Citrus Sinensis ID: 011769

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MAVNQFIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESESRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLVCLRL
ccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcc
cccEEEcccccccccccHHHHHHHHHHcccccEEEEEEccccccccccccccccccccHHHccccccccccccEEccHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHEEEHHHHHccc
mavnqfiggrscgitgtSFQRRAINKMGkafpiysmviappncsfgvinrakngfnpaimccgsvsdqhasdyitinpsgvgesesrksaatsQSCVQNVQLDLIMLslpaiagqaIEPMAQLMETAYigrlgplelasagVSTSIFNILSKVFNIPLLSVATSFvaedisrssskdstsdsscpnvsyngcdestdrkllpsVSTALVLALTIGILEALAMYFGSGLFLDIMGissassmripaQRFLSLRAIGAPAVVLSLAIQGIfrgfkdtrtpvfclglgnfsavFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRtilsipnmknlhfgdylrsggyLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSfakgdyntVKEITHFALKTGLFTGVTLAVILGASFNYLATlftsdtqvlGIVRSGLLVRVYLLLVCLRL
mavnqfiggrscgitgtSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESESRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDIsrssskdstsdsscpnVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLVCLRL
MAVNQFIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESESRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEdisrssskdstsdssCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIvrsgllvrvylllvclrl
*****FIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITI*******************CVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVA********************************LLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLVCL**
*******GGRSCGITGTSFQ**********************************************************************************DLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDI*********************CDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLVCLRL
MAVNQFIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPS****************CVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAE******************VSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLVCLRL
*AVNQFIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVS****SDYITINPSGVGESESRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS**DSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLVCLRL
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHii
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiii
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MAVNQFIGGRSCGITGTSFQRRAINKMGKAFPIYSMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESESRKSAATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLVCLRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query478 2.2.26 [Sep-21-2011]
Q9SVE7560 MATE efflux family protei yes no 0.870 0.742 0.570 1e-129
Q84K71521 MATE efflux family protei no no 0.702 0.644 0.444 5e-83
Q9SYD6515 MATE efflux family protei no no 0.728 0.675 0.398 2e-74
Q9SFB0526 MATE efflux family protei no no 0.717 0.652 0.384 6e-69
Q8W4G3559 MATE efflux family protei no no 0.642 0.549 0.252 1e-10
Q945F0543 Enhanced disease suscepti no no 0.661 0.581 0.217 2e-07
Q58119450 Uncharacterized transport yes no 0.711 0.755 0.217 7e-06
Q9WZS2464 Probable multidrug resist yes no 0.711 0.732 0.204 4e-05
>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2 Back     alignment and function desciption
 Score =  462 bits (1190), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/426 (57%), Positives = 315/426 (73%), Gaps = 10/426 (2%)

Query: 41  PNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESESRKSAATSQSCVQNV 100
           PN  F  + R K+  NP    CG V      D    + S + +        T  +   ++
Sbjct: 53  PNPMFPFVTRRKSQTNPD---CGVVKLGEEDD----SCSSLDKLPEVNGVHTGVARPVDI 105

Query: 101 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLS 160
           + +L+MLSLPAIAGQAI+P+  LMETAYIGRLG +EL SAGVS +IFN +SK+FNIPLLS
Sbjct: 106 KRELVMLSLPAIAGQAIDPLTLLMETAYIGRLGSVELGSAGVSMAIFNTISKLFNIPLLS 165

Query: 161 VATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEAL 220
           VATSFVAEDI++ +++D  S+ S  ++   G  E   RK L SVSTALVLA+ IGI EAL
Sbjct: 166 VATSFVAEDIAKIAAQDLASEDSQSDIPSQGLPE---RKQLSSVSTALVLAIGIGIFEAL 222

Query: 221 AMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVF 280
           A+   SG FL +MGI S S M IPA++FL LRA+GAPA V+SLA+QGIFRGFKDT+TPV+
Sbjct: 223 ALSLASGPFLRLMGIQSMSEMFIPARQFLVLRALGAPAYVVSLALQGIFRGFKDTKTPVY 282

Query: 281 CLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNL 340
           CLG+GNF AVF+FP+ +Y F++GV GAAIS+V SQY V +LM+  LNKR IL  P + +L
Sbjct: 283 CLGIGNFLAVFLFPLFIYKFRMGVAGAAISSVISQYTVAILMLILLNKRVILLPPKIGSL 342

Query: 341 HFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAA 400
            FGDYL+SGG++LGRTL+ ++T+T++TS+AARQG  AMAAHQIC+QVWL+VS+L DA A+
Sbjct: 343 KFGDYLKSGGFVLGRTLSVLVTMTVATSMAARQGVFAMAAHQICMQVWLAVSLLTDALAS 402

Query: 401 SGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGI 460
           SGQALIASS +K D+  VKE+T F LK G+ TG+ LA++LG SF+ +A LF+ D +VL I
Sbjct: 403 SGQALIASSASKRDFEGVKEVTTFVLKIGVVTGIALAIVLGMSFSSIAGLFSKDPEVLRI 462

Query: 461 VRSGLL 466
           VR G+L
Sbjct: 463 VRKGVL 468

Arabidopsis thaliana (taxid: 3702)
>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2 Back     alignment and function description
>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1 Back     alignment and function description
>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1 Back     alignment and function description
>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1 Back     alignment and function description
>sp|Q58119|Y709_METJA Uncharacterized transporter MJ0709 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0709 PE=3 SV=1 Back     alignment and function description
>sp|Q9WZS2|NORM_THEMA Probable multidrug resistance protein NorM OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=norM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
255561365447 DNA-damage-inducible protein f, putative 0.748 0.800 0.764 1e-154
224084133484 predicted protein [Populus trichocarpa] 0.797 0.787 0.724 1e-153
297744535 604 unnamed protein product [Vitis vinifera] 0.843 0.667 0.645 1e-144
359474812 601 PREDICTED: MATE efflux family protein 3, 0.836 0.665 0.640 1e-139
224078541442 predicted protein [Populus trichocarpa] 0.742 0.803 0.687 1e-137
224105071430 predicted protein [Populus trichocarpa] 0.744 0.827 0.687 1e-136
357495629 586 Transporter, putative [Medicago truncatu 0.807 0.658 0.620 1e-135
449454410 603 PREDICTED: MATE efflux family protein 3, 0.767 0.608 0.664 1e-133
449500206493 PREDICTED: MATE efflux family protein 3, 0.767 0.744 0.662 1e-132
357495631 615 Transporter, putative [Medicago truncatu 0.807 0.627 0.578 1e-130
>gi|255561365|ref|XP_002521693.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223539084|gb|EEF40680.1| DNA-damage-inducible protein f, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/365 (76%), Positives = 324/365 (88%), Gaps = 7/365 (1%)

Query: 102 LDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSV 161
           ++LIMLS+PAIAGQAIEP+AQLMETAY+GRLGPLELASAGVS SIFNI+SKVFNIPLLSV
Sbjct: 1   MELIMLSIPAIAGQAIEPLAQLMETAYVGRLGPLELASAGVSMSIFNIISKVFNIPLLSV 60

Query: 162 ATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALA 221
           ATSFVAEDISR+++ DS SD    N      +  ++RKLLPSVSTAL+LA  IG+ EALA
Sbjct: 61  ATSFVAEDISRNAN-DSGSDGGDSN------NIISERKLLPSVSTALLLATGIGLFEALA 113

Query: 222 MYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFC 281
           MY GSG+FL++MGISSAS MR+PA++FL +RAIGAPAVVL LAIQGIFRGFKDT+TPV C
Sbjct: 114 MYLGSGVFLNMMGISSASPMRVPAEKFLKIRAIGAPAVVLYLAIQGIFRGFKDTKTPVLC 173

Query: 282 LGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLH 341
           LGLGN SAVF+FP+LM+YF+LGVTGAAISTV SQY+V+ LMIWYLNKRT+LS+P+++ L 
Sbjct: 174 LGLGNLSAVFLFPILMHYFRLGVTGAAISTVASQYIVSFLMIWYLNKRTVLSLPSVEGLD 233

Query: 342 FGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAAS 401
           FG YLRSGG+LLGRTLAAVMTITLSTS+AARQGALAMAAHQICLQVWLSVS+L DAQAAS
Sbjct: 234 FGGYLRSGGFLLGRTLAAVMTITLSTSMAARQGALAMAAHQICLQVWLSVSLLVDAQAAS 293

Query: 402 GQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIV 461
            QALIASS AKGDY+ VKEIT  +LK GLFTG++LA+ILG SF+ LATLFT D +VL IV
Sbjct: 294 SQALIASSSAKGDYSRVKEITFCSLKLGLFTGISLAIILGVSFSSLATLFTKDAEVLAIV 353

Query: 462 RSGLL 466
           R+G+L
Sbjct: 354 RTGVL 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224084133|ref|XP_002307222.1| predicted protein [Populus trichocarpa] gi|222856671|gb|EEE94218.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297744535|emb|CBI37797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474812|ref|XP_002278724.2| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224078541|ref|XP_002305555.1| predicted protein [Populus trichocarpa] gi|222848519|gb|EEE86066.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224105071|ref|XP_002313675.1| predicted protein [Populus trichocarpa] gi|222850083|gb|EEE87630.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357495629|ref|XP_003618103.1| Transporter, putative [Medicago truncatula] gi|355519438|gb|AET01062.1| Transporter, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|449454410|ref|XP_004144948.1| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Cucumis sativus] gi|449473238|ref|XP_004153826.1| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449500206|ref|XP_004161035.1| PREDICTED: MATE efflux family protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357495631|ref|XP_003618104.1| Transporter, putative [Medicago truncatula] gi|355519439|gb|AET01063.1| Transporter, putative [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2121783560 AT4G38380 [Arabidopsis thalian 0.857 0.732 0.557 5.3e-111
TAIR|locus:2057135521 AT2G38330 "AT2G38330" [Arabido 0.734 0.673 0.428 1.3e-77
TAIR|locus:2008236515 AT1G51340 [Arabidopsis thalian 0.546 0.506 0.436 1.2e-71
TAIR|locus:2077477526 FRD3 "FERRIC REDUCTASE DEFECTI 0.573 0.520 0.416 9.8e-70
TAIR|locus:2050140559 AT2G21340 [Arabidopsis thalian 0.502 0.429 0.242 1.1e-13
UNIPROTKB|P28303459 dinF "DinF MATE Transporter" [ 0.518 0.540 0.253 8e-11
TAIR|locus:2120267543 EDS5 "AT4G39030" [Arabidopsis 0.504 0.443 0.211 2.6e-09
TIGR_CMR|CPS_2888462 CPS_2888 "MATE efflux family p 0.675 0.699 0.214 6.1e-08
TIGR_CMR|BA_3296469 BA_3296 "MATE efflux family pr 0.533 0.543 0.251 1.7e-07
UNIPROTKB|Q4KFD2471 pmpM "Multidrug resistance pro 0.516 0.524 0.240 2.5e-07
TAIR|locus:2121783 AT4G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 234/420 (55%), Positives = 299/420 (71%)

Query:    41 PNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPSGVGESESRKSAATSQSCVQNV 100
             PN  F  + R K+  NP    CG V      D    + S + +        T  +   ++
Sbjct:    53 PNPMFPFVTRRKSQTNPD---CGVVKLGEEDD----SCSSLDKLPEVNGVHTGVARPVDI 105

Query:   101 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLS 160
             + +L+MLSLPAIAGQAI+P+  LMETAYIGRLG +EL SAGVS +IFN +SK+FNIPLLS
Sbjct:   106 KRELVMLSLPAIAGQAIDPLTLLMETAYIGRLGSVELGSAGVSMAIFNTISKLFNIPLLS 165

Query:   161 VATSFVAEXXXXXXXXXXXXXXXCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEAL 220
             VATSFVAE                 ++   G  E   RK L SVSTALVLA+ IGI EAL
Sbjct:   166 VATSFVAEDIAKIAAQDLASEDSQSDIPSQGLPE---RKQLSSVSTALVLAIGIGIFEAL 222

Query:   221 AMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVF 280
             A+   SG FL +MGI S S M IPA++FL LRA+GAPA V+SLA+QGIFRGFKDT+TPV+
Sbjct:   223 ALSLASGPFLRLMGIQSMSEMFIPARQFLVLRALGAPAYVVSLALQGIFRGFKDTKTPVY 282

Query:   281 CLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNL 340
             CLG+GNF AVF+FP+ +Y F++GV GAAIS+V SQY V +LM+  LNKR IL  P + +L
Sbjct:   283 CLGIGNFLAVFLFPLFIYKFRMGVAGAAISSVISQYTVAILMLILLNKRVILLPPKIGSL 342

Query:   341 HFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAA 400
              FGDYL+SGG++LGRTL+ ++T+T++TS+AARQG  AMAAHQIC+QVWL+VS+L DA A+
Sbjct:   343 KFGDYLKSGGFVLGRTLSVLVTMTVATSMAARQGVFAMAAHQICMQVWLAVSLLTDALAS 402

Query:   401 SGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGI 460
             SGQALIASS +K D+  VKE+T F LK G+ TG+ LA++LG SF+ +A LF+ D +VL I
Sbjct:   403 SGQALIASSASKRDFEGVKEVTTFVLKIGVVTGIALAIVLGMSFSSIAGLFSKDPEVLRI 462
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050140 AT2G21340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P28303 dinF "DinF MATE Transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TAIR|locus:2120267 EDS5 "AT4G39030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2888 CPS_2888 "MATE efflux family protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3296 BA_3296 "MATE efflux family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KFD2 pmpM "Multidrug resistance protein PmpM" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SVE7MATE3_ARATHNo assigned EC number0.57040.87020.7428yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 5e-73
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 3e-48
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 4e-35
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 6e-30
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-23
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-22
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-22
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 1e-20
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-17
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 3e-15
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-15
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 7e-15
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 5e-13
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 2e-11
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-10
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 1e-10
PRK10367441 PRK10367, PRK10367, DNA-damage-inducible SOS respo 3e-10
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-08
cd13148441 cd13148, MATE_like_3, Uncharacterized subfamily of 2e-07
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 7e-07
pfam01554161 pfam01554, MatE, MatE 7e-07
pfam01554161 pfam01554, MatE, MatE 1e-05
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 3e-05
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 4e-05
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 4e-04
PRK10189478 PRK10189, PRK10189, MATE family multidrug exporter 0.002
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 0.003
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 0.003
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 0.004
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information 
 Score =  236 bits (604), Expect = 5e-73
 Identities = 113/380 (29%), Positives = 180/380 (47%), Gaps = 37/380 (9%)

Query: 103 DLIMLSLPAIAGQAIEPMAQLMETAYIGRLG-PLELASAGVSTSIFNILSKVFNIPLLSV 161
           +++ L+LPAI      P+  L++TA +G LG    L +  + T+IFN L  +F    +  
Sbjct: 4   EILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLRMG- 62

Query: 162 ATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALA 221
            T  VA+ +     ++                       +  +  AL+LAL IG+L  L 
Sbjct: 63  TTGLVAQALGAGDREE----------------------AIALLVRALLLALAIGLLLILL 100

Query: 222 MYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFC 281
                 L L ++G S+A  +   A+++L +R +GAPAV+L+    G FRG +DTRTP+  
Sbjct: 101 QSPLLALALLLLGASAA--VAALARQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLIL 158

Query: 282 LGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLH 341
             +GN   + + P+ ++    GV GAA++TV +QY+  LL +W L +R  L   ++    
Sbjct: 159 QIVGNVVNIVLDPLFVFGLGWGVAGAALATVIAQYLGALLGLWLLRRRVRLLGKSLSRRL 218

Query: 342 F-----GDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLAD 396
                     +    +  RTLA +      T++AAR G + +AA+QI LQ WL  S   D
Sbjct: 219 PSKAALKRLFKLNRDIFIRTLALLAAFLFFTALAARLGDVILAANQILLQFWLLSSYFLD 278

Query: 397 AQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQ 456
             A + +AL+  +   GD    + +    L+ GL  GV LA++       +  LFT D  
Sbjct: 279 GFAYAAEALVGRALGAGDRKAARRVARRLLQWGLGLGVLLALLFFLGGEPIIRLFTDDPA 338

Query: 457 VLGIVRSGLLVRVYLLLVCL 476
           VL       L   YL  + L
Sbjct: 339 VL------ALAATYLPWLAL 352

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|182293 PRK10189, PRK10189, MATE family multidrug exporter; Provisional Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.97
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.96
PRK15099416 O-antigen translocase; Provisional 99.96
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.94
PRK00187464 multidrug efflux protein NorA; Provisional 99.93
PRK10189478 MATE family multidrug exporter; Provisional 99.92
PRK01766456 multidrug efflux protein; Reviewed 99.91
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.91
PF03023 451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.9
COG0728 518 MviN Uncharacterized membrane protein, putative vi 99.9
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 99.86
PRK10459 492 colanic acid exporter; Provisional 99.85
TIGR01695502 mviN integral membrane protein MviN. This model re 99.84
COG2244 480 RfbX Membrane protein involved in the export of O- 99.8
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.76
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.75
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.73
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.72
PRK15099416 O-antigen translocase; Provisional 99.69
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.68
PRK10459492 colanic acid exporter; Provisional 99.62
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.54
COG2244480 RfbX Membrane protein involved in the export of O- 99.49
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.3
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.27
KOG1347473 consensus Uncharacterized membrane protein, predic 99.15
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.72
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.53
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.41
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.05
PF04506 549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 97.08
KOG2864 530 consensus Nuclear division RFT1 protein [Cell cycl 96.66
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 96.56
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 94.2
COG4267467 Predicted membrane protein [Function unknown] 93.55
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 93.34
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=5.7e-46  Score=383.94  Aligned_cols=353  Identities=28%  Similarity=0.444  Sum_probs=333.5

Q ss_pred             ccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCC
Q 011769           97 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK  176 (478)
Q Consensus        97 ~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~  176 (478)
                      .+...|+++++++|++++++.+.+++++|+.++||+|++++||.++++++..+...+. .|++.++++++||++|+||  
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~-~gl~~g~~~liaq~~Ga~~--   88 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIF-IGLGTGTTVLVAQAIGAGD--   88 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHcCCc--
Confidence            4457899999999999999999999999999999999999999999999999999999 5699999999999999988  


Q ss_pred             CCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhH
Q 011769          177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA  256 (478)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~  256 (478)
                                          ++++++..+++++++++++++..++.+.+.++++.+++.++|  +.+.+.+|+++..++.
T Consensus        89 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~  146 (455)
T COG0534          89 --------------------RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGA  146 (455)
T ss_pred             --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHH
Confidence                                788889999999999999999999999999999999998887  9999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhc-cC-CchhHHHHHHHHHHHHHHHHHHHHHHhcCc---
Q 011769          257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-FK-LGVTGAAISTVGSQYMVTLLMIWYLNKRTI---  331 (478)
Q Consensus       257 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~-~~-~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~---  331 (478)
                      |+..++.+..+++|+.||+|.+++..+++.++|+++||+|+++ ++ +|+.|+++||++++++..++.+++++|+++   
T Consensus       147 ~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~  226 (455)
T COG0534         147 PFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLS  226 (455)
T ss_pred             HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence            9999999999999999999999999999999999999999999 57 999999999999999999999999987763   


Q ss_pred             cc---cccccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011769          332 LS---IPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIAS  408 (478)
Q Consensus       332 ~~---~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~v~~  408 (478)
                      ..   ..++++..+|++++.|.|..++.+.+...+.+.+.+++++|++.+|+|++..++.++.++++.|++++.++++++
T Consensus       227 ~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~  306 (455)
T COG0534         227 LFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQ  306 (455)
T ss_pred             hhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11   113334457999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 011769          409 SFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLV  474 (478)
Q Consensus       409 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~~~~~~~~~~~  474 (478)
                      ++|++|+|++|+..+.+++++++++...++++.++++++.++|++|+++.+.....+++..+..++
T Consensus       307 ~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~  372 (455)
T COG0534         307 NLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPF  372 (455)
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988877765

>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 2e-26
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  110 bits (277), Expect = 2e-26
 Identities = 66/377 (17%), Positives = 131/377 (34%), Gaps = 41/377 (10%)

Query: 104 LIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVAT 163
           LI L+ P +     +     ++T   G +  +++A+  ++ SI+     +F + LL    
Sbjct: 14  LIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSI-LFGVGLLMALV 72

Query: 164 SFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMY 223
             VA+                              K+   V   L+LAL + +     ++
Sbjct: 73  PVVAQLNGAGR----------------------QHKIPFEVHQGLILALLVSVPIIAVLF 110

Query: 224 FGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLG 283
             +   +  M +  A  M      ++       PA +L  A++    G   T+  +    
Sbjct: 111 Q-TQFIIRFMDVEEA--MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGF 167

Query: 284 LGNFSAVFMFPMLMY----YFKLGVTGAAISTVGSQYMVTLLMIWYLNKR---------T 330
           +G    + +  + +Y      +LG  G  ++T    +++ LL+++Y+             
Sbjct: 168 IGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227

Query: 331 ILSIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLS 390
               P  K        R G  +       V    +   + A  G+  +AAHQ+ L     
Sbjct: 228 TFHKPQPK--ELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL 285

Query: 391 VSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATL 450
           V M   +  A+    +     + D        +  L TGL T    A++       +A L
Sbjct: 286 VFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALL 345

Query: 451 FTSDTQVLGIVRSGLLV 467
           +T +  V+ +    LL 
Sbjct: 346 YTENQVVVALAMQLLLF 362

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.89
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.8e-37  Score=320.93  Aligned_cols=352  Identities=19%  Similarity=0.235  Sum_probs=319.0

Q ss_pred             ccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCC
Q 011769           97 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK  176 (478)
Q Consensus        97 ~~~~~~~i~~~~~P~~~~~~~~~~~~~v~~~~ig~lG~~~laa~~~~~~l~~~~~~i~~~gl~~~~~~~vs~~~g~~~~~  176 (478)
                      .++..|++++.++|.++++++..+.+.+|+.+++|+|++++|+++++.++.++...+. .|++.+..+.++|++|++|  
T Consensus         7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~-~g~~~~~~~~is~~~g~~~--   83 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG-VGLLMALVPVVAQLNGAGR--   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHH-HHHHHHHGGGCTTTTSSSS--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCC--
Confidence            4567899999999999999999999999999999999999999999999988777766 6799999999999988877  


Q ss_pred             CCCCCCCCCCCCCCCCCcccchhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCccchHHHHHHHHHHHhhH
Q 011769          177 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA  256 (478)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~  256 (478)
                                          .++.++.+++++.+..+++++.+++ ..+.++++.+++.+++  +.+.+..|+++.+++.
T Consensus        84 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~  140 (460)
T 3mkt_A           84 --------------------QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEA--MATKTVGYMHAVIFAV  140 (460)
T ss_dssp             --------------------TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTH--HHHHHHHHHTTGGGHH
T ss_pred             --------------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHH
Confidence                                5556688999999999999998765 6788999898887776  8899999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhHHHHHhc-c---CCchhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 011769          257 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-F---KLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL  332 (478)
Q Consensus       257 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~v~i~l~~~li~~-~---~~Gi~Gaa~a~~i~~~~~~~~~~~~l~~~~~~  332 (478)
                      ++..+....++++|+.||++.+++.++++.++|+++++++++. +   ++|+.|+++++++++++..++.+++++|+++.
T Consensus       141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~  220 (460)
T 3mkt_A          141 PAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRL  220 (460)
T ss_dssp             HHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence            9999999999999999999999999999999999999999986 3   79999999999999999999998888776543


Q ss_pred             ccc-------cccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011769          333 SIP-------NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQAL  405 (478)
Q Consensus       333 ~~~-------~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~l~~~~~~ai~~a~~~~  405 (478)
                      .+.       +.++..+|++++++.|.+++.+..++.+.+++.+++++|++++++|++++++..+..++..+++++.+|.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~  300 (460)
T 3mkt_A          221 AHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIR  300 (460)
T ss_dssp             CCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221       2334457999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 011769          406 IASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLVRVYLLLV  474 (478)
Q Consensus       406 v~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~~~~~~~~~~~  474 (478)
                      +++++|++|.+++|+..+++++++..++++.++++.++++++.++|++|+++.+.....+++.....++
T Consensus       301 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~  369 (460)
T 3mkt_A          301 VGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCM  369 (460)
T ss_dssp             HHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998888888777776665544
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00