G~fvNtlplR~~~~~~~t~~~~l~~v~~~~~~a~~hq~~p-----~~~i~~~l~~~r~~-----~~~pLFq~~~~~~~~~ 1470 (3956)
T PRK12467       1401 GFFVNTQVLRAEVDGQASFQQLLQQVKQAALEAQAHQDLP-----FEQLVEALQPERSL-----SHSPLFQVMFNHQRDD 1470 (3956)
T ss_pred             eeeeeeeEEEEecCCCCCHHHHHHHHHHHHHHHHhccCCC-----HHHHHHHhcccccC-----CCCCceeEEEEeeccc
Confidence            9999999999999999999999999999999999998742     22222221111111     1223444211110  0


Q ss_pred             ccccccccceEEeeEEEEeecccccCeEEEEEEEecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 011748          400 DETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSFGDGETGE  478 (478)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~~~~~~~~  478 (478)
                      .........+.++.+.....  .....+.+.+...++++.+.+.|++++|+++++++++++|..+|++++.+|+.++++
T Consensus      1471 ~~~~~~~~~~~~~~~~~~~~--~~~~dL~l~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~ 1547 (3956)
T PRK12467       1471 HQAQAQLPGLSVESLSWESQ--TAQFDLTLDTYESSEGLQASLTYATDLFEASTIERLAGHWLNLLQGLVADPERRLGE 1547 (3956)
T ss_pred             ccccccCCCceeEeeecCCc--ccccceEEEEEecCCeEEEEEEEeCCcCCHHHHHHHHHHHHHHHHHHhhCccCceee
Confidence            00001122344433321111  112345555555567899999999999999999999999999999999999998864

>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK10252 entF enterobactin synthase subunit F; Provisional Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2 Back     alignment and domain information
>PRK09294 acyltransferase PapA5; Provisional Back     alignment and domain information
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics Back     alignment and domain information
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT Back     alignment and domain information
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only] Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase Back     alignment and domain information
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase Back     alignment and domain information
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional Back     alignment and domain information
>PLN00140 alcohol acetyltransferase family protein; Provisional Back     alignment and domain information
>PF03007 WES_acyltransf: Wax ester synthase-like Acyl-CoA acyltransferase domain; InterPro: IPR004255 This entry represents the N terminus (approximately 170 residues) of a number of hypothetical plant proteins Back     alignment and domain information
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes Back     alignment and domain information
>PF07428 Tri3: 15-O-acetyltransferase Tri3; InterPro: IPR009992 This family represents a conserved region approximately 400 residues long within 15-O-acetyltransferase (Tri3), which seems to be restricted to ascomycete fungi Back     alignment and domain information
>PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A Back     alignment and domain information
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2 Back     alignment and domain information
>PRK14843 dihydrolipoamide acetyltransferase; Provisional Back     alignment and domain information
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms] Back     alignment and domain information
>PLN02528 2-oxoisovalerate dehydrogenase E2 component Back     alignment and domain information
>PLN02226 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2 Back     alignment and domain information
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>PRK13757 chloramphenicol acetyltransferase; Provisional Back     alignment and domain information
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>PF06974 DUF1298: Protein of unknown function (DUF1298); InterPro: IPR009721 This entry represents the C terminus (approximately 170 residues) of a number of hypothetical plant proteins Back     alignment and domain information
>PRK05704 dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number Back     alignment and domain information
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex Back     alignment and domain information
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>PHA01623 hypothetical protein Back     alignment and domain information
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Back     alignment and domain information
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site Back     alignment and domain information
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins Back     alignment and domain information
>PF12651 RHH_3: Ribbon-helix-helix domain Back     alignment and domain information
>PHA01513 mnt Mnt Back     alignment and domain information
>PRK11675 LexA regulated protein; Provisional Back     alignment and domain information
>PHA01748 hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
3fot_A519 15-O-acetyltransferase; fusarium head blight, tric 3e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A* Length = 519 Back     alignment and structure
 Score = 83.1 bits (204), Expect = 3e-17
 Identities = 64/497 (12%), Positives = 137/497 (27%), Gaps = 58/497 (11%)

Query: 18  RPVGGTE--YSWCKAVPTGTGITVLAL----------LLSKHPNIQLLQTALNNLQNNHP 65
           R   G E      +          +A           LL+     ++ + AL + +  HP
Sbjct: 31  RRCVGAEAIVGLEEKNRRALYDLYIATSLRNIAPASTLLTLQNLKEMFELALLDARFEHP 90

Query: 66  ILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPFQLILEHELNRN 125
                +    +         PE +   + +        I  +  A S   L  E E  R 
Sbjct: 91  ECACTVSWDDEVPAIITYESPESNESARDWA----RGCIHVQPTAKSALDLWSEMEEGRA 146

Query: 126 TWTN--PSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMT 183
              +  PS        S++   S   P +    +    +    D         +L RL+ 
Sbjct: 147 AANDNTPSKSIELFLLSDVSTDSTPIPQDATVEILFHSNHLFWDGIGCRKFVGDLFRLVG 206

Query: 184 GREEGGIEKEY------DRKGEVSLGIEEFI-----PSGKANKPFWARGVDMLGYSLNSL 232
                   +E            +S  + + +       G             L  +  S 
Sbjct: 207 SYIGRSDSREMKKIQWGQEIKNLSPPVVDSLKLDINTLGSEFDDKCTEYTSALVANYKSR 266

Query: 233 RLSNISFVDADSPRFSQVLRLQLNRDETGRLVEGCKSR---GIKLCGALAAAGLIA-ARS 288
            +              + +  +L+ DE+  +V+  K+R   G  +     AA ++A    
Sbjct: 267 GMKF-----QPGLALPRCVIHKLSADESIDIVKAVKTRLGPGFTISHLTQAAIVLALLDH 321

Query: 289 TKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSA------------ILNTHDVNG 336
            K       E +   T VD R  L   ++ ++     +A            + +  +   
Sbjct: 322 LKPNDLSDDEVFISPTSVDGRRWLREDIASNFYAMCQTAAVVRIENLKSITVSHKDEKEL 381

Query: 337 EEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVIS---- 392
           +    E A R+          +     +         +  +    P       +      
Sbjct: 382 QVRALESACRNIKKSYRQWLENPFLQALGLRVHNFEASYLHAKPIPFEGEANPLFISDGI 441

Query: 393 --VFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIRDGWLDCACVYPSPLHS 450
              F    + +T      + +E       V+   P +AI             +Y    ++
Sbjct: 442 NERFIPHEIKQTATGENVLSVESI--DFVVNQSLPYLAIRLDSWRDASTLNIIYNDANYT 499

Query: 451 REQLQQLIDDMKKILVE 467
             ++Q+ +  + + ++ 
Sbjct: 500 EAEVQKYLQSIVEFMLA 516
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
1l5a_A436 Amide synthase, VIBH; nonribosomal peptide synthet 100.0
2jgp_A520 Tyrocidine synthetase 3; multifunctional enzyme, a 100.0
4hvm_A493 Tlmii; PSI-biology, midwest center for structural 100.0
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 100.0
2xhg_A466 Tyrocidine synthetase A; isomerase, nonribosomal p 100.0
1q9j_A422 PAPA5, polyketide synthase associated protein 5; c 100.0
3fot_A519 15-O-acetyltransferase; fusarium head blight, tric 99.94
4g22_A439 Hydroxycinnamoyl-COA shikimate/quinate hydroxycinn 99.16
2bgh_A421 Vinorine synthase; VS, BAHD, acetyltransferase, au 99.12
2xr7_A453 Malonyltransferase; xenobiotics, naphthols; HET: M 98.98
2e1v_A454 Acyl transferase; BAHD superfamily, seleno-methion 98.92
2rkv_A451 Trichothecene 3-O-acetyltransferase; BAHD superfam 98.68
3mae_A256 2-oxoisovalerate dehydrogenase E2 component, dihyd 92.52
2k9i_A55 Plasmid PRN1, complete sequence; plasmid COPY cont 92.25
1scz_A233 E2, dihydrolipoamide succinyltransferase; COA-depe 92.0
3b8k_A239 PDCE2;, dihydrolipoyllysine-residue acetyltransfer 91.99
3qoq_A69 Alginate and motility regulator Z; protein-DNA com 90.97
2ba3_A51 NIKA; dimer, bacterial conjugation, relaxase, DNA 90.69
1dpb_A243 Dihydrolipoyl-transacetylase; dihydrolipoamide ace 90.49
3rqc_A224 Probable lipoamide acyltransferase; alpha beta fol 90.23
1baz_A53 ARC repressor; transcription regulation; 1.90A {En 90.12
2ii3_A262 Lipoamide acyltransferase component of branched-C 88.59
1q23_A219 Chloramphenicol acetyltransferase; CAT I, trimer, 88.04
2cpg_A45 REPA protein, transcriptional repressor COPG; DNA- 88.0
3cla_A213 Type III chloramphenicol acetyltransferase; transf 87.87
3l60_A250 Branched-chain alpha-keto acid dehydrogenase; stru 87.77
1p94_A76 Plasmid partition protein PArg; ribbon-helix-helix 86.03
2kel_A56 SVTR protein, uncharacterized protein 56B; homodim 85.76
2gpe_A52 Bifunctional protein PUTA; ribbon-helix-helix, DNA 85.12
2ay0_A58 Bifunctional PUTA protein; ribbon-helix-helix, DNA 82.63
1nla_A64 Transcriptional repressor ARC; 3(10) helix, beta-r 81.17
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 Back     alignment and structure
Probab=100.00  E-value=1.4e-41  Score=339.06  Aligned_cols=384  Identities=14%  Similarity=0.073  Sum_probs=269.7

Q ss_pred             CceEEEEEEEecCCCHHHHHHHHHHHHHhCcccceeeccCCCCcceEecCCCCCCceEeecccCCccccccCCCCCCchH
Q 011748           35 TGITVLALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISSTSQTISDKTGAVSPF  114 (478)
Q Consensus        35 ~~~~~~~~~l~g~ld~~~L~~A~~~li~rhp~Lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (478)
                      .++....++++|.+|.++|++||..+++|||+||++|...++    ++.......+.+.++         ...+.....+
T Consensus        20 ~y~~~~~~~l~g~ld~~~L~~A~~~lv~rh~~LRt~f~~~~~----~v~~~~~~~~~~~d~---------~~~~~~~~~~   86 (436)
T 1l5a_A           20 LDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGE----LYWHPFSPPIDYQDL---------SIHLEAEPLA   86 (436)
T ss_dssp             CSEEEEEEEEESSCCHHHHHHHHHHHHHTCGGGGEEECTTCC----EEECSSCCCCEEEEC---------TTCTTHHHHH
T ss_pred             ccceeEEEEEeCCCCHHHHHHHHHHHHHHhheeEEEEEecCC----eECCCcCCCccEEeC---------CCCCCHHHHH
Confidence            366778899999999999999999999999999999987654    333333335555554         1111112234


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCeEEEEEEecCCCceEEEEEecceecchhhHHHHHHHHHHHhcCccCCCCcccc
Q 011748          115 QLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTLRLHTSICDRASAAAVSKELLRLMTGREEGGIEKEY  194 (478)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~~~~~~~pl~r~~l~~~~~~~~~l~~~~hH~i~DG~S~~~~~~~l~~~y~~~~~~~~~~~~  194 (478)
                      .+.+.+....     +|++    .++|++|+.+++.+++++.|++.+||+++||||+.+|+++|.++|.+...+..   +
T Consensus        87 ~~~~~~~~~~-----~fdl----~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~~~~~g~~---~  154 (436)
T 1l5a_A           87 WRQIEQDLQR-----SSTL----IDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQT---P  154 (436)
T ss_dssp             HHHHHHHHTS-----CCCC----BTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHTCC---C
T ss_pred             HHHHHHHhcC-----CCCc----CCCCCeEEEEEEEcCCEEEEEEeehhheecHhHHHHHHHHHHHHHHHHhcCCC---C
Confidence            4445555443     4444    78999999999988899999999999999999999999999999986544432   1


Q ss_pred             ccCCCCCcchhhccC------CC---CCCchhhhcchhhhhcccccCcccCCCCCCCCCCCcceEEEEecCHHHHHHHHH
Q 011748          195 DRKGEVSLGIEEFIP------SG---KANKPFWARGVDMLGYSLNSLRLSNISFVDADSPRFSQVLRLQLNRDETGRLVE  265 (478)
Q Consensus       195 ~~~~~~~~~~~~~~~------~~---~~~~~~w~~~l~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~  265 (478)
                      +  . +..++.+++.      ..   ...+.||++.+...      .+...+|..............+.++.+.+++|++
T Consensus       155 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~------~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~  225 (436)
T 1l5a_A          155 T--A-AFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREA------PDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLK  225 (436)
T ss_dssp             C--C-CCCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTS------CCCCBCCTTCCGGGCCEEEEEEECCHHHHHHHHH
T ss_pred             C--C-CccCHHHHHHHHHHhhccHhHHHHHHHHHHHhcCC------CCcccCCCCCCCCcccceeeEEecCHHHHHHHHH
Confidence            1  1 2223433321      11   12567998887421      1112334322222233456778999999999999


Q ss_pred             HHHhcCCChHHHHHHHHHHHHhcccCCCCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCCCchhHHHHHH
Q 011748          266 GCKSRGIKLCGALAAAGLIAARSTKYFPSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELAT  345 (478)
Q Consensus       266 ~~r~~~vT~~~~l~aa~~~~l~~~~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~~~~~f~~l~~  345 (478)
                      +|+++|+|++.+++|||+.++++++  +    +++++|+|+++|....  . ++++|+|+|++|+++++++..+|.++++
T Consensus       226 ~a~~~~~t~~~~l~aa~~~~L~~~~--g----~dv~ig~~~~~R~~~~--~-~~~vG~f~n~lplr~~~~~~~t~~~~l~  296 (436)
T 1l5a_A          226 LANANQIGWPDALVALCALYLESAE--P----DAPWLWLPFMNRWGSV--A-ANVPGLMVNSLPLLRLSAQQTSLGNYLK  296 (436)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHS--T----TCCEEEEEECCCTTSG--G-GGSCSCCCEEEEEECCCCTTCBHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHhh--C----CceEEeeecccCCChH--H-hcCcceEEEEEEEEEecCCCCCHHHHHH
Confidence            9999999999999999999999987  3    4899999999998632  2 6799999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCccccchhHHHHHHHHhhCCCCCCCccccceeeEeecCcccccccccccceEEeeEEEEeecccccC
Q 011748          346 RSYTSFANAKNSDKHFTDMNDLNFLMCKAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGP  425 (478)
Q Consensus       346 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (478)
                      ++++++.+.++|+...     +..+........+.   ....+.+++. . +.  ... ..+.+.++........  .. 
T Consensus       297 ~v~~~~~~~~~h~~~~-----~~~i~~~l~~~~~~---~~lf~~~~~~-~-~~--~~~-~~~~~~~~~~~~~~~~--~~-  360 (436)
T 1l5a_A          297 QSGQAIRSLYLHGRYR-----IEQIEQDQGLNAEQ---SYFMSPFINI-L-PF--ESP-HFADCQTELKVLASGS--AE-  360 (436)
T ss_dssp             HHHHHHHHHHHTTTSC-----HHHHHHHTTCCTTC---CBCCCSEEEE-E-CC--CCC-CCTTCEEEEEEEEECC--CC-
T ss_pred             HHHHHHHHHhhhcCCC-----HHHHHHHhcccccC---CCccceEEEe-e-cc--Ccc-ccCCCeeEEEecCCCC--cc-
Confidence            9999999999988642     22222222111111   1122233322 1 11  111 2334444443322111  11 


Q ss_pred             eEEEEEE-EecCeeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhccC---CCCCCC
Q 011748          426 SIAIFDT-IRDGWLDCACVYPSPLHSREQLQQLIDDMKKILVEGGSF---GDGETG  477 (478)
Q Consensus       426 ~~~~~~~-~~~g~l~l~~~y~~~~~~~~~i~~~~~~~~~~L~~~~~~---~~~~~~  477 (478)
                      .+.+.+. ..+|++.+.+.|+.++|++++|++++++|..+|++++.+   |+.+++
T Consensus       361 ~l~l~v~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~  416 (436)
T 1l5a_A          361 GINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVA  416 (436)
T ss_dssp             SEEEEEEECTTSCEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHH
T ss_pred             ceEEEEEecCCCcEEEEEEeChhhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHH
Confidence            5566555 356899999999999999999999999999999999999   998875
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} Back     alignment and structure
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Back     alignment and structure
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} Back     alignment and structure
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2 Back     alignment and structure
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A* Back     alignment and structure
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A Back     alignment and structure
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina} Back     alignment and structure
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum} Back     alignment and structure
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A Back     alignment and structure
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A* Back     alignment and structure
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Back     alignment and structure
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A Back     alignment and structure
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Back     alignment and structure
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Back     alignment and structure
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa} Back     alignment and structure
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64} Back     alignment and structure
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Back     alignment and structure
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Back     alignment and structure
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A Back     alignment and structure
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Back     alignment and structure
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Back     alignment and structure
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A* Back     alignment and structure
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Back     alignment and structure
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0 Back     alignment and structure
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3 Back     alignment and structure
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus} Back     alignment and structure
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A* Back     alignment and structure
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11 Back     alignment and structure
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 478
d1l5aa1174 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 6 1e-04
d1q9ja1175 c.43.1.2 (A:1-175) Polyketide synthase associated 9e-04
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]} Length = 174 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: NRPS condensation domain (amide synthase)
domain: VibH
species: Vibrio cholerae [TaxId: 666]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 22/149 (14%)

Query: 40  LALLLSKHPNIQLLQTALNNLQNNHPILRSKLHSSADAKTFSFITPPEPHIQIQHFDISS 99
            +L L+   +  LL  AL+   +   + R+                 +  +    F    
Sbjct: 25  HSLRLTGPLDTTLLLRALHLTVSEIDLFRA-------------RFSAQGELYWHPFSPPI 71

Query: 100 TSQTISDKTGAVSPFQLILEHELNRNTWTNPSHQSNTNSDSNLFNVSIYTPSETQWVVTL 159
             Q +S    A       +E +L          +S+T  D+ + +  +Y  S ++ ++  
Sbjct: 72  DYQDLSIHLEAEPLAWRQIEQDL---------QRSSTLIDAPITSHQVYRLSHSEHLIYT 122

Query: 160 RLHTSICDRASAAAVSKELLRLMTGREEG 188
           R H  + D        + L +       G
Sbjct: 123 RAHHIVLDGYGMMLFEQRLSQHYQSLLSG 151
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 175 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
d1l5aa2250 VibH {Vibrio cholerae [TaxId: 666]} 99.86
d1l5aa1174 VibH {Vibrio cholerae [TaxId: 666]} 99.83
d1q9ja2238 Polyketide synthase associated protein 5, PapA5 {M 99.81
d1q9ja1175 Polyketide synthase associated protein 5, PapA5 {M 99.74
d3claa_213 Chloramphenicol acetyltransferase, CAT {Escherichi 93.53
d1q23a_214 Chloramphenicol acetyltransferase, CAT {Escherichi 93.02
d1scza_233 Dihydrolipoamide succinyltransferase {Escherichia 91.98
d1b5sa_242 Dihydrolipoamide acetyltransferase {Bacillus stear 91.82
d1q23a_214 Chloramphenicol acetyltransferase, CAT {Escherichi 91.66
d3claa_213 Chloramphenicol acetyltransferase, CAT {Escherichi 87.65
d1dpba_243 Dihydrolipoamide acetyltransferase {Azotobacter vi 83.3
d2cpga_43 Transcriptional repressor CopG {Streptococcus agal 82.72
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: NRPS condensation domain (amide synthase)
domain: VibH
species: Vibrio cholerae [TaxId: 666]

Probab=99.86  E-value=1.4e-20  Score=170.33  Aligned_cols=233  Identities=10%  Similarity=-0.044  Sum_probs=159.3

Q ss_pred             CchhhhcchhhhhcccccCcccCCCCCCC-CCCCcceEEEEecCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccCC
Q 011748          214 NKPFWARGVDMLGYSLNSLRLSNISFVDA-DSPRFSQVLRLQLNRDETGRLVEGCKSRGIKLCGALAAAGLIAARSTKYF  292 (478)
Q Consensus       214 ~~~~w~~~l~~~~~~~~~~~~~~lp~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~r~~~vT~~~~l~aa~~~~l~~~~~~  292 (478)
                      .+.||++.+...       +...++...+ ..........+.|+.+.+++|.++|+++|+|++.+++|+|+++++++   
T Consensus         6 d~~yW~~~L~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~~~~s~~~~l~aa~~~~l~~~---   75 (250)
T d1l5aa2           6 DKQFWQGYLREA-------PDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANANQIGWPDALVALCALYLESA---   75 (250)
T ss_dssp             HHHHHHHHHHTS-------CCCCBCCTTCCGGGCCEEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhCCC-------CCCCCCCCCCCCCCCCceEEEEEECHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhh---
Confidence            478999988421       1111221111 11234456778999999999999999999999999999999988753   


Q ss_pred             CCCCCCceEEEeecccCCcCCCCCCCCceeeeeeeccccccCCCchhHHHHHHHHHHHHHhhccCCCccccchhHHHHHH
Q 011748          293 PSHQREKYAVVTLVDCRSILEPVLSDDYLGFYHSAILNTHDVNGEEELWELATRSYTSFANAKNSDKHFTDMNDLNFLMC  372 (478)
Q Consensus       293 ~~~~~~~~~~~~~v~~R~~~~~~~~~~~vG~f~~~~~~~~~~~~~~~f~~l~~~v~~~~~~~~~~~~~~~~~~~~~~l~~  372 (478)
                      +   ++++++|+++++|....  . .+++|+|+|++|+++.++++.+|.++++++++.+.+.++|+...     +..+..
T Consensus        76 ~---~~~~vig~~~~~R~~~~--~-~~~~G~~~n~lP~r~~~~~~~t~~~ll~~v~~~~~~~~~h~~~~-----~~~i~~  144 (250)
T d1l5aa2          76 E---PDAPWLWLPFMNRWGSV--A-ANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYR-----IEQIEQ  144 (250)
T ss_dssp             S---TTCCEEEEEECCCTTSG--G-GGSCSCCCEEEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSC-----HHHHHH
T ss_pred             c---cceeeccceecCCCChh--h-hhCeEeEEeeeeEEEEeCCCCCHHHHHHHHHHHHHHhhhhcCCC-----HHHHHH
Confidence            3   45788999999997532  2 67999999999999999999999999999999999999998642     222222


Q ss_pred             HHhhCCCCCCCccccceeeEeecCcccccccccccceEEeeEEEEeecccccCeEEEEEEEe-cCeeEEEEEcCCCCCCH
Q 011748          373 KAIDNPGLTPASSLRTAVISVFEDPIVDETNKLHQEIGLEDYIGCSSVHGVGPSIAIFDTIR-DGWLDCACVYPSPLHSR  451 (478)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~l~~~y~~~~~~~  451 (478)
                      .......   .....+.++++..   ...  ...+.......... ....  ..+.+.+... +|++.+.+.|+..+|++
T Consensus       145 ~~~~~~~---~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~-~~~~--~dl~l~v~~~~~~~l~l~~~y~~~~~~~  213 (250)
T d1l5aa2         145 DQGLNAE---QSYFMSPFINILP---FES--PHFADCQTELKVLA-SGSA--EGINFTFRGSPQHELCLDITADLASYPQ  213 (250)
T ss_dssp             HTTCCTT---CCBCCCSEEEEEC---CCC--CCCTTCEEEEEEEE-ECCC--CSEEEEEEECTTSCEEEEEEEETTTSCH
T ss_pred             HhcCCCC---CCCccceEEEeec---cCc--cCCCCCceEEEeee-ccce--eeEEEEEEEcCCceEEEEEEEehhhCCH
Confidence            2211111   1122223333211   011  11122222211111 1111  1244444333 56899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCCC
Q 011748          452 EQLQQLIDDMKKILVEGGSFGDGETGE  478 (478)
Q Consensus       452 ~~i~~~~~~~~~~L~~~~~~~~~~~~~  478 (478)
                      ++|++++++|..+|++++.+|+.++++
T Consensus       214 ~~i~~l~~~~~~ll~~l~~~p~~~~~~  240 (250)
T d1l5aa2         214 SHWQSHCERFPRFFEQLLARFQQVEQD  240 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCcccch
Confidence            999999999999999999999999875
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure