Citrus Sinensis ID: 011845

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
Protein Sequence
MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESASGFDLDDFIRNKLNLDPDQLDVLLEKTSNPSVVRKVNYPRRRIFRPEDKTAATLA
Secondary Structure (PSIPRED)
cEEEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccHHHccccccHHHHHHHHccccHHHHHHHHcccccccHHHHcccHHHHHccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHcccEEEEEcccccccEEEEcccccEEEccccccccHcc
Coil and Loop (DISEMBL)
mkcidywpedgrpyvALGKVLSKQSKVAEARAIYAkgsqatqgenpyIWQCWAVLENKLGNIgkarelfdastvadkghiaAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRqatkcnpkscASWIAWSQMEMQQENNLAARQLFERAVqaspknrfawHVWGIFEANMGFIDKGKKLLKIghavnprdpvLLQSLALLEYKYSTANLARKLFRRaseidprhqpvwIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEedqgnsvrAEEIRNLYFQQrtevvddaswvmgfMDIIDPALDRIKQLLNLEkssykepsayspgdnestddeasvsrysglyvgndlesasgfdlddfirnklnldpdqLDVLLektsnpsvvrkvnyprrrifrpedktaatla
Flexible Loop (DISEMBL)
mkcidywpedgrpyvALGKVLSKQSKVAEARAIYAkgsqatqgenpYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFrqatkcnpKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFrraseidprhqpVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSsykepsayspgdnestddeASVSRYSGLYVGNDLESASGFDLDDFIRNKLNLDPDQLDVllektsnpsvvrkvnyprrrifrpedktaatla
Low Complexity Region (SEG)
MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESASGFDLDDFIRNKLNLDPDQLDVLLEKTSNPSVVRKVNYPRRRIFRPEDKTAATLA
Disordered region (IsUnstruct)
**CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLN****************************YSGLYVGNDLESASGFDLDDFIRNKLNLDPDQLDVLLE******************************
Disordered Region (DISOPRED)
MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESASGFDLDDFIRNKLNLDPDQLDVLLEKTSN***************R**********
Disordered Region (DISEMBL)
MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSS*********************SRYSGLYVGNDLESASGFDLDDFIRNKLNLDPDQLDVLLEKTSNPSVVRKVNYPRRRIFRPEDKTAATLA
Disordered Region (DISPRO)
MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEK**************************************SGFDLDDFIRNKLNLDPDQLDVLLEKTSNPSVVRKVNYPRRRIFRP*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTxxxxxxxxxxxxxxxxxxxxxTKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESASGFDLDDFIRNKLNLDPDQLDVLLEKTSNPSVVRKVNYPRRRIFRPEDKTAATLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	476	2.2.26 [Sep-21-2011]
Q9FNS4	662	PsbB mRNA maturation fact	N/A	no	0.771	0.554	0.354	1e-63
Q54XP4	705	Crooked neck-like protein	yes	no	0.718	0.485	0.250	2e-16
Q7SGD2	695	Pre-mRNA-splicing factor	N/A	no	0.609	0.417	0.235	2e-15
Q9HF03	724	Pre-mRNA-splicing factor	N/A	no	0.449	0.295	0.261	3e-14
P0CO10	726	Pre-mRNA-splicing factor	yes	no	0.449	0.294	0.256	9e-14
P0CO11	726	Pre-mRNA-splicing factor	N/A	no	0.449	0.294	0.256	9e-14
Q527H0	691	Pre-mRNA-splicing factor	N/A	no	0.581	0.400	0.239	4e-13
Q9BZJ0	848	Crooked neck-like protein	yes	no	0.584	0.327	0.233	5e-13
Q4WT84	676	Pre-mRNA-splicing factor	yes	no	0.457	0.322	0.257	1e-12
P63155	690	Crooked neck-like protein	yes	no	0.584	0.402	0.227	2e-12

>sp|Q9FNS4|MBB1_CHLRE PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii GN=MBB1 PE=2 SV=1

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 203/378 (53%), Gaps = 11/378 (2%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           +C+   P D R YV LGK L +Q +  EAR +Y  G   T   NPYIW  W  LE + GN
Sbjct: 152 RCLALDPADPRAYVVLGKTLVQQKRYDEARQLYQDGCANTGNVNPYIWSAWGWLEARTGN 211

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC-----GGNEYI 116
           + +AR+L+DA+ V D  H  AWH W +LE  QGN  +AR L  +G++ C       N Y+
Sbjct: 212 VERARKLYDAAVVVDGTHACAWHKWGMLEKGQGNFTRARDLWMQGIQRCRRKPQSQNAYL 271

Query: 117 YQTLALLEAKANRYEQARNLFRQATKC--NPKSCASWIAWSQMEMQQENNLAARQLFERA 174
           Y  L  + A+  R  +AR+ F + T+      S A W AW+ +E +Q +    R LF +A
Sbjct: 272 YNALGCMAAQLGRVGEARSWFEEGTRSAEGAASVALWQAWAVLEAKQGDPTVVRYLFRKA 331

Query: 175 VQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANL 234
           + A+P++R+    W ++E   G       LL+ G  +NP DP L Q+ AL+E +      
Sbjct: 332 LGANPRSRYVHLAWALWERRQGNPQHCLALLRRGCELNPTDPALYQAWALVEKQAGRIER 391

Query: 235 ARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWG 294
           AR+LF +    DP    +W A+G ME ++GN+D AR+L++  +  D  + S      AWG
Sbjct: 392 ARELFEQGLRADPSDLYMWQAYGVMEAEQGNMDRARQLFQEGVWADPRSPSTVYVFHAWG 451

Query: 295 VLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV 354
            LE + GN+  AR LF++++ ++ +S  TW +W  +E + G   R +E+R    +++ E 
Sbjct: 452 ALEWQAGNVQTARELFKAAVRVDPKSETTWASWIAMESELGEIERVDELRIRQAERQWEF 511

Query: 355 VDDASWVMGFMDIIDPAL 372
           V  A    GF     P L
Sbjct: 512 VVPA----GFTTRPAPGL 525

Involved, directly or indirectly, in the processing of the chloroplast encoded psbB mRNA to its mature form, acting via the 5'-UTR of the psbB mRNA.
Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1 PE=3 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 165/395 (41%), Gaps = 53/395 (13%)

Query: 30  ARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL 89
           ARAI+ +  Q      P  W  +   E +L      R +F+   +    +I  W  +   
Sbjct: 162 ARAIFERWMQWKP--EPQAWNSYLKFEQRLKLFENTRLIFEKYILVH-PYIKTWIKYTKF 218

Query: 90  ELRQGNIKKARQLLAKGLKFCG---GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK 146
           E R GNI+ AR +  + ++F G    +E ++   A  E K    E+AR +++ A    PK
Sbjct: 219 EERLGNIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHVPK 278

Query: 147 SCAS--WIAWSQMEMQQENNLAARQL--------FERAVQASPKNRFAWHVWGIFEANMG 196
           S A   +  ++  E Q  + +    +        +E  ++ + KN   W  +   E   G
Sbjct: 279 SRAKDLFDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEING 338

Query: 197 FIDKGKKLLKIGHAVNP---------RDPVLLQSLALLEYKYST-ANLARKLFRRASEID 246
            I+K +++ +      P         R   L  + AL E   S     AR ++    ++ 
Sbjct: 339 EIEKTREIYERSIGNLPPTNEKKHWKRYIYLWINYALFEELISKDMERARSVYSECIKLI 398

Query: 247 PRHQ----PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGN 302
           P  +     +WI +   E ++ NLD AR +Y +A+  +      ++    +  LE  +GN
Sbjct: 399 PHKEFSFSKIWILYANFEIRQLNLDKARLIYGQAIGRNP----KSKIFDQYIHLEIELGN 454

Query: 303 LSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ----RTEVVDDA 358
               R L+   L I   +   W  +AQLE + G +VRA  I  L  QQ    R EVV   
Sbjct: 455 FDRVRTLYEKYLEIMPDNCDAWCKFAQLETELGETVRARAIFELAIQQPNLDRPEVV--- 511

Query: 359 SWVMGFMDIIDPAL-----DRIKQLLN--LEKSSY 386
                + D ID  +     D +KQL    LEK+++
Sbjct: 512 -----WKDFIDSEIQLKQFDFVKQLYRKLLEKTNH 541

Involved in pre-mRNA splicing.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=clf-1 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 138/310 (44%), Gaps = 20/310 (6%)

Query: 50  QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKF 109
           Q +A LE      G+ R+ F+     ++  ++ W  +A  EL Q    +AR +  + L  
Sbjct: 42  QRFADLEELKEYQGRKRKEFEDYVRRNRVRLSNWLQYAQWELEQKEFARARSVFERALDV 101

Query: 110 CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQ 169
              N  ++      E K      ARNL  +A    P+  + W  +  +     +    RQ
Sbjct: 102 HPNNTQLWIRYVQAEIKNRNINHARNLLDRAVTRLPRVTSLWYQYLYVMEMLGDIPGTRQ 161

Query: 170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY 229
           +F+R ++  P  + AW  +   E   G  D+ +++ +   AV+P +P      A  E +Y
Sbjct: 162 VFDRWMKWQPDEQ-AWSAYIRLEKRYGEFDRAREIFRAFTAVHP-EPRTWLKWAKFEEEY 219

Query: 230 STANLARKLFRRASEI-------DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST 282
            T++  R++F+ A +        D   + ++IA+   E +    + AR +Y+    +D+ 
Sbjct: 220 GTSDTVREVFQTAIQTIAETLGDDAVDERIFIAFARYEARLREYERARAIYK--FGLDNL 277

Query: 283 TESAARCLQA-WGVLEQRVGN--------LSAARRLFRSSLNINSQSYITWMTWAQLEED 333
             S +  L A +   E++ G+        L+  RRL+   +  N+++Y  W  +A+LEE 
Sbjct: 278 PRSKSMTLHAHYTTFEKQFGDKEGVEDVILTKRRRLYEEQVKENAKNYDVWFDFARLEES 337

Query: 334 QGNSVRAEEI 343
            G+  R  E+
Sbjct: 338 GGDVDRTREV 347

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q9HF03|CLF1_CRYNH Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CLF1 PE=3 SV=1

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 12/226 (5%)

Query: 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
           EA  N YE++R++F +A   +P+S   WI ++ ME++  N   AR LF+RA+   P+   
Sbjct: 85  EASQNEYERSRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITLLPRVDA 144

Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR-- 241
            W+ +   E  +  +   +++ +      P D    QS   LE +Y+  + A  ++ R  
Sbjct: 145 LWYKYVYLEELLLNVSGARQIFERWMQWEPNDKA-WQSYIKLEERYNELDRASAIYERWI 203

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI----DSTTESAARCLQAWGVLE 297
           A    P++   W+AW   E   G  D ARE+++ AL      +   E A     A+  +E
Sbjct: 204 ACRPIPKN---WVAWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARME 260

Query: 298 QRVGNLSAARRLFRSSLN--INSQSYITWMTWAQLEEDQGNSVRAE 341
            R+     AR +++ +L     S+S   +  + + E+  G+    E
Sbjct: 261 TRLKEFERARVIYKFALARLPRSKSASLYAQYTKFEKQHGDRAGVE 306

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Cryptococcus neoformans var. grubii (taxid: 178876)

>sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CLF1 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 12/226 (5%)

Query: 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
           EA  N YE++R++F +A   +P+S   WI ++ ME++  N   AR LF+RA+   P+   
Sbjct: 85  EASQNEYERSRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITLLPRVDA 144

Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR-- 241
            W+ +   E  +  +   +++ +      P D    QS   LE +Y+  + A  ++ R  
Sbjct: 145 LWYKYVYLEELLLNVSGARQIFERWMQWEPNDKA-WQSYIKLEERYNELDRASAIYERWI 203

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI----DSTTESAARCLQAWGVLE 297
           A    P++   W+ W   E   G  D ARE+++ AL      +   E A     A+  +E
Sbjct: 204 ACRPIPKN---WVTWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARME 260

Query: 298 QRVGNLSAARRLFRSSLN--INSQSYITWMTWAQLEEDQGNSVRAE 341
            R+     AR +++ +L     S+S   +  + + E+  G+    E
Sbjct: 261 TRLKEFERARVIYKFALARLPRSKSASLYAQYTKFEKQHGDRAGVE 306

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CO11|CLF1_CRYNB Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CLF1 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 12/226 (5%)

Query: 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
           EA  N YE++R++F +A   +P+S   WI ++ ME++  N   AR LF+RA+   P+   
Sbjct: 85  EASQNEYERSRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITLLPRVDA 144

Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR-- 241
            W+ +   E  +  +   +++ +      P D    QS   LE +Y+  + A  ++ R  
Sbjct: 145 LWYKYVYLEELLLNVSGARQIFERWMQWEPNDKA-WQSYIKLEERYNELDRASAIYERWI 203

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI----DSTTESAARCLQAWGVLE 297
           A    P++   W+ W   E   G  D ARE+++ AL      +   E A     A+  +E
Sbjct: 204 ACRPIPKN---WVTWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARME 260

Query: 298 QRVGNLSAARRLFRSSLN--INSQSYITWMTWAQLEEDQGNSVRAE 341
            R+     AR +++ +L     S+S   +  + + E+  G+    E
Sbjct: 261 TRLKEFERARVIYKFALARLPRSKSASLYAQYTKFEKQHGDRAGVE 306

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 131/296 (44%), Gaps = 19/296 (6%)

Query: 63  GKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL 122
           G+ R+ F++       ++  W  +A  EL Q    ++R +  + L        ++     
Sbjct: 55  GRKRKEFESYCQRSGFNLKNWLQYAQWELEQKEYARSRSVFERALNLHANKVTLWIRYVE 114

Query: 123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR 182
            E K+     ARNL  +A    P+    W  +  +E    N    RQ+FER ++  P + 
Sbjct: 115 AELKSRNINFARNLLDRAVTHLPRVDKLWYKYVWVEEMLGNIPGVRQVFERWMEWQP-DE 173

Query: 183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA 242
            AW  +   E   G  D+ +++      V+P +P      +  E +Y T++  R++F RA
Sbjct: 174 AAWSAFIKLEQRYGEYDRAREIFTRFTMVHP-EPRNWIKWSKFEEEYGTSDRVREVFERA 232

Query: 243 SEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL-QAWGV 295
            E   ++      + ++IA+   E K  +LD AR +Y+    +++   S A  L + +  
Sbjct: 233 IEELSKYGDEFVEERLFIAYARYEAKLHDLDRARAIYK--FGLENLPRSKAMLLHKEYTT 290

Query: 296 LEQRVGN--------LSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEI 343
            E++ G+        LS  RR +   +  N ++Y  W  +A+LEE  G+  R  E+
Sbjct: 291 FEKQYGDREGVEDVVLSKRRRHYEDLVRENPKNYDVWFDYARLEEASGDIDRTREV 346

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4

 Score = 76.3 bits (186), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 133/295 (45%), Gaps = 17/295 (5%)

Query: 64  KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123
           + R+ F+ +   ++  I+ W  +A  E     I++AR +  + L     N  ++   A +
Sbjct: 226 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEM 285

Query: 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
           E K  +   ARN++ +A    P+    W  ++ ME    N   ARQ+FER ++  P+ + 
Sbjct: 286 EMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQ- 344

Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
           AWH +  FE     +D+ + + +    V+P D       A  E K++    ARK++ RA 
Sbjct: 345 AWHSYINFELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHAYFAHARKVYERAV 403

Query: 244 EI---DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV 300
           E    +   + +++A+   E  +   +  R +Y+ AL   S  + A    + + + E++ 
Sbjct: 404 EFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS-KQDAQELFKNYTIFEKKF 462

Query: 301 GN--------LSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347
           G+        +S  R  +   +  N  +Y  W  + +L E   +   AE +R +Y
Sbjct: 463 GDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVE---SDAEAEAVREVY 514

Involved in pre-mRNA splicing process.

Homo sapiens (taxid: 9606)

>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 46/264 (17%)

Query: 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
           E +   + +AR++F +A   NP S   WI + + EM+  N   AR L +RAV   P+   
Sbjct: 82  ELEQKEFRRARSIFERALDVNPTSVVLWIRYIESEMRNRNINHARNLLDRAVTILPRVDK 141

Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
            W+ +   E  +G I   +++ +   +  P D     +   LE +Y+    AR +F+R +
Sbjct: 142 FWYKYVYMEETLGNIQGTRQVFERWMSWEP-DEGAWSAYIKLEKRYNEFERARAIFQRFT 200

Query: 244 EIDPRHQPVWIAWGWMEWKEGNLDTAREL------------------------------Y 273
            + P  +  WI W   E + G  D  RE+                              Y
Sbjct: 201 IVHPEPRN-WIKWARFEEEYGTSDLVREVYGMAIETLGEDFMDEKLFIAYAKFEAKLKEY 259

Query: 274 ERALSI-----DSTTESAARCL-QAWGVLEQRVGN--------LSAARRLFRSSLNINSQ 319
           ERA +I     D    S A  L +A+   E++ G+        LS  R  +   L  N +
Sbjct: 260 ERARAIYKYALDRLPRSKAMALHKAYTTFEKQFGDREGVEDVILSKRRVQYEEQLKENPR 319

Query: 320 SYITWMTWAQLEEDQGNSVRAEEI 343
           +Y  W  +A+LEE  G+  R  +I
Sbjct: 320 NYDVWFDFARLEETSGDPDRVRDI 343

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 133/295 (45%), Gaps = 17/295 (5%)

Query: 64  KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123
           + R+ F+ +   ++  I+ W  +A  E     I++AR +  + L     N  ++   A +
Sbjct: 65  RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEM 124

Query: 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
           E K  +   ARN++ +A    P+    W  ++ ME    N   ARQ+FER ++  P+ + 
Sbjct: 125 EMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQ- 183

Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
           AWH +  FE     +++ + + +    V+P     ++  A  E K++    ARK++ RA 
Sbjct: 184 AWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIK-YARFEEKHAYFAHARKVYERAV 242

Query: 244 EI---DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV 300
           E    +   + +++A+   E  +   +  R +Y+ AL   S  E A    + + + E++ 
Sbjct: 243 EFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQE-AQELFKNYTIFEKKF 301

Query: 301 GN--------LSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347
           G+        +S  R  +   +  N  +Y  W  + +L E       A+ +R +Y
Sbjct: 302 GDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAE---ADTVREVY 353

May be involved in pre-mRNA splicing process.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
225431952	651	PREDICTED: psbB mRNA maturation factor M	0.987	0.721	0.771	0.0
255556376	648	pre-mRNA splicing factor, putative [Rici	0.960	0.705	0.767	0.0
147790353	629	hypothetical protein VITISV_011791 [Viti	0.926	0.701	0.795	0.0
224111978	546	predicted protein [Populus trichocarpa]	0.932	0.813	0.757	0.0
449433439	636	PREDICTED: psbB mRNA maturation factor M	0.955	0.715	0.736	0.0
449516902	636	PREDICTED: psbB mRNA maturation factor M	0.955	0.715	0.734	0.0
15228944	652	protein high chlorophyll fluorescent 107	0.934	0.682	0.746	0.0
334185406	618	protein high chlorophyll fluorescent 107	0.934	0.720	0.746	0.0
297834606	652	HCF107 [Arabidopsis lyrata subsp. lyrata	0.934	0.682	0.748	0.0
7670028	744	unnamed protein product [Arabidopsis tha	0.934	0.598	0.726	0.0

>gi|225431952|ref|XP_002272572.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic [Vitis vinifera] gi|296083248|emb|CBI22884.3| unnamed protein product [Vitis vinifera]

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/476 (77%), Positives = 411/476 (86%), Gaps = 6/476 (1%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           KCI YWPEDGRPYVALGK+LSKQSK +EARA+Y KG QATQGENPYIWQCWAVLENK+GN
Sbjct: 170 KCIYYWPEDGRPYVALGKILSKQSKTSEARAVYEKGCQATQGENPYIWQCWAVLENKMGN 229

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           I +AR+LFDA+TVADK H+AAWHGWAVLEL+QGNIKKAR LLAKGLK+ GGNEYIYQTLA
Sbjct: 230 IRRARDLFDAATVADKRHVAAWHGWAVLELKQGNIKKARHLLAKGLKYGGGNEYIYQTLA 289

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
           LLEAKANR+EQAR LF+QATKCNPKSCASW+AW+Q+EMQQENN  ARQLFE+AVQASPKN
Sbjct: 290 LLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQLEMQQENNHTARQLFEKAVQASPKN 349

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
           RFAWHVWG+FEAN+G  D G+KLLKIGHAVNPRDPVLLQSLALLEYKYSTANL+R LFRR
Sbjct: 350 RFAWHVWGVFEANLGNADVGRKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLSRVLFRR 409

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           ASE+DPRHQPVWIAWGWMEWKEGN+ TARE+Y+RALSIDSTTESAARCLQAWGVLE+R G
Sbjct: 410 ASELDPRHQPVWIAWGWMEWKEGNIATAREMYQRALSIDSTTESAARCLQAWGVLEERAG 469

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 361
           NLSAARRLFRSSLNINSQSYITWMTWA  EE+QGN+VRAEEIR+LYFQQRTEVVDDASWV
Sbjct: 470 NLSAARRLFRSSLNINSQSYITWMTWASFEENQGNAVRAEEIRDLYFQQRTEVVDDASWV 529

Query: 362 MGFMDIIDPALDRIKQLLNLEKSSY---KEPSAYSPGDNESTDDEASVSRYSGLYVGNDL 418
           MGF+DIIDPALD IK+LLNL+++SY    + S   PG NE +         SG     D 
Sbjct: 530 MGFLDIIDPALDSIKRLLNLDQNSYYRIPDSSRNIPGANEDS-SGPGPGPSSGNPDSKDT 588

Query: 419 ESASGFDLDDFIRNKLNLDPDQLDVLLEKTSNPSVVRKVNYPRRRIFRPEDKTAAT 474
            S +GF+LD FIR KL+LDP  LDV ++ T   +V R+V  P RRI R E+  + T
Sbjct: 589 ASENGFNLDAFIREKLSLDPSNLDVQMQ-THETTVPRRVKLP-RRIKRLENTQSRT 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556376|ref|XP_002519222.1| pre-mRNA splicing factor, putative [Ricinus communis] gi|223541537|gb|EEF43086.1| pre-mRNA splicing factor, putative [Ricinus communis]

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/465 (76%), Positives = 405/465 (87%), Gaps = 8/465 (1%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           KCI+YW EDGR YVALGK+L+KQSK AEARA+Y KG QATQGEN YIWQCWAVLENK+GN
Sbjct: 181 KCINYWSEDGRAYVALGKILTKQSKTAEARAVYEKGCQATQGENAYIWQCWAVLENKMGN 240

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           I +ARELFDA+TVADK HIAAWHGWAVLEL+QGNIKKARQLLAKG+KFCGGNEYIYQTLA
Sbjct: 241 IRRARELFDAATVADKRHIAAWHGWAVLELKQGNIKKARQLLAKGIKFCGGNEYIYQTLA 300

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
           LLEAKANRYEQAR LFRQATKCNPKSCASW+AW+Q+E+QQENNL AR+LF++AVQASPKN
Sbjct: 301 LLEAKANRYEQARYLFRQATKCNPKSCASWLAWAQVEVQQENNLTARELFQKAVQASPKN 360

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
           RFAWHVWG+FEAN+G I+  +KLLKIGH +NPRDPVLLQSLALLEYK+STANLAR LFRR
Sbjct: 361 RFAWHVWGVFEANIGNIEMARKLLKIGHTLNPRDPVLLQSLALLEYKHSTANLARVLFRR 420

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           ASE+DP+HQPVWIAWGWMEWKEGN+  ARELY+RALSIDS++ESAA+CLQAWGVLEQRVG
Sbjct: 421 ASELDPKHQPVWIAWGWMEWKEGNISAARELYQRALSIDSSSESAAKCLQAWGVLEQRVG 480

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 361
           NLS ARRLFRSSLNINSQSYITWMTWAQ EEDQGNSVRAEEIRNLYFQQRTEVVDDASWV
Sbjct: 481 NLSLARRLFRSSLNINSQSYITWMTWAQFEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 540

Query: 362 MGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESA 421
           MG +DIIDPALD IK+LL  +++  +E S+  PG       EA+ +  S    GN   S 
Sbjct: 541 MGVLDIIDPALDSIKRLLKFDQNKEQESSSSKPGKY-----EANANVPSSNADGNLTRSR 595

Query: 422 SGFDLDDFIRNKLNLDPDQLDVLLEKTSNPSVVRKVNYPRRRIFR 466
           SGFDLD FI+ +L+LD  ++DV LE + NP+  R     +RR++R
Sbjct: 596 SGFDLDSFIKERLSLDQSKVDVQLETSGNPTPWR---VSQRRLWR 637

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790353|emb|CAN76674.1| hypothetical protein VITISV_011791 [Vitis vinifera]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/445 (79%), Positives = 394/445 (88%), Gaps = 4/445 (0%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           KCI YWPEDGRPYVALGK+LSKQSK +EARA+Y KG QATQGENPYIWQCWAVLENK+GN
Sbjct: 170 KCIYYWPEDGRPYVALGKILSKQSKTSEARAVYEKGCQATQGENPYIWQCWAVLENKMGN 229

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           I +AR+LFDA+TVADK H+AAWHGWAVLEL+QGNIKKAR LLAKGLK+ GGNEYIYQTL 
Sbjct: 230 IRRARDLFDAATVADKRHVAAWHGWAVLELKQGNIKKARHLLAKGLKYGGGNEYIYQTLX 289

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
           LLEAKANR+EQAR LF+QATKCNPKSCASW+AW+Q+EMQQENN  ARQLFE+AVQASPKN
Sbjct: 290 LLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQLEMQQENNHTARQLFEKAVQASPKN 349

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
           RFAWHVWG+FEAN+G  D G+KLLKIGHAVNPRDPVLLQSLALLEYKYSTANL+R LFRR
Sbjct: 350 RFAWHVWGVFEANLGNADVGRKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLSRVLFRR 409

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           ASE+DPRHQPVWIAWGWMEWKEGN+ TARE+Y+RALSIDSTTESAARCLQAWGVLE+R G
Sbjct: 410 ASELDPRHQPVWIAWGWMEWKEGNIATAREMYQRALSIDSTTESAARCLQAWGVLEERAG 469

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 361
           NLSAARRLFRSSLNINSQSYITWMTWA  EE+QGN+VRAEEIR+LYFQQRTEVVDDASWV
Sbjct: 470 NLSAARRLFRSSLNINSQSYITWMTWASFEENQGNAVRAEEIRDLYFQQRTEVVDDASWV 529

Query: 362 MGFMDIIDPALDRIKQLLNLEKSSY---KEPSAYSPGDNESTDDEASVSRYSGLYVGNDL 418
           MGF+DIIDPALD IK+LLNL+++SY    + S   PG +E +         SG    ND 
Sbjct: 530 MGFLDIIDPALDSIKRLLNLDQNSYYRIPDSSRNIPGADEDS-SGPGPGPSSGNPDSNDT 588

Query: 419 ESASGFDLDDFIRNKLNLDPDQLDV 443
            S +GF+LD FIR KL+LDP  LD+
Sbjct: 589 ASENGFNLDAFIREKLSLDPSNLDM 613

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111978|ref|XP_002316041.1| predicted protein [Populus trichocarpa] gi|222865081|gb|EEF02212.1| predicted protein [Populus trichocarpa]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/450 (75%), Positives = 394/450 (87%), Gaps = 6/450 (1%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           KCI YWPEDG+PYVALG++L KQSK   ARA+Y KG QATQGENPY+WQCWAVLENK+GN
Sbjct: 97  KCISYWPEDGKPYVALGRILGKQSKTEAARAVYEKGCQATQGENPYVWQCWAVLENKMGN 156

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           I +ARELFDA+TVADK H+AAWHGWA+LEL+QGN+KKARQLLAKGLKFCGGNEY+YQTLA
Sbjct: 157 IRRARELFDAATVADKRHVAAWHGWAILELKQGNVKKARQLLAKGLKFCGGNEYVYQTLA 216

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
           LLEAKANRY+QA+ LFRQATKCNPKSCASW+AW+Q+E QQENNL AR+LFE+AVQASPKN
Sbjct: 217 LLEAKANRYKQAQYLFRQATKCNPKSCASWLAWAQLETQQENNLVARKLFEKAVQASPKN 276

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
           RFAWHVWG+FEAN+G I+K +KLL IGHA+NPRD VLLQSLALLEY++STANLAR LFR+
Sbjct: 277 RFAWHVWGVFEANIGNIEKARKLLTIGHALNPRDAVLLQSLALLEYRHSTANLARVLFRK 336

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           ASE+DPRHQPVWIAWGWMEWKEGN+ TARELY++ALSI++TTESAARCLQAWGVLEQR G
Sbjct: 337 ASELDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINTTTESAARCLQAWGVLEQRAG 396

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 361
           NLSAARRLFRSSLNINSQSY+TWMTWAQLE+DQGNSVRAEEIRNLYFQQRTEVVDD  WV
Sbjct: 397 NLSAARRLFRSSLNINSQSYVTWMTWAQLEDDQGNSVRAEEIRNLYFQQRTEVVDDVPWV 456

Query: 362 MGFMDIIDPALDRIKQLLNLEKSSYKEPSA----YSPGDNESTDDEASVSRYSGLYVGND 417
            GF+DI+DPA+D IK+LLN+++  YK+        S G  +  DD ++ +  S  + GND
Sbjct: 457 AGFLDILDPAVDSIKKLLNMDQDPYKKAQEALRNISRGKEKGVDDNSAGNPSSNSF-GND 515

Query: 418 LES-ASGFDLDDFIRNKLNLDPDQLDVLLE 446
            E   SG DLD FI+ +L+LD  + DV LE
Sbjct: 516 KEGRGSGLDLDSFIKERLSLDATKFDVNLE 545

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433439|ref|XP_004134505.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Cucumis sativus]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/463 (73%), Positives = 397/463 (85%), Gaps = 8/463 (1%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           KCI+ WPEDGR YVALGK+L KQ K AEA+A+Y +G QATQGEN YIWQCWAVLE+++GN
Sbjct: 161 KCINKWPEDGRAYVALGKMLGKQMKAAEAKAVYERGCQATQGENSYIWQCWAVLESRMGN 220

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           I KARELFDA+TVA+K HIAAWHGWAVLEL+QGNIKKAR LLAKGLK+CGGNEYIYQTLA
Sbjct: 221 IRKARELFDAATVANKKHIAAWHGWAVLELKQGNIKKARNLLAKGLKYCGGNEYIYQTLA 280

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
           LLEAK+NRYEQAR LF+QATKCNPKSCASW+AW+Q+EMQ ENNL AR+LFE+A+QASPKN
Sbjct: 281 LLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQLENNLLARELFEKAIQASPKN 340

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
           RFAWH+WG+FEAN G I+KG KLLKIGH +NPRDPVLLQSL LLEYK S+A+LAR LFRR
Sbjct: 341 RFAWHIWGLFEANTGNIEKGMKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLARVLFRR 400

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           ASE+DP+HQPVWIAWGWMEWKEGN+  ARELY+RAL IDS +ESAARCLQAWGVLEQRVG
Sbjct: 401 ASELDPKHQPVWIAWGWMEWKEGNIVKARELYQRALLIDSDSESAARCLQAWGVLEQRVG 460

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 361
           NLSAARRL+RSSLNINSQSY+TWMTWA LEEDQGN++RAEEIRNLYFQQRTEVVDDASWV
Sbjct: 461 NLSAARRLYRSSLNINSQSYVTWMTWAALEEDQGNAIRAEEIRNLYFQQRTEVVDDASWV 520

Query: 362 MGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESA 421
           MGF+D+IDPALD IK+LL LE+  +   S  + G   +T  + S +  S   VG   ES 
Sbjct: 521 MGFLDVIDPALDSIKRLLKLEQDPFT-ASRTADGGPRNTSIDDSAASSSSNNVG---ESE 576

Query: 422 SGFDLDDFIRNKLNLDPDQLDVLLEKTSNPSVVRKVNYPRRRI 464
           +GFDLD FI  KL++D  +L++ +E T+ P   ++  Y RR++
Sbjct: 577 TGFDLDAFIMKKLSIDTSKLEIQME-TTRP---KRFKYQRRQL 615

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516902|ref|XP_004165485.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Cucumis sativus]

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/463 (73%), Positives = 396/463 (85%), Gaps = 8/463 (1%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           KCI+ WPEDGR YVALGK+L KQ K AEA+A+Y +G QATQGEN YIWQCWAVLE+++GN
Sbjct: 161 KCINKWPEDGRAYVALGKMLGKQMKAAEAKAVYERGCQATQGENSYIWQCWAVLESRMGN 220

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           I KARELFDA+TVA+K HIAAWHGWAVLEL+QGNIKKAR LLAKGLK+CGGNEYIYQTLA
Sbjct: 221 IRKARELFDAATVANKKHIAAWHGWAVLELKQGNIKKARNLLAKGLKYCGGNEYIYQTLA 280

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
           LLEAK+NRYEQAR LF+QATKCNPKSCASW+AW+Q+EMQ ENNL AR+LFE+A+QASPKN
Sbjct: 281 LLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQLENNLLARELFEKAIQASPKN 340

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
           RFAWH+WG+FEAN G I+KG KLLKIGH +NPRDPVLLQSL LLEYK S+A+LAR LFRR
Sbjct: 341 RFAWHIWGLFEANTGNIEKGMKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLARVLFRR 400

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           ASE+DP+HQPVWIAWGWMEWKEGN+  ARELY+RAL IDS +ESAARCLQAWGVLEQR G
Sbjct: 401 ASELDPKHQPVWIAWGWMEWKEGNIVKARELYQRALLIDSDSESAARCLQAWGVLEQRAG 460

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 361
           NLSAARRL+RSSLNINSQSY+TWMTWA LEEDQGN++RAEEIRNLYFQQRTEVVDDASWV
Sbjct: 461 NLSAARRLYRSSLNINSQSYVTWMTWAALEEDQGNAIRAEEIRNLYFQQRTEVVDDASWV 520

Query: 362 MGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESA 421
           MGF+D+IDPALD IK+LL LE+  +   S  + G   +T  + S +  S   VG   ES 
Sbjct: 521 MGFLDVIDPALDSIKRLLKLEQDPFT-ASRTADGGPRNTSIDDSAASSSSNNVG---ESE 576

Query: 422 SGFDLDDFIRNKLNLDPDQLDVLLEKTSNPSVVRKVNYPRRRI 464
           +GFDLD FI  KL++D  +L++ +E T+ P   ++  Y RR++
Sbjct: 577 TGFDLDAFIMKKLSIDTSKLEIQME-TTRP---KRFKYQRRQL 615

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228944|ref|NP_188329.1| protein high chlorophyll fluorescent 107 [Arabidopsis thaliana] gi|20260426|gb|AAM13111.1| unknown protein [Arabidopsis thaliana] gi|30725484|gb|AAP37764.1| At3g17040 [Arabidopsis thaliana] gi|332642376|gb|AEE75897.1| protein high chlorophyll fluorescent 107 [Arabidopsis thaliana]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/445 (74%), Positives = 384/445 (86%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           KCI YWPEDGRPYVALGK+LSKQSK+AEAR +Y KG Q+TQGEN YIWQCWAVLEN+LGN
Sbjct: 193 KCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLENRLGN 252

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           + +ARELFDA+TVADK H+AAWHGWA LE++QGNI KAR LLAKGLKFCG NEYIYQTLA
Sbjct: 253 VRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLA 312

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
           LLEAKA RYEQAR LF+QAT CN +SCASW+AW+Q+E+QQE   AAR+LFE+AVQASPKN
Sbjct: 313 LLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKN 372

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
           RFAWHVWG+FEA +G +++G+KLLKIGHA+NPRDPVLLQSL LLEYK+S+ANLAR L RR
Sbjct: 373 RFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSANLARALLRR 432

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           ASE+DPRHQPVWIAWGWMEWKEGN  TARELY+RALSID+ TESA+RCLQAWGVLEQR G
Sbjct: 433 ASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESASRCLQAWGVLEQRAG 492

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 361
           NLSAARRLFRSSLNINSQSY+TWMTWAQLEEDQG++ RAEEIRNLYFQQRTEVVDDASWV
Sbjct: 493 NLSAARRLFRSSLNINSQSYVTWMTWAQLEEDQGDTERAEEIRNLYFQQRTEVVDDASWV 552

Query: 362 MGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESA 421
            GF+DIIDPALD +K+LLN  +++       +  +   T D  S  +        D+E+ 
Sbjct: 553 TGFLDIIDPALDTVKRLLNFGQNNDNNRLTTTLRNMNRTKDSQSNQQPESSAGREDIETG 612

Query: 422 SGFDLDDFIRNKLNLDPDQLDVLLE 446
           SGF+LD F+R+KL+LDP +LDV L+
Sbjct: 613 SGFNLDVFLRSKLSLDPLKLDVNLD 637

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185406|ref|NP_001189914.1| protein high chlorophyll fluorescent 107 [Arabidopsis thaliana] gi|332642377|gb|AEE75898.1| protein high chlorophyll fluorescent 107 [Arabidopsis thaliana]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/445 (74%), Positives = 384/445 (86%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           KCI YWPEDGRPYVALGK+LSKQSK+AEAR +Y KG Q+TQGEN YIWQCWAVLEN+LGN
Sbjct: 159 KCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLENRLGN 218

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           + +ARELFDA+TVADK H+AAWHGWA LE++QGNI KAR LLAKGLKFCG NEYIYQTLA
Sbjct: 219 VRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLA 278

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
           LLEAKA RYEQAR LF+QAT CN +SCASW+AW+Q+E+QQE   AAR+LFE+AVQASPKN
Sbjct: 279 LLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKN 338

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
           RFAWHVWG+FEA +G +++G+KLLKIGHA+NPRDPVLLQSL LLEYK+S+ANLAR L RR
Sbjct: 339 RFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSANLARALLRR 398

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           ASE+DPRHQPVWIAWGWMEWKEGN  TARELY+RALSID+ TESA+RCLQAWGVLEQR G
Sbjct: 399 ASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESASRCLQAWGVLEQRAG 458

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 361
           NLSAARRLFRSSLNINSQSY+TWMTWAQLEEDQG++ RAEEIRNLYFQQRTEVVDDASWV
Sbjct: 459 NLSAARRLFRSSLNINSQSYVTWMTWAQLEEDQGDTERAEEIRNLYFQQRTEVVDDASWV 518

Query: 362 MGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESA 421
            GF+DIIDPALD +K+LLN  +++       +  +   T D  S  +        D+E+ 
Sbjct: 519 TGFLDIIDPALDTVKRLLNFGQNNDNNRLTTTLRNMNRTKDSQSNQQPESSAGREDIETG 578

Query: 422 SGFDLDDFIRNKLNLDPDQLDVLLE 446
           SGF+LD F+R+KL+LDP +LDV L+
Sbjct: 579 SGFNLDVFLRSKLSLDPLKLDVNLD 603

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834606|ref|XP_002885185.1| HCF107 [Arabidopsis lyrata subsp. lyrata] gi|297331025|gb|EFH61444.1| HCF107 [Arabidopsis lyrata subsp. lyrata]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/445 (74%), Positives = 379/445 (85%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           KCI YWPEDGRPYVALGK+L KQSK+AEAR +Y KG Q+TQGEN YIWQCWAVLEN+LGN
Sbjct: 193 KCIAYWPEDGRPYVALGKILIKQSKLAEARIVYEKGCQSTQGENAYIWQCWAVLENRLGN 252

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           + +ARELFDA+TVADK H+AAWHGWA LE++QGNI KAR LLAKGLKFCG NEYIYQTLA
Sbjct: 253 VRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLA 312

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
           LLEAKA RYEQAR LF+QAT CN KSCASW+AW+Q+E+QQE   AAR+LFE+AVQASPKN
Sbjct: 313 LLEAKAARYEQARYLFKQATICNSKSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKN 372

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
           RFAWHVWG+FEA +G +++G+KLLKIGHA+NPRDPVLLQSL LLEYK+S+ANLAR L RR
Sbjct: 373 RFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSANLARALLRR 432

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           ASE+DPRHQPVWIAWGWMEWKEGN  TARELY RALSID+ TESAARCLQAWGVLEQ  G
Sbjct: 433 ASEVDPRHQPVWIAWGWMEWKEGNTTTARELYLRALSIDANTESAARCLQAWGVLEQSAG 492

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 361
           NLSAARRLFRSSLNINSQSY+TWMTWAQLEEDQG+S RAEEIRNLYFQQRTEVVDDASWV
Sbjct: 493 NLSAARRLFRSSLNINSQSYVTWMTWAQLEEDQGDSERAEEIRNLYFQQRTEVVDDASWV 552

Query: 362 MGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESA 421
            GF+DIIDPALD +K+LLN  +++       +  +   T D  S  +        D E+ 
Sbjct: 553 TGFLDIIDPALDTVKRLLNFGQNNDNNRLTTTLRNMNGTKDSQSNQQPESSVGREDTETG 612

Query: 422 SGFDLDDFIRNKLNLDPDQLDVLLE 446
           SGF+LD F+R KL+LDP +LDV L+
Sbjct: 613 SGFNLDAFLREKLSLDPTKLDVNLD 637

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7670028|dbj|BAA94982.1| unnamed protein product [Arabidopsis thaliana]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/457 (72%), Positives = 384/457 (84%), Gaps = 12/457 (2%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           KCI YWPEDGRPYVALGK+LSKQSK+AEAR +Y KG Q+TQGEN YIWQCWAVLEN+LGN
Sbjct: 193 KCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLENRLGN 252

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           + +ARELFDA+TVADK H+AAWHGWA LE++QGNI KAR LLAKGLKFCG NEYIYQTLA
Sbjct: 253 VRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLA 312

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
           LLEAKA RYEQAR LF+QAT CN +SCASW+AW+Q+E+QQE   AAR+LFE+AVQASPKN
Sbjct: 313 LLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKN 372

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
           RFAWHVWG+FEA +G +++G+KLLKIGHA+NPRDPVLLQSL LLEYK+S+ANLAR L RR
Sbjct: 373 RFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSANLARALLRR 432

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           ASE+DPRHQPVWIAWGWMEWKEGN  TARELY+RALSID+ TESA+RCLQAWGVLEQR G
Sbjct: 433 ASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESASRCLQAWGVLEQRAG 492

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ------------ 349
           NLSAARRLFRSSLNINSQSY+TWMTWAQLEEDQG++ RAEEIRNLYFQ            
Sbjct: 493 NLSAARRLFRSSLNINSQSYVTWMTWAQLEEDQGDTERAEEIRNLYFQQSLYINLYFIAK 552

Query: 350 QRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRY 409
           QRTEVVDDASWV GF+DIIDPALD +K+LLN  +++       +  +   T D  S  + 
Sbjct: 553 QRTEVVDDASWVTGFLDIIDPALDTVKRLLNFGQNNDNNRLTTTLRNMNRTKDSQSNQQP 612

Query: 410 SGLYVGNDLESASGFDLDDFIRNKLNLDPDQLDVLLE 446
                  D+E+ SGF+LD F+R+KL+LDP +LDV L+
Sbjct: 613 ESSAGREDIETGSGFNLDVFLRSKLSLDPLKLDVNLD 649

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
TAIR|locus:2086132	652	HCF107 "high chlorophyll fluor	0.934	0.682	0.746	3.2e-184
TAIR|locus:2128751	1029	EMB2770 "EMBRYO DEFECTIVE 2770	0.556	0.257	0.243	1.1e-13
UNIPROTKB|J9P5Z1	728	CRNKL1 "Uncharacterized protei	0.584	0.381	0.240	1e-12
UNIPROTKB|Q5JY65	836	CRNKL1 "Crooked neck-like prot	0.584	0.332	0.237	1.6e-12
UNIPROTKB|Q9BZJ0	848	CRNKL1 "Crooked neck-like prot	0.584	0.327	0.237	1.7e-12
ASPGD|ASPL0000053069	673	AN1259 [Emericella nidulans (t	0.611	0.432	0.248	1.9e-12
FB|FBgn0000377	702	crn "crooked neck" [Drosophila	0.584	0.396	0.240	3.4e-12
MGI|MGI:1914127	690	Crnkl1 "Crn, crooked neck-like	0.584	0.402	0.230	5.6e-12
RGD|620507	690	Crnkl1 "crooked neck pre-mRNA	0.584	0.402	0.230	5.6e-12
UNIPROTKB|F1MZT2	781	CRNKL1 "Uncharacterized protei	0.584	0.355	0.240	8.7e-12

TAIR|locus:2086132 HCF107 "high chlorophyll fluorescent 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 1787 (634.1 bits), Expect = 3.2e-184, P = 3.2e-184
 Identities = 332/445 (74%), Positives = 384/445 (86%)

Query:     2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
             KCI YWPEDGRPYVALGK+LSKQSK+AEAR +Y KG Q+TQGEN YIWQCWAVLEN+LGN
Sbjct:   193 KCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLENRLGN 252

Query:    62 IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
             + +ARELFDA+TVADK H+AAWHGWA LE++QGNI KAR LLAKGLKFCG NEYIYQTLA
Sbjct:   253 VRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLA 312

Query:   122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
             LLEAKA RYEQAR LF+QAT CN +SCASW+AW+Q+E+QQE   AAR+LFE+AVQASPKN
Sbjct:   313 LLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKN 372

Query:   182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
             RFAWHVWG+FEA +G +++G+KLLKIGHA+NPRDPVLLQSL LLEYK+S+ANLAR L RR
Sbjct:   373 RFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSANLARALLRR 432

Query:   242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
             ASE+DPRHQPVWIAWGWMEWKEGN  TARELY+RALSID+ TESA+RCLQAWGVLEQR G
Sbjct:   433 ASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESASRCLQAWGVLEQRAG 492

Query:   302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 361
             NLSAARRLFRSSLNINSQSY+TWMTWAQLEEDQG++ RAEEIRNLYFQQRTEVVDDASWV
Sbjct:   493 NLSAARRLFRSSLNINSQSYVTWMTWAQLEEDQGDTERAEEIRNLYFQQRTEVVDDASWV 552

Query:   362 MGFMDIIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESA 421
              GF+DIIDPALD +K+LLN  +++       +  +   T D  S  +        D+E+ 
Sbjct:   553 TGFLDIIDPALDTVKRLLNFGQNNDNNRLTTTLRNMNRTKDSQSNQQPESSAGREDIETG 612

Query:   422 SGFDLDDFIRNKLNLDPDQLDVLLE 446
             SGF+LD F+R+KL+LDP +LDV L+
Sbjct:   613 SGFNLDVFLRSKLSLDPLKLDVNLD 637

GO:0005634 "nucleus" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA;IMP

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006417 "regulation of translation" evidence=RCA;IMP

GO:0009657 "plastid organization" evidence=RCA;IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2128751 EMB2770 "EMBRYO DEFECTIVE 2770" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 67/275 (24%), Positives = 122/275 (44%)

Query:     8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARE 67
             P     ++A  K+  +  +   AR + AK  +  +G    +W   A++E +LGN+ + R 
Sbjct:   724 PNSEEIWLAAFKLEFENKEPERARMLLAKARE--RGGTERVWMKSAIVERELGNVEEERR 781

Query:    68 LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127
             L +            W     LE R  ++++AR+    GLK C     ++ +LA LE K 
Sbjct:   782 LLNEGLKQFPTFFKLWLMLGQLEERFKHLEQARKAYDTGLKHCPHCIPLWLSLADLEEKV 841

Query:   128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHV 187
             N   +AR +   A K NP     W+A  + E++ +N   A  L  +A+Q  PK+   W  
Sbjct:   842 NGLNKARAILTTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQDCPKSGILW-- 899

Query:   188 WGIFEANMGFIDKGKKLLKIGHAVNP--RDPVLLQSLALLEYKYSTANLARKLFRRASEI 245
                  A++    + ++  K   A+    RDP +  ++A L ++      AR  F RA  +
Sbjct:   900 ----AADIEMAPRPRRKTKSIDAMKKCDRDPHVTIAVAKLFWQDKKVEKARAWFERAVTV 955

Query:   246 DPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
              P     W  +   E + G+ +  +E+  + ++ +
Sbjct:   956 GPDIGDFWALFYKFELQHGSDEDRKEVVAKCVACE 990

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006396 "RNA processing" evidence=IEA

GO:0009409 "response to cold" evidence=IMP

UNIPROTKB|J9P5Z1 CRNKL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 201 (75.8 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 71/295 (24%), Positives = 134/295 (45%)

Query:    64 KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123
             + R+ F+ +   ++  I+ W  +A  E     I++AR +  + L     N  ++   A +
Sbjct:   106 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEM 165

Query:   124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
             E K  +   ARN++ +A    P+    W  ++ ME    N   ARQ+FER ++  P+ + 
Sbjct:   166 EMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQ- 224

Query:   184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
             AWH +  FE     +D+ + + +    V+P D       A  E K+     ARK++ RA 
Sbjct:   225 AWHSYINFELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHGYFAHARKVYERAV 283

Query:   244 EI-DPRH--QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV 300
             E     H  + +++A+   E  +   +  R +Y+ AL   S  E A    + + + E++ 
Sbjct:   284 EFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQE-AQELFKNYTIFEKKF 342

Query:   301 GN------LSAARRLFR--SSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347
             G+      +  ++R F+    +  N  +Y  W  + +L E   +   AE +R +Y
Sbjct:   343 GDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVE---SDAEAETVREVY 394

GO:0006396 "RNA processing" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q5JY65 CRNKL1 "Crooked neck-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 70/295 (23%), Positives = 135/295 (45%)

Query:    64 KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123
             + R+ F+ +   ++  I+ W  +A  E     I++AR +  + L     N  ++   A +
Sbjct:   214 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEM 273

Query:   124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
             E K  +   ARN++ +A    P+    W  ++ ME    N   ARQ+FER ++  P+ + 
Sbjct:   274 EMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQ- 332

Query:   184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
             AWH +  FE     +D+ + + +    V+P D       A  E K++    ARK++ RA 
Sbjct:   333 AWHSYINFELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHAYFAHARKVYERAV 391

Query:   244 EI-DPRH--QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV 300
             E     H  + +++A+   E  +   +  R +Y+ AL   S  + A    + + + E++ 
Sbjct:   392 EFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISK-QDAQELFKNYTIFEKKF 450

Query:   301 GN------LSAARRLFR--SSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347
             G+      +  ++R F+    +  N  +Y  W  + +L E   +   AE +R +Y
Sbjct:   451 GDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVE---SDAEAEAVREVY 502

GO:0005622 "intracellular" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|Q9BZJ0 CRNKL1 "Crooked neck-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 70/295 (23%), Positives = 135/295 (45%)

Query:    64 KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123
             + R+ F+ +   ++  I+ W  +A  E     I++AR +  + L     N  ++   A +
Sbjct:   226 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEM 285

Query:   124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
             E K  +   ARN++ +A    P+    W  ++ ME    N   ARQ+FER ++  P+ + 
Sbjct:   286 EMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQ- 344

Query:   184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
             AWH +  FE     +D+ + + +    V+P D       A  E K++    ARK++ RA 
Sbjct:   345 AWHSYINFELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHAYFAHARKVYERAV 403

Query:   244 EI-DPRH--QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV 300
             E     H  + +++A+   E  +   +  R +Y+ AL   S  + A    + + + E++ 
Sbjct:   404 EFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISK-QDAQELFKNYTIFEKKF 462

Query:   301 GN------LSAARRLFR--SSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347
             G+      +  ++R F+    +  N  +Y  W  + +L E   +   AE +R +Y
Sbjct:   463 GDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVE---SDAEAEAVREVY 514

GO:0005737 "cytoplasm" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

ASPGD|ASPL0000053069 AN1259 [Emericella nidulans (taxid:162425)]

 Score = 198 (74.8 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 77/310 (24%), Positives = 138/310 (44%)

Query:    50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKF 109
             Q +A LE      G+ R+ F+     ++ ++  W  +A  EL Q   ++AR +  + L  
Sbjct:    42 QRFADLEELHEYQGRKRKEFEDYVRRNRINMNNWMRYAAWELEQKEFRRARSIFERALDV 101

Query:   110 CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQ 169
                +  ++      E +      ARNL  +A    P+    W  +  ME    N    RQ
Sbjct:   102 DSTSVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQ 161

Query:   170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY 229
             +FER +   P +  AW  +   E      ++ + + +    V+P +P      A  E +Y
Sbjct:   162 VFERWMSWEP-DEGAWSAYIKLEKRYNEFERARAIFQRFTIVHP-EPRNWIKWARFEEEY 219

Query:   230 STANLARKLFRRASEI---DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286
              T++L R+++  A E    D   + ++IA+   E K    + AR +Y+ AL  D    S 
Sbjct:   220 GTSDLVREVYGLAVETLGEDFMDEKLFIAYARFETKLKEYERARAIYKYAL--DRLPRSK 277

Query:   287 ARCL-QAWGVLEQRVGN-------LSAARRL-FRSSLNINSQSYITWMTWAQLEEDQGNS 337
             +  L +A+   E++ G+       + A RR+ +   L  N ++Y  W  +A+LEE  G+ 
Sbjct:   278 SITLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNYDVWFDFARLEEQSGDP 337

Query:   338 VRAEEIRNLY 347
                E +R++Y
Sbjct:   338 ---ERVRDVY 344

GO:0003674 "molecular_function" evidence=ND

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

FB|FBgn0000377 crn "crooked neck" [Drosophila melanogaster (taxid:7227)]

 Score = 196 (74.1 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 71/295 (24%), Positives = 135/295 (45%)

Query:    64 KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123
             + R+ F+ +   ++  ++ W  +A  E +Q  I++AR +  + L     N  ++   A +
Sbjct:    60 RKRKTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEM 119

Query:   124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
             E K  +   ARNL+ +A    P+    W  ++ ME   EN   ARQ+FER ++  P+ + 
Sbjct:   120 EMKNKQVNHARNLWDRAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQ- 178

Query:   184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
             AW  +  FE     ID+ +++ +    V+P D       A  E  +   + +R++F RA 
Sbjct:   179 AWQTYVNFELRYKEIDRAREIYERFVYVHP-DVKNWIKFARFEESHGFIHGSRRVFERAV 237

Query:   244 EI---DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV 300
             E    D   + ++IA+   E  +   D AR +Y+ AL      +      +A+   E++ 
Sbjct:   238 EFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYALD-HLPKDRTQELFKAYTKHEKKY 296

Query:   301 GN--------LSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347
             G+        +S  +  +   +  N  +Y  W  + +L E +G+    ++IR  Y
Sbjct:   297 GDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDR---DQIRETY 348

GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP

GO:0007417 "central nervous system development" evidence=NAS

GO:0005634 "nucleus" evidence=IC;NAS

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0048663 "neuron fate commitment" evidence=NAS

GO:0007405 "neuroblast proliferation" evidence=NAS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0016607 "nuclear speck" evidence=IDA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0007438 "oenocyte development" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0008366 "axon ensheathment" evidence=IMP

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0051298 "centrosome duplication" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0072686 "mitotic spindle" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

MGI|MGI:1914127 Crnkl1 "Crn, crooked neck-like 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 194 (73.4 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 68/295 (23%), Positives = 136/295 (46%)

Query:    64 KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123
             + R+ F+ +   ++  I+ W  +A  E     I++AR +  + L     N  ++   A +
Sbjct:    65 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEM 124

Query:   124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
             E K  +   ARN++ +A    P+    W  ++ ME    N   ARQ+FER ++  P+ + 
Sbjct:   125 EMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQ- 183

Query:   184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
             AWH +  FE     +++ + + +    V+P     ++  A  E K++    ARK++ RA 
Sbjct:   184 AWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIK-YARFEEKHAYFAHARKVYERAV 242

Query:   244 EI-DPRH--QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV 300
             E     H  + +++A+   E  +   +  R +Y+ AL   S  E A    + + + E++ 
Sbjct:   243 EFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQE-AQELFKNYTIFEKKF 301

Query:   301 GN------LSAARRLFR--SSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347
             G+      +  ++R F+    +  N  +Y  W  + +L E   +   A+ +R +Y
Sbjct:   302 GDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVE---SDAEADTVREVY 353

GO:0000245 "spliceosomal complex assembly" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0006396 "RNA processing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|620507 Crnkl1 "crooked neck pre-mRNA splicing factor-like 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 194 (73.4 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 68/295 (23%), Positives = 136/295 (46%)

Query:    64 KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123
             + R+ F+ +   ++  I+ W  +A  E     I++AR +  + L     N  ++   A +
Sbjct:    65 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEM 124

Query:   124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
             E K  +   ARN++ +A    P+    W  ++ ME    N   ARQ+FER ++  P+ + 
Sbjct:   125 EMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQ- 183

Query:   184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
             AWH +  FE     +++ + + +    V+P     ++  A  E K++    ARK++ RA 
Sbjct:   184 AWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIK-YARFEEKHAYFAHARKVYERAV 242

Query:   244 EI-DPRH--QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV 300
             E     H  + +++A+   E  +   +  R +Y+ AL   S  E A    + + + E++ 
Sbjct:   243 EFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQE-AQELFKNYTIFEKKF 301

Query:   301 GN------LSAARRLFR--SSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347
             G+      +  ++R F+    +  N  +Y  W  + +L E   +   A+ +R +Y
Sbjct:   302 GDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVE---SDAEADTVREVY 353

GO:0000245 "spliceosomal complex assembly" evidence=ISO;ISS

GO:0003723 "RNA binding" evidence=ISO;ISS

GO:0005681 "spliceosomal complex" evidence=ISO;ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|F1MZT2 CRNKL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 8.7e-12, P = 8.7e-12
 Identities = 72/299 (24%), Positives = 136/299 (45%)

Query:    64 KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123
             + R+ F+ +   ++  I+ W  +A  E     I++AR +  + L     N  ++   A +
Sbjct:   149 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEM 208

Query:   124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
             E K  +   ARN++ +A    P+    W  ++ ME    N   ARQ+FER ++  P+ + 
Sbjct:   209 EMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWRPEEQ- 267

Query:   184 AWHVWGIFEANMGFIDKGKKLL-KIGHA---VNPRDPVLLQSLALLEYKYSTANLARKLF 239
             AWH +  FE     +D+ + +  +  H+   V+P D       A  E K+     ARK++
Sbjct:   268 AWHSYINFELRYKEVDRARTIYERYIHSLVLVHP-DVKNWIKYARFEEKHGYFAHARKVY 326

Query:   240 RRASEI-DPRH--QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVL 296
              RA E     H  + +++A+   E  +   +  R +Y+ AL   S  E A    + + + 
Sbjct:   327 ERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQE-AQELFKNYTIF 385

Query:   297 EQRVGN------LSAARRLFR--SSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347
             E++ G+      +  ++R F+    +  N  +Y  W  + +L E   +   AE +R +Y
Sbjct:   386 EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVE---SDAEAETVREVY 441

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	476
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-12
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	8e-08
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	1e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-07
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	5e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	1e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	2e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	5e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.003
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.004
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.004

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 7/265 (2%)

Query: 91  LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS 150
           LR G   KA     K  K    N  ++  L  +        +AR  F +A    P    +
Sbjct: 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501

Query: 151 WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA 210
               +++++Q+ N   A Q FE+ +   PKN  A           G  ++    L+    
Sbjct: 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561

Query: 211 VNPRDPVLLQSLALLEYKYSTANLARKL--FRRASEIDPRHQPVWIAWGWMEWKEGNLDT 268
           +NP++      LAL +Y      L + L     A++  P     W+  G  +   G+L+ 
Sbjct: 562 LNPQEIEPA--LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619

Query: 269 ARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWA 328
           A   +++ L++    +SA   L         + N + A    + +L +   +    +  A
Sbjct: 620 AVSSFKKLLALQP--DSALALLLLADA-YAVMKNYAKAITSLKRALELKPDNTEAQIGLA 676

Query: 329 QLEEDQGNSVRAEEIRNLYFQQRTE 353
           QL      +  A++I     +Q  +
Sbjct: 677 QLLLAAKRTESAKKIAKSLQKQHPK 701

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 54/256 (21%), Positives = 100/256 (39%), Gaps = 7/256 (2%)

Query: 23  KQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA 82
           +  +  +A A  AK  +  Q +N  +      +    G++ KARE F+ +   +     A
Sbjct: 443 RSGQFDKALAA-AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501

Query: 83  WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATK 142
               A +++++GN   A Q   K L     N      LA L  +    E+A     +A +
Sbjct: 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561

Query: 143 CNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK 202
            NP+     +A +Q  + +     A  +   A  A+P +  AW + G  +   G ++K  
Sbjct: 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621

Query: 203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTAN---LARKLFRRASEIDPRHQPVWIAWGWM 259
              K   A+ P       +L LL   Y+       A    +RA E+ P +    I    +
Sbjct: 622 SSFKKLLALQPDSA---LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678

Query: 260 EWKEGNLDTARELYER 275
                  ++A+++ + 
Sbjct: 679 LLAAKRTESAKKIAKS 694

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 20/99 (20%), Positives = 40/99 (40%)

Query: 82  AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT 141
           A      L  + G+  +A +   K L+    N   Y  LA    K  +YE+A   + +A 
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 142 KCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK 180
           + +P +  ++        +      A + +E+A++  P 
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 57/291 (19%), Positives = 103/291 (35%), Gaps = 16/291 (5%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN---PYIWQCWAVLENKLGNIGK 64
           P D      LGK+       A A     K       +N   P +    A      G   +
Sbjct: 53  PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL----ARAYLLQGKFQQ 108

Query: 65  ARELFDASTVADKGHIAAWHGWAVL-ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123
             +     T+ D    A       L  L  G ++ A++   + L     + Y    LA L
Sbjct: 109 VLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQL 168

Query: 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
               NR+++AR L  +    +P +  + +    + +   N   A   + +A+   P N  
Sbjct: 169 ALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIA 228

Query: 184 AWHVWGIFEANM----GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLF 239
                 +  A +    G  ++ +K         P  P+     AL++++      AR+  
Sbjct: 229 VL----LALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETL 284

Query: 240 RRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL 290
           + A +  P + P  +  G  E++ GNL+ A +   + L     +  A R L
Sbjct: 285 QDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLL 335

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 54.7 bits (132), Expect = 8e-08
 Identities = 75/375 (20%), Positives = 135/375 (36%), Gaps = 44/375 (11%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARE 67
           P +    +AL  +L +  +  EA   +A         +P      A+++ +  N   ARE
Sbjct: 224 PNNIAVLLALATILIEAGEFEEAEK-HADALLKKAPNSPLAHYLKALVDFQKKNYEDARE 282

Query: 68  LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127
               +  +   ++ A       E + GN+++A Q L + LK+   +    + LA ++ + 
Sbjct: 283 TLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL 342

Query: 128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHV 187
            R ++A      A   +P   A+     +  +   +   A +   +A +  P+N  A   
Sbjct: 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402

Query: 188 WGIFEANMG----------------------------------FIDKGKKLLKIGHAVNP 213
            GI + + G                                    DK     K      P
Sbjct: 403 LGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462

Query: 214 RDP---VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAR 270
            +     LL ++ L +   +    AR+ F +A  I+P   P       ++ +EGN D A 
Sbjct: 463 DNASLHNLLGAIYLGKGDLAK---AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519

Query: 271 ELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQL 330
           + +E+ L+ID     A   + A   L  R GN   A      +  +N Q     +  AQ 
Sbjct: 520 QRFEKVLTIDPKNLRA---ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY 576

Query: 331 EEDQGNSVRAEEIRN 345
              +G   +A  I N
Sbjct: 577 YLGKGQLKKALAILN 591

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 9/197 (4%)

Query: 116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAV 175
               LAL   +   Y QA+    +A + +P    + +  +    +   N  A + + +A+
Sbjct: 37  ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL 96

Query: 176 QASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN----PRDPVLLQSLALLEYKYST 231
             +P N    + +G F    G  ++  +  +   A+           L++L L   K   
Sbjct: 97  SLAPNNGDVLNNYGAFLCAQGRPEEAMQQFE--RALADPAYGEPSDTLENLGLCALKAGQ 154

Query: 232 ANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQ 291
            + A +  +RA E+DP+  P  +    + +K G+   AR   ER         + A  L 
Sbjct: 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQ---QRGGAQAESLL 211

Query: 292 AWGVLEQRVGNLSAARR 308
               + +R+G+ +AA+R
Sbjct: 212 LGIRIAKRLGDRAAAQR 228

Length = 250

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 51.4 bits (121), Expect = 4e-07
 Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 7/221 (3%)

Query: 80  IAAWHGWAVLELRQGNIKKARQLLAKGLKFC--GGNEYIYQTLALLEAKANRYEQARNLF 137
                  A+  L+ G +++A +LL K L+             L LL     +YE+A  L 
Sbjct: 59  AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118

Query: 138 RQATKCNPKSCASWIAWS-QMEMQQENNLAARQLFERAVQASPKNR---FAWHVWGIFEA 193
            +A   +P    +    +     +  +   A +L+E+A++  P+      A    G    
Sbjct: 119 EKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLE 178

Query: 194 NMGFIDKGKKLLKIGHAVNP-RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV 252
            +G  ++  +LL+    +NP  D   L +L LL  K      A + + +A E+DP +   
Sbjct: 179 ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEA 238

Query: 253 WIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW 293
                 +  + G  + A E  E+AL +D    +    L   
Sbjct: 239 LYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLL 279

Length = 291

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 22/112 (19%), Positives = 48/112 (42%)

Query: 74  VADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQA 133
            + +G +AA +G A+     G   +A +LL   +     N Y  +    +  +AN+ ++A
Sbjct: 300 RSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEA 359

Query: 134 RNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185
               ++A   +P S    +  +Q  ++      A ++  R +   P++   W
Sbjct: 360 IERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGW 411

Length = 484

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 22/89 (24%), Positives = 41/89 (46%)

Query: 58  KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
           KLG+  +A E ++ +   D  +  A++  A    + G  ++A +   K L+    N   Y
Sbjct: 12  KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNPK 146
             L L   K  +YE+A   + +A + +P 
Sbjct: 72  YNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 34/127 (26%)

Query: 156 QMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD 215
            +  +  +   A + +E+A++  P N  A++        +G  ++               
Sbjct: 8   NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEE--------------- 52

Query: 216 PVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYER 275
                              A + + +A E+DP +   +   G   +K G  + A E YE+
Sbjct: 53  -------------------ALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93

Query: 276 ALSIDST 282
           AL +D  
Sbjct: 94  ALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 257 GWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316
           G + +K G+ D A E YE+AL +D     A   L        ++G    A   +  +L +
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNADAYYNL---AAAYYKLGKYEEALEDYEKALEL 63

Query: 317 NSQSYITWMTWAQLEEDQGNSVRAEE 342
           +  +   +          G    A E
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALE 89

Length = 100

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 9/198 (4%)

Query: 116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAV 175
           I   LAL   +    E A+    +A + +P    +++A +    Q      A   F RA+
Sbjct: 33  IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL 92

Query: 176 QASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN----PRDPVLLQSLALLEYKYST 231
             +P N    + +G F    G  ++  +  +   A+     P+    L++  L   K   
Sbjct: 93  TLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQ--AIEDPLYPQPARSLENAGLCALKAGD 150

Query: 232 ANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQ 291
            + A K   RA +IDP+     +    + +  G    AR   ER      T    A  L 
Sbjct: 151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQ---QTYNQTAESLW 207

Query: 292 AWGVLEQRVGNLSAARRL 309
               + + +G+++AA+R 
Sbjct: 208 LGIRIARALGDVAAAQRY 225

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 4/195 (2%)

Query: 53  AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG 112
           A L  + GN  +A    + +   +   I      A   L +G +KKA  +L +       
Sbjct: 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599

Query: 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFE 172
           +   +  L   +  A    +A + F++     P S  + +  +      +N   A    +
Sbjct: 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659

Query: 173 RAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPV---LLQSLALLEYKY 229
           RA++  P N  A              +  KK+ K     +P+  +   L   L L +  Y
Sbjct: 660 RALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719

Query: 230 STANLA-RKLFRRAS 243
             A  A RK  +RA 
Sbjct: 720 PAAIQAYRKALKRAP 734

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 16/99 (16%), Positives = 42/99 (42%)

Query: 115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA 174
                L  L  K   Y++A   + +A + +P +  ++   +    +      A + +E+A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 175 VQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNP 213
           ++  P N  A++  G+    +G  ++  +  +    ++P
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 120 LALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP 179
           LA    +A  Y++A      A    P +  + +   +  ++Q     A  L   A+ A P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 180 KN 181
            +
Sbjct: 63  DD 64

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 233 NLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA 292
           + A + + +A E+DP +   +       +K G  + A E YE+AL +D      A+    
Sbjct: 17  DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PDNAKAYYN 73

Query: 293 WGVLEQRVGNLSAARRLFRSSLNINSQ 319
            G+   ++G    A   +  +L ++  
Sbjct: 74  LGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 36/195 (18%)

Query: 159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVL 218
           +QQ +   A++  E+A++  P    A  V                               
Sbjct: 46  LQQGDYAQAKKNLEKALEHDPSYYLAHLV------------------------------- 74

Query: 219 LQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALS 278
               A    K    +LA + +R+A  + P +  V   +G     +G  + A + +ERAL+
Sbjct: 75  ---RAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131

Query: 279 IDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSV 338
            D      +  L+  G+   + G    A    + +L ++ Q     +  A+L    G+  
Sbjct: 132 -DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190

Query: 339 RAEEIRNLYFQQRTE 353
            A      Y QQR  
Sbjct: 191 PARLYLERY-QQRGG 204

Length = 250

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 82  AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL-LEAKANRYEQARNLFRQA 140
           A         + G+  +A +   K L+    N   Y  LAL        YE+A     +A
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 141 TKCNP 145
            + +P
Sbjct: 65  LELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.8 bits (96), Expect = 5e-04
 Identities = 51/272 (18%), Positives = 100/272 (36%), Gaps = 11/272 (4%)

Query: 128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL-AARQLFERAVQASPKNRFA-- 184
                A  +  +A         + +      ++    L  A +L E A++  P +  A  
Sbjct: 2   KDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGL 61

Query: 185 WHVWGIFEANMGFIDKGKKLLK--IGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA 242
             +  +    +G +++  +LL+  +   + P     L +L LL         A +L  +A
Sbjct: 62  LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121

Query: 243 SEIDPRHQPVWIAWG-WMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
             +DP              ++ G+ + A ELYE+AL +D      A  L A G L + +G
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181

Query: 302 NLSAARRLFRSSLNIN-SQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASW 360
               A  L   +L +N        +    L    G    A E    Y+++  E+  D + 
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE----YYEKALELDPDNAE 237

Query: 361 VMGFMDIIDPALDRIKQLLNLEKSSYKEPSAY 392
            +  + ++   L R ++ L   + + +     
Sbjct: 238 ALYNLALLLLELGRYEEALEALEKALELDPDL 269

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL-AARQLF 171
           N    + L     K   Y++A   + +A + +P +  ++   +   ++   +   A +  
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 172 ERAVQASP 179
           E+A++  P
Sbjct: 62  EKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 14  YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCW---AVLENKLGNIGKARELFD 70
            + LG +  K     EA   Y K  +     +P     +   A    KLG   +A E ++
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGKYEEALEDYE 58

Query: 71  ASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC 110
            +   D  +  A++   +   + G  ++A +   K L+  
Sbjct: 59  KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.1 bits (89), Expect = 0.004
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 4   IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCW--AVLENKLGN 61
           +D  P+     +ALG  L +     EA  +Y K  +     N           L   LG 
Sbjct: 124 LDPDPDLAEALLALG-ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182

Query: 62  IGKARELFD-ASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL 120
             +A EL + A  +       A     +L L+ G  ++A +   K L+    N      L
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242

Query: 121 ALLEAKANRYEQARNLFRQATKCNPK 146
           ALL  +  RYE+A     +A + +P 
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPD 268

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	476
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	100.0
KOG1126	638	consensus DNA-binding cell division cycle control	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
KOG2003	840	consensus TPR repeat-containing protein [General f	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.97
KOG1126	638	consensus DNA-binding cell division cycle control	99.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.97
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.97
PRK14574	822	hmsH outer membrane protein; Provisional	99.97
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.96
KOG2076	895	consensus RNA polymerase III transcription factor	99.96
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.96
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.96
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.95
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.95
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.95
PRK14574	822	hmsH outer membrane protein; Provisional	99.95
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.94
PLN03218	1060	maturation of RBCL 1; Provisional	99.94
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.94
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.94
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.94
PLN03218	1060	maturation of RBCL 1; Provisional	99.94
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.94
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.94
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.94
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.94
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.93
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.93
KOG2076	895	consensus RNA polymerase III transcription factor	99.93
KOG2003	840	consensus TPR repeat-containing protein [General f	99.93
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.93
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.93
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.92
PLN03077	857	Protein ECB2; Provisional	99.92
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.92
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.92
PRK12370	553	invasion protein regulator; Provisional	99.92
KOG1129	478	consensus TPR repeat-containing protein [General f	99.92
PRK12370	553	invasion protein regulator; Provisional	99.91
PLN03077	857	Protein ECB2; Provisional	99.91
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.91
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.9
KOG1129	478	consensus TPR repeat-containing protein [General f	99.9
KOG1125	579	consensus TPR repeat-containing protein [General f	99.89
KOG1125	579	consensus TPR repeat-containing protein [General f	99.89
PRK11189	296	lipoprotein NlpI; Provisional	99.89
PRK11189	296	lipoprotein NlpI; Provisional	99.89
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.88
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.88
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.88
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.88
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.88
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.87
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.87
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.87
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.87
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.86
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.86
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.85
PLN02789	320	farnesyltranstransferase	99.85
PLN02789	320	farnesyltranstransferase	99.85
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.85
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.84
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.84
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.84
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.83
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.8
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.77
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.77
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.77
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.77
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.74
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.74
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.73
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.73
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.72
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.7
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.7
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.69
PRK15359	144	type III secretion system chaperone protein SscB;	99.69
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.69
PRK15359	144	type III secretion system chaperone protein SscB;	99.68
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.68
PRK04841	903	transcriptional regulator MalT; Provisional	99.66
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.66
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.66
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.66
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.65
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.65
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.65
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.63
PRK04841	903	transcriptional regulator MalT; Provisional	99.63
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.61
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.59
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.59
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.59
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.56
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.56
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.56
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.55
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.54
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.5
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.48
KOG0553	304	consensus TPR repeat-containing protein [General f	99.44
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.42
KOG0553	304	consensus TPR repeat-containing protein [General f	99.42
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.42
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.42
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.39
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.33
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.33
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.31
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.31
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.3
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.3
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.27
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.26
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.25
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.25
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.24
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.23
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.22
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.21
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.21
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.19
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.19
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.19
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.19
COG3898	531	Uncharacterized membrane-bound protein [Function u	99.16
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.16
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.15
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.14
PRK11906	458	transcriptional regulator; Provisional	99.14
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.14
KOG1258	577	consensus mRNA processing protein [RNA processing	99.14
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.14
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.12
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.12
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.12
PRK10803	263	tol-pal system protein YbgF; Provisional	99.11
PRK11906	458	transcriptional regulator; Provisional	99.11
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.1
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.1
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.1
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.09
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.09
PF12688	120	TPR_5: Tetratrico peptide repeat	99.09
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.09
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.08
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.08
COG3898	531	Uncharacterized membrane-bound protein [Function u	99.07
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.07
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.06
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.05
PRK15331	165	chaperone protein SicA; Provisional	99.04
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.03
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.03
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.01
PRK10803	263	tol-pal system protein YbgF; Provisional	99.01
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.0
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.0
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.99
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.99
PRK15331	165	chaperone protein SicA; Provisional	98.97
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.97
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	98.97
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.92
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.91
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.9
PF12688	120	TPR_5: Tetratrico peptide repeat	98.89
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.88
KOG2471	696	consensus TPR repeat-containing protein [General f	98.88
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.87
KOG1258	577	consensus mRNA processing protein [RNA processing	98.87
PF13512	142	TPR_18: Tetratricopeptide repeat	98.84
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.83
KOG2471	696	consensus TPR repeat-containing protein [General f	98.77
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.76
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.74
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.73
PF13512	142	TPR_18: Tetratricopeptide repeat	98.72
PF13371	73	TPR_9: Tetratricopeptide repeat	98.72
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.71
PF13371	73	TPR_9: Tetratricopeptide repeat	98.71
KOG4234	271	consensus TPR repeat-containing protein [General f	98.69
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.68
KOG4234	271	consensus TPR repeat-containing protein [General f	98.68
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.66
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.65
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.6
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.58
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.58
KOG4555	175	consensus TPR repeat-containing protein [Function	98.55
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.54
KOG1586	288	consensus Protein required for fusion of vesicles	98.54
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.53
KOG1586	288	consensus Protein required for fusion of vesicles	98.51
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	98.45
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.45
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.44
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.43
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.37
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.36
KOG4555	175	consensus TPR repeat-containing protein [Function	98.35
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.33
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.32
KOG1585	308	consensus Protein required for fusion of vesicles	98.31
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.3
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.3
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.29
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.28
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.26
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.25
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.23
KOG1585	308	consensus Protein required for fusion of vesicles	98.23
PF13428	44	TPR_14: Tetratricopeptide repeat	98.22
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.18
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.17
PF13428	44	TPR_14: Tetratricopeptide repeat	98.16
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.15
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.15
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.13
KOG1550	552	consensus Extracellular protein SEL-1 and related	98.09
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.08
KOG1550	552	consensus Extracellular protein SEL-1 and related	98.05
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.05
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	98.03
PF13431	34	TPR_17: Tetratricopeptide repeat	98.03
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	98.03
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.02
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.02
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.99
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.98
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.93
PF13431	34	TPR_17: Tetratricopeptide repeat	97.93
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.92
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.88
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.86
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.83
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.79
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.79
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.77
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.76
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.74
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.73
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.73
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.72
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.68
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.68
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.67
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.66
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.65
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.62
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.62
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.56
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.53
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.53
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.52
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.5
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.45
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.45
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.44
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.38
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.33
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.27
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	97.24
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.23
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.17
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.09
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.08
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	97.02
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.91
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.87
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.83
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.81
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.8
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.75
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.68
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.65
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.64
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.63
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.63
PRK10941	269	hypothetical protein; Provisional	96.6
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.53
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.52
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.5
PF08492	59	SRP72: SRP72 RNA-binding domain; InterPro: IPR0136	96.48
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.47
PRK11619	644	lytic murein transglycosylase; Provisional	96.46
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.45
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.44
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.43
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.43
PRK10941	269	hypothetical protein; Provisional	96.43
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.4
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.38
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.34
KOG2422	665	consensus Uncharacterized conserved protein [Funct	96.34
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.25
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.19
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	96.18
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.09
KOG2422	665	consensus Uncharacterized conserved protein [Funct	96.09
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.06
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.03
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.02
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.94
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.9
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.9
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.87
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.85
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.83
COG1747	711	Uncharacterized N-terminal domain of the transcrip	95.79
KOG3364	149	consensus Membrane protein involved in organellar	95.75
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.7
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.69
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.6
PRK11619	644	lytic murein transglycosylase; Provisional	95.53
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.44
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.41
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.37
COG1747	711	Uncharacterized N-terminal domain of the transcrip	95.35
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.3
KOG3364	149	consensus Membrane protein involved in organellar	95.26
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.14
COG5159	421	RPN6 26S proteasome regulatory complex component [	94.89
PF13041	50	PPR_2: PPR repeat family	94.88
KOG1463	411	consensus 26S proteasome regulatory complex, subun	94.57
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.55
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.52
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.49
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.49
KOG1310	758	consensus WD40 repeat protein [General function pr	94.43
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.31
KOG1310	758	consensus WD40 repeat protein [General function pr	94.26
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.93
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	93.78
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.77
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.73
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.71
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.68
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.36
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.06
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.01
COG2912	269	Uncharacterized conserved protein [Function unknow	93.01
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.99
COG2912	269	Uncharacterized conserved protein [Function unknow	92.69
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	92.31
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.18
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.04
PF12854	34	PPR_1: PPR repeat	92.0
KOG2581	493	consensus 26S proteasome regulatory complex, subun	91.92
COG5159	421	RPN6 26S proteasome regulatory complex component [	91.89
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.69
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.65
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	91.54
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.52
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	91.25
COG4941	415	Predicted RNA polymerase sigma factor containing a	91.22
PF13041	50	PPR_2: PPR repeat family	91.05
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.05
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.87
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.52
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.42
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.05
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.79
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	89.73
PF12854	34	PPR_1: PPR repeat	89.72
COG3947	361	Response regulator containing CheY-like receiver a	89.65
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	89.56
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.48
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.47
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	89.16
KOG4014	248	consensus Uncharacterized conserved protein (conta	88.6
COG3947	361	Response regulator containing CheY-like receiver a	88.59
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	88.19
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	88.13
KOG2581	493	consensus 26S proteasome regulatory complex, subun	88.05
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.88
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.2
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.85
KOG1463	411	consensus 26S proteasome regulatory complex, subun	86.52
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.45
COG4941	415	Predicted RNA polymerase sigma factor containing a	86.28
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	85.98
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	85.86
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	85.29
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	85.17
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	84.5
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	84.43
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	83.94
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	83.93
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	82.94
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.61
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	82.31
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	82.23
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	80.85
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	80.82
PRK12798	421	chemotaxis protein; Reviewed	80.79
PRK09687	280	putative lyase; Provisional	80.26

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-50  Score=362.30  Aligned_cols=388  Identities=15%  Similarity=0.149  Sum_probs=376.3

Q ss_pred             CcccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH
Q 011845            1 MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI   80 (476)
Q Consensus         1 l~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~   80 (476)
                      |.+++.+|.-.+++-.+|.++...|++++|+..|+.+++.. |+..++|.++|.++...|+.+.|..+|..+++++|...
T Consensus       106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~  184 (966)
T KOG4626|consen  106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLY  184 (966)
T ss_pred             hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchh
Confidence            35678999999999999999999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ  160 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  160 (476)
                      .+...+|.++...|+..+|..+|.++++..|....+|.++|.++...|+...|+..|+++++++|+..++|+++|.+|..
T Consensus       185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke  264 (966)
T KOG4626|consen  185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE  264 (966)
T ss_pred             hhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR  240 (476)
Q Consensus       161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  240 (476)
                      .+.++.|+.+|.+++...|++..++-++|.+|..+|..+-|+..|+++++..|..+.++.++|..+...|+..+|..+|.
T Consensus       265 ~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn  344 (966)
T KOG4626|consen  265 ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN  344 (966)
T ss_pred             HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 011845          241 RASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS  320 (476)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  320 (476)
                      +++...|+.+++.+++|.++..+|.+++|..+|.++++..|....   ...++|.+|.+.|++++|+.+|+.++.+.|..
T Consensus       345 kaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa---a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f  421 (966)
T KOG4626|consen  345 KALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA---AHNNLASIYKQQGNLDDAIMCYKEALRIKPTF  421 (966)
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh---hhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence            999999999999999999999999999999999999999998844   57899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCCCCCCC
Q 011845          321 YITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSAY  392 (476)
Q Consensus       321 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  392 (476)
                      .+++.++|..|..+|+...|+..|.++++..|   +...+++.++...|+..+|+..|+.++++.|+.+++..+.
T Consensus       422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl  496 (966)
T KOG4626|consen  422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL  496 (966)
T ss_pred             HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence            99999999999999999999999999999777   4567899999999999999999999999999999987655

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-46  Score=333.80  Aligned_cols=351  Identities=18%  Similarity=0.176  Sum_probs=342.2

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      .++++.|++.++|..+|.++..+|+.+.|..+|..+++.+ |....+...+|.++...|+.++|..+|.++++..|....
T Consensus       141 ~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi  219 (966)
T KOG4626|consen  141 AAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI  219 (966)
T ss_pred             HHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee
Confidence            3678999999999999999999999999999999999998 888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      +|..+|.++..+|+...|+..|+++++++|....+|+++|.+|...+.++.|+..|.+++...|++..++-++|.+|..+
T Consensus       220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq  299 (966)
T KOG4626|consen  220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ  299 (966)
T ss_pred             eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR  241 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  241 (476)
                      |..+-|+..|+++++..|+.+.++.+++..+...|+..+|..+|.+++..+|.++++.+++|.++..+|.+++|..+|.+
T Consensus       300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~  379 (966)
T KOG4626|consen  300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK  379 (966)
T ss_pred             ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH
Q 011845          242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY  321 (476)
Q Consensus       242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  321 (476)
                      +++..|+...++.++|.+|.++|++++|+.+|+.++.+.|..   ...+.++|..|...|+.+.|+.+|.+++..+|...
T Consensus       380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f---Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A  456 (966)
T KOG4626|consen  380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF---ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA  456 (966)
T ss_pred             HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH---HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence            999999999999999999999999999999999999999998   45689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcc
Q 011845          322 ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVD  356 (476)
Q Consensus       322 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  356 (476)
                      +++.+|+.++...|+..+|+.-|+.++...|+..+
T Consensus       457 eAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd  491 (966)
T KOG4626|consen  457 EAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD  491 (966)
T ss_pred             HHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence            99999999999999999999999999998776554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=5.5e-37  Score=303.80  Aligned_cols=369  Identities=16%  Similarity=0.167  Sum_probs=321.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL   91 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   91 (476)
                      ..+..+|..++..|+|++|+..|++++... | ++..+..+|.|+..+|++++|+..++++++.+|++..+|+.+|.++.
T Consensus       128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~-p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECK-P-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            457789999999999999999999999987 5 47889999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHhhccCCCcH------------------------------HHHHHHHH-------------------
Q 011845           92 RQGNIKKARQLLAKGLKFCGGNE------------------------------YIYQTLAL-------------------  122 (476)
Q Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~------------------------------~~~~~la~-------------------  122 (476)
                      .+|++++|+..|..+...++.+.                              ..+..++.                   
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            99999999987766544332111                              11111111                   


Q ss_pred             --------------HH---HHhccHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845          123 --------------LE---AKANRYEQARNLFRQATKCN---PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR  182 (476)
Q Consensus       123 --------------~~---~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  182 (476)
                                    .+   ...+++++|+..|++++...   |....++..+|.++...|++++|+..|++++..+|.+.
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~  365 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT  365 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence                          11   11357999999999999864   67778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 011845          183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK  262 (476)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (476)
                      ..|..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++...+..+|.++..
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~  445 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK  445 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH------HHHHH-HHHHcC
Q 011845          263 EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITW------MTWAQ-LEEDQG  335 (476)
Q Consensus       263 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~l~~-~~~~~g  335 (476)
                      .|++++|+..|++++...|+++.   ++..+|.++...|++++|+..|++++.+.|++...+      ...+. ++...|
T Consensus       446 ~g~~~eA~~~~~~al~~~P~~~~---~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~  522 (615)
T TIGR00990       446 EGSIASSMATFRRCKKNFPEAPD---VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ  522 (615)
T ss_pred             CCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence            99999999999999999999855   467779999999999999999999999998754322      22233 334479


Q ss_pred             ChHHHHHHHHHHHhhhhhh---cchhhhhhhhcccchHHHHHHHHHhccccCC
Q 011845          336 NSVRAEEIRNLYFQQRTEV---VDDASWVMGFMDIIDPALDRIKQLLNLEKSS  385 (476)
Q Consensus       336 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  385 (476)
                      ++++|..++++++...|+.   +..+|+++...|++++|+..|++++++.+..
T Consensus       523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~  575 (615)
T TIGR00990       523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE  575 (615)
T ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence            9999999999998876644   4678999999999999999999999987763

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.1e-36  Score=319.31  Aligned_cols=379  Identities=17%  Similarity=0.153  Sum_probs=310.4

Q ss_pred             cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845            4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus         4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      +...|.++..+..+|.++...|++++|+..|+++++.. |.+..++..++.++...|++++|+..|++++..+|.+..++
T Consensus       458 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  536 (899)
T TIGR02917       458 EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI  536 (899)
T ss_pred             HHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            45678888889999999999999999999999988877 78888888889999999999999999999988888888888


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                      ..++.++...|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.++..|..+|.++...|+
T Consensus       537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  616 (899)
T TIGR02917       537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD  616 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence            88888888888888998888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845          164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS  243 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  243 (476)
                      +++|+..|+++++..|.++..+..++.++...|++++|+..+++++...|++..++..++.++...|++++|+.+++.+.
T Consensus       617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  696 (899)
T TIGR02917       617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ  696 (899)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 011845          244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYIT  323 (476)
Q Consensus       244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  323 (476)
                      +..|.++..+..+|.++...|++++|+..|++++...|++.    .+..++.++...|++++|...+++++..+|++..+
T Consensus       697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  772 (899)
T TIGR02917       697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ----NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL  772 (899)
T ss_pred             hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            88888888888888888888888888888888888777762    34556777777777777777777777777777777


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhcccchHHHHHHHHHhccccCCCCC
Q 011845          324 WMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKE  388 (476)
Q Consensus       324 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  388 (476)
                      +..++.++...|++++|...|+++++..|.   +...+++++...|+ .+|+..+++++.+.|+++..
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~  839 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI  839 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence            777777777777777777777777765542   33456666666666 66777777776666666544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2e-36  Score=317.36  Aligned_cols=382  Identities=18%  Similarity=0.161  Sum_probs=315.2

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA   82 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~   82 (476)
                      +++.+|+.......++..+...|++++|+..+++++... |.++..+..+|.++...|++++|+..|++++..+|.+..+
T Consensus       423 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  501 (899)
T TIGR02917       423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA  501 (899)
T ss_pred             HHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence            456677777788888888888888888888888887766 6777888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845           83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE  162 (476)
Q Consensus        83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~  162 (476)
                      +..++.++...|++++|+..+++++...|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++...|
T Consensus       502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  581 (899)
T TIGR02917       502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG  581 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845          163 NNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA  242 (476)
Q Consensus       163 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  242 (476)
                      ++++|+..+++++...|.++..|..++.++...|++++|+..|+++++..|.++.++..++.++...|++++|+..|+++
T Consensus       582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (899)
T TIGR02917       582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA  661 (899)
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 011845          243 SEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYI  322 (476)
Q Consensus       243 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  322 (476)
                      ++..|++...+..++.++...|++++|+..++.+....|.+...   +..+|.++...|++++|+..|++++...|++ .
T Consensus       662 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~  737 (899)
T TIGR02917       662 LELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG---FELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q  737 (899)
T ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence            88888888888888888888888888888888888887776443   5566888888888888888888888888777 6


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845          323 TWMTWAQLEEDQGNSVRAEEIRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEP  389 (476)
Q Consensus       323 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  389 (476)
                      .+..++.++...|++++|...++.++...|   .+...++.++...|++++|+..|+++++..|+++...
T Consensus       738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  807 (899)
T TIGR02917       738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL  807 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence            677788888888888888888888877655   3445677788888888888888888888888766544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.1e-35  Score=294.68  Aligned_cols=349  Identities=15%  Similarity=0.118  Sum_probs=306.5

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc--
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH--   79 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--   79 (476)
                      +++...|+ +..+..+|.+|...|++++|+..+.++++.+ |.+..+++.+|.++..+|++++|+..|..+...++.+  
T Consensus       152 ~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~  229 (615)
T TIGR00990       152 KAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE  229 (615)
T ss_pred             HHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence            46778885 7789999999999999999999999999998 8999999999999999999999998776654332211  


Q ss_pred             ----------------------------HHHHHHHHH---------------------------------HH---HHhCC
Q 011845           80 ----------------------------IAAWHGWAV---------------------------------LE---LRQGN   95 (476)
Q Consensus        80 ----------------------------~~~~~~la~---------------------------------~~---~~~~~   95 (476)
                                                  ...+..++.                                 .+   ...++
T Consensus       230 ~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~  309 (615)
T TIGR00990       230 QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADES  309 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhh
Confidence                                        111111111                                 11   12357


Q ss_pred             HHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHH
Q 011845           96 IKKARQLLAKGLKF---CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFE  172 (476)
Q Consensus        96 ~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  172 (476)
                      +++|+..|++++..   .|....++..+|.++...|++++|+..|++++..+|.....|..+|.++...|++++|+..|+
T Consensus       310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~  389 (615)
T TIGR00990       310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD  389 (615)
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999976   477788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 011845          173 RAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV  252 (476)
Q Consensus       173 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  252 (476)
                      ++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...|+++.+
T Consensus       390 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~  469 (615)
T TIGR00990       390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV  469 (615)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 011845          253 WIAWGWMEWKEGNLDTARELYERALSIDSTTESA----ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWA  328 (476)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  328 (476)
                      +..+|.++...|++++|+..|++++.+.|.....    ..++...+.++...|++++|..++++++.++|++..++..+|
T Consensus       470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la  549 (615)
T TIGR00990       470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA  549 (615)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            9999999999999999999999999998875332    112222233444579999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhhh
Q 011845          329 QLEEDQGNSVRAEEIRNLYFQQRT  352 (476)
Q Consensus       329 ~~~~~~g~~~~A~~~~~~~~~~~~  352 (476)
                      .++.+.|++++|+..++++.+...
T Consensus       550 ~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       550 QLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             HHHHHccCHHHHHHHHHHHHHHhc
Confidence            999999999999999999887544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.2e-35  Score=312.37  Aligned_cols=382  Identities=16%  Similarity=0.119  Sum_probs=311.6

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCC---------------------------------CCChHH-
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQ---------------------------------GENPYI-   48 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---------------------------------~~~~~~-   48 (476)
                      +++.+|+++.+++.+|.++...|++++|+..+++++...+                                 |.+... 
T Consensus       173 ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~  252 (1157)
T PRK11447        173 LNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA  252 (1157)
T ss_pred             HHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence            4677899999999999999999999999999998764321                                 111000 


Q ss_pred             -------------------HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhcc
Q 011845           49 -------------------WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKF  109 (476)
Q Consensus        49 -------------------~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  109 (476)
                                         ....|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.
T Consensus       253 ~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~  332 (1157)
T PRK11447        253 AARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL  332 (1157)
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                               0133677888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHH--------------HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845          110 CGGNEY--------------IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAV  175 (476)
Q Consensus       110 ~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  175 (476)
                      +|++..              .....+.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++
T Consensus       333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL  412 (1157)
T PRK11447        333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL  412 (1157)
T ss_pred             CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            887642              123457888899999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCcHHHHHHHHH------------------------------------------HHHHcCCHHHHHHHHHHHHhcCC
Q 011845          176 QASPKNRFAWHVWGI------------------------------------------FEANMGFIDKGKKLLKIGHAVNP  213 (476)
Q Consensus       176 ~~~~~~~~~~~~l~~------------------------------------------~~~~~~~~~~A~~~~~~~~~~~~  213 (476)
                      +.+|++..++..++.                                          ++...|++++|+..|+++++.+|
T Consensus       413 ~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P  492 (1157)
T PRK11447        413 RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP  492 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            999998766654443                                          34467899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH----------------
Q 011845          214 RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL----------------  277 (476)
Q Consensus       214 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~----------------  277 (476)
                      +++.+++.+|.++...|++++|+..++++++..|+++..++.++..+...|++++|+..++++.                
T Consensus       493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~  572 (1157)
T PRK11447        493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ  572 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence            9999999999999999999999999999999999888887777766666666666666655432                


Q ss_pred             ------------------------ccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 011845          278 ------------------------SIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED  333 (476)
Q Consensus       278 ------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  333 (476)
                                              +..|.++.   .+..+|.++...|++++|+..|+++++.+|+++.++..++.++..
T Consensus       573 ~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~---~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~  649 (1157)
T PRK11447        573 SDQVLETANRLRDSGKEAEAEALLRQQPPSTR---IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA  649 (1157)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCCCCch---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                    12344432   356678888888888888888888888888888888888888888


Q ss_pred             cCChHHHHHHHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845          334 QGNSVRAEEIRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK  387 (476)
Q Consensus       334 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  387 (476)
                      .|++++|...++.+....|   .....++.++...|++++|+..|++++...|+++.
T Consensus       650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~  706 (1157)
T PRK11447        650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP  706 (1157)
T ss_pred             CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence            8888888888888776544   33455777888888888888888888887776654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2.1e-35  Score=310.59  Aligned_cols=368  Identities=15%  Similarity=0.121  Sum_probs=316.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH--------------
Q 011845           16 ALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA--------------   81 (476)
Q Consensus        16 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--------------   81 (476)
                      .+|.++...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|++..              
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            45788888999999999999999887 888899999999999999999999999999988887542              


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH-----
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ-----  156 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~-----  156 (476)
                      ....+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|++..++..++.     
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            123457788889999999999999999999999999999999999999999999999999998888766554443     


Q ss_pred             -------------------------------------HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 011845          157 -------------------------------------MEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFID  199 (476)
Q Consensus       157 -------------------------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  199 (476)
                                                           ++...|++++|+..|+++++.+|+++.+++.++.++...|+++
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence                                                 3456789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------------
Q 011845          200 KGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA-------------------------------------  242 (476)
Q Consensus       200 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-------------------------------------  242 (476)
                      +|+..+++++...|.++..++.++..+...+++++|+..++++                                     
T Consensus       513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA  592 (1157)
T PRK11447        513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA  592 (1157)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999988888877777777777776665542                                     


Q ss_pred             ---hccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845          243 ---SEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ  319 (476)
Q Consensus       243 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  319 (476)
                         ++..|.++..+..+|.++...|++++|+..|+++++..|++..   .+..++.++...|++++|++.|+++++..|+
T Consensus       593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~---a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~  669 (1157)
T PRK11447        593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD---ARLGLIEVDIAQGDLAAARAQLAKLPATAND  669 (1157)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence               2246888889999999999999999999999999999999965   4778899999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---------hcchhhhhhhhcccchHHHHHHHHHhc---cccCCCC
Q 011845          320 SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---------VVDDASWVMGFMDIIDPALDRIKQLLN---LEKSSYK  387 (476)
Q Consensus       320 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~  387 (476)
                      +..++..++.++...|++++|.+++++++...+.         +....+.++...|++++|+..|++++.   +.|..+.
T Consensus       670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~  749 (1157)
T PRK11447        670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ  749 (1157)
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence            9999999999999999999999999999886432         334568889999999999999999985   4444444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=4.7e-35  Score=288.83  Aligned_cols=364  Identities=11%  Similarity=0.037  Sum_probs=329.3

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHH
Q 011845            9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAV   88 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~   88 (476)
                      ++.......+..+.+.|++++|+..++.++... |.++.+++.+|.+....|++++|+..|++++..+|+++.++..+|.
T Consensus        40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~  118 (656)
T PRK15174         40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVAS  118 (656)
T ss_pred             ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            344556677788889999999999999999988 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH
Q 011845           89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR  168 (476)
Q Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~  168 (476)
                      ++...|++++|+..|++++...|++..++..++.++...|++++|+..+++++...|+++.++..++ .+...|++++|+
T Consensus       119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~  197 (656)
T PRK15174        119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDH  197 (656)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988887664 478899999999


Q ss_pred             HHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHh
Q 011845          169 QLFERAVQASPK-NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANL----ARKLFRRAS  243 (476)
Q Consensus       169 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~~  243 (476)
                      ..+++++...|. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++    |+..|++++
T Consensus       198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al  277 (656)
T PRK15174        198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL  277 (656)
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence            999999988763 344556668889999999999999999999999999999999999999999986    899999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 011845          244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYIT  323 (476)
Q Consensus       244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  323 (476)
                      ..+|+++.++..+|.++...|++++|+..+++++..+|+++..   +..+|.++...|++++|+..|++++..+|++..+
T Consensus       278 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a---~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~  354 (656)
T PRK15174        278 QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV---RAMYARALRQVGQYTAASDEFVQLAREKGVTSKW  354 (656)
T ss_pred             hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence            9999999999999999999999999999999999999998654   6677999999999999999999999999999887


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhccccCCC
Q 011845          324 WMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSY  386 (476)
Q Consensus       324 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  386 (476)
                      +..++.++...|++++|...|+++++..|+..         ...+++|+..|.++++..+...
T Consensus       355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~---------~~~~~ea~~~~~~~~~~~~~~~  408 (656)
T PRK15174        355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL---------PQSFEEGLLALDGQISAVNLPP  408 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc---------hhhHHHHHHHHHHHHHhcCCcc
Confidence            88889999999999999999999999887754         2455678888888888665543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=8.2e-34  Score=280.03  Aligned_cols=365  Identities=13%  Similarity=0.023  Sum_probs=326.0

Q ss_pred             HHhcCCHHHHHHHHHHhhccC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHH
Q 011845           21 LSKQSKVAEARAIYAKGSQAT--QGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKK   98 (476)
Q Consensus        21 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~   98 (476)
                      +.++.+|+.-.-+|....+..  ...+.......+..+.+.|++++|+..++.++...|.++.+++.+|.+....|++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~   94 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA   94 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence            445666766666665554322  123344556677888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC
Q 011845           99 ARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQAS  178 (476)
Q Consensus        99 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  178 (476)
                      |+..+++++..+|+++.++..+|.++...|++++|+..|++++...|+++.++..++.++...|++++|+..+++++...
T Consensus        95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~  174 (656)
T PRK15174         95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV  174 (656)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 011845          179 PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR-DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWG  257 (476)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  257 (476)
                      |+++..+..++ .+...|++++|+..+++++...|. .......++.++...|++++|+..|++++...|+++.++..+|
T Consensus       175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg  253 (656)
T PRK15174        175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG  253 (656)
T ss_pred             CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            99988877664 478899999999999999998763 3445566788999999999999999999999999999999999


Q ss_pred             HHHHHcCChhH----HHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 011845          258 WMEWKEGNLDT----ARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED  333 (476)
Q Consensus       258 ~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  333 (476)
                      .++...|++++    |+..|++++..+|++..   ++..+|.++...|++++|+..+++++..+|+++.++..++.++..
T Consensus       254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~  330 (656)
T PRK15174        254 LAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ  330 (656)
T ss_pred             HHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999986    89999999999999854   577889999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhhhhhhc---chhhhhhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845          334 QGNSVRAEEIRNLYFQQRTEVV---DDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEP  389 (476)
Q Consensus       334 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  389 (476)
                      .|++++|...++.++...|...   ...+.++...|++++|+..|+++++..|++....
T Consensus       331 ~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~  389 (656)
T PRK15174        331 VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQS  389 (656)
T ss_pred             CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhh
Confidence            9999999999999998777542   3357788999999999999999999999987544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=100.00  E-value=4.8e-31  Score=265.92  Aligned_cols=380  Identities=10%  Similarity=-0.072  Sum_probs=281.7

Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845            8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA   87 (476)
Q Consensus         8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la   87 (476)
                      |-++....-...+....|++++|+..+.++.... |....++..+|.++...|++++|+..|++++..+|.++.++..++
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la   90 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI   90 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4444445555556666666666666666665533 555556666666666666666666666666666666666666666


Q ss_pred             HHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH---
Q 011845           88 VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN---  164 (476)
Q Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~---  164 (476)
                      .++...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|+++.++..++.++...+..   
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A  169 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA  169 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence            6666666666666666666666666666 666666666666666666666666666666666666666665544444   


Q ss_pred             -------------------------------------------HHHHHHHHHHHHcCCCcHH-------HHHHHHHHHHH
Q 011845          165 -------------------------------------------LAARQLFERAVQASPKNRF-------AWHVWGIFEAN  194 (476)
Q Consensus       165 -------------------------------------------~~A~~~~~~a~~~~~~~~~-------~~~~l~~~~~~  194 (476)
                                                                 ++|+..++.+++..|.++.       +.......+..
T Consensus       170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~  249 (765)
T PRK10049        170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA  249 (765)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence                                                       4455555566644333221       11221233467


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCChhHH
Q 011845          195 MGFIDKGKKLLKIGHAVNPRDP-VLLQSLALLEYKYSTANLARKLFRRASEIDPRH----QPVWIAWGWMEWKEGNLDTA  269 (476)
Q Consensus       195 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A  269 (476)
                      .|++++|+..|+++++..|..| .+...+|.++...|++++|+..|++++...|.+    ......++.++...|++++|
T Consensus       250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA  329 (765)
T PRK10049        250 RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA  329 (765)
T ss_pred             hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence            7999999999999998865433 344447999999999999999999999888765    35677788889999999999


Q ss_pred             HHHHHHHHccCCCCh------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCh
Q 011845          270 RELYERALSIDSTTE------------SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNS  337 (476)
Q Consensus       270 ~~~~~~a~~~~~~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  337 (476)
                      +..++++....|...            .....+..++.++...|++++|++.+++++...|++..++..++.++...|++
T Consensus       330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~  409 (765)
T PRK10049        330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP  409 (765)
T ss_pred             HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            999999999877421            11235567799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhh---hcchhhhhhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845          338 VRAEEIRNLYFQQRTE---VVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEP  389 (476)
Q Consensus       338 ~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  389 (476)
                      ++|+..+++++...|+   +....+.++...|++++|...++++++..|+++...
T Consensus       410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            9999999999997775   446778889999999999999999999999998765

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.1e-31  Score=250.65  Aligned_cols=388  Identities=16%  Similarity=0.151  Sum_probs=276.1

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQ--GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH   79 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~   79 (476)
                      ++...+|.||.++..++..++..|+|+.+..+...++....  +.-.+.++.+|+++..+|++++|..+|.++++.++++
T Consensus       261 ~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~  340 (1018)
T KOG2002|consen  261 RAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN  340 (1018)
T ss_pred             HHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence            35567888888888888888888888888888888876541  1234567888888888888888888888888888877


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc----cHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845           80 -IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN----RYEQARNLFRQATKCNPKSCASWIAW  154 (476)
Q Consensus        80 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~~~~~~p~~~~~~~~l  154 (476)
                       .-.++.+|++++..|+++.|+.+|+++++..|++.++...+|.+|...+    ..+.|..++.++++..|.+.++|..+
T Consensus       341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l  420 (1018)
T KOG2002|consen  341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL  420 (1018)
T ss_pred             ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence             6677788888888888888888888888888888888888888887765    56777777777777777776666655


Q ss_pred             HHH--------------------------------------HHHhccHHHHHHHHHHHHHc-----CCCc-----HHHHH
Q 011845          155 SQM--------------------------------------EMQQENNLAARQLFERAVQA-----SPKN-----RFAWH  186 (476)
Q Consensus       155 a~~--------------------------------------~~~~~~~~~A~~~~~~a~~~-----~~~~-----~~~~~  186 (476)
                      +.+                                      ++..|++.+|...|.+++..     +++.     ....+
T Consensus       421 aql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y  500 (1018)
T KOG2002|consen  421 AQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY  500 (1018)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence            555                                      44455555666666555544     1111     12355


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----
Q 011845          187 VWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK----  262 (476)
Q Consensus       187 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----  262 (476)
                      +++.++...++++.|.+.|..+++.+|....++..+|.+....++..+|...+..++..+..++.+|..+|.++..    
T Consensus       501 Nlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~  580 (1018)
T KOG2002|consen  501 NLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW  580 (1018)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence            6666666666666666666666666666666666666555555666666666666666655555544444433221    


Q ss_pred             --------------------------------------------cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH
Q 011845          263 --------------------------------------------EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQ  298 (476)
Q Consensus       263 --------------------------------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~  298 (476)
                                                                  .+.+++|+..|.++++.+|.+-.+   -..+|.++.
T Consensus       581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yA---ANGIgiVLA  657 (1018)
T KOG2002|consen  581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYA---ANGIGIVLA  657 (1018)
T ss_pred             cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhh---ccchhhhhh
Confidence                                                        123445666666666666666332   344567777


Q ss_pred             HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----hhhhcchhhhhhhhcccchHHHH
Q 011845          299 RVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ-----RTEVVDDASWVMGFMDIIDPALD  373 (476)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~A~~  373 (476)
                      ..|++.+|..+|.++.+.-.++.++|.++|.||..+|+|..|+++|+.++..     .+++...++.+++..|.+.+|..
T Consensus       658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~  737 (1018)
T KOG2002|consen  658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE  737 (1018)
T ss_pred             hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence            7777777777777776666666778899999999999999999999988874     44677788899999999999999


Q ss_pred             HHHHHhccccCCCCCCCCC
Q 011845          374 RIKQLLNLEKSSYKEPSAY  392 (476)
Q Consensus       374 ~~~~al~~~p~~~~~~~~~  392 (476)
                      .+..++.+.|.++....+.
T Consensus       738 ~ll~a~~~~p~~~~v~FN~  756 (1018)
T KOG2002|consen  738 ALLKARHLAPSNTSVKFNL  756 (1018)
T ss_pred             HHHHHHHhCCccchHHhHH
Confidence            9999999999988876443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.8e-31  Score=230.91  Aligned_cols=337  Identities=16%  Similarity=0.143  Sum_probs=239.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL   91 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   91 (476)
                      ..+-..|+-+++.|+|++|+++|.++++.. |+.+..+.+++-||...|++++.++...++++++|+...+++..+..+.
T Consensus       116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  116 AALKTKGNKFFRNKKYDEAIKYYTQAIELC-PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE  194 (606)
T ss_pred             HHHHhhhhhhhhcccHHHHHHHHHHHHhcC-CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            456678999999999999999999999998 7779999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHH------------------Hhhcc--------------CCCc--------------------------
Q 011845           92 RQGNIKKARQLLA------------------KGLKF--------------CGGN--------------------------  113 (476)
Q Consensus        92 ~~~~~~~A~~~~~------------------~~~~~--------------~p~~--------------------------  113 (476)
                      .+|++.+|+.-..                  +.++.              .|.-                          
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            9999998875331                  11110              0000                          


Q ss_pred             ---------------------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845          114 ---------------------------------------------------EYIYQTLALLEAKANRYEQARNLFRQATK  142 (476)
Q Consensus       114 ---------------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~  142 (476)
                                                                         ..++...|..++-.|++-.|...|+.++.
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence                                                               01122233344445666667777777777


Q ss_pred             cCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 011845          143 CNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSL  222 (476)
Q Consensus       143 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  222 (476)
                      ++|.+...|+.++.+|...++.++....|.++..++|.++.+|+..|.+++-++++++|+.-|++++.++|.+...+..+
T Consensus       355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl  434 (606)
T KOG0547|consen  355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL  434 (606)
T ss_pred             cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence            77766666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH---HHHHHHHHHH-HH
Q 011845          223 ALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA---ARCLQAWGVL-EQ  298 (476)
Q Consensus       223 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~l~~~-~~  298 (476)
                      +.+.+++++++++...|+.+.+..|+.++++...|.++..+++|++|++.|..++.+.|.....   ...+.+-|.+ ..
T Consensus       435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q  514 (606)
T KOG0547|consen  435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ  514 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence            7777777777777777777777777777777777777777777777777777777776662110   0011111111 11


Q ss_pred             HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          299 RVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      -.+++..|...++++++++|....++..+|.+..+.|+.++|+++|++...
T Consensus       515 wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  515 WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            236677777777777777777777777777777777777777777766655

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-30  Score=244.95  Aligned_cols=386  Identities=18%  Similarity=0.149  Sum_probs=340.5

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA   82 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~   82 (476)
                      .++..|+|...++..|.+.+..|+|..|+.+|++++...|..-++....+|.|+.++|+.+.|+..|+++++++|.+..+
T Consensus       156 Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a  235 (1018)
T KOG2002|consen  156 VLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA  235 (1018)
T ss_pred             HHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence            46789999999999999999999999999999999998866678888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC---CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC---chhHHHHHHH
Q 011845           83 WHGWAVLELRQG---NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK---SCASWIAWSQ  156 (476)
Q Consensus        83 ~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~la~  156 (476)
                      +..||.+-....   .+..++..+.++...+|.+|.++..++..++..|++..+..+...++...-.   -.+.++.+|+
T Consensus       236 lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR  315 (1018)
T KOG2002|consen  236 LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR  315 (1018)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            999998877655   4678999999999999999999999999999999999999999999987633   3456999999


Q ss_pred             HHHHhccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----C
Q 011845          157 MEMQQENNLAARQLFERAVQASPKN-RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS----T  231 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~  231 (476)
                      +|..+|++++|..+|.++++.++++ .-.++.+|..+...|+++.+..+|+++++..|++..+...+|.+|...+    .
T Consensus       316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~  395 (1018)
T KOG2002|consen  316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEK  395 (1018)
T ss_pred             HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHH
Confidence            9999999999999999999999988 7778999999999999999999999999999999999999999999886    5


Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccC--CCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 011845          232 ANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID--STTESAARCLQAWGVLEQRVGNLSAARRL  309 (476)
Q Consensus       232 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  309 (476)
                      .+.|..++.++++..|.+..+|..++.++.... ...++.+|..|+..-  ........++.++|..++..|++.+|...
T Consensus       396 ~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~  474 (1018)
T KOG2002|consen  396 RDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH  474 (1018)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence            688999999999999999999999999987644 445599999887431  11112256789999999999999999999


Q ss_pred             HHHHHhh-----CCCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcc---hhhhhhhhcccchHHHHHHH
Q 011845          310 FRSSLNI-----NSQS-----YITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVD---DASWVMGFMDIIDPALDRIK  376 (476)
Q Consensus       310 ~~~al~~-----~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~A~~~~~  376 (476)
                      |.+++..     +++.     ....++++.++...++++.|.++|..++...|...+   .++.+....+...+|...++
T Consensus       475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk  554 (1018)
T KOG2002|consen  475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLK  554 (1018)
T ss_pred             HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHH
Confidence            9999876     2222     235899999999999999999999999998886554   34445556689999999999


Q ss_pred             HHhccccCCCCCC
Q 011845          377 QLLNLEKSSYKEP  389 (476)
Q Consensus       377 ~al~~~p~~~~~~  389 (476)
                      .++..+..++.++
T Consensus       555 ~~l~~d~~np~ar  567 (1018)
T KOG2002|consen  555 DALNIDSSNPNAR  567 (1018)
T ss_pred             HHHhcccCCcHHH
Confidence            9999999998876

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=100.00  E-value=1.4e-29  Score=255.28  Aligned_cols=346  Identities=8%  Similarity=-0.067  Sum_probs=296.6

Q ss_pred             cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845            4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus         4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      ...+|....++..+|.++...|++++|+..|++++... |.++.++..++.++...|++++|+..+++++..+|++.. +
T Consensus        42 ~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~  119 (765)
T PRK10049         42 RVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-L  119 (765)
T ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-H
Confidence            34577888889999999999999999999999999998 889999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHH-----------------------------
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR-----------------------------  134 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~-----------------------------  134 (476)
                      ..+|.++...|++++|+..++++++..|++..++..++.++...|..++|+                             
T Consensus       120 ~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~  199 (765)
T PRK10049        120 LALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSF  199 (765)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999998887766655444                             


Q ss_pred             -----------------HHHHHHHhcCCCchhH-------HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH-HHHHHHH
Q 011845          135 -----------------NLFRQATKCNPKSCAS-------WIAWSQMEMQQENNLAARQLFERAVQASPKNR-FAWHVWG  189 (476)
Q Consensus       135 -----------------~~~~~~~~~~p~~~~~-------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~  189 (476)
                                       ..++.+++..|.++..       .......+...|++++|+..|+++++..+..+ .+...++
T Consensus       200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la  279 (765)
T PRK10049        200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVA  279 (765)
T ss_pred             ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence                             4444445443333221       11112234677999999999999998864322 2344468


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---------------CH
Q 011845          190 IFEANMGFIDKGKKLLKIGHAVNPRD----PVLLQSLALLEYKYSTANLARKLFRRASEIDPR---------------HQ  250 (476)
Q Consensus       190 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~  250 (476)
                      .++...|++++|+..|++++...|.+    ......++.++...|++++|+..++++....|.               ..
T Consensus       280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~  359 (765)
T PRK10049        280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL  359 (765)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence            99999999999999999999888765    356777888889999999999999999988763               13


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 011845          251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQL  330 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  330 (476)
                      .++..++.++...|++++|+..+++++...|++..   ++..+|.++...|++++|++.+++++..+|++..+++.++.+
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~  436 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT  436 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence            46788999999999999999999999999999954   578889999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhhhhhh
Q 011845          331 EEDQGNSVRAEEIRNLYFQQRTEV  354 (476)
Q Consensus       331 ~~~~g~~~~A~~~~~~~~~~~~~~  354 (476)
                      +...|++++|..+++.++...|+.
T Consensus       437 al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        437 ALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999877753

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=7.6e-30  Score=232.86  Aligned_cols=306  Identities=14%  Similarity=0.147  Sum_probs=249.4

Q ss_pred             hHHHHHHHH--HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845           13 PYVALGKVL--SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE   90 (476)
Q Consensus        13 ~~~~la~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   90 (476)
                      .+..+|..|  ..+-+..+|+..|++.-... ++...+...+|..|+.+++|++|..+|+.+-...|-..+..-.+..++
T Consensus       319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L  397 (638)
T KOG1126|consen  319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL  397 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence            344444444  34556788888888843433 666778888888888888888888888888888887776666677777


Q ss_pred             HHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHH
Q 011845           91 LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQL  170 (476)
Q Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~  170 (476)
                      +...+.-+---+.+..+..+|..++.|..+|.||..+++++.|+++|+++++++|...-+|..+|.-+....+++.|..+
T Consensus       398 WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~  477 (638)
T KOG1126|consen  398 WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS  477 (638)
T ss_pred             HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence            77766665555667777888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 011845          171 FERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ  250 (476)
Q Consensus       171 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  250 (476)
                      |+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+.+|++|+.++|.++
T Consensus       478 fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~  557 (638)
T KOG1126|consen  478 FRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP  557 (638)
T ss_pred             HHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 011845          251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYI  322 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  322 (476)
                      ...+..|.++...+++++|+..+++..++.|+...+   ++.+|.+|.+.|+.+.|+..|.-|+.++|.-..
T Consensus       558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v---~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSV---FALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH---HHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            888888888888888888888888888888887544   666788888888888888888888888886554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=8.7e-28  Score=242.37  Aligned_cols=374  Identities=13%  Similarity=0.010  Sum_probs=308.5

Q ss_pred             cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---H
Q 011845            4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH---I   80 (476)
Q Consensus         4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~   80 (476)
                      +...|.++. ....-......+.+.+|........+.. |.+...+..++....+.|++++|..+|+++....++.   .
T Consensus       336 ~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  413 (987)
T PRK09782        336 LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ  413 (987)
T ss_pred             hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence            344555553 2222222334577888888888877776 7888889999999999999999999999988753221   2


Q ss_pred             HHHHHHHHHHHHhCC-------------------------H---HHHHHHHHHhhccCCC--cHHHHHHHHHHHHHhccH
Q 011845           81 AAWHGWAVLELRQGN-------------------------I---KKARQLLAKGLKFCGG--NEYIYQTLALLEAKANRY  130 (476)
Q Consensus        81 ~~~~~la~~~~~~~~-------------------------~---~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~  130 (476)
                      .....++.+|..++.                         +   ..+...+.+++...|.  ++.++..+|.++.. +++
T Consensus       414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~  492 (987)
T PRK09782        414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP  492 (987)
T ss_pred             HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence            233367777765544                         2   2234445566666677  88999999999987 899


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845          131 EQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       131 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  210 (476)
                      .+|+..+.+++...|++. ....++.++...|++++|+..|++++...|.+ ..+..+|.++...|++++|+.++++++.
T Consensus       493 ~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~  570 (987)
T PRK09782        493 GVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQ  570 (987)
T ss_pred             HHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            999999999999999754 46667778889999999999999987776654 4578889999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHH
Q 011845          211 VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL  290 (476)
Q Consensus       211 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  290 (476)
                      ..|.+...+..++......|++++|+..|+++++.+|+ +..+..+|.++.+.|++++|+..|++++..+|++..   .+
T Consensus       571 l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---a~  646 (987)
T PRK09782        571 RGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---YQ  646 (987)
T ss_pred             cCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HH
Confidence            99988888777777777889999999999999999996 899999999999999999999999999999999964   47


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhccc
Q 011845          291 QAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDI  367 (476)
Q Consensus       291 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~  367 (476)
                      .++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|...+++++...|+   +....|++.....+
T Consensus       647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~  726 (987)
T PRK09782        647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN  726 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence            788999999999999999999999999999999999999999999999999999999998774   45678999999999


Q ss_pred             chHHHHHHHHHhccccCCC
Q 011845          368 IDPALDRIKQLLNLEKSSY  386 (476)
Q Consensus       368 ~~~A~~~~~~al~~~p~~~  386 (476)
                      ++.|.+.+++...++|+..
T Consensus       727 ~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        727 FRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             HHHHHHHHHHHhhcCccch
Confidence            9999999999999999876

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.9e-29  Score=218.86  Aligned_cols=331  Identities=11%  Similarity=0.084  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA  127 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  127 (476)
                      .+-..|.-++..|+|++|+++|..++...|+.+..+.+++-||...|+|++.++...++++++|+...+++..+..+..+
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l  196 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL  196 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence            44567888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHH------------------HHHhc--------------CCCc----------------------------
Q 011845          128 NRYEQARNLFR------------------QATKC--------------NPKS----------------------------  147 (476)
Q Consensus       128 g~~~~A~~~~~------------------~~~~~--------------~p~~----------------------------  147 (476)
                      |++++|+.-..                  +.++.              .|.-                            
T Consensus       197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks  276 (606)
T KOG0547|consen  197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS  276 (606)
T ss_pred             ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence            99999875332                  11111              0000                            


Q ss_pred             -------------------------------------------------hhHHHHHHHHHHHhccHHHHHHHHHHHHHcC
Q 011845          148 -------------------------------------------------CASWIAWSQMEMQQENNLAARQLFERAVQAS  178 (476)
Q Consensus       148 -------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  178 (476)
                                                                       ..++...|..++-.|+.-.|...|+.++.++
T Consensus       277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~  356 (606)
T KOG0547|consen  277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD  356 (606)
T ss_pred             hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence                                                             0112222333344455555555555555555


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845          179 PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGW  258 (476)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  258 (476)
                      |.+...|..++.+|....+.++....|.++..++|.++.+|+..|++++-.+++++|+.-|++++.++|++...+..++.
T Consensus       357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~  436 (606)
T KOG0547|consen  357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC  436 (606)
T ss_pred             cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHH
Q 011845          259 MEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ------SYITWMTWAQLEE  332 (476)
Q Consensus       259 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~  332 (476)
                      +.++.++++++...|+.+....|+.+..   +...|.++...++|++|.+.|.+++.+.|.      ++..+..-+.+..
T Consensus       437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Ev---y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~  513 (606)
T KOG0547|consen  437 ALYRQHKIAESMKTFEEAKKKFPNCPEV---YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL  513 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCchH---HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence            5555555555555555555555555443   222355555555555555555555555555      3322222222222


Q ss_pred             -HcCChHHHHHHHHHHHhhhhhh---cchhhhhhhhcccchHHHHHHHHHhcc
Q 011845          333 -DQGNSVRAEEIRNLYFQQRTEV---VDDASWVMGFMDIIDPALDRIKQLLNL  381 (476)
Q Consensus       333 -~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~  381 (476)
                       -.+++..|..+++++++.+|..   ...+|.+..+.|+.++|+++|+++..+
T Consensus       514 qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  514 QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence             2345555555555555554432   234555555555566666666555544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.4e-29  Score=219.08  Aligned_cols=352  Identities=14%  Similarity=0.093  Sum_probs=294.4

Q ss_pred             ccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH
Q 011845            5 DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN----PYIWQCWAVLENKLGNIGKARELFDASTVADKGHI   80 (476)
Q Consensus         5 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~   80 (476)
                      ++.|+.......+|.+++++.+|.+|+++|+.++...|.-+    ..++.++|..+.+.|+|+.|+..|+.+++..|+..
T Consensus       231 kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~  310 (840)
T KOG2003|consen  231 KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI  310 (840)
T ss_pred             cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH
Confidence            46788888889999999999999999999999998764333    45677888999999999999999999999888655


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhcc--------------CCCcH--------------------------------
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKF--------------CGGNE--------------------------------  114 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------------~p~~~--------------------------------  114 (476)
                      . -+++..|++..|+-++-.+.|.+++.+              +|++.                                
T Consensus       311 a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~ki  389 (840)
T KOG2003|consen  311 A-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKI  389 (840)
T ss_pred             h-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            4 446777888888888888888888764              11110                                


Q ss_pred             ------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHhc---------------------
Q 011845          115 ------------------------------YIYQTLALLEAKANRYEQARNLFRQATKC---------------------  143 (476)
Q Consensus       115 ------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------  143 (476)
                                                    +.-...+.-+.+.|+++.|+++++-.-+.                     
T Consensus       390 iapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqgg  469 (840)
T KOG2003|consen  390 IAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGG  469 (840)
T ss_pred             hccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcc
Confidence                                          00112344567788888887776544333                     


Q ss_pred             ----------------CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          144 ----------------NPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI  207 (476)
Q Consensus       144 ----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  207 (476)
                                      +.-++.+..+.|.+-+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+
T Consensus       470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k  549 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK  549 (840)
T ss_pred             cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence                            2233334445555566678999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHH
Q 011845          208 GHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA  287 (476)
Q Consensus       208 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  287 (476)
                      ...+--++..+++.++.+|....+..+|++++.++..+-|++|.++..+|.+|-+.|+..+|..++-......|.+... 
T Consensus       550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~-  628 (840)
T KOG2003|consen  550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET-  628 (840)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH-
Confidence            9888888999999999999999999999999999999999999999999999999999999999999999999998655 


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhh
Q 011845          288 RCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASW  360 (476)
Q Consensus       288 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  360 (476)
                        ...+|..|....-.++|+.+|+++--+.|+.......++.|+.+.|+|.+|.++|.......|+-...+-.
T Consensus       629 --iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf  699 (840)
T KOG2003|consen  629 --IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF  699 (840)
T ss_pred             --HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence              44559999999999999999999999999999999999999999999999999999999988876655444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=1.2e-27  Score=241.43  Aligned_cols=344  Identities=13%  Similarity=0.052  Sum_probs=300.8

Q ss_pred             ccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC--ChHHHHHHHHHHHHcCC---------------------
Q 011845            5 DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGE--NPYIWQCWAVLENKLGN---------------------   61 (476)
Q Consensus         5 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~---------------------   61 (476)
                      +..|.+.+.+..++....+.|++++|...|+++.......  +..+...++.+|...+.                     
T Consensus       370 ~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  449 (987)
T PRK09782        370 QQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ  449 (987)
T ss_pred             hcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence            3458999999999999999999999999999998742111  23344477777766544                     


Q ss_pred             ----H---HHHHHHHHHHhhcCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845           62 ----I---GKARELFDASTVADKG--HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ  132 (476)
Q Consensus        62 ----~---~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  132 (476)
                          +   ..+...+.+++...|.  ++.+|+.+|.++.. +++.+|+..+.+++...|++. ....++.++...|++++
T Consensus       450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~ee  527 (987)
T PRK09782        450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYAT  527 (987)
T ss_pred             HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHH
Confidence                2   2234444555666677  89999999999987 899999999999999999754 46677888889999999


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845          133 ARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN  212 (476)
Q Consensus       133 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  212 (476)
                      |+..|+++....|. ...+..+|.++...|++++|+.+|+++++..|.....+..++......|++++|+..++++++.+
T Consensus       528 Ai~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~  606 (987)
T PRK09782        528 ALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA  606 (987)
T ss_pred             HHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence            99999998877555 45678899999999999999999999999999988877777777778899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845          213 PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA  292 (476)
Q Consensus       213 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  292 (476)
                      |+ +.++..+|.++.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++..|+++.   ++.+
T Consensus       607 P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~---a~~n  682 (987)
T PRK09782        607 PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA---LIRQ  682 (987)
T ss_pred             CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHH
Confidence            96 9999999999999999999999999999999999999999999999999999999999999999999954   5788


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845          293 WGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV  355 (476)
Q Consensus       293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  355 (476)
                      +|.++...|++++|+.+|+++++++|++..+....+.+.....+++.|.+.+.+.....+...
T Consensus       683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence            899999999999999999999999999999999999999999999999999998887665444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.97  E-value=2.4e-27  Score=223.81  Aligned_cols=299  Identities=17%  Similarity=0.034  Sum_probs=250.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc----HHHHHHH
Q 011845           45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN----EYIYQTL  120 (476)
Q Consensus        45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l  120 (476)
                      .....+..|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...+..    ..++..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            345566678888899999999999999999999999999999999999999999999999988754322    2567888


Q ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHc
Q 011845          121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR-----FAWHVWGIFEANM  195 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~  195 (476)
                      |.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..+++++...|.+.     ..+..++.++...
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  193 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR  193 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999998888888999999999999999999999999988877652     3456788888899


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCChhHHHHHHH
Q 011845          196 GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH-QPVWIAWGWMEWKEGNLDTARELYE  274 (476)
Q Consensus       196 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~  274 (476)
                      |++++|+..++++++..|++..++..+|.++...|++++|+..+++++...|.+ ..++..++.++...|++++|+..++
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~  273 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR  273 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999888899999999999999999999999999888765 3567788999999999999999999


Q ss_pred             HHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--cCChHHHHHHHHHH
Q 011845          275 RALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED--QGNSVRAEEIRNLY  347 (476)
Q Consensus       275 ~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~  347 (476)
                      ++++..|+...    +..++.++...|++++|...++++++..|++......+......  .|+..++..+++..
T Consensus       274 ~~~~~~p~~~~----~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~  344 (389)
T PRK11788        274 RALEEYPGADL----LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL  344 (389)
T ss_pred             HHHHhCCCchH----HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence            99998887632    35678999999999999999999999999887655444443322  45777777766654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.2e-28  Score=225.14  Aligned_cols=302  Identities=16%  Similarity=0.118  Sum_probs=211.6

Q ss_pred             HHHHHHHHHH--HcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845           48 IWQCWAVLEN--KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA  125 (476)
Q Consensus        48 ~~~~la~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  125 (476)
                      ++..+|..+.  .+-+..+|+..|.+.....++...++..+|..|+.+++|++|.++|+.+-+..|-.....-.+..++.
T Consensus       319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW  398 (638)
T KOG1126|consen  319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW  398 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence            3344444443  33355677777777555556656666677777777777777777777777777755554444555555


Q ss_pred             HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 011845          126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLL  205 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  205 (476)
                      .+.+--+---+.+..+..+|+.|+.|..+|.+|..+++.+.|+++|+++++++|....+|..+|.-+....+++.|..+|
T Consensus       399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f  478 (638)
T KOG1126|consen  399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF  478 (638)
T ss_pred             HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence            55554444455566667777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845          206 KIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES  285 (476)
Q Consensus       206 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  285 (476)
                      +.++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+.+|++|+.++|.++.
T Consensus       479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL  558 (638)
T ss_pred             HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777754


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845          286 AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT  352 (476)
Q Consensus       286 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  352 (476)
                      .   .+..|.++...+++++|...+++.-++-|++..+++.+|.+|.+.|+.+.|...|.-+....|
T Consensus       559 ~---~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  559 C---KYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             h---HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            3   456677777777777777777777777777777777777777777777666665554444333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.97  E-value=2.3e-27  Score=223.96  Aligned_cols=300  Identities=15%  Similarity=0.092  Sum_probs=264.3

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc----HHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH----IAAWHG   85 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~   85 (476)
                      .....+.+|..+...|++++|+..|+++++.+ |.++.++..+|.++...|++++|+..+++++...+..    ..++..
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~  112 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE  112 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            34556778999999999999999999999987 8889999999999999999999999999998754322    356789


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh-----HHHHHHHHHHH
Q 011845           86 WAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA-----SWIAWSQMEMQ  160 (476)
Q Consensus        86 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~la~~~~~  160 (476)
                      +|.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+..     .+..+|.++..
T Consensus       113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  192 (389)
T PRK11788        113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA  192 (389)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999998876532     56678999999


Q ss_pred             hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 011845          161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD-PVLLQSLALLEYKYSTANLARKLF  239 (476)
Q Consensus       161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~  239 (476)
                      .|++++|+..|+++++..|++..++..+|.++...|++++|+..+++++...|.+ ..++..++.++...|++++|+..+
T Consensus       193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l  272 (389)
T PRK11788        193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL  272 (389)
T ss_pred             CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988876 456788999999999999999999


Q ss_pred             HHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHh
Q 011845          240 RRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQ---RVGNLSAARRLFRSSLN  315 (476)
Q Consensus       240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~  315 (476)
                      +++++..|+.. .+..++.++...|++++|+..++++++..|++....    .+...+.   ..|+.++++..+++.++
T Consensus       273 ~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~----~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        273 RRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH----RLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             HHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH----HHHHHhhhccCCccchhHHHHHHHHHH
Confidence            99999999875 448899999999999999999999999999875432    2222222   25688898888887765

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-26  Score=202.78  Aligned_cols=362  Identities=14%  Similarity=0.072  Sum_probs=243.0

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc--CcHHHHHHH
Q 011845            9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADK--GHIAAWHGW   86 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l   86 (476)
                      .|+..++..|.++...|....|+..|..++... |-.-.+|..++.+...       ++........-|  .+.-.-+.+
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~  233 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFL  233 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHH
Confidence            345666777777777777777777777777666 6666666666555422       122222222222  222222345


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhcc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHH
Q 011845           87 AVLELRQGNIKKARQLLAKGLKF-CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL  165 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~  165 (476)
                      +.++....+.++++.-++..... .|.+..+-...|.+.....++++|+..|+...+.+|-..+-.-.+..+++-.++-.
T Consensus       234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s  313 (559)
T KOG1155|consen  234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence            66666666777777777777766 67777777778888888888888888888888887766555555555555554444


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 011845          166 AARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEI  245 (476)
Q Consensus       166 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  245 (476)
                      +-.-+.+.+..++.-.++....+|..|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|++|+++
T Consensus       314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi  393 (559)
T KOG1155|consen  314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI  393 (559)
T ss_pred             HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence            44444444555555555566666777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 011845          246 DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWM  325 (476)
Q Consensus       246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  325 (476)
                      +|.+..+|+.+|+.|.-++...=|+-+|+++.+..|.++.   +|..+|.||.+.++.++|+++|++++.....+..++.
T Consensus       394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR---lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~  470 (559)
T KOG1155|consen  394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR---LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV  470 (559)
T ss_pred             CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH---HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence            7777777777777777777777777777777777777743   4556677777777777777777777777777777777


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhh-------hhh---cchhhhhhhhcccchHHHHHHHHHhcc
Q 011845          326 TWAQLEEDQGNSVRAEEIRNLYFQQR-------TEV---VDDASWVMGFMDIIDPALDRIKQLLNL  381 (476)
Q Consensus       326 ~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~  381 (476)
                      .+|.++.+.++.++|...|+++++..       ++.   ..-++.-+...+++++|-.+...++.-
T Consensus       471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            77777777777777777777777632       111   122444555666777776666665544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.97  E-value=4.7e-26  Score=225.40  Aligned_cols=384  Identities=9%  Similarity=-0.046  Sum_probs=302.3

Q ss_pred             cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845            4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus         4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      .-..|+.+...+..+.+.+++|+++.|+..|+++++.. |.++.....++.++...|+.++|+.++++++...|......
T Consensus        27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l  105 (822)
T PRK14574         27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL  105 (822)
T ss_pred             cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence            34578888888999999999999999999999998887 66643333777888888999999999999884444445555


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                      ..+|.++...|++++|+++|+++++.+|+++.++..++.++...++.++|+..++++...+|..... ..++.++...++
T Consensus       106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~  184 (822)
T PRK14574        106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR  184 (822)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch
Confidence            5567788888999999999999999999998888888888888999999999999988888875444 555666666777


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH----------------------------------------
Q 011845          164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK----------------------------------------  203 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----------------------------------------  203 (476)
                      ..+|+..++++++.+|++..++..+..++...|-...|.+                                        
T Consensus       185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~  264 (822)
T PRK14574        185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF  264 (822)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            7779999999998888887776665555544443322222                                        


Q ss_pred             --------HHHHHHh---cCCC---------------------------------------CHHHHHHHHHHHHHcCCHH
Q 011845          204 --------LLKIGHA---VNPR---------------------------------------DPVLLQSLALLEYKYSTAN  233 (476)
Q Consensus       204 --------~~~~~~~---~~~~---------------------------------------~~~~~~~la~~~~~~~~~~  233 (476)
                              .++..+.   ..|.                                       -+.+....|..|...++++
T Consensus       265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~  344 (822)
T PRK14574        265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE  344 (822)
T ss_pred             HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence                    2222222   1121                                       1225566788899999999


Q ss_pred             HHHHHHHHHhccCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC------------CChhHHHHHHHHHH
Q 011845          234 LARKLFRRASEIDP------RHQPVWIAWGWMEWKEGNLDTARELYERALSIDS------------TTESAARCLQAWGV  295 (476)
Q Consensus       234 ~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------------~~~~~~~~~~~l~~  295 (476)
                      +|+.+|.+++...|      .+......|..++...+++++|..++++..+..|            .++........++.
T Consensus       345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~  424 (822)
T PRK14574        345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ  424 (822)
T ss_pred             HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence            99999999987653      2333356788889999999999999999988555            23333456667799


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhcccchHHH
Q 011845          296 LEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDIIDPAL  372 (476)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~  372 (476)
                      ++...|++.+|.+.+++.+...|.|..++..+|.++...|.+.+|...++.+....|.   +....+.++..+|++.+|.
T Consensus       425 ~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~  504 (822)
T PRK14574        425 SLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME  504 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence            9999999999999999999999999999999999999999999999999888776664   3457788889999999999


Q ss_pred             HHHHHHhccccCCCCCC
Q 011845          373 DRIKQLLNLEKSSYKEP  389 (476)
Q Consensus       373 ~~~~~al~~~p~~~~~~  389 (476)
                      ...+.+++..|+++...
T Consensus       505 ~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        505 LLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             HHHHHHHhhCCCchhHH
Confidence            99999999999998665

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.96  E-value=1.2e-25  Score=204.24  Aligned_cols=340  Identities=21%  Similarity=0.273  Sum_probs=266.6

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE   90 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   90 (476)
                      ...|..-++.+...+-++-|+.+|..+++.. |.+..+|...+..-...|..++-..+|++++...|.....|...+..+
T Consensus       516 ~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~  594 (913)
T KOG0495|consen  516 KSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK  594 (913)
T ss_pred             HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence            3456677777777777888888888888777 777777877777777778888888888888887787777788888888


Q ss_pred             HHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHH
Q 011845           91 LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQL  170 (476)
Q Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~  170 (476)
                      ...|+...|..++.++++.+|++.++|+....+.....+++.|..+|.++....| ...+|+..+.+...+++.++|+.+
T Consensus       595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rl  673 (913)
T KOG0495|consen  595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRL  673 (913)
T ss_pred             HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHH
Confidence            7888888888888888888888878888777777778888888888888777655 356777777777777888888888


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 011845          171 FERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ  250 (476)
Q Consensus       171 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  250 (476)
                      ++++++..|.....|..+|.++.+.++.+.|...|...++..|..+..|..++.+-.+.|+..+|..+++++.-.+|.+.
T Consensus       674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA  753 (913)
T ss_pred             HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH---------------------------HHHHHHHHHHHHHhCCH
Q 011845          251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA---------------------------ARCLQAWGVLEQRVGNL  303 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------------------------~~~~~~l~~~~~~~g~~  303 (476)
                      ..|.....+-.+.|+.+.|.....++++..|++...                           ..++...|..+....++
T Consensus       754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~  833 (913)
T KOG0495|consen  754 LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKI  833 (913)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence            888877777788888888888888887777765432                           34566777888888888


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845          304 SAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT  352 (476)
Q Consensus       304 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  352 (476)
                      ++|.++|.++++.+|++.++|..+..++.+.|.-++-.+++.++....|
T Consensus       834 ~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP  882 (913)
T KOG0495|consen  834 EKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP  882 (913)
T ss_pred             HHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence            8888888888888888888888888888888887777777777665444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.96  E-value=2.3e-25  Score=209.91  Aligned_cols=367  Identities=14%  Similarity=0.093  Sum_probs=305.0

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE   90 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   90 (476)
                      ...++..|+.++..|++++|..++..+++.. |.++.+|+.+|.+|.+.|+.+++...+-.+--++|.+.+.|..++...
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            4567778888999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHhccHH
Q 011845           91 LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS-----CASWIAWSQMEMQQENNL  165 (476)
Q Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~~~~~  165 (476)
                      .++|++.+|.-+|.++++.+|.+.......+.+|.++|+...|...|.+++...|..     .......+..+...++-+
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e  297 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE  297 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999999999999999999999999999999999999999999999832     123345577788888889


Q ss_pred             HHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC--------------------------C
Q 011845          166 AARQLFERAVQASP--KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV--NPR--------------------------D  215 (476)
Q Consensus       166 ~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~--------------------------~  215 (476)
                      .|++.++.++....  ...+.+..++.++.....++.|..........  .++                          +
T Consensus       298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~  377 (895)
T KOG2076|consen  298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD  377 (895)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence            99999999998332  23455678889999999999998888766541  000                          1


Q ss_pred             HHH-HHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHH
Q 011845          216 PVL-LQSLALLEYKYSTANLARKLFRRASEIDP-RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW  293 (476)
Q Consensus       216 ~~~-~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l  293 (476)
                      ..+ ...++.+..+.++..+++..+..--...| +.+..+..++.++...|++.+|+.+|..+....+...  ..+|..+
T Consensus       378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~  455 (895)
T KOG2076|consen  378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--AFVWYKL  455 (895)
T ss_pred             chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--hhhhHHH
Confidence            112 55566666666666666666554433334 4568899999999999999999999999998876665  3478899


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh------------hhcchhhhh
Q 011845          294 GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT------------EVVDDASWV  361 (476)
Q Consensus       294 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~~~~~  361 (476)
                      |.||..+|.+++|+++|++++...|++.++...|+.++.++|++++|.+.++.....++            .+......+
T Consensus       456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~  535 (895)
T KOG2076|consen  456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI  535 (895)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888554321            233456678


Q ss_pred             hhhcccchHHHHHHHHHhc
Q 011845          362 MGFMDIIDPALDRIKQLLN  380 (476)
Q Consensus       362 ~~~~g~~~~A~~~~~~al~  380 (476)
                      +...|+.++-+.....++.
T Consensus       536 l~~~gk~E~fi~t~~~Lv~  554 (895)
T KOG2076|consen  536 LFQVGKREEFINTASTLVD  554 (895)
T ss_pred             HHHhhhHHHHHHHHHHHHH
Confidence            8889988886665544443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.5e-25  Score=194.55  Aligned_cols=336  Identities=15%  Similarity=0.103  Sum_probs=244.0

Q ss_pred             cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CcCcH
Q 011845            4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQG--ENPYIWQCWAVLENKLGNIGKARELFDASTVA-DKGHI   80 (476)
Q Consensus         4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~   80 (476)
                      +...|-+..+|..|+.+...   .+    .....+... |  .+.-.-..++.++....+.++++.-++..... .|.+.
T Consensus       191 v~~~P~~W~AWleL~~lit~---~e----~~~~l~~~l-~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~  262 (559)
T KOG1155|consen  191 VNRYPWFWSAWLELSELITD---IE----ILSILVVGL-PSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSM  262 (559)
T ss_pred             HhcCCcchHHHHHHHHhhch---HH----HHHHHHhcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccH
Confidence            34457777788777766432   22    222222222 2  22333345666777777788888888777766 66676


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ  160 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  160 (476)
                      -.-...|.+...+.++++|+..|+.+.+.+|-...-.-.+..++.-.++-.+-.-+.+.+..++.--++....+|..|..
T Consensus       263 ~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSl  342 (559)
T KOG1155|consen  263 YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSL  342 (559)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHH
Confidence            66677788888888888888888888888876555555555555555554444455566666666667777777888888


Q ss_pred             hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR  240 (476)
Q Consensus       161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  240 (476)
                      .++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|+++++++|.+..+|+.+|+.|.-++.+.=|+-+|+
T Consensus       343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq  422 (559)
T KOG1155|consen  343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ  422 (559)
T ss_pred             HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----
Q 011845          241 RASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLN-----  315 (476)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----  315 (476)
                      +++...|+++..|..+|.+|.+.++.++|+.+|.+++.....+..   .+..+|.+|.+.++.++|..+|++.++     
T Consensus       423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~---~l~~LakLye~l~d~~eAa~~yek~v~~~~~e  499 (559)
T KOG1155|consen  423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS---ALVRLAKLYEELKDLNEAAQYYEKYVEVSELE  499 (559)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence            888888888888888888888888888888888888877665533   467778888888888888888888777     


Q ss_pred             --hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845          316 --INSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ  350 (476)
Q Consensus       316 --~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  350 (476)
                        ..|+...+...|+..+.+.+++++|......+..-
T Consensus       500 g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  500 GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence              34555566777888888888888887766655543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.96  E-value=8.6e-25  Score=198.67  Aligned_cols=380  Identities=18%  Similarity=0.259  Sum_probs=274.3

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh---------
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDAST---------   73 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---------   73 (476)
                      +++.-|.+.+.|..+++.    .-|+.|..++.++-+.- |.++.+|..-+.+-...|+.+....+..+.+         
T Consensus       402 Aveccp~s~dLwlAlarL----etYenAkkvLNkaRe~i-ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~  476 (913)
T KOG0495|consen  402 AVECCPQSMDLWLALARL----ETYENAKKVLNKAREII-PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE  476 (913)
T ss_pred             HHHhccchHHHHHHHHHH----HHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee
Confidence            445556666666655543    34666666666665555 6666666666666666666555444444432         


Q ss_pred             ------------------------------hc---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHH
Q 011845           74 ------------------------------VA---DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL  120 (476)
Q Consensus        74 ------------------------------~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  120 (476)
                                                    ..   ..+....|..-+..+.+.+-++-|+.+|..+++.+|....+|...
T Consensus       477 i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra  556 (913)
T KOG0495|consen  477 INRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRA  556 (913)
T ss_pred             ecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHH
Confidence                                          11   122346677777777777777777777777777777777777777


Q ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 011845          121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDK  200 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (476)
                      +..-...|..++-..++++++...|.....|...+..+...|+...|..++.++++.+|++.++|+.-..+.....+++.
T Consensus       557 ~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~er  636 (913)
T KOG0495|consen  557 AMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELER  636 (913)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccC
Q 011845          201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID  280 (476)
Q Consensus       201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  280 (476)
                      |..+|.++....| ...+|+..+.+...+++.++|+.+++++++..|+....|..+|.++.++++.+.|...|...++..
T Consensus       637 aR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c  715 (913)
T KOG0495|consen  637 ARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC  715 (913)
T ss_pred             HHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence            7777777776655 456777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh--------
Q 011845          281 STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT--------  352 (476)
Q Consensus       281 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------  352 (476)
                      |.....   |..++.+-.+.|+.-.|..+++++.-.+|.+...|....++..+.|+.+.|..++.++++..|        
T Consensus       716 P~~ipL---WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE  792 (913)
T KOG0495|consen  716 PNSIPL---WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAE  792 (913)
T ss_pred             CCCchH---HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence            777544   455577777777777777777777777777777777777777777777777777777776333        


Q ss_pred             -------------------------hhcchhhhhhhhcccchHHHHHHHHHhccccCCCCCCCC
Q 011845          353 -------------------------EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSA  391 (476)
Q Consensus       353 -------------------------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  391 (476)
                                               .+....+..+....++++|.++|.++++++|++++++.-
T Consensus       793 aI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~  856 (913)
T KOG0495|consen  793 AIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW  856 (913)
T ss_pred             HHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence                                     233345556666778999999999999999999998743

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.95  E-value=2.7e-25  Score=187.15  Aligned_cols=317  Identities=13%  Similarity=0.059  Sum_probs=250.0

Q ss_pred             CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHH
Q 011845            7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGW   86 (476)
Q Consensus         7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l   86 (476)
                      +|.+++-++.+|..++..|++.+|+..|..+++.+ |++..+++..|.+|..+|+..-|+.-+.+++++.|+...+....
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            45667778888888888888888888888888887 88888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhccCCCcH---HHH------------HHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHH
Q 011845           87 AVLELRQGNIKKARQLLAKGLKFCGGNE---YIY------------QTLALLEAKANRYEQARNLFRQATKCNPKSCASW  151 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  151 (476)
                      |.+++++|.+++|..-|+.+++.+|.+.   ++.            ......+...|+...|+......+++.|-+...+
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~  192 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR  192 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence            8888888888888888888888887542   222            2223344456788888888888888888888888


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---------
Q 011845          152 IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSL---------  222 (476)
Q Consensus       152 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---------  222 (476)
                      ...+.+|...|++..|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-.+         
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~  272 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS  272 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888875543221         


Q ss_pred             ---HHHHHHcCCHHHHHHHHHHHhccCCCCHHH----HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 011845          223 ---ALLEYKYSTANLARKLFRRASEIDPRHQPV----WIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGV  295 (476)
Q Consensus       223 ---a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~  295 (476)
                         +.-....++|.++++..++.++.+|..+.+    +..+..|+...|++.+|+..+.+++..+|++.   .++...+.
T Consensus       273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv---~~l~dRAe  349 (504)
T KOG0624|consen  273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV---QVLCDRAE  349 (504)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH---HHHHHHHH
Confidence               233445677788888888888888874433    33466677777888888888888888888874   34777788


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 011845          296 LEQRVGNLSAARRLFRSSLNINSQSYITWMTW  327 (476)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  327 (476)
                      +|.-...|+.|+.-|+++.+.++++..+...+
T Consensus       350 A~l~dE~YD~AI~dye~A~e~n~sn~~~reGl  381 (504)
T KOG0624|consen  350 AYLGDEMYDDAIHDYEKALELNESNTRAREGL  381 (504)
T ss_pred             HHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            88888888888888888888888877665443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.4e-25  Score=197.23  Aligned_cols=340  Identities=15%  Similarity=0.080  Sum_probs=287.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH-----------------cCCHHHHHHHHHHHh-
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENK-----------------LGNIGKARELFDAST-   73 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~-----------------~g~~~~A~~~~~~~~-   73 (476)
                      ..++..|.+|....++++|...|.+++..+ ....+....+....+-                 .+...+-++.+-++. 
T Consensus       142 sic~lRgk~y~al~n~~~ar~~Y~~Al~~D-~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~  220 (611)
T KOG1173|consen  142 SICYLRGKVYVALDNREEARDKYKEALLAD-AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKL  220 (611)
T ss_pred             ceeeeeeehhhhhccHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhh
Confidence            456778999999999999999999999876 5554444433322211                 111111112111111 


Q ss_pred             ---------hcC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 011845           74 ---------VAD--------KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNL  136 (476)
Q Consensus        74 ---------~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  136 (476)
                               ...        .++++.....+..++..+++.+..++.+..++.+|-+..++.....++...|+..+-..+
T Consensus       221 ~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~l  300 (611)
T KOG1173|consen  221 CKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLL  300 (611)
T ss_pred             hhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHH
Confidence                     111        234677778899999999999999999999999999888776655699999999998888


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 011845          137 FRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP  216 (476)
Q Consensus       137 ~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  216 (476)
                      -.+.+...|+.+..|+..|..|...|++.+|.++|.++..++|....+|..+|..+...|+.++|+.+|..|-+..|...
T Consensus       301 sh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h  380 (611)
T KOG1173|consen  301 SHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH  380 (611)
T ss_pred             HHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc----CCCChhHHHHHHH
Q 011845          217 VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI----DSTTESAARCLQA  292 (476)
Q Consensus       217 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~  292 (476)
                      .....+|.-|...++++-|..+|.+++.+.|.+|.++..+|.+.+..+.|.+|..+|+.++..    .+......-++.+
T Consensus       381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N  460 (611)
T KOG1173|consen  381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN  460 (611)
T ss_pred             chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999843    3333223346789


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845          293 WGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT  352 (476)
Q Consensus       293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  352 (476)
                      +|.++.+++.+++|+.+|++++.+.|.+..++..+|.++..+|+++.|++.|.+++-..|
T Consensus       461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p  520 (611)
T KOG1173|consen  461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP  520 (611)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999988877766544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.9e-23  Score=187.02  Aligned_cols=448  Identities=15%  Similarity=0.064  Sum_probs=291.0

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL   91 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   91 (476)
                      ..++.--..+...|+|++|++...+++... |++..++.....++.+.++|++|+.+.+.-......+ ...+..+.|++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Y   90 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEY   90 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHH
Confidence            345555567778899999999999999888 8899999999999999999999996555433221111 22368899999


Q ss_pred             HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-------------------------
Q 011845           92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK-------------------------  146 (476)
Q Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------------------------  146 (476)
                      +++..++|+..++   ..++.+..+....|.+++++|+|++|..+|+..++.+.+                         
T Consensus        91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v  167 (652)
T KOG2376|consen   91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV  167 (652)
T ss_pred             HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence            9999999999998   345556678888899999999999999999988655322                         


Q ss_pred             ------chhHHHHHHHHHHHhccHHHHHHHHHHHHHcC--------CC--c-----HHHHHHHHHHHHHcCCHHHHHHHH
Q 011845          147 ------SCASWIAWSQMEMQQENNLAARQLFERAVQAS--------PK--N-----RFAWHVWGIFEANMGFIDKGKKLL  205 (476)
Q Consensus       147 ------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~--~-----~~~~~~l~~~~~~~~~~~~A~~~~  205 (476)
                            +.+.+++.+.++...|+|.+|++.+++++.+.        .+  .     ..+...++.++..+|+.++|...|
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence                  23457788889999999999999999995431        11  1     245678899999999999999999


Q ss_pred             HHHHhcCCCCHHH-------------------------------------------------HHHHHHHHHHcCCHHHHH
Q 011845          206 KIGHAVNPRDPVL-------------------------------------------------LQSLALLEYKYSTANLAR  236 (476)
Q Consensus       206 ~~~~~~~~~~~~~-------------------------------------------------~~~la~~~~~~~~~~~A~  236 (476)
                      ...+..+|.+...                                                 +.+.+.+.+..+..+.+.
T Consensus       248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r  327 (652)
T KOG2376|consen  248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR  327 (652)
T ss_pred             HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            9998877655321                                                 112222222223333333


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--
Q 011845          237 KLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSL--  314 (476)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--  314 (476)
                      +.....-...|....--........+...+.+|.+++....+..|.+...  +...++.+....|+++.|++.+...+  
T Consensus       328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~--v~L~~aQl~is~gn~~~A~~il~~~~~~  405 (652)
T KOG2376|consen  328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKV--VLLLRAQLKISQGNPEVALEILSLFLES  405 (652)
T ss_pred             HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence            33333222333322222223333333347888999999998888887433  45667889999999999999998333  


Q ss_pred             ------hhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh----------hcchhhhhhhhcccchHHHHHHHHH
Q 011845          315 ------NINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE----------VVDDASWVMGFMDIIDPALDRIKQL  378 (476)
Q Consensus       315 ------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~A~~~~~~a  378 (476)
                            +. -..+.+-..+..++.+.++.+.|..++..++.-+..          .+...+..-...|+-++|...+++.
T Consensus       406 ~~ss~~~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel  484 (652)
T KOG2376|consen  406 WKSSILEA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL  484 (652)
T ss_pred             hhhhhhhh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence                  22 223445566677788888888888888888763331          1122333444459999999999999


Q ss_pred             hccccCCCCCCCCC------------------CCCCCCCC--ch---hhhcCcCCCCc----cCCcccccCCCChhHHH-
Q 011845          379 LNLEKSSYKEPSAY------------------SPGDNEST--DD---EASVSRYSGLY----VGNDLESASGFDLDDFI-  430 (476)
Q Consensus       379 l~~~p~~~~~~~~~------------------~~~~~~~~--~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-  430 (476)
                      ++.+|++.......                  +.......  +.   +.+.+...+..    ...........++.--. 
T Consensus       485 ~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~L~p~~~l~~vdVd~LE~s~ga~~~~~~k~ta~S~~~~~~~~~~kKKk~  564 (652)
T KOG2376|consen  485 VKFNPNDTDLLVQLVTAYARLDPEKAESLSKKLPPLKGLKAVDVDALEKSDGAKYSEAYKKTAVSQVEEKKSKELKKKKK  564 (652)
T ss_pred             HHhCCchHHHHHHHHHHHHhcCHHHHHHHhhcCCCcccchhcCchHhhhccCcchhhhhccccccchhhccchhhhhhcc
Confidence            99999876654211                  00000000  00   00000000000    00000001111111111 


Q ss_pred             hhhcCCCccccchhccccCCCcccccccCccccccCCCcch
Q 011845          431 RNKLNLDPDQLDVLLEKTSNPSVVRKVNYPRRRIFRPEDKT  471 (476)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (476)
                      +.+.+.+|.+    +.+...|+|+||+|.++|+.|||++|.
T Consensus       565 rKrkgk~pkn----yn~~~tPDPERWLP~reRS~yr~KrK~  601 (652)
T KOG2376|consen  565 RKRKGKLPKN----YNPKVTPDPERWLPRRERSTYRPKRKG  601 (652)
T ss_pred             cccccCCccc----CCCCCCCChhhcccchhccccCccccc
Confidence            3455666665    446678999999999999999999994

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.95  E-value=2.4e-23  Score=206.30  Aligned_cols=349  Identities=12%  Similarity=-0.022  Sum_probs=281.1

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      ++++.+|+++.....++.++...|+.++|+.++++++... +........+|.++...|++++|+++|+++++.+|+++.
T Consensus        59 qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~  137 (822)
T PRK14574         59 EESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD  137 (822)
T ss_pred             HHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence            4678899986554488888888999999999999998322 344445555588999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      ++..++..+...++.++|+..++++...+|.+... ..++.++...++..+|+..++++++.+|++..++..+..++...
T Consensus       138 ~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~  216 (822)
T PRK14574        138 LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN  216 (822)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999986554 66677776678887799999999999999887766555544443


Q ss_pred             ccHH------------------------------------------------HHHHHHHHHHH---cCCC----------
Q 011845          162 ENNL------------------------------------------------AARQLFERAVQ---ASPK----------  180 (476)
Q Consensus       162 ~~~~------------------------------------------------~A~~~~~~a~~---~~~~----------  180 (476)
                      |-..                                                .|+..++..+.   ..|.          
T Consensus       217 ~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~  296 (822)
T PRK14574        217 RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARI  296 (822)
T ss_pred             CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHH
Confidence            3221                                                22333333333   1121          


Q ss_pred             -----------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHH
Q 011845          181 -----------------------------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNP------RDPVLLQSLALL  225 (476)
Q Consensus       181 -----------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~  225 (476)
                                                   ...+....|..|...++.++|+.+|.+++...|      .+......|...
T Consensus       297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA  376 (822)
T PRK14574        297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS  376 (822)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence                                         112344677888899999999999999987653      233345778889


Q ss_pred             HHHcCCHHHHHHHHHHHhccCC---------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHH
Q 011845          226 EYKYSTANLARKLFRRASEIDP---------------RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL  290 (476)
Q Consensus       226 ~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  290 (476)
                      +...+++++|..++++..+..|               +.......++.++...|++.+|.+.+++.+...|.+..   ++
T Consensus       377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~---l~  453 (822)
T PRK14574        377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQN---LR  453 (822)
T ss_pred             HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Confidence            9999999999999999987544               23356777899999999999999999999999999965   46


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845          291 QAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV  355 (476)
Q Consensus       291 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  355 (476)
                      ..+|.++...|.+.+|...++.+..++|++..+...++.+...+|++.+|..+.+.+....|+-.
T Consensus       454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~  518 (822)
T PRK14574        454 IALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI  518 (822)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence            77899999999999999999999999999999999999999999999999999999988877654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.94  E-value=5.1e-27  Score=210.02  Aligned_cols=270  Identities=21%  Similarity=0.294  Sum_probs=102.2

Q ss_pred             ccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845            5 DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQAT-QGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus         5 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      +..|.  ...+.+|.+++..|++++|++++.+.+... +|.++..|..+|.+....++++.|+..|++++..++.++..+
T Consensus         4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~   81 (280)
T PF13429_consen    4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY   81 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34455  233466788888888888888886655444 467777888888888888888888888888887777777777


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHh
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN--PKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~  161 (476)
                      ..++.+ ...+++++|+.+++++.+.. .++..+...+.++...++++++...++++....  +.++..|..+|.++.+.
T Consensus        82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~  159 (280)
T PF13429_consen   82 ERLIQL-LQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL  159 (280)
T ss_dssp             --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred             cccccc-cccccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence            777777 67788888888877777655 345566667777777788888888877766544  55667777788888888


Q ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR  241 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  241 (476)
                      |++++|+..|+++++.+|+++.+...++.++...|+++++...+.......|.++..+..+|.++...|++++|+.+|++
T Consensus       160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence            88888888888888888888777777787777778888777777777777777777777778888888888888888888


Q ss_pred             HhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845          242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALS  278 (476)
Q Consensus       242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  278 (476)
                      +++..|+++.++..+|.++...|+.++|..++++++.
T Consensus       240 ~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  240 ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence            8877888877778888888888888888777777654

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.94  E-value=1.8e-22  Score=205.50  Aligned_cols=338  Identities=12%  Similarity=0.037  Sum_probs=254.5

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc-CcHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADK-GHIAAWHGWAV   88 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~   88 (476)
                      +...|..+...+...|++++|..+|+++.+.....+...|..+...|.+.|+.++|..+|+++..... .+...|..+..
T Consensus       436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~  515 (1060)
T PLN03218        436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID  515 (1060)
T ss_pred             CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            44566777777888888888888888887776566778888888888888888888888888876543 25677888888


Q ss_pred             HHHHhCCHHHHHHHHHHhhccC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHhcc
Q 011845           89 LELRQGNIKKARQLLAKGLKFC-GGNEYIYQTLALLEAKANRYEQARNLFRQATKC----NPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~~~  163 (476)
                      .|.+.|++++|+.+|.++.... ..+..+|..+...|.+.|++++|.++|.++...    .| +..+|..+...|.+.|+
T Consensus       516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~  594 (1060)
T PLN03218        516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQ  594 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCC
Confidence            8888888888888888876543 235677888888888888888888888888652    23 35677778888888888


Q ss_pred             HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          164 NLAARQLFERAVQAS-PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN-PRDPVLLQSLALLEYKYSTANLARKLFRR  241 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  241 (476)
                      +++|.++|+.+.+.. +.+...|..+...|.+.|++++|..+|.++.... ..+...+..+...+.+.|++++|.++++.
T Consensus       595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e  674 (1060)
T PLN03218        595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD  674 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            888888888887765 4466778888888888888888888888887652 22466777888888888888888888888


Q ss_pred             HhccC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CC
Q 011845          242 ASEID-PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN-SQ  319 (476)
Q Consensus       242 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~  319 (476)
                      +.+.. +.+...+..+...|.+.|++++|..+|+++........  ...|..+...|.+.|++++|.++|+++.... ..
T Consensus       675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P  752 (1060)
T PLN03218        675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALITALCEGNQLPKALEVLSEMKRLGLCP  752 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            87653 33567788888888888888888888888765422211  2346677888888888888888888876542 23


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845          320 SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ  350 (476)
Q Consensus       320 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  350 (476)
                      +..++..+...+.+.|++++|..++..+.+.
T Consensus       753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        753 NTITYSILLVASERKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            4556777778888888888888888887764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.94  E-value=3.3e-24  Score=180.65  Aligned_cols=310  Identities=14%  Similarity=0.039  Sum_probs=277.5

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845           43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL  122 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~  122 (476)
                      |.+..-.+.+|.-++..|++..|+..|..+++.+|++..+++..|.+|+..|+-.-|+.-+.+++++.|+...+....|.
T Consensus        35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence            56677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccHHHHHHHHHHHHhcCCCchh---HH------------HHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHH
Q 011845          123 LEAKANRYEQARNLFRQATKCNPKSCA---SW------------IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHV  187 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~------------~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  187 (476)
                      ++.++|++++|..-|+.+++.+|++..   +.            ......+...|+...|+......+++.|-+...+..
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~  194 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA  194 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence            999999999999999999999985532   22            222334556789999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH------------
Q 011845          188 WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIA------------  255 (476)
Q Consensus       188 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------  255 (476)
                      .+.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|+.-..+-.            
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le  274 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE  274 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999987543321            


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHccCCCChhH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 011845          256 WGWMEWKEGNLDTARELYERALSIDSTTESA-ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQ  334 (476)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  334 (476)
                      -+......++|.++++..++.++.+|..... ...+..+..|+...|++.+|+..+.+++..+|++..++...+..|.-.
T Consensus       275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d  354 (504)
T KOG0624|consen  275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD  354 (504)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence            1334556789999999999999999984332 334455688999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhhh
Q 011845          335 GNSVRAEEIRNLYFQQRT  352 (476)
Q Consensus       335 g~~~~A~~~~~~~~~~~~  352 (476)
                      ..|+.|+.-|+.+.+..+
T Consensus       355 E~YD~AI~dye~A~e~n~  372 (504)
T KOG0624|consen  355 EMYDDAIHDYEKALELNE  372 (504)
T ss_pred             HHHHHHHHHHHHHHhcCc
Confidence            999999999999987444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=8.3e-24  Score=188.98  Aligned_cols=374  Identities=13%  Similarity=0.093  Sum_probs=259.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ   93 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   93 (476)
                      ....|...+..|+|+.|+.+|..++..+ |.+...+.+...+|...|+|++|++--.+.++++|..+..|..+|..+.-.
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l   83 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL   83 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence            4567889999999999999999999999 668889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc------------------------HHHHHHHHHHHHhcCCCchh
Q 011845           94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR------------------------YEQARNLFRQATKCNPKSCA  149 (476)
Q Consensus        94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~~~~~~p~~~~  149 (476)
                      |+|++|+..|.+.++.+|++..+...++.++...-.                        .+.+.....+.+..+|.+..
T Consensus        84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            999999999999999999999999888888722200                        01111111222222222211


Q ss_pred             HHHHHHHHHHHhccHHHHH--HHHHHHHH-----cCCC------------c---------HHHHHHHHHHHHHcCCHHHH
Q 011845          150 SWIAWSQMEMQQENNLAAR--QLFERAVQ-----ASPK------------N---------RFAWHVWGIFEANMGFIDKG  201 (476)
Q Consensus       150 ~~~~la~~~~~~~~~~~A~--~~~~~a~~-----~~~~------------~---------~~~~~~l~~~~~~~~~~~~A  201 (476)
                      .+..--.+....|..-..-  ..+.....     ..|.            .         ......+|.......++..|
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence            1110000000000000000  00000000     0010            0         11234566666666666667


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-------HHHHHHHHHHHHcCChhHHHHHHH
Q 011845          202 KKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ-------PVWIAWGWMEWKEGNLDTARELYE  274 (476)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~  274 (476)
                      ++.|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++......       .....+|..+...++++.|+.+|+
T Consensus       244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~  322 (539)
T KOG0548|consen  244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ  322 (539)
T ss_pred             HHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence            77777766666 5666666666666666666666666666655443221       122234455556666666666666


Q ss_pred             HHHccCCCCh-----------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845          275 RALSIDSTTE-----------------------SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLE  331 (476)
Q Consensus       275 ~a~~~~~~~~-----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  331 (476)
                      +++.......                       ....-...-|..++..|+|..|+..|.+++..+|+++..+.+.+.||
T Consensus       323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~  402 (539)
T KOG0548|consen  323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY  402 (539)
T ss_pred             HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            6665432210                       01222334488999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhhhhhh---cchhhhhhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845          332 EDQGNSVRAEEIRNLYFQQRTEV---VDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEP  389 (476)
Q Consensus       332 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  389 (476)
                      .++|.+..|+.-.+.+++..|..   +...|.++..+.+|++|++.|+++++++|++....
T Consensus       403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence            99999999999999999877754   45678899999999999999999999999876654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.8e-24  Score=191.81  Aligned_cols=285  Identities=18%  Similarity=0.194  Sum_probs=260.8

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845           44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL  123 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~  123 (476)
                      .++++....+..++..+++.+..++++..++.+|-+...+.....++...|+..+-..+-.+++...|+.+..|+..|..
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y  321 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY  321 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence            46778888899999999999999999999999999888777655599999999888888889999999999999999999


Q ss_pred             HHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 011845          124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK  203 (476)
Q Consensus       124 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  203 (476)
                      |...|++.+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|.+.++++-|..
T Consensus       322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~  401 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK  401 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888899999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----C---CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845          204 LLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID----P---RHQPVWIAWGWMEWKEGNLDTARELYERA  276 (476)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (476)
                      .|.+++.+.|.+|.++..+|.+.+..+.+.+|..+|+.++..-    +   .-...+.++|.++.+.+.+++|+..|+++
T Consensus       402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a  481 (611)
T KOG1173|consen  402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA  481 (611)
T ss_pred             HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998432    2   23356899999999999999999999999


Q ss_pred             HccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845          277 LSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLE  331 (476)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  331 (476)
                      +.+.|.+..   .+..+|.+|..+|+++.|+++|.++|.+.|++..+--.|+.+.
T Consensus       482 L~l~~k~~~---~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  482 LLLSPKDAS---THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHcCCCchh---HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            999999954   5778899999999999999999999999999987666555443

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.94  E-value=3.3e-22  Score=203.61  Aligned_cols=334  Identities=13%  Similarity=0.026  Sum_probs=251.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC-CcHHHHHHHHH
Q 011845           45 NPYIWQCWAVLENKLGNIGKARELFDASTVADK-GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG-GNEYIYQTLAL  122 (476)
Q Consensus        45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~  122 (476)
                      +...|..+...+.+.|++++|..+|+++.+... .+...|..+...|.+.|+.++|.++|+++.+... .+..+|..+..
T Consensus       436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~  515 (1060)
T PLN03218        436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID  515 (1060)
T ss_pred             CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            445566666777778888888888888776543 3566777888888888888888888888876542 36778888888


Q ss_pred             HHHHhccHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHcCC
Q 011845          123 LEAKANRYEQARNLFRQATKCN-PKSCASWIAWSQMEMQQENNLAARQLFERAVQA----SPKNRFAWHVWGIFEANMGF  197 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~  197 (476)
                      .|.+.|++++|+.+|.++.... ..+..+|..+...+.+.|++++|..+|.++...    .| +...|..+...|.+.|+
T Consensus       516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~  594 (1060)
T PLN03218        516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQ  594 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCC
Confidence            8888888888888888886654 234667888888888888888888888887652    33 35677788888888888


Q ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 011845          198 IDKGKKLLKIGHAVN-PRDPVLLQSLALLEYKYSTANLARKLFRRASEI--DPRHQPVWIAWGWMEWKEGNLDTARELYE  274 (476)
Q Consensus       198 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  274 (476)
                      +++|.++|+.+.+.+ +.+...|..+...|.+.|++++|..+|.++.+.  .|+ ...|..+...+.+.|++++|.++++
T Consensus       595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~  673 (1060)
T PLN03218        595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQ  673 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            888888888887765 456778888888888888888888888888765  343 5677888888888888888888888


Q ss_pred             HHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhh--
Q 011845          275 RALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN-SQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQR--  351 (476)
Q Consensus       275 ~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--  351 (476)
                      .+.+......  ...+..+...|.+.|++++|.++|+++.... ..+..+|..+...|.+.|++++|.++++.+....  
T Consensus       674 eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~  751 (1060)
T PLN03218        674 DARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC  751 (1060)
T ss_pred             HHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            8887643222  2356777888888888888888888876542 2345678888888888888888888888876532  


Q ss_pred             h--hhcchhhhhhhhcccchHHHHHHHHHhccc
Q 011845          352 T--EVVDDASWVMGFMDIIDPALDRIKQLLNLE  382 (476)
Q Consensus       352 ~--~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  382 (476)
                      |  ..+..+...+...|++++|..++.++++..
T Consensus       752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        752 PNTITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            2  223455567788888999999888887753

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=9e-24  Score=182.23  Aligned_cols=379  Identities=13%  Similarity=0.044  Sum_probs=319.8

Q ss_pred             cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----------
Q 011845            6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTV-----------   74 (476)
Q Consensus         6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----------   74 (476)
                      ..|.+.+.....+.+|...++-+.|+....++....  ..+.+...++..+..-++..++.-.+...+.           
T Consensus        92 ~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~--r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~  169 (564)
T KOG1174|consen   92 PEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL--RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEA  169 (564)
T ss_pred             CCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc--cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHH
Confidence            356778888899999999999999999988875432  4566666667666665554444444433321           


Q ss_pred             --------------------cCcCcHHHHH---HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845           75 --------------------ADKGHIAAWH---GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE  131 (476)
Q Consensus        75 --------------------~~p~~~~~~~---~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  131 (476)
                                          ..|..+..|.   .++.++.-...+..+..++-.-....|++...+..+|.++...|+++
T Consensus       170 ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~  249 (564)
T KOG1174|consen  170 LLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF  249 (564)
T ss_pred             HHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence                                2233333222   34555555555556666777777888999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845          132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV  211 (476)
Q Consensus       132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  211 (476)
                      +|+..|+++..++|......-.+|.++...|+++.-..+....+........-|+--+..++..+++..|+.+-++++..
T Consensus       250 ~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~  329 (564)
T KOG1174|consen  250 QAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS  329 (564)
T ss_pred             HHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999888778888999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHH
Q 011845          212 NPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQ  291 (476)
Q Consensus       212 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  291 (476)
                      +|.+..++...|.++...++.++|+-.|+.+..+.|..-..|..+..+|...|.+.+|...-+.++...|.+...   +.
T Consensus       330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~---Lt  406 (564)
T KOG1174|consen  330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARS---LT  406 (564)
T ss_pred             CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh---hh
Confidence            999999999999999999999999999999999999999999999999999999999999999999998888544   44


Q ss_pred             HHH--HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhh--cchhhhhhhhccc
Q 011845          292 AWG--VLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV--VDDASWVMGFMDI  367 (476)
Q Consensus       292 ~l~--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~g~  367 (476)
                      .+|  .++..-.--++|.+++++++.++|....+...++.++...|.+++++.++++++...++.  +..+|.++...+.
T Consensus       407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne  486 (564)
T KOG1174|consen  407 LFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE  486 (564)
T ss_pred             hhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh
Confidence            444  233444456899999999999999999999999999999999999999999999877754  4789999999999


Q ss_pred             chHHHHHHHHHhccccCCCCCC
Q 011845          368 IDPALDRIKQLLNLEKSSYKEP  389 (476)
Q Consensus       368 ~~~A~~~~~~al~~~p~~~~~~  389 (476)
                      +++|++.|..++.++|++..+.
T Consensus       487 ~Q~am~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  487 PQKAMEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             HHHHHHHHHHHHhcCccchHHH
Confidence            9999999999999999976654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.94  E-value=2e-23  Score=210.38  Aligned_cols=356  Identities=12%  Similarity=0.025  Sum_probs=161.5

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC------------
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG------------   78 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------------   78 (476)
                      ..++..+...|.+.|++++|.++|+++.    ..+...|..+...+.+.|++++|+.+|+++....+.            
T Consensus       158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a  233 (697)
T PLN03081        158 QYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA  233 (697)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence            3444555555555555555555555542    123444555555555555555555555555432110            


Q ss_pred             ------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHH
Q 011845           79 ------------------------HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR  134 (476)
Q Consensus        79 ------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  134 (476)
                                              +..++..+...|.+.|++++|.++|+++.   +.+..+|..+...|.+.|++++|+
T Consensus       234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~  310 (697)
T PLN03081        234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEAL  310 (697)
T ss_pred             HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHH
Confidence                                    11112233444444444444444444432   123344444444444444444444


Q ss_pred             HHHHHHHhcC-CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845          135 NLFRQATKCN-PKSCASWIAWSQMEMQQENNLAARQLFERAVQAS-PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN  212 (476)
Q Consensus       135 ~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  212 (476)
                      .+|+++.+.. ..+..++..+...+.+.|++++|..++..+++.. +.+..++..+...|.+.|++++|..+|+++.+  
T Consensus       311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--  388 (697)
T PLN03081        311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--  388 (697)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence            4444443322 1123344444444444444444444444444433 22334444444555555555555555544432  


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHH
Q 011845          213 PRDPVLLQSLALLEYKYSTANLARKLFRRASEI--DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL  290 (476)
Q Consensus       213 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  290 (476)
                       .+...|..+...|.+.|+.++|+++|+++.+.  .|+ ...+..+...+...|..++|..+|+.+.+..+-.+. ...|
T Consensus       389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y  465 (697)
T PLN03081        389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHY  465 (697)
T ss_pred             -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccch
Confidence             13344445555555555555555555544432  122 234444444444555555555555544432111111 1123


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhccc
Q 011845          291 QAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDI  367 (476)
Q Consensus       291 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~  367 (476)
                      ..+..++.+.|++++|.+.++++- ..| +..+|..+...+...|+.+.|..+++..++..|.   .+..+..+|...|+
T Consensus       466 ~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~  543 (697)
T PLN03081        466 ACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR  543 (697)
T ss_pred             HhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence            344455555555555555554421 122 2334555555555555555555555555444432   22344445555555


Q ss_pred             chHHHHHHHHHhc
Q 011845          368 IDPALDRIKQLLN  380 (476)
Q Consensus       368 ~~~A~~~~~~al~  380 (476)
                      +++|.+.++.+.+
T Consensus       544 ~~~A~~v~~~m~~  556 (697)
T PLN03081        544 QAEAAKVVETLKR  556 (697)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.5e-23  Score=179.48  Aligned_cols=330  Identities=14%  Similarity=0.082  Sum_probs=290.2

Q ss_pred             cccccCCCCchhHHH---HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC
Q 011845            2 KCIDYWPEDGRPYVA---LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG   78 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~   78 (476)
                      .++...|.++..|..   ++.++....-+..+..++-.-.... ++|...+..+|.+++..|++.+|+..|+++...+|.
T Consensus       186 ~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~l-r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy  264 (564)
T KOG1174|consen  186 HAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTL-RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD  264 (564)
T ss_pred             hheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccC-CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence            345666766655443   3444443344444455555555555 899999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 011845           79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQME  158 (476)
Q Consensus        79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  158 (476)
                      .....-.+|.++...|+++.-..+....+........-|+.-+...+..+++..|+.+-+++++.+|.+..++...|.++
T Consensus       265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL  344 (564)
T KOG1174|consen  265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL  344 (564)
T ss_pred             hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence            99999999999999999999999999999888777888888899999999999999999999999999999999999999


Q ss_pred             HHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHH-cCCHHHHH
Q 011845          159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA-LLEYK-YSTANLAR  236 (476)
Q Consensus       159 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la-~~~~~-~~~~~~A~  236 (476)
                      ...|+.++|+-.|+.+..+.|...+.|..+..+|...|++.+|...-+.+++..|.+..++..+| .++.. -.--++|.
T Consensus       345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK  424 (564)
T KOG1174|consen  345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK  424 (564)
T ss_pred             HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999986 44443 33457899


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          237 KLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                      +++++++.+.|....+-..++.++...|.+..++.++++.+...|+..    ++..+|.++...+.+++|.++|..++.+
T Consensus       425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~----LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN----LHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH----HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998864    4677899999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCC
Q 011845          317 NSQSYITWMTWAQLEEDQGN  336 (476)
Q Consensus       317 ~p~~~~~~~~l~~~~~~~g~  336 (476)
                      +|++..+...+-.+..+..+
T Consensus       501 dP~~~~sl~Gl~~lEK~~~~  520 (564)
T KOG1174|consen  501 DPKSKRTLRGLRLLEKSDDE  520 (564)
T ss_pred             CccchHHHHHHHHHHhccCC
Confidence            99999988887776655543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.94  E-value=5.1e-26  Score=203.55  Aligned_cols=259  Identities=19%  Similarity=0.227  Sum_probs=87.1

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845           85 GWAVLELRQGNIKKARQLLAKGLKF--CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE  162 (476)
Q Consensus        85 ~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~  162 (476)
                      .+|.++...|++++|++++.+.+..  .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            4566666666666666666444332  255566666666666666666666666666666666655555555555 4566


Q ss_pred             cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          163 NNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN--PRDPVLLQSLALLEYKYSTANLARKLFR  240 (476)
Q Consensus       163 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~  240 (476)
                      ++++|+.+++++.+..+ ++..+...+.++...++++++...++++....  +.++.++..+|.++.+.|++++|+..|+
T Consensus        92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            66666666666655443 34445555566666666666666666655433  4556666667777777777777777777


Q ss_pred             HHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 011845          241 RASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS  320 (476)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  320 (476)
                      ++++.+|+++.++..+++++...|+++++...++......|+++..   +..+|.++..+|++++|+.+|++++..+|++
T Consensus       171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~---~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDL---WDALAAAYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCH---CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHH---HHHHHHHhccccccccccccccccccccccc
Confidence            7777777776777777777766777776666666666655555443   3444777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 011845          321 YITWMTWAQLEEDQGNSVRAEEIRNLYF  348 (476)
Q Consensus       321 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~  348 (476)
                      +.++..+|.++...|+.++|..++.+++
T Consensus       248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  248 PLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHHHT----------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            7777777777777777777776665554

>TIGR00540 hemY_coli hemY protein

Probab=99.93  E-value=1.2e-22  Score=190.97  Aligned_cols=299  Identities=13%  Similarity=0.072  Sum_probs=191.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHHhc
Q 011845           50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE-YIYQTLALLEAKAN  128 (476)
Q Consensus        50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g  128 (476)
                      ...|.+....|+++.|.+.+.++.+..|.....+...|.+...+|+++.|..++.++.+..|++. .+....+.++...|
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~  167 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN  167 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence            44566666677777777777777766666666666667777777777777777777776666654 35555677777777


Q ss_pred             cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHH----HHHHHHHHcCCHHHHHHH
Q 011845          129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWH----VWGIFEANMGFIDKGKKL  204 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~  204 (476)
                      +++.|...++++++..|+++.++..++.++...|++++|...+.+..+....++....    ....-+...+..+++...
T Consensus       168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~  247 (409)
T TIGR00540       168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG  247 (409)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            7777777777777777777777777777777777777777777777665433322211    111111233333444455


Q ss_pred             HHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH--HHHHHHHHHcCChhHHHHHHHHHHc
Q 011845          205 LKIGHAVNP----RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW--IAWGWMEWKEGNLDTARELYERALS  278 (476)
Q Consensus       205 ~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~a~~  278 (476)
                      +.++....|    +++.++..++..+...|++++|...++++++..|++....  ..........++.+.+++.++++++
T Consensus       248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            555555555    4667777777777777777777777777777777665421  2222222334666777777777777


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845          279 IDSTTESAARCLQAWGVLEQRVGNLSAARRLFR--SSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ  350 (476)
Q Consensus       279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  350 (476)
                      ..|+++. ..++..+|.++.+.|++++|.++|+  .+++..|++.. +..++.++.+.|+.++|.+++++.+..
T Consensus       328 ~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       328 NVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             hCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7777752 1235556777777777777777777  46666666655 347777777777777777777766553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.93  E-value=1.8e-22  Score=203.39  Aligned_cols=340  Identities=15%  Similarity=0.133  Sum_probs=288.5

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-----------------------------------ChHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGE-----------------------------------NPYIWQCWAV   54 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------------------------~~~~~~~la~   54 (476)
                      +...|..+...|.+.|++++|+.+|+++.+.....                                   +..++..+..
T Consensus       188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~  267 (697)
T PLN03081        188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID  267 (697)
T ss_pred             CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH
Confidence            66789999999999999999999999987644222                                   3334566788


Q ss_pred             HHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC-CCcHHHHHHHHHHHHHhccHHHH
Q 011845           55 LENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC-GGNEYIYQTLALLEAKANRYEQA  133 (476)
Q Consensus        55 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A  133 (476)
                      .|.+.|++++|..+|+++.   +.+..+|..+...|.+.|++++|+.+|+++.... ..+..++..+...+.+.|++++|
T Consensus       268 ~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a  344 (697)
T PLN03081        268 MYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA  344 (697)
T ss_pred             HHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence            8999999999999999874   3577899999999999999999999999997653 34677899999999999999999


Q ss_pred             HHHHHHHHhcC-CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845          134 RNLFRQATKCN-PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN  212 (476)
Q Consensus       134 ~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  212 (476)
                      .+++..+++.. +.+..++..+...|.+.|++++|..+|++..+   .+...|..++..|.+.|+.++|+++|+++....
T Consensus       345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g  421 (697)
T PLN03081        345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG  421 (697)
T ss_pred             HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999886 56778899999999999999999999998754   356789999999999999999999999988753


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHH
Q 011845          213 -PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP--RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARC  289 (476)
Q Consensus       213 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  289 (476)
                       ..+..++..+...+...|..++|..+|+.+.+..+  .+...|..+..++.+.|++++|.+.++++. ..|+.    .+
T Consensus       422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~~----~~  496 (697)
T PLN03081        422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKPTV----NM  496 (697)
T ss_pred             CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCCH----HH
Confidence             23577788899999999999999999999986432  234678899999999999999999998752 33332    35


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhh
Q 011845          290 LQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASW  360 (476)
Q Consensus       290 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  360 (476)
                      |..+...+...|+++.|...+++++...|++...+..++.+|.+.|++++|.++++.+.+......+...|
T Consensus       497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~  567 (697)
T PLN03081        497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW  567 (697)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence            77778899999999999999999999999999999999999999999999999999987765543333333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.93  E-value=2.7e-22  Score=189.35  Aligned_cols=331  Identities=15%  Similarity=0.076  Sum_probs=277.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      ..+...|...+..|++++|..++.+++..+|.++.+|+.+|.+|..+|+.+++....-.+-.++|.+.+.|..++....+
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence            45566677888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCCHHHH
Q 011845          127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR-----FAWHVWGIFEANMGFIDKG  201 (476)
Q Consensus       127 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~~~A  201 (476)
                      +|++.+|+-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|...     ......+..+...++-+.|
T Consensus       220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a  299 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA  299 (895)
T ss_pred             cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999998331     2334557778888888999


Q ss_pred             HHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCC--------------------------CHH
Q 011845          202 KKLLKIGHAVNP--RDPVLLQSLALLEYKYSTANLARKLFRRASEI--DPR--------------------------HQP  251 (476)
Q Consensus       202 ~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~--------------------------~~~  251 (476)
                      .+.++.++....  .....+..++.++.....++.|..........  .++                          +..
T Consensus       300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~  379 (895)
T KOG2076|consen  300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR  379 (895)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence            999999988332  33456778899999999999998877665541  000                          112


Q ss_pred             H-HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-cHHHHHHHHH
Q 011845          252 V-WIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ-SYITWMTWAQ  329 (476)
Q Consensus       252 ~-~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~  329 (476)
                      + ...++.+..+.++..+++..+..--...|  ...+.++..++.++...|++.+|+.+|..+....+. +..+|+.+|.
T Consensus       380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~--~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~  457 (895)
T KOG2076|consen  380 VIRLMICLVHLKERELLEALLHFLVEDNVWV--SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR  457 (895)
T ss_pred             hHhHhhhhhcccccchHHHHHHHHHHhcCCh--hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence            2 44555555566666666655543332223  334678999999999999999999999999877543 4579999999


Q ss_pred             HHHHcCChHHHHHHHHHHHhhhhhhc---chhhhhhhhcccchHHHHHHHHHh
Q 011845          330 LEEDQGNSVRAEEIRNLYFQQRTEVV---DDASWVMGFMDIIDPALDRIKQLL  379 (476)
Q Consensus       330 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~A~~~~~~al  379 (476)
                      ||..+|.+++|++.|++++...|...   -.++.++..+|+.++|.+.+.+..
T Consensus       458 c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  458 CYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            99999999999999999999888554   568889999999999999999888

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.93  E-value=4.8e-24  Score=186.21  Aligned_cols=374  Identities=13%  Similarity=-0.006  Sum_probs=301.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc-----HHHHHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQAT-QGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-----IAAWHG   85 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~   85 (476)
                      .+++.++..|.....+.+|+..|+-+++.. .|+....-.++|.++++..+|.+|+.+|+-++..-|.-     ..++.+
T Consensus       202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n  281 (840)
T KOG2003|consen  202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN  281 (840)
T ss_pred             HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence            578899999999999999999999987532 26666777889999999999999999999999876642     456778


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------------CCch---
Q 011845           86 WAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN--------------PKSC---  148 (476)
Q Consensus        86 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------p~~~---  148 (476)
                      +|..+.+.|+|+.|+..|+.+++..|+... -+++..+++..|+-++-.+.|.+++.+.              |++.   
T Consensus       282 igvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~  360 (840)
T KOG2003|consen  282 IGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN  360 (840)
T ss_pred             cCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence            899999999999999999999999986554 4567788888999999999999887651              1110   


Q ss_pred             -----------------------------------------------------------hHHHHHHHHHHHhccHHHHHH
Q 011845          149 -----------------------------------------------------------ASWIAWSQMEMQQENNLAARQ  169 (476)
Q Consensus       149 -----------------------------------------------------------~~~~~la~~~~~~~~~~~A~~  169 (476)
                                                                                 +.-...+.-+.+.|+++.|++
T Consensus       361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie  440 (840)
T KOG2003|consen  361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE  440 (840)
T ss_pred             HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence                                                                       001122344667788888887


Q ss_pred             HHHHHHHcC-------------------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845          170 LFERAVQAS-------------------------------------PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN  212 (476)
Q Consensus       170 ~~~~a~~~~-------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  212 (476)
                      +++-.-+.+                                     .-++.+..+.|.+.+..|++++|.+.|++++..+
T Consensus       441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd  520 (840)
T KOG2003|consen  441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND  520 (840)
T ss_pred             HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence            775433322                                     2223333444555566788999999999999888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845          213 PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA  292 (476)
Q Consensus       213 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  292 (476)
                      .....+++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|..+.+..+|++++.++..+-|+++.   ++..
T Consensus       521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~---ilsk  597 (840)
T KOG2003|consen  521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA---ILSK  597 (840)
T ss_pred             hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH---HHHH
Confidence            8888899999999999999999999998887777788899999999999999999999999999999999865   4778


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc---chhhhhhhhcccch
Q 011845          293 WGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV---DDASWVMGFMDIID  369 (476)
Q Consensus       293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~  369 (476)
                      +|.+|.+.|+..+|.+++-......|.+.++.-+|+..|....-+++|+.+++++.-..|...   ...+.++...|+|+
T Consensus       598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq  677 (840)
T KOG2003|consen  598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ  677 (840)
T ss_pred             HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence            899999999999999999888889999999989999999999999999999998876655433   34667888999999


Q ss_pred             HHHHHHHHHhccccCCCCCC
Q 011845          370 PALDRIKQLLNLEKSSYKEP  389 (476)
Q Consensus       370 ~A~~~~~~al~~~p~~~~~~  389 (476)
                      +|.+.|+..-...|.+.+..
T Consensus       678 ka~d~yk~~hrkfpedldcl  697 (840)
T KOG2003|consen  678 KAFDLYKDIHRKFPEDLDCL  697 (840)
T ss_pred             HHHHHHHHHHHhCccchHHH
Confidence            99999999888888765543

>TIGR00540 hemY_coli hemY protein

Probab=99.93  E-value=6.3e-22  Score=186.01  Aligned_cols=293  Identities=12%  Similarity=0.044  Sum_probs=133.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-HHHHHHHHHHHHhCC
Q 011845           17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI-AAWHGWAVLELRQGN   95 (476)
Q Consensus        17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~~~   95 (476)
                      .|...+..|+++.|.+.+.++.+.. |.....+...|.++...|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus        90 ~glla~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~  168 (409)
T TIGR00540        90 EALLKLAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE  168 (409)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence            3444444555555555555544433 33333344444555555555555555555544444442 233334555555555


Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHH----HHHHHHHHhccHHHHHHHH
Q 011845           96 IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI----AWSQMEMQQENNLAARQLF  171 (476)
Q Consensus        96 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~  171 (476)
                      ++.|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....++....    ....-+...+..+++...+
T Consensus       169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            555555555555555555555555555555555555555555555544322222111    1111112222333333344


Q ss_pred             HHHHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 011845          172 ERAVQASP----KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL--QSLALLEYKYSTANLARKLFRRASEI  245 (476)
Q Consensus       172 ~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~~~~  245 (476)
                      ..+....|    +++.++..++..+...|++++|...++++++..|++....  ..........++...+++.++++++.
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            44444444    2444555555555555555555555555555555444321  11111122234444555555555555


Q ss_pred             CCCCH--HHHHHHHHHHHHcCChhHHHHHHH--HHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845          246 DPRHQ--PVWIAWGWMEWKEGNLDTARELYE--RALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSL  314 (476)
Q Consensus       246 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  314 (476)
                      .|+++  .+...+|+++.+.|++++|.++|+  .+++..|++..    +..+|.++.+.|+.++|.++|++++
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~----~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND----LAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555  444455555555555555555555  34444444322    1234555555555555555555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.93  E-value=1.3e-21  Score=181.73  Aligned_cols=379  Identities=16%  Similarity=0.130  Sum_probs=311.3

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--cCcHHHHHHH
Q 011845            9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVAD--KGHIAAWHGW   86 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l   86 (476)
                      +++.+|-.+...+...|+|+.+.+.|++++... -...+.|+.++.++...|.-..|+.+++..+...  |.++..+...
T Consensus       321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma  399 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA  399 (799)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence            678888899999999999999999999998665 5667899999999999999999999999998877  7777666654


Q ss_pred             HH-HHHHhCCHHHHHHHHHHhhccCC-----CcHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhcCCCchh
Q 011845           87 AV-LELRQGNIKKARQLLAKGLKFCG-----GNEYIYQTLALLEAKA-----------NRYEQARNLFRQATKCNPKSCA  149 (476)
Q Consensus        87 a~-~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~  149 (476)
                      +. |..+.+..++++.+..+++....     -.+..+..+|.+|..+           ....++++.++++++.+|+|+.
T Consensus       400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~  479 (799)
T KOG4162|consen  400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL  479 (799)
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            44 55567899999999999988432     2355677777777543           3467899999999999999999


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011845          150 SWIAWSQMEMQQENNLAARQLFERAVQA-SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK  228 (476)
Q Consensus       150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  228 (476)
                      +.+.++.-|...++.+.|....++++.. ..+++..|..++.++...+++.+|+.+...++...|+|.........+...
T Consensus       480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~  559 (799)
T KOG4162|consen  480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT  559 (799)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence            9999999999999999999999999999 456789999999999999999999999999999888754443333333333


Q ss_pred             cCCHHHHHHH-------------------------------------------HHHHhcc--------C-----C-----
Q 011845          229 YSTANLARKL-------------------------------------------FRRASEI--------D-----P-----  247 (476)
Q Consensus       229 ~~~~~~A~~~-------------------------------------------~~~~~~~--------~-----~-----  247 (476)
                      .++.++|+..                                           +..+...        .     |     
T Consensus       560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~  639 (799)
T KOG4162|consen  560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL  639 (799)
T ss_pred             cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence            3333333332                                           2222110        0     1     


Q ss_pred             ---CC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845          248 ---RH-----QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ  319 (476)
Q Consensus       248 ---~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  319 (476)
                         +.     ...|...+..+...++.++|..++.++-.+.|...   ..++..|.++...|++.+|.+.|..++.++|+
T Consensus       640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~---~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~  716 (799)
T KOG4162|consen  640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA---SVYYLRGLLLEVKGQLEEAKEAFLVALALDPD  716 (799)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH---HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence               11     14677788899999999999999999999998874   45777899999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHH--HHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCCCCCC
Q 011845          320 SYITWMTWAQLEEDQGNSVRAEE--IRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSA  391 (476)
Q Consensus       320 ~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  391 (476)
                      ++.+...+|.++.+.|+..-|..  ++..+++.+|   +.|..+|.++...|+.++|.++|..++++.+.+|..-..
T Consensus       717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs  793 (799)
T KOG4162|consen  717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS  793 (799)
T ss_pred             CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence            99999999999999999888877  8888888665   778999999999999999999999999999998875443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.92  E-value=1.3e-21  Score=182.90  Aligned_cols=293  Identities=11%  Similarity=0.099  Sum_probs=166.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHH-HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH-HHHHHHHHH
Q 011845           15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCW-AVLENKLGNIGKARELFDASTVADKGHIAAW-HGWAVLELR   92 (476)
Q Consensus        15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~la~~~~~   92 (476)
                      +..|...+..|+|++|.+...+..+..  +++.+++.+ +....+.|+++.|..+|.++.+.+|++..+. ...+.++..
T Consensus        88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~  165 (398)
T PRK10747         88 TEQALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA  165 (398)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            344555555666666666666553321  223333333 4444666666666666666666666554222 233666666


Q ss_pred             hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHH--------HHHHHHHHhccH
Q 011845           93 QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI--------AWSQMEMQQENN  164 (476)
Q Consensus        93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--------~la~~~~~~~~~  164 (476)
                      .|++++|...++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.++....        .+........+.
T Consensus       166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~  245 (398)
T PRK10747        166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS  245 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            666666666666666666666666666666666666666666666666665544332211        111111112222


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845          165 LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASE  244 (476)
Q Consensus       165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  244 (476)
                      +.....++..-...|+++.+...++..+...|+.++|...++++++. +.++.....++.+  ..++++++++.+++.++
T Consensus       246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk  322 (398)
T PRK10747        246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIK  322 (398)
T ss_pred             HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHh
Confidence            33333333333334556666666666666666666666666666663 3344433333333  23666666666666666


Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          245 IDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       245 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                      ..|+++..+..+|.++...|++++|.++|+++++..|++..    +..++.++.+.|+.++|..+|++++.+
T Consensus       323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~----~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD----YAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            66666666666666666666666666666666666666532    234566666666666666666666553

>PLN03077 Protein ECB2; Provisional

Probab=99.92  E-value=6.6e-22  Score=204.14  Aligned_cols=355  Identities=14%  Similarity=0.065  Sum_probs=171.9

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--cCcHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVAD--KGHIAAWHGWA   87 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la   87 (476)
                      +..++..+...|.+.|++++|.++|+++.    ..+...|..+...|.+.|++++|+.+|+++....  |+ ...+..+.
T Consensus       322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll  396 (857)
T PLN03077        322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVL  396 (857)
T ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHH
Confidence            34445555555555555555555555542    2234445555555555555555555555543321  22 22333333


Q ss_pred             HHHHHhCCHHHHHHHHHHhhccCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHH
Q 011845           88 VLELRQGNIKKARQLLAKGLKFCG-GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLA  166 (476)
Q Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~  166 (476)
                      ..+...|+++.|.+++..+.+... .+..++..+...|.+.|++++|.++|+++.+   .+...|..+...|...|+.++
T Consensus       397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~e  473 (857)
T PLN03077        397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFE  473 (857)
T ss_pred             HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHH
Confidence            344445555555555554444321 2334455555666666666666666655432   234455556666666666666


Q ss_pred             HHHHHHHHHHcCCCcHHHHH-----------------------------------HHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845          167 ARQLFERAVQASPKNRFAWH-----------------------------------VWGIFEANMGFIDKGKKLLKIGHAV  211 (476)
Q Consensus       167 A~~~~~~a~~~~~~~~~~~~-----------------------------------~l~~~~~~~~~~~~A~~~~~~~~~~  211 (476)
                      |+..|+++....+.+...+.                                   .+...|.+.|+.++|...|+..   
T Consensus       474 A~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---  550 (857)
T PLN03077        474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---  550 (857)
T ss_pred             HHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---
Confidence            66666665543222222222                                   2234444445555555544443   


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHH
Q 011845          212 NPRDPVLLQSLALLEYKYSTANLARKLFRRASEI--DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARC  289 (476)
Q Consensus       212 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  289 (476)
                       +.+...|..+...|...|+.++|+.+|+++.+.  .|+ ...+..+...+.+.|..++|..+|+.+.+..+-.+. ...
T Consensus       551 -~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~  627 (857)
T PLN03077        551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKH  627 (857)
T ss_pred             -CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHH
Confidence             234445555555555555555555555554432  232 233444444455555555555555555432211111 123


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhcc
Q 011845          290 LQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMD  366 (476)
Q Consensus       290 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g  366 (476)
                      |..+..++.+.|++++|.+.++++ ...|+ ..+|..+...+...|+.+.+....+++++..|.   .+..++++|...|
T Consensus       628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g  705 (857)
T PLN03077        628 YACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG  705 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence            444455555555555555555543 12232 344444444555555555555555555544442   2234455666666


Q ss_pred             cchHHHHHHHHHhc
Q 011845          367 IIDPALDRIKQLLN  380 (476)
Q Consensus       367 ~~~~A~~~~~~al~  380 (476)
                      ++++|.+..+.+.+
T Consensus       706 ~~~~a~~vr~~M~~  719 (857)
T PLN03077        706 KWDEVARVRKTMRE  719 (857)
T ss_pred             ChHHHHHHHHHHHH
Confidence            66666666555543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=9.2e-22  Score=176.02  Aligned_cols=340  Identities=13%  Similarity=0.048  Sum_probs=270.7

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      +++.++|.|...+.....+|...|+|++|++--.+.++.. |.-+..|..+|..+.-+|+|++|+..|.+.++.+|++..
T Consensus        27 ~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~  105 (539)
T KOG0548|consen   27 EAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQ  105 (539)
T ss_pred             HHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHH
Confidence            4788999999999999999999999999999999999998 999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhCC------------------------HHHHHHHHHHhhccC---------------------------
Q 011845           82 AWHGWAVLELRQGN------------------------IKKARQLLAKGLKFC---------------------------  110 (476)
Q Consensus        82 ~~~~la~~~~~~~~------------------------~~~A~~~~~~~~~~~---------------------------  110 (476)
                      ....++.++.....                        .+.+.....+.++.+                           
T Consensus       106 L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~  185 (539)
T KOG0548|consen  106 LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELL  185 (539)
T ss_pred             HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccc
Confidence            88888877632200                        000111111111111                           


Q ss_pred             --------------CC------------c---------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHH
Q 011845          111 --------------GG------------N---------EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWS  155 (476)
Q Consensus       111 --------------p~------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la  155 (476)
                                    |.            .         ..-...+|....+..++..|++.|..++.++ .+...+...+
T Consensus       186 ~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~a  264 (539)
T KOG0548|consen  186 FYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIA  264 (539)
T ss_pred             ccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHH
Confidence                          10            0         0124568888999999999999999999999 8888899999


Q ss_pred             HHHHHhccHHHHHHHHHHHHHcCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------
Q 011845          156 QMEMQQENNLAARQLFERAVQASPKNR-------FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--------------  214 (476)
Q Consensus       156 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------  214 (476)
                      -+|...|.+.+.+.....+++......       .....+|..+...++++.|+.+|.+++.....              
T Consensus       265 A~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~  344 (539)
T KOG0548|consen  265 AVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKAL  344 (539)
T ss_pred             HHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Confidence            999999999999999988887665432       22334566777788999999999998764322              


Q ss_pred             ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845          215 ------------DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       215 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                                  -..-...-|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.+.|.+..|+...+.+++++|+
T Consensus       345 k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~  424 (539)
T KOG0548|consen  345 KEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN  424 (539)
T ss_pred             HHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence                        22233445788888999999999999999999999999999999999999999999999999999888


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845          283 TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNL  346 (476)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  346 (476)
                      .   ...|.+-|.++..+.+|++|.+.|+++++.+|++..+.-.+.+|...........++.++
T Consensus       425 ~---~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  425 F---IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence            7   445777899999999999999999999999999998888888888765444444555555

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.7e-20  Score=164.93  Aligned_cols=373  Identities=20%  Similarity=0.323  Sum_probs=265.0

Q ss_pred             CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHH
Q 011845            7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGW   86 (476)
Q Consensus         7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l   86 (476)
                      +.-+...|...|+--..++++..|..+|++++..+ ..+..+|..++.+-++......|..++++++..-|.-...|+..
T Consensus        69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY  147 (677)
T KOG1915|consen   69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY  147 (677)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH
Confidence            33455677777888888888888888888888877 77788888888888888888888888888888888877888888


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHH
Q 011845           87 AVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLA  166 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~  166 (476)
                      ..+-...|+...|.++|++-+...|+ ..+|......-.+.+..+.|..+|++.+-.+|+ ...|...+..-.+.|+...
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~  225 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVAL  225 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHH
Confidence            88888888888888888888877764 344555555555555555555555555555442 3344444444444443333


Q ss_pred             HHHHHHHHH-----------------------------------------------------------------------
Q 011845          167 ARQLFERAV-----------------------------------------------------------------------  175 (476)
Q Consensus       167 A~~~~~~a~-----------------------------------------------------------------------  175 (476)
                      |..+|++|+                                                                       
T Consensus       226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~  305 (677)
T KOG1915|consen  226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG  305 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence            333333332                                                                       


Q ss_pred             ----------HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHH-HHHHcCCHHHH
Q 011845          176 ----------QASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPV---------LLQSLAL-LEYKYSTANLA  235 (476)
Q Consensus       176 ----------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~-~~~~~~~~~~A  235 (476)
                                ..+|.+.++|+.+..+....|+.+.-.+.|++++...|....         .|.+++. ......+.+.+
T Consensus       306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert  385 (677)
T KOG1915|consen  306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT  385 (677)
T ss_pred             hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence                      224444455666666666667777777777777766654321         2233321 12345677777


Q ss_pred             HHHHHHHhccCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011845          236 RKLFRRASEIDPR----HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFR  311 (476)
Q Consensus       236 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  311 (476)
                      .++|+.++++-|.    .+.+|...+....++.+...|...+..++...|.+..    +..+..+-.++++++....+|+
T Consensus       386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl----Fk~YIelElqL~efDRcRkLYE  461 (677)
T KOG1915|consen  386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL----FKGYIELELQLREFDRCRKLYE  461 (677)
T ss_pred             HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH----HHHHHHHHHHHhhHHHHHHHHH
Confidence            7777777777775    3467777788888888888888888888888887643    4455778889999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh----hh-cchhhhhhhhcccchHHHHHHHHHhccccCCC
Q 011845          312 SSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT----EV-VDDASWVMGFMDIIDPALDRIKQLLNLEKSSY  386 (476)
Q Consensus       312 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  386 (476)
                      +-++..|.+..+|..+|.+...+|+.+.|..+|+.++++..    ++ +......-...|.++.|..+|++.|+..+...
T Consensus       462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k  541 (677)
T KOG1915|consen  462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK  541 (677)
T ss_pred             HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence            99999999999999999999999999999999999988543    22 12333344567899999999999999888765

>PRK12370 invasion protein regulator; Provisional

Probab=99.92  E-value=1.8e-22  Score=196.73  Aligned_cols=216  Identities=17%  Similarity=0.075  Sum_probs=126.9

Q ss_pred             CHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh---------CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845           61 NIGKARELFDASTVADKGHIAAWHGWAVLELRQ---------GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE  131 (476)
Q Consensus        61 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  131 (476)
                      ++++|+.+|+++++.+|+++.++..+|.++...         +++++|+..++++++++|+++.++..+|.++...|+++
T Consensus       276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~  355 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI  355 (553)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence            345666666666666666666666666555432         22556666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845          132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV  211 (476)
Q Consensus       132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  211 (476)
                      +|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..+++++..
T Consensus       356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ  435 (553)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            66666666666666666666666666666666666666666666666665544444444455556666666666665554


Q ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845          212 N-PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALS  278 (476)
Q Consensus       212 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  278 (476)
                      . |+++..+..+|.++...|++++|+..+.++....|.....+..++..|...|+  +|...+++.++
T Consensus       436 ~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~  501 (553)
T PRK12370        436 HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE  501 (553)
T ss_pred             ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence            3 45555556666666666666666666666555555555555555555555552  44444444433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.92  E-value=4.6e-23  Score=172.70  Aligned_cols=265  Identities=15%  Similarity=0.162  Sum_probs=239.9

Q ss_pred             HHHHhCCHHHHHHHHHHhhccC---C-------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 011845           89 LELRQGNIKKARQLLAKGLKFC---G-------GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQME  158 (476)
Q Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~---p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  158 (476)
                      +++..++...|-......++..   |       .+......+|.||.++|.+.+|.+.++..++..| .++.+..++.+|
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY  266 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY  266 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence            3445666666665555544432   1       1234457899999999999999999999999877 578999999999


Q ss_pred             HHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011845          159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKL  238 (476)
Q Consensus       159 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  238 (476)
                      .+..++..|+..+.+.++..|.+.......+.++..++++++|.++|+.+++.+|.+.++...+|.-|+..++++-|+.+
T Consensus       267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry  346 (478)
T KOG1129|consen  267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY  346 (478)
T ss_pred             HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 011845          239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS  318 (476)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  318 (476)
                      |++.+++.-.+++.+.++|.+++..++++-++..|++++...........+|+++|.+....|++.-|..+|+-++..+|
T Consensus       347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~  426 (478)
T KOG1129|consen  347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA  426 (478)
T ss_pred             HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence            99999999999999999999999999999999999999999887777888999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhh
Q 011845          319 QSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV  354 (476)
Q Consensus       319 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  354 (476)
                      ++.+++.+++.+..+.|+.++|..++..+....|..
T Consensus       427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            999999999999999999999999988887766643

>PRK12370 invasion protein regulator; Provisional

Probab=99.91  E-value=5.2e-22  Score=193.44  Aligned_cols=262  Identities=13%  Similarity=-0.023  Sum_probs=224.7

Q ss_pred             HHHHHHHHHh---cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhcCcCcHH
Q 011845           14 YVALGKVLSK---QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKL---------GNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus        14 ~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      ++..|..+..   .+.+++|+..|+++++.+ |.++.++..+|.++...         +++++|+..++++++.+|+++.
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~  339 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ  339 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence            4445554443   345789999999999998 89999999999887643         3489999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      ++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..++++++++|.++..+..++.++...
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH  419 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988777777778889


Q ss_pred             ccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          162 ENNLAARQLFERAVQAS-PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR  240 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  240 (476)
                      |++++|+..+++++... |+++..+..+|.++...|++++|+..+.++....|.+...+..++..+...|+  +|...++
T Consensus       420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~  497 (553)
T PRK12370        420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIR  497 (553)
T ss_pred             cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHH
Confidence            99999999999999875 77888999999999999999999999999999999888899999999988884  7777777


Q ss_pred             HHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845          241 RASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI  279 (476)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  279 (476)
                      .+++.....+........++.-.|+.+.+..+ +++.+.
T Consensus       498 ~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        498 EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence            76664433222233367777778888877776 666554

>PLN03077 Protein ECB2; Provisional

Probab=99.91  E-value=7.7e-21  Score=196.23  Aligned_cols=341  Identities=13%  Similarity=0.057  Sum_probs=272.5

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc-CcHHHHHHHH
Q 011845            9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADK-GHIAAWHGWA   87 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la   87 (476)
                      .+...|..+...|.+.|++++|+.+|+++.......+...+..+...+.+.|++++|.+++..+.+... .+..++..+.
T Consensus       352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li  431 (857)
T PLN03077        352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI  431 (857)
T ss_pred             CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            467789999999999999999999999987665445666677777788888888888888888876543 3456777888


Q ss_pred             HHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH-----------------
Q 011845           88 VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS-----------------  150 (476)
Q Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------  150 (476)
                      ..|.+.|++++|.++|+++.+   .+...|..+...|...|+.++|+.+|+++....+.+...                 
T Consensus       432 ~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~  508 (857)
T PLN03077        432 EMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCG  508 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHh
Confidence            888888888888888887654   345677888888888888888888888887543222222                 


Q ss_pred             ------------------HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845          151 ------------------WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN  212 (476)
Q Consensus       151 ------------------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  212 (476)
                                        ...+...|.+.|++++|...|+..    +.+...|..+...|...|+.++|+.+|+++.+..
T Consensus       509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g  584 (857)
T PLN03077        509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG  584 (857)
T ss_pred             HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                              234557788889999999998875    5677899999999999999999999999998753


Q ss_pred             C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHH
Q 011845          213 P-RDPVLLQSLALLEYKYSTANLARKLFRRASEIDP--RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARC  289 (476)
Q Consensus       213 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  289 (476)
                      . .+..++..+...+...|.+++|..+|+.+.+..+  .+...|..+..++.+.|++++|.+.++++ ...|+.    .+
T Consensus       585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~----~~  659 (857)
T PLN03077        585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP----AV  659 (857)
T ss_pred             CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH----HH
Confidence            2 2456677777889999999999999999985432  23478899999999999999999999986 345553    23


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhh
Q 011845          290 LQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV  361 (476)
Q Consensus       290 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  361 (476)
                      |..+-..+...|+.+.+....++++++.|++...+..++.+|...|++++|.++.+.+.+......+...|+
T Consensus       660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i  731 (857)
T PLN03077        660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV  731 (857)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence            555566778899999999999999999999999999999999999999999999998877655544444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.91  E-value=2.9e-20  Score=173.75  Aligned_cols=292  Identities=12%  Similarity=0.050  Sum_probs=212.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHH-HHHHHHHHhCCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHh
Q 011845           50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWH-GWAVLELRQGNIKKARQLLAKGLKFCGGNEY-IYQTLALLEAKA  127 (476)
Q Consensus        50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~  127 (476)
                      +.-|......|+++.|.+.+.+.....+ ++..++ ..+.+....|+++.|..++.++.+..|++.. .....+.++...
T Consensus        88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~  166 (398)
T PRK10747         88 TEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR  166 (398)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence            4556666777888888877777655432 344444 4456668888999999999888888887753 334458888888


Q ss_pred             ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHH--------HHHHHHHHHcCCHH
Q 011845          128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW--------HVWGIFEANMGFID  199 (476)
Q Consensus       128 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------~~l~~~~~~~~~~~  199 (476)
                      |++++|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+..+.++...        ..+........+.+
T Consensus       167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~  246 (398)
T PRK10747        167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE  246 (398)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            9999999999998888898888888888888888999999888888887665543321        22222222333444


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845          200 KGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI  279 (476)
Q Consensus       200 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  279 (476)
                      ...++++..-...|+++.+...++..+...|+.++|...++++++. +.++......+.+  ..+++++++..+++.++.
T Consensus       247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~  323 (398)
T PRK10747        247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ  323 (398)
T ss_pred             HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh
Confidence            4555555555556778888888888888888888888888888884 4445444444443  348888888888888888


Q ss_pred             CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          280 DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       280 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      .|+++..   +..+|.++...|++++|.++|+++++..|++.. +..++.++.+.|+.++|..+|++.+.
T Consensus       324 ~P~~~~l---~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        324 HGDTPLL---WSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            8888543   566688888888888888888888888887654 45688888888888888877776654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.90  E-value=4.4e-20  Score=171.79  Aligned_cols=340  Identities=17%  Similarity=0.141  Sum_probs=264.5

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccC-CCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcC-----cCcHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQAT-QGENPY-IWQCWAVLENKLGNIGKARELFDASTVAD-----KGHIAA   82 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~   82 (476)
                      ..+.|+.++..+...|.-..|+.+.+...... .|.++. .+.....|....+.+++++.+..+++...     --.+.+
T Consensus       356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~  435 (799)
T KOG4162|consen  356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG  435 (799)
T ss_pred             hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence            34678888888888888888888888877654 133333 33444456667788888888888887622     112456


Q ss_pred             HHHHHHHHHHhC-----------CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCchhH
Q 011845           83 WHGWAVLELRQG-----------NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN-PKSCAS  150 (476)
Q Consensus        83 ~~~la~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~  150 (476)
                      +..+|.+|..+-           ...+++..++++++.+|.|+.+.+.++.-|...++.+.|....+++++.+ .+++.+
T Consensus       436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~  515 (799)
T KOG4162|consen  436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKA  515 (799)
T ss_pred             HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHH
Confidence            666676665322           24577888888888888888888888888888888888888888888884 456778


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------
Q 011845          151 WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV-------------------  211 (476)
Q Consensus       151 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------  211 (476)
                      |..++.++...+++.+|+.+...++...|+|.........+....++.++++..+...+..                   
T Consensus       516 whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~l  595 (799)
T KOG4162|consen  516 WHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRL  595 (799)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhh
Confidence            8888888888888888888888888888776555555555555555555555544333210                   


Q ss_pred             ---------------------------------------------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          212 ---------------------------------------------NPRD-----PVLLQSLALLEYKYSTANLARKLFRR  241 (476)
Q Consensus       212 ---------------------------------------------~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~  241 (476)
                                                                   .|+.     ...|...+..+...+..++|..++.+
T Consensus       596 k~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E  675 (799)
T KOG4162|consen  596 KAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE  675 (799)
T ss_pred             hcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence                                                         0111     12566788889999999999999999


Q ss_pred             HhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHhhCCC
Q 011845          242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARR--LFRSSLNINSQ  319 (476)
Q Consensus       242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~  319 (476)
                      +-.++|..+..|+..|.++...|+..+|...|..++.++|++...   ...+|.++.+.|+..-|..  .+..+++++|.
T Consensus       676 a~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s---~~Ala~~lle~G~~~la~~~~~L~dalr~dp~  752 (799)
T KOG4162|consen  676 ASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS---MTALAELLLELGSPRLAEKRSLLSDALRLDPL  752 (799)
T ss_pred             HHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence            999999999999999999999999999999999999999999665   5677999999999888888  99999999999


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845          320 SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT  352 (476)
Q Consensus       320 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  352 (476)
                      ++++|+.+|.++...|+.++|.+.|..+++...
T Consensus       753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999988544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.90  E-value=5.3e-22  Score=166.42  Aligned_cols=233  Identities=16%  Similarity=0.121  Sum_probs=165.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845           50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR  129 (476)
Q Consensus        50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  129 (476)
                      ..+|.||+++|.+.+|...++..+...| .++.+..++.+|.+..+...|+.++.+.+...|.+...+...+.++..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            4567777777777777777777776554 466677777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845          130 YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGH  209 (476)
Q Consensus       130 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  209 (476)
                      +++|.++|+.+++.+|.+.++...+|.-|+-.++++-|+.+|+++++..-.+++.+.++|.|....++++-++..|++++
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl  385 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL  385 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence            77777777777777777777766667777777777777777777777777777777777777777777777777777776


Q ss_pred             hcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845          210 AVNP---RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT  283 (476)
Q Consensus       210 ~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  283 (476)
                      ....   .-.++|+++|.+....|++.-|..+|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-
T Consensus       386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            5433   1245677777777777777777777777777777777777777777777777777777777766666654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=9.1e-22  Score=177.52  Aligned_cols=261  Identities=17%  Similarity=0.138  Sum_probs=185.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845           50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR  129 (476)
Q Consensus        50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  129 (476)
                      +..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            45677777788888888888888888888888888888888888887888888888888888888888888888888887


Q ss_pred             HHHHHHHHHHHHhcCCCchhHHH-------HHHHHHHHhccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCCHHH
Q 011845          130 YEQARNLFRQATKCNPKSCASWI-------AWSQMEMQQENNLAARQLFERAVQASP--KNRFAWHVWGIFEANMGFIDK  200 (476)
Q Consensus       130 ~~~A~~~~~~~~~~~p~~~~~~~-------~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~  200 (476)
                      -.+|+.++.+-+...|.....-.       ....-......+..-.+.|-.+....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            77888888877776654321110       000011122234445566666666666  577888888888888888888


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccC
Q 011845          201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID  280 (476)
Q Consensus       201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  280 (476)
                      |+.+|+.++...|++...|+.||-.+....+.++|+..|.+|+++.|....+++++|..++..|.|.+|..+|-.++.+.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888887765


Q ss_pred             CCCh----h---HHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845          281 STTE----S---AARCLQAWGVLEQRVGNLSAARRLF  310 (476)
Q Consensus       281 ~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~  310 (476)
                      +...    .   .-.+|..|-.++...++.+-+....
T Consensus       529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            4310    0   0123444456666666666554443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=1.3e-21  Score=176.62  Aligned_cols=257  Identities=15%  Similarity=0.153  Sum_probs=222.7

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                      +..|..+++.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHH
Q 011845          164 NLAARQLFERAVQASPKNRFAWHV-------WGIFEANMGFIDKGKKLLKIGHAVNP--RDPVLLQSLALLEYKYSTANL  234 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~  234 (476)
                      -.+|..++.+.+...|.....-..       ...-......+..-.+.|-.+....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999999999887654211110       00011112234455677777777777  789999999999999999999


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845          235 ARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSL  314 (476)
Q Consensus       235 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  314 (476)
                      |+.+|+.++...|++...|..||-.+....+.++|+..|.+|+++.|....   +.+++|..+..+|.|++|.++|-.+|
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR---~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR---VRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee---eehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999954   57899999999999999999999999


Q ss_pred             hhCCC----------cHHHHHHHHHHHHHcCChHHHHHH
Q 011845          315 NINSQ----------SYITWMTWAQLEEDQGNSVRAEEI  343 (476)
Q Consensus       315 ~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~  343 (476)
                      .+.+.          +..+|..|-.++...++.+-+.+.
T Consensus       526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            88644          135888888888888888865544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.89  E-value=1e-20  Score=169.36  Aligned_cols=218  Identities=13%  Similarity=0.104  Sum_probs=140.6

Q ss_pred             CCHHHHHHHHHHHhhcCc----CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHH
Q 011845           60 GNIGKARELFDASTVADK----GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARN  135 (476)
Q Consensus        60 g~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~  135 (476)
                      +..+.++..+.+++...|    ..+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            455666777777764332    2245677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011845          136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD  215 (476)
Q Consensus       136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  215 (476)
                      .|+++++++|++..++..+|.++...|++++|+..|+++++.+|+++... ....+....+++++|+..+.+.....+.+
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~  198 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE  198 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence            77777777777777777777777777777777777777777777765321 11223344566777777776655433222


Q ss_pred             HHHHHHHHHHHHHcCCHHH--HHHHHHHH----hccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845          216 PVLLQSLALLEYKYSTANL--ARKLFRRA----SEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS  281 (476)
Q Consensus       216 ~~~~~~la~~~~~~~~~~~--A~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  281 (476)
                      .  |. .+.+....|+...  +...+.+.    .+..|..+.+|+.+|.++...|++++|+.+|++++..+|
T Consensus       199 ~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        199 Q--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             c--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            1  11 2334444444432  22222222    234455667788888888888888888888888888775

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.89  E-value=3.6e-20  Score=165.84  Aligned_cols=239  Identities=18%  Similarity=0.120  Sum_probs=190.3

Q ss_pred             hCCHHHHHHHHHHhhccCC----CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH
Q 011845           93 QGNIKKARQLLAKGLKFCG----GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR  168 (476)
Q Consensus        93 ~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~  168 (476)
                      .+..+.++..+.+++...|    ..+..++.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            4567888899999996443    336789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845          169 QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR  248 (476)
Q Consensus       169 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  248 (476)
                      ..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..|.+.....+.
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~  197 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDK  197 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence            9999999999999999999999999999999999999999999999874222 122345678899999999887654332


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-CcHHH
Q 011845          249 HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE----SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS-QSYIT  323 (476)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~  323 (476)
                      .  .|. .+.++...|+...+ ..++.+.+......    .....++.+|.++...|++++|+.+|++++..+| +..+.
T Consensus       198 ~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~  273 (296)
T PRK11189        198 E--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH  273 (296)
T ss_pred             c--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence            2  232 35566667777554 34444442211111    1245788999999999999999999999999996 66677


Q ss_pred             HHHHHHHHHHcCC
Q 011845          324 WMTWAQLEEDQGN  336 (476)
Q Consensus       324 ~~~l~~~~~~~g~  336 (476)
                      .+.+..+....+.
T Consensus       274 ~~~~~e~~~~~~~  286 (296)
T PRK11189        274 RYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHHHhh
Confidence            7777766655444

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=5.6e-18  Score=149.28  Aligned_cols=379  Identities=20%  Similarity=0.352  Sum_probs=272.1

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      ++|..+..+...|+..+.+-++......|..++.+++... |.-...|+.+..+-..+|+...|.++|++-+.-.|+ ..
T Consensus        98 RALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eq  175 (677)
T KOG1915|consen   98 RALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQ  175 (677)
T ss_pred             HHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HH
Confidence            3566666777777777777777777777777777777776 666667777777777777777777777776665553 33


Q ss_pred             HHH---------------------------------HHHHHHHHhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHHHH
Q 011845           82 AWH---------------------------------GWAVLELRQGNIKKARQLLAKGLKFCGGNE---YIYQTLALLEA  125 (476)
Q Consensus        82 ~~~---------------------------------~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~  125 (476)
                      +|.                                 ..+..-.+.|+..-|..+|+++++...++.   .++...|..-.
T Consensus       176 aW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe  255 (677)
T KOG1915|consen  176 AWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE  255 (677)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            444                                 444444455555555555555544332221   12233333333


Q ss_pred             HhccHHHHHHHHHHHHhc--------------------------------------------CCCchhHHHHHHHHHHHh
Q 011845          126 KANRYEQARNLFRQATKC--------------------------------------------NPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~--------------------------------------------~p~~~~~~~~la~~~~~~  161 (476)
                      .+..++.|..+|+-++..                                            +|.+-++|+.+..+....
T Consensus       256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~  335 (677)
T KOG1915|consen  256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV  335 (677)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc
Confidence            444444444444433332                                            566677888888888889


Q ss_pred             ccHHHHHHHHHHHHHcCCCcH---------HHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 011845          162 ENNLAARQLFERAVQASPKNR---------FAWHVWGIF-EANMGFIDKGKKLLKIGHAVNPRD----PVLLQSLALLEY  227 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~~~~~---------~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~  227 (476)
                      |+.+.-.+.|++|+...|...         .+|.+++.. -....+.+.+.++|+.++.+-|..    ..+|...|....
T Consensus       336 g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI  415 (677)
T KOG1915|consen  336 GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI  415 (677)
T ss_pred             CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence            999999999999999877642         233333322 245689999999999999999865    557889999999


Q ss_pred             HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHH
Q 011845          228 KYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAAR  307 (476)
Q Consensus       228 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  307 (476)
                      ++.+...|.+.+-.++...|.+ .++-....+-.+.++++....+|++.++..|.+...   +...|.+-..+|+.+.|.
T Consensus       416 Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~---W~kyaElE~~LgdtdRaR  491 (677)
T KOG1915|consen  416 RQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA---WSKYAELETSLGDTDRAR  491 (677)
T ss_pred             HHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH---HHHHHHHHHHhhhHHHHH
Confidence            9999999999999999999986 677778888889999999999999999999999554   667799999999999999


Q ss_pred             HHHHHHHhhCCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhh-------hcc-----------c
Q 011845          308 RLFRSSLNINSQSY--ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMG-------FMD-----------I  367 (476)
Q Consensus       308 ~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------~~g-----------~  367 (476)
                      .+|+-|+....-+.  ..|-.+..+....|.++.|..+|+++++..+-+......+-+       ..+           .
T Consensus       492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~  571 (677)
T KOG1915|consen  492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDEN  571 (677)
T ss_pred             HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhH
Confidence            99999987653332  577888899999999999999999999865533222222111       222           4


Q ss_pred             chHHHHHHHHHhccccCCC
Q 011845          368 IDPALDRIKQLLNLEKSSY  386 (476)
Q Consensus       368 ~~~A~~~~~~al~~~p~~~  386 (476)
                      ...|...|++|.....+..
T Consensus       572 ~~~AR~iferAn~~~k~~~  590 (677)
T KOG1915|consen  572 IKRARKIFERANTYLKEST  590 (677)
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            5678888888877655543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.88  E-value=1.8e-18  Score=158.16  Aligned_cols=248  Identities=17%  Similarity=0.118  Sum_probs=182.4

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL   91 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   91 (476)
                      ..++..+.-.+..++|.+.++..+.+++.. |..++.+-..|..+..+|+.++|......++..++.+...|..+|.++.
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            455666666777888888888888888876 8888888888888888888888888888888888888888888888888


Q ss_pred             HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHH
Q 011845           92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLF  171 (476)
Q Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  171 (476)
                      ...+|++|+++|+.++...|+|..++..++.+..++++++.....-.+.++..|.....|...+..+...|++..|...+
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il  166 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL  166 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             HHHHHcC---CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845          172 ERAVQAS---PKN-----RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS  243 (476)
Q Consensus       172 ~~a~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  243 (476)
                      +...+..   |+.     .........+....|.+++|++.+..--...-+........+.++.+.+++++|..+|...+
T Consensus       167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll  246 (700)
T KOG1156|consen  167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL  246 (700)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence            7766544   322     22333444455556666666655544322222233344455666666666667776666666


Q ss_pred             ccCCCCHHHHHHHHHHH
Q 011845          244 EIDPRHQPVWIAWGWME  260 (476)
Q Consensus       244 ~~~~~~~~~~~~l~~~~  260 (476)
                      ..+|++...+..+-.++
T Consensus       247 ~rnPdn~~Yy~~l~~~l  263 (700)
T KOG1156|consen  247 ERNPDNLDYYEGLEKAL  263 (700)
T ss_pred             hhCchhHHHHHHHHHHH
Confidence            66666655555444444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.88  E-value=1.6e-18  Score=158.45  Aligned_cols=376  Identities=13%  Similarity=0.101  Sum_probs=277.1

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA   82 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~   82 (476)
                      +|+.+|..++.+-..|..+...|+-++|....+.++..+ +.+...|..+|.++....+|++|+.+|..++...|+|..+
T Consensus        33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qi  111 (700)
T KOG1156|consen   33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQI  111 (700)
T ss_pred             HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            467899999999999999999999999999999999877 8899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCc-----hhHHHHH
Q 011845           83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN---PKS-----CASWIAW  154 (476)
Q Consensus        83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~-----~~~~~~l  154 (476)
                      |..++.+..+.++++.....-.+.++..|.....|...+..+...|++..|..+.+...+..   |+.     .......
T Consensus       112 lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~  191 (700)
T KOG1156|consen  112 LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ  191 (700)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888877654   222     1233334


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 011845          155 SQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANL  234 (476)
Q Consensus       155 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  234 (476)
                      ..+....|.+++|.+.+..--...-+........+.++..++++++|..+|...+..+|++...+..+-.++..-.+.-+
T Consensus       192 n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~  271 (700)
T KOG1156|consen  192 NQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLE  271 (700)
T ss_pred             HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHH
Confidence            44555556655555555443322223333444556666666666666666666666666665443333322210000000


Q ss_pred             HH-H--------------------------------------------------------------HHHHH-------hc
Q 011845          235 AR-K--------------------------------------------------------------LFRRA-------SE  244 (476)
Q Consensus       235 A~-~--------------------------------------------------------------~~~~~-------~~  244 (476)
                      +. .                                                              ++++.       +.
T Consensus       272 ~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~  351 (700)
T KOG1156|consen  272 ALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLS  351 (700)
T ss_pred             HHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcc
Confidence            00 0                                                              11111       11


Q ss_pred             cC------------CCCHHHH--HHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845          245 ID------------PRHQPVW--IAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLF  310 (476)
Q Consensus       245 ~~------------~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  310 (476)
                      -.            |-...+|  +.++.-+...|+++.|..+++.++...|+.   .+.+..-|.++...|++++|..++
T Consensus       352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl---iEly~~KaRI~kH~G~l~eAa~~l  428 (700)
T KOG1156|consen  352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL---IELYLVKARIFKHAGLLDEAAAWL  428 (700)
T ss_pred             cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH---HHHHHHHHHHHHhcCChHHHHHHH
Confidence            10            1122233  457777888999999999999999988876   445777799999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc------------chhhhhhhhcccchHHHHHHHHH
Q 011845          311 RSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV------------DDASWVMGFMDIIDPALDRIKQL  378 (476)
Q Consensus       311 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~~~g~~~~A~~~~~~a  378 (476)
                      ..+.+++-.|..+-..-+.-..+..+.++|.++...+........            ..-|..|..+|++..|++-|..+
T Consensus       429 ~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  429 DEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             HHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            999999887777777788888999999999998887776443222            23456777888888888877666


Q ss_pred             hccc
Q 011845          379 LNLE  382 (476)
Q Consensus       379 l~~~  382 (476)
                      -++.
T Consensus       509 ~k~~  512 (700)
T KOG1156|consen  509 EKHY  512 (700)
T ss_pred             HHHH
Confidence            5543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.88  E-value=1.7e-20  Score=178.42  Aligned_cols=341  Identities=14%  Similarity=0.119  Sum_probs=270.3

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc--
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH--   79 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--   79 (476)
                      ++++++|.-+.++..+|.+|....+...|..+|.++.+.+ +.+...+-..+..|....+++.|..+.-.+-+..|..  
T Consensus       483 ~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~  561 (1238)
T KOG1127|consen  483 RALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC  561 (1238)
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence            6788999999999999999998889999999999999998 8888889889999999889988888866666655543  


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845           80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM  159 (476)
Q Consensus        80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  159 (476)
                      ...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..+.|.+.-..+..+.+..
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC  641 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence            35666788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhccHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------
Q 011845          160 QQENNLAARQLFERAVQASPKN-------RFAWHVWGIFEANMGFIDKGKKLLKIGHAV---------------------  211 (476)
Q Consensus       160 ~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------  211 (476)
                      ..|+|.+|+..+...+......       .+.+...+..+...|-...|...+++.++.                     
T Consensus       642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd  721 (1238)
T KOG1127|consen  642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD  721 (1238)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Confidence            8888888888887776654332       233333333333334333343333333210                     


Q ss_pred             --------C----------------------CC-------------------CHHHHHHHHHHHHH--------cCCHHH
Q 011845          212 --------N----------------------PR-------------------DPVLLQSLALLEYK--------YSTANL  234 (476)
Q Consensus       212 --------~----------------------~~-------------------~~~~~~~la~~~~~--------~~~~~~  234 (476)
                              .                      |+                   ++..|+++|..|++        ..+...
T Consensus       722 ac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~  801 (1238)
T KOG1127|consen  722 ACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT  801 (1238)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence                    0                      11                   12357777777665        223357


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845          235 ARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSL  314 (476)
Q Consensus       235 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  314 (476)
                      |+.++.++++...++...|..+|.+ ...|++.-|..+|-+.....|....   .|.++|.++.+..+++.|...|.++.
T Consensus       802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~---~W~NlgvL~l~n~d~E~A~~af~~~q  877 (1238)
T KOG1127|consen  802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC---QWLNLGVLVLENQDFEHAEPAFSSVQ  877 (1238)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh---heeccceeEEecccHHHhhHHHHhhh
Confidence            8999999999999999999999988 5668999999999999999888844   47888999999999999999999999


Q ss_pred             hhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 011845          315 NINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY  347 (476)
Q Consensus       315 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  347 (476)
                      .++|.+...|...+.+....|+.-++..++...
T Consensus       878 SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs  910 (1238)
T KOG1127|consen  878 SLDPLNLVQWLGEALIPEAVGRIIERLILFAHS  910 (1238)
T ss_pred             hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999888888877763

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.88  E-value=8e-20  Score=146.54  Aligned_cols=202  Identities=20%  Similarity=0.157  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      +...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|..++.+
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011845          162 ENNLAARQLFERAVQA--SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLF  239 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  239 (476)
                      |++++|...|++++..  .+..+..+.++|.|..+.|+++.|...|+++++.+|+.+.....++..++..|++..|..++
T Consensus       117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~  196 (250)
T COG3063         117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL  196 (250)
T ss_pred             CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence            5555555555554432  12333444444555555555555555555555555544444444444444455554454444


Q ss_pred             HHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845          240 RRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT  283 (476)
Q Consensus       240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  283 (476)
                      ++.....+-....+.....+....|+-+.|-++=.+.....|..
T Consensus       197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            44444444334444444444444444444444444444444444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.87  E-value=9.3e-20  Score=159.43  Aligned_cols=197  Identities=16%  Similarity=0.125  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA  125 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  125 (476)
                      +..+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            44555556666666666666666666655555555555555666666666666666666665555555555555555555


Q ss_pred             HhccHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 011845          126 KANRYEQARNLFRQATKCN--PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK  203 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  203 (476)
                      ..|++++|+..+++++...  +.....+..+|.++...|++++|...+.+++...|.++..+..++.++...|++++|..
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555555555432  22333444455555555555555555555555555444444455555555555555555


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845          204 LLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA  242 (476)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  242 (476)
                      .+++++...|.++..+..++.++...|+.++|..+.+.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            555544444444444444444444444444444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.87  E-value=9.5e-20  Score=146.11  Aligned_cols=206  Identities=13%  Similarity=0.044  Sum_probs=150.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA  125 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  125 (476)
                      ..+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++++.|++.+++.+.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            34566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhccHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 011845          126 KANRYEQARNLFRQATKCN--PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK  203 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  203 (476)
                      .+|++++|...|++++..-  +..+.++.++|.|..+.|+++.|...|+++++.+|+.+.....++..++..|++..|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            7777777777777777642  34456777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 011845          204 LLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP  251 (476)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  251 (476)
                      ++++.....+.....+.....+....|+-+.+-.+=.+.....|...+
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e  242 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE  242 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            777777766666666666667777777777777666666666776654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.87  E-value=1e-19  Score=159.14  Aligned_cols=198  Identities=23%  Similarity=0.229  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845           80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM  159 (476)
Q Consensus        80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  159 (476)
                      ...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011845          160 QQENNLAARQLFERAVQAS--PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARK  237 (476)
Q Consensus       160 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  237 (476)
                      ..|++++|+..+++++...  +.....+..+|.++...|++++|...+.+++...|.++..+..+|.++...|++++|..
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666665532  23344455555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011845          238 LFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL  277 (476)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  277 (476)
                      .+++++...|.++..+..++.++...|+.++|..+.+.+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            5555555544444555555555555555555555444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=7.7e-20  Score=158.29  Aligned_cols=270  Identities=16%  Similarity=0.072  Sum_probs=170.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL   91 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   91 (476)
                      +-....|..++.+.+|.+|+..|..+++.. |+++..|...+.+++..|++++|.-..++.+.++|.........+.++.
T Consensus        50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~  128 (486)
T KOG0550|consen   50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL  128 (486)
T ss_pred             HHHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence            344566777777888888888888888887 7778888888888888888888888888888888887777777777777


Q ss_pred             HhCCHHHHHHHHHHhh------------ccC------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH
Q 011845           92 RQGNIKKARQLLAKGL------------KFC------GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA  153 (476)
Q Consensus        92 ~~~~~~~A~~~~~~~~------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  153 (476)
                      ..++..+|...++..-            .+-      |....+....+.|+...|++++|...--..+++++.+.++++.
T Consensus       129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v  208 (486)
T KOG0550|consen  129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV  208 (486)
T ss_pred             hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence            7777777665554111            000      1112333445556666666666666666666666666666666


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----H
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNR------------FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP----V  217 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~  217 (476)
                      .|.+++..++.+.|+..|++++.++|+..            ..|..-|.-.++.|++..|.++|..++.++|.+.    .
T Consensus       209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak  288 (486)
T KOG0550|consen  209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK  288 (486)
T ss_pred             cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence            66666666666666666666666666542            2334445555555666666666666666655542    2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845          218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                      .|.+.+.+..+.|+..+|+..++.+++++|....++...|.++...+++++|++.|+++++...+
T Consensus       289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            45555555555566666666666666666555555555566666666666666666665555443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.86  E-value=3e-18  Score=143.93  Aligned_cols=268  Identities=17%  Similarity=0.108  Sum_probs=124.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-----HHHHHHHHHHHHHh
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN-----EYIYQTLALLEAKA  127 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~  127 (476)
                      |.-+.-..+.++|+..|..+++.+|...++...+|.++...|..+.|+.+-+..+.. |+-     ..+...+|.-|...
T Consensus        42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~a  120 (389)
T COG2956          42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAA  120 (389)
T ss_pred             HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHh
Confidence            333334445555555555555555555555555555555555555555554444332 221     12344455555555


Q ss_pred             ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI  207 (476)
Q Consensus       128 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  207 (476)
                      |-++.|...|........--..+...+..+|....+|++|+..-++..++.+.....  .+                   
T Consensus       121 Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~--eI-------------------  179 (389)
T COG2956         121 GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV--EI-------------------  179 (389)
T ss_pred             hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh--HH-------------------
Confidence            555555555555444333333444455555555555555555555555444432100  00                   


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHH
Q 011845          208 GHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA  287 (476)
Q Consensus       208 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  287 (476)
                              ...+..++..+....+.+.|+..+.++++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+..  .
T Consensus       180 --------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--~  249 (389)
T COG2956         180 --------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--S  249 (389)
T ss_pred             --------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH--H
Confidence                    123334444444444555555555555555555555555555555555555555555555555544432  2


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh
Q 011845          288 RCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE  353 (476)
Q Consensus       288 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  353 (476)
                      .++..+..+|.+.|+.++...++.++.+..++.. +-..++.+.....-.+.|...+.+-+...|.
T Consensus       250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt  314 (389)
T COG2956         250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLIELQEGIDAAQAYLTRQLRRKPT  314 (389)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence            2344444555555555555555555554443322 2233333333333344444444444444443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.86  E-value=2.6e-19  Score=170.54  Aligned_cols=386  Identities=15%  Similarity=0.144  Sum_probs=242.8

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQG-ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI   80 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~   80 (476)
                      ++.+++|.+++++-..+..|.+..+++.|..+.-.+-+..+. .....|..+|..|...++...|+..|+.++..+|.+.
T Consensus       517 KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~  596 (1238)
T KOG1127|consen  517 KAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY  596 (1238)
T ss_pred             HHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH
Confidence            567889999999999999999999999998886655444311 1234566788888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh-----------
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA-----------  149 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------  149 (476)
                      ..|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|.|.+|+..+...+........           
T Consensus       597 n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir  676 (1238)
T KOG1127|consen  597 NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR  676 (1238)
T ss_pred             HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            999999999999999999999999999999988888888888888888888888777766554221111           


Q ss_pred             --------------------------------------------------------------------------------
Q 011845          150 --------------------------------------------------------------------------------  149 (476)
Q Consensus       150 --------------------------------------------------------------------------------  149 (476)
                                                                                                      
T Consensus       677 ~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d  756 (1238)
T KOG1127|consen  677 DAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKND  756 (1238)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchh
Confidence                                                                                            


Q ss_pred             --------------------HHHHHHHHHHH--------hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH
Q 011845          150 --------------------SWIAWSQMEMQ--------QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKG  201 (476)
Q Consensus       150 --------------------~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  201 (476)
                                          .|+++|..|++        ..+...|+.++.+++++..++...|..+|.+ ...|++.-|
T Consensus       757 ~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~a  835 (1238)
T KOG1127|consen  757 LLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACA  835 (1238)
T ss_pred             HHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhh
Confidence                                13333333332        0112245555555555555555555555544 333555555


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845          202 KKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS  281 (476)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  281 (476)
                      ..+|-+.+...|.....|.++|.++....+++.|...|.++..++|.+...|...+.+....|+.-++...|........
T Consensus       836 QHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~  915 (1238)
T KOG1127|consen  836 QHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS  915 (1238)
T ss_pred             hhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555544222211


Q ss_pred             CChhH--HHHHHHHHHHHHHhCCHHHHHHH----------HHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          282 TTESA--ARCLQAWGVLEQRVGNLSAARRL----------FRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       282 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~----------~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      .....  ...+..--......|++++-+..          .++.+...|+...++...+....+++.+..|.+...+.+.
T Consensus       916 ~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig  995 (1238)
T KOG1127|consen  916 KEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG  995 (1238)
T ss_pred             cccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            11111  11122222333344444443332          3334445677777787888888888877777776666543


Q ss_pred             ---------hhhhhcch-------------------------------hhhhhhhcccchHHHHHHHHHhccccCCCCC
Q 011845          350 ---------QRTEVVDD-------------------------------ASWVMGFMDIIDPALDRIKQLLNLEKSSYKE  388 (476)
Q Consensus       350 ---------~~~~~~~~-------------------------------~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  388 (476)
                               +.+.+...                               .....+..++++++.+.|++++.+..++...
T Consensus       996 lLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~ 1074 (1238)
T KOG1127|consen  996 LLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDK 1074 (1238)
T ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccch
Confidence                     01101111                               1123455778999999999999987776653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.9e-17  Score=139.20  Aligned_cols=266  Identities=16%  Similarity=0.103  Sum_probs=210.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc-----HHHHHHHHHH
Q 011845           15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-----IAAWHGWAVL   89 (476)
Q Consensus        15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~   89 (476)
                      +..|.-++-..+.++|+..|-.+++.+ |...++...+|.++.+.|..+.|+.+-+..+.. |+-     ..+...+|.-
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHH
Confidence            445666677889999999999999987 889999999999999999999999998887754 433     3577889999


Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch-----hHHHHHHHHHHHhccH
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC-----ASWIAWSQMEMQQENN  164 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~  164 (476)
                      |+..|-++.|..+|........--..+...+..+|....+|++|++.-++..++.+...     ..+..++..+....+.
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            99999999999999999877666678999999999999999999999999999987653     3566677777777888


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845          165 LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD-PVLLQSLALLEYKYSTANLARKLFRRAS  243 (476)
Q Consensus       165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~  243 (476)
                      +.|+..+.++++.+|++..+-..+|.++...|+++.|++.++.+++.+|.. +.+...+..+|...|+.++.+..+.++.
T Consensus       197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~  276 (389)
T COG2956         197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM  276 (389)
T ss_pred             HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888887765 4456666777777777777777777777


Q ss_pred             ccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845          244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT  283 (476)
Q Consensus       244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  283 (476)
                      +..++. .+-..++..-....-.+.|..++.+-+...|+-
T Consensus       277 ~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~  315 (389)
T COG2956         277 ETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPTM  315 (389)
T ss_pred             HccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence            666553 344444444444455566666666666666653

>PLN02789 farnesyltranstransferase

Probab=99.85  E-value=7.2e-19  Score=156.62  Aligned_cols=223  Identities=12%  Similarity=0.046  Sum_probs=128.6

Q ss_pred             CCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccH--HHHHHH
Q 011845           60 GNIGKARELFDASTVADKGHIAAWHGWAVLELRQG-NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRY--EQARNL  136 (476)
Q Consensus        60 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~--~~A~~~  136 (476)
                      +++++|+..+.++++.+|.+..+|...+.++...| ++++++..+.++++.+|++..+|...+.++...|+.  ++++.+
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~  130 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF  130 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence            45555556666666666666666666655555555 355666666666666666666666555555555542  455555


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHH
Q 011845          137 FRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM---GFI----DKGKKLLKIGH  209 (476)
Q Consensus       137 ~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~~~  209 (476)
                      ++++++.+|.+..+|...+.++...|++++++..+.++++.+|.+..+|+..+.++...   |.+    ++++.+..+++
T Consensus       131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI  210 (320)
T PLN02789        131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI  210 (320)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666655555443   212    34555555666


Q ss_pred             hcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC------------------Chh
Q 011845          210 AVNPRDPVLLQSLALLEYK----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG------------------NLD  267 (476)
Q Consensus       210 ~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~  267 (476)
                      ..+|++..+|..++.++..    .++..+|+..+.+++...|.++.++..++.++....                  ..+
T Consensus       211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (320)
T PLN02789        211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDST  290 (320)
T ss_pred             HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHH
Confidence            6666666666666666555    233445666666666666666666666666665421                  235


Q ss_pred             HHHHHHHHHHccCCC
Q 011845          268 TARELYERALSIDST  282 (476)
Q Consensus       268 ~A~~~~~~a~~~~~~  282 (476)
                      +|..+++..-+.+|-
T Consensus       291 ~a~~~~~~l~~~d~i  305 (320)
T PLN02789        291 LAQAVCSELEVADPM  305 (320)
T ss_pred             HHHHHHHHHHhhCcH
Confidence            677777776444443

>PLN02789 farnesyltranstransferase

Probab=99.85  E-value=1.2e-18  Score=155.28  Aligned_cols=234  Identities=13%  Similarity=0.057  Sum_probs=191.6

Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH--HH
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN-RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN--LA  166 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~--~~  166 (476)
                      +...++.++|+..+.++++++|.+..+|...+.++...| ++++++..++++++.+|++..+|...+.++...|+.  ++
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            334567788888899999999999999999999998888 678999999999999999999999998888888764  67


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCH----HHHHHHH
Q 011845          167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY---STA----NLARKLF  239 (476)
Q Consensus       167 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~----~~A~~~~  239 (476)
                      ++.+++++++.+|.+..+|...+.++...|+++++++.+.++++.+|.+..+|...+.+....   |.+    ++++.+.
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~  206 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT  206 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence            888899999999999999999999999999999999999999999999999999988887765   223    4678888


Q ss_pred             HHHhccCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhC--------------
Q 011845          240 RRASEIDPRHQPVWIAWGWMEWK----EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG--------------  301 (476)
Q Consensus       240 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g--------------  301 (476)
                      .+++..+|++..+|..++.++..    .++..+|...+.+++...|.+..+   +..++.+|....              
T Consensus       207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~a---l~~l~d~~~~~~~~~~~~~~~~~~~~  283 (320)
T PLN02789        207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFA---LSDLLDLLCEGLQPTAEFRDTVDTLA  283 (320)
T ss_pred             HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHH---HHHHHHHHHhhhccchhhhhhhhccc
Confidence            89999999999999999888877    355677888888888887777544   455577776532              


Q ss_pred             ----CHHHHHHHHHHHHhhCCCcHHHHHH
Q 011845          302 ----NLSAARRLFRSSLNINSQSYITWMT  326 (476)
Q Consensus       302 ----~~~~A~~~~~~al~~~p~~~~~~~~  326 (476)
                          ..++|..+++..-+.+|=-...|..
T Consensus       284 ~~~~~~~~a~~~~~~l~~~d~ir~~yw~~  312 (320)
T PLN02789        284 EELSDSTLAQAVCSELEVADPMRRNYWAW  312 (320)
T ss_pred             cccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence                3478998888886667765555543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.85  E-value=1.9e-18  Score=160.47  Aligned_cols=240  Identities=19%  Similarity=0.200  Sum_probs=185.4

Q ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc----
Q 011845          110 CGGNEYIYQTLALLEAKANRYEQARNLFRQATKC--------NPKSCASWIAWSQMEMQQENNLAARQLFERAVQA----  177 (476)
Q Consensus       110 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----  177 (476)
                      .|....+...++..|...|++++|+..++.+++.        .|.-......+|.+|...+++.+|+.+|++++.+    
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            4555667777888888888888888888888887        4544455566888888888888888888888875    


Q ss_pred             ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 011845          178 ----SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN--------PRDPVLLQSLALLEYKYSTANLARKLFRRASEI  245 (476)
Q Consensus       178 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  245 (476)
                          +|....++.+++.+|...|++++|..++++++++.        |.-...+..++.++...+++++|..++++++++
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence                23345678888888888888888888888887653        222346777888888888999988888888765


Q ss_pred             C--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccC-----CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011845          246 D--------PRHQPVWIAWGWMEWKEGNLDTARELYERALSID-----STTESAARCLQAWGVLEQRVGNLSAARRLFRS  312 (476)
Q Consensus       246 ~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  312 (476)
                      .        +.-+..+.++|.+|..+|++++|.++|++++++.     ..+......+..+|..+.+.+++.+|...|.+
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence            2        2334678889999999999999999999988763     22333455677888888888888888888888


Q ss_pred             HHhh-------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          313 SLNI-------NSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       313 al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      +..+       .|+....+.+|+.+|..+|+++.|.++.+.+..
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            7665       345556788899999999999999988888775

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.84  E-value=3.2e-18  Score=158.94  Aligned_cols=239  Identities=17%  Similarity=0.142  Sum_probs=194.8

Q ss_pred             CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 011845          144 NPKSCASWIAWSQMEMQQENNLAARQLFERAVQA--------SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV----  211 (476)
Q Consensus       144 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  211 (476)
                      .|.-..+...++..|...|++++|+..++++++.        .|.-......+|.+|...+++.+|+.+|++++.+    
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            3555567777999999999999999999999987        4444555566999999999999999999999874    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845          212 ----NPRDPVLLQSLALLEYKYSTANLARKLFRRASEID--------PRHQPVWIAWGWMEWKEGNLDTARELYERALSI  279 (476)
Q Consensus       212 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  279 (476)
                          +|....++.+||.+|...|++++|..++++++++.        |.-...+..++.++..++++++|..++++++++
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence                23335578999999999999999999999988763        233456778899999999999999999998876


Q ss_pred             -----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845          280 -----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN--------SQSYITWMTWAQLEEDQGNSVRAEEIRNL  346 (476)
Q Consensus       280 -----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  346 (476)
                           .++++....++.++|.+|...|++++|.++|++++.+.        +.....+..++..+.+.+.+.+|..+|..
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence                 45565778889999999999999999999999999863        33346778899999999999999998888


Q ss_pred             HHhhhh----------hhcchhhhhhhhcccchHHHHHHHHHhccc
Q 011845          347 YFQQRT----------EVVDDASWVMGFMDIIDPALDRIKQLLNLE  382 (476)
Q Consensus       347 ~~~~~~----------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  382 (476)
                      +.....          ..+.+++-+|..+|++++|+++.++++...
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~  480 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR  480 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            876432          123568889999999999999999888643

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.84  E-value=1.5e-17  Score=154.97  Aligned_cols=310  Identities=15%  Similarity=0.019  Sum_probs=213.0

Q ss_pred             cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845            6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQG--ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus         6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      .+|+++.++..+|..+...|+++.|...+.++....++  +..+.....+.++...|++++|...+++++..+|.+..++
T Consensus         1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~   80 (355)
T cd05804           1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL   80 (355)
T ss_pred             CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence            37999999999999999999999998888888766522  2345667778889999999999999999999999988776


Q ss_pred             HHHHHHHHHh----CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845           84 HGWAVLELRQ----GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM  159 (476)
Q Consensus        84 ~~la~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  159 (476)
                      .. +..+...    +....+...+.......|.....+..+|.++...|++++|+..++++++..|+++.++..+|.++.
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~  159 (355)
T cd05804          81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE  159 (355)
T ss_pred             HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            64 4444444    444555555555445667777788888999999999999999999999999999889999999999


Q ss_pred             HhccHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHH---HHHHHHHHcC
Q 011845          160 QQENNLAARQLFERAVQASPKNR----FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--DPVLLQ---SLALLEYKYS  230 (476)
Q Consensus       160 ~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~---~la~~~~~~~  230 (476)
                      ..|++++|+.++++++...|.++    ..+..++.++...|++++|+..+++++...|.  ......   .+...+...|
T Consensus       160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  239 (355)
T cd05804         160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG  239 (355)
T ss_pred             HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence            99999999999999998876432    34567888999999999999999988766552  121111   1122222333


Q ss_pred             CHHHHHHH---HHHHhccCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC---C---hhHHHHHHHHHHHHHH
Q 011845          231 TANLARKL---FRRASEIDPR--HQPVWIAWGWMEWKEGNLDTARELYERALSIDST---T---ESAARCLQAWGVLEQR  299 (476)
Q Consensus       231 ~~~~A~~~---~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~---~~~~~~~~~l~~~~~~  299 (476)
                      ....+...   ........+.  ........+.++...|+.++|...++........   .   .....+....+.++..
T Consensus       240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~  319 (355)
T cd05804         240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA  319 (355)
T ss_pred             CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence            22222221   1111111111  1222235666667777777777777766543221   1   1112333445666677


Q ss_pred             hCCHHHHHHHHHHHHhh
Q 011845          300 VGNLSAARRLFRSSLNI  316 (476)
Q Consensus       300 ~g~~~~A~~~~~~al~~  316 (476)
                      .|++++|...+..++..
T Consensus       320 ~g~~~~A~~~L~~al~~  336 (355)
T cd05804         320 EGNYATALELLGPVRDD  336 (355)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            77777777777776643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3.8e-19  Score=154.07  Aligned_cols=270  Identities=13%  Similarity=0.051  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      .-....|..+++..+|.+|+..+..++...|++...|...+..++..|++++|.-..++.+++.|.....+...+.++..
T Consensus        50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a  129 (486)
T KOG0550|consen   50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA  129 (486)
T ss_pred             HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence            34456677888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccHHHHHHHHHHHH------------hcC------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHH
Q 011845          127 ANRYEQARNLFRQAT------------KCN------PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVW  188 (476)
Q Consensus       127 ~g~~~~A~~~~~~~~------------~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  188 (476)
                      .++..+|.+.++..-            .+.      |....+....+.++...|++++|...--..+++++.+.++++..
T Consensus       130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr  209 (486)
T KOG0550|consen  130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVR  209 (486)
T ss_pred             hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhc
Confidence            888888876665221            001      11223445556777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH----HH
Q 011845          189 GIFEANMGFIDKGKKLLKIGHAVNPRDPV------------LLQSLALLEYKYSTANLARKLFRRASEIDPRHQ----PV  252 (476)
Q Consensus       189 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~  252 (476)
                      |.++...++.+.|+..|++++.++|++..            .+..-|.-.++.|++..|.+.|..++.++|++.    ..
T Consensus       210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl  289 (486)
T KOG0550|consen  210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL  289 (486)
T ss_pred             ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence            77777777777777777777777776533            344556666677777777777777777777543    45


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845          253 WIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ  319 (476)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  319 (476)
                      |.+.+.+..+.|+..+|+...+.++.+++..   ...+...|.|+..++++++|++.|+++++...+
T Consensus       290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~sy---ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  290 YGNRALVNIRLGRLREAISDCNEALKIDSSY---IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHhHhhhcccCCchhhhhhhhhhhhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            6667777777777777777777777776655   334566677777777777777777777766544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.83  E-value=1.1e-16  Score=149.28  Aligned_cols=308  Identities=14%  Similarity=-0.013  Sum_probs=202.5

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHH
Q 011845           43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQT  119 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  119 (476)
                      |+.+..+..+|.++...|+.+.+...+.++....|.+   .+.....+.++...|++++|...++++++..|.+..++..
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~   82 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL   82 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            7778888888888888888888888888877666544   4556677888888888888888888888888888766654


Q ss_pred             HHHHHHHhcc----HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 011845          120 LALLEAKANR----YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM  195 (476)
Q Consensus       120 la~~~~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  195 (476)
                       +..+...|+    ...+...+.......|.....+..+|.++...|++++|...++++++..|+++.++..++.++...
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~  161 (355)
T cd05804          83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence             444444443    334444443333445555666677788888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CHHHHH---HHHHHHHHcCCh
Q 011845          196 GFIDKGKKLLKIGHAVNPRDP----VLLQSLALLEYKYSTANLARKLFRRASEIDPR--HQPVWI---AWGWMEWKEGNL  266 (476)
Q Consensus       196 ~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~---~l~~~~~~~g~~  266 (476)
                      |++++|+..+++++...|.++    ..+..++.++...|++++|+..|++++...|.  ......   .+...+...|..
T Consensus       162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  241 (355)
T cd05804         162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV  241 (355)
T ss_pred             CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence            888888888888888766432    24557888888888888888888888766552  111111   122222334433


Q ss_pred             hHHHHH--H-HHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHc
Q 011845          267 DTAREL--Y-ERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ---------SYITWMTWAQLEEDQ  334 (476)
Q Consensus       267 ~~A~~~--~-~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~  334 (476)
                      ..+..+  + .......+.. .....-...+.++...|+.++|...++........         ...+....+.++...
T Consensus       242 ~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~  320 (355)
T cd05804         242 DVGDRWEDLADYAAWHFPDH-GLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE  320 (355)
T ss_pred             ChHHHHHHHHHHHHhhcCcc-cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence            333332  1 1111111221 11111224577777788888888887776543211         234456666777777


Q ss_pred             CChHHHHHHHHHHHhhhh
Q 011845          335 GNSVRAEEIRNLYFQQRT  352 (476)
Q Consensus       335 g~~~~A~~~~~~~~~~~~  352 (476)
                      |++++|.+.+..++....
T Consensus       321 g~~~~A~~~L~~al~~a~  338 (355)
T cd05804         321 GNYATALELLGPVRDDLA  338 (355)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            777777777777665443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=2.8e-16  Score=133.84  Aligned_cols=367  Identities=11%  Similarity=-0.008  Sum_probs=217.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--------------cCc-
Q 011845           13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTV--------------ADK-   77 (476)
Q Consensus        13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------------~~p-   77 (476)
                      .-.-+|.+++..|+|++|+..|+-+.... ..+.+.+..+|.|++-.|.|.+|..+-.++-+              .+. 
T Consensus        59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE  137 (557)
T KOG3785|consen   59 LQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE  137 (557)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence            34456677777777777777777776654 45566777777777777777777766655421              000 


Q ss_pred             -----------CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845           78 -----------GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK  146 (476)
Q Consensus        78 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  146 (476)
                                 +..+-...++.+.+..-.|++|+++|.+++..+|+...+-..++.||.++.-++-+.+++.-.++..|+
T Consensus       138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence                       001122344555555556666666666666666666666666666666666666666666666666666


Q ss_pred             chhHHHHHHHHHHHh--ccHH----------------HHHHHHH----------HHHHcCCC----cHHHHHHHHHHHHH
Q 011845          147 SCASWIAWSQMEMQQ--ENNL----------------AARQLFE----------RAVQASPK----NRFAWHVWGIFEAN  194 (476)
Q Consensus       147 ~~~~~~~la~~~~~~--~~~~----------------~A~~~~~----------~a~~~~~~----~~~~~~~l~~~~~~  194 (476)
                      ++.+....+...++.  |+..                .+..+++          -+++.-|.    -|++..+++..|..
T Consensus       218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~  297 (557)
T KOG3785|consen  218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN  297 (557)
T ss_pred             cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc
Confidence            665555554444332  1111                1111111          01111121    13555566666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---hccC------CCCHHHHHHHHHHHHHcCC
Q 011845          195 MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA---SEID------PRHQPVWIAWGWMEWKEGN  265 (476)
Q Consensus       195 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~---~~~~------~~~~~~~~~l~~~~~~~g~  265 (476)
                      +++..+|..+++   ..+|..|.-+...|.+....|+--...+.++.+   +++-      -+.......++.+++-..+
T Consensus       298 q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~q  374 (557)
T KOG3785|consen  298 QNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQ  374 (557)
T ss_pred             cccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH
Confidence            666666666554   345666666666666666555433222222211   1111      1122334455666666666


Q ss_pred             hhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHcCChHHHHHHH
Q 011845          266 LDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN-SQSYITWMTWAQLEEDQGNSVRAEEIR  344 (476)
Q Consensus       266 ~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~  344 (476)
                      +++.+.++...-....++..   ..+++++++...|++.+|.+.|-+.-... .+.......+++||.+.+.++-|.+++
T Consensus       375 FddVl~YlnSi~sYF~NdD~---Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~  451 (557)
T KOG3785|consen  375 FDDVLTYLNSIESYFTNDDD---FNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM  451 (557)
T ss_pred             HHHHHHHHHHHHHHhcCcch---hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence            77777666655554444433   35678999999999999999998775544 333445578899999999999998886


Q ss_pred             HHHHhhhh--hhcchhhhhhhhcccchHHHHHHHHHhccccCCC
Q 011845          345 NLYFQQRT--EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSY  386 (476)
Q Consensus       345 ~~~~~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  386 (476)
                      -+.-....  ......+..++..+.+-=|.+.|...-.++|+-.
T Consensus       452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE  495 (557)
T KOG3785|consen  452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE  495 (557)
T ss_pred             HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence            55433222  2335567777788888888888888888888643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=7.7e-15  Score=133.28  Aligned_cols=346  Identities=13%  Similarity=0.094  Sum_probs=238.7

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      +++...|++..+......++++.++|++|+...+.-....  ......+..|.|.++.+..++|+..++   ..++.+..
T Consensus        37 Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~  111 (652)
T KOG2376|consen   37 KILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDK  111 (652)
T ss_pred             HHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHHHHHHh---cccccchH
Confidence            4567789999999999999999999999996665542211  122233788999999999999999999   34566677


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCC------------------------------C-cHHHHHHHHHHHHHhccH
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCG------------------------------G-NEYIYQTLALLEAKANRY  130 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------------------------------~-~~~~~~~la~~~~~~g~~  130 (476)
                      +....|.+++++|+|++|..+|+...+.+.                              . +.+.+++.+.++...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            888999999999999999999998865422                              1 345678899999999999


Q ss_pred             HHHHHHHHHHHhcCC-------Cc--------hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHH-----------
Q 011845          131 EQARNLFRQATKCNP-------KS--------CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFA-----------  184 (476)
Q Consensus       131 ~~A~~~~~~~~~~~p-------~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------  184 (476)
                      .+|++.+++++++..       .+        ..+...++.++..+|+.++|...|...+..+|.+...           
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~  271 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVAL  271 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhh
Confidence            999999999954421       11        2256788999999999999999999999887755311           


Q ss_pred             --------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011845          185 --------------------------------------WHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE  226 (476)
Q Consensus       185 --------------------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  226 (476)
                                                            +.+.+.+....+.-+.+.+...+.-...|.............
T Consensus       272 ~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~  351 (652)
T KOG2376|consen  272 SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATK  351 (652)
T ss_pred             ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHH
Confidence                                                  111122222223333333333222222333222222233333


Q ss_pred             HHcCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCChhHHHHHHH--------HHHccCCCChhHHHHHHHHHHHH
Q 011845          227 YKYSTANLARKLFRRASEIDPRH-QPVWIAWGWMEWKEGNLDTARELYE--------RALSIDSTTESAARCLQAWGVLE  297 (476)
Q Consensus       227 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~--------~a~~~~~~~~~~~~~~~~l~~~~  297 (476)
                      .+...+.+|+.++....+.+|.. ..+.+.++.+...+|+++.|++.+.        ...+......    +...+-..+
T Consensus       352 ~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~----~V~aiv~l~  427 (652)
T KOG2376|consen  352 VREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG----TVGAIVALY  427 (652)
T ss_pred             HHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh----HHHHHHHHH
Confidence            33347888999999999999887 5678888999999999999999999        3333322221    122334555


Q ss_pred             HHhCCHHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcc
Q 011845          298 QRVGNLSAARRLFRSSLN-------INSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVD  356 (476)
Q Consensus       298 ~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  356 (476)
                      .+.++.+.|...+.+++.       ..+.-...+...+.+..+.|+.++|...++..++..+....
T Consensus       428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~  493 (652)
T KOG2376|consen  428 YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTD  493 (652)
T ss_pred             HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHH
Confidence            666665444444444443       33334456777888888899999999999999886664443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=2e-15  Score=128.75  Aligned_cols=353  Identities=14%  Similarity=0.012  Sum_probs=245.2

Q ss_pred             HHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHH
Q 011845           20 VLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKA   99 (476)
Q Consensus        20 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A   99 (476)
                      -+....+|..|+..++-....+..........+|.|++..|+|++|+..|.-+.+.+.-+.+.+..++.+++-.|.|.+|
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            34567899999999998876553333456677899999999999999999999987777789999999999999999999


Q ss_pred             HHHHHHhhcc--------------CC------------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH
Q 011845          100 RQLLAKGLKF--------------CG------------GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA  153 (476)
Q Consensus       100 ~~~~~~~~~~--------------~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  153 (476)
                      ..+..++-+.              +.            +..+-...++.+.+..-.|++|+++|.+++..+|+....-..
T Consensus       111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy  190 (557)
T KOG3785|consen  111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY  190 (557)
T ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence            9887766331              00            111223446666666777888888888888888887777778


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIG-------------------------  208 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------------------------  208 (476)
                      ++.+|.+..-++-+.+++.-.++..|+++.+....+...++.=+-..|....+..                         
T Consensus       191 ~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng  270 (557)
T KOG3785|consen  191 MALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG  270 (557)
T ss_pred             HHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence            8888888888888888888888888888777766666555432211121111111                         


Q ss_pred             ---HhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH---c
Q 011845          209 ---HAVNPR----DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL---S  278 (476)
Q Consensus       209 ---~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~---~  278 (476)
                         ++.-|.    -|++..+++..|.++++.++|+.+++   ..+|..|.-+...|.++...|+--...+.++-+.   +
T Consensus       271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffq  347 (557)
T KOG3785|consen  271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ  347 (557)
T ss_pred             ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence               111121    25567778888888888888887765   4578888878888888877776554444443332   2


Q ss_pred             cCCCChhH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh--
Q 011845          279 IDSTTESA---ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE--  353 (476)
Q Consensus       279 ~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--  353 (476)
                      +-..+...   .---..++.+++-..++++.+.++...-...-++....+++++.....|++.+|.+++-++......  
T Consensus       348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~  427 (557)
T KOG3785|consen  348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK  427 (557)
T ss_pred             HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh
Confidence            21111100   0012334677777788888888888777777788888899999999999999999987766543211  


Q ss_pred             --hcchhhhhhhhcccchHHHHHH
Q 011845          354 --VVDDASWVMGFMDIIDPALDRI  375 (476)
Q Consensus       354 --~~~~~~~~~~~~g~~~~A~~~~  375 (476)
                        ....++.+|...++.+-|-+.+
T Consensus       428 ~~Y~s~LArCyi~nkkP~lAW~~~  451 (557)
T KOG3785|consen  428 ILYKSMLARCYIRNKKPQLAWDMM  451 (557)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHH
Confidence              1234666777777777665544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.77  E-value=7.4e-15  Score=138.52  Aligned_cols=304  Identities=13%  Similarity=0.067  Sum_probs=230.3

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL   89 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~   89 (476)
                      ..++++....++...|++++|++.++...... .+...+....|.++.++|++++|...|..++..+|++...+..+..+
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~   81 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA   81 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            45778888999999999999999999876665 67788889999999999999999999999999999999999888888


Q ss_pred             HHHhC-----CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           90 ELRQG-----NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ-ARNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        90 ~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                      ..-..     +.+.-..+|++.....|....+... ...+..-..+.. +..++...+..  ..|.+...+-.+|....+
T Consensus        82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl-~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K  158 (517)
T PF12569_consen   82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL-PLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEK  158 (517)
T ss_pred             HhhhcccccccHHHHHHHHHHHHHhCccccchhHh-hcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhH
Confidence            73333     5677788899888888765433222 222222223433 34445555544  345566666566654443


Q ss_pred             HHHHHHHHHHHHHc---------------CCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011845          164 NLAARQLFERAVQA---------------SPKNR--FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE  226 (476)
Q Consensus       164 ~~~A~~~~~~a~~~---------------~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  226 (476)
                      ..-...++...+..               .|...  .+++.++..|...|++++|+.++++++...|..++.+...|.++
T Consensus       159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Karil  238 (517)
T PF12569_consen  159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARIL  238 (517)
T ss_pred             HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            33333333333221               11222  35578899999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh------hHHHHHHHHHHHHHHh
Q 011845          227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE------SAARCLQAWGVLEQRV  300 (476)
Q Consensus       227 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~~~l~~~~~~~  300 (476)
                      ...|++.+|...++.+..+++.+-.+-...+..+.+.|+.++|...+......+.+..      .........|.+|.+.
T Consensus       239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~  318 (517)
T PF12569_consen  239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ  318 (517)
T ss_pred             HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988888899999999999999999988766542111      1123345669999999


Q ss_pred             CCHHHHHHHHHHHHhhC
Q 011845          301 GNLSAARRLFRSSLNIN  317 (476)
Q Consensus       301 g~~~~A~~~~~~al~~~  317 (476)
                      |++..|++.|..+.+..
T Consensus       319 ~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  319 GDYGLALKRFHAVLKHF  335 (517)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            99999999999887763

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.77  E-value=1.7e-14  Score=125.45  Aligned_cols=293  Identities=11%  Similarity=0.066  Sum_probs=202.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC-cHHHHHHHHHHHHHhC
Q 011845           16 ALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG-HIAAWHGWAVLELRQG   94 (476)
Q Consensus        16 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~   94 (476)
                      .-|..-+..|+|.+|.....+.-+.. +.....+..-+.+..++|+++.|-.++.++-+..++ ........+.+...+|
T Consensus        89 ~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          89 NEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence            34555566788888888888876554 444445555667778888888888888888776433 3455667888888888


Q ss_pred             CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH---HHHHHH--HHHHhcc---HHH
Q 011845           95 NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS---WIAWSQ--MEMQQEN---NLA  166 (476)
Q Consensus        95 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~la~--~~~~~~~---~~~  166 (476)
                      +++.|...+.++++..|.++.+......+|...|++.+...++.++.+..--+..-   +-..+.  ++.+.++   .+.
T Consensus       168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g  247 (400)
T COG3071         168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG  247 (400)
T ss_pred             CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence            88888888888888888888888888888888888888888888877665322211   111111  1111222   222


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 011845          167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID  246 (476)
Q Consensus       167 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  246 (476)
                      -..+++..-..-..++.+...++.-+...|+.++|.+..+.+++..-+.. ....++  ...-+++..=++..++.++..
T Consensus       248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhC
Confidence            12233333333334567777788888888888888888888887665433 222222  235567777788888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          247 PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                      |+++..+..+|.++.+.+.+.+|..+|+.+++..|+...    +..+|.++.+.|+..+|.+.+++++..
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~----~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD----YAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh----HHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888777543    455688888888888888888887743

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.74  E-value=7.1e-16  Score=134.55  Aligned_cols=104  Identities=13%  Similarity=0.043  Sum_probs=56.4

Q ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh---HH
Q 011845           78 GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE---YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA---SW  151 (476)
Q Consensus        78 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~  151 (476)
                      ..+..++.+|..+...|++++|+..+++++...|.++   .+++.+|.++...|++++|+..|+++++..|+++.   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            3445555666666666666666666666665555543   34555566666666666666666666665555544   35


Q ss_pred             HHHHHHHHHh--------ccHHHHHHHHHHHHHcCCCc
Q 011845          152 IAWSQMEMQQ--------ENNLAARQLFERAVQASPKN  181 (476)
Q Consensus       152 ~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~  181 (476)
                      +.+|.++...        |++++|+..|++++..+|++
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence            5555555443        34444444444444444443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.74  E-value=1.5e-15  Score=149.27  Aligned_cols=291  Identities=7%  Similarity=-0.012  Sum_probs=203.8

Q ss_pred             CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHH
Q 011845           41 TQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL  120 (476)
Q Consensus        41 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  120 (476)
                      ..|.+..+|..++..+...+++++|+.+++..+..+|+...+++.+|.++.+.+++.++..+  .++...          
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~----------   93 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF----------   93 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc----------
Confidence            34667777777777777778888888888877777787777777777777777776555444  333332          


Q ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 011845          121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDK  200 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (476)
                          ....++ .+++++...+...+++..+++.+|.+|.++|+.++|...|+++++.+|+++.+..++|..|... +.++
T Consensus        94 ----~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         94 ----SQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             ----ccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence                223344 4445555555556667778888888888888888888888888888888888888888888877 8888


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccC
Q 011845          201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID  280 (476)
Q Consensus       201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  280 (476)
                      |+.++.+++..              +...+++..+..++.+.+..+|++.+.+..+-......-.+..+           
T Consensus       168 A~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~-----------  222 (906)
T PRK14720        168 AITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL-----------  222 (906)
T ss_pred             HHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh-----------
Confidence            88888877665              45566777888888888888887766655443322221112211           


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhh
Q 011845          281 STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASW  360 (476)
Q Consensus       281 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  360 (476)
                            ..++.-+-.+|...+++++++.+++.+++.+|.+..++..++.+|.  +.|.. ...++.+++..        .
T Consensus       223 ------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s--------~  285 (906)
T PRK14720        223 ------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS--------D  285 (906)
T ss_pred             ------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh--------c
Confidence                  2234444578889999999999999999999999999999999998  33333 34444444311        1


Q ss_pred             hhhhcccchHHHHHHHHHhccccCCCCCCCC
Q 011845          361 VMGFMDIIDPALDRIKQLLNLEKSSYKEPSA  391 (476)
Q Consensus       361 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  391 (476)
                      +-.....+..++..|++-+..+|++.--+..
T Consensus       286 l~~~~~~~~~~i~~fek~i~f~~G~yv~H~~  316 (906)
T PRK14720        286 IGNNRKPVKDCIADFEKNIVFDTGNFVYHRT  316 (906)
T ss_pred             cccCCccHHHHHHHHHHHeeecCCCEEEEcC
Confidence            1112245688999999999999998877763

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.73  E-value=1.3e-15  Score=132.97  Aligned_cols=108  Identities=14%  Similarity=-0.014  Sum_probs=64.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH---HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHH---HH
Q 011845           44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI---AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEY---IY  117 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~  117 (476)
                      ..+..++.+|..+...|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..++++++..|+++.   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            3455566666666666666666666666666665543   35566666666666666666666666666665443   45


Q ss_pred             HHHHHHHHHh--------ccHHHHHHHHHHHHhcCCCchhHH
Q 011845          118 QTLALLEAKA--------NRYEQARNLFRQATKCNPKSCASW  151 (476)
Q Consensus       118 ~~la~~~~~~--------g~~~~A~~~~~~~~~~~p~~~~~~  151 (476)
                      +.+|.++...        |++++|+..|++++..+|++...+
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence            5566666554        556666666666666666654443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.73  E-value=3.3e-14  Score=134.21  Aligned_cols=304  Identities=13%  Similarity=0.056  Sum_probs=229.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845           45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE  124 (476)
Q Consensus        45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  124 (476)
                      ..++....+.++...|++++|++.++.....-.+........|.++.++|++++|...|...+..+|++...+..+..+.
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            34677778899999999999999999988877888888889999999999999999999999999999999999888887


Q ss_pred             HHh-----ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH
Q 011845          125 AKA-----NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL-AARQLFERAVQASPKNRFAWHVWGIFEANMGFI  198 (476)
Q Consensus       125 ~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  198 (476)
                      ...     .+.+.-..+|++.....|....... +...+..-..+. .+..++...+..  .-|.++..+-.+|....+.
T Consensus        83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~  159 (517)
T PF12569_consen   83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKA  159 (517)
T ss_pred             hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHH
Confidence            333     2567788899998888886543322 212222222333 333444444433  3445555555555544443


Q ss_pred             HHHHHHHHHHHhc---------------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 011845          199 DKGKKLLKIGHAV---------------NPRDP--VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEW  261 (476)
Q Consensus       199 ~~A~~~~~~~~~~---------------~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (476)
                      .-...++......               .|...  .+++.+++.|...|++++|+.+.+++++..|..++.+...|.++.
T Consensus       160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK  239 (517)
T PF12569_consen  160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            3333333333211               11222  356888999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--Cc-----HHHH--HHHHHHHH
Q 011845          262 KEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS--QS-----YITW--MTWAQLEE  332 (476)
Q Consensus       262 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~-----~~~~--~~l~~~~~  332 (476)
                      ..|++.+|.+.++.+..+++.+..   +-...+..+.+.|+.++|.+.+......+.  ..     .-.|  ...|.++.
T Consensus       240 h~G~~~~Aa~~~~~Ar~LD~~DRy---iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~  316 (517)
T PF12569_consen  240 HAGDLKEAAEAMDEARELDLADRY---INSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL  316 (517)
T ss_pred             HCCCHHHHHHHHHHHHhCChhhHH---HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998844   355668899999999999999987765442  11     1134  56789999


Q ss_pred             HcCChHHHHHHHHHHHhhhhhh
Q 011845          333 DQGNSVRAEEIRNLYFQQRTEV  354 (476)
Q Consensus       333 ~~g~~~~A~~~~~~~~~~~~~~  354 (476)
                      +.|++..|...+..+.....++
T Consensus       317 r~~~~~~ALk~~~~v~k~f~~~  338 (517)
T PF12569_consen  317 RQGDYGLALKRFHAVLKHFDDF  338 (517)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888765544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.72  E-value=2.8e-13  Score=124.34  Aligned_cols=200  Identities=18%  Similarity=0.238  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------
Q 011845          150 SWIAWSQMEMQQENNLAARQLFERAVQASPKN----RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR-----------  214 (476)
Q Consensus       150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----------  214 (476)
                      .|..+|.+|...|+.+.|..+|+++.+..-..    ..+|...|.......+++.|+.+++++......           
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p  468 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP  468 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence            56677777777777777777777777654221    456777777777777777777777776543211           


Q ss_pred             -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC--CChh
Q 011845          215 -------DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS--TTES  285 (476)
Q Consensus       215 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~  285 (476)
                             +..+|..++.+....|-++....+|++.+.+.--.|.+..+.|..+....-++++.+.|++.+.+.+  ...+
T Consensus       469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d  548 (835)
T KOG2047|consen  469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD  548 (835)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence                   1235667777777778888888888888877777778888888888888888888888888888754  3333


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          286 AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY--ITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       286 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      .+..|......-...-..+.|...|+++++..|...  .++..++.+..+.|-...|+.+|+++..
T Consensus       549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            444444434444445578899999999999877432  4677788888888988888888888765

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.70  E-value=6.9e-13  Score=121.84  Aligned_cols=338  Identities=18%  Similarity=0.268  Sum_probs=268.8

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGE-----NPYIWQCWAVLENKLGNIGKARELFDASTVADK   77 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p   77 (476)
                      +|+.+|++...|.....++  .|+..+-+..|..+++.-.|.     -...|..+|..|...|+.+.|..+|+++...+-
T Consensus       341 lLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y  418 (835)
T KOG2047|consen  341 LLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY  418 (835)
T ss_pred             HHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence            4688999999999876655  688999999999999755443     246899999999999999999999999997653


Q ss_pred             Cc----HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC------------------CcHHHHHHHHHHHHHhccHHHHHH
Q 011845           78 GH----IAAWHGWAVLELRQGNIKKARQLLAKGLKFCG------------------GNEYIYQTLALLEAKANRYEQARN  135 (476)
Q Consensus        78 ~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------------------~~~~~~~~la~~~~~~g~~~~A~~  135 (476)
                      ..    ..+|...|..-++..+++.|+++++++...-.                  .+..+|..++.+....|-++....
T Consensus       419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~  498 (835)
T KOG2047|consen  419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA  498 (835)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence            32    57899999999999999999999999976521                  123578889999999999999999


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHh
Q 011845          136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQAS--PKNRFAWHVWGIFEA---NMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~  210 (476)
                      .|++++.+---.|....+.|..+....-++++.+.|++.+.+.  |.-.++|..+..-+.   ...+.+.|..+|+++++
T Consensus       499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~  578 (835)
T KOG2047|consen  499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD  578 (835)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence            9999999988889999999999999999999999999999886  455677765544333   23478999999999999


Q ss_pred             cCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHccCCCCh
Q 011845          211 VNPRD--PVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK----EGNLDTARELYERALSIDSTTE  284 (476)
Q Consensus       211 ~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~  284 (476)
                      .+|..  ..++..++.+....|-...|+.+|+++...-+..  -.+.+-.+|..    .=-......+|+++++.-|+..
T Consensus       579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~  656 (835)
T KOG2047|consen  579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSK  656 (835)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHH
Confidence            98843  2356778888888899999999999987654321  12222222221    1124567789999999988775


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CC-cHHHHHHHHHHHHHcCChHHHHHHHH
Q 011845          285 SAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN-SQ-SYITWMTWAQLEEDQGNSVRAEEIRN  345 (476)
Q Consensus       285 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~~  345 (476)
                      . ..+....+....+.|..+.|..+|.-+-++. |. +++.|..+-.+..+.|+-+.-.++++
T Consensus       657 ~-r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR  718 (835)
T KOG2047|consen  657 A-REMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR  718 (835)
T ss_pred             H-HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            5 4456688999999999999999999988875 43 45889999999999999665555543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.70  E-value=1e-12  Score=114.45  Aligned_cols=290  Identities=14%  Similarity=0.089  Sum_probs=191.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCC-cHHHHHHHHHHHHHhccH
Q 011845           52 WAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG-NEYIYQTLALLEAKANRY  130 (476)
Q Consensus        52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~  130 (476)
                      -|..-+..|+|.+|.....+.-+..+....++..-+.+..+.|+++.+-.++.++-+..++ ...+....+.+....|++
T Consensus        90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~  169 (400)
T COG3071          90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY  169 (400)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence            3455556788888888888877766666667777777888888888888888888877443 345667778888888888


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH-H--HHHHHHH--HHHHcCCHHHH---H
Q 011845          131 EQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR-F--AWHVWGI--FEANMGFIDKG---K  202 (476)
Q Consensus       131 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~--~~~~l~~--~~~~~~~~~~A---~  202 (476)
                      +.|.....++++..|.++.+.....++|...|++.....++.+.-+..--+. +  -+...+.  ++.+.++-+.+   .
T Consensus       170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~  249 (400)
T COG3071         170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK  249 (400)
T ss_pred             hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            8888888888888888888888888888888888888887777665432221 1  1111111  11111221111   2


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845          203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                      ..++..-..-..++.+...++.-+...|+.++|.++.+.+++..-+. .....++  ...-+++..=++..++.++..|+
T Consensus       250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~  326 (400)
T COG3071         250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKWLKQHPE  326 (400)
T ss_pred             HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHHHHhCCC
Confidence            23333322333456677777777777777777877777777765432 2111111  22456777777777777777777


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 011845          283 TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYF  348 (476)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  348 (476)
                      ++.   ++..+|.++.+.+.+.+|..+|+.+++..|+. ..+..++.++.+.|+..+|.++++..+
T Consensus       327 ~p~---L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         327 DPL---LLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             Chh---HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            753   46666777777777777777777777766653 446677777777777777777666554

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=2.6e-14  Score=116.57  Aligned_cols=184  Identities=17%  Similarity=0.189  Sum_probs=149.5

Q ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845           77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ  156 (476)
Q Consensus        77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  156 (476)
                      ++....+-....+....|+.+-|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+..++.....
T Consensus        49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA  128 (289)
T KOG3060|consen   49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA  128 (289)
T ss_pred             chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence            33344455666777788888888888888888788888888888888888888888888888888888888888887777


Q ss_pred             HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HH
Q 011845          157 MEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYST---AN  233 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~  233 (476)
                      +...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++..|.   ..
T Consensus       129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~  208 (289)
T KOG3060|consen  129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE  208 (289)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888888877764   45


Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHH
Q 011845          234 LARKLFRRASEIDPRHQPVWIAWGWME  260 (476)
Q Consensus       234 ~A~~~~~~~~~~~~~~~~~~~~l~~~~  260 (476)
                      -|.++|.++++++|.+...++.+-.+.
T Consensus       209 ~arkyy~~alkl~~~~~ral~GI~lc~  235 (289)
T KOG3060|consen  209 LARKYYERALKLNPKNLRALFGIYLCG  235 (289)
T ss_pred             HHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence            688888888888887767666654443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.69  E-value=1.6e-15  Score=119.87  Aligned_cols=122  Identities=11%  Similarity=-0.054  Sum_probs=65.1

Q ss_pred             HHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845           67 ELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK  146 (476)
Q Consensus        67 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  146 (476)
                      .+|+++++.+|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            3445555554443   3344555555555555555555555555555555555555555555555555555555555555


Q ss_pred             chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 011845          147 SCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIF  191 (476)
Q Consensus       147 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  191 (476)
                      ++.+++.+|.++...|++++|+..|++++...|+++..+..++.+
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            555555555555555555555555555555555555555444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=1.1e-13  Score=115.44  Aligned_cols=361  Identities=11%  Similarity=-0.009  Sum_probs=228.8

Q ss_pred             HHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHH
Q 011845           20 VLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKA   99 (476)
Q Consensus        20 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A   99 (476)
                      .+++..+|.+|++++..-.+.. |.+...+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+.+|
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA   97 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA   97 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence            3467788999999999888887 778888999999999999999999999999999999888888899999999999999


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Q 011845          100 RQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP  179 (476)
Q Consensus       100 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  179 (476)
                      +.+...+.....-.......-+.+.+..+++..+..+.++.-.  .+..+.....|.+.++.|+++.|++-|+.+++...
T Consensus        98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG  175 (459)
T KOG4340|consen   98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG  175 (459)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence            9988877653222223444445555566666666655554311  14556667777777777777777777777777776


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC----------------C---------HHHHHHHHHHHHHcC
Q 011845          180 KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV----NPR----------------D---------PVLLQSLALLEYKYS  230 (476)
Q Consensus       180 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~----------------~---------~~~~~~la~~~~~~~  230 (476)
                      -++-.-++++.++++.|+++.|+++..+.++.    .|.                +         ..+++..+.++++.+
T Consensus       176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~  255 (459)
T KOG4340|consen  176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR  255 (459)
T ss_pred             CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence            66667777777777777777777766655542    221                1         123445566667777


Q ss_pred             CHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 011845          231 TANLARKLFRRASEIDP--RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARR  308 (476)
Q Consensus       231 ~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  308 (476)
                      +++.|.+.+..+--...  -+|..+.+++..-. .+++.+...-++-.+.++|-.   .+.+.++-.+|++..-|+-|..
T Consensus       256 n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP---~ETFANlLllyCKNeyf~lAAD  331 (459)
T KOG4340|consen  256 NYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFP---PETFANLLLLYCKNEYFDLAAD  331 (459)
T ss_pred             cHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCC---hHHHHHHHHHHhhhHHHhHHHH
Confidence            77776665543322111  13445555543322 355555666666666666643   2234555555666555555554


Q ss_pred             HHHH------------------HHhhCCCcHH-HH---------------HHHHHHHHHc-CC----hHHHHHHHHHHHh
Q 011845          309 LFRS------------------SLNINSQSYI-TW---------------MTWAQLEEDQ-GN----SVRAEEIRNLYFQ  349 (476)
Q Consensus       309 ~~~~------------------al~~~p~~~~-~~---------------~~l~~~~~~~-g~----~~~A~~~~~~~~~  349 (476)
                      .+-+                  ++-..|.+++ +.               ..-+.+.... .+    ...|++-|+..++
T Consensus       332 vLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE  411 (459)
T KOG4340|consen  332 VLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLE  411 (459)
T ss_pred             HHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            4321                  1111222221 11               1111111111 11    2233444555666


Q ss_pred             hhhhhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845          350 QRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK  387 (476)
Q Consensus       350 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  387 (476)
                      ....+....+|++-...++.-+.+.|+...+.-.++..
T Consensus       412 ~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~  449 (459)
T KOG4340|consen  412 KYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDV  449 (459)
T ss_pred             HHHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccce
Confidence            66667777888888889999999999888876655443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.68  E-value=2.1e-15  Score=119.26  Aligned_cols=105  Identities=12%  Similarity=-0.042  Sum_probs=46.7

Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN  233 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  233 (476)
                      +|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|+++
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~  109 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG  109 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHH
Q 011845          234 LARKLFRRASEIDPRHQPVWIAWGW  258 (476)
Q Consensus       234 ~A~~~~~~~~~~~~~~~~~~~~l~~  258 (476)
                      +|+..|++++...|+++..+..++.
T Consensus       110 eAi~~~~~Al~~~p~~~~~~~~~~~  134 (144)
T PRK15359        110 LAREAFQTAIKMSYADASWSEIRQN  134 (144)
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHH
Confidence            4444444444444444444444333

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.68  E-value=2.2e-14  Score=119.69  Aligned_cols=126  Identities=17%  Similarity=0.251  Sum_probs=100.7

Q ss_pred             hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 011845          161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE-YKYST--ANLARK  237 (476)
Q Consensus       161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~--~~~A~~  237 (476)
                      .++.++++..+++++..+|++...|..+|.++...|++++|+..|++++...|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            566677888888888888888888888888888888888888888888888888888888888764 56666  478888


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845          238 LFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA  286 (476)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  286 (476)
                      .++++++.+|+++.+++.+|..+...|++++|+.+|+++++..|.+...
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            8888888888888888888888888888888888888888887766554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.66  E-value=1.2e-12  Score=137.28  Aligned_cols=374  Identities=14%  Similarity=0.014  Sum_probs=269.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-cCcCcHHHHHHHHHHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTV-ADKGHIAAWHGWAVLE   90 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~   90 (476)
                      ..+...+..+...|++.+|+..+..+-..  +.-.......+......|++..+...+..+-. ....++......+.++
T Consensus       342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~  419 (903)
T PRK04841        342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA  419 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence            44556677788899999998877765211  11223344556777788998887777765421 1123344556778888


Q ss_pred             HHhCCHHHHHHHHHHhhccCCC---------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch-----hHHHHHHH
Q 011845           91 LRQGNIKKARQLLAKGLKFCGG---------NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC-----ASWIAWSQ  156 (476)
Q Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~  156 (476)
                      ...|++++|...+.++....+.         ...+...++.++...|++++|...+++++...+...     .+...+|.
T Consensus       420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~  499 (903)
T PRK04841        420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE  499 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence            8999999999999888654221         123455678888899999999999999998654332     24567888


Q ss_pred             HHHHhccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHHHHHH
Q 011845          157 MEMQQENNLAARQLFERAVQASPKN------RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--------DPVLLQSL  222 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l  222 (476)
                      ++...|++++|...+++++......      ...+..++.++...|++++|...+++++.....        ....+..+
T Consensus       500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  579 (903)
T PRK04841        500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR  579 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            8999999999999999998753321      245677899999999999999999998875221        12345678


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH--H-HHH-HHH
Q 011845          223 ALLEYKYSTANLARKLFRRASEIDPR-----HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA--A-RCL-QAW  293 (476)
Q Consensus       223 a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~-~~~-~~l  293 (476)
                      |.++...|++++|...+.+++.....     ....+..++.++...|++++|...+.++..+.+.....  . ... ...
T Consensus       580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~  659 (903)
T PRK04841        580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR  659 (903)
T ss_pred             HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence            88999999999999999998775321     23456678999999999999999999997653322110  0 000 111


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhhh---------hhcchhhh
Q 011845          294 GVLEQRVGNLSAARRLFRSSLNINSQSY----ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT---------EVVDDASW  360 (476)
Q Consensus       294 ~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~  360 (476)
                      ...+...|+.+.|..++.......+...    ..+..++.++...|++++|...++.+.....         ......+.
T Consensus       660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~  739 (903)
T PRK04841        660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ  739 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            3445568999999999887665332222    2256789999999999999999999887432         23345677


Q ss_pred             hhhhcccchHHHHHHHHHhccccCCCC
Q 011845          361 VMGFMDIIDPALDRIKQLLNLEKSSYK  387 (476)
Q Consensus       361 ~~~~~g~~~~A~~~~~~al~~~p~~~~  387 (476)
                      ++...|+.++|...+.+++++......
T Consensus       740 a~~~~G~~~~A~~~L~~Al~la~~~g~  766 (903)
T PRK04841        740 LYWQQGRKSEAQRVLLEALKLANRTGF  766 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhCccch
Confidence            888999999999999999998765544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.66  E-value=1.3e-13  Score=135.86  Aligned_cols=225  Identities=11%  Similarity=0.006  Sum_probs=148.2

Q ss_pred             cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845            4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus         4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      ...+|.+..++..++..+...+++++|+.+++..++.. |+....++.+|.++.+.+++.++..+  .++...+.+.   
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~---   97 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL---   97 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc---
Confidence            35689999999999999999999999999999998887 99999999999999999997776665  4444433332   


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                                 ++ .+++.+-..+...+.+..+++.+|.||.++|+.++|...|+++++.+|+++.++.++|..|... +
T Consensus        98 -----------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         98 -----------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D  164 (906)
T ss_pred             -----------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h
Confidence                       22 2233333333334444455555555555555555555555555555555555555555555555 5


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH--------------------HHHHH
Q 011845          164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVL--------------------LQSLA  223 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------------~~~la  223 (476)
                      .++|+.++.+++..              +...+++..+..++.+.+..+|++...                    +.-+-
T Consensus       165 L~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~  230 (906)
T PRK14720        165 KEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY  230 (906)
T ss_pred             HHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence            55555555555543              333344555555555555555544332                    23333


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 011845          224 LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEW  261 (476)
Q Consensus       224 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (476)
                      ..|...+++++++.+++.+++.+|.+..+...++.+|.
T Consensus       231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            55666777788888888888888887777777777776

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.66  E-value=9e-15  Score=128.94  Aligned_cols=259  Identities=12%  Similarity=-0.003  Sum_probs=188.6

Q ss_pred             HHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHH
Q 011845           19 KVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKK   98 (476)
Q Consensus        19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~   98 (476)
                      +.++-.|+|..++..++ .....++........+.+++..+|+++..+.....   ..+....+...++..+...++.+.
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHH
Confidence            45666899999997777 33333233455677788899999998876655433   223344566677777766567777


Q ss_pred             HHHHHHHhhccCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845           99 ARQLLAKGLKFCG--GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ  176 (476)
Q Consensus        99 A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  176 (476)
                      ++..++..+....  .++.+....|.++...|++++|++.+.+.     .+.+.......++...++++.|.+.++.+.+
T Consensus        85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~  159 (290)
T PF04733_consen   85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ  159 (290)
T ss_dssp             HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            7777776664432  34556677778888889999998888654     5677777788899999999999999999888


Q ss_pred             cCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 011845          177 ASPKNRFAWHVWGIFEANMG--FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWI  254 (476)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  254 (476)
                      .+.+..-+....+.+....|  ++.+|.-+|++.....+.++.++..++.++..+|++++|...+++++..+|+++.++.
T Consensus       160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La  239 (290)
T PF04733_consen  160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA  239 (290)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence            87777655555555665555  5889999999988888888888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCh-hHHHHHHHHHHccCCCChhH
Q 011845          255 AWGWMEWKEGNL-DTARELYERALSIDSTTESA  286 (476)
Q Consensus       255 ~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~  286 (476)
                      +++.+....|+. +.+.+++.+....+|+++..
T Consensus       240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            999888888888 55667777777788888654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=2.4e-13  Score=110.98  Aligned_cols=200  Identities=12%  Similarity=0.037  Sum_probs=155.7

Q ss_pred             cCCHHHHHHHHHHhhccCC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHH
Q 011845           24 QSKVAEARAIYAKGSQATQ-----GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKK   98 (476)
Q Consensus        24 ~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~   98 (476)
                      ..+.++-++++..++...+     ++--.++.....+....|+.+-|..++++.....|.+.......|..+...|++++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence            3455666666666553221     22233444556666778888888888888887778888888888888888888888


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC
Q 011845           99 ARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQAS  178 (476)
Q Consensus        99 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  178 (476)
                      |+++|+..++.+|.+..++.....+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.
T Consensus       105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~  184 (289)
T KOG3060|consen  105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ  184 (289)
T ss_pred             HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011845          179 PKNRFAWHVWGIFEANMG---FIDKGKKLLKIGHAVNPRDPVLLQSLA  223 (476)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la  223 (476)
                      |.++..+..++.+++-.|   ++.-|.++|.++++++|.+...++.+.
T Consensus       185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~  232 (289)
T KOG3060|consen  185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY  232 (289)
T ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence            888888888888877766   466788888888888887766655543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.65  E-value=3.9e-14  Score=116.82  Aligned_cols=171  Identities=15%  Similarity=0.172  Sum_probs=84.1

Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Q 011845          101 QLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK  180 (476)
Q Consensus       101 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  180 (476)
                      ..+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|......|++..|+..++++....|+
T Consensus        54 ~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~  132 (257)
T COG5010          54 AALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT  132 (257)
T ss_pred             HHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence            3333333444444444 444444444554444444444444444444444444444455555555555555555555555


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 011845          181 NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWME  260 (476)
Q Consensus       181 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  260 (476)
                      +.++|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+.
T Consensus       133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~  212 (257)
T COG5010         133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV  212 (257)
T ss_pred             ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555554444444444445555555


Q ss_pred             HHcCChhHHHHH
Q 011845          261 WKEGNLDTAREL  272 (476)
Q Consensus       261 ~~~g~~~~A~~~  272 (476)
                      ...|++.+|..+
T Consensus       213 ~~~g~~~~A~~i  224 (257)
T COG5010         213 GLQGDFREAEDI  224 (257)
T ss_pred             hhcCChHHHHhh
Confidence            555555544443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.65  E-value=4.8e-14  Score=116.27  Aligned_cols=181  Identities=14%  Similarity=0.131  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845           62 IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT  141 (476)
Q Consensus        62 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  141 (476)
                      ...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+..++..+|......|++..|+..+.++.
T Consensus        49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~  127 (257)
T COG5010          49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA  127 (257)
T ss_pred             hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            334666666667778888888 8888889999999999999988888888888888888999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 011845          142 KCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQS  221 (476)
Q Consensus       142 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  221 (476)
                      ...|++..+|..+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+
T Consensus       128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N  207 (257)
T COG5010         128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN  207 (257)
T ss_pred             ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888888889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHh
Q 011845          222 LALLEYKYSTANLARKLFRRAS  243 (476)
Q Consensus       222 la~~~~~~~~~~~A~~~~~~~~  243 (476)
                      ++.+....|++.+|..+..+-+
T Consensus       208 LAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         208 LALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHhhcCChHHHHhhccccc
Confidence            9999999999998887765543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.65  E-value=3.5e-14  Score=118.45  Aligned_cols=123  Identities=14%  Similarity=0.188  Sum_probs=86.5

Q ss_pred             cCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH-HHhcc--HHHHHH
Q 011845           59 LGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE-AKANR--YEQARN  135 (476)
Q Consensus        59 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~-~~~g~--~~~A~~  135 (476)
                      .++.++++..+++++..+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            455667777777777777777777777777777777777777777777777777777777777653 45555  467777


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845          136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN  181 (476)
Q Consensus       136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  181 (476)
                      .++++++.+|+++.++..+|..+...|++++|+..++++++..|.+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            7777777777777777777777777777777777777777766654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.63  E-value=2.5e-14  Score=133.23  Aligned_cols=217  Identities=18%  Similarity=0.177  Sum_probs=110.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL   91 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   91 (476)
                      .....++..+...|-...|+.+|++.         ..|-....||...|+..+|..+..+-++ .|.++..|..+|.+..
T Consensus       399 q~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH  468 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence            33444555555555555555555543         3344445555555555555555555554 3334444545554444


Q ss_pred             HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHH
Q 011845           92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLF  171 (476)
Q Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  171 (476)
                      ...-|++|.++.+..      +..+...+|......+++.++..+++..++++|-....|+.+|.+..+.++++.|...|
T Consensus       469 d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF  542 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF  542 (777)
T ss_pred             ChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence            444444444443322      22233444444444555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845          172 ERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASE  244 (476)
Q Consensus       172 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  244 (476)
                      ..++..+|++..+|++++..|...++-.+|...++++++.+-++..+|.+.-.+....|.+++|++.+.+.+.
T Consensus       543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555555555555555555555555555443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.63  E-value=6.2e-12  Score=132.09  Aligned_cols=339  Identities=14%  Similarity=0.044  Sum_probs=247.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC---------cHHHHH
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG---------HIAAWH   84 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---------~~~~~~   84 (476)
                      ....+..+...|++..+..++..+-......++......+.++...|++++|...+..+....+.         ......
T Consensus       377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~  456 (903)
T PRK04841        377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA  456 (903)
T ss_pred             HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence            44456667778888887777766521111234556677788889999999999999987653221         123444


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhhccCCCcH-----HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc------hhHHHH
Q 011845           85 GWAVLELRQGNIKKARQLLAKGLKFCGGNE-----YIYQTLALLEAKANRYEQARNLFRQATKCNPKS------CASWIA  153 (476)
Q Consensus        85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~  153 (476)
                      .++.++...|++++|...+++++...+...     .+...+|.++...|++++|...+.+++......      ..++..
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~  536 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ  536 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            678888899999999999999987544322     355778889999999999999999998764321      235667


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHH
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPK--------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR-----DPVLLQ  220 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~  220 (476)
                      ++.++...|++++|...+++++.....        ....+..++.++...|++++|...+.+++.....     ....+.
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  616 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA  616 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence            899999999999999999998875221        2234567788899999999999999998775321     244566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHH----HHHHHHHHcCChhHHHHHHHHHHccCCCChh-HHHHHHH
Q 011845          221 SLALLEYKYSTANLARKLFRRASEIDPRH---QPVWI----AWGWMEWKEGNLDTARELYERALSIDSTTES-AARCLQA  292 (476)
Q Consensus       221 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~----~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~  292 (476)
                      .++.++...|+++.|...+.++....+..   .....    .....+...|+.+.|..++.......+.... ....+..
T Consensus       617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~  696 (903)
T PRK04841        617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN  696 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence            78899999999999999999987653321   11111    1224445689999999998876653322211 1223456


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845          293 WGVLEQRVGNLSAARRLFRSSLNINS------QSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT  352 (476)
Q Consensus       293 l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  352 (476)
                      ++.++...|++++|...+++++....      ....++..++.++...|+.++|...+.+++....
T Consensus       697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            79999999999999999999987631      2235788899999999999999999999987543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.61  E-value=2.4e-13  Score=126.83  Aligned_cols=217  Identities=17%  Similarity=0.211  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA  127 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  127 (476)
                      ....++..+...|-...|+.+|++.        ..|-....||...|+..+|..+..+-++ .|+++..|..+|.+....
T Consensus       400 ~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh
Confidence            3345566666666666666666553        3445555666666666666666666665 445555666666555555


Q ss_pred             ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI  207 (476)
Q Consensus       128 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  207 (476)
                      .-|++|.++.+..      +..+...+|......++++++.++++..++++|-....|+.+|.+..+.+++..|.+.|.+
T Consensus       471 s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r  544 (777)
T KOG1128|consen  471 SLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR  544 (777)
T ss_pred             HHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence            4444454444432      2224444555555556666666666666666666666666666666666666666666666


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845          208 GHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI  279 (476)
Q Consensus       208 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  279 (476)
                      ++...|++...|++++..|...++-.+|...++++++-+-.+..+|-+...+....|.+++|++.|.+.+.+
T Consensus       545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            666666666666666666666666666666666666666555566666666666666666666666665554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.59  E-value=1.1e-13  Score=122.12  Aligned_cols=257  Identities=14%  Similarity=0.027  Sum_probs=165.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845           54 VLENKLGNIGKARELFDASTVADK-GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ  132 (476)
Q Consensus        54 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  132 (476)
                      +-++-.|+|..++..++ ....++ ........+.+++..+|++...+.-+...   .+....+...++..+...++.+.
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence            44566788888887666 223333 23456667788888888877665544332   23344455666666655455666


Q ss_pred             HHHHHHHHHhcCC--CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845          133 ARNLFRQATKCNP--KSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       133 A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  210 (476)
                      ++..++..+....  .++......|.++...|++++|++.+.+.     .+.+.......++...++++.|.+.++.+.+
T Consensus        85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~  159 (290)
T PF04733_consen   85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ  159 (290)
T ss_dssp             HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6666655443321  23445556667777778888887777653     4566667777788888888888888888777


Q ss_pred             cCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHH
Q 011845          211 VNPRDPVLLQSLALLEYKYS--TANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAAR  288 (476)
Q Consensus       211 ~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  288 (476)
                      .+.+...+....+++....|  .+.+|..+|++..+..+.++..+..++.++..+|++++|...+++++..+|.++.   
T Consensus       160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d---  236 (290)
T PF04733_consen  160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD---  236 (290)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH---
T ss_pred             cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH---
Confidence            77665555555555555555  4777888888877777777777778888888888888888888888877777744   


Q ss_pred             HHHHHHHHHHHhCCH-HHHHHHHHHHHhhCCCcHH
Q 011845          289 CLQAWGVLEQRVGNL-SAARRLFRSSLNINSQSYI  322 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~  322 (476)
                      ++.+++.+....|+. +.+.+++.+....+|+++.
T Consensus       237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence            466777777777777 5566677777777777664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.59  E-value=6.3e-13  Score=130.30  Aligned_cols=138  Identities=12%  Similarity=0.005  Sum_probs=78.2

Q ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 011845          110 CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWG  189 (476)
Q Consensus       110 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  189 (476)
                      .|.++.++..||.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++..+|++...++.+|
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 011845          190 IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP  247 (476)
Q Consensus       190 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  247 (476)
                      .++...|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            5555555555555555555555555555555555555555555555555555555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.59  E-value=3e-13  Score=132.53  Aligned_cols=153  Identities=12%  Similarity=0.053  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845          132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV  211 (476)
Q Consensus       132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  211 (476)
                      +++.-........|++++++..+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            33344444455678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845          212 NPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE  284 (476)
Q Consensus       212 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  284 (476)
                      .|+++..++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999865543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.56  E-value=5.6e-14  Score=122.32  Aligned_cols=287  Identities=12%  Similarity=0.061  Sum_probs=163.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHhhcc------CCCcHHHHHHHHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHI----AAWHGWAVLELRQGNIKKARQLLAKGLKF------CGGNEYIYQTLAL  122 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~  122 (476)
                      |.-++++|++...+.+|+.+++...++.    .+|..+|.+|...++|++|+++-..-+.+      .-......-++|.
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            3444555555555555555555444432    23334555555555555555543222111      1111223344555


Q ss_pred             HHHHhccHHHHHHHHHHHHhcCC------CchhHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHH
Q 011845          123 LEAKANRYEQARNLFRQATKCNP------KSCASWIAWSQMEMQQEN--------------------NLAARQLFERAVQ  176 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a~~  176 (476)
                      ++.-.|.|++|+.+..+-+....      ....+++++|.+|...|+                    ++.|.++|..-++
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555554443321      113355555555554442                    2334444443333


Q ss_pred             cCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845          177 ASPK------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR------DPVLLQSLALLEYKYSTANLARKLFRRASE  244 (476)
Q Consensus       177 ~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  244 (476)
                      +...      ...++-++|..|+-+|+|+.|+..-+.-+.+...      ...++.++|.++.-.|+++.|+++|+..+.
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence            3211      1244566777777788888888776665554322      134677888888888888888888887654


Q ss_pred             c----CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845          245 I----DP--RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES---AARCLQAWGVLEQRVGNLSAARRLFRSSLN  315 (476)
Q Consensus       245 ~----~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  315 (476)
                      +    ..  ......+.+|..|.-..++++|+.++.+-+.+...-.+   -.+.+..+|..+...|..++|+.+.++.++
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3    22  23456677888888888888888888877665322111   134566778888888888888888877765


Q ss_pred             hC-----CC-cHHHHHHHHHHHHHcCChHH
Q 011845          316 IN-----SQ-SYITWMTWAQLEEDQGNSVR  339 (476)
Q Consensus       316 ~~-----p~-~~~~~~~l~~~~~~~g~~~~  339 (476)
                      ..     +. ...+..++..+....|..+.
T Consensus       344 ~s~ev~D~sgelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  344 SSLEVNDTSGELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence            42     22 22456677777777776443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=9.5e-13  Score=110.03  Aligned_cols=286  Identities=13%  Similarity=0.002  Sum_probs=225.6

Q ss_pred             HHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHH
Q 011845           56 ENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARN  135 (476)
Q Consensus        56 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~  135 (476)
                      +.+..+|.+|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-...|......+..+..+++.+.+..|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            36778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011845          136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD  215 (476)
Q Consensus       136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  215 (476)
                      +...+.....-.......-+.+.+..+++..+..+.++.-  ..++.....+.|.+.++.|+++.|++-|+.+++...-.
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq  177 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ  177 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence            9887755422223344455666777888888877766532  12456788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCC-------------------------HHHHHHHHHHHHHcCCh
Q 011845          216 PVLLQSLALLEYKYSTANLARKLFRRASEI----DPRH-------------------------QPVWIAWGWMEWKEGNL  266 (476)
Q Consensus       216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~-------------------------~~~~~~l~~~~~~~g~~  266 (476)
                      +.+-++++.++++.+++..|+++..+.++.    .|+.                         ..+++..+-++++.|++
T Consensus       178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~  257 (459)
T KOG4340|consen  178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY  257 (459)
T ss_pred             chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence            999999999999999999999988777654    3321                         13455567788899999


Q ss_pred             hHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 011845          267 DTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRN  345 (476)
Q Consensus       267 ~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  345 (476)
                      +.|.+.+..+--......+ +..+.+++.. -..+++.+...-++-.+.++|-..+++.++..++.+..-++-|..++.
T Consensus       258 eAA~eaLtDmPPRaE~elD-PvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  258 EAAQEALTDMPPRAEEELD-PVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA  334 (459)
T ss_pred             HHHHHHhhcCCCcccccCC-chhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence            9998776544322111111 2234454433 335678888888888899999888999999999998888888876643

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.56  E-value=9.6e-14  Score=120.90  Aligned_cols=270  Identities=14%  Similarity=0.048  Sum_probs=203.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhhccCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCchhHHHHH
Q 011845           85 GWAVLELRQGNIKKARQLLAKGLKFCGGNE----YIYQTLALLEAKANRYEQARNLFRQATKC------NPKSCASWIAW  154 (476)
Q Consensus        85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l  154 (476)
                      .-|.-+.+.|+....+.+|+.+++...++.    .+|..+|..|..+++|++|+++-..-+.+      .-....+--++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            346677899999999999999999987664    46788999999999999999875543322      12234456678


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 011845          155 SQMEMQQENNLAARQLFERAVQASP------KNRFAWHVWGIFEANMGF--------------------IDKGKKLLKIG  208 (476)
Q Consensus       155 a~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~  208 (476)
                      |..+...|.|++|+.+..+-+....      ....+++++|.+|...|+                    ++.|.++|..-
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN  181 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN  181 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888776532      235789999999987764                    23344444443


Q ss_pred             HhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845          209 HAVNPRD------PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERA  276 (476)
Q Consensus       209 ~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (476)
                      +++....      ..++-++|..|+-.|+|+.|+..-+.-+.+....      -.++.++|.++.-.|+++.|+++|+..
T Consensus       182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            3332211      2356778888999999999999888776664332      257889999999999999999999987


Q ss_pred             Hcc----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845          277 LSI----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS------QSYITWMTWAQLEEDQGNSVRAEEIRNL  346 (476)
Q Consensus       277 ~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~  346 (476)
                      +.+    ...... ....+.+|..|.-..++++|+.++++-+.+..      ....+.+.++..+...|..++|....+.
T Consensus       262 l~LAielg~r~vE-AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~  340 (639)
T KOG1130|consen  262 LNLAIELGNRTVE-AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL  340 (639)
T ss_pred             HHHHHHhcchhHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            654    222222 44567889999999999999999998877632      2345788999999999999999998888


Q ss_pred             HHhhhhhhc
Q 011845          347 YFQQRTEVV  355 (476)
Q Consensus       347 ~~~~~~~~~  355 (476)
                      .++...++.
T Consensus       341 hl~~s~ev~  349 (639)
T KOG1130|consen  341 HLRSSLEVN  349 (639)
T ss_pred             HHHHHHHhC
Confidence            887555444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.55  E-value=3.4e-13  Score=106.56  Aligned_cols=116  Identities=14%  Similarity=0.070  Sum_probs=61.9

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 011845          170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH  249 (476)
Q Consensus       170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  249 (476)
                      .|++++..+|++......++..+...|++++|...+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845          250 QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES  285 (476)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  285 (476)
                      +..++.+|.++...|++++|+..|+++++.+|++..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            555555555555555555555555555555555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.54  E-value=3.8e-13  Score=106.26  Aligned_cols=115  Identities=15%  Similarity=0.112  Sum_probs=62.6

Q ss_pred             HHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 011845           68 LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS  147 (476)
Q Consensus        68 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  147 (476)
                      .|++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845          148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNR  182 (476)
Q Consensus       148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  182 (476)
                      +..++.+|.++...|++++|+..|+++++.+|++.
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            55555555555555555555555555555555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.50  E-value=1.6e-11  Score=110.08  Aligned_cols=153  Identities=16%  Similarity=0.046  Sum_probs=114.7

Q ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845          111 GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI  190 (476)
Q Consensus       111 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  190 (476)
                      |....+++..+..++..|++++|+..++..+...|+++..+...+.++...|+..+|.+.+++++..+|..+..+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            56667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHH
Q 011845          191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAR  270 (476)
Q Consensus       191 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  270 (476)
                      .+.+.|++.+|+..++..+..+|+++..|..++..|..+|+..++..                 ..+..+...|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence            77777777777777777777777777777777777777776554443                 3455556677777777


Q ss_pred             HHHHHHHccC
Q 011845          271 ELYERALSID  280 (476)
Q Consensus       271 ~~~~~a~~~~  280 (476)
                      ..+..+.+..
T Consensus       446 ~~l~~A~~~~  455 (484)
T COG4783         446 IFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHhc
Confidence            7777777664

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.48  E-value=2.6e-11  Score=108.83  Aligned_cols=153  Identities=18%  Similarity=0.099  Sum_probs=130.4

Q ss_pred             CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011845          145 PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLAL  224 (476)
Q Consensus       145 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  224 (476)
                      |....+++..+..++..|++++|...+...+...|+|+..+...+.++...++.++|.+.+++++...|..+....++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            66777888888888888999999999988888889888888888888999999999999999999888888888888999


Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHH
Q 011845          225 LEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLS  304 (476)
Q Consensus       225 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~  304 (476)
                      .+.+.|++.+|+..++..+..+|+++..|..++..|...|+..+|..                    ..+..+...|+++
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~--------------------A~AE~~~~~G~~~  442 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL--------------------ARAEGYALAGRLE  442 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH--------------------HHHHHHHhCCCHH
Confidence            99999999999999988888888888899999988888888766643                    2366677788888


Q ss_pred             HHHHHHHHHHhhC
Q 011845          305 AARRLFRSSLNIN  317 (476)
Q Consensus       305 ~A~~~~~~al~~~  317 (476)
                      +|+..+..+.+..
T Consensus       443 ~A~~~l~~A~~~~  455 (484)
T COG4783         443 QAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHHHHhc
Confidence            8888888887765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.44  E-value=2.6e-12  Score=108.22  Aligned_cols=120  Identities=13%  Similarity=0.097  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845           80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM  159 (476)
Q Consensus        80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  159 (476)
                      .+-+-.-|.-+++.++|.+|+..|.++++++|.++..|.+.+.+|.++|.++.|++-++.++.++|....+|..+|.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            34566778888888999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             HhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 011845          160 QQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFID  199 (476)
Q Consensus       160 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  199 (476)
                      .+|++++|++.|+++++++|++...+..|..+-...++..
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999988888888877777666655

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.42  E-value=1.5e-10  Score=115.34  Aligned_cols=238  Identities=21%  Similarity=0.328  Sum_probs=162.7

Q ss_pred             HHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhcc-CCCc----HHHHHHHHHHHHHhccHHHHHHHHH
Q 011845           64 KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKF-CGGN----EYIYQTLALLEAKANRYEQARNLFR  138 (476)
Q Consensus        64 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~  138 (476)
                      +..+-|++.+..+|+....|..+...+...++.++|.++.++++.. ++..    ..+|..+-.+...-|.-+.-.+.|+
T Consensus      1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred             cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence            3455666667777777777777777777777777777777777753 2221    2345555555555566666777777


Q ss_pred             HHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH
Q 011845          139 QATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--DP  216 (476)
Q Consensus       139 ~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~  216 (476)
                      +|.+.. +...++..|..+|...+++++|.++|+..++...+...+|..++..+.++.+-+.|..++.++++.-|.  +.
T Consensus      1522 RAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1522 RACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred             HHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence            776653 234567777777777777777777777777777767777777777777777777777777777777776  56


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q 011845          217 VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVL  296 (476)
Q Consensus       217 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~  296 (476)
                      ......|++.++.|+.+.+..+|+..+..+|...+.|..+...-.+.|+.+.+..+|++++.+.-....+..++..+-..
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence            67777777777777777777777777777777777777777777777777777777777777654433333333333333


Q ss_pred             HHHhCC
Q 011845          297 EQRVGN  302 (476)
Q Consensus       297 ~~~~g~  302 (476)
                      ....|+
T Consensus      1681 Ek~~Gd 1686 (1710)
T KOG1070|consen 1681 EKSHGD 1686 (1710)
T ss_pred             HHhcCc
Confidence            333344

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.42  E-value=3.5e-12  Score=107.45  Aligned_cols=120  Identities=13%  Similarity=0.061  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA  125 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  125 (476)
                      ++-+-.-|.-+++.++|.+|+..|.++++++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..+|.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            34455668888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHH
Q 011845          126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL  165 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~  165 (476)
                      .+|++.+|++.|++++.++|++...+..|..+-...++..
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999888888877777766655

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.42  E-value=1.2e-11  Score=95.43  Aligned_cols=102  Identities=10%  Similarity=-0.097  Sum_probs=52.1

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845          179 PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGW  258 (476)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  258 (476)
                      ++..+..+.+|..+...|++++|...|+-+...+|.+...|++||.++...|++++|+..|.+++.++|+++..++++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            33444444555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCChhHHHHHHHHHHccC
Q 011845          259 MEWKEGNLDTARELYERALSID  280 (476)
Q Consensus       259 ~~~~~g~~~~A~~~~~~a~~~~  280 (476)
                      ++...|+.+.|.+.|+.++...
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            5555555555555555554443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.42  E-value=1.3e-11  Score=95.32  Aligned_cols=102  Identities=10%  Similarity=0.003  Sum_probs=51.6

Q ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845           77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ  156 (476)
Q Consensus        77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  156 (476)
                      ++..+..+.+|..++..|++++|...|+-+...+|.+...|+.||.++..+|++.+|+..|.+++.++|+++..+..+|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            33444444555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhccHHHHHHHHHHHHHcC
Q 011845          157 MEMQQENNLAARQLFERAVQAS  178 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~~~  178 (476)
                      ++...|+.+.|.+.|+.++...
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            5555555555555555544443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.39  E-value=3.7e-10  Score=112.73  Aligned_cols=216  Identities=19%  Similarity=0.331  Sum_probs=194.2

Q ss_pred             HHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-cCcCc----HHHHHHHHHHHHHhCCHHHHHHHH
Q 011845           29 EARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTV-ADKGH----IAAWHGWAVLELRQGNIKKARQLL  103 (476)
Q Consensus        29 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~----~~~~~~la~~~~~~~~~~~A~~~~  103 (476)
                      +..+-|++.+... |++...|..+...+.+.++.++|++++++++. +++..    ...|..+-.+...-|.-+...+.|
T Consensus      1442 esaeDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             cCHHHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            3456677777777 89999999999999999999999999999985 44433    357777777777888888999999


Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC--c
Q 011845          104 AKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK--N  181 (476)
Q Consensus       104 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~  181 (476)
                      +++.+.+ +...++..|..+|...+.+++|.++|+.+++.......+|..++..++++++-+.|..++.+|++.-|.  +
T Consensus      1521 eRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred             HHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence            9999876 345688999999999999999999999999999988999999999999999999999999999999998  7


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 011845          182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID  246 (476)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  246 (476)
                      .......+.+.++.|+.+.+..+|+..+...|...++|..+...-.+.|+.+.++.+|++++.+.
T Consensus      1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            78888999999999999999999999999999999999999999999999999999999998764

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.33  E-value=9.2e-08  Score=87.19  Aligned_cols=375  Identities=13%  Similarity=0.145  Sum_probs=226.5

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA   82 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~   82 (476)
                      -++.+|.|..+|+.+.+-+-.+ -+++....|++.+... |..+.+|.......+...+|+....+|.+++..- -+.+.
T Consensus        12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDL   88 (656)
T KOG1914|consen   12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDL   88 (656)
T ss_pred             HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhH
Confidence            4678999999999998887766 9999999999999998 9999999999999999999999999999997432 22344


Q ss_pred             HHHHHH-HHHHhCCHHHHHHHHHHh----h---ccCCCcHHHHHHHHHHHH---------HhccHHHHHHHHHHHHhcCC
Q 011845           83 WHGWAV-LELRQGNIKKARQLLAKG----L---KFCGGNEYIYQTLALLEA---------KANRYEQARNLFRQATKCNP  145 (476)
Q Consensus        83 ~~~la~-~~~~~~~~~~A~~~~~~~----~---~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~~~~~p  145 (476)
                      |..... +-...|+...+....-++    +   -.++.+..+|...+..+.         ...+.+.....|++++..--
T Consensus        89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm  168 (656)
T KOG1914|consen   89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM  168 (656)
T ss_pred             HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence            432211 111222222211111111    1   122233333333222211         11233333333333333211


Q ss_pred             Cc------------------------------------------------------------------hhHHHHHHHHHH
Q 011845          146 KS------------------------------------------------------------------CASWIAWSQMEM  159 (476)
Q Consensus       146 ~~------------------------------------------------------------------~~~~~~la~~~~  159 (476)
                      .+                                                                  .+.|.++.....
T Consensus       169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk  248 (656)
T KOG1914|consen  169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK  248 (656)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence            11                                                                  112322222221


Q ss_pred             Hhc------cH--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCC-CH
Q 011845          160 QQE------NN--LAARQLFERAVQASPKNRFAWHVWGIFEANMGF--------------IDKGKKLLKIGHAVNPR-DP  216 (476)
Q Consensus       160 ~~~------~~--~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~-~~  216 (476)
                      ..+      ..  ..-.-.+++++..-+-.+++|+..+..+...++              .+++..+|++++...-. +.
T Consensus       249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~  328 (656)
T KOG1914|consen  249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK  328 (656)
T ss_pred             cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            111      00  122234566666666677888887777766666              78888999988765432 33


Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845          217 VLLQSLALLEYKYS---TANLARKLFRRASEIDPRHQ-PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA  292 (476)
Q Consensus       217 ~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  292 (476)
                      ..++.++..-...-   +.+.....+++++.+...++ .+|..+...-.+..-...|..+|.++-+.....   ..++..
T Consensus       329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~---hhVfVa  405 (656)
T KOG1914|consen  329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR---HHVFVA  405 (656)
T ss_pred             HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc---chhhHH
Confidence            44455554433332   36667777777776644333 355555555666666788888888887654333   122222


Q ss_pred             HH-HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--h----hhhcchhhhhhhhc
Q 011845          293 WG-VLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ--R----TEVVDDASWVMGFM  365 (476)
Q Consensus       293 l~-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~~~~~~~~~  365 (476)
                      -| .-|...++..-|..+|+-.+...++++..-..+...+...++-..|..+|++++..  .    .+++...-..-...
T Consensus       406 ~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v  485 (656)
T KOG1914|consen  406 AALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV  485 (656)
T ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence            22 23456788888888888888888888888888888888888888888888888775  1    13444444445566


Q ss_pred             ccchHHHHHHHHHhcccc
Q 011845          366 DIIDPALDRIKQLLNLEK  383 (476)
Q Consensus       366 g~~~~A~~~~~~al~~~p  383 (476)
                      |++...++.=++-....|
T Consensus       486 GdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  486 GDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             ccHHHHHHHHHHHHHhcc
Confidence            777777776666555555

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.33  E-value=3.6e-10  Score=95.28  Aligned_cols=182  Identities=15%  Similarity=-0.010  Sum_probs=79.8

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH---HHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN---PYIWQCWAVLENKLGNIGKARELFDASTVADKGHI---AAWH   84 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~   84 (476)
                      +..++..|..++..|+|.+|+..|++++... |.+   +.+.+.+|.+++..|+++.|+..+++.+...|+++   .+++
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            3445555555555555555555555555444 222   34455555555555555555555555555555442   3444


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH
Q 011845           85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN  164 (476)
Q Consensus        85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~  164 (476)
                      .+|.+++....-.     +                  ......+...+|+..|+..+...|++..+-.            
T Consensus        84 ~~g~~~~~~~~~~-----~------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~------------  128 (203)
T PF13525_consen   84 MLGLSYYKQIPGI-----L------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEE------------  128 (203)
T ss_dssp             HHHHHHHHHHHHH-----H-------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHH------------
T ss_pred             HHHHHHHHhCccc-----h------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHH------------
Confidence            4444443331000     0                  1112233445667777777777776543211            


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHH
Q 011845          165 LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP---VLLQSLALLEYKYSTAN  233 (476)
Q Consensus       165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~  233 (476)
                        |...+..+-..   -..--+.+|..|.+.|.+..|+..++.+++..|+.+   .++..++..+...|..+
T Consensus       129 --A~~~l~~l~~~---la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  129 --AKKRLAELRNR---LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             --HHHHHHHHHHH---HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             --HHHHHHHHHHH---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence              11000000000   001123345555555666666666666665555543   24555555555655555

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.31  E-value=6.2e-11  Score=108.81  Aligned_cols=101  Identities=14%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ  132 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  132 (476)
                      |..++..|++++|+.+|.+++..+|.+..+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++...|++++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHhcCCCchhHHHH
Q 011845          133 ARNLFRQATKCNPKSCASWIA  153 (476)
Q Consensus       133 A~~~~~~~~~~~p~~~~~~~~  153 (476)
                      |+..|++++.++|++..+...
T Consensus        89 A~~~~~~al~l~P~~~~~~~~  109 (356)
T PLN03088         89 AKAALEKGASLAPGDSRFTKL  109 (356)
T ss_pred             HHHHHHHHHHhCCCCHHHHHH
Confidence            444444444444444443333

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.31  E-value=1.1e-09  Score=94.51  Aligned_cols=182  Identities=10%  Similarity=-0.007  Sum_probs=103.4

Q ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---HHHHH
Q 011845          113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS---WIAWSQMEMQQENNLAARQLFERAVQASPKN---RFAWH  186 (476)
Q Consensus       113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~  186 (476)
                      ++..++..|..+...|++++|+..|++++...|..+.+   .+.+|.++.+.+++++|+..+++.++..|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            45556667777777777777777777777777766443   3667777777777777777777777776655   34556


Q ss_pred             HHHHHHHHcCC------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845          187 VWGIFEANMGF------------------IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR  248 (476)
Q Consensus       187 ~l~~~~~~~~~------------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  248 (476)
                      .+|.++...+.                  ..+|+..|++.++..|++..+-              +|...+..+...   
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l~~~---  173 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFLKDR---  173 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHHHHH---
Confidence            66655433321                  1234445555555555442211              111100000000   


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011845          249 HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFR  311 (476)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  311 (476)
                      -..--+.+|..|.+.|.|..|+.-++.+++..|+.+...+.+..++..|..+|..++|..+..
T Consensus       174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            001112456666666666666666666666666666666666666666666666666665554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.30  E-value=4.5e-10  Score=94.72  Aligned_cols=168  Identities=15%  Similarity=0.099  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---HHHHHH
Q 011845          114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKS---CASWIAWSQMEMQQENNLAARQLFERAVQASPKN---RFAWHV  187 (476)
Q Consensus       114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~  187 (476)
                      +..++..|..+...|++.+|+..|++++...|..   +.+.+.+|.++...|++++|+..+++.++..|++   +.+++.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            4455666666666666666666666666665544   3355666666666666666666666666666654   244555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH---------------
Q 011845          188 WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV---------------  252 (476)
Q Consensus       188 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------  252 (476)
                      +|.++.....-.         +              ......+...+|+..|+..+...|++..+               
T Consensus        85 ~g~~~~~~~~~~---------~--------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la  141 (203)
T PF13525_consen   85 LGLSYYKQIPGI---------L--------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA  141 (203)
T ss_dssp             HHHHHHHHHHHH---------H---------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCccc---------h--------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence            555444331100         0              00111122345555555555555554311               


Q ss_pred             --HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHH
Q 011845          253 --WIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLS  304 (476)
Q Consensus       253 --~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~  304 (476)
                        -+.+|..|.+.|.+..|+..++.+++..|+.......+..++..+.++|..+
T Consensus       142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence              1224445555555555555555555555555554444555555555555544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.30  E-value=7.2e-11  Score=108.35  Aligned_cols=113  Identities=17%  Similarity=0.140  Sum_probs=106.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ   93 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   93 (476)
                      +...|..++..|+|++|+..|++++... |.++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++...
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            5678999999999999999999999998 899999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 011845           94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA  127 (476)
Q Consensus        94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  127 (476)
                      |++++|+..|++++.++|++..+...++.+....
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999888887776555

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.30  E-value=1.4e-09  Score=93.78  Aligned_cols=182  Identities=10%  Similarity=-0.051  Sum_probs=122.1

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH---HHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHH
Q 011845           44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA---WHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIY  117 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~  117 (476)
                      .++..++..|..+...|++++|+..|++++...|..+.+   .+.+|.++++.+++++|+..+++.++..|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            456677788888888888888888888888888877544   4778888888888888888888888887765   4567


Q ss_pred             HHHHHHHHHhc------------------cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Q 011845          118 QTLALLEAKAN------------------RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP  179 (476)
Q Consensus       118 ~~la~~~~~~g------------------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  179 (476)
                      +.+|.++...+                  ...+|+..|++.++..|++.-+              .+|...+..+-..  
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~~--  173 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKDR--  173 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHHH--
Confidence            77776653332                  1346777777888877766321              1111111110000  


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845          180 KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD---PVLLQSLALLEYKYSTANLARKLFRRA  242 (476)
Q Consensus       180 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~  242 (476)
                       -..--+..|..|.+.|.+..|+.-++.+++..|+.   .+++..++..|...|..++|..+....
T Consensus       174 -la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        174 -LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             -HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence             01112356677777777877888888877777765   456777777788888877777665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=5.2e-09  Score=99.46  Aligned_cols=225  Identities=14%  Similarity=0.189  Sum_probs=140.3

Q ss_pred             HHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH--------h---hcCcCcHHHHHHHHHH
Q 011845           21 LSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDAS--------T---VADKGHIAAWHGWAVL   89 (476)
Q Consensus        21 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~--------~---~~~p~~~~~~~~la~~   89 (476)
                      |...|+.+.|.+..+-+      .+..+|-++|.+..+..+.+-|.-++-.+        +   ..+|++  .-...|.+
T Consensus       738 yvtiG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e--~eakvAvL  809 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE--DEAKVAVL  809 (1416)
T ss_pred             EEEeccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--hhhHHHHH
Confidence            44568888887766654      34467888888888777776665554432        1   123332  22345566


Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHH
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQ  169 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~  169 (476)
                      ....|..++|..+|.+.-.        +-.+-.+|...|.|++|.++.+.--+++  -...|++.+..+...++.+.|++
T Consensus       810 AieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~Ale  879 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALE  879 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHH
Confidence            6778888888888887754        3356677788888888877765432222  23467788888888888888888


Q ss_pred             HHHHH----------HHcCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 011845          170 LFERA----------VQASPK----------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY  229 (476)
Q Consensus       170 ~~~~a----------~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  229 (476)
                      +|+++          +..+|.          ++..|...|..+...|+.+.|+.+|..+-.        |+.+..+.+-+
T Consensus       880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~q  951 (1416)
T KOG3617|consen  880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQ  951 (1416)
T ss_pred             HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeec
Confidence            88764          222332          345677778888888888888888876532        34444444555


Q ss_pred             CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845          230 STANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERA  276 (476)
Q Consensus       230 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (476)
                      |+.++|-.+-++     ..+..+.+.+|..|...|++.+|+..|.++
T Consensus       952 Gk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  952 GKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             cCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            555555444332     233344555555555555555555555544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.26  E-value=1.8e-10  Score=88.76  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHH
Q 011845          217 VLLQSLALLEYKYSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW  293 (476)
Q Consensus       217 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l  293 (476)
                      ..++.+|..+...|++++|+..|.+++...|++   +.+++.+|.++...|++++|+.+|+.++...|+++....++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            445566666666666666666666666665554   34566666666666666666666666666666654333445566


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 011845          294 GVLEQRVGNLSAARRLFRSSLNINSQSYIT  323 (476)
Q Consensus       294 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  323 (476)
                      |.++...|++++|..++++++...|++..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            666666666666666666666666665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.25  E-value=7.8e-09  Score=89.31  Aligned_cols=234  Identities=9%  Similarity=0.066  Sum_probs=156.1

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CcC--cHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN---PYIWQCWAVLENKLGNIGKARELFDASTVA----DKG--HIA   81 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~--~~~   81 (476)
                      +.-.+..|.-++...++++|+..+.+.+..- .+.   ...+-.+..+...+|.+++++..--..+..    +..  ..+
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l-~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKL-SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHHHHHHHHHHHH-HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677788888899999999988887654 221   223344556777888888776654433321    111  136


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch------hH
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGN-----EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC------AS  150 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~  150 (476)
                      ++.+++..+.+..++.+++.+-+-.+..-...     ..+...++..+..++.++++++.|+.+++...++.      .+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            67788888888888888888877776653222     35667788888888888888888888887754332      36


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHcCCC----c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CC
Q 011845          151 WIAWSQMEMQQENNLAARQLFERAVQASPK----N------RFAWHVWGIFEANMGFIDKGKKLLKIGHAVN------PR  214 (476)
Q Consensus       151 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~  214 (476)
                      +..+|.++....++++|.-+..++.++...    +      ..+.+.++..+..+|+...|.++.+++.++.      +-
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            778888888888888888888887765321    1      2345566677777777777777777765542      11


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 011845          215 DPVLLQSLALLEYKYSTANLARKLFRRASEI  245 (476)
Q Consensus       215 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  245 (476)
                      .......+|.+|...|+.+.|..-|+++...
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            2334555666777777766666666666543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.25  E-value=1.6e-10  Score=94.94  Aligned_cols=122  Identities=19%  Similarity=0.253  Sum_probs=100.7

Q ss_pred             CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 011845          248 RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTW  327 (476)
Q Consensus       248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  327 (476)
                      .....++.+|..+...|++++|+.+|+++++..|+.......+..+|.++...|++++|+.++++++...|++...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            45567888999999999999999999999888776554445788889999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhccccCCC
Q 011845          328 AQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSY  386 (476)
Q Consensus       328 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  386 (476)
                      +.++...|+...+...++.+..                 .+++|++++++++..+|++.
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~-----------------~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEA-----------------LFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHH-----------------HHHHHHHHHHHHHhhCchhH
Confidence            9999999887776655444432                 46788889999999988863

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.24  E-value=7.7e-09  Score=89.36  Aligned_cols=306  Identities=11%  Similarity=0.019  Sum_probs=222.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH---HHHHHHHHHHHHhCCHHHHHHHHHHhhc----cCCC--cHHHHH
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI---AAWHGWAVLELRQGNIKKARQLLAKGLK----FCGG--NEYIYQ  118 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~p~--~~~~~~  118 (476)
                      -....|.-++...++++|+..+.+.+..-.+..   ..+-.+..+....|.+++++..--..+.    ....  .-+++.
T Consensus         8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l   87 (518)
T KOG1941|consen    8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL   87 (518)
T ss_pred             HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556777788899999999999886543322   3344566778888888887765433332    2211  235788


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCCCch-----hHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc------HHHHHH
Q 011845          119 TLALLEAKANRYEQARNLFRQATKCNPKSC-----ASWIAWSQMEMQQENNLAARQLFERAVQASPKN------RFAWHV  187 (476)
Q Consensus       119 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~  187 (476)
                      +++..+.+..++.+++.+-+..+......+     .+...++..+...+.++++++.|+.++....++      ..++..
T Consensus        88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~  167 (518)
T KOG1941|consen   88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS  167 (518)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence            999999999999999999888887643332     467779999999999999999999999864432      367889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCHH
Q 011845          188 WGIFEANMGFIDKGKKLLKIGHAVNPR----D------PVLLQSLALLEYKYSTANLARKLFRRASEID------PRHQP  251 (476)
Q Consensus       188 l~~~~~~~~~~~~A~~~~~~~~~~~~~----~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~  251 (476)
                      ++.++....++++|.-+..++.++...    +      ..+++.++..+...|..-.|.++.+++.++.      +-...
T Consensus       168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar  247 (518)
T KOG1941|consen  168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR  247 (518)
T ss_pred             HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence            999999999999999999988875432    2      2367888999999999999999999987753      22334


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh---HHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHhhCCCc---
Q 011845          252 VWIAWGWMEWKEGNLDTARELYERALSIDSTTES---AARCLQAWGVLEQRVGNLSA-----ARRLFRSSLNINSQS---  320 (476)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~-----A~~~~~~al~~~p~~---  320 (476)
                      ....+|.+|...|+.+.|..-|+++......-.+   ...++...+.++....-..+     |+++-++++++...-   
T Consensus       248 c~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K  327 (518)
T KOG1941|consen  248 CLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAK  327 (518)
T ss_pred             HHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhh
Confidence            5667999999999999999999999876332211   13344555666655544444     888888887764322   


Q ss_pred             ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh
Q 011845          321 ---YITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE  353 (476)
Q Consensus       321 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  353 (476)
                         ...+..++.+|...|..++-...+.++-+...+
T Consensus       328 ~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e  363 (518)
T KOG1941|consen  328 LSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEE  363 (518)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence               246788999999998887776666665554443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.23  E-value=1.6e-07  Score=82.42  Aligned_cols=224  Identities=23%  Similarity=0.285  Sum_probs=121.2

Q ss_pred             cCCHHHHHHHHHHHhhcCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHhccHHHHH
Q 011845           59 LGNIGKARELFDASTVADKG--HIAAWHGWAVLELRQGNIKKARQLLAKGLK--FCGGNEYIYQTLALLEAKANRYEQAR  134 (476)
Q Consensus        59 ~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~  134 (476)
                      .+.+..+...+...+...+.  ........+..+...+.+..+...+.....  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            35555556666665555544  245555666666666666666666666665  45555566666666666666666666


Q ss_pred             HHHHHHHhcCCCchhHHHHHHH-HHHHhccHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845          135 NLFRQATKCNPKSCASWIAWSQ-MEMQQENNLAARQLFERAVQASP---KNRFAWHVWGIFEANMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       135 ~~~~~~~~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  210 (476)
                      ..+..++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.++..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            6666666655554333444444 55566666666666666655444   2233333444444455555555555555555


Q ss_pred             cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845          211 VNPR-DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       211 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                      ..+. ....+..++..+...+++..|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            5555 34555555555555555555555555555555543344444444444444445555555555444443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=6.1e-08  Score=80.57  Aligned_cols=256  Identities=11%  Similarity=-0.027  Sum_probs=182.7

Q ss_pred             HHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHH
Q 011845           19 KVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKK   98 (476)
Q Consensus        19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~   98 (476)
                      +-++-.|+|..++..-++....  +........+.+.|..+|.+...+......-   .....+...++.....-++.++
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence            4555679999988877776433  3667777788888888888866554443322   2233455566666666666666


Q ss_pred             HHHHHHHhhccC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845           99 ARQLLAKGLKFC--GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ  176 (476)
Q Consensus        99 A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  176 (476)
                      -+.-+.+.+...  ..+......-+.++...|++++|+......     .+.++...-..++.+..+.+-|...++++.+
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            555554444332  223345566677888899999998887762     3456666667888888999999999999888


Q ss_pred             cCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 011845          177 ASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV  252 (476)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  252 (476)
                      .+.+.  +...++..+..    .+++..|.-+|+..-...|..+..+...+.+...+|++++|..+++.++..++++++.
T Consensus       166 ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet  243 (299)
T KOG3081|consen  166 IDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET  243 (299)
T ss_pred             cchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence            76554  33444444332    3568888889999888788888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhHHH-HHHHHHHccCCCChhH
Q 011845          253 WIAWGWMEWKEGNLDTAR-ELYERALSIDSTTESA  286 (476)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~  286 (476)
                      +.++..+-...|...++. +.+.+.....|+++.+
T Consensus       244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            999888888888776654 4556666667777544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.21  E-value=4.5e-10  Score=92.05  Aligned_cols=131  Identities=19%  Similarity=0.194  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 011845          232 ANLARKLFRRASEIDPRH--QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRL  309 (476)
Q Consensus       232 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  309 (476)
                      +..+...+...++..+.+  ...++.+|.++...|++++|+..|++++.+.|+......++.++|.++...|++++|+.+
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            444444554444444433  456778888888888888888888888877766544445677888888888888888888


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHH-------HcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhccc
Q 011845          310 FRSSLNINSQSYITWMTWAQLEE-------DQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLE  382 (476)
Q Consensus       310 ~~~al~~~p~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  382 (476)
                      |++++.++|.....+..++.++.       ..|+++.|...                        +++|+.+|++++..+
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~------------------------~~~a~~~~~~a~~~~  150 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAW------------------------FDQAAEYWKQAIALA  150 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHH------------------------HHHHHHHHHHHHHhC
Confidence            88888888888888888888887       45555544433                        445555666666666


Q ss_pred             cCCC
Q 011845          383 KSSY  386 (476)
Q Consensus       383 p~~~  386 (476)
                      |++.
T Consensus       151 p~~~  154 (168)
T CHL00033        151 PGNY  154 (168)
T ss_pred             cccH
Confidence            6543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.21  E-value=4.8e-10  Score=86.34  Aligned_cols=23  Identities=13%  Similarity=0.053  Sum_probs=8.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHh
Q 011845           15 VALGKVLSKQSKVAEARAIYAKG   37 (476)
Q Consensus        15 ~~la~~~~~~g~~~~A~~~~~~~   37 (476)
                      +.+|..+...|++++|+..|.++
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~   28 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAF   28 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            33333333333333333333333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=6.9e-10  Score=94.54  Aligned_cols=121  Identities=16%  Similarity=0.105  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc---cHHHHHHHHH
Q 011845           96 IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE---NNLAARQLFE  172 (476)
Q Consensus        96 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~  172 (476)
                      .+.-+.-++.-+..+|++.+.|..||.+|..+|++..|...|.+++++.|++++.+..+|.++....   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            4555666777778888888888888888888888888888888888888888888888888776553   3467888888


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 011845          173 RAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP  216 (476)
Q Consensus       173 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  216 (476)
                      +++..+|.+..+...++..++..|++.+|...++.++...|.+.
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            88888888888888888888888888888888888888877653

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.19  E-value=3.1e-07  Score=80.58  Aligned_cols=224  Identities=21%  Similarity=0.272  Sum_probs=185.1

Q ss_pred             hCCHHHHHHHHHHhhccCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHhccHHHHH
Q 011845           93 QGNIKKARQLLAKGLKFCGG--NEYIYQTLALLEAKANRYEQARNLFRQATK--CNPKSCASWIAWSQMEMQQENNLAAR  168 (476)
Q Consensus        93 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~  168 (476)
                      .+.+..+...+...+...+.  ........+..+...+.+..+...+.....  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            56777788888888877765  367888889999999999999999999987  67778888999999999999999999


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845          169 QLFERAVQASPKNRFAWHVWGI-FEANMGFIDKGKKLLKIGHAVNP---RDPVLLQSLALLEYKYSTANLARKLFRRASE  244 (476)
Q Consensus       169 ~~~~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  244 (476)
                      ..+..++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.++..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            9999999887776555555566 88999999999999999988666   3455666667777888899999999999999


Q ss_pred             cCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845          245 IDPR-HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ  319 (476)
Q Consensus       245 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  319 (476)
                      ..+. ....+..++..+...+++..|...+..++...|...   ..+...+..+...+.++++...+.+++...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNA---EALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccH---HHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9888 688889999999999999999999999999888732   23455566666777899999999999988887

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.19  E-value=9.2e-07  Score=85.62  Aligned_cols=387  Identities=13%  Similarity=0.001  Sum_probs=197.5

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA   82 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~   82 (476)
                      .++.+|+..-+....|..+.+.|+.++|..+++..-... +++...+..+-.+|..+|++++|..+|+++...+|. .+.
T Consensus        35 llkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel  112 (932)
T KOG2053|consen   35 LLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL  112 (932)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence            345666666666666777777777777775555543333 556666666666777777777777777777777776 666


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH-HhccH---------HHHHHHHHHHHhcC-CCch-hH
Q 011845           83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA-KANRY---------EQARNLFRQATKCN-PKSC-AS  150 (476)
Q Consensus        83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~g~~---------~~A~~~~~~~~~~~-p~~~-~~  150 (476)
                      ...+-.+|.+.+.|.+-.+.--+..+..|.++..+.....++. .....         .-|...+++.++.. +-.. .-
T Consensus       113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE  192 (932)
T KOG2053|consen  113 LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE  192 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH
Confidence            6666666666666665555544555555665543333333222 22111         12334444444443 1111 11


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHH-HHH-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH---------
Q 011845          151 WIAWSQMEMQQENNLAARQLFER-AVQ-ASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL---------  219 (476)
Q Consensus       151 ~~~la~~~~~~~~~~~A~~~~~~-a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------  219 (476)
                      ....-.++..+|.+++|...+.. ..+ ..+.+...-......+...+++.+-.++..+++...+++..++         
T Consensus       193 ~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe  272 (932)
T KOG2053|consen  193 IILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLE  272 (932)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHH
Confidence            12223445566778888777732 222 2333433334445555566666666666666666655541110         


Q ss_pred             ---------------------------------------HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH---------
Q 011845          220 ---------------------------------------QSLALLEYKYSTANLARKLFRRASEIDPRHQP---------  251 (476)
Q Consensus       220 ---------------------------------------~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------  251 (476)
                                                             ..+-.-+...|+.+++...|-+-+...|....         
T Consensus       273 ~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l  352 (932)
T KOG2053|consen  273 LLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHL  352 (932)
T ss_pred             hcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccC
Confidence                                                   00111111223444433333332222221000         


Q ss_pred             -------------------------H--HHHHHHHHHHcCCh-----hHHHHHHHHH-------Hcc----CCCChhHHH
Q 011845          252 -------------------------V--WIAWGWMEWKEGNL-----DTARELYERA-------LSI----DSTTESAAR  288 (476)
Q Consensus       252 -------------------------~--~~~l~~~~~~~g~~-----~~A~~~~~~a-------~~~----~~~~~~~~~  288 (476)
                                               .  +...-.+....|.+     +.-..++++.       ++.    .|.......
T Consensus       353 ~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~  432 (932)
T KOG2053|consen  353 NIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGD  432 (932)
T ss_pred             CHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHH
Confidence                                     0  00000011111211     1111111111       111    111111111


Q ss_pred             HHH-----HHHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcch
Q 011845          289 CLQ-----AWGVLEQRVGN---LSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDD  357 (476)
Q Consensus       289 ~~~-----~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~  357 (476)
                      .+.     .+-..+.+.++   +-+|+-.++..+..+|.+......+..+|.-.|-+..|.++|...--....   +...
T Consensus       433 ~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~  512 (932)
T KOG2053|consen  433 ELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL  512 (932)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH
Confidence            111     22344555554   457888899999999999999999999999999999999888765332221   1122


Q ss_pred             hhhhhhhcccchHHHHHHHHHhccccCCCCCCCC
Q 011845          358 ASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSA  391 (476)
Q Consensus       358 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  391 (476)
                      .-..+...|++.-+...+...+.+.-++.....+
T Consensus       513 ~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e  546 (932)
T KOG2053|consen  513 IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPE  546 (932)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH
Confidence            2334455677777777777777766555444433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=1e-09  Score=93.59  Aligned_cols=122  Identities=18%  Similarity=0.251  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 011845          164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYST---ANLARKLFR  240 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~  240 (476)
                      .+..+.-++.-+..+|++.+-|..+|.+|..+|++..|...|.+++++.|+++..+..+|.++....+   ..++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            45555666666777777777777777777777777777777777777777777777777766655432   356777777


Q ss_pred             HHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845          241 RASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES  285 (476)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  285 (476)
                      +++..+|.+..+.+.+|..++..|+|.+|...++..++..|.+..
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            777777777777777777777777777777777777777665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.19  E-value=7.1e-08  Score=92.02  Aligned_cols=113  Identities=13%  Similarity=0.123  Sum_probs=58.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCH
Q 011845           17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNI   96 (476)
Q Consensus        17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~   96 (476)
                      .|......|..++|..+|++.-.         +-.+-.+|...|.+++|.++.+.--.+.  --..++..|..+...++.
T Consensus       806 vAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di  874 (1416)
T KOG3617|consen  806 VAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI  874 (1416)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence            34444555666666666655422         1133445555566666555544321111  124556666666666666


Q ss_pred             HHHHHHHHHhhc----------cCC----------CcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845           97 KKARQLLAKGLK----------FCG----------GNEYIYQTLALLEAKANRYEQARNLFRQA  140 (476)
Q Consensus        97 ~~A~~~~~~~~~----------~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~  140 (476)
                      +.|+++|+++-.          -+|          .++..|...|..+...|+.+.|+.+|..+
T Consensus       875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            666666665421          122          22344555566666666666666666655

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=99.16  E-value=4.5e-07  Score=79.52  Aligned_cols=285  Identities=16%  Similarity=0.140  Sum_probs=120.6

Q ss_pred             hcCCHHHHHHHHHHhhccC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc-HHHHHHHHHHHHHhCCHHHHH
Q 011845           23 KQSKVAEARAIYAKGSQAT-QGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-IAAWHGWAVLELRQGNIKKAR  100 (476)
Q Consensus        23 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~  100 (476)
                      -.|+-..|.+.-.+.-+.- ....+-++..-+..-.-.|+++.|.+-|+.++.. |+. .-.+..+-.-....|..+.|+
T Consensus        96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr  174 (531)
T COG3898          96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR  174 (531)
T ss_pred             ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence            3445555554444443221 0112333333344445555555555555555431 211 111111222223445555555


Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCchh---HHHHHHHHH-HHhccHHHHHHHHHH
Q 011845          101 QLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN---PKSCA---SWIAWSQME-MQQENNLAARQLFER  173 (476)
Q Consensus       101 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~---~~~~la~~~-~~~~~~~~A~~~~~~  173 (476)
                      .+-+++-...|.-+.++...-...+..|+|+.|+++.+......   ++..+   +-..-+... .-..+...|...-.+
T Consensus       175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~  254 (531)
T COG3898         175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE  254 (531)
T ss_pred             HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            55555555555555555555555555555555555555443321   11110   000011111 111234445555555


Q ss_pred             HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHhccCCCCHHH
Q 011845          174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA-RKLFRRASEIDPRHQPV  252 (476)
Q Consensus       174 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~  252 (476)
                      ++++.|+....-..-+..+++.|+..++-.+++.+.+..| +|.++..  .++.+.|+.... .+-..+...+.|++.+.
T Consensus       255 a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk~nnaes  331 (531)
T COG3898         255 ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALL--YVRARSGDTALDRLKRAKKLESLKPNNAES  331 (531)
T ss_pred             HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcCccchHH
Confidence            5555555544444555555555555555555555555544 2222211  111222221111 11122223344555555


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHh
Q 011845          253 WIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV-GNLSAARRLFRSSLN  315 (476)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~  315 (476)
                      ....+......|++..|..--+.+....|...    ++..++.+.... |+-.+...++-++++
T Consensus       332 ~~~va~aAlda~e~~~ARa~Aeaa~r~~pres----~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         332 SLAVAEAALDAGEFSAARAKAEAAAREAPRES----AYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhhhCchhh----HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            55555555555555555555555555444432    223334444333 555555555555543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.16  E-value=1.2e-09  Score=89.85  Aligned_cols=118  Identities=12%  Similarity=0.147  Sum_probs=92.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHH
Q 011845           44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL  120 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  120 (476)
                      .....++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+++++...|.+...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            456677888888888888888888888888766543   46788888888888888888888888888888888888888


Q ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845          121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN  181 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  181 (476)
                      |.++...|+...+...+..++.                    .+.+|++++++++..+|++
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            8888888887776655555432                    3667777888888777766

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.16  E-value=4.8e-09  Score=84.08  Aligned_cols=198  Identities=20%  Similarity=0.150  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845          115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN  194 (476)
Q Consensus       115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  194 (476)
                      ..++..|..|-..|-+.-|.--|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++++|....+..+.|..+.-
T Consensus        66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY  145 (297)
T COG4785          66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  145 (297)
T ss_pred             HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence            44555666666677777777777777777777777777777777777777777777777777777776667777777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 011845          195 MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYE  274 (476)
Q Consensus       195 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  274 (476)
                      -|++.-|.+-+.+..+.+|++|.--..+-.. ...-++.+|...+.+-.+...+....|...+..   .|+..+ ...++
T Consensus       146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS~-e~l~~  220 (297)
T COG4785         146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKISE-ETLME  220 (297)
T ss_pred             cCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---HhhccH-HHHHH
Confidence            7777777777777777777666422211111 122345555544433222222222222222211   222211 12233


Q ss_pred             HHHccCCCChhH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845          275 RALSIDSTTESA----ARCLQAWGVLEQRVGNLSAARRLFRSSLNIN  317 (476)
Q Consensus       275 ~a~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  317 (476)
                      ++.....++...    .+.++-+|..+...|+.++|...|+-++..+
T Consensus       221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            333333333222    3456667777777788888887777776544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.15  E-value=3.1e-09  Score=84.55  Aligned_cols=116  Identities=17%  Similarity=0.131  Sum_probs=63.2

Q ss_pred             HcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhccHH
Q 011845           58 KLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIYQTLALLEAKANRYE  131 (476)
Q Consensus        58 ~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~  131 (476)
                      ..++...+...++.+...+|+.   ..+.+.+|.++...|++++|...|+.++...|+.   ..+.+.++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            3555555555555555555555   2444455566666666666666666665554332   234555566666666666


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845          132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA  174 (476)
Q Consensus       132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  174 (476)
                      +|+..++.. ...+-.+.++..+|.++...|++++|+..|+++
T Consensus       103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            666665442 222333445555666666666666666666554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.14  E-value=1e-09  Score=80.71  Aligned_cols=90  Identities=24%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845           52 WAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE  131 (476)
Q Consensus        52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  131 (476)
                      +|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..++.++...|+++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE   85 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333333333333333333


Q ss_pred             HHHHHHHHHH
Q 011845          132 QARNLFRQAT  141 (476)
Q Consensus       132 ~A~~~~~~~~  141 (476)
                      +|...+.+++
T Consensus        86 ~a~~~~~~~~   95 (100)
T cd00189          86 EALEAYEKAL   95 (100)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PRK11906 transcriptional regulator; Provisional

Probab=99.14  E-value=5.9e-09  Score=94.53  Aligned_cols=158  Identities=16%  Similarity=0.059  Sum_probs=98.7

Q ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHh---hcCcCcHHHHHHHHHHHHHh---------CCHHHHHHHHHHhhccCCCcH
Q 011845           50 QCWAVLENKLG---NIGKARELFDAST---VADKGHIAAWHGWAVLELRQ---------GNIKKARQLLAKGLKFCGGNE  114 (476)
Q Consensus        50 ~~la~~~~~~g---~~~~A~~~~~~~~---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~p~~~  114 (476)
                      +..|......+   ..+.|+.+|.+++   ..+|....++..++.++...         ....+|....+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            44555554444   3456777788888   77787777777777776643         234456666666667777777


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHH-HH
Q 011845          115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIF-EA  193 (476)
Q Consensus       115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~  193 (476)
                      .++..+|.+....++++.|...|++++.++|+.+.+|+..|.+....|+.++|...++++++++|....+-...-.+ .+
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~  418 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY  418 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence            77777777666666677777777777777777777777777766667777777777777777666554332222222 22


Q ss_pred             HcCCHHHHHHHHHH
Q 011845          194 NMGFIDKGKKLLKI  207 (476)
Q Consensus       194 ~~~~~~~A~~~~~~  207 (476)
                      -....+.|+.+|-+
T Consensus       419 ~~~~~~~~~~~~~~  432 (458)
T PRK11906        419 VPNPLKNNIKLYYK  432 (458)
T ss_pred             cCCchhhhHHHHhh
Confidence            33444555555443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.14  E-value=1.3e-09  Score=80.12  Aligned_cols=97  Identities=20%  Similarity=0.260  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845           83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE  162 (476)
Q Consensus        83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~  162 (476)
                      ++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            44555566666666666666666666655555555666666666666666666666666655555555555666666666


Q ss_pred             cHHHHHHHHHHHHHcCC
Q 011845          163 NNLAARQLFERAVQASP  179 (476)
Q Consensus       163 ~~~~A~~~~~~a~~~~~  179 (476)
                      ++++|...+.+++...|
T Consensus        83 ~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 KYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHccCC
Confidence            66666666555555444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=99.14  E-value=1.3e-06  Score=81.43  Aligned_cols=101  Identities=18%  Similarity=0.145  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Q 011845          183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID-PRHQPVWIAWGWMEW  261 (476)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  261 (476)
                      ..|..........|+++...-.|++++-........|..++......|+..-|...+..+.+.. |..+.+....+.+..
T Consensus       298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e  377 (577)
T KOG1258|consen  298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE  377 (577)
T ss_pred             HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence            3444445555555555555555555555554455555555555555555555555554444432 334444444444444


Q ss_pred             HcCChhHHHHHHHHHHccCCCC
Q 011845          262 KEGNLDTARELYERALSIDSTT  283 (476)
Q Consensus       262 ~~g~~~~A~~~~~~a~~~~~~~  283 (476)
                      ..|++..|...+++..+..|+.
T Consensus       378 ~~~n~~~A~~~lq~i~~e~pg~  399 (577)
T KOG1258|consen  378 SNGNFDDAKVILQRIESEYPGL  399 (577)
T ss_pred             hhccHHHHHHHHHHHHhhCCch
Confidence            4555555555555555444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.14  E-value=5.7e-09  Score=83.01  Aligned_cols=117  Identities=12%  Similarity=0.068  Sum_probs=51.9

Q ss_pred             cCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHH
Q 011845          229 YSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSA  305 (476)
Q Consensus       229 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  305 (476)
                      .++...+...++..+...|+.   ..+.+.+|.++...|++++|...|+.++...|+......+...++.++...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            344444444444444444444   23334444444444555555555555444443333333334444444555555555


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845          306 ARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNL  346 (476)
Q Consensus       306 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  346 (476)
                      |+..++. +...+-.+.++..+|.++...|++++|...|+.
T Consensus       104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5544433 122222333444444444444444444444443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1.5e-07  Score=78.31  Aligned_cols=256  Identities=14%  Similarity=0.009  Sum_probs=170.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ  132 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  132 (476)
                      .+-++-.|+|..++..-.+..... ........+.+.|..+|++...+.-....-   .....+...++.....-++.++
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence            445566788888888777765443 666777788888888888766555443332   1223445555665555555555


Q ss_pred             HHHHHHHHHhcCC--CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845          133 ARNLFRQATKCNP--KSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       133 A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  210 (476)
                      -+.-+.+.+....  .+......-+.++...|++++|.+.....     .+.++...-..++.+..+.+-|...++++..
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5544444333222  22334555567888888999998877662     3445666666778888888888888888887


Q ss_pred             cCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845          211 VNPRDPVLLQSLALLEYK----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA  286 (476)
Q Consensus       211 ~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  286 (476)
                      ++.+  .++..+|..+..    .+++.+|.-+|+..-+..|..+......+.++..+|++++|...++.++..+++++. 
T Consensus       166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe-  242 (299)
T KOG3081|consen  166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE-  242 (299)
T ss_pred             cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH-
Confidence            7643  344444444432    345778888888888877777888888888888888888888888888888888754 


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHH-HHHHHHhhCCCcHH
Q 011845          287 ARCLQAWGVLEQRVGNLSAARR-LFRSSLNINSQSYI  322 (476)
Q Consensus       287 ~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~  322 (476)
                        .+.++..+-...|...++.. ...+....+|+.+.
T Consensus       243 --tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  243 --TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             --HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence              46777777777777766554 34444455666653

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.12  E-value=2.9e-09  Score=94.95  Aligned_cols=155  Identities=14%  Similarity=0.081  Sum_probs=72.2

Q ss_pred             cHHHHHHHHHHHHHcCC--Cc----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHc
Q 011845          163 NNLAARQLFERAVQASP--KN----RFAWHVWGIFEANM-GFIDKGKKLLKIGHAVNPR--D----PVLLQSLALLEYKY  229 (476)
Q Consensus       163 ~~~~A~~~~~~a~~~~~--~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~  229 (476)
                      ++++|+.+|++++.+.-  +.    ...+..+|.+|... |++++|+++|++++.....  .    ..++..+|.++...
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l  168 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL  168 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence            55555555555544311  00    23444555555555 5666666666666554211  1    22445566666666


Q ss_pred             CCHHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH--HHHHHHHHHHHH--
Q 011845          230 STANLARKLFRRASEIDPRH-------QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA--ARCLQAWGVLEQ--  298 (476)
Q Consensus       230 ~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~l~~~~~--  298 (476)
                      |+|++|+..|++.....-++       ...++..+.++...|++..|...+++....+|.....  ..++..+..++.  
T Consensus       169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~  248 (282)
T PF14938_consen  169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG  248 (282)
T ss_dssp             T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence            66666666666655432111       1233445556666666666666666666666543322  223333333332  


Q ss_pred             HhCCHHHHHHHHHHHHhhC
Q 011845          299 RVGNLSAARRLFRSSLNIN  317 (476)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~  317 (476)
                      ....+++|+.-|.+...++
T Consensus       249 D~e~f~~av~~~d~~~~ld  267 (282)
T PF14938_consen  249 DVEAFTEAVAEYDSISRLD  267 (282)
T ss_dssp             -CCCHHHHCHHHTTSS---
T ss_pred             CHHHHHHHHHHHcccCccH
Confidence            2233555555555544443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.12  E-value=2.8e-09  Score=87.37  Aligned_cols=82  Identities=11%  Similarity=0.046  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845          182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD---PVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGW  258 (476)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  258 (476)
                      ...++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+..+++++.+.|.....+..+|.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            3445556666666666666666666666554432   2356666666666666666666666666666666666666666


Q ss_pred             HHHHc
Q 011845          259 MEWKE  263 (476)
Q Consensus       259 ~~~~~  263 (476)
                      ++...
T Consensus       115 i~~~~  119 (168)
T CHL00033        115 ICHYR  119 (168)
T ss_pred             HHHHh
Confidence            66533

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.11  E-value=3.7e-09  Score=91.76  Aligned_cols=109  Identities=15%  Similarity=0.111  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHH
Q 011845          216 PVLLQSLALLE-YKYSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQ  291 (476)
Q Consensus       216 ~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  291 (476)
                      ....+..+..+ ...|++++|+..|+..++..|++   +.+++.+|.+|+..|++++|+..|++++...|+++.....++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45556666554 55688888888888888888877   468888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH
Q 011845          292 AWGVLEQRVGNLSAARRLFRSSLNINSQSYITW  324 (476)
Q Consensus       292 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  324 (476)
                      .+|.++...|++++|...|+++++..|++..+.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            888888888889999999988888888877543

>PRK11906 transcriptional regulator; Provisional

Probab=99.11  E-value=2.2e-08  Score=90.92  Aligned_cols=145  Identities=12%  Similarity=0.157  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHH---hcCCCchhHHHHHHHHHHHh---------ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH
Q 011845          131 EQARNLFRQAT---KCNPKSCASWIAWSQMEMQQ---------ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFI  198 (476)
Q Consensus       131 ~~A~~~~~~~~---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  198 (476)
                      +.|+.+|.+++   .++|+...++..++.++...         ....+|.+..+++++++|.++.++..+|.++...+++
T Consensus       275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~  354 (458)
T PRK11906        275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA  354 (458)
T ss_pred             HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence            34444455555   44444444444444444332         1234455555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH-HHHcCChhHHHHHHHH
Q 011845          199 DKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWM-EWKEGNLDTARELYER  275 (476)
Q Consensus       199 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~  275 (476)
                      +.|...|++++.++|+.+.+++..|.+....|+.++|++.++++++++|....+-...-++ .+-....++|+.+|-+
T Consensus       355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence            5555555555555555555555555555555555555555555555555443322222222 2223345555555544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.10  E-value=4.2e-10  Score=76.84  Aligned_cols=65  Identities=18%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHhhccC
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG-NIKKARQLLAKGLKFC  110 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~  110 (476)
                      +..|..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...| ++++|+..++++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            3344444444444444444444444444444444444444444444444 3444444444444443

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.10  E-value=3.2e-10  Score=80.72  Aligned_cols=81  Identities=21%  Similarity=0.092  Sum_probs=40.3

Q ss_pred             cCCHHHHHHHHHHhhccCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHH
Q 011845           24 QSKVAEARAIYAKGSQATQGE-NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQL  102 (476)
Q Consensus        24 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~  102 (476)
                      +|+|++|+..|++++...+.+ +...++.+|.++++.|++++|+.++++ ...++.+....+.+|.++..+|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            345555555555555544211 333444455555555555555555555 444444445555555555555555555555


Q ss_pred             HHH
Q 011845          103 LAK  105 (476)
Q Consensus       103 ~~~  105 (476)
                      |++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.10  E-value=7.7e-09  Score=92.23  Aligned_cols=131  Identities=11%  Similarity=0.029  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------
Q 011845          150 SWIAWSQMEMQQ-ENNLAARQLFERAVQASPK--N----RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD-------  215 (476)
Q Consensus       150 ~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------  215 (476)
                      .+..+|.+|... |++++|+.+|+++++....  .    ...+..++.++...|+|++|+..|++.....-++       
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            344445555555 5566666666555554211  1    2344555666666666666666666655432111       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHH--cCChhHHHHHHHHHHccC
Q 011845          216 PVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ-----PVWIAWGWMEWK--EGNLDTARELYERALSID  280 (476)
Q Consensus       216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~  280 (476)
                      ...+...+.+++..|++..|...+++....+|...     .....+..++..  ...++.|+..|.....++
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld  267 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD  267 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence            12334455566666666666666666666655321     222333333322  234555555555544443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.09  E-value=8.3e-10  Score=75.38  Aligned_cols=64  Identities=19%  Similarity=0.284  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc-cHHHHHHHHHHHHHcC
Q 011845          115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE-NNLAARQLFERAVQAS  178 (476)
Q Consensus       115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~  178 (476)
                      .+|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...| ++++|+..++++++++
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            334444444444444444444444444444444444444444444444 3444444444444443

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.09  E-value=1.1e-08  Score=97.91  Aligned_cols=121  Identities=11%  Similarity=0.068  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh--------ccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHH
Q 011845          130 YEQARNLFRQATKCNPKSCASWIAWSQMEMQQ--------ENNLAARQLFERAVQA--SPKNRFAWHVWGIFEANMGFID  199 (476)
Q Consensus       130 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~  199 (476)
                      ...|+.+|+++++.+|++..++..++.++...        ++...+.....+++..  +|.++.++..+|..+...|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            44555555555555555555555544444332        1233444555554443  4555666666666666667777


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 011845          200 KGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP  251 (476)
Q Consensus       200 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  251 (476)
                      +|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++.
T Consensus       438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            77777777777776 4566677777777777777777777777777776653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.09  E-value=9e-09  Score=77.23  Aligned_cols=98  Identities=18%  Similarity=0.136  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---cHHHHHHH
Q 011845          251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ---SYITWMTW  327 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l  327 (476)
                      .+++.+|+++...|+.++|+.+|++++....+.......+..+|..+...|++++|...+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467778888888888888888888888877666666677778888888888888888888888887777   66677777


Q ss_pred             HHHHHHcCChHHHHHHHHHHH
Q 011845          328 AQLEEDQGNSVRAEEIRNLYF  348 (476)
Q Consensus       328 ~~~~~~~g~~~~A~~~~~~~~  348 (476)
                      +.++...|++++|...+-..+
T Consensus        82 Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            888888888888887765544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.09  E-value=5.3e-10  Score=79.61  Aligned_cols=81  Identities=28%  Similarity=0.253  Sum_probs=53.2

Q ss_pred             cCCHHHHHHHHHHHhhcCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 011845           59 LGNIGKARELFDASTVADKG--HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNL  136 (476)
Q Consensus        59 ~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  136 (476)
                      .|+++.|+..+++++...|.  +...++.+|.++++.|++++|+.++++ .+.+|.+....+.+|.++..+|++++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46677777777777766663  345566667777777777777777776 666666666666667777777777777777


Q ss_pred             HHHH
Q 011845          137 FRQA  140 (476)
Q Consensus       137 ~~~~  140 (476)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            6653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.08  E-value=1.3e-08  Score=97.39  Aligned_cols=146  Identities=13%  Similarity=0.088  Sum_probs=118.5

Q ss_pred             HHhcCCCchhHHH--HHHHHHHHh---ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHH
Q 011845          140 ATKCNPKSCASWI--AWSQMEMQQ---ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG--------FIDKGKKLLK  206 (476)
Q Consensus       140 ~~~~~p~~~~~~~--~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~  206 (476)
                      +....|.+..+|-  ..|..+...   +....|+.+|+++++.+|++..++..++.++....        +...+.....
T Consensus       329 ~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        329 LQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             HhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            3355567766654  344444443   34789999999999999999999888887775532        3456666677


Q ss_pred             HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845          207 IGHAV--NPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE  284 (476)
Q Consensus       207 ~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  284 (476)
                      +++..  .|.++.++..+|......|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.++|..+
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            76664  677788999999999999999999999999999999 478999999999999999999999999999999988


Q ss_pred             hH
Q 011845          285 SA  286 (476)
Q Consensus       285 ~~  286 (476)
                      ..
T Consensus       488 t~  489 (517)
T PRK10153        488 TL  489 (517)
T ss_pred             hH
Confidence            64

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.08  E-value=9.9e-09  Score=82.33  Aligned_cols=193  Identities=15%  Similarity=0.119  Sum_probs=143.5

Q ss_pred             hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011845          148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY  227 (476)
Q Consensus       148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  227 (476)
                      ...++..|..|-..|-+.-|.--|.+++.+.|+-+.+++.+|..+...|+++.|.+.|...++++|....+..+.|..++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            34567778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHhccCCCCHH--HHHHHHHHHHHcCChhHHHHHH-HHHHccCCCChhHHHHHHHHHHHHHHhCCHH
Q 011845          228 KYSTANLARKLFRRASEIDPRHQP--VWIAWGWMEWKEGNLDTARELY-ERALSIDSTTESAARCLQAWGVLEQRVGNLS  304 (476)
Q Consensus       228 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~-~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~  304 (476)
                      --|++.-|.+-+.+..+.+|++|.  .|..+.   ...-++.+|...+ +++...+.+....       -.+-.-+|+..
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~-------~iV~~yLgkiS  214 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGW-------NIVEFYLGKIS  214 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhH-------HHHHHHHhhcc
Confidence            999999999999999999999874  333322   2334666776554 4454444333211       11122233322


Q ss_pred             HHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhh
Q 011845          305 AARRLFRSSLNINSQS-------YITWMTWAQLEEDQGNSVRAEEIRNLYFQQR  351 (476)
Q Consensus       305 ~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  351 (476)
                      + ...++++..-..++       .++++.+|..+...|+.++|..+|+.++...
T Consensus       215 ~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         215 E-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             H-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            1 12233333322222       3578999999999999999999998877643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=99.07  E-value=5.7e-07  Score=78.88  Aligned_cols=260  Identities=15%  Similarity=0.046  Sum_probs=199.8

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN-PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL   89 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~   89 (476)
                      +-++..-++.-.-.|+++.|.+-|+.++..  |.. .-.+..+-.-....|..+.|+.+-+.+....|.-+.++...-..
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~  197 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLDD--PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA  197 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhcC--hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence            345566677888899999999999998643  221 11222233334578999999999999999999999999988888


Q ss_pred             HHHhCCHHHHHHHHHHhhcc---CCCcH---HH--HHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845           90 ELRQGNIKKARQLLAKGLKF---CGGNE---YI--YQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~---~p~~~---~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      .+..|+++.|+++.+.....   .++..   .+  +...+... -.-+...|...-.+++++.|+....-..-+..++..
T Consensus       198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d  276 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRD  276 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence            99999999999999876543   22211   11  12222222 234688899999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011845          162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI---GHAVNPRDPVLLQSLALLEYKYSTANLARKL  238 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  238 (476)
                      |+..++-.+++.+.+..|.. .++.  ..++.+.|+  .++.-+++   ...+.|++.+.....+...+..|++..|..-
T Consensus       277 ~~~rKg~~ilE~aWK~ePHP-~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~  351 (531)
T COG3898         277 GNLRKGSKILETAWKAEPHP-DIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK  351 (531)
T ss_pred             cchhhhhhHHHHHHhcCCCh-HHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence            99999999999999998864 3322  223344454  44444444   4456799999999999999999999999999


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHcc
Q 011845          239 FRRASEIDPRHQPVWIAWGWMEWKE-GNLDTARELYERALSI  279 (476)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~  279 (476)
                      -+.+....|.. .++..++.+.... |+-.++..++-+++..
T Consensus       352 Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         352 AEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            99999999875 6777788887765 9999999999999985

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.07  E-value=1.6e-06  Score=84.00  Aligned_cols=226  Identities=13%  Similarity=0.025  Sum_probs=160.1

Q ss_pred             HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHH
Q 011845           22 SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQ  101 (476)
Q Consensus        22 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~  101 (476)
                      ...+++.+|+....+.++.. |+...+...-|..+.++|+.++|..+++..-...+++...+-.+-.+|...|+.++|..
T Consensus        20 ld~~qfkkal~~~~kllkk~-Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKH-PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            45678888888888888887 78888888888888889999999888887777777777888888888888999999999


Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHhccH---------HHHHHHH
Q 011845          102 LLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM-EMQQENN---------LAARQLF  171 (476)
Q Consensus       102 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~~~~~~~---------~~A~~~~  171 (476)
                      +|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|..+........+ +......         .-|...+
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            99999988888 77777777888888887776666666666777776543333333 3322222         2345555


Q ss_pred             HHHHHcC-CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 011845          172 ERAVQAS-PK-NRFAWHVWGIFEANMGFIDKGKKLLKIG-HA-VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP  247 (476)
Q Consensus       172 ~~a~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  247 (476)
                      ++.++.. +- ...-....-.++..+|++++|..++..- .+ ..+.+..........+...+++.+-.++..+++...+
T Consensus       178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            6666554 21 1122234455667788888888887332 22 3333444445566777788888888888888888888


Q ss_pred             CC
Q 011845          248 RH  249 (476)
Q Consensus       248 ~~  249 (476)
                      ++
T Consensus       258 Dd  259 (932)
T KOG2053|consen  258 DD  259 (932)
T ss_pred             cc
Confidence            76

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.06  E-value=1.2e-10  Score=99.58  Aligned_cols=245  Identities=11%  Similarity=-0.035  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845           83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE  162 (476)
Q Consensus        83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~  162 (476)
                      +-..|.-|+++|.|++|+.+|.+++..+|.++..+.+.+..|++...+..|..-+..++.++.....+|...+..-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            44567777888888888888888888888778778888888888888888888888888877777777777777777888


Q ss_pred             cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHHHHcCCHH
Q 011845          163 NNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVL---------LQSLALLEYKYSTAN  233 (476)
Q Consensus       163 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~la~~~~~~~~~~  233 (476)
                      ...+|.+-++.++.+.|++.+..-.++.+-.    ..++.-..    +..|....+         .-.-|..+...|.++
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I~~----KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~  251 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKIAT----KSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS  251 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhHHh----hcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence            8888888888888888876555444443322    22221111    111111111         112345566677777


Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845          234 LARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSS  313 (476)
Q Consensus       234 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  313 (476)
                      .++.++.+-+.....+.....+ +..+.+..+++.++....+++..+|.....   ...-+.+-.-.|...++...++.+
T Consensus       252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~---~s~~~~A~T~~~~~~E~K~~~~T~  327 (536)
T KOG4648|consen  252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPD---TSGPPKAETIAKTSKEVKPTKQTA  327 (536)
T ss_pred             cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcc---cCCCchhHHHHhhhhhcCcchhhe
Confidence            7777776665555444333333 566667777778877777777665544221   222344444567777888888888


Q ss_pred             HhhCCCcHHHHHHHHHH---HHHcCChHH
Q 011845          314 LNINSQSYITWMTWAQL---EEDQGNSVR  339 (476)
Q Consensus       314 l~~~p~~~~~~~~l~~~---~~~~g~~~~  339 (476)
                      +.+.|.+......+...   ....|+++.
T Consensus       328 ~~~~P~~~~~~~~~sr~~~~ii~~~~~~~  356 (536)
T KOG4648|consen  328 VKVAPAVETPKETETRKDTKIVPESDNEA  356 (536)
T ss_pred             eeeccccccchhhhhhhcccccccccccc
Confidence            88877765444333333   334455554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=6.1e-09  Score=92.05  Aligned_cols=129  Identities=21%  Similarity=0.148  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCCC---CC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQATQG---EN-----------PYIWQCWAVLENKLGNIGKARELFDASTVADKGH   79 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~   79 (476)
                      ....|..+++.|+|..|...|++++..-..   .+           ..++.+++.|+.++++|.+|+....+++..+|+|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            445688888999999999999998754311   11           1234444445555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHH-HHHHHHHHh
Q 011845           80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQA-RNLFRQATK  142 (476)
Q Consensus        80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~  142 (476)
                      ..+++..|.++...|+++.|+..|++++++.|.|..+...+..+..+...+.+. .+.|..++.
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555555555555555555555555555555554444444444444433333222 344444443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.04  E-value=1e-08  Score=79.71  Aligned_cols=100  Identities=16%  Similarity=0.074  Sum_probs=60.1

Q ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845           77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ  156 (476)
Q Consensus        77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  156 (476)
                      ++..+..+..|.-++..|++++|..+|+-+...+|.++..+..||.++...+++++|+..|..+..+.++++...+..|.
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            33345555555556666666666666666655566666666666666666666666666666666666666666666666


Q ss_pred             HHHHhccHHHHHHHHHHHHH
Q 011845          157 MEMQQENNLAARQLFERAVQ  176 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~  176 (476)
                      ++...|+.+.|+.+|..++.
T Consensus       114 C~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            66666666666666666555

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.03  E-value=1.3e-09  Score=73.29  Aligned_cols=58  Identities=17%  Similarity=0.211  Sum_probs=22.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC
Q 011845           54 VLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG  111 (476)
Q Consensus        54 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  111 (476)
                      ..++..|++++|+..|++++..+|.++.+|+.+|.++..+|++++|+..|+++++.+|
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            3333333333333333333333333333333333333333333333333333333333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.03  E-value=1.8e-09  Score=72.69  Aligned_cols=60  Identities=27%  Similarity=0.371  Sum_probs=24.7

Q ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Q 011845          121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK  180 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  180 (476)
                      |..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            333444444444444444444444444444444444444444444444444444444443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=9.3e-09  Score=90.95  Aligned_cols=129  Identities=16%  Similarity=0.145  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCC----c-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGG----N-----------EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC  148 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  148 (476)
                      ...|..+++.|+|..|...|++++..-..    +           ..++.+++.++.++++|.+|+..+.+++..+|++.
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~  291 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV  291 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence            34567777777777777777777654221    0           23567777777777777777777777777777777


Q ss_pred             hHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 011845          149 ASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKG-KKLLKIGHAVN  212 (476)
Q Consensus       149 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~  212 (476)
                      .+++..|.++...|+++.|+..|+++++..|.|..+...+..+..+..++.+. .+.|..++...
T Consensus       292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            77777777777777777777777777777777777777776666655554443 55666665443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.01  E-value=1.6e-08  Score=87.82  Aligned_cols=102  Identities=13%  Similarity=0.103  Sum_probs=50.4

Q ss_pred             HHHHHHHHHH-HHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---hhHHHH
Q 011845           81 AAWHGWAVLE-LRQGNIKKARQLLAKGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKS---CASWIA  153 (476)
Q Consensus        81 ~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~  153 (476)
                      ..++..+..+ ...|++++|+..|++.++..|++   +.+++.+|.+|...|++++|+..|+++++..|++   +++++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3333333333 33455555555555555555544   2455555555555555555555555555444432   344555


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNR  182 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~  182 (476)
                      +|.++...|++++|...|+++++..|++.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            55555555555555555555555555443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.00  E-value=1.9e-05  Score=72.62  Aligned_cols=342  Identities=14%  Similarity=0.144  Sum_probs=218.4

Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH
Q 011845           35 AKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE  114 (476)
Q Consensus        35 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  114 (476)
                      ++-++.+ |.|...|+.+..-+... -+++..+.|++.+...|..+.+|...+...+..++|+...++|.+++...- +.
T Consensus        10 ~~rie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nl   86 (656)
T KOG1914|consen   10 RERIEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NL   86 (656)
T ss_pred             HHHHhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hH
Confidence            4556666 99999999998877665 999999999999999999999999999999999999999999999986532 34


Q ss_pred             HHHHH-HHHHHHHhccHHHHHH----HHHHHHh---cCCCchhHHHHHHHHHH---------HhccHHHHHHHHHHHHHc
Q 011845          115 YIYQT-LALLEAKANRYEQARN----LFRQATK---CNPKSCASWIAWSQMEM---------QQENNLAARQLFERAVQA  177 (476)
Q Consensus       115 ~~~~~-la~~~~~~g~~~~A~~----~~~~~~~---~~p~~~~~~~~la~~~~---------~~~~~~~A~~~~~~a~~~  177 (476)
                      +.|.. +..+-...|+...+..    .|+-++.   .++.+...|...+..+.         ...+.+.-.+.|++++..
T Consensus        87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t  166 (656)
T KOG1914|consen   87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT  166 (656)
T ss_pred             hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence            44433 3333333444433322    2333332   34555566666555432         233555666777777654


Q ss_pred             CCCcH-HHHHHHHH-------------HHHHcCCHHHHHHH---------------------------------------
Q 011845          178 SPKNR-FAWHVWGI-------------FEANMGFIDKGKKL---------------------------------------  204 (476)
Q Consensus       178 ~~~~~-~~~~~l~~-------------~~~~~~~~~~A~~~---------------------------------------  204 (476)
                      .-.+. ..|...-.             +......|..|...                                       
T Consensus       167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w  246 (656)
T KOG1914|consen  167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW  246 (656)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence            33331 12211110             00111122223222                                       


Q ss_pred             ---------------------HHHHHhcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhccCC-C
Q 011845          205 ---------------------LKIGHAVNPRDPVLLQSLALLEYKYST--------------ANLARKLFRRASEIDP-R  248 (476)
Q Consensus       205 ---------------------~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~-~  248 (476)
                                           +++++..-+-.+++|+..+..+...++              .+++..+|++++.... .
T Consensus       247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~  326 (656)
T KOG1914|consen  247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE  326 (656)
T ss_pred             HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence                                 233333344556677777766666665              6789999999987543 3


Q ss_pred             CHHHHHHHHHHHHHcC---ChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 011845          249 HQPVWIAWGWMEWKEG---NLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWM  325 (476)
Q Consensus       249 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  325 (476)
                      +...++.++..-...-   +++.--..+++++.+...+...  ++..+...-.+..-...|+.+|.++-+..-....++.
T Consensus       327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL--v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV  404 (656)
T KOG1914|consen  327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL--VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV  404 (656)
T ss_pred             HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce--ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence            4455555555444333   3778888899888876555443  4555667777778889999999999776444334444


Q ss_pred             HHHHH-HHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhcccchHHHHHHHHHhcc
Q 011845          326 TWAQL-EEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDIIDPALDRIKQLLNL  381 (476)
Q Consensus       326 ~l~~~-~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~  381 (476)
                      .-|.+ |...++.+-|..+|+.-+...++   ........+..+++-..|..+|++++..
T Consensus       405 a~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  405 AAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            44433 34578999999999988886553   3344555566667666666777766665

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.00  E-value=6.2e-10  Score=95.25  Aligned_cols=233  Identities=11%  Similarity=-0.054  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 011845           49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN  128 (476)
Q Consensus        49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g  128 (476)
                      .-..|.-|+++|.|++|+.+|.+.+..+|.++..+.+.+.+|+++..|..|..-+..++.++.....+|...+..-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            34567788888888888888888888888888888888888888888888888888888888777788888888888888


Q ss_pred             cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHH---------HHHHHHHHHHcCCHH
Q 011845          129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFA---------WHVWGIFEANMGFID  199 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~l~~~~~~~~~~~  199 (476)
                      ...+|.+-++.++.+.|++.+....++.+-.    ..++.-    +.+..|....+         .-.-|..+...|.++
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~  251 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI----ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS  251 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH----HhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence            8888888888888888887665544444322    222111    11111111111         112345566777888


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845          200 KGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI  279 (476)
Q Consensus       200 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  279 (476)
                      .++.++.+-+....++.....+ +..+.+..+++.++.-..+++..+|........-+.+-.-.|...++...++.++.+
T Consensus       252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~  330 (536)
T KOG4648|consen  252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV  330 (536)
T ss_pred             cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence            8888887766655554444344 666677777888888888887777766555666666666677788888888888888


Q ss_pred             CCCChhHHHHH
Q 011845          280 DSTTESAARCL  290 (476)
Q Consensus       280 ~~~~~~~~~~~  290 (476)
                      .|.+......+
T Consensus       331 ~P~~~~~~~~~  341 (536)
T KOG4648|consen  331 APAVETPKETE  341 (536)
T ss_pred             ccccccchhhh
Confidence            88776654333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.99  E-value=2.2e-08  Score=91.53  Aligned_cols=115  Identities=13%  Similarity=0.150  Sum_probs=54.7

Q ss_pred             HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 011845          123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK  202 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  202 (476)
                      ++...++++.|+.++++..+.+|+   +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL  254 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL  254 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            333344444444444444444332   33334444444444444455555544444444444444444444455555555


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR  240 (476)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  240 (476)
                      .+.+++....|.+...|..|+.+|...|+++.|+..++
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            55555555555444455555555555555555544444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.99  E-value=2.2e-08  Score=91.43  Aligned_cols=122  Identities=17%  Similarity=0.077  Sum_probs=88.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH
Q 011845           85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN  164 (476)
Q Consensus        85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~  164 (476)
                      .+..++...++++.|+.++++..+.+|+   +...++.++...++..+|++.+.++++..|.+...+...+..+...+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            3445555667777777777777766653   4555677777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845          165 LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGH  209 (476)
Q Consensus       165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  209 (476)
                      +.|+.+.++++...|.+...|+.++.+|...|+++.|+..++.+-
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            777777777777777777777777777777777777777766543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15331 chaperone protein SicA; Provisional

Probab=98.97  E-value=1.9e-08  Score=78.32  Aligned_cols=102  Identities=11%  Similarity=-0.024  Sum_probs=78.9

Q ss_pred             cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHH
Q 011845          109 FCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVW  188 (476)
Q Consensus       109 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  188 (476)
                      +.++..+..+..|.-++..|++++|..+|+-+...+|.+++.|..||.++...+++++|+..|..+..++++++...+..
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            33444556677777777788888888888887777787778888888888888888888888888877777777777788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 011845          189 GIFEANMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       189 ~~~~~~~~~~~~A~~~~~~~~~  210 (476)
                      |.++...|+.+.|+.+|..++.
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Confidence            8888888888888888877776

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=1.9e-05  Score=71.58  Aligned_cols=128  Identities=15%  Similarity=0.101  Sum_probs=95.2

Q ss_pred             chhHHHHHHHHHhcC--CHHHHHHHHHHhhccCCCCChH--HHHHHHHH-HHHcCCHHHHHHHHHHHhhcC---cCc---
Q 011845           11 GRPYVALGKVLSKQS--KVAEARAIYAKGSQATQGENPY--IWQCWAVL-ENKLGNIGKARELFDASTVAD---KGH---   79 (476)
Q Consensus        11 ~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~--~~~~la~~-~~~~g~~~~A~~~~~~~~~~~---p~~---   79 (476)
                      ..++..+|..+...|  +...++++++......+|...+  ....+|.+ +....+++.|...++++..+.   |..   
T Consensus         7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv   86 (629)
T KOG2300|consen    7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV   86 (629)
T ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence            356777888888888  8899999999988776444333  44555654 456788999999999987432   333   


Q ss_pred             -HHHHHHHHHHHHHhC-CHHHHHHHHHHhhccCCCcHH----HHHHHHHHHHHhccHHHHHHHHH
Q 011845           80 -IAAWHGWAVLELRQG-NIKKARQLLAKGLKFCGGNEY----IYQTLALLEAKANRYEQARNLFR  138 (476)
Q Consensus        80 -~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~  138 (476)
                       .++...++.+|.... .+..+...++++++.....+.    ..+.++.++.-..++..|++.+.
T Consensus        87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen   87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence             355667888888877 788899999999988766653    45678888888888888887743

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=98.97  E-value=2.4e-05  Score=70.34  Aligned_cols=373  Identities=13%  Similarity=0.135  Sum_probs=224.6

Q ss_pred             cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845            4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus         4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      ++-+|+|...|+.+.+.+..+|.+++-.+.|++...-. |--+.+|......-....++.....+|.+++... -+.+.|
T Consensus        35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW  112 (660)
T COG5107          35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLW  112 (660)
T ss_pred             hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHH
Confidence            57799999999999999999999999999999997766 7777788777666666788888888888887542 234555


Q ss_pred             HHHHHHHHHhC---------CHHHHHHHHHHhhccCCCcHHHHHHHHHHHH---------HhccHHHHHHHHHHHHhcCC
Q 011845           84 HGWAVLELRQG---------NIKKARQLLAKGLKFCGGNEYIYQTLALLEA---------KANRYEQARNLFRQATKCNP  145 (476)
Q Consensus        84 ~~la~~~~~~~---------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~~~~~p  145 (476)
                      ......-.+.+         ..-+|-+..-...-.+|.....|...+..+.         .+.+.+.-...|.+++...-
T Consensus       113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~  192 (660)
T COG5107         113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPM  192 (660)
T ss_pred             HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcc
Confidence            44333222222         1223333333333445655555555554432         23344455555666655422


Q ss_pred             Cchh-HH-----------------------------------------------------------------HHHHHHHH
Q 011845          146 KSCA-SW-----------------------------------------------------------------IAWSQMEM  159 (476)
Q Consensus       146 ~~~~-~~-----------------------------------------------------------------~~la~~~~  159 (476)
                      ++.+ .|                                                                 .++.....
T Consensus       193 ~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~  272 (660)
T COG5107         193 GNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEM  272 (660)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhh
Confidence            2211 11                                                                 11111111


Q ss_pred             Hh-----ccH--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 011845          160 QQ-----ENN--LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA  232 (476)
Q Consensus       160 ~~-----~~~--~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  232 (476)
                      ..     |+.  ..---.+++++...|-.+++|+.....+...++-+.|+....+++...|.   ....++.+|...++-
T Consensus       273 en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~  349 (660)
T COG5107         273 ENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDE  349 (660)
T ss_pred             cCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccH
Confidence            00     000  11112334455555555677777777777888888888888888776665   556667776666665


Q ss_pred             HHHHHHHHHHhcc------------------CCC-CHH-----------HHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845          233 NLARKLFRRASEI------------------DPR-HQP-----------VWIAWGWMEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       233 ~~A~~~~~~~~~~------------------~~~-~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                      +....+|+++.+.                  +|. .++           +|..+...-.+..-.+.|..+|-++-+..--
T Consensus       350 e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~  429 (660)
T COG5107         350 EAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV  429 (660)
T ss_pred             HHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence            5555555554321                  010 011           1222222223444567778888877665311


Q ss_pred             ChhHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh-----hcc
Q 011845          283 TESAARCLQAWG-VLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE-----VVD  356 (476)
Q Consensus       283 ~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~  356 (476)
                      ..   .++..-| .-+...|++.-|..+|+-.+...|+++.....+-..+...++-+.|..+|+..+.+-..     ++.
T Consensus       430 ~h---~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~  506 (660)
T COG5107         430 GH---HVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYD  506 (660)
T ss_pred             Cc---ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHH
Confidence            11   1122222 33567899999999999999999999988888889999999999999999987764332     233


Q ss_pred             hhhhhhhhcccchHHHHHHHHHhccccC
Q 011845          357 DASWVMGFMDIIDPALDRIKQLLNLEKS  384 (476)
Q Consensus       357 ~~~~~~~~~g~~~~A~~~~~~al~~~p~  384 (476)
                      .....-...|++..+..+=++...+-|.
T Consensus       507 kmi~YEs~~G~lN~v~sLe~rf~e~~pQ  534 (660)
T COG5107         507 KMIEYESMVGSLNNVYSLEERFRELVPQ  534 (660)
T ss_pred             HHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence            3333344556666666555555554443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.92  E-value=7.2e-07  Score=74.69  Aligned_cols=172  Identities=16%  Similarity=0.095  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH---HHHHH
Q 011845          114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKS---CASWIAWSQMEMQQENNLAARQLFERAVQASPKNR---FAWHV  187 (476)
Q Consensus       114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~  187 (476)
                      +..++.-|....+.|++++|+..|+.+...+|..   ..+.+.++..+.+.+++++|+..+++-+.+.|.++   .+++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            4455555666666666666666666666555543   23555555666666666666666666666555543   23333


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH----------------
Q 011845          188 WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP----------------  251 (476)
Q Consensus       188 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------  251 (476)
                      .|.++...=+.                          .-....-...|+..|+..+...|++.-                
T Consensus       114 kgLs~~~~i~~--------------------------~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA  167 (254)
T COG4105         114 KGLSYFFQIDD--------------------------VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALA  167 (254)
T ss_pred             HHHHHhccCCc--------------------------cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHH
Confidence            33332211000                          000001112344445555555554321                


Q ss_pred             -HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011845          252 -VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFR  311 (476)
Q Consensus       252 -~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  311 (476)
                       -=..+|..|.+.|.+..|+..++.+++..|+.......+..+..+|..+|-.++|...-.
T Consensus       168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~  228 (254)
T COG4105         168 GHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK  228 (254)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence             113456677777777777777777777777766666677777777777777777766544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.91  E-value=7.8e-07  Score=74.48  Aligned_cols=188  Identities=14%  Similarity=0.021  Sum_probs=105.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH---HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH---HHHH
Q 011845           45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI---AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE---YIYQ  118 (476)
Q Consensus        45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~  118 (476)
                      .+..|+.-|...++.|++++|+..|+.+....|..+   .+...++.++++.+++++|+..+++-+.+.|.++   .+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            456677777777788888888888888777666543   6677777777888888888888888777776554   3555


Q ss_pred             HHHHHHHHh--------ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845          119 TLALLEAKA--------NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI  190 (476)
Q Consensus       119 ~la~~~~~~--------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  190 (476)
                      ..|.++...        .-..+|+..|+..+...|++.-+-.....+           ..+...+      ..--...|.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~Iar  175 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAIAR  175 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHHHH
Confidence            555554432        234456666667777777653211000000           0000000      011134455


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 011845          191 FEANMGFIDKGKKLLKIGHAVNPRD---PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH  249 (476)
Q Consensus       191 ~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  249 (476)
                      .|.+.|.+..|+.-++.+++..|+.   .+++..+..+|...|-.++|...-.-.-...|++
T Consensus       176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            5556666666666666665554443   2345555555666666555555443333333433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.90  E-value=5.3e-08  Score=82.18  Aligned_cols=108  Identities=19%  Similarity=0.192  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 011845          219 LQSLALLEYKYSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGV  295 (476)
Q Consensus       219 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~  295 (476)
                      .+..|.-++..|+|..|...|...++..|++   +.+++.||.+++.+|+++.|...|..+.+-.|+++.+.+.++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6788888889999999999999999998875   4789999999999999999999999999999999998899999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 011845          296 LEQRVGNLSAARRLFRSSLNINSQSYITWMT  326 (476)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  326 (476)
                      +...+|+.++|...|+++++..|+...+...
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999999999998766543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.89  E-value=7.7e-08  Score=72.22  Aligned_cols=90  Identities=21%  Similarity=0.099  Sum_probs=35.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCC---cHHHHHHHHHH
Q 011845           50 QCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG---NEYIYQTLALL  123 (476)
Q Consensus        50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~  123 (476)
                      +.+|.++-..|+.++|+.+|++++......   ..+++.+|..+...|++++|+.++++.+...|+   +..+...++.+
T Consensus         5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence            333444444444444444444443322111   233334444444444444444444444433333   33333333344


Q ss_pred             HHHhccHHHHHHHHHH
Q 011845          124 EAKANRYEQARNLFRQ  139 (476)
Q Consensus       124 ~~~~g~~~~A~~~~~~  139 (476)
                      +...|++++|+..+-.
T Consensus        85 L~~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLE  100 (120)
T ss_pred             HHHCCCHHHHHHHHHH
Confidence            4444444444444333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.88  E-value=1e-08  Score=69.68  Aligned_cols=65  Identities=29%  Similarity=0.221  Sum_probs=37.1

Q ss_pred             HHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHH
Q 011845           57 NKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA  121 (476)
Q Consensus        57 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la  121 (476)
                      +..|++++|+..|++++..+|++..+++.+|.++...|++++|..++++++..+|+++.++..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            34555666666666666666666666666666666666666666666666655555555544444

...

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.88  E-value=2.5e-06  Score=77.09  Aligned_cols=56  Identities=20%  Similarity=0.141  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcch-----hhhhhhhcccchHHHHHHHHH
Q 011845          323 TWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDD-----ASWVMGFMDIIDPALDRIKQL  378 (476)
Q Consensus       323 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~A~~~~~~a  378 (476)
                      .+++++..+.-.|++++|..++..+...-+.....     ..++-.++|+.+.|+..+++.
T Consensus       621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~  681 (696)
T KOG2471|consen  621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC  681 (696)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence            45667777777777777777766555543322221     222334566777776666654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=7.1e-06  Score=68.35  Aligned_cols=144  Identities=13%  Similarity=0.102  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHH
Q 011845          150 SWIAWSQMEMQQENNLAARQLFERAVQAS-PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN------PRDPVLLQSL  222 (476)
Q Consensus       150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l  222 (476)
                      +.+.++.++...|.|.-....+.+.++.+ |.++.....++.+..+.|+.+.|..++++.-+..      .....+..+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            45556666666777777777777777666 4556666677777777777777777776443221      1223455566


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHH
Q 011845          223 ALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW  293 (476)
Q Consensus       223 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l  293 (476)
                      +.++...+++..|...+.+++..+|.++.+.++.+.|..-.|+..+|++.++.++...|.......++.++
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL  329 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL  329 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence            66666677777777777777777777777777777777777777777777777777766654433333333

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.87  E-value=3.7e-05  Score=71.98  Aligned_cols=362  Identities=13%  Similarity=0.098  Sum_probs=249.7

Q ss_pred             CHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH-HHHHHhCCHHHHHHHHH
Q 011845           26 KVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA-VLELRQGNIKKARQLLA  104 (476)
Q Consensus        26 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~  104 (476)
                      ..+.+...|...+... |..-..|...|..-.+.|..+.+..+|++++..-|...+.|..+. .+-...|+.+.-...|+
T Consensus        60 ~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe  138 (577)
T KOG1258|consen   60 DVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE  138 (577)
T ss_pred             HHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            3466677777777777 778889999999999999999999999999999998888888544 44446688888889999


Q ss_pred             HhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH------hccHHHHHHHHHHHH
Q 011845          105 KGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ------QENNLAARQLFERAV  175 (476)
Q Consensus       105 ~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~------~~~~~~A~~~~~~a~  175 (476)
                      ++......+   ...|..+......++++..-..+|++.++.--.....++..-.-+..      .-..+++...-....
T Consensus       139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~  218 (577)
T KOG1258|consen  139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA  218 (577)
T ss_pred             HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence            998876543   45777777777888999999999999998743333222221111111      112233322222211


Q ss_pred             Hc---------------------CCCc--HHHHHHHH-------HHHHHcCCHHHHHHHHHHHHhc-----CCC---CHH
Q 011845          176 QA---------------------SPKN--RFAWHVWG-------IFEANMGFIDKGKKLLKIGHAV-----NPR---DPV  217 (476)
Q Consensus       176 ~~---------------------~~~~--~~~~~~l~-------~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~  217 (476)
                      ..                     .|..  ......+.       .++.......+.+..++..+..     .|.   .-.
T Consensus       219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~  298 (577)
T KOG1258|consen  219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK  298 (577)
T ss_pred             hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence            10                     0100  00110111       1122222333344444444432     222   234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHH
Q 011845          218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLE  297 (476)
Q Consensus       218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~  297 (476)
                      .|..........|+++...-.|++++--.......|...+......|+.+-|...+..+.++.-.....  +....+.+.
T Consensus       299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~--i~L~~a~f~  376 (577)
T KOG1258|consen  299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI--IHLLEARFE  376 (577)
T ss_pred             HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH--HHHHHHHHH
Confidence            677888888999999999999999999888899999999999999999999999999998875443332  233347888


Q ss_pred             HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHH---HHHHHHhhh--hhhc----chhhh-hhhhccc
Q 011845          298 QRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE---IRNLYFQQR--TEVV----DDASW-VMGFMDI  367 (476)
Q Consensus       298 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~--~~~~----~~~~~-~~~~~g~  367 (476)
                      ...|++..|..++++.....|+...+-...+....+.|+.+.+..   ++.......  ..+.    ...++ .+...++
T Consensus       377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d  456 (577)
T KOG1258|consen  377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED  456 (577)
T ss_pred             HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence            889999999999999999889999988889999999999999883   333333211  1111    12222 3445578


Q ss_pred             chHHHHHHHHHhccccCCCCCCC
Q 011845          368 IDPALDRIKQLLNLEKSSYKEPS  390 (476)
Q Consensus       368 ~~~A~~~~~~al~~~p~~~~~~~  390 (476)
                      .+.|...+.+++++.|++.....
T Consensus       457 ~~~a~~~l~~~~~~~~~~k~~~~  479 (577)
T KOG1258|consen  457 ADLARIILLEANDILPDCKVLYL  479 (577)
T ss_pred             HHHHHHHHHHhhhcCCccHHHHH
Confidence            89999999999999998766553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.84  E-value=1.3e-07  Score=71.99  Aligned_cols=108  Identities=16%  Similarity=0.123  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845          216 PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA  292 (476)
Q Consensus       216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  292 (476)
                      +..++.-|.-.+..|+|.+|++.|+.+....|..   ..+.+.++.+|+..|++++|+..+++.++++|.++.+..+++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            5567777777788888888888888877777653   3577778888888888888888888888888888877777777


Q ss_pred             HHHHHHHhCC---------------HHHHHHHHHHHHhhCCCcHHH
Q 011845          293 WGVLEQRVGN---------------LSAARRLFRSSLNINSQSYIT  323 (476)
Q Consensus       293 l~~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~  323 (476)
                      .|.++.....               ..+|...|++.+...|++..+
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            7777777665               678888888888888887643

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.83  E-value=1.8e-08  Score=68.44  Aligned_cols=59  Identities=24%  Similarity=0.321  Sum_probs=27.0

Q ss_pred             hccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHH
Q 011845          127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW  185 (476)
Q Consensus       127 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  185 (476)
                      .|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            44444444444444444444444444444444444444444444444444444444333

...

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=6.3e-07  Score=80.84  Aligned_cols=151  Identities=15%  Similarity=0.108  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-hccCCC--------CHHHHH
Q 011845          184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA-SEIDPR--------HQPVWI  254 (476)
Q Consensus       184 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~~~--------~~~~~~  254 (476)
                      +.......+....+...+..-.+.+..+..+.+..+...+..++..|++.+|.+.+... +...|.        ....|.
T Consensus       208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N  287 (696)
T KOG2471|consen  208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN  287 (696)
T ss_pred             hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence            33444556677777777888888888888888889999999999999999999887653 222232        234678


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHcc---------CCCC------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845          255 AWGWMEWKEGNLDTARELYERALSI---------DSTT------ESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ  319 (476)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~a~~~---------~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  319 (476)
                      ++|.++++.|.|.-+..+|.++++-         .|..      .....++++.|..|...|++-.|.++|.+++.....
T Consensus       288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~  367 (696)
T KOG2471|consen  288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR  367 (696)
T ss_pred             CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999851         1111      112567899999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHc
Q 011845          320 SYITWMTWAQLEEDQ  334 (476)
Q Consensus       320 ~~~~~~~l~~~~~~~  334 (476)
                      ++..|..++.|....
T Consensus       368 nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  368 NPRLWLRLAECCIMA  382 (696)
T ss_pred             CcHHHHHHHHHHHHH
Confidence            999999999998754

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.76  E-value=2.7e-06  Score=66.95  Aligned_cols=141  Identities=13%  Similarity=0.122  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845          166 AARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA-VNPRDPVLLQSLALLEYKYSTANLARKLFRRASE  244 (476)
Q Consensus       166 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  244 (476)
                      ....-..+.+...|.. .-.+.++..+...|++.+|...|++++. +..+++..+..+++..+..+++..|...+++..+
T Consensus        74 R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e  152 (251)
T COG4700          74 RHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME  152 (251)
T ss_pred             HHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence            3333333333344433 2334555555555555555555555543 3344555555555555555555555555555555


Q ss_pred             cCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011845          245 IDPR--HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFR  311 (476)
Q Consensus       245 ~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  311 (476)
                      .+|.  .++....+|..+...|.+.+|...|+.++...|+....    ..++..+.++|+.++|..-+.
T Consensus       153 ~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar----~~Y~e~La~qgr~~ea~aq~~  217 (251)
T COG4700         153 YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQAR----IYYAEMLAKQGRLREANAQYV  217 (251)
T ss_pred             cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH----HHHHHHHHHhcchhHHHHHHH
Confidence            5542  34445555555555555555555555555555543221    222555555555555444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.74  E-value=3.6e-07  Score=77.29  Aligned_cols=102  Identities=18%  Similarity=0.082  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHH
Q 011845           49 WQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIYQTLAL  122 (476)
Q Consensus        49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~  122 (476)
                      .+..|.-++..|+|..|...|...++..|++   +.+++.||.+++.+|++++|...|..+.+..|++   ++.++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            4445555555555555555555555555543   2455555555555555555555555555544332   345555555


Q ss_pred             HHHHhccHHHHHHHHHHHHhcCCCchhH
Q 011845          123 LEAKANRYEQARNLFRQATKCNPKSCAS  150 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~  150 (476)
                      +...+|+.++|...|+++++..|+...+
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            5555555555555555555555554433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.73  E-value=3.8e-06  Score=66.14  Aligned_cols=146  Identities=14%  Similarity=0.017  Sum_probs=94.3

Q ss_pred             cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ-ASPKNRFAWHVWGIFEANMGFIDKGKKLLKI  207 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  207 (476)
                      +++....-..+.+...|. ..-.+.++..+...|++.+|...|++++. +...++..+..++...+..+++..|...+++
T Consensus        71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~  149 (251)
T COG4700          71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED  149 (251)
T ss_pred             ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            333333334444444443 23455667777777777777777777665 4456666777777777777777777777777


Q ss_pred             HHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845          208 GHAVNPR--DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERA  276 (476)
Q Consensus       208 ~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (476)
                      ..+.+|.  .+.....+|..+...|++.+|...|+.++...|+ +......+..+..+|+..+|..-+...
T Consensus       150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            7776663  3556667777777777777777777777777665 356666677777777666665544443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.72  E-value=6.9e-07  Score=68.14  Aligned_cols=68  Identities=16%  Similarity=0.006  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN  113 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (476)
                      +..++.-|...++.|+|.+|++.|+.+....|..   ..+.+.++.+|+..+++++|+..+++.++++|.+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h   80 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH   80 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            3344444444444555555555555444444332   2344444445555555555555555555444433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.72  E-value=9.9e-08  Score=65.85  Aligned_cols=60  Identities=22%  Similarity=0.355  Sum_probs=26.1

Q ss_pred             HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845          123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR  182 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  182 (476)
                      +|...+++++|+.++++++..+|+++..+..+|.++...|++++|+..++++++..|+++
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            334444444444444444444444444444444444444444444444444444444433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.71  E-value=7.4e-07  Score=79.14  Aligned_cols=138  Identities=20%  Similarity=0.319  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 011845          184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK-YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK  262 (476)
Q Consensus       184 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (476)
                      +|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            566666777777777777777777776555566777777777666 4455558888888888778777778777777777


Q ss_pred             cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH
Q 011845          263 EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY  321 (476)
Q Consensus       263 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  321 (476)
                      .|+.+.|..+|++++..-|.......+|..+.......|+.+....+.+++.+..|++.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            88888888888888777665542344566667777777888888888888777777643

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.71  E-value=9.5e-08  Score=65.95  Aligned_cols=62  Identities=19%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH
Q 011845           89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS  150 (476)
Q Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  150 (476)
                      ++...+++++|++++++++..+|.++..+...|.++...|++.+|+..++++++..|+++.+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            44444455555555555555555544455555555555555555555555555544444433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=4.2e-07  Score=72.22  Aligned_cols=114  Identities=12%  Similarity=0.065  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-----HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI-----AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL  122 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~  122 (476)
                      -+-.-|.-++..|+|++|..-|..++...|..+     ..+.+.|.++++++.++.|+..+.+++++.|.+..++...+.
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe  176 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE  176 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence            344457777888999999999999988877643     345578888899999999999999999999988888888899


Q ss_pred             HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845          123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      +|.+...+++|+.-|.++++.+|....+.-..+++--..
T Consensus       177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            999999999999999999999988777766666554333

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=6.2e-05  Score=74.27  Aligned_cols=192  Identities=18%  Similarity=0.103  Sum_probs=92.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHH
Q 011845           18 GKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIK   97 (476)
Q Consensus        18 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~   97 (476)
                      |.+....+-|++|..+|++-     .-+..+...   +....+..+.|.++.+++     +.+..|..+|.+..+.|...
T Consensus      1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHh-----cccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence            44445555555555555543     112222111   112334445555544443     33556666666666666666


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 011845           98 KARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA  177 (476)
Q Consensus        98 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  177 (476)
                      +|++.|-++     +++..+.....+..+.|.|++-+.++.-+.+... .+.+-..+...|.+.++..+-.+.+     .
T Consensus      1122 dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~ 1190 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----A 1190 (1666)
T ss_pred             HHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----c
Confidence            666666554     4555566666666666666666666665554422 1222233334444444444332221     1


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845          178 SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA  242 (476)
Q Consensus       178 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  242 (476)
                      .|+... .-..|.-++..|.|+.|.-+|..        ..-|..++..+...|+|+.|...-+++
T Consensus      1191 gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1191 GPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             CCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            233322 23344445555555555554432        233444555555555555555554443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.68  E-value=4.9e-07  Score=71.85  Aligned_cols=107  Identities=16%  Similarity=0.174  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH-----HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 011845           83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNE-----YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM  157 (476)
Q Consensus        83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  157 (476)
                      +-.-|.-++..|+|++|..-|..++...|..+     .++.+.|.++.+++.++.|+.-+.++++++|.+..++...|.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            44556677778888888888888888877543     3566777778888888888888888888888887788888888


Q ss_pred             HHHhccHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 011845          158 EMQQENNLAARQLFERAVQASPKNRFAWHVWG  189 (476)
Q Consensus       158 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  189 (476)
                      |.+...+++|+.-|+++++.+|....+....+
T Consensus       178 yek~ek~eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            88888888888888888888887655544433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.66  E-value=1.9e-06  Score=76.50  Aligned_cols=133  Identities=22%  Similarity=0.369  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845          116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ-QENNLAARQLFERAVQASPKNRFAWHVWGIFEAN  194 (476)
Q Consensus       116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  194 (476)
                      +|..+.....+.+..+.|..+|.++++..+....+|...|.+... .++.+.|..+|+.+++..|.+...|..+...+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            344455555555555555555555554444445555555555444 2333335555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845          195 MGFIDKGKKLLKIGHAVNPRDP---VLLQSLALLEYKYSTANLARKLFRRASEIDPR  248 (476)
Q Consensus       195 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  248 (476)
                      .++.+.|..+|++++..-+...   .+|..........|+.+....+.+++.+..|+
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            5555555555555555444332   34444444455555555555555555444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.65  E-value=6.2e-05  Score=71.81  Aligned_cols=49  Identities=20%  Similarity=0.194  Sum_probs=37.2

Q ss_pred             HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845           22 SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDAS   72 (476)
Q Consensus        22 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~   72 (476)
                      ...|+|+.|...++.. ... |+....|..++.+....|+.--|..+|..+
T Consensus       455 id~~df~ra~afles~-~~~-~da~amw~~laelale~~nl~iaercfaai  503 (1636)
T KOG3616|consen  455 IDDGDFDRATAFLESL-EMG-PDAEAMWIRLAELALEAGNLFIAERCFAAI  503 (1636)
T ss_pred             cccCchHHHHHHHHhh-ccC-ccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            4578999998888765 555 677778888888888888877777776643

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=0.00016  Score=60.51  Aligned_cols=227  Identities=11%  Similarity=0.078  Sum_probs=144.4

Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-------------------HHHHHHHHHHHHHhccHHHHHHHHHH
Q 011845           79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN-------------------EYIYQTLALLEAKANRYEQARNLFRQ  139 (476)
Q Consensus        79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~  139 (476)
                      ....|...-.++.+...+++|..-+...-.++..+                   .......|.+....|+..+.+.-+..
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~  147 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK  147 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            34566666666777777777766665554443211                   11223345555556666655554444


Q ss_pred             HHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH
Q 011845          140 ATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN-PRDPVL  218 (476)
Q Consensus       140 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  218 (476)
                      ....-       ..+..........+..+..+++-+.      .+.+.++.++.-.|+|.-....+.+.++.+ |.++..
T Consensus       148 L~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L  214 (366)
T KOG2796|consen  148 LKTVV-------SKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL  214 (366)
T ss_pred             HHHHH-------HHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence            32211       1111222222333445555555332      456677778888888888888888888877 566777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845          219 LQSLALLEYKYSTANLARKLFRRASEID------PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA  292 (476)
Q Consensus       219 ~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  292 (476)
                      ...+|.+..+.|+.+.|..+|+..-+..      .....+..+.+.++.-.+++..|...|.+++..+|.++..   ..+
T Consensus       215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a---~Nn  291 (366)
T KOG2796|consen  215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA---NNN  291 (366)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh---hch
Confidence            8888888888888888888888543321      2233455667777777788888888888888888777544   456


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhCCCcH
Q 011845          293 WGVLEQRVGNLSAARRLFRSSLNINSQSY  321 (476)
Q Consensus       293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~  321 (476)
                      -+.|..-.|+...|++..+.+++..|...
T Consensus       292 KALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  292 KALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            67777788888888888888888877654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.58  E-value=4.2e-05  Score=72.91  Aligned_cols=295  Identities=15%  Similarity=0.060  Sum_probs=128.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845           52 WAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE  131 (476)
Q Consensus        52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  131 (476)
                      .|.-+...|+++.|+..|-.+-        .............+|.+|+.+++....... ....|-.++.-|...|+++
T Consensus       712 wg~hl~~~~q~daainhfiea~--------~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe  782 (1636)
T KOG3616|consen  712 WGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFE  782 (1636)
T ss_pred             HhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHH
Confidence            3444445555555555544331        111122223334455555555544332211 1223344555566666666


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845          132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN-RFAWHVWGIFEANMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  210 (476)
                      -|.++|.++-        ....-..+|.+.|++++|.++-++..  .|.. ...|...+.-+...|++.+|.++|-..- 
T Consensus       783 ~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-  851 (1636)
T KOG3616|consen  783 IAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-  851 (1636)
T ss_pred             HHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence            6666655431        11222344555666666655544432  2222 2334444555555566655555442211 


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHH
Q 011845          211 VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH-QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARC  289 (476)
Q Consensus       211 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  289 (476)
                       .|+      .-...|-+.|.++..+.+.++-   .|+. .+....+|.-+...|+...|...|-++-...         
T Consensus       852 -~p~------~aiqmydk~~~~ddmirlv~k~---h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k---------  912 (1636)
T KOG3616|consen  852 -EPD------KAIQMYDKHGLDDDMIRLVEKH---HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK---------  912 (1636)
T ss_pred             -Cch------HHHHHHHhhCcchHHHHHHHHh---ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH---------
Confidence             111      0112233333333333333221   2221 2455566777777777777776665543211         


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHH--------------HHhhCCCcH-HHHHHH------HHHHHHcCChHHHHHHHHHHH
Q 011845          290 LQAWGVLEQRVGNLSAARRLFRS--------------SLNINSQSY-ITWMTW------AQLEEDQGNSVRAEEIRNLYF  348 (476)
Q Consensus       290 ~~~l~~~~~~~g~~~~A~~~~~~--------------al~~~p~~~-~~~~~l------~~~~~~~g~~~~A~~~~~~~~  348 (476)
                        .-...|...+-+++|..+-+.              +-.+..+-. ..+...      ...-...+-++-|.++-+...
T Consensus       913 --aavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~  990 (1636)
T KOG3616|consen  913 --AAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA  990 (1636)
T ss_pred             --HHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh
Confidence              112222333333333222211              000000000 000000      111122233333333333333


Q ss_pred             h-hhhhhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845          349 Q-QRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK  387 (476)
Q Consensus       349 ~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  387 (476)
                      . ..+++...++..+...|++++|-+.|-.+++++.-|..
T Consensus       991 k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynit 1030 (1636)
T KOG3616|consen  991 KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT 1030 (1636)
T ss_pred             hccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch
Confidence            2 34456666777777788888888888888887765443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.58  E-value=1.2e-07  Score=66.34  Aligned_cols=67  Identities=24%  Similarity=0.365  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHcc----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          250 QPVWIAWGWMEWKEGNLDTARELYERALSI----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                      ..++.++|.+|...|++++|+.+|++++++    .++++....++.++|.++...|++++|++++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            456667777777777777777777777654    2233344566777777777777777777777777654

...

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.55  E-value=6.9e-06  Score=60.55  Aligned_cols=99  Identities=21%  Similarity=0.239  Sum_probs=68.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC-ChhHHHHHHHHHHHHH
Q 011845          220 QSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST-TESAARCLQAWGVLEQ  298 (476)
Q Consensus       220 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~l~~~~~  298 (476)
                      -.-|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-.|+.++|++.+++++++..+ .......+...|.+|.
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            344566666777777777777777777777777777777777777777777777777776433 2333445666677777


Q ss_pred             HhCCHHHHHHHHHHHHhhCC
Q 011845          299 RVGNLSAARRLFRSSLNINS  318 (476)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~p  318 (476)
                      ..|+-+.|..-|+.+-++..
T Consensus       127 l~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HhCchHHHHHhHHHHHHhCC
Confidence            77777777777777666543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=0.00067  Score=61.93  Aligned_cols=340  Identities=14%  Similarity=0.125  Sum_probs=204.7

Q ss_pred             hhHHHHHHHHH-hcCCHHHHHHHHHHhhccCC--CC----ChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCcCcH---
Q 011845           12 RPYVALGKVLS-KQSKVAEARAIYAKGSQATQ--GE----NPYIWQCWAVLENKLG-NIGKARELFDASTVADKGHI---   80 (476)
Q Consensus        12 ~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~---   80 (476)
                      .....+|.+++ ...+++.|...++++.....  |.    .-++...++.+|.... .+..|...+.++++.....+   
T Consensus        47 rt~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~ws  126 (629)
T KOG2300|consen   47 RTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWS  126 (629)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhh
Confidence            44567776654 46889999999998875431  22    2345667788888777 78889999999987765544   


Q ss_pred             -HHHHHHHHHHHHhCCHHHHHHHHHHhhcc-----------------------CCCcHH---------------------
Q 011845           81 -AAWHGWAVLELRQGNIKKARQLLAKGLKF-----------------------CGGNEY---------------------  115 (476)
Q Consensus        81 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----------------------~p~~~~---------------------  115 (476)
                       ...+.++.++.-..++..|.+.+.-....                       .++..+                     
T Consensus       127 ckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~  206 (629)
T KOG2300|consen  127 CKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQ  206 (629)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHH
Confidence             44557788888888888887764322111                       010000                     


Q ss_pred             ------HHHHHH-HHHHHhccHHHHHHHHHHHH---hc-CCC-----------c-hh--HH---------HHHH--HHHH
Q 011845          116 ------IYQTLA-LLEAKANRYEQARNLFRQAT---KC-NPK-----------S-CA--SW---------IAWS--QMEM  159 (476)
Q Consensus       116 ------~~~~la-~~~~~~g~~~~A~~~~~~~~---~~-~p~-----------~-~~--~~---------~~la--~~~~  159 (476)
                            .+..+- ..|...|+...+...+++.-   .. .+.           + +.  .|         ..+.  .--.
T Consensus       207 ~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm  286 (629)
T KOG2300|consen  207 KEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSM  286 (629)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhh
Confidence                  011111 12223355544444444322   11 110           0 00  11         1111  1112


Q ss_pred             HhccHHHHHHHHHHHHHcCCC------cH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-------C
Q 011845          160 QQENNLAARQLFERAVQASPK------NR--------FAWHVWGIFEANMGFIDKGKKLLKIGHAVN---PR-------D  215 (476)
Q Consensus       160 ~~~~~~~A~~~~~~a~~~~~~------~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-------~  215 (476)
                      ..|-+++|.++-++++.....      ..        ..+..++.+-.-.|++.+|++.+..+.+..   |.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            346677777777777654211      11        223345556667799999988887776543   33       2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CH--HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh-------
Q 011845          216 PVLLQSLALLEYKYSTANLARKLFRRASEIDPR-HQ--PVWIAWGWMEWKEGNLDTARELYERALSIDSTTES-------  285 (476)
Q Consensus       216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------  285 (476)
                      +.++..+|......+.++.|...|..+.+.... +.  .+-.+++..|.+.|+-+.-.+.++..   .|.+..       
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHH
Confidence            345667777777888889999999988876543 22  23456888899887765554444433   343211       


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-c-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhh
Q 011845          286 AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ-S-----YITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV  354 (476)
Q Consensus       286 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  354 (476)
                      ...+++..|...+..+++.+|...+.+.++.... +     .-.+..++.+....|+..++.+...-..+....+
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi  518 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI  518 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence            1345666688888999999999999999887511 1     1245667788888899999888877776644433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=7.3e-05  Score=61.34  Aligned_cols=103  Identities=10%  Similarity=0.023  Sum_probs=59.7

Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH----HHH
Q 011845          221 SLALLEYKY-STANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA----ARC  289 (476)
Q Consensus       221 ~la~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~  289 (476)
                      .+|.+|... .++++|+.+|+++-+.....      -..+...+..-...++|.+|+..|++.....-++...    ...
T Consensus       118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy  197 (288)
T KOG1586|consen  118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY  197 (288)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence            455555443 56666666666665443221      1344445555566677777777777766554444322    233


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 011845          290 LQAWGVLEQRVGNLSAARRLFRSSLNINSQSYIT  323 (476)
Q Consensus       290 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  323 (476)
                      ++.-|.|+.-..+.-.+...+++-.+++|...+.
T Consensus       198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            4455666666677777777777777777765543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.53  E-value=1.2e-06  Score=79.76  Aligned_cols=69  Identities=14%  Similarity=0.082  Sum_probs=54.1

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845          211 VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV---WIAWGWMEWKEGNLDTARELYERALSI  279 (476)
Q Consensus       211 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~a~~~  279 (476)
                      .+|+++..++++|.++...|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456777788888888888888888888888888888877744   788888888888888888888888776

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=6e-05  Score=61.85  Aligned_cols=127  Identities=9%  Similarity=0.019  Sum_probs=81.2

Q ss_pred             ccHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q 011845          162 ENNLAARQLFERAVQASPKNR------FAWHVWGIFEANM-GFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYK  228 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~  228 (476)
                      +++++|+.++++++++..+-.      ..+..+|.+|... .++++|+.+|+++-+.....      ...+...+..-..
T Consensus        87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~  166 (288)
T KOG1586|consen   87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ  166 (288)
T ss_pred             cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence            356666666666655543322      2233556666554 67777777777776554332      2245566667777


Q ss_pred             cCCHHHHHHHHHHHhccCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHH
Q 011845          229 YSTANLARKLFRRASEIDPRHQ-------PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAAR  288 (476)
Q Consensus       229 ~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  288 (476)
                      .++|.+|+.+|++.....-++.       ..++.-|.+++-..+.-.+...+++..+++|......+
T Consensus       167 leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE  233 (288)
T KOG1586|consen  167 LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE  233 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence            7888888888888776554443       23445677777778888888888888888888766533

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=98.45  E-value=0.0013  Score=60.56  Aligned_cols=86  Identities=19%  Similarity=0.257  Sum_probs=64.8

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCcCcHH
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN-IGKARELFDASTVADKGHIA   81 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~   81 (476)
                      ++...+.|+..|........+.+.+.+--.+|.+++... |+++.+|..-|.-.+..+. .+.|..+|.++++.+|+++.
T Consensus        97 at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~  175 (568)
T KOG2396|consen   97 ATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPK  175 (568)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence            455667788888888777777777888888888888777 7888888877776666554 78888888888888888887


Q ss_pred             HHHHHHHH
Q 011845           82 AWHGWAVL   89 (476)
Q Consensus        82 ~~~~la~~   89 (476)
                      .|...-.+
T Consensus       176 Lw~eyfrm  183 (568)
T KOG2396|consen  176 LWKEYFRM  183 (568)
T ss_pred             HHHHHHHH
Confidence            77654443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.45  E-value=2.2e-05  Score=72.76  Aligned_cols=111  Identities=8%  Similarity=-0.057  Sum_probs=90.1

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN-PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      +++.+|.+...+..-+.....+|+..+|+.++..++...++.. -.+...+|.++.+.|...+|--++..++...|....
T Consensus       205 glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~  284 (886)
T KOG4507|consen  205 GLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTS  284 (886)
T ss_pred             hhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccc
Confidence            4566777766555555555668999999999999987764433 346788999999999999999999998887776667


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGN  113 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (476)
                      -++.++.++...+.+......|..+.+..|..
T Consensus       285 n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  285 NYYTLGNIYAMLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             cceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence            78899999999999999999999999888754

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.44  E-value=4.7e-06  Score=75.98  Aligned_cols=67  Identities=15%  Similarity=0.110  Sum_probs=32.4

Q ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHH---HHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845           77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYI---YQTLALLEAKANRYEQARNLFRQATKC  143 (476)
Q Consensus        77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~  143 (476)
                      |+++.+|+++|.+|...|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+..++++++.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4444444455555555555555555555555444444422   444444444444444444444444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.43  E-value=0.0013  Score=59.75  Aligned_cols=130  Identities=16%  Similarity=0.088  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845           13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENP-----YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA   87 (476)
Q Consensus        13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la   87 (476)
                      .+...|-++-.++++.+|..+|.++.+.. ..++     +++.....-.+-.++.+.-...+-..-+..|..+......|
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~   86 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA   86 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            34556788889999999999999987654 2332     22222222223345555555555555555666666666777


Q ss_pred             HHHHHhCCHHHHHHHHHHhhccCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845           88 VLELRQGNIKKARQLLAKGLKFCGGN---------------EYIYQTLALLEAKANRYEQARNLFRQATKC  143 (476)
Q Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  143 (476)
                      ...++.+.+.+|++.+......-...               ...-...+.++...|++.+++..+++.+..
T Consensus        87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            77777888887777776554431110               111234566777778888877777776654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=0.0001  Score=63.89  Aligned_cols=158  Identities=9%  Similarity=0.078  Sum_probs=119.2

Q ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHc
Q 011845          120 LALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA-SPKN---RFAWHVWGIFEANM  195 (476)
Q Consensus       120 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~  195 (476)
                      -+.+....|++.+|....++.++..|.+.-++..--.+++..|+...-...+++++.. +++-   ..+.-.++..+...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            3455566788888888888888888888887777777888888888888888888766 4443   34455667777888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCChhHHHH
Q 011845          196 GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH----QPVWIAWGWMEWKEGNLDTARE  271 (476)
Q Consensus       196 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~  271 (476)
                      |-|++|.+.-++++++++.+..+....+.++...|++.++.+++.+.-..-...    ..-|...+.++...+.|+.|++
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            888889888888888888888888888888888888888888877654332211    1234456777777888888888


Q ss_pred             HHHHHH
Q 011845          272 LYERAL  277 (476)
Q Consensus       272 ~~~~a~  277 (476)
                      +|.+-+
T Consensus       269 IyD~ei  274 (491)
T KOG2610|consen  269 IYDREI  274 (491)
T ss_pred             HHHHHH
Confidence            887654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=0.0001  Score=63.80  Aligned_cols=161  Identities=11%  Similarity=-0.040  Sum_probs=132.3

Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH---HHHHHHHHHHHHc
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV-NPRDP---VLLQSLALLEYKY  229 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~la~~~~~~  229 (476)
                      -+.+....|+..+|...+++.++..|.+.-++..--..++..|+...-...+++.+.. +++-|   .+.-.++-.+...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            3456667899999999999999999999888888888899999999999999998876 66553   3455677778899


Q ss_pred             CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh-HHHHHHHHHHHHHHhCCHHHHHH
Q 011845          230 STANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES-AARCLQAWGVLEQRVGNLSAARR  308 (476)
Q Consensus       230 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~  308 (476)
                      |-+++|.+.-++++++++.+.-+....+.++...|++.++.+...+.-..-..... +...|-..+.++...+.++.|.+
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            99999999999999999999999999999999999999999998876544322211 12234456888899999999999


Q ss_pred             HHHHHH
Q 011845          309 LFRSSL  314 (476)
Q Consensus       309 ~~~~al  314 (476)
                      +|.+-+
T Consensus       269 IyD~ei  274 (491)
T KOG2610|consen  269 IYDREI  274 (491)
T ss_pred             HHHHHH
Confidence            998654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.35  E-value=2.3e-05  Score=57.82  Aligned_cols=94  Identities=20%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHH
Q 011845           85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS----CASWIAWSQMEMQ  160 (476)
Q Consensus        85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~  160 (476)
                      ..|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+.-+++++++..+.    ..++...|.+|..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555555555555555555555555555554222    1244455555555


Q ss_pred             hccHHHHHHHHHHHHHcC
Q 011845          161 QENNLAARQLFERAVQAS  178 (476)
Q Consensus       161 ~~~~~~A~~~~~~a~~~~  178 (476)
                      .|+.+.|..-|+.+-++.
T Consensus       128 ~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  128 LGNDDAARADFEAAAQLG  145 (175)
T ss_pred             hCchHHHHHhHHHHHHhC
Confidence            555555555555554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.33  E-value=1.3e-06  Score=61.05  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHH
Q 011845          117 YQTLALLEAKANRYEQARNLFRQAT  141 (476)
Q Consensus       117 ~~~la~~~~~~g~~~~A~~~~~~~~  141 (476)
                      +..+|.++...|++++|++++++++
T Consensus        49 ~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen   49 LNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3334444444444444444444433

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.32  E-value=9.3e-06  Score=64.11  Aligned_cols=65  Identities=14%  Similarity=0.095  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCH----------HHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           62 IGKARELFDASTVADKGHIAAWHGWAVLELRQGNI----------KKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        62 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      |+.|.+.++.....+|.+.+.++..|.++..+.++          ++|+.-|++++.++|+...++..+|.+|..
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts   81 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            45566666666666677776666666666554332          233444444444444444444444444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00035  Score=57.94  Aligned_cols=117  Identities=11%  Similarity=0.086  Sum_probs=67.6

Q ss_pred             HHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccC---CCChhHHHHHHHHHHHH
Q 011845          227 YKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSID---STTESAARCLQAWGVLE  297 (476)
Q Consensus       227 ~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~l~~~~  297 (476)
                      ...-++++|+++|++++.+...+      .+.+...+.++.+...+++|...+.+-....   .........+.....++
T Consensus       121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~  200 (308)
T KOG1585|consen  121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY  200 (308)
T ss_pred             hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence            34456677777777766553322      2344556677777777877777666543321   11111122344444556


Q ss_pred             HHhCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 011845          298 QRVGNLSAARRLFRSSLNI----NSQSYITWMTWAQLEEDQGNSVRAEEIR  344 (476)
Q Consensus       298 ~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~  344 (476)
                      ....++..|..+|+..-++    .|++..+..+|...| ..|+.++...++
T Consensus       201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            6666888888888876654    345555666666555 456766665553

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=0.0055  Score=61.28  Aligned_cols=225  Identities=13%  Similarity=0.100  Sum_probs=138.3

Q ss_pred             hcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHH
Q 011845           23 KQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQL  102 (476)
Q Consensus        23 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~  102 (476)
                      ..+..+.|.++-++.      +.+.+|..+|.+..+.|...+|++.|-++     +++..+........+.|.|++-+++
T Consensus      1087 ~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred             HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence            356777777777665      45688888888888888888888888765     5667777888888888888888888


Q ss_pred             HHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845          103 LAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR  182 (476)
Q Consensus       103 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  182 (476)
                      +..+.+.. ..+.+-..+...|.+.++..+-.+.+     ..|+.. -....|.-++..|.|+.|.-+|...        
T Consensus      1156 L~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~v-------- 1220 (1666)
T KOG0985|consen 1156 LLMARKKV-REPYIDSELIFAYAKTNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSNV-------- 1220 (1666)
T ss_pred             HHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHHh--------
Confidence            87776543 22334445556666667666544432     234433 3344566666677777776666542        


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------C----CCHHHHHHHHHHHHHcCCHHHHHH
Q 011845          183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVN---------------------P----RDPVLLQSLALLEYKYSTANLARK  237 (476)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------------~----~~~~~~~~la~~~~~~~~~~~A~~  237 (476)
                      .-|..++..+..+|+|..|...-+++-...                     .    -+.+-+-.+...|...|-+++-+.
T Consensus      1221 SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHH
Confidence            345566666777777777766665542110                     0    012233445555566666666666


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 011845          238 LFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYE  274 (476)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  274 (476)
                      +++.++.+...+-..+..+|.+|.+ -++++-.+.++
T Consensus      1301 l~Ea~LGLERAHMgmfTELaiLYsk-ykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1301 LLEAGLGLERAHMGMFTELAILYSK-YKPEKMMEHLK 1336 (1666)
T ss_pred             HHHhhhchhHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence            6666666555555555555555543 23444444443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.30  E-value=1.8e-05  Score=62.52  Aligned_cols=87  Identities=17%  Similarity=0.107  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc----------cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc--
Q 011845           96 IKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN----------RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN--  163 (476)
Q Consensus        96 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--  163 (476)
                      ++.|.+.++.....+|.+.+.+++-|..+..+.          -+++|+.-|++++.++|+..+++..+|.+|...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            567888888888888888888888777776653          35567777778888888888888888887776553  


Q ss_pred             ---------HHHHHHHHHHHHHcCCCcH
Q 011845          164 ---------NLAARQLFERAVQASPKNR  182 (476)
Q Consensus       164 ---------~~~A~~~~~~a~~~~~~~~  182 (476)
                               |++|..+|+++...+|++.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence                     4556666666666666654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.29  E-value=0.0015  Score=62.53  Aligned_cols=177  Identities=19%  Similarity=0.086  Sum_probs=124.0

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHH------HHHHHHHHH----HcCCHHHHHHH
Q 011845          170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD-PVL------LQSLALLEY----KYSTANLARKL  238 (476)
Q Consensus       170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~------~~~la~~~~----~~~~~~~A~~~  238 (476)
                      .|.-++.+-|..   ...+..+..-.|+-+.++..+.++.+...-. +.+      ++.....+.    .....+.|.++
T Consensus       179 ~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~l  255 (468)
T PF10300_consen  179 LFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEEL  255 (468)
T ss_pred             HHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence            444455555533   2344445556789999999999887632211 111      111111111    24566889999


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845          239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA-ARCLQAWGVLEQRVGNLSAARRLFRSSLNIN  317 (476)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  317 (476)
                      +....+..|+..-..+..|.++...|+.++|++.|++++.....-+.. ..+++.++.++.-.+++++|..+|.+..+.+
T Consensus       256 L~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  256 LEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence            999999999998888999999999999999999999988643333222 3467788999999999999999999999876


Q ss_pred             CCcH-HHHHHHHHHHHHcCCh-------HHHHHHHHHHHh
Q 011845          318 SQSY-ITWMTWAQLEEDQGNS-------VRAEEIRNLYFQ  349 (476)
Q Consensus       318 p~~~-~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~  349 (476)
                      .-+. ...+..|-|+...|+.       ++|.+++.++-.
T Consensus       336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            5544 3456778888899988       666666555543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.28  E-value=0.00092  Score=62.30  Aligned_cols=188  Identities=9%  Similarity=0.018  Sum_probs=95.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--------cCcHHHHHHHHH
Q 011845           17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVAD--------KGHIAAWHGWAV   88 (476)
Q Consensus        17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~la~   88 (476)
                      .+.+..+.|+|+.-.......    +...+...+..+......|+++++....+++...-        +......+..-.
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~----~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~   79 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQS----NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV   79 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhc----cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            356778889998833333333    23344566666666678899999888888875421        111111111111


Q ss_pred             HHHHhCCHHHHHHHHHHhhccCCCc----HHHHHHHHHHH-HHhccHHHHHHHHHHHHh----cCCCchhHHHHHHHHHH
Q 011845           89 LELRQGNIKKARQLLAKGLKFCGGN----EYIYQTLALLE-AKANRYEQARNLFRQATK----CNPKSCASWIAWSQMEM  159 (476)
Q Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~-~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~la~~~~  159 (476)
                      .+......+++..+....... +..    ...|...-... -....++.-+ .++..+-    ........|...+.+..
T Consensus        80 ~lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~~~~~~~~~~il-~~R~~~l~~~~~~~~~~~~~l~~a~~aR  157 (352)
T PF02259_consen   80 KLQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNMQDDFSVWEPIL-SLRRLVLSLILLPEELAETWLKFAKLAR  157 (352)
T ss_pred             HHhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            222233334444333221110 000    00111100000 0000011111 1111111    12344556777777788


Q ss_pred             HhccHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845          160 QQENNLAARQLFERAVQASP----KNRFAWHVWGIFEANMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       160 ~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  210 (476)
                      +.|.++.|...+.++....+    ..+.+.+..+.++...|+..+|+..++..+.
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888888777777776542    1356667777777777887788777777666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.26  E-value=0.00093  Score=62.24  Aligned_cols=304  Identities=14%  Similarity=0.109  Sum_probs=150.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC--------CcHHHHHHHHHH
Q 011845           52 WAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG--------GNEYIYQTLALL  123 (476)
Q Consensus        52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~  123 (476)
                      .+.+..++|+++.-.......-   .+.+...+..+......++++++...++++...--        ......+.....
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~---~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~   80 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSN---EDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK   80 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhcc---CCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            3567788899988433333322   22335566666666688999999888888765421        111111122222


Q ss_pred             HHHhccHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHhccHH--HHHHHHHHHHHc----CCCcHHHHHHHHHHHH
Q 011845          124 EAKANRYEQARNLFRQATKCNPKS----CASWIAWSQMEMQQENNL--AARQLFERAVQA----SPKNRFAWHVWGIFEA  193 (476)
Q Consensus       124 ~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~----~~~~~~~~~~l~~~~~  193 (476)
                      +....+.+++..+....... +..    ...|...-...  ..+++  +-+-.++..+-.    .......|..++.+..
T Consensus        81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR  157 (352)
T PF02259_consen   81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR  157 (352)
T ss_pred             HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            22333444444443222111 000    11111111111  11111  111112222211    2234455666666666


Q ss_pred             HcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-C--HHHHHHHHHHHHHcCCh
Q 011845          194 NMGFIDKGKKLLKIGHAVNP----RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR-H--QPVWIAWGWMEWKEGNL  266 (476)
Q Consensus       194 ~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~  266 (476)
                      +.|.++.|...+.++....+    ..+.+....+.++...|+..+|+..++..+..... .  ......+......    
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----  233 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE----  233 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc----
Confidence            66666666666666655431    13455566666666666666666666665552111 0  0000000000000    


Q ss_pred             hHHHHHHHHHHc---cCCCChhHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCh
Q 011845          267 DTARELYERALS---IDSTTESAARCLQAWGVLEQRV------GNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNS  337 (476)
Q Consensus       267 ~~A~~~~~~a~~---~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  337 (476)
                           .+.....   ..........++..+|......      +..+++...|+++++.+|+...+|..+|..+...-+.
T Consensus       234 -----~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~  308 (352)
T PF02259_consen  234 -----SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES  308 (352)
T ss_pred             -----ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence                 0000000   0011122345667778877777      8999999999999999999999999999888765332


Q ss_pred             HHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhccccC
Q 011845          338 VRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKS  384 (476)
Q Consensus       338 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  384 (476)
                      .....--             ... -....-...|+..|-+++...++
T Consensus       309 ~~~~~~~-------------~~~-~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  309 DPREKEE-------------SSQ-EDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hhhcccc-------------cch-hHHHHHHHHHHHHHHHHHhhCCC
Confidence            2211000             000 00111234577888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.25  E-value=0.00037  Score=63.11  Aligned_cols=168  Identities=13%  Similarity=-0.000  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHHHHHHH
Q 011845          152 IAWSQMEMQQENNLAARQLFERAVQA----SPKNRFAWHVWGIFEAN---MGFIDKGKKLLKI-GHAVNPRDPVLLQSLA  223 (476)
Q Consensus       152 ~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~~~~la  223 (476)
                      ..+-..|....+|+.-+++.+..-..    .++.+.+...+|.++.+   .|+.++|+.++.. .....+.+++++..+|
T Consensus       145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G  224 (374)
T PF13281_consen  145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG  224 (374)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            33344444444444444444443333    22233344444444444   4445555555444 2223334444444444


Q ss_pred             HHHHH---------cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--------cc-CCCChh
Q 011845          224 LLEYK---------YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL--------SI-DSTTES  285 (476)
Q Consensus       224 ~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~--------~~-~~~~~~  285 (476)
                      .+|..         ....++|+..|.++.+..|+. ..-.+++.++...|...+...-+++..        +. .-+...
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~  303 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ  303 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence            44432         112566777777777766543 333344444444443222221111111        00 000111


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 011845          286 AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS  320 (476)
Q Consensus       286 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  320 (476)
                      .+..+..++.+..-.|++++|.+++++++...|..
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            12233455666666777777777777777766543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.23  E-value=0.00036  Score=64.17  Aligned_cols=121  Identities=16%  Similarity=0.096  Sum_probs=66.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-----------------
Q 011845           51 CWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN-----------------  113 (476)
Q Consensus        51 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----------------  113 (476)
                      .+..-..+..+...-++...++++++|+.+.+|..++.-  ......+|..+|+++++.....                 
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            344445567788888888888888888888888777653  2334566777777766532110                 


Q ss_pred             --------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845          114 --------EYIYQTLALLEAKANRYEQARNLFRQATKCNPK--SCASWIAWSQMEMQQENNLAARQLFER  173 (476)
Q Consensus       114 --------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~  173 (476)
                              ..+...+|.+..+.|+.++|++.++.+++..|.  +..++.++..++...+.+.++..++.+
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                    122334444444445555555555544444432  223444444444444444444444444

The molecular function of this protein is uncertain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.00088  Score=55.61  Aligned_cols=202  Identities=16%  Similarity=0.139  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE------YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAW  154 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  154 (476)
                      ..+..-+.+|...+++++|..++.++.+-..++.      ..+-..+.+......+.++..+|+++.             
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs-------------   98 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS-------------   98 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Confidence            3444556666666677777776666664332221      122233333333344444444444443             


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q 011845          155 SQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYK  228 (476)
Q Consensus       155 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~  228 (476)
                       .+|...|..+.|...++++-+               .....++++|+++|++++.+...+      .+.+...+.++.+
T Consensus        99 -~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr  162 (308)
T KOG1585|consen   99 -ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR  162 (308)
T ss_pred             -HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence             334444444444444444332               223445666777777766554322      2244556677777


Q ss_pred             cCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC-ChhHHHHHHHHHHHHHHhC
Q 011845          229 YSTANLARKLFRRASEI------DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST-TESAARCLQAWGVLEQRVG  301 (476)
Q Consensus       229 ~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~l~~~~~~~g  301 (476)
                      ...+.+|-..+.+-...      .++....+.....++....+|..|..+++...++..- .+.-.+.+.++-.. +..|
T Consensus       163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~g  241 (308)
T KOG1585|consen  163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEG  241 (308)
T ss_pred             hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccC
Confidence            78887777666653322      2333345556666667777888888888887665221 11112334444333 3457


Q ss_pred             CHHHHHHHHHH
Q 011845          302 NLSAARRLFRS  312 (476)
Q Consensus       302 ~~~~A~~~~~~  312 (476)
                      +.++....+..
T Consensus       242 D~E~~~kvl~s  252 (308)
T KOG1585|consen  242 DIEEIKKVLSS  252 (308)
T ss_pred             CHHHHHHHHcC
Confidence            77776665543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.22  E-value=3.6e-06  Score=50.99  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA   87 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la   87 (476)
                      ++..+|..|...|++++|+..|+++++.+|+++.+|..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4445555555555555555555555555555555555444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.18  E-value=0.00018  Score=66.11  Aligned_cols=188  Identities=17%  Similarity=0.137  Sum_probs=98.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH
Q 011845           85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN  164 (476)
Q Consensus        85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~  164 (476)
                      .+..-..+..+...-++.-.++++++|+.+.++..++.-.  .....+|..+|+++++......    .........|..
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~  246 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHF  246 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccch
Confidence            4444556778888888889999999998888888777532  3346677777777776532110    000000011110


Q ss_pred             HHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          165 LAARQLFERAVQASPKN--RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--DPVLLQSLALLEYKYSTANLARKLFR  240 (476)
Q Consensus       165 ~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~  240 (476)
                      -+       .......+  ..+...++.+..+.|+.++|++.++.+++..|.  +..++.++..++...+.+.++..++.
T Consensus       247 ~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~  319 (539)
T PF04184_consen  247 WE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA  319 (539)
T ss_pred             hh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence            00       00000111  223345566666666666666666666655543  23355666666666666666666665


Q ss_pred             HHhcc-CCCCHHHHHHHHHHHHH-cCC---------------hhHHHHHHHHHHccCCCChh
Q 011845          241 RASEI-DPRHQPVWIAWGWMEWK-EGN---------------LDTARELYERALSIDSTTES  285 (476)
Q Consensus       241 ~~~~~-~~~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~a~~~~~~~~~  285 (476)
                      +.-++ -|.+....+.-+.+-.+ .++               -..|++.+.+|++.+|..+.
T Consensus       320 kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  320 KYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             HhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence            54332 23444433333332221 111               12355666777776666543

The molecular function of this protein is uncertain.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.17  E-value=0.011  Score=59.29  Aligned_cols=312  Identities=13%  Similarity=0.087  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHhhccCCC---CChHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcCcC--cH----HHHHHHHHHHHHhCCH
Q 011845           27 VAEARAIYAKGSQATQG---ENPYIWQCWAVLEN-KLGNIGKARELFDASTVADKG--HI----AAWHGWAVLELRQGNI   96 (476)
Q Consensus        27 ~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~--~~----~~~~~la~~~~~~~~~   96 (476)
                      ...|+.+++-+++..++   ....+.+.+|.++. ...+++.|..++++++.+...  ..    ...+.++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            34567778777743311   23457788888876 788999999999999765532  22    3344678888888877


Q ss_pred             HHHHHHHHHhhccCCC---c-HHHHHHH--HHHHHHhccHHHHHHHHHHHHhcC--CCchhH----HHHHHHHHHHhccH
Q 011845           97 KKARQLLAKGLKFCGG---N-EYIYQTL--ALLEAKANRYEQARNLFRQATKCN--PKSCAS----WIAWSQMEMQQENN  164 (476)
Q Consensus        97 ~~A~~~~~~~~~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~----~~~la~~~~~~~~~  164 (476)
                      . |...+++.++....   . ....+.+  ...+...+++..|++.++......  +.++.+    ....+.+....+..
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~  195 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP  195 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            7 99999998876543   2 2222222  233333479999999999988775  344433    23335556667778


Q ss_pred             HHHHHHHHHHHHcC------C----CcHHHHHHHHH--HHHHcCCHHHHHHHHHHHH---h---cCC-------C-----
Q 011845          165 LAARQLFERAVQAS------P----KNRFAWHVWGI--FEANMGFIDKGKKLLKIGH---A---VNP-------R-----  214 (476)
Q Consensus       165 ~~A~~~~~~a~~~~------~----~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~---~---~~~-------~-----  214 (476)
                      +++++.++++....      |    ....+|..+..  +....|+++.+...+++.-   .   ..+       +     
T Consensus       196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l  275 (608)
T PF10345_consen  196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL  275 (608)
T ss_pred             hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence            88888887774321      1    12344444443  3456677667666554432   1   111       0     


Q ss_pred             ----------C-HH-------------HHHHHHHHHHHcCCHHHHHHHHHHHhccC-------C---CCH----------
Q 011845          215 ----------D-PV-------------LLQSLALLEYKYSTANLARKLFRRASEID-------P---RHQ----------  250 (476)
Q Consensus       215 ----------~-~~-------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~---~~~----------  250 (476)
                                . +.             ++..-|......+..++|.++++++++.-       +   ..+          
T Consensus       276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~  355 (608)
T PF10345_consen  276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW  355 (608)
T ss_pred             ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence                      0 00             22333455556676668877777776431       1   100          


Q ss_pred             ------HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC------hhHHHHHHHHHHHHHHhCCHHHHHHHHH-------
Q 011845          251 ------PVWIAWGWMEWKEGNLDTARELYERALSIDSTT------ESAARCLQAWGVLEQRVGNLSAARRLFR-------  311 (476)
Q Consensus       251 ------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------  311 (476)
                            .+.+..+.+..-.|++..|...++.+.+.....      .....+++..|..+...|+.+.|..+|.       
T Consensus       356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~  435 (608)
T PF10345_consen  356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC  435 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence                  133456777778899999999998877653222      1224456777999999999999999998       


Q ss_pred             -HHHhhCCCcH---HHHHHHHHHHHHcCChHH
Q 011845          312 -SSLNINSQSY---ITWMTWAQLEEDQGNSVR  339 (476)
Q Consensus       312 -~al~~~p~~~---~~~~~l~~~~~~~g~~~~  339 (476)
                       .+....+.+.   -+..++..++...+....
T Consensus       436 ~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~  467 (608)
T PF10345_consen  436 EAANRKSKFRELYILAALNLAIILQYESSRDD  467 (608)
T ss_pred             hhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence             3334444433   244566677766665333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.16  E-value=6e-06  Score=50.01  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=13.3

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHH
Q 011845          152 IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWH  186 (476)
Q Consensus       152 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  186 (476)
                      ..+|..|...|++++|+..|+++++.+|+++.+|.
T Consensus         5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~   39 (44)
T PF13428_consen    5 LALARAYRRLGQPDEAERLLRRALALDPDDPEAWR   39 (44)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            33333333333333333333333333333333333

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.15  E-value=0.0018  Score=58.79  Aligned_cols=170  Identities=9%  Similarity=-0.051  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhcc----CCCcHHHHHHHHHHHHH---hccHHHHHHHHHH-HHhcCCCchhHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKF----CGGNEYIYQTLALLEAK---ANRYEQARNLFRQ-ATKCNPKSCASWI  152 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~~~~~p~~~~~~~  152 (476)
                      +....+-.+|....+|+.-+++.+.+-..    .+..+.+...+|.++.+   .|+.++|+..+.. .....+.+++++.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            34444555555555555555555555444    23344455555555555   5555666655555 3333344555555


Q ss_pred             HHHHHHHHh---------ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------hc
Q 011845          153 AWSQMEMQQ---------ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGH------------AV  211 (476)
Q Consensus       153 ~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~  211 (476)
                      .+|.+|...         ...++|+..|.++.+.+|+. ..-.+++.++...|...+....+++..            ..
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence            555554431         23566777777777666433 223344444444443222221111111            11


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 011845          212 NPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP  251 (476)
Q Consensus       212 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  251 (476)
                      .-.+...+-.++.+..-.|++++|++.+++++...|....
T Consensus       301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence            1223445566777778888888888888888888765543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.15  E-value=0.012  Score=59.00  Aligned_cols=373  Identities=13%  Similarity=0.087  Sum_probs=221.4

Q ss_pred             CchhHHHHHHHHH-hcCCHHHHHHHHHHhhccCCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC---cH
Q 011845           10 DGRPYVALGKVLS-KQSKVAEARAIYAKGSQATQGEN-----PYIWQCWAVLENKLGNIGKARELFDASTVADKG---HI   80 (476)
Q Consensus        10 ~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~   80 (476)
                      .+.+++.+|.+++ ...+++.|..++++++......+     ....+.++.++.+.+... |...+++.++....   ..
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~  136 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA  136 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence            3567889999987 68999999999999987653221     223456688888888777 99999998865433   22


Q ss_pred             HHHH-HH--HHHHHHhCCHHHHHHHHHHhhccC--CCcHHHH----HHHHHHHHHhccHHHHHHHHHHHHhcCC------
Q 011845           81 AAWH-GW--AVLELRQGNIKKARQLLAKGLKFC--GGNEYIY----QTLALLEAKANRYEQARNLFRQATKCNP------  145 (476)
Q Consensus        81 ~~~~-~l--a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~p------  145 (476)
                      ..|. .+  .......+++..|++.++......  ..++.+.    ...+.+....+..+++++.++++.....      
T Consensus       137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~  216 (608)
T PF10345_consen  137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP  216 (608)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence            2221 22  333334489999999999988765  3444332    3345566667878888888887743221      


Q ss_pred             ----CchhHHHHHHHH--HHHhccHHHHHHHHHHH---HHc---CC---C---c-----------------H--------
Q 011845          146 ----KSCASWIAWSQM--EMQQENNLAARQLFERA---VQA---SP---K---N-----------------R--------  182 (476)
Q Consensus       146 ----~~~~~~~~la~~--~~~~~~~~~A~~~~~~a---~~~---~~---~---~-----------------~--------  182 (476)
                          ....+|..+..+  +...|++..+...+++.   ++.   .+   .   +                 +        
T Consensus       217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~  296 (608)
T PF10345_consen  217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK  296 (608)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence                123345544443  44567766666554443   221   11   0   0                 0        


Q ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCC-------------------HHHHHHHHHHHHHcCC
Q 011845          183 -----FAWHVWGIFEANMGFIDKGKKLLKIGHAVN-------PRD-------------------PVLLQSLALLEYKYST  231 (476)
Q Consensus       183 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------------------~~~~~~la~~~~~~~~  231 (476)
                           -++..-+......+..+.|.+++.++++.-       +..                   ..+....+...+-.++
T Consensus       297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~  376 (608)
T PF10345_consen  297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD  376 (608)
T ss_pred             HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence                 112233445566677767877777776421       110                   0134456677778899


Q ss_pred             HHHHHHHHHHHhccC---CC------CHHHHHHHHHHHHHcCChhHHHHHHH--------HHHccCCCChhHHHHHHHHH
Q 011845          232 ANLARKLFRRASEID---PR------HQPVWIAWGWMEWKEGNLDTARELYE--------RALSIDSTTESAARCLQAWG  294 (476)
Q Consensus       232 ~~~A~~~~~~~~~~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~a~~~~~~~~~~~~~~~~l~  294 (476)
                      +..|....+.+....   |.      .+..++..|..+...|+.+.|...|.        .+....+..+...-...++.
T Consensus       377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~  456 (608)
T PF10345_consen  377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLA  456 (608)
T ss_pred             HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHH
Confidence            999998888776542   22      36778889999999999999999998        55556666665555556677


Q ss_pred             HHHHHhCCHHH----HHHHHHHHHhh---CCCc-HHHH-HHHHHHHHHc--CChHHHHHHHHHHHhhh-hhh--------
Q 011845          295 VLEQRVGNLSA----ARRLFRSSLNI---NSQS-YITW-MTWAQLEEDQ--GNSVRAEEIRNLYFQQR-TEV--------  354 (476)
Q Consensus       295 ~~~~~~g~~~~----A~~~~~~al~~---~p~~-~~~~-~~l~~~~~~~--g~~~~A~~~~~~~~~~~-~~~--------  354 (476)
                      .++...+....    ....++..-..   .|+. ...+ ..+...+...  -...++...+...++.. ...        
T Consensus       457 ~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~  536 (608)
T PF10345_consen  457 IILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAI  536 (608)
T ss_pred             HHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHH
Confidence            77776665444    44444433222   1111 1122 2222222111  12336666666666655 211        


Q ss_pred             -cchhhhhhhhcccchHHHHHHHHHhccccC
Q 011845          355 -VDDASWVMGFMDIIDPALDRIKQLLNLEKS  384 (476)
Q Consensus       355 -~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  384 (476)
                       ..-+++.++ .|+..+.......+..+...
T Consensus       537 ~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k  566 (608)
T PF10345_consen  537 LLNLMGHRLF-EGDVGEQAKKSARAFQLAKK  566 (608)
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHh
Confidence             123444444 56776666655555554433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=0.00044  Score=59.39  Aligned_cols=150  Identities=15%  Similarity=-0.009  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEY-IYQTLALLEA  125 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~  125 (476)
                      +.-+..+.-....|++.+|...|..++...|++.++...++.++...|+.+.|..++...-........ ........+.
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            344455666677888888888888888888888888888888888888888888887765433222211 1111122333


Q ss_pred             HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCC
Q 011845          126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK--NRFAWHVWGIFEANMGF  197 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~  197 (476)
                      +.....+. ..+++.+..+|++.++.+.++..+...|+.+.|.+.+-..+..+..  +..+...+..++...|.
T Consensus       215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence            33332222 2344556667888888888888888888888888888777776543  33444455555544443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.09  E-value=0.0087  Score=58.91  Aligned_cols=274  Identities=18%  Similarity=0.116  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhc-----CcCcHHHHHHHHHHHHHhC--
Q 011845           27 VAEARAIYAKGSQATQGENPYIWQCWAVLENKL-----GNIGKARELFDASTVA-----DKGHIAAWHGWAVLELRQG--   94 (476)
Q Consensus        27 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~--   94 (476)
                      ..+|..+++.+....   +......+|.++..-     .|.+.|+.+|+.+...     ....+.+.+.+|.+|.+..  
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            467888888886654   677777788877653     5888999999888651     1124556777888887743  


Q ss_pred             ---CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh----ccH
Q 011845           95 ---NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN---RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ----ENN  164 (476)
Q Consensus        95 ---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~~~  164 (476)
                         +...|+.+|.++-...  ++.+.+.+|.++....   +...|.++|..+...  .+..+.+.++.+|..-    -+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~  380 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL  380 (552)
T ss_pred             ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence               6677888888887664  5666777777777655   567888888888765  3567777777777642    367


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHH----cCCHHHH
Q 011845          165 LAARQLFERAVQASPKNRFAWHVWGIFEANM-GFIDKGKKLLKIGHAVNPRDPVLL----QSLALLEYK----YSTANLA  235 (476)
Q Consensus       165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~----~~la~~~~~----~~~~~~A  235 (476)
                      ..|..++.++.+..  ++.+...++.++... +.++.+...+.......-..+..-    .........    ..+...+
T Consensus       381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~  458 (552)
T KOG1550|consen  381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA  458 (552)
T ss_pred             HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence            78888888888776  333344444443322 666666555554443332211110    000000000    1123334


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHh---CCHHHHHH
Q 011845          236 RKLFRRASEIDPRHQPVWIAWGWMEWKE----GNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV---GNLSAARR  308 (476)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~  308 (476)
                      ...+.++..  ..+..+...+|.+|..-    .+++.|...|.++....      ....+++|.++..-   ..+..|..
T Consensus       459 ~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~------~~~~~nlg~~~e~g~g~~~~~~a~~  530 (552)
T KOG1550|consen  459 FSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG------AQALFNLGYMHEHGEGIKVLHLAKR  530 (552)
T ss_pred             HHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh------hHHHhhhhhHHhcCcCcchhHHHHH
Confidence            444444332  23345555555555432    24556666666655544      11234555554421   11455555


Q ss_pred             HHHHHHhhC
Q 011845          309 LFRSSLNIN  317 (476)
Q Consensus       309 ~~~~al~~~  317 (476)
                      +|.++.+.+
T Consensus       531 ~~~~~~~~~  539 (552)
T KOG1550|consen  531 YYDQASEED  539 (552)
T ss_pred             HHHHHHhcC
Confidence            555555443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=3.5e-05  Score=63.42  Aligned_cols=91  Identities=9%  Similarity=0.021  Sum_probs=59.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ  132 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  132 (476)
                      |..++....|..|+..|.+++.++|..+..|.+.+.++++..+++.+.....+++++.|+....++.+|.+......+++
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            44445555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhc
Q 011845          133 ARNLFRQATKC  143 (476)
Q Consensus       133 A~~~~~~~~~~  143 (476)
                      |+..+.++..+
T Consensus        97 aI~~Lqra~sl  107 (284)
T KOG4642|consen   97 AIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHH
Confidence            66666666443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.05  E-value=0.0029  Score=62.20  Aligned_cols=264  Identities=16%  Similarity=0.075  Sum_probs=187.1

Q ss_pred             CCchhHHHHHHHHHhc-----CCHHHHHHHHHHhhc----cCCCCChHHHHHHHHHHHHcC-----CHHHHHHHHHHHhh
Q 011845            9 EDGRPYVALGKVLSKQ-----SKVAEARAIYAKGSQ----ATQGENPYIWQCWAVLENKLG-----NIGKARELFDASTV   74 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~~~   74 (476)
                      .+..+...+|.++..-     .+.+.|+.+|+.+..    ......+.+.+.+|.+|.+..     ++..|..+|.++-.
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            4556777788887653     589999999999976    111225667888999998853     77889999999877


Q ss_pred             cCcCcHHHHHHHHHHHHHhC---CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhcCCCc
Q 011845           75 ADKGHIAAWHGWAVLELRQG---NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA----NRYEQARNLFRQATKCNPKS  147 (476)
Q Consensus        75 ~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~  147 (476)
                      .  .++.+.+.+|.++....   +...|.++|..+...  .+..+.+.++.+|..-    -+...|..++.++.+.+  .
T Consensus       322 ~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~  395 (552)
T KOG1550|consen  322 L--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--N  395 (552)
T ss_pred             c--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--C
Confidence            5  46778889999988765   678999999999765  4788889999988753    47899999999999987  4


Q ss_pred             hhHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCcHHH---HHH-HHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHH
Q 011845          148 CASWIAWSQMEMQQ-ENNLAARQLFERAVQASPKNRFA---WHV-WGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVL  218 (476)
Q Consensus       148 ~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~---~~~-l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~  218 (476)
                      +.+...++.++... +.+..+...+.......-..+..   +.. .......    ..+...+...+.++..  ..++.+
T Consensus       396 ~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a  473 (552)
T KOG1550|consen  396 PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADA  473 (552)
T ss_pred             hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHH
Confidence            45555555544332 77777776666555543322211   111 1101111    1245556666666544  446778


Q ss_pred             HHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHccCCCC
Q 011845          219 LQSLALLEYKY----STANLARKLFRRASEIDPRHQPVWIAWGWMEWKE---GNLDTARELYERALSIDSTT  283 (476)
Q Consensus       219 ~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~  283 (476)
                      ...++.+|..-    .+++.|...|.++....   ....+++|.++..-   .....|..+|.++.+.+...
T Consensus       474 ~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~  542 (552)
T KOG1550|consen  474 ILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA  542 (552)
T ss_pred             HhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence            88888887754    46899999999998877   78899999998751   12789999999998876554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=4.3e-05  Score=62.87  Aligned_cols=95  Identities=13%  Similarity=0.048  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ   93 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   93 (476)
                      +...|..++....|..|+..|.+++..+ |..+..|.+.+.|+++..+++.+..-..++++++|+.....+.+|.+....
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s   91 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS   91 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence            4455777888889999999999999998 889999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhcc
Q 011845           94 GNIKKARQLLAKGLKF  109 (476)
Q Consensus        94 ~~~~~A~~~~~~~~~~  109 (476)
                      ..+++|+..+.++..+
T Consensus        92 ~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   92 KGYDEAIKVLQRAYSL  107 (284)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            9999999999999654

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=0.0022  Score=53.96  Aligned_cols=171  Identities=11%  Similarity=0.073  Sum_probs=114.8

Q ss_pred             HcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH-HHHH
Q 011845           58 KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG-NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE-QARN  135 (476)
Q Consensus        58 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~-~A~~  135 (476)
                      +......|+.+...++..+|.+..+|...-.++...+ +..+-++++.++++.+|.+..+|...-.+....|++. .-++
T Consensus        55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe  134 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE  134 (318)
T ss_pred             ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence            3345566777777778888887777776555554443 5666777777888888888888777777777777776 6777


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHH
Q 011845          136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN-MG-----FIDKGKKLLKIGH  209 (476)
Q Consensus       136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~-----~~~~A~~~~~~~~  209 (476)
                      +.+.++..+..+-.+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .|     ..+.-+.+..+.+
T Consensus       135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I  214 (318)
T KOG0530|consen  135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI  214 (318)
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence            77778877777777777777777777778887777777777765554555433222111 11     1233345566667


Q ss_pred             hcCCCCHHHHHHHHHHHHH
Q 011845          210 AVNPRDPVLLQSLALLEYK  228 (476)
Q Consensus       210 ~~~~~~~~~~~~la~~~~~  228 (476)
                      ...|++..+|..+.-++..
T Consensus       215 ~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  215 LLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HhCCCCccHHHHHHHHHHh
Confidence            7777777777777666654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.03  E-value=5.7e-06  Score=46.56  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHH
Q 011845          309 LFRSSLNINSQSYITWMTWAQLEEDQGNSVRAE  341 (476)
Q Consensus       309 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  341 (476)
                      +|+++++++|+++.+|+++|.++...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            378889999999999999999999999988875

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=0.0037  Score=52.60  Aligned_cols=206  Identities=16%  Similarity=0.140  Sum_probs=154.9

Q ss_pred             HHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHH-
Q 011845           20 VLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG-NIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIK-   97 (476)
Q Consensus        20 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~-   97 (476)
                      ++.+...-+.|+.+-+.++..+ |.+-.+|...-.++..++ +..+-++.+..+++.+|++..+|...-.+....|++. 
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~  130 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF  130 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence            3444556778888888888888 788888877766665544 6778899999999999999999999988888999888 


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH------hccHHHHHHHH
Q 011845           98 KARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ------QENNLAARQLF  171 (476)
Q Consensus        98 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~------~~~~~~A~~~~  171 (476)
                      .-+++.+.++..+..+..+|...-.+....+.++.-+.+..++++.+-.+-.+|...-.+...      .-..+.-+.+.
T Consensus       131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt  210 (318)
T KOG0530|consen  131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYT  210 (318)
T ss_pred             chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999999999887666666543222111      12344556778


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-hcCCCCHHHHHHHHHHH
Q 011845          172 ERAVQASPKNRFAWHVWGIFEAN-MG--FIDKGKKLLKIGH-AVNPRDPVLLQSLALLE  226 (476)
Q Consensus       172 ~~a~~~~~~~~~~~~~l~~~~~~-~~--~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~  226 (476)
                      ...+...|++..+|..+..++.. .|  ............+ .....+|..+..+..+|
T Consensus       211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~  269 (318)
T KOG0530|consen  211 KDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY  269 (318)
T ss_pred             HHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence            88899999999999999888876 33  2333444444443 33334555555555555

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=0.00053  Score=58.88  Aligned_cols=158  Identities=14%  Similarity=0.001  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-HHHHHHHHHHH
Q 011845           13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI-AAWHGWAVLEL   91 (476)
Q Consensus        13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~   91 (476)
                      .-+..+.-....|++.+|...|..++... |.+..+...++.++...|+.+.|..++...-....... .........+.
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            34556677888999999999999999998 88899999999999999999999999988644332221 11111223333


Q ss_pred             HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHhccHHHHHH
Q 011845           92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK--SCASWIAWSQMEMQQENNLAARQ  169 (476)
Q Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~  169 (476)
                      +.....+. ..+++.+..+|++..+.+.++..+...|+.+.|.+.+-..++.+..  +..+...+..++...|.-+.+..
T Consensus       215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~  293 (304)
T COG3118         215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL  293 (304)
T ss_pred             HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence            33333222 2345556678999999999999999999999999999999988643  44566666666666664444444


Q ss_pred             HHH
Q 011845          170 LFE  172 (476)
Q Consensus       170 ~~~  172 (476)
                      .++
T Consensus       294 ~~R  296 (304)
T COG3118         294 AYR  296 (304)
T ss_pred             HHH
Confidence            333

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.02  E-value=0.00096  Score=62.38  Aligned_cols=115  Identities=17%  Similarity=0.040  Sum_probs=90.3

Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHhhccCC
Q 011845           34 YAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI--AAWHGWAVLELRQGNIKKARQLLAKGLKFCG  111 (476)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  111 (476)
                      ...+++.. +.+...+..-+......|+..+|..++..++-..|...  .++..+|.++.+.|...+|--++..++...|
T Consensus       202 ~~~glq~~-~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~  280 (886)
T KOG4507|consen  202 IHEGLQKN-TSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD  280 (886)
T ss_pred             HHHhhhcC-chhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence            33444443 44444444444445568999999999999987666543  5677899999999999999999998888877


Q ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh
Q 011845          112 GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA  149 (476)
Q Consensus       112 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  149 (476)
                      ....-++.++.++...+.+......|..+.+..|....
T Consensus       281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            76667899999999999999999999999999886543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.00031  Score=58.20  Aligned_cols=68  Identities=13%  Similarity=0.096  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA  149 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  149 (476)
                      .+.+++.|+...|+|-++++.....+...|.+..+++..|......-+..+|..-|.++++++|.-..
T Consensus       232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            45566666666666666666666666666666666666666666666666666666666666665433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.98  E-value=0.00074  Score=64.69  Aligned_cols=158  Identities=16%  Similarity=0.108  Sum_probs=119.4

Q ss_pred             HHHHhccHHHHHHHHHHHHHcCCCc-HHH------HHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011845          157 MEMQQENNLAARQLFERAVQASPKN-RFA------WHVWGIFEA----NMGFIDKGKKLLKIGHAVNPRDPVLLQSLALL  225 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~~~~~~-~~~------~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  225 (476)
                      +.--.|+-+.+++.+.++.+...-. +.+      |+.....+.    .....+.|.+++.......|+....++..|++
T Consensus       197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~  276 (468)
T PF10300_consen  197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRL  276 (468)
T ss_pred             hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            3334689999999999987732211 111      111111111    24567889999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhC
Q 011845          226 EYKYSTANLARKLFRRASEIDPRH----QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG  301 (476)
Q Consensus       226 ~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g  301 (476)
                      +...|+.++|++.|++++.....-    .-.++.+++++..+++|++|..++.+..+.+.-...  ...+..|.++...|
T Consensus       277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka--~Y~Y~~a~c~~~l~  354 (468)
T PF10300_consen  277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA--FYAYLAAACLLMLG  354 (468)
T ss_pred             HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH--HHHHHHHHHHHhhc
Confidence            999999999999999988543322    246778999999999999999999999987655433  34556689999999


Q ss_pred             CH-------HHHHHHHHHHHhh
Q 011845          302 NL-------SAARRLFRSSLNI  316 (476)
Q Consensus       302 ~~-------~~A~~~~~~al~~  316 (476)
                      +.       ++|.+.|.++-..
T Consensus       355 ~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  355 REEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             cchhhhhhHHHHHHHHHHHHHH
Confidence            99       8888888877544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.93  E-value=0.028  Score=55.89  Aligned_cols=303  Identities=15%  Similarity=0.030  Sum_probs=180.7

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hcCcCcHHHHHHH
Q 011845            9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGE-NPYIWQCWAVLENKLGNIGKARELFDAST-VADKGHIAAWHGW   86 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l   86 (476)
                      .-.+.+..-+..+...|...+|+...-.+   ..|. -.......+.-+...++..--..+.+.+- ..--.++......
T Consensus       345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA---~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~  421 (894)
T COG2909         345 RLKELHRAAAEWFAEHGLPSEAIDHALAA---GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQ  421 (894)
T ss_pred             chhHHHHHHHHHHHhCCChHHHHHHHHhC---CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHH
Confidence            33567777777888888888888765554   2121 12233333444555555443333333221 0011245566677


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhccCCC--c-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch-----hHHH
Q 011845           87 AVLELRQGNIKKARQLLAKGLKFCGG--N-------EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC-----ASWI  152 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~  152 (476)
                      +.......++.+|..++.++...-+.  .       ....-..|.+....|++++|.++.+.++..-|.+.     .+..
T Consensus       422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s  501 (894)
T COG2909         422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS  501 (894)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence            88888899999999998887765332  1       23344566777788999999999999998877653     3567


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHcCC----CcHH--HHHHHHHHHHHcCCHHH--HHHHHHHH----HhcCCCCHHHHH
Q 011845          153 AWSQMEMQQENNLAARQLFERAVQASP----KNRF--AWHVWGIFEANMGFIDK--GKKLLKIG----HAVNPRDPVLLQ  220 (476)
Q Consensus       153 ~la~~~~~~~~~~~A~~~~~~a~~~~~----~~~~--~~~~l~~~~~~~~~~~~--A~~~~~~~----~~~~~~~~~~~~  220 (476)
                      .++.+..-.|++++|..+...+.+...    ....  +....+.++..+|+...  ....+...    +...|-+.....
T Consensus       502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~  581 (894)
T COG2909         502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR  581 (894)
T ss_pred             hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence            788888899999999999988877632    2222  33445777788883332  22223222    223343333333


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhcc----CCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHccCCCC--hhH--HHH
Q 011845          221 SLALLEYKYSTANLARKLFRRASEI----DPRHQP---VWIAWGWMEWKEGNLDTARELYERALSIDSTT--ESA--ARC  289 (476)
Q Consensus       221 ~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~--~~~  289 (476)
                      ..+.++...-+++.+..-....++.    .|....   ..+.++.++...|++++|...+..........  ...  ...
T Consensus       582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~  661 (894)
T COG2909         582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA  661 (894)
T ss_pred             HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence            3333333333355555444444433    232222   23478899999999999999998887653222  111  111


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845          290 LQAWGVLEQRVGNLSAARRLFRSSL  314 (476)
Q Consensus       290 ~~~l~~~~~~~g~~~~A~~~~~~al  314 (476)
                      ..-........|+..+|..+..+..
T Consensus       662 ~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         662 YKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             HHhhHHHhcccCCHHHHHHHHHhcc
Confidence            2222334556788888888887743

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.93  E-value=9.6e-06  Score=45.63  Aligned_cols=32  Identities=16%  Similarity=0.404  Sum_probs=17.5

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHcCChhHHH
Q 011845          239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTAR  270 (476)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  270 (476)
                      |+++++.+|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44555555555555555555555555555553

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.92  E-value=0.0016  Score=59.25  Aligned_cols=117  Identities=17%  Similarity=0.148  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHH
Q 011845          201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK---EGNLDTARELYERAL  277 (476)
Q Consensus       201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~  277 (476)
                      -+.+|++|++.+|++...+..+-....+..+.++...-+++++..+|+++.+|..+......   .-.++.....|.+++
T Consensus        50 klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l  129 (321)
T PF08424_consen   50 KLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL  129 (321)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555443332222   123444444444444


Q ss_pred             ccCC-----------C----ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845          278 SIDS-----------T----TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN  317 (476)
Q Consensus       278 ~~~~-----------~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  317 (476)
                      ..-.           .    ......++..+.....+.|..+.|+..++-.++.+
T Consensus       130 ~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  130 RALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            3200           0    11224566777888899999999999999999886

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.0005  Score=57.04  Aligned_cols=114  Identities=11%  Similarity=0.113  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhh--------cCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTV--------ADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQ  118 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  118 (476)
                      .++..-|.-+++.|+|.+|...|..++.        ..|..++ |.                       +++......+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~-----------------------eLdk~~tpLll  234 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-WL-----------------------ELDKMITPLLL  234 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-HH-----------------------HHHHhhhHHHH
Confidence            4555667777788888888888777652        1232222 11                       12223456788


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHH
Q 011845          119 TLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFA  184 (476)
Q Consensus       119 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  184 (476)
                      +++.|+...|++-++++....++...|.+..+++..|.+....=+..+|..-|.++++++|.-..+
T Consensus       235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999975433

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.86  E-value=0.0072  Score=55.00  Aligned_cols=238  Identities=14%  Similarity=0.094  Sum_probs=141.1

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845          102 LLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN  181 (476)
Q Consensus       102 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  181 (476)
                      ++++++...|-.+++|+.....+...++-+.|+....+++...|.   ....++.+|...++-+....+|+++.+.-.  
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~--  364 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK--  364 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH--
Confidence            356666666777888888888888888888888877777666554   566677777777776666666666553210  


Q ss_pred             HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845          182 RFAWHVWGIFEAN---MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGW  258 (476)
Q Consensus       182 ~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  258 (476)
                        --+..+..-..   -|+++...+++-+-..   .-..++..+...-.+..-.+.|..+|-++-+..-....++..-|.
T Consensus       365 --r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~  439 (660)
T COG5107         365 --RKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAF  439 (660)
T ss_pred             --HHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHH
Confidence              00011111111   2233222222222111   233445545455555555677777777776544223333333332


Q ss_pred             H-HHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcC
Q 011845          259 M-EWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS--YITWMTWAQLEEDQG  335 (476)
Q Consensus       259 ~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g  335 (476)
                      + +...|++.-|..+|+-.+...|+.+..   ....-..+...++-+.|...|++++..-...  ..+|-.+......-|
T Consensus       440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y---~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G  516 (660)
T COG5107         440 IEYYATGDRATAYNIFELGLLKFPDSTLY---KEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG  516 (660)
T ss_pred             HHHHhcCCcchHHHHHHHHHHhCCCchHH---HHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc
Confidence            2 345677788888888887777777544   2333556667777788888888776553333  456777777777778


Q ss_pred             ChHHHHHHHHHHHhhhh
Q 011845          336 NSVRAEEIRNLYFQQRT  352 (476)
Q Consensus       336 ~~~~A~~~~~~~~~~~~  352 (476)
                      +...+..+-+++....|
T Consensus       517 ~lN~v~sLe~rf~e~~p  533 (660)
T COG5107         517 SLNNVYSLEERFRELVP  533 (660)
T ss_pred             chHHHHhHHHHHHHHcC
Confidence            88777777666665544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.83  E-value=0.021  Score=50.98  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSL  314 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al  314 (476)
                      ++-+.|.-.++.++|++|..+|+-++
T Consensus       248 LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  248 LLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            44455777788888888888887665

It is also involved in sporulation [].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.79  E-value=0.0024  Score=58.05  Aligned_cols=110  Identities=14%  Similarity=0.159  Sum_probs=61.8

Q ss_pred             HHHHHHhhcCcCcHHHHHHHHHHHHHhCC------------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHH
Q 011845           67 ELFDASTVADKGHIAAWHGWAVLELRQGN------------IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR  134 (476)
Q Consensus        67 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  134 (476)
                      .-|++.+..+|.+..+|..++...-..-.            .+.-+.+|++|++.+|++..++..+..+..+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            34566677777777777777665443322            234455566666666666666666555555555666666


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHH---hccHHHHHHHHHHHHH
Q 011845          135 NLFRQATKCNPKSCASWIAWSQMEMQ---QENNLAARQLFERAVQ  176 (476)
Q Consensus       135 ~~~~~~~~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~  176 (476)
                      +-+++++..+|++...|..+......   .-.++.....|.+++.
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~  130 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR  130 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            66666666666666655544443332   1234455555555443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.79  E-value=5.1e-05  Score=69.20  Aligned_cols=103  Identities=13%  Similarity=0.014  Sum_probs=54.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ  132 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  132 (476)
                      +.-.+..+.++.|+..|.++++++|+....+-..+..+.+.+++..|+.-+.++++.+|....+|+..|......+.+.+
T Consensus        11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~   90 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK   90 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence            33344445555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHH
Q 011845          133 ARNLFRQATKCNPKSCASWIAWS  155 (476)
Q Consensus       133 A~~~~~~~~~~~p~~~~~~~~la  155 (476)
                      |...|+......|+++.+...+.
T Consensus        91 A~~~l~~~~~l~Pnd~~~~r~~~  113 (476)
T KOG0376|consen   91 ALLDLEKVKKLAPNDPDATRKID  113 (476)
T ss_pred             HHHHHHHhhhcCcCcHHHHHHHH
Confidence            55555555555555554444333

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.77  E-value=0.053  Score=54.07  Aligned_cols=295  Identities=16%  Similarity=0.039  Sum_probs=174.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-HHHHHHHHHHHHhCCHHHHHHHHHHhhccCC-----CcHHHHHH
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHI-AAWHGWAVLELRQGNIKKARQLLAKGLKFCG-----GNEYIYQT  119 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~  119 (476)
                      .+.+..-+.-+...|...+|+...-.+  .+|.-. ......+.-+...++..--.    .+++.-|     .++.....
T Consensus       347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~P~Lvll  420 (894)
T COG2909         347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLASTPRLVLL  420 (894)
T ss_pred             hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhCchHHHH
Confidence            556666677777788888887766544  223222 22223344444444443332    2222223     34566677


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCC--c-------hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc-----HHHH
Q 011845          120 LALLEAKANRYEQARNLFRQATKCNPK--S-------CASWIAWSQMEMQQENNLAARQLFERAVQASPKN-----RFAW  185 (476)
Q Consensus       120 la~~~~~~g~~~~A~~~~~~~~~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~  185 (476)
                      .+.......++.+|..++.++...-+.  .       ....-..|.+....|++++|.++.+.++..-|.+     ..+.
T Consensus       421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~  500 (894)
T COG2909         421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL  500 (894)
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence            788888889999999988887665433  1       1233445677788899999999999999887765     3456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHH--HHHHHHH----hccCCCCHHHH
Q 011845          186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYKYSTANLA--RKLFRRA----SEIDPRHQPVW  253 (476)
Q Consensus       186 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A--~~~~~~~----~~~~~~~~~~~  253 (476)
                      ..++.+..-.|++++|..+..++.+.....      ..+....+.++..+|+...|  ...+...    +...|-.....
T Consensus       501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~  580 (894)
T COG2909         501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV  580 (894)
T ss_pred             hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence            677888888999999999988887763221      22334456777788843322  2222222    22233333333


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHcc----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc-----HHH-
Q 011845          254 IAWGWMEWKEGNLDTARELYERALSI----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS-----YIT-  323 (476)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~-  323 (476)
                      ...+.++...-+++.+..-....++.    .|..-.....+..++.++...|++++|..........--+.     ..+ 
T Consensus       581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~  660 (894)
T COG2909         581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA  660 (894)
T ss_pred             HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            33333333222244444444444433    44444434444578999999999999999988877653222     111 


Q ss_pred             -HHHHHHHHHHcCChHHHHHHHHH
Q 011845          324 -WMTWAQLEEDQGNSVRAEEIRNL  346 (476)
Q Consensus       324 -~~~l~~~~~~~g~~~~A~~~~~~  346 (476)
                       ...........|+.+.|.....+
T Consensus       661 ~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         661 AYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHhhHHHhcccCCHHHHHHHHHh
Confidence             12222334456888887776555

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.76  E-value=5.9e-05  Score=68.79  Aligned_cols=112  Identities=16%  Similarity=0.055  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHH
Q 011845           13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELR   92 (476)
Q Consensus        13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   92 (476)
                      ..-..+...+..+.|+.|+..|.++++.. |+.+..+...+..+.+.+++..|+.-+.++++.+|....+|+..|.+...
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~   84 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA   84 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence            34456777888899999999999999998 88999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845           93 QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA  125 (476)
Q Consensus        93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  125 (476)
                      .+.+.+|...|+......|+++.+...+..+-.
T Consensus        85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            999999999999999999999998877766643

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.74  E-value=8.8e-05  Score=41.92  Aligned_cols=31  Identities=13%  Similarity=0.295  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQ  319 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  319 (476)
                      ++..+|.++...|++++|+..|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.73  E-value=0.0019  Score=51.90  Aligned_cols=117  Identities=13%  Similarity=0.043  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCChHHHHHHH
Q 011845          268 TARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS---YITWMTWAQLEEDQGNSVRAEEIR  344 (476)
Q Consensus       268 ~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~  344 (476)
                      +.....++....++...........++..+...|++++|...++.++....+.   ..+-.+++.+..+.|.+++|...+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            44555566666665655554455567888888999999999999888543332   245678899999999999999888


Q ss_pred             HHHHhh--hhhhcchhhhhhhhcccchHHHHHHHHHhccccC
Q 011845          345 NLYFQQ--RTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKS  384 (476)
Q Consensus       345 ~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  384 (476)
                      +.....  .+.+....|.++...|+-++|...|+++++..++
T Consensus       150 ~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         150 DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence            777664  2334567888999999999999999999988744

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.73  E-value=0.0015  Score=51.92  Aligned_cols=62  Identities=16%  Similarity=0.198  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          288 RCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       288 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      .++..++..+...|++++|+..+++++..+|-+..++..+..++...|+...|...|+.+..
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            34566788899999999999999999999999999999999999999999999999998865

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.72  E-value=0.012  Score=56.47  Aligned_cols=188  Identities=13%  Similarity=0.063  Sum_probs=102.4

Q ss_pred             CHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH----------HHHHHHHHHhCC
Q 011845           26 KVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW----------HGWAVLELRQGN   95 (476)
Q Consensus        26 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----------~~la~~~~~~~~   95 (476)
                      ..++|+++.+.      ...+..|..+|......-.++-|...|-+.-.- +. ....          ...+.+-.--|+
T Consensus       678 gledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~  749 (1189)
T KOG2041|consen  678 GLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGE  749 (1189)
T ss_pred             chHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcc
Confidence            34555555443      356788888888777766777776666654221 11 1111          123334444577


Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845           96 IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNP--KSCASWIAWSQMEMQQENNLAARQLFER  173 (476)
Q Consensus        96 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~  173 (476)
                      +++|.+.|-.+-..+        .-..++.+.|+|-...++++..-.-..  ....++..+|..+.....+++|.++|..
T Consensus       750 feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  750 FEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             hhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788877775543221        123345556666666555544321111  1134677777777777777777777765


Q ss_pred             HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR  241 (476)
Q Consensus       174 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  241 (476)
                      .-.        ...++.+++....+++-..+.    ..-|++...+-.+|..+...|.-++|.+.|-+
T Consensus       822 ~~~--------~e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  822 CGD--------TENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             ccc--------hHhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            421        123445555555555433332    23355666666666666666666666665543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.68  E-value=0.00013  Score=41.15  Aligned_cols=32  Identities=19%  Similarity=0.309  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQS  320 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  320 (476)
                      .+..+|.++...|++++|+++|++++.++|++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            34555666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.68  E-value=0.043  Score=50.30  Aligned_cols=130  Identities=11%  Similarity=0.079  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-----HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI-----AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL  122 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~  122 (476)
                      .....|.++.+++++.+|..+|.++.+.....+     +.+.++..-.+-+++.+.-...+...-+..|..+.+....+.
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L   87 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL   87 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            445568888999999999999999986544443     334444444455677777777777777778888888899999


Q ss_pred             HHHHhccHHHHHHHHHHHHhcCCCch-------------hHH--HHHHHHHHHhccHHHHHHHHHHHHHc
Q 011845          123 LEAKANRYEQARNLFRQATKCNPKSC-------------ASW--IAWSQMEMQQENNLAARQLFERAVQA  177 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p~~~-------------~~~--~~la~~~~~~~~~~~A~~~~~~a~~~  177 (476)
                      ..++.+.+.+|++.+..-...-....             +.+  ...+.++...|++.++..++++.+..
T Consensus        88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            99999999999998877655421111             111  24577889999999999999988764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.67  E-value=9.9e-05  Score=41.72  Aligned_cols=32  Identities=31%  Similarity=0.589  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845          251 PVWIAWGWMEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                      .+|+.+|.++...|++++|+..|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            45566666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.0021  Score=55.92  Aligned_cols=99  Identities=15%  Similarity=0.041  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHH
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGH----IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA  121 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la  121 (476)
                      +..+-.-|.-|++..+|..|+.+|.+.+...-.+    ...|.+.+.+....|+|..|+.-+.+++..+|.+..+++.-+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            4445555777777777777777777777643332    344557777777777777777777777777777777777777


Q ss_pred             HHHHHhccHHHHHHHHHHHHhcC
Q 011845          122 LLEAKANRYEQARNLFRQATKCN  144 (476)
Q Consensus       122 ~~~~~~g~~~~A~~~~~~~~~~~  144 (476)
                      .++..+.++.+|..+++..+.++
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhh
Confidence            77777777777777777765553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.65  E-value=0.00011  Score=41.49  Aligned_cols=30  Identities=17%  Similarity=0.162  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCc
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADK   77 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p   77 (476)
                      +|+.+|.++..+|++++|+..|+++++++|
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            344444444444444444444444444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.62  E-value=0.0027  Score=50.51  Aligned_cols=58  Identities=22%  Similarity=0.250  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845          117 YQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA  174 (476)
Q Consensus       117 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  174 (476)
                      ...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++.
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3444455555555555555555555555555555555555555555555555555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.62  E-value=0.17  Score=56.13  Aligned_cols=292  Identities=10%  Similarity=0.006  Sum_probs=163.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhccCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845           16 ALGKVLSKQSKVAEARAIYAKGSQATQGE--NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ   93 (476)
Q Consensus        16 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   93 (476)
                      .++.+-++.+.|..|+-++++--....+.  ....+..+-.+|...++++.-.-...... .+|    .+..........
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a~~----sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-ADP----SLYQQILEHEAS 1462 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-cCc----cHHHHHHHHHhh
Confidence            67888889999999999999841111011  12334444558888888887766665421 122    234455566778


Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHH-HHHHHhccHHHHHHHHH
Q 011845           94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWS-QMEMQQENNLAARQLFE  172 (476)
Q Consensus        94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~  172 (476)
                      |++..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-|..++ .+..+.++++.-..+..
T Consensus      1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred             ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence            99999999999999999988777777777777778888887777666655555554444443 23355555555444322


Q ss_pred             -------------HH-HHcCCCcHHHH-HHHHHH----------HHHcCCHHHHHHHHHHHH-------------hcCCC
Q 011845          173 -------------RA-VQASPKNRFAW-HVWGIF----------EANMGFIDKGKKLLKIGH-------------AVNPR  214 (476)
Q Consensus       173 -------------~a-~~~~~~~~~~~-~~l~~~----------~~~~~~~~~A~~~~~~~~-------------~~~~~  214 (476)
                                   ++ +.....+.... ..+...          ....|-+..+.+..-+..             ...++
T Consensus      1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~ 1622 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD 1622 (2382)
T ss_pred             cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence                         00 11111111000 000000          001112222222221111             01111


Q ss_pred             C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845          215 D-----PVLLQSLALLEYKYSTANLARKLFRRAS---EID----PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       215 ~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~---~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                      +     ..-|.+....-....+..+-+-.+++++   ..+    ..-...|...|.+....|.++.|..++-.|.+..+.
T Consensus      1623 ~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~ 1702 (2382)
T KOG0890|consen 1623 EDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP 1702 (2382)
T ss_pred             ccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc
Confidence            1     1122222211111122333333333332   122    234578888888888888888888888888776533


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845          283 TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN  317 (476)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  317 (476)
                           .+....|..+...|+...|+..+++.+..+
T Consensus      1703 -----~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1703 -----EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             -----hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence                 245667888888888888888888888653

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.56  E-value=0.069  Score=49.66  Aligned_cols=92  Identities=17%  Similarity=0.332  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCC-HHHHHHHHHHh
Q 011845           28 AEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGN-IKKARQLLAKG  106 (476)
Q Consensus        28 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~  106 (476)
                      ..-...|+.+.... +.|+..|........+.+.+.+--.+|.+++..+|++++.|..-|...+..+. .+.|..++.++
T Consensus        88 ~rIv~lyr~at~rf-~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   88 NRIVFLYRRATNRF-NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            34567788888887 78999999999988888889999999999999999999999999988887776 99999999999


Q ss_pred             hccCCCcHHHHHHH
Q 011845          107 LKFCGGNEYIYQTL  120 (476)
Q Consensus       107 ~~~~p~~~~~~~~l  120 (476)
                      ++.+|+++.+|...
T Consensus       167 LR~npdsp~Lw~ey  180 (568)
T KOG2396|consen  167 LRFNPDSPKLWKEY  180 (568)
T ss_pred             hhcCCCChHHHHHH
Confidence            99999999887553

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.53  E-value=0.15  Score=52.80  Aligned_cols=329  Identities=12%  Similarity=-0.015  Sum_probs=176.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHH----cC---CHHHHHHHHHHHhhcCcCcHHHH
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQATQGEN---PYIWQCWAVLENK----LG---NIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~----~g---~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      ......++.....|+.|+..|+++.... |..   .++.+..|.....    .|   .+++|+..|++... .|.-+--|
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  555 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEY  555 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHH
Confidence            3445577788899999999999998877 443   4566777765543    23   57888888888653 46667778


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhcCCCchhHHH---HHH
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA-----NRYEQARNLFRQATKCNPKSCASWI---AWS  155 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~---~la  155 (476)
                      ...|.+|.+.|++++-+++|.-+++..|..+.+-...-.+-.++     .+-..|....--++...|.....-.   .+-
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (932)
T PRK13184        556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLE  635 (932)
T ss_pred             HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            89999999999999999999999999988765432222111111     1223344444444444444321100   000


Q ss_pred             H----------------------------HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          156 Q----------------------------MEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI  207 (476)
Q Consensus       156 ~----------------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  207 (476)
                      .                            +-+-.|..---...++++.+..+-  .+....-.+....|.++-+.+....
T Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  713 (932)
T PRK13184        636 ILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFSQFSDI  713 (932)
T ss_pred             HHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHHHHHHH
Confidence            0                            001122222333445555544332  5555556666788888776665544


Q ss_pred             HHhc-----CCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH-HHHHHHHHHHHcCChhHHHHHH
Q 011845          208 GHAV-----NPRDPV--------LLQSLALLEYKYSTANLARKLFRRASEIDPRHQP-VWIAWGWMEWKEGNLDTARELY  273 (476)
Q Consensus       208 ~~~~-----~~~~~~--------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~  273 (476)
                      .-..     .|.+..        .+..-..+......++++.+.+.   ...|.... ++...+.-....++.+.-....
T Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (932)
T PRK13184        714 LAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLD---NTDPTLILYAFDLFAIQALLDEEGESIIQLL  790 (932)
T ss_pred             HHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhh---hCCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            3321     121111        11111233334445555554333   22322221 1111222222233333333333


Q ss_pred             HHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          274 ERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLN--INSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       274 ~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      +..-...+.......+......+|.-..++++|-+.+..--.  ...+...+...+|-.+.-.++-+-|...+..+.+
T Consensus       791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  868 (932)
T PRK13184        791 QLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRE  868 (932)
T ss_pred             HHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence            332222222222122334445667777888888887743211  1233445667777777777888888777777663

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.53  E-value=0.059  Score=48.64  Aligned_cols=129  Identities=15%  Similarity=0.110  Sum_probs=60.1

Q ss_pred             cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----hccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcC-------
Q 011845          129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQ----QENNLAARQLFERAVQASPKN-RFAWHVWGIFEANMG-------  196 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~-------  196 (476)
                      +..+|..+|..+.  ....+.+.+.+|.+|..    ..+..+|..+|+++.+..... ....+.++.++..-.       
T Consensus        92 ~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~  169 (292)
T COG0790          92 DKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY  169 (292)
T ss_pred             cHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence            3444555555322  22334444555555544    225555555555555543222 122344444443321       


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 011845          197 FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG  264 (476)
Q Consensus       197 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  264 (476)
                      +...|...|.++....  ++.+...+|.+|..    ..++.+|..+|.++.+...  ....+.++ ++...|
T Consensus       170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            1124555555554443  45555555555533    2355566666666655544  45555555 444333

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.52  E-value=0.0062  Score=56.04  Aligned_cols=171  Identities=11%  Similarity=-0.067  Sum_probs=97.2

Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHH
Q 011845          209 HAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAAR  288 (476)
Q Consensus       209 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  288 (476)
                      +..+|-+.+++..++.++..+|+...|.+++++++-.........+..-..-...|.   +     +.--..+.|.....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~-----rL~~~~~eNR~ffl  104 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---C-----RLDYRRPENRQFFL  104 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---c-----ccCCccccchHHHH
Confidence            456788888888888888888888888888887764321100000000000000000   0     00001234444455


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-cHH-HHHHHHHHHHHcCChHHHHHHHHHHHh--------hhhhhcchh
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQ-SYI-TWMTWAQLEEDQGNSVRAEEIRNLYFQ--------QRTEVVDDA  358 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~  358 (476)
                      +++.....+.+.|-+..|.++.+-.+.++|. |+- +++.+-....+.++++--+++++....        .-|......
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            6666677777777777777777777777777 653 444444445566666666666555433        122333445


Q ss_pred             hhhhhhcccc---------------hHHHHHHHHHhccccCCCC
Q 011845          359 SWVMGFMDII---------------DPALDRIKQLLNLEKSSYK  387 (476)
Q Consensus       359 ~~~~~~~g~~---------------~~A~~~~~~al~~~p~~~~  387 (476)
                      +.++..+++.               ++|...+.+|+...|.-..
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~  228 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV  228 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence            5566666666               7777777777777665433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.50  E-value=0.0095  Score=48.05  Aligned_cols=93  Identities=16%  Similarity=0.137  Sum_probs=37.9

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 011845          119 TLALLEAKANRYEQARNLFRQATKCNPKS---CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM  195 (476)
Q Consensus       119 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  195 (476)
                      .++..+...|++++|+..++.++....+.   .-+-.+++.+....|.+++|+..+.......- .+......|.++...
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k  172 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK  172 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence            34444444444444444444444332111   11233444444444444444444433211100 112223344444444


Q ss_pred             CCHHHHHHHHHHHHhcC
Q 011845          196 GFIDKGKKLLKIGHAVN  212 (476)
Q Consensus       196 ~~~~~A~~~~~~~~~~~  212 (476)
                      |+-++|+..|++++...
T Consensus       173 g~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         173 GDKQEARAAYEKALESD  189 (207)
T ss_pred             CchHHHHHHHHHHHHcc
Confidence            55555555554444443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.0068  Score=52.96  Aligned_cols=100  Identities=18%  Similarity=0.161  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN----EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ  156 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  156 (476)
                      ..+-.-|.-|++.++|..|+..|.+.++..-.+    ...|.+.+.+....|+|..|+.-..+++..+|.+..+++.-+.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            445578999999999999999999999875443    4578899999999999999999999999999999999999999


Q ss_pred             HHHHhccHHHHHHHHHHHHHcCCC
Q 011845          157 MEMQQENNLAARQLFERAVQASPK  180 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~~~~~  180 (476)
                      ++.....+.+|..+++..+.++..
T Consensus       162 c~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  162 CLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHH
Confidence            999999999999999988766543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.45  E-value=0.082  Score=47.72  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=69.5

Q ss_pred             cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHH----hCC
Q 011845           24 QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKL----GNIGKARELFDASTVADKGHIAAWHGWAVLELR----QGN   95 (476)
Q Consensus        24 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~   95 (476)
                      .+++..|...+..+....   ++.....++.++...    .+..+|..+|..+..  ..++.+.+.+|.++..    ..+
T Consensus        54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d  128 (292)
T COG0790          54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLD  128 (292)
T ss_pred             cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccC
Confidence            445555555555554322   224444444444332    234555555553322  3344555555555544    235


Q ss_pred             HHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHhc-------cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----hcc
Q 011845           96 IKKARQLLAKGLKFCGGN-EYIYQTLALLEAKAN-------RYEQARNLFRQATKCNPKSCASWIAWSQMEMQ----QEN  163 (476)
Q Consensus        96 ~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~  163 (476)
                      ..+|..+|+++....... ..+...++.+|..-.       +...|...|.++....  ++.+...+|.+|..    ..+
T Consensus       129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d  206 (292)
T COG0790         129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD  206 (292)
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence            555555555555443221 122444444444321       1124444444444433  34444444444432    124


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHH
Q 011845          164 NLAARQLFERAVQASPKNRFAWHVWG  189 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~~~~~~~~~~l~  189 (476)
                      +.+|..+|.++.+...  ....+.++
T Consensus       207 ~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         207 LKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            4455555555544433  33444444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.44  E-value=0.079  Score=47.27  Aligned_cols=53  Identities=11%  Similarity=0.088  Sum_probs=29.9

Q ss_pred             HHhccHHHHHHHHHHHHhcC-CCch-------hHHHHHHHHHHHhc-cHHHHHHHHHHHHHc
Q 011845          125 AKANRYEQARNLFRQATKCN-PKSC-------ASWIAWSQMEMQQE-NNLAARQLFERAVQA  177 (476)
Q Consensus       125 ~~~g~~~~A~~~~~~~~~~~-p~~~-------~~~~~la~~~~~~~-~~~~A~~~~~~a~~~  177 (476)
                      ...|+.+.|..++.++-... ..++       ..++..|......+ +++.|..+++++.+.
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            45667777777777665543 2222       23444555555555 666666666666554

It is also involved in sporulation [].

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.38  E-value=0.37  Score=53.64  Aligned_cols=114  Identities=11%  Similarity=0.042  Sum_probs=79.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC--------hhH
Q 011845          215 DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT--------ESA  286 (476)
Q Consensus       215 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--------~~~  286 (476)
                      -...|...|++....|+++.|...+-.+.+..  -+.+....|..++..|+...|+..+++.++.+-.+        +..
T Consensus      1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence            35688888999888999999988888887766  46788888999999999999999999888653211        110


Q ss_pred             ------HHHHHHHHHHHHHhCCH--HHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 011845          287 ------ARCLQAWGVLEQRVGNL--SAARRLFRSSLNINSQSYITWMTWAQL  330 (476)
Q Consensus       287 ------~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~  330 (476)
                            ..+...++......|++  .+-.++|+.+.+..|...+.++.+|..
T Consensus      1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred             hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence                  12233445555566653  345678888888888666555555533

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.33  E-value=0.0044  Score=56.99  Aligned_cols=178  Identities=8%  Similarity=-0.056  Sum_probs=88.8

Q ss_pred             cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845           24 QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLL  103 (476)
Q Consensus        24 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  103 (476)
                      .++.+.-+.+++    .. |-..+.+..++.++..+|+...|.+++++++-.........+.....-...|..   .   
T Consensus        23 ~~Dp~~l~~ll~----~~-PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---r---   91 (360)
T PF04910_consen   23 SHDPNALINLLQ----KN-PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---R---   91 (360)
T ss_pred             ccCHHHHHHHHH----HC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---c---
Confidence            445555554443    33 788888888888888888888888888887632111100000000000000100   0   


Q ss_pred             HHhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-chhHHHHHHH-HHHHhccHHHHHHHHHHHHHcC
Q 011845          104 AKGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPK-SCASWIAWSQ-MEMQQENNLAARQLFERAVQAS  178 (476)
Q Consensus       104 ~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~  178 (476)
                        .--..+.|   ..+.+.....+.+.|-+..|.++.+-.+.++|. |+-....... ...+.++++--+..++......
T Consensus        92 --L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~  169 (360)
T PF04910_consen   92 --LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKC  169 (360)
T ss_pred             --cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhh
Confidence              00001112   123344455555566666666666666666665 4433322222 2334455554555444433311


Q ss_pred             CC-----cHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhcCCC
Q 011845          179 PK-----NRFAWHVWGIFEANMGFI---------------DKGKKLLKIGHAVNPR  214 (476)
Q Consensus       179 ~~-----~~~~~~~l~~~~~~~~~~---------------~~A~~~~~~~~~~~~~  214 (476)
                      ..     -|..-+..+.++...++.               +.|...+.+++...|.
T Consensus       170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            10     123445555666666665               7788888888877764

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.27  E-value=0.00026  Score=61.76  Aligned_cols=90  Identities=24%  Similarity=0.210  Sum_probs=62.4

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 011845          193 ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAREL  272 (476)
Q Consensus       193 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  272 (476)
                      ...|.+++|++.|..++.++|.....+...+.++.+++++..|+.-+..+++++|+....+-..+.+...+|++++|...
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777666666666666667777777777


Q ss_pred             HHHHHccCCC
Q 011845          273 YERALSIDST  282 (476)
Q Consensus       273 ~~~a~~~~~~  282 (476)
                      +..+.+++-+
T Consensus       205 l~~a~kld~d  214 (377)
T KOG1308|consen  205 LALACKLDYD  214 (377)
T ss_pred             HHHHHhcccc
Confidence            7777666433

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=97.24  E-value=0.25  Score=48.97  Aligned_cols=342  Identities=18%  Similarity=0.190  Sum_probs=202.1

Q ss_pred             cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHH---HcCCHHHHHHHHHHHhhcCcCcH
Q 011845            4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLEN---KLGNIGKARELFDASTVADKGHI   80 (476)
Q Consensus         4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~p~~~   80 (476)
                      +..++.+...+..|..++...|++++-...=.++.... |..+.+|.....-..   ..+...++...|++++. +-..+
T Consensus       106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v  183 (881)
T KOG0128|consen  106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSV  183 (881)
T ss_pred             hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccc
Confidence            34567777788888889999999888776666666666 888888887765433   34678888999999885 34556


Q ss_pred             HHHHHHHHHHH-------HhCCHHHHHHHHHHhhccCC-------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845           81 AAWHGWAVLEL-------RQGNIKKARQLLAKGLKFCG-------GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK  146 (476)
Q Consensus        81 ~~~~~la~~~~-------~~~~~~~A~~~~~~~~~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  146 (476)
                      ..|...+....       ..++++.-..+|.+++..-.       .....+..+-..|...-..++-+.++...+... -
T Consensus       184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~  262 (881)
T KOG0128|consen  184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-L  262 (881)
T ss_pred             hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-c
Confidence            66666555554       34567788888888876432       123455555566666666677777777777664 2


Q ss_pred             chhH----HHHHH--H-HHHHhccHHHHHH-------HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845          147 SCAS----WIAWS--Q-MEMQQENNLAARQ-------LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN  212 (476)
Q Consensus       147 ~~~~----~~~la--~-~~~~~~~~~~A~~-------~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  212 (476)
                      +..+    |....  . ......+++.|..       .+++.++..|.....|..+.......|..-.-...+++++...
T Consensus       263 D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~  342 (881)
T KOG0128|consen  263 DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM  342 (881)
T ss_pred             hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc
Confidence            2221    11111  1 1112233333333       3444445555555677777788888888877777888887776


Q ss_pred             CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCCHHHH-------------------------------HHHHHHH
Q 011845          213 PRDPVLLQSLALLEYK-YSTANLARKLFRRASEIDPRHQPVW-------------------------------IAWGWME  260 (476)
Q Consensus       213 ~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~-------------------------------~~l~~~~  260 (476)
                      +.+...|...+...-. .+-.+.+...+-+++..+|-....|                               .+....|
T Consensus       343 ~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~  422 (881)
T KOG0128|consen  343 VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAY  422 (881)
T ss_pred             cccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666665543321 1111112222222222222111111                               1111111


Q ss_pred             H-Hc-------------CChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhCCCcHH-HH
Q 011845          261 W-KE-------------GNLDTARELYERALSIDSTTESAARCLQAWGVLEQ-RVGNLSAARRLFRSSLNINSQSYI-TW  324 (476)
Q Consensus       261 ~-~~-------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~-~~  324 (476)
                      . ..             ..|..|...|.......-+  .....+..+|.++. ..++.+.++.++...+...-.+.. .|
T Consensus       423 rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~D--t~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~W  500 (881)
T KOG0128|consen  423 RRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLD--TRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKW  500 (881)
T ss_pred             HHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHH
Confidence            1 11             1234444444444333111  11233444555544 467889999999888877655555 88


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845          325 MTWAQLEEDQGNSVRAEEIRNLYFQQ  350 (476)
Q Consensus       325 ~~l~~~~~~~g~~~~A~~~~~~~~~~  350 (476)
                      +....+....|+...+..+++.++..
T Consensus       501 le~~~lE~~~g~~~~~R~~~R~ay~~  526 (881)
T KOG0128|consen  501 LEAINLEREYGDGPSARKVLRKAYSQ  526 (881)
T ss_pred             HHHHhHHHHhCCchhHHHHHHHHHhc
Confidence            99999999999999999988877763

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.23  E-value=0.00074  Score=38.02  Aligned_cols=31  Identities=19%  Similarity=0.418  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQ  319 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  319 (476)
                      ++..+|.++...|++++|..+|+++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4555666666666666666666666666653

...

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.17  E-value=0.00048  Score=60.11  Aligned_cols=123  Identities=16%  Similarity=0.075  Sum_probs=94.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ  132 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  132 (476)
                      +.-.+..|.++.|++.|..++.++|.....+...+.++.++++...|+.-+..++.++|+...-+-..+.....+|+|.+
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            34445678899999999999999999998899999999999999999999999999999988888888888888999999


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845          133 ARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ  176 (476)
Q Consensus       133 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  176 (476)
                      |...+..+.+++-+. .+--.+-.+.-..+..++-...+++..+
T Consensus       201 aa~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~~  243 (377)
T KOG1308|consen  201 AAHDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERARE  243 (377)
T ss_pred             HHHHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHHH
Confidence            999999998886432 2222233444444444444444444443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.09  E-value=0.32  Score=47.30  Aligned_cols=178  Identities=13%  Similarity=0.073  Sum_probs=118.8

Q ss_pred             cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHH----------HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 011845            6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIW----------QCWAVLENKLGNIGKARELFDASTVA   75 (476)
Q Consensus         6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~la~~~~~~g~~~~A~~~~~~~~~~   75 (476)
                      -+| .++.|..+|......-.++.|...|-+.-.-  + -....          ...|.+-.--|.+++|.+.|-.+-..
T Consensus       688 dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY--~-Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr  763 (1189)
T KOG2041|consen  688 DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY--A-GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR  763 (1189)
T ss_pred             cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc--c-chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh
Confidence            344 6789999999999888899999888876321  1 11111          22344444568899999888654322


Q ss_pred             CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH
Q 011845           76 DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG--GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA  153 (476)
Q Consensus        76 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  153 (476)
                         +     ....++.+.|+|-...++++..-.-..  .-..++..+|..+.....|++|.++|...-..        -.
T Consensus       764 ---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~  827 (1189)
T KOG2041|consen  764 ---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------EN  827 (1189)
T ss_pred             ---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------Hh
Confidence               1     223455677888777777665432221  12468889999999999999999998875322        23


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI  207 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  207 (476)
                      ++.+++...++++-.    .....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus       828 ~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  828 QIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            456677776666543    33444577777888888888888888888887754

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.08  E-value=0.00084  Score=37.80  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845          251 PVWIAWGWMEWKEGNLDTARELYERALSIDS  281 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  281 (476)
                      .+|+.+|.++...|++++|+.+|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3566666666666666666666666666655

...

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.02  E-value=0.097  Score=44.62  Aligned_cols=206  Identities=10%  Similarity=0.073  Sum_probs=118.1

Q ss_pred             cCCHHHHHHHHHHHhhcCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHhhccC-----CCcHH-HHHHHHHHHHHhc
Q 011845           59 LGNIGKARELFDASTVADKGHI----AAWHGWAVLELRQGNIKKARQLLAKGLKFC-----GGNEY-IYQTLALLEAKAN  128 (476)
Q Consensus        59 ~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~-~~~~la~~~~~~g  128 (476)
                      ....++|+..|++++++.+...    .++-.+..+.+++|++++-...|.+++..-     .+..+ ....+...-....
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            3467777777777777766543    345566677777777777777777665421     11111 1111111112223


Q ss_pred             cHHHHHHHHHHHHhcC--CCchhHH----HHHHHHHHHhccHHHHHHHHHHHHHcCCCc------------HHHHHHHHH
Q 011845          129 RYEQARNLFRQATKCN--PKSCASW----IAWSQMEMQQENNLAARQLFERAVQASPKN------------RFAWHVWGI  190 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~--p~~~~~~----~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~l~~  190 (476)
                      +.+--..+|+..+..-  ..+...|    ..+|.+|+..|+|.+-.+++++.-......            .++|..-..
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence            3333334444433321  2222333    468888888888887777776655432211            244555566


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHhccCCCC-----H--HHHHHHH
Q 011845          191 FEANMGFIDKGKKLLKIGHAVNPR--DPVLLQ----SLALLEYKYSTANLARKLFRRASEIDPRH-----Q--PVWIAWG  257 (476)
Q Consensus       191 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~----~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~--~~~~~l~  257 (476)
                      +|..+.+-.+-..+|++++.+...  +|.+.-    .=|..+.+.|++++|-.-|-.+++.....     .  .-|..++
T Consensus       200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA  279 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA  279 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence            777788888888888888876532  333222    22456778888999888888887764322     1  2344566


Q ss_pred             HHHHHcC
Q 011845          258 WMEWKEG  264 (476)
Q Consensus       258 ~~~~~~g  264 (476)
                      ..+.+.|
T Consensus       280 NMLmkS~  286 (440)
T KOG1464|consen  280 NMLMKSG  286 (440)
T ss_pred             HHHHHcC
Confidence            6666655

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.91  E-value=0.0027  Score=35.35  Aligned_cols=29  Identities=28%  Similarity=0.306  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 011845          117 YQTLALLEAKANRYEQARNLFRQATKCNP  145 (476)
Q Consensus       117 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p  145 (476)
                      ++.+|.++...|++++|+..|+++++..|
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            33444444444444444444444444444

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.87  E-value=0.099  Score=44.58  Aligned_cols=50  Identities=14%  Similarity=0.213  Sum_probs=34.4

Q ss_pred             hCCHHHHHHHHHHhhccCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845           93 QGNIKKARQLLAKGLKFCGGNE----YIYQTLALLEAKANRYEQARNLFRQATK  142 (476)
Q Consensus        93 ~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~  142 (476)
                      ....++|+..|++++++.+...    .++..+..+++.+|++++-...|.+++.
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            3467777777777777776543    3555666777777777777777777654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.83  E-value=0.03  Score=44.04  Aligned_cols=77  Identities=22%  Similarity=0.107  Sum_probs=38.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR  129 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  129 (476)
                      ..+-...++.+++..++..+--+.|..+..-..-|.++...|++.+|+.+++.+....|..+.+--.++.|+...|+
T Consensus        17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            33334444555555555544444555555555555555555555555555555544444444444444444444443

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.21  Score=47.18  Aligned_cols=77  Identities=12%  Similarity=-0.017  Sum_probs=36.3

Q ss_pred             HHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845           66 RELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN----EYIYQTLALLEAKANRYEQARNLFRQAT  141 (476)
Q Consensus        66 ~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~  141 (476)
                      .+.+.......|+++......+..+...|+.+.|+..++..+.  +.-    .-.++.+|.++.-+.+|..|...+....
T Consensus       253 ~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~  330 (546)
T KOG3783|consen  253 EKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR  330 (546)
T ss_pred             HHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3333333444455554444555555555555555555555444  111    1123444555555555555555555554


Q ss_pred             hcC
Q 011845          142 KCN  144 (476)
Q Consensus       142 ~~~  144 (476)
                      ...
T Consensus       331 des  333 (546)
T KOG3783|consen  331 DES  333 (546)
T ss_pred             hhh
Confidence            443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.80  E-value=0.0032  Score=34.98  Aligned_cols=31  Identities=13%  Similarity=0.187  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Q 011845          150 SWIAWSQMEMQQENNLAARQLFERAVQASPK  180 (476)
Q Consensus       150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  180 (476)
                      +++.+|.++...|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666664

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.75  E-value=0.033  Score=43.82  Aligned_cols=83  Identities=13%  Similarity=0.002  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      .+.....+-...++.+++..++..+--+.|..+.+-..-|.++...|+|.+|+.+++.+....|..+.+--.++.|+...
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            34444444555556666666666655566666666666666666666666666666666555555555555555555555


Q ss_pred             ccH
Q 011845          162 ENN  164 (476)
Q Consensus       162 ~~~  164 (476)
                      |+.
T Consensus        92 ~D~   94 (160)
T PF09613_consen   92 GDP   94 (160)
T ss_pred             CCh
Confidence            553

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.68  E-value=0.012  Score=53.98  Aligned_cols=125  Identities=10%  Similarity=0.027  Sum_probs=91.6

Q ss_pred             HHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011845          159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKL  238 (476)
Q Consensus       159 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  238 (476)
                      ...|+.-.|-.-+..++...|..|......+.+...+|.|+.+...+..+-..-.....+...+-......|++++|...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence            34577777777777778888888877777788888888888888877666555444445555666667778888888888


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845          239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT  283 (476)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  283 (476)
                      -.-.+...-+++++....+......|-++++..++++.+.++|..
T Consensus       380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            777777766677766666666667777888888888888877654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.65  E-value=0.0044  Score=35.34  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845          290 LQAWGVLEQRVGNLSAARRLFRSSL  314 (476)
Q Consensus       290 ~~~l~~~~~~~g~~~~A~~~~~~al  314 (476)
                      +.++|.+|...|++++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455666666666666666666644

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.64  E-value=0.042  Score=40.08  Aligned_cols=44  Identities=16%  Similarity=0.124  Sum_probs=20.5

Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845          133 ARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ  176 (476)
Q Consensus       133 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  176 (476)
                      +++.|.++..+.|..+..++.+|.-+.....|+++....++++.
T Consensus        63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            34445555555555444444444444444444444444444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.63  E-value=0.035  Score=39.49  Aligned_cols=45  Identities=18%  Similarity=0.125  Sum_probs=23.6

Q ss_pred             HHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC
Q 011845           67 ELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG  111 (476)
Q Consensus        67 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  111 (476)
                      ..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr   53 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR   53 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            344455555555555555555555555555555555555555544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.63  E-value=0.34  Score=46.73  Aligned_cols=81  Identities=17%  Similarity=0.154  Sum_probs=45.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC-------------CCcHHHHHHH
Q 011845           54 VLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC-------------GGNEYIYQTL  120 (476)
Q Consensus        54 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------p~~~~~~~~l  120 (476)
                      ..+...|.+++|...---.+.     ..-|..+|.-....=+++-|.+.|.+...+.             .....--..+
T Consensus       564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl  638 (1081)
T KOG1538|consen  564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL  638 (1081)
T ss_pred             hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence            345667777776544221111     1347778887777788888888887764331             0000112344


Q ss_pred             HHHHHHhccHHHHHHHHHH
Q 011845          121 ALLEAKANRYEQARNLFRQ  139 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~  139 (476)
                      +.++.-.|++.+|.++|.+
T Consensus       639 A~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  639 ADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HHHHHhhhhHHHHHHHHHH
Confidence            5555556666666666554

>PRK10941 hypothetical protein; Provisional

Probab=96.60  E-value=0.031  Score=48.96  Aligned_cols=70  Identities=13%  Similarity=-0.014  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHH
Q 011845          218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA  287 (476)
Q Consensus       218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  287 (476)
                      .+.++-.++...++++.|+.+.+.++...|+++.-+...|.+|.+.|.+..|...++..++..|+++.+.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            3455666777777777777777777777777777777777777777777777777777777777776653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.53  E-value=0.02  Score=35.75  Aligned_cols=31  Identities=19%  Similarity=0.291  Sum_probs=12.6

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845          254 IAWGWMEWKEGNLDTARELYERALSIDSTTE  284 (476)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  284 (476)
                      +.++..+.+.|+|++|..+.+.+++..|++.
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            3344444444444444444444444444443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.52  E-value=0.038  Score=40.26  Aligned_cols=27  Identities=11%  Similarity=0.144  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845          305 AARRLFRSSLNINSQSYITWMTWAQLE  331 (476)
Q Consensus       305 ~A~~~~~~al~~~p~~~~~~~~l~~~~  331 (476)
                      .++++|.++..+.|.....++.+|.-+
T Consensus        62 ~sve~~s~a~~Lsp~~A~~L~~la~~l   88 (111)
T PF04781_consen   62 GSVECFSRAVELSPDSAHSLFELASQL   88 (111)
T ss_pred             HhHHHHHHHhccChhHHHHHHHHHHHh
Confidence            466777777777777755555555543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.50  E-value=0.047  Score=38.79  Aligned_cols=64  Identities=14%  Similarity=-0.045  Sum_probs=32.9

Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHhcc
Q 011845          100 RQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS--CASWIAWSQMEMQQEN  163 (476)
Q Consensus       100 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~  163 (476)
                      +..+++.+..+|++..+.+.++..+...|++++|++.+-.+++.+++.  ..+...+..++...|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            344555555666666666666666666666666666666666655443  3334444444444444

>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.48  E-value=0.0013  Score=41.53  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.6

Q ss_pred             cccCCCcccccccCccccccCC
Q 011845          446 EKTSNPSVVRKVNYPRRRIFRP  467 (476)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~  467 (476)
                      .++..|+|+||++.+.|+.|||
T Consensus        38 dp~~~PDPERWLP~~dRS~yrp   59 (59)
T PF08492_consen   38 DPGKTPDPERWLPKRDRSYYRP   59 (59)
T ss_pred             CCCCCCCccccCchhhhcccCC
Confidence            4566799999999999999997

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.47  E-value=0.027  Score=35.19  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQL  330 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  330 (476)
                      .++.++..+.+.|++++|..+.+.+++..|++..+......+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            567789999999999999999999999999998876544433

>PRK11619 lytic murein transglycosylase; Provisional

Probab=96.46  E-value=1.2  Score=44.91  Aligned_cols=130  Identities=6%  Similarity=-0.153  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHhhcCcCcHHHHHHHHHH-
Q 011845           13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG--NIGKARELFDASTVADKGHIAAWHGWAVL-   89 (476)
Q Consensus        13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~la~~-   89 (476)
                      ..+.-+.-.++.|++..+.....++ ... |-  ..+.....+....+  .+++    +...+..+|+.+..-...... 
T Consensus        35 ~~f~~A~~a~~~g~~~~~~~~~~~l-~d~-pL--~~yl~y~~L~~~l~~~~~~e----v~~Fl~~~~~~P~~~~Lr~~~l  106 (644)
T PRK11619         35 QRYQQIKQAWDNRQMDVVEQLMPTL-KDY-PL--YPYLEYRQLTQDLMNQPAVQ----VTNFIRANPTLPPARSLQSRFV  106 (644)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc-cCC-Cc--HhHHHHHHHHhccccCCHHH----HHHHHHHCCCCchHHHHHHHHH
Confidence            4456677777788888776666654 222 22  22322333322222  3443    333444556655443333222 


Q ss_pred             --HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845           90 --ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAW  154 (476)
Q Consensus        90 --~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  154 (476)
                        +.+.+++..-+.++    ...|.+....+.++......|+.++|.....++.......+.....+
T Consensus       107 ~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l  169 (644)
T PRK11619        107 NELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKL  169 (644)
T ss_pred             HHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHH
Confidence              33456666555533    23477788888888888889998888888777766654444443333

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.45  E-value=0.33  Score=38.58  Aligned_cols=118  Identities=14%  Similarity=0.071  Sum_probs=46.2

Q ss_pred             HcCCHHHHHHHHHHHhhcCcCc--HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc----HHHHHHHHHHHHHhccHH
Q 011845           58 KLGNIGKARELFDASTVADKGH--IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN----EYIYQTLALLEAKANRYE  131 (476)
Q Consensus        58 ~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~  131 (476)
                      +.+..++|+..|..+-+.+-..  .-+.+..+.+....|+...|+..|..+-...|--    ..+...-+.++...|.|+
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            3444444444444443322211  1233344444444444444444444443332110    112333334444444444


Q ss_pred             HHHHHHHHHHh-cCCCchhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845          132 QARNLFRQATK-CNPKSCASWIAWSQMEMQQENNLAARQLFERAV  175 (476)
Q Consensus       132 ~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  175 (476)
                      ......+..-. .+|--..+.-.||..-++.|++.+|.+.|.++.
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia  194 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA  194 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence            44333332211 111122233344444444555555555554443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.44  E-value=0.016  Score=50.10  Aligned_cols=70  Identities=17%  Similarity=0.248  Sum_probs=46.5

Q ss_pred             HHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845           87 AVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ  156 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  156 (476)
                      +.-..+.|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.++
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            3334466677777777777777777777777777776666666667777777777777766666655443

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.87  Score=43.18  Aligned_cols=109  Identities=12%  Similarity=0.014  Sum_probs=76.4

Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHhccHHHHHHHHH
Q 011845           97 KKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS----CASWIAWSQMEMQQENNLAARQLFE  172 (476)
Q Consensus        97 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~  172 (476)
                      +...+.+.......|+++......+.++...|+.+.|+..++..+.  +..    .-.++.+|.++.-+.+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4556666666778899999999999999999998888888888877  222    2246678888989999999999999


Q ss_pred             HHHHcCCCcHHHHHHHH-HHH--------HHcCCHHHHHHHHHH
Q 011845          173 RAVQASPKNRFAWHVWG-IFE--------ANMGFIDKGKKLLKI  207 (476)
Q Consensus       173 ~a~~~~~~~~~~~~~l~-~~~--------~~~~~~~~A~~~~~~  207 (476)
                      ...+.+.-+.-.|..++ .++        ...|+-+.|..+++.
T Consensus       328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~  371 (546)
T KOG3783|consen  328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKV  371 (546)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHH
Confidence            88776554433333333 222        223466655554443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.43  E-value=0.73  Score=44.58  Aligned_cols=239  Identities=14%  Similarity=0.112  Sum_probs=120.5

Q ss_pred             HHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------------CcCcHHHHH
Q 011845           19 KVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVA--------------DKGHIAAWH   84 (476)
Q Consensus        19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~p~~~~~~~   84 (476)
                      ..+...|.+++|...---.      -...-|..+|.-....=+++-|.+.|.++-..              ....+ --.
T Consensus       564 ~q~Ieag~f~ea~~iaclg------Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~i  636 (1081)
T KOG1538|consen  564 YQYIERGLFKEAYQIACLG------VTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDL  636 (1081)
T ss_pred             hhhhhccchhhhhcccccc------eecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHH
Confidence            4567788888876532221      22335778888888888999999999987421              11112 223


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-hhHHH-----------
Q 011845           85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS-CASWI-----------  152 (476)
Q Consensus        85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~-----------  152 (476)
                      .+|..+.-.|++.+|.++|.+.-..+    .    ...+|..+..++.|.+++..+-   |.. .....           
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~en----R----AlEmyTDlRMFD~aQE~~~~g~---~~eKKmL~RKRA~WAr~~ke  705 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHEN----R----ALEMYTDLRMFDYAQEFLGSGD---PKEKKMLIRKRADWARNIKE  705 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchh----h----HHHHHHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHhhhcCC
Confidence            56777888888888888887642211    1    1122233333333333322210   000 00111           


Q ss_pred             --HHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 011845          153 --AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS  230 (476)
Q Consensus       153 --~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  230 (476)
                        ..|.++...|+.++|+.+.-                     ..|-.+-+   ++-+-+++..+.+.+..++..+.+..
T Consensus       706 PkaAAEmLiSaGe~~KAi~i~~---------------------d~gW~d~l---idI~rkld~~ere~l~~~a~ylk~l~  761 (1081)
T KOG1538|consen  706 PKAAAEMLISAGEHVKAIEICG---------------------DHGWVDML---IDIARKLDKAEREPLLLCATYLKKLD  761 (1081)
T ss_pred             cHHHHHHhhcccchhhhhhhhh---------------------cccHHHHH---HHHHhhcchhhhhHHHHHHHHHhhcc
Confidence              12333344444444433211                     11111111   11122233334445555555555555


Q ss_pred             CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845          231 TANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLF  310 (476)
Q Consensus       231 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  310 (476)
                      .+.-|.++|.+.-.        ...+..++...+++.+|..+-++--+..|+-      ++-.|..+.+..++++|.+.|
T Consensus       762 ~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV------y~pyaqwLAE~DrFeEAqkAf  827 (1081)
T KOG1538|consen  762 SPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV------YMPYAQWLAENDRFEEAQKAF  827 (1081)
T ss_pred             ccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccccccc------cchHHHHhhhhhhHHHHHHHH
Confidence            66666666654422        1234455566777777776666554444432      444466666666666666666


Q ss_pred             HHH
Q 011845          311 RSS  313 (476)
Q Consensus       311 ~~a  313 (476)
                      .++
T Consensus       828 hkA  830 (1081)
T KOG1538|consen  828 HKA  830 (1081)
T ss_pred             HHh
Confidence            554

>PRK10941 hypothetical protein; Provisional

Probab=96.43  E-value=0.047  Score=47.83  Aligned_cols=65  Identities=17%  Similarity=0.148  Sum_probs=34.3

Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVL  218 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  218 (476)
                      +-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+
T Consensus       187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            33444555555555555555555555555555555555555555555555555555555555443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.40  E-value=0.016  Score=50.12  Aligned_cols=65  Identities=25%  Similarity=0.259  Sum_probs=33.7

Q ss_pred             HHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHH
Q 011845          124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVW  188 (476)
Q Consensus       124 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  188 (476)
                      ..+.|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.
T Consensus       126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR  190 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR  190 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence            33445555555555555555555555555555555555555555555555555555555444433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.38  E-value=0.0072  Score=34.44  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=8.0

Q ss_pred             HHHHHHHHhccHHHHHHHHHH
Q 011845          119 TLALLEAKANRYEQARNLFRQ  139 (476)
Q Consensus       119 ~la~~~~~~g~~~~A~~~~~~  139 (476)
                      .+|.+|...|++++|+.+|++
T Consensus         4 ~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    4 NLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH
Confidence            333444444444444444443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.34  E-value=0.9  Score=42.35  Aligned_cols=109  Identities=9%  Similarity=-0.070  Sum_probs=74.3

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA   82 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~   82 (476)
                      +|+..|.++......+.+....|+|+.+...+..+-..- .........+-......|++++|.....-++...-++++.
T Consensus       315 ~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei  393 (831)
T PRK15180        315 ALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEV  393 (831)
T ss_pred             HHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhh
Confidence            355667777777777777777777777777766654333 2333445555666677777777777777777655566666


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhhccCCC
Q 011845           83 WHGWAVLELRQGNIKKARQLLAKGLKFCGG  112 (476)
Q Consensus        83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  112 (476)
                      ....+......|-++++...+++.+.++|.
T Consensus       394 ~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        394 LTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             eeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            666666666777888888888888877663

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.25  Score=46.95  Aligned_cols=137  Identities=15%  Similarity=0.059  Sum_probs=79.6

Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc---------------------cCCCChhHHHHHHHHHHHHHHhCCHHH
Q 011845          247 PRHQPVWIAWGWMEWKEGNLDTARELYERALS---------------------IDSTTESAARCLQAWGVLEQRVGNLSA  305 (476)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~  305 (476)
                      |-+...+..++.+...+|+.+.|....++++=                     ..|.+.....+++.....+.+.|-+..
T Consensus       281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT  360 (665)
T KOG2422|consen  281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT  360 (665)
T ss_pred             CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence            44455666677777777776666666555542                     123343344455555666677788888


Q ss_pred             HHHHHHHHHhhCCC-cHHHHHHHHHHH-HHcCChHHHHHHHHHHH-----hhhhhhcchhhhhhhhccc-----chHHHH
Q 011845          306 ARRLFRSSLNINSQ-SYITWMTWAQLE-EDQGNSVRAEEIRNLYF-----QQRTEVVDDASWVMGFMDI-----IDPALD  373 (476)
Q Consensus       306 A~~~~~~al~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~~~g~-----~~~A~~  373 (476)
                      |.++.+-.+.++|. ++.+...+..+| .+..+|+=-+++++..-     ...|......+.+++.+..     -+.|..
T Consensus       361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~  440 (665)
T KOG2422|consen  361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALN  440 (665)
T ss_pred             HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHH
Confidence            88888888888877 665544444444 34455555555544432     2334444444444443332     345777


Q ss_pred             HHHHHhcccc
Q 011845          374 RIKQLLNLEK  383 (476)
Q Consensus       374 ~~~~al~~~p  383 (476)
                      .+.+|+.+.|
T Consensus       441 ~l~qAl~~~P  450 (665)
T KOG2422|consen  441 ALLQALKHHP  450 (665)
T ss_pred             HHHHHHHhCc
Confidence            7777777777

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.25  E-value=0.095  Score=42.92  Aligned_cols=66  Identities=14%  Similarity=0.050  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                      .++..+|..|.+.|+.+.|++.|.++............++..+..+....|++.....+..++-..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            345556666666666666666666666655555555555556666666666666666666655443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.19  E-value=0.35  Score=37.52  Aligned_cols=71  Identities=8%  Similarity=-0.028  Sum_probs=33.6

Q ss_pred             hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           93 QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                      .++.+++..++..+--+.|+.+.+-..-|.++...|+|.+|+.+++...+..+..+...-.++.|+...|+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            44444444444444444455444444445555555555555555555444444444444444444444443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=96.18  E-value=1.6  Score=43.67  Aligned_cols=339  Identities=15%  Similarity=0.168  Sum_probs=191.7

Q ss_pred             ccCCCCchhHHHHHHHH---HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHH-------HcCCHHHHHHHHHHHhh
Q 011845            5 DYWPEDGRPYVALGKVL---SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLEN-------KLGNIGKARELFDASTV   74 (476)
Q Consensus         5 ~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~~~~   74 (476)
                      +..|.++..|..-..-.   ...+.-.++...|++++...  .++.+|...+....       ..++++....+|.+++.
T Consensus       141 ~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~  218 (881)
T KOG0128|consen  141 EIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALR  218 (881)
T ss_pred             HhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence            45677777776554332   23478888999999998654  56677766665554       34667888888888875


Q ss_pred             cCcC-------cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHH----HHHHH--H-HHHHhccHHHHHH-----
Q 011845           75 ADKG-------HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYI----YQTLA--L-LEAKANRYEQARN-----  135 (476)
Q Consensus        75 ~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~~~la--~-~~~~~g~~~~A~~-----  135 (476)
                      .-..       ....+..+-..|...-..++-+.++...+... -+..+    |....  . ......+++.|..     
T Consensus       219 s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~  297 (881)
T KOG0128|consen  219 SLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKI  297 (881)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHH
Confidence            3211       12334445555555555566777777766553 22211    11111  1 1112233444433     


Q ss_pred             --HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcC
Q 011845          136 --LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN-MGFIDKGKKLLKIGHAVN  212 (476)
Q Consensus       136 --~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~  212 (476)
                        .+++.+...|.....|..+.......|+...-...+++++...+.+...|...+...-. ++-.+.+...+.+++..+
T Consensus       298 ~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c  377 (881)
T KOG0128|consen  298 LFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC  377 (881)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCC
Confidence              34444444555555677777778888888888888888887777777777766554321 111112222222222222


Q ss_pred             CCCHHHH-------------------------------HHHHHHHH-HcC-------------CHHHHHHHHHHHhcc-C
Q 011845          213 PRDPVLL-------------------------------QSLALLEY-KYS-------------TANLARKLFRRASEI-D  246 (476)
Q Consensus       213 ~~~~~~~-------------------------------~~la~~~~-~~~-------------~~~~A~~~~~~~~~~-~  246 (476)
                      |-...+|                               .+....+. ..+             .+..|...|...... .
T Consensus       378 p~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~  457 (881)
T KOG0128|consen  378 PWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQL  457 (881)
T ss_pred             chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence            2111111                               11111111 111             123344444443333 1


Q ss_pred             CCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CCCcH-H
Q 011845          247 PRHQPVWIAWGWMEW-KEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI--NSQSY-I  322 (476)
Q Consensus       247 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~-~  322 (476)
                      ......+...|.++. .+++.+.|+.++...+......-  ...|.....+-...|+...++.++++++..  +|++. .
T Consensus       458 Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i--ag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~e  535 (881)
T KOG0128|consen  458 DTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI--AGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALE  535 (881)
T ss_pred             hhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH--HHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHH
Confidence            112344555565554 46788999999888776644432  225667778888889999999999998865  34423 5


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHH
Q 011845          323 TWMTWAQLEEDQGNSVRAEEIRNLYF  348 (476)
Q Consensus       323 ~~~~l~~~~~~~g~~~~A~~~~~~~~  348 (476)
                      ++..+-.+....|.++......++..
T Consensus       536 v~~~~~r~Ere~gtl~~~~~~~~~~~  561 (881)
T KOG0128|consen  536 VLEFFRRFEREYGTLESFDLCPEKVL  561 (881)
T ss_pred             HHHHHHHHHhccccHHHHhhhHHhhc
Confidence            66777777888888887765544443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.09  E-value=0.019  Score=49.74  Aligned_cols=88  Identities=16%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             HHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH-HHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845          103 LAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA-WSQMEMQQENNLAARQLFERAVQASPKN  181 (476)
Q Consensus       103 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~  181 (476)
                      |.++....|+++..|...+..-.+.|.+.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.+++..+|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            334444567777788877777777778888888888888888888887765 3445566778888888888888888888


Q ss_pred             HHHHHHHHH
Q 011845          182 RFAWHVWGI  190 (476)
Q Consensus       182 ~~~~~~l~~  190 (476)
                      |.+|...-.
T Consensus       176 p~iw~eyfr  184 (435)
T COG5191         176 PRIWIEYFR  184 (435)
T ss_pred             chHHHHHHH
Confidence            777765443

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.8  Score=43.71  Aligned_cols=51  Identities=10%  Similarity=-0.120  Sum_probs=23.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHH-HcCChhHHHHHHH
Q 011845          224 LLEYKYSTANLARKLFRRASEIDPR-HQPVWIAWGWMEW-KEGNLDTARELYE  274 (476)
Q Consensus       224 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~  274 (476)
                      ..+.+.|-+..|.++++-.++++|. +|.+...+..+|. +..+|+=-++.++
T Consensus       350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~  402 (665)
T KOG2422|consen  350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSN  402 (665)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3344455555555555555555554 4443333333332 3334444444333

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.59  Score=44.70  Aligned_cols=121  Identities=15%  Similarity=-0.070  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhcCcCcHHHHHH--HHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHH-HH
Q 011845           65 ARELFDASTVADKGHIAAWHG--WAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQ-AT  141 (476)
Q Consensus        65 A~~~~~~~~~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~  141 (476)
                      ++..+...+..++.++..+..  +...+...+....+.-.+...+..+|.+..++.+++......|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            344444444444444443322  244444445555555555555555555555555555555444443333333333 44


Q ss_pred             hcCCCchhHHHHH------HHHHHHhccHHHHHHHHHHHHHcCCCcHHHH
Q 011845          142 KCNPKSCASWIAW------SQMEMQQENNLAARQLFERAVQASPKNRFAW  185 (476)
Q Consensus       142 ~~~p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  185 (476)
                      ...|.+......+      +......|+..++...+.++....|.++.+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~  179 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL  179 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence            4445544433322      4444444555555555555555555554433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.03  E-value=0.48  Score=45.12  Aligned_cols=102  Identities=18%  Similarity=0.285  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 011845          185 WHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG  264 (476)
Q Consensus       185 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  264 (476)
                      ...++..+.+.|..+.|+.+.+        ++...+.++   .+.|+.+.|.+..+     ..+++..|..+|......|
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g  361 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcC
Confidence            4455555666666666555432        334444333   55666666655432     2234566666666666666


Q ss_pred             ChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845          265 NLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSS  313 (476)
Q Consensus       265 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  313 (476)
                      +++-|..+|+++-.           +..+..+|.-.|+.+.=.+..+.+
T Consensus       362 ~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  362 NIELAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             BHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHH
Confidence            66666666665421           223345555556554444444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.02  E-value=0.66  Score=44.42  Aligned_cols=120  Identities=18%  Similarity=0.005  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-
Q 011845          165 LAARQLFERAVQASPKNRFAWHV--WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR-  241 (476)
Q Consensus       165 ~~A~~~~~~a~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-  241 (476)
                      .-++..+...+..++.++.....  +...+...+....+...+...+..+|.+..+..+++......|....+...+.. 
T Consensus        48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~  127 (620)
T COG3914          48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI  127 (620)
T ss_pred             hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33555555555556666554332  345555556666666666666666666666666666666555555444444433 


Q ss_pred             HhccCCCCHHHHHHH------HHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845          242 ASEIDPRHQPVWIAW------GWMEWKEGNLDTARELYERALSIDSTTE  284 (476)
Q Consensus       242 ~~~~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~a~~~~~~~~  284 (476)
                      +....|.+......+      +......|+..++...++++....|.++
T Consensus       128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~  176 (620)
T COG3914         128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP  176 (620)
T ss_pred             HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence            555566655444333      5555666666666666666666666663

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.94  E-value=0.57  Score=36.39  Aligned_cols=69  Identities=10%  Similarity=-0.092  Sum_probs=26.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 011845          196 GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG  264 (476)
Q Consensus       196 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  264 (476)
                      ++.+++..++..+--+.|+.+.+-..-|.++...|++.+|+.+|+...+..+..+...-.++.|+..+|
T Consensus        24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            333333333333333334333333333444444444444444444433333333333333333333333

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.94  E-value=0.13  Score=53.65  Aligned_cols=133  Identities=17%  Similarity=0.152  Sum_probs=82.8

Q ss_pred             chhHHHHHHHHHhcCCHHHHHH------HHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------C
Q 011845           11 GRPYVALGKVLSKQSKVAEARA------IYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVA--------D   76 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~   76 (476)
                      .......|......|.+.+|.+      .+........|.....+..++.++...|++++|+..-.++.-.        .
T Consensus       932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen  932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence            3445556666667777776666      5554444434666777777777777778777777776665421        1


Q ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhcc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845           77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKF--------CGGNEYIYQTLALLEAKANRYEQARNLFRQATKC  143 (476)
Q Consensus        77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  143 (476)
                      |+....+..++...+..++...|...+.++...        .|.......++..++...++++.|+.+.+.++..
T Consensus      1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred             HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            333455566666666666766777666666543        2333445556666666666777777777766654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.90  E-value=0.77  Score=43.75  Aligned_cols=156  Identities=14%  Similarity=0.037  Sum_probs=77.5

Q ss_pred             HHHhcCCHHHHHHHHH--HhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHH
Q 011845           20 VLSKQSKVAEARAIYA--KGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIK   97 (476)
Q Consensus        20 ~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~   97 (476)
                      .....|+++++....+  +.+..-   .......++..+.+.|..+.|+.+.        .+++..+.++   .+.|+++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~~i---~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~  335 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLPNI---PKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLD  335 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HH
T ss_pred             HHHHcCChhhhhhhhhhhhhcccC---ChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHH
Confidence            3344677777666655  222111   2344566667777777777776543        2344444433   4667777


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 011845           98 KARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA  177 (476)
Q Consensus        98 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  177 (476)
                      .|.+..++.     +++..|..+|......|+++-|..+|+++-        -+..+..+|.-.|+.+.-.++.+.+...
T Consensus       336 ~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  336 IALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            776655432     356677777777777777777777777642        2234445566666655544444444333


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          178 SPKNRFAWHVWGIFEANMGFIDKGKKLLKI  207 (476)
Q Consensus       178 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  207 (476)
                      ...+     ..-.++...|+.++.++++.+
T Consensus       403 ~~~n-----~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  403 GDIN-----IAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             T-HH-----HHHHHHHHHT-HHHHHHHHHH
T ss_pred             cCHH-----HHHHHHHHcCCHHHHHHHHHH
Confidence            2211     112233344555555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.90  E-value=0.13  Score=43.46  Aligned_cols=66  Identities=26%  Similarity=0.409  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHcCChh-------HHHHHHHHHHccCCC---ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          251 PVWIAWGWMEWKEGNLD-------TARELYERALSIDST---TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~-------~A~~~~~~a~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                      .++..+|++|...|+.+       .|+..|+++++....   ......+++.+|.+..+.|++++|..+|.+++..
T Consensus       119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            44555666666666533       344444444443322   1122345566677777777777777777777654

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.87  E-value=0.029  Score=48.66  Aligned_cols=88  Identities=13%  Similarity=0.228  Sum_probs=61.2

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845          170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQS-LALLEYKYSTANLARKLFRRASEIDPR  248 (476)
Q Consensus       170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~~~~~  248 (476)
                      .|.++....|+++..|...+......|-+.+.-..|.+++..+|.+.+.|.. .+.-+...++++.+...|.+++..+|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            3444455567777777777777777777777777777777777777777765 344455667777777777777777777


Q ss_pred             CHHHHHHHH
Q 011845          249 HQPVWIAWG  257 (476)
Q Consensus       249 ~~~~~~~l~  257 (476)
                      +|.+|...-
T Consensus       175 ~p~iw~eyf  183 (435)
T COG5191         175 SPRIWIEYF  183 (435)
T ss_pred             CchHHHHHH
Confidence            777776543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.85  E-value=0.28  Score=36.17  Aligned_cols=55  Identities=15%  Similarity=0.205  Sum_probs=31.3

Q ss_pred             HHcCChhHHHHHHHHHHccCCCChh---H------HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845          261 WKEGNLDTARELYERALSIDSTTES---A------ARCLQAWGVLEQRVGNLSAARRLFRSSLN  315 (476)
Q Consensus       261 ~~~g~~~~A~~~~~~a~~~~~~~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~  315 (476)
                      ...|-|++|...+.++++....-+.   .      ..++..++..+..+|+|++++..-.++|.
T Consensus        20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~   83 (144)
T PF12968_consen   20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR   83 (144)
T ss_dssp             HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3456777777777777766433321   1      33455556666677777777766666654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.83  E-value=0.017  Score=31.41  Aligned_cols=28  Identities=14%  Similarity=0.330  Sum_probs=12.7

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 011845          291 QAWGVLEQRVGNLSAARRLFRSSLNINS  318 (476)
Q Consensus       291 ~~l~~~~~~~g~~~~A~~~~~~al~~~p  318 (476)
                      ..+|.++...|++++|..+|+++++..|
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            3344444444444444444444444443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=95.79  E-value=1.8  Score=40.92  Aligned_cols=94  Identities=12%  Similarity=0.007  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 011845          114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEA  193 (476)
Q Consensus       114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  193 (476)
                      ...+..+..++.....+.-...++.+++... .+..+++.++++|... ..++-..++++.++.+-++...-..++..|.
T Consensus        66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE  143 (711)
T COG1747          66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE  143 (711)
T ss_pred             chHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            3344444444444445555555566665553 3445566666666655 4455556666666666666555555555555


Q ss_pred             HcCCHHHHHHHHHHHHh
Q 011845          194 NMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       194 ~~~~~~~A~~~~~~~~~  210 (476)
                      . ++-..+..+|.+++.
T Consensus       144 k-ik~sk~a~~f~Ka~y  159 (711)
T COG1747         144 K-IKKSKAAEFFGKALY  159 (711)
T ss_pred             H-hchhhHHHHHHHHHH
Confidence            5 555566666665543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.75  E-value=0.26  Score=37.34  Aligned_cols=72  Identities=14%  Similarity=0.185  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHcC---ChhHHHHHHHHHHc-cCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH
Q 011845          251 PVWIAWGWMEWKEG---NLDTARELYERALS-IDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITW  324 (476)
Q Consensus       251 ~~~~~l~~~~~~~g---~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  324 (476)
                      ...+++++++....   +..+.+.+++..++ -.|+..  ...++.++..+.+.++|+.++.+....++..|++..+.
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r--Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR--RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc--hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            45566666665443   34456666666665 223222  33455566667777777777777777777777666543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.70  E-value=0.2  Score=41.00  Aligned_cols=100  Identities=19%  Similarity=0.087  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC--Chh-HHHHHH
Q 011845          218 LLQSLALLEYKYSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDST--TES-AARCLQ  291 (476)
Q Consensus       218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~-~~~~~~  291 (476)
                      ++..+|..|.+.|+.+.|++.|.++.......   .+.++.+..+....|++.....++.++-.....  +.. ...+-.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            44555555555566666666555555443221   234455555555666666666666555443211  111 112222


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845          292 AWGVLEQRVGNLSAARRLFRSSLNIN  317 (476)
Q Consensus       292 ~l~~~~~~~g~~~~A~~~~~~al~~~  317 (476)
                      .-|..+...++|.+|.+.|-.+....
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccCcCC
Confidence            33566666777777777776665443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.69  E-value=0.023  Score=30.86  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=8.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHh
Q 011845           52 WAVLENKLGNIGKARELFDAST   73 (476)
Q Consensus        52 la~~~~~~g~~~~A~~~~~~~~   73 (476)
                      +|.++...|++++|+..|++++
T Consensus         7 ~a~~~~~~~~~~~a~~~~~~~~   28 (34)
T smart00028        7 LGNAYLKLGDYDEALEYYEKAL   28 (34)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHH
Confidence            3333333333333333333333

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.60  E-value=0.51  Score=34.86  Aligned_cols=90  Identities=14%  Similarity=0.086  Sum_probs=52.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhccC---CCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-------hcCcCc
Q 011845           18 GKVLSKQSKVAEARAIYAKGSQAT---QGE--------NPYIWQCWAVLENKLGNIGKARELFDAST-------VADKGH   79 (476)
Q Consensus        18 a~~~~~~g~~~~A~~~~~~~~~~~---~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~-------~~~p~~   79 (476)
                      |.-.+..|-|++|...++++.+..   |+.        +...+-.++..+..+|+|++++...++++       +++.+.
T Consensus        16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde   95 (144)
T PF12968_consen   16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE   95 (144)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence            344566788888888888887532   221        23455667777788888887777666665       233333


Q ss_pred             HHHH----HHHHHHHHHhCCHHHHHHHHHHhh
Q 011845           80 IAAW----HGWAVLELRQGNIKKARQLLAKGL  107 (476)
Q Consensus        80 ~~~~----~~la~~~~~~~~~~~A~~~~~~~~  107 (476)
                      ...|    +..+..+...|+.++|+..|+.+-
T Consensus        96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            3333    345556666666666666666554

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=95.53  E-value=3.1  Score=41.93  Aligned_cols=52  Identities=12%  Similarity=-0.179  Sum_probs=39.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 011845          292 AWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRN  345 (476)
Q Consensus       292 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  345 (476)
                      ..+..+...|....|...+..++..  .+..-...++.+....|.++.++....
T Consensus       412 ~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~  463 (644)
T PRK11619        412 ARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI  463 (644)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence            3466777889999999999887765  335566778888888998888876654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.44  E-value=0.024  Score=46.88  Aligned_cols=56  Identities=16%  Similarity=0.287  Sum_probs=27.6

Q ss_pred             HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 011845           92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS  147 (476)
Q Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  147 (476)
                      +.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34444444455555555544444455555555555555555555555555554443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.41  E-value=0.21  Score=42.25  Aligned_cols=87  Identities=16%  Similarity=0.115  Sum_probs=59.8

Q ss_pred             CChhHHHHHHHHHHcc----CCCChhHHHHHHHHHHHHHHhCCHHH-------HHHHHHHHHhhC--CC----cHHHHHH
Q 011845          264 GNLDTARELYERALSI----DSTTESAARCLQAWGVLEQRVGNLSA-------ARRLFRSSLNIN--SQ----SYITWMT  326 (476)
Q Consensus       264 g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~-------A~~~~~~al~~~--p~----~~~~~~~  326 (476)
                      ..+++|++.|.-|+-.    ...+.....++..+|++|...|+.+.       |.+.|++++...  |.    ...+.+.
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            3566666666655432    23333456678889999999999554       555555555443  22    2357788


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhh
Q 011845          327 WAQLEEDQGNSVRAEEIRNLYFQQ  350 (476)
Q Consensus       327 l~~~~~~~g~~~~A~~~~~~~~~~  350 (476)
                      +|.+..+.|++++|...+.+++..
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcC
Confidence            999999999999999998888763

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.37  E-value=1.1  Score=35.76  Aligned_cols=121  Identities=12%  Similarity=0.052  Sum_probs=75.4

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCCh
Q 011845          193 ANMGFIDKGKKLLKIGHAVNPRDP--VLLQSLALLEYKYSTANLARKLFRRASEIDPRH----QPVWIAWGWMEWKEGNL  266 (476)
Q Consensus       193 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~  266 (476)
                      ...++.++|+..|...-+..-...  .+....+.+....|+...|+..|..+-...|--    ..+...-+.++...|-|
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            345666777777776655544332  345566777777888888888887766544321    12344556667777777


Q ss_pred             hHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845          267 DTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLN  315 (476)
Q Consensus       267 ~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  315 (476)
                      ++-....+..-  .+.++.....-..+|..-.+.|++.+|..+|.+...
T Consensus       149 ~dV~srvepLa--~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         149 DDVSSRVEPLA--GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhhhcc--CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            77665555432  223333333445567778888888888888887665

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=95.35  E-value=2.6  Score=39.89  Aligned_cols=78  Identities=13%  Similarity=-0.043  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845           62 IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT  141 (476)
Q Consensus        62 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  141 (476)
                      ..-..-++.+++... .+..+++.++.+|... ..++-..++++..+.+-++...-..++..|.+ ++...+..+|.+++
T Consensus        82 ~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~  158 (711)
T COG1747          82 NQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL  158 (711)
T ss_pred             HHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence            333334444444332 2334444555555444 33344444455544444444444444444443 44445555555544


Q ss_pred             h
Q 011845          142 K  142 (476)
Q Consensus       142 ~  142 (476)
                      .
T Consensus       159 y  159 (711)
T COG1747         159 Y  159 (711)
T ss_pred             H
Confidence            3

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.30  E-value=0.029  Score=46.49  Aligned_cols=56  Identities=16%  Similarity=0.152  Sum_probs=29.1

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 011845          194 NMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH  249 (476)
Q Consensus       194 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  249 (476)
                      ..++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34455555555555555555555555555555555555555555555555555543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.26  E-value=0.51  Score=35.82  Aligned_cols=75  Identities=11%  Similarity=-0.072  Sum_probs=49.2

Q ss_pred             CChHHHHHHHHHHHHcC---CHHHHHHHHHHHhh-cCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHH
Q 011845           44 ENPYIWQCWAVLENKLG---NIGKARELFDASTV-ADKGH-IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQ  118 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~-~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  118 (476)
                      .+....+.++.++....   +..+.+.+++..+. ..|.. -+..+.++..+++.++|+.++.+++..++..|++.++..
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            34556666777776544   34566777777775 33432 356667777777777777777777777777777766543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.14  E-value=0.4  Score=50.28  Aligned_cols=164  Identities=20%  Similarity=0.174  Sum_probs=121.9

Q ss_pred             HHHHHHHHHcCCHHHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------CCCH
Q 011845          186 HVWGIFEANMGFIDKGKK------LLK-IGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID--------PRHQ  250 (476)
Q Consensus       186 ~~l~~~~~~~~~~~~A~~------~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~  250 (476)
                      ...+......|.+.+|.+      ++. ..-...|.....+..++.++...|+.++|+..-.++.-+.        |+..
T Consensus       936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen  936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence            445555666777777777      444 2334567778899999999999999999999888776442        4455


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHcc-----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-----CC-
Q 011845          251 PVWIAWGWMEWKEGNLDTARELYERALSI-----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN-----SQ-  319 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~-  319 (476)
                      ..+.+++...+..++...|+..+.++..+     .|+.+....+..+++.++...++++.|+.+.+.|+..+     |. 
T Consensus      1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred             HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence            67788888888888999999998888764     45566666667788888899999999999999998864     22 


Q ss_pred             --cHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          320 --SYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       320 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                        ....+..++++....+++..|....+....
T Consensus      1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred             hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence              234566777777777777777666554443

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.89  E-value=2.3  Score=36.91  Aligned_cols=198  Identities=11%  Similarity=-0.003  Sum_probs=116.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhccCCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHh---hc--CcCcHHH
Q 011845           15 VALGKVLSKQSKVAEARAIYAKGSQATQGE-------NPYIWQCWAVLENKLGNIGKARELFDAST---VA--DKGHIAA   82 (476)
Q Consensus        15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~--~p~~~~~   82 (476)
                      ..+|+-....+++++|+..|.+++..+...       .......++.+|...|++..-.+......   ..  .|.....
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            667888889999999999999998764222       23466788999999998775544443322   11  1222222


Q ss_pred             HHHHHHHH-HHhCCHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCchh
Q 011845           83 WHGWAVLE-LRQGNIKKARQLLAKGLKFCGGN------EYIYQTLALLEAKANRYEQARNLFRQATKC------NPKSCA  149 (476)
Q Consensus        83 ~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~  149 (476)
                      ...+...+ .....++.-+.++...++.....      ...-..++.++++.|+|.+|+......+.-      .+.-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            22222221 12334555555555555432211      122345677788888888888777665532      133445


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHc-----CCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845          150 SWIAWSQMEMQQENNLAARQLFERAVQA-----SPKNRFA--WHVWGIFEANMGFIDKGKKLLKIGHAVN  212 (476)
Q Consensus       150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~  212 (476)
                      ++..-..+|....+..++...+..+-..     .|....+  -..-|...+...+|..|-.+|-++++-.
T Consensus       167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence            6666667777777777776666555432     2322222  2233455566677778887777776643

>PF13041 PPR_2: PPR repeat family

Probab=94.88  E-value=0.12  Score=31.99  Aligned_cols=47  Identities=17%  Similarity=0.118  Sum_probs=29.9

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLE   56 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~   56 (476)
                      |...|..+...+.+.|++++|.++|+++.+.+-+.+...+..+...+
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~   48 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL   48 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            34456666677777777777777777777665555666655554443

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=3.3  Score=37.05  Aligned_cols=267  Identities=14%  Similarity=0.030  Sum_probs=135.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhcc--CCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---Cc--CcH
Q 011845           15 VALGKVLSKQSKVAEARAIYAKGSQA--TQGEN-------PYIWQCWAVLENKLGNIGKARELFDASTVA---DK--GHI   80 (476)
Q Consensus        15 ~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p--~~~   80 (476)
                      ...+.......++++++.+|.+++..  .+..+       ......++..+.+.|+..+-.......-..   -+  ...
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa   87 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA   87 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence            55666677778889999999998863  21122       235677889999999888766666554211   11  111


Q ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHhhccCCCcH------HHHHHHHHHHHHhccHHHHHHHHHHHHhc----C--CCc
Q 011845           81 AAWHGWAVLEL-RQGNIKKARQLLAKGLKFCGGNE------YIYQTLALLEAKANRYEQARNLFRQATKC----N--PKS  147 (476)
Q Consensus        81 ~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~--p~~  147 (476)
                      .....+..... ..+..+.-+.++..+++......      ..-..++.+|...++|.+|+......++-    +  +.-
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL  167 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL  167 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence            11222222221 12333344444444444322111      12345667777777777777766655432    1  122


Q ss_pred             hhHHHHHHHHHHHhccHHHHHHHHHHHHHcC-----CCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHH
Q 011845          148 CASWIAWSQMEMQQENNLAARQLFERAVQAS-----PKNR--FAWHVWGIFEANMGFIDKGKKLLKIGHAVNP---RDPV  217 (476)
Q Consensus       148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~  217 (476)
                      .+++..-...|....+..+|...+..|-...     |...  .+-..-|.++....+|..|..+|-++++-..   ++..
T Consensus       168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~  247 (411)
T KOG1463|consen  168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK  247 (411)
T ss_pred             eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence            3445555566666777777766666554321     2111  1122334455555677777777766665332   1122


Q ss_pred             HHH---HHHHHHHHcCCHHHHHHHH--HHHhccCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHccCC
Q 011845          218 LLQ---SLALLEYKYSTANLARKLF--RRASEIDPRHQPVWIAWGWMEWK--EGNLDTARELYERALSIDS  281 (476)
Q Consensus       218 ~~~---~la~~~~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~  281 (476)
                      +..   .+-.+-...+..++.-.++  +.+++....+..+....+.++.+  ..+|+.|+.-|..-+..+|
T Consensus       248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence            221   1222222334444332222  23444444445555555555543  3455566655555554433

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.55  E-value=0.97  Score=43.74  Aligned_cols=97  Identities=13%  Similarity=0.020  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHccCCCCh---hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 011845          253 WIAWGWMEWKEGNLDTARELYERALSIDSTTE---SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQ  329 (476)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  329 (476)
                      +.+-+.-+++..+|..++++|...+...|.+.   ........++.||..+.+.+.|.+++++|-+.+|.++-.......
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            34456667788999999999999988766553   235566778999999999999999999999999999988888888


Q ss_pred             HHHHcCChHHHHHHHHHHHh
Q 011845          330 LEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       330 ~~~~~g~~~~A~~~~~~~~~  349 (476)
                      +....|.-++|.........
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s  456 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKS  456 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHh
Confidence            88889999999888766655

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=3.6  Score=40.08  Aligned_cols=91  Identities=13%  Similarity=0.022  Sum_probs=57.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 011845          189 GIFEANMGFIDKGKKLLKIGHAVNPRDP------VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK  262 (476)
Q Consensus       189 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (476)
                      +.-.++..+|..+++.|...+...|.+.      .....++.+|....+.+.|.++++++-+.+|.++.....+-.+...
T Consensus       361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~  440 (872)
T KOG4814|consen  361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA  440 (872)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            4445556666667777766666555442      2445566666666677777777777776666666666666666666


Q ss_pred             cCChhHHHHHHHHHHcc
Q 011845          263 EGNLDTARELYERALSI  279 (476)
Q Consensus       263 ~g~~~~A~~~~~~a~~~  279 (476)
                      .|.-++|+.+.......
T Consensus       441 E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  441 EDKSEEALTCLQKIKSS  457 (872)
T ss_pred             hcchHHHHHHHHHHHhh
Confidence            66666666666655543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.49  E-value=7.4  Score=40.88  Aligned_cols=97  Identities=13%  Similarity=-0.010  Sum_probs=75.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcH---HHHHHHHHHHHHh----C---CHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHI---AAWHGWAVLELRQ----G---NIKKARQLLAKGLKFCGGNEYIYQTLAL  122 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~----~---~~~~A~~~~~~~~~~~p~~~~~~~~la~  122 (476)
                      -.++.....|+.|+..|+++-...|...   ++.+..|.....+    |   .+++|+..|++.- -.|..+--|...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence            4566778889999999999998888654   6667777766543    2   4667777777653 34566777888899


Q ss_pred             HHHHhccHHHHHHHHHHHHhcCCCchhH
Q 011845          123 LEAKANRYEQARNLFRQATKCNPKSCAS  150 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~  150 (476)
                      +|..+|++++-++.|.-+++..|..|..
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            9999999999999999999999888764

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.49  E-value=0.63  Score=38.34  Aligned_cols=76  Identities=22%  Similarity=0.096  Sum_probs=57.0

Q ss_pred             cCCHHHHHHHHHHHhhcC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCC----cHHHHHHHHHHHHHhccHHHH
Q 011845           59 LGNIGKARELFDASTVAD-KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG----NEYIYQTLALLEAKANRYEQA  133 (476)
Q Consensus        59 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A  133 (476)
                      .-.-+.|...|-++-... -++++..+.+|..|. ..+.++++.++.++++..+.    +++++..|+.++...|+++.|
T Consensus       119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            334467777777654322 245777888888776 67889999999999987543    588999999999999999988


Q ss_pred             HH
Q 011845          134 RN  135 (476)
Q Consensus       134 ~~  135 (476)
                      --
T Consensus       198 Yi  199 (203)
T PF11207_consen  198 YI  199 (203)
T ss_pred             hh
Confidence            53

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.43  E-value=0.15  Score=47.75  Aligned_cols=91  Identities=13%  Similarity=0.008  Sum_probs=75.9

Q ss_pred             HcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh---CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHH
Q 011845           58 KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ---GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR  134 (476)
Q Consensus        58 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  134 (476)
                      ..+....|+..|.++++..|.....+.+.+.++++.   |+.-.|+.-...+++++|....+++.++.++...+++.+|+
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal  465 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL  465 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence            345667788889999888888888888888888765   46667888888899999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCch
Q 011845          135 NLFRQATKCNPKSC  148 (476)
Q Consensus       135 ~~~~~~~~~~p~~~  148 (476)
                      .....+....|.+.
T Consensus       466 ~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  466 SCHWALQMSFPTDV  479 (758)
T ss_pred             hhHHHHhhcCchhh
Confidence            99888888888554

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.33  E-value=0.34  Score=32.86  Aligned_cols=54  Identities=13%  Similarity=0.071  Sum_probs=34.1

Q ss_pred             HHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845          260 EWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSS  313 (476)
Q Consensus       260 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  313 (476)
                      ++...+.++|+..++++++..++.+....++-.+..+|...|++.+.+++--.-
T Consensus        16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen   16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666777777777666666655556666666666667666666655443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.31  E-value=0.12  Score=30.30  Aligned_cols=28  Identities=21%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                      ++.++|.+|...|++++|..++++++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4566677777777777777777777654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.26  E-value=0.22  Score=46.76  Aligned_cols=87  Identities=13%  Similarity=0.051  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHH
Q 011845           95 NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA---NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLF  171 (476)
Q Consensus        95 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  171 (476)
                      ....|+..|.++++..|.....+.+.+.++++.   |+.-.|+.-...+++++|....+|+.|++++...+++.+|+.+.
T Consensus       389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~  468 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH  468 (758)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence            345566666666666666666666655555543   34444555555556666666666666666666666666666665


Q ss_pred             HHHHHcCCCc
Q 011845          172 ERAVQASPKN  181 (476)
Q Consensus       172 ~~a~~~~~~~  181 (476)
                      ..+....|.+
T Consensus       469 ~alq~~~Ptd  478 (758)
T KOG1310|consen  469 WALQMSFPTD  478 (758)
T ss_pred             HHHhhcCchh
Confidence            5555555543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.93  E-value=0.29  Score=35.23  Aligned_cols=57  Identities=16%  Similarity=0.287  Sum_probs=37.5

Q ss_pred             HHcCChhHHHHHHHHHHccCCCCh------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845          261 WKEGNLDTARELYERALSIDSTTE------SAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN  317 (476)
Q Consensus       261 ~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  317 (476)
                      .+.|+|..|++.+.+.+.......      .....+.+++.++...|++++|+..+++++.+.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            456777777777777665532221      223345667777888888888888888887663

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=93.78  E-value=8.4  Score=38.85  Aligned_cols=225  Identities=14%  Similarity=0.072  Sum_probs=90.3

Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH---HH---HH
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA---LL---EY  227 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la---~~---~~  227 (476)
                      +..++.-.|+|+.|+.++-+    .+.+..--..+|.++...|-.......-...+...+.++.. .+++   ..   .+
T Consensus       264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F  338 (613)
T PF04097_consen  264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSF  338 (613)
T ss_dssp             HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTT
T ss_pred             HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHH
Confidence            34667778888888888766    22222111233333333333222222224444444443221 2222   12   23


Q ss_pred             HcCCHHHHHHHHHHHhccC-CCCHH-HHHHHHHHHHHcCCh--------------hHHHHHHHHHHccCCCChhHHHHHH
Q 011845          228 KYSTANLARKLFRRASEID-PRHQP-VWIAWGWMEWKEGNL--------------DTARELYERALSIDSTTESAARCLQ  291 (476)
Q Consensus       228 ~~~~~~~A~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~--------------~~A~~~~~~a~~~~~~~~~~~~~~~  291 (476)
                      ...+..+|.++|--+-... |.... .+..+..+....+++              .-.++-..+.+...........+..
T Consensus       339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~  418 (613)
T PF04097_consen  339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE  418 (613)
T ss_dssp             TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence            4567777877776544332 22211 222233333333322              2233333334444545555556666


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhhhh-------
Q 011845          292 AWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGN-----------SVRAEEIRNLYFQQRTE-------  353 (476)
Q Consensus       292 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~-------  353 (476)
                      ..|.-....|++++|+..|.-+-+.+.--...-..|+.+......           ...|..+.+.+......       
T Consensus       419 ~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~  498 (613)
T PF04097_consen  419 QAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK  498 (613)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence            677777888888888888775532211111122333444433333           22333333333221110       


Q ss_pred             ------hcc--hhhhhhhhcccchHHHHHHHHHhccccC
Q 011845          354 ------VVD--DASWVMGFMDIIDPALDRIKQLLNLEKS  384 (476)
Q Consensus       354 ------~~~--~~~~~~~~~g~~~~A~~~~~~al~~~p~  384 (476)
                            .+.  .....++..|++++|++.+++.- +-|.
T Consensus       499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~-liP~  536 (613)
T PF04097_consen  499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD-LIPL  536 (613)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT--S-S
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC
Confidence                  011  12235567789999999887753 5563

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.77  E-value=0.13  Score=30.20  Aligned_cols=29  Identities=28%  Similarity=0.244  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845          251 PVWIAWGWMEWKEGNLDTARELYERALSI  279 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  279 (476)
                      .++.++|.+|...|++++|..++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677888888888888888888887764

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.73  E-value=4.3  Score=37.40  Aligned_cols=131  Identities=13%  Similarity=0.164  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhhcCcCcHHHHHHHHHHHH------------HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc--
Q 011845           63 GKARELFDASTVADKGHIAAWHGWAVLEL------------RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN--  128 (476)
Q Consensus        63 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--  128 (476)
                      +++++.=.+.+..+|+...+|...-.++.            ++.-+++-+.+...+++.+|++..+|.....++.+.+  
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            34555555666666666555553222221            1123444555666666666666666666666666554  


Q ss_pred             cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh----ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 011845          129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ----ENNLAARQLFERAVQASPKNRFAWHVWGIFEA  193 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  193 (476)
                      ++..-+++.+++++.+|.+-.+|...=.+....    ....+=+.+..+++..++.+..+|.....++.
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            345666666667766666666554433332222    12344455666666666666666665555443

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.71  E-value=4.8  Score=35.84  Aligned_cols=22  Identities=14%  Similarity=0.052  Sum_probs=17.1

Q ss_pred             hHHHHHHHHHhccccCCCCCCC
Q 011845          369 DPALDRIKQLLNLEKSSYKEPS  390 (476)
Q Consensus       369 ~~A~~~~~~al~~~p~~~~~~~  390 (476)
                      ..|++.+.++++.+|..|.-..
T Consensus       379 ~~AvEAihRAvEFNPHVPkYLL  400 (556)
T KOG3807|consen  379 INAVEAIHRAVEFNPHVPKYLL  400 (556)
T ss_pred             HHHHHHHHHHhhcCCCCcHHHH
Confidence            3578889999999998776543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.68  E-value=0.13  Score=26.62  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=13.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHH
Q 011845           13 PYVALGKVLSKQSKVAEARAIYA   35 (476)
Q Consensus        13 ~~~~la~~~~~~g~~~~A~~~~~   35 (476)
                      +.+.+|..+...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45556666666666666665554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.36  E-value=4.3  Score=37.41  Aligned_cols=165  Identities=18%  Similarity=0.183  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHH------------HHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc-
Q 011845           97 KKARQLLAKGLKFCGGNEYIYQTLALLE------------AKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN-  163 (476)
Q Consensus        97 ~~A~~~~~~~~~~~p~~~~~~~~la~~~------------~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-  163 (476)
                      .++++.=.+.+..+|+...+|...-.++            .+..-.++-+.+...+++.+|++..+|+....++.+.+. 
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            3556666666677776665554322222            222356677788888999999999999999998887653 


Q ss_pred             -HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------cCC-
Q 011845          164 -NLAARQLFERAVQASPKNRFAWHVWGIFEANM----GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK------YST-  231 (476)
Q Consensus       164 -~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~-  231 (476)
                       +..=+.+.+++++.+|.+...|...=.+....    ....+=+++..+++..++.+..+|.....++..      .|+ 
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~  205 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF  205 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence             57788889999999998877765443333222    234566778888888888888888777666552      231 


Q ss_pred             -----HHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 011845          232 -----ANLARKLFRRASEIDPRHQPVWIAWGWMEW  261 (476)
Q Consensus       232 -----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (476)
                           ...-.+....++-.+|++..+|+..-+.+.
T Consensus       206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~  240 (421)
T KOG0529|consen  206 MPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG  240 (421)
T ss_pred             CCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence                 233455566677788988888877544443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.06  E-value=1.6  Score=35.99  Aligned_cols=72  Identities=14%  Similarity=0.030  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHcCCHHHHH
Q 011845          130 YEQARNLFRQATKCN-PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK----NRFAWHVWGIFEANMGFIDKGK  202 (476)
Q Consensus       130 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~  202 (476)
                      -++|...|-++-... -++++..+.+|..|. ..+.++|+.++.+++++.+.    +++++..++.++..+|+++.|-
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            345555555543322 245666666766665 45677777777777776533    3677777777777777777664

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.01  E-value=1  Score=39.62  Aligned_cols=64  Identities=9%  Similarity=0.082  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 011845          114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA  177 (476)
Q Consensus       114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  177 (476)
                      ..++..++..+...|+++.++..+++.+..+|-+...|..+...|...|+...|+..|++.-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4567777888888888888888888888888888888888888888888888888888877663

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.01  E-value=0.9  Score=39.34  Aligned_cols=67  Identities=15%  Similarity=0.042  Sum_probs=50.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845          220 QSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA  286 (476)
Q Consensus       220 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  286 (476)
                      .++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|++.++..++..|+.+..
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            3444556677777888888888888888877777777888888888888888888877777777655

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.99  E-value=0.85  Score=40.05  Aligned_cols=65  Identities=20%  Similarity=0.107  Sum_probs=54.0

Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845           79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKC  143 (476)
Q Consensus        79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  143 (476)
                      ...++..++..+...|+++.++..+++.+..+|.+...|..+...|...|+...|+..|+++-+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45667778888888888888888888888888888888888888888888888888888887664

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=92.69  E-value=1  Score=38.96  Aligned_cols=61  Identities=13%  Similarity=0.025  Sum_probs=30.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 011845          191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP  251 (476)
Q Consensus       191 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  251 (476)
                      .+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..++..++..|+++.
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            3444444555555555555555555544444555555555555555555554444444443

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=92.31  E-value=6.9  Score=33.85  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHHc-----cCCCChhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHh
Q 011845          267 DTARELYERALS-----IDSTTESAARCLQAWGVLEQ-RVGNLSAARRLFRSSLN  315 (476)
Q Consensus       267 ~~A~~~~~~a~~-----~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~  315 (476)
                      +.|...|++|+.     +.|.+|....+..+.+..++ ..|+.++|++..++++.
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            344445544443     35666655555555555543 36777777776666654

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.18  E-value=0.46  Score=25.77  Aligned_cols=31  Identities=26%  Similarity=0.643  Sum_probs=24.3

Q ss_pred             CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845          301 GNLSAARRLFRSSLNINSQSYITWMTWAQLE  331 (476)
Q Consensus       301 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  331 (476)
                      |+.+.|...|++++...|.++.+|..++...
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e   31 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFE   31 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            4677888888888888888888888777654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.04  E-value=0.96  Score=32.53  Aligned_cols=55  Identities=11%  Similarity=0.102  Sum_probs=32.9

Q ss_pred             HHcCCHHHHHHHHHHHhccCCC---------CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845          227 YKYSTANLARKLFRRASEIDPR---------HQPVWIAWGWMEWKEGNLDTARELYERALSIDS  281 (476)
Q Consensus       227 ~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  281 (476)
                      .+.|++..|++.+.+.+.....         ...+..++|.++...|++++|+..+++++++..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3455555555555544433211         124556677777778888888888888777643

>PF12854 PPR_1: PPR repeat

Probab=92.00  E-value=0.41  Score=26.65  Aligned_cols=28  Identities=25%  Similarity=0.252  Sum_probs=17.2

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845           44 ENPYIWQCWAVLENKLGNIGKARELFDA   71 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~   71 (476)
                      .|...|..+...+.+.|+.++|.++|++
T Consensus         5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    5 PDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            3555566666666666666666666654

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.92  E-value=10  Score=34.96  Aligned_cols=126  Identities=12%  Similarity=0.033  Sum_probs=68.3

Q ss_pred             HHHhccHHHHHHHHHHHHHcC-CC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-CHHHHHHH
Q 011845          158 EMQQENNLAARQLFERAVQAS-PK--------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN-----PR-DPVLLQSL  222 (476)
Q Consensus       158 ~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~-~~~~~~~l  222 (476)
                      +..+.++.+|..+-+..+..- -.        ....|+.+..++...|+...-...+...+...     .. .....+.+
T Consensus       136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L  215 (493)
T KOG2581|consen  136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL  215 (493)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence            334577777777666554321 11        13455666666666666555555554443321     11 12234445


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhcc--CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845          223 ALLEYKYSTANLARKLFRRASEI--DP--RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT  283 (476)
Q Consensus       223 a~~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  283 (476)
                      -..|...+.++.|.....+..--  ..  .....++.+|.+..-+++|..|.+++-+++...|.+
T Consensus       216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            56666666666666665554311  11  112344556666666777777777777777776663

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=91.89  E-value=8.1  Score=33.76  Aligned_cols=283  Identities=11%  Similarity=-0.025  Sum_probs=147.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCc--------CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhc---c--CCCcHHH
Q 011845           50 QCWAVLENKLGNIGKARELFDASTVADK--------GHIAAWHGWAVLELRQGNIKKARQLLAKGLK---F--CGGNEYI  116 (476)
Q Consensus        50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~--~p~~~~~  116 (476)
                      ..+|.-..+.+++++|+..|.+++...-        ....+...++.+|...|++..-.+......+   .  .|....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            4567777889999999999999986521        1235677899999999987655444433221   1  1122222


Q ss_pred             HHHHHHHH-HHhccHHHHHHHHHHHHhcCCCch------hHHHHHHHHHHHhccHHHHHHHHHHHHHc------CCCcHH
Q 011845          117 YQTLALLE-AKANRYEQARNLFRQATKCNPKSC------ASWIAWSQMEMQQENNLAARQLFERAVQA------SPKNRF  183 (476)
Q Consensus       117 ~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~  183 (476)
                      ...+...+ .....++.-+..+...++......      ..-..++.++++.|+|.+|+......+..      .+.-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            22222111 122344445555555444322111      12345667788888999888887766542      123345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHhccCC---CCHHHH
Q 011845          184 AWHVWGIFEANMGFIDKGKKLLKIGHAV-----NPRDPVLL--QSLALLEYKYSTANLARKLFRRASEIDP---RHQPVW  253 (476)
Q Consensus       184 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~  253 (476)
                      ++..-..+|....+..++...+..+-..     +|....+-  ..-|...+...+|.-|..+|-++++-..   .+..+.
T Consensus       167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc  246 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC  246 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence            5566667777777777777666655332     33222221  2234555666788888888888876543   223332


Q ss_pred             HHHHHH---HHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 011845          254 IAWGWM---EWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQ--RVGNLSAARRLFRSSLNINSQSYITWMTWA  328 (476)
Q Consensus       254 ~~l~~~---~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  328 (476)
                      ..+-.+   -...+..++-...+..--.+..-.....+++...+..+.  .+.+|..|...|..-+..+|--..-+..+-
T Consensus       247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LY  326 (421)
T COG5159         247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLY  326 (421)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHH
Confidence            222111   112233333333332111111111111233444444442  344677787777776665554333333344


Q ss_pred             HHHH
Q 011845          329 QLEE  332 (476)
Q Consensus       329 ~~~~  332 (476)
                      ..+.
T Consensus       327 D~LL  330 (421)
T COG5159         327 DVLL  330 (421)
T ss_pred             HHHH
Confidence            4333

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.69  E-value=0.34  Score=25.02  Aligned_cols=21  Identities=19%  Similarity=0.077  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHH
Q 011845           49 WQCWAVLENKLGNIGKARELF   69 (476)
Q Consensus        49 ~~~la~~~~~~g~~~~A~~~~   69 (476)
                      ...+|.++...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            344455555555555554444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.65  E-value=2  Score=35.80  Aligned_cols=73  Identities=11%  Similarity=-0.067  Sum_probs=54.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q 011845          224 LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVL  296 (476)
Q Consensus       224 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~  296 (476)
                      .-+.+.+...+|+...+.-++..|.+......+-.+++-.|++++|..-++-+-++.|+......+|.++..+
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3456667788888888888888888887777788888888888888888888888888776665555544443

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=91.54  E-value=38  Score=40.73  Aligned_cols=116  Identities=13%  Similarity=0.227  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-HHHHHH---HHHHHHHcC-ChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845          218 LLQSLALLEYKYSTANLARKLFRRASEIDPRH-QPVWIA---WGWMEWKEG-NLDTARELYERALSIDSTTESAARCLQA  292 (476)
Q Consensus       218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~---l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~  292 (476)
                      +.+..|.+..+.|-++-++..+.+...+..-. .++...   -+.+|.... ....+++..+..--.+-.+......+..
T Consensus      2738 ~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~l 2817 (3550)
T KOG0889|consen 2738 AINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTL 2817 (3550)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHh
Confidence            44556666677777777777777766553221 122222   233333322 4444444444332222233344566777


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 011845          293 WGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED  333 (476)
Q Consensus       293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  333 (476)
                      -|....+.|+.++|-..|..|++++...+.+|..+|.....
T Consensus      2818 kG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2818 KGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred             hhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            79999999999999999999999998888888888876543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.52  E-value=1.2  Score=40.89  Aligned_cols=88  Identities=17%  Similarity=0.106  Sum_probs=59.6

Q ss_pred             HHHHHHhCCHHHHHHHHHHhhccCC--------C-----c-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch
Q 011845           87 AVLELRQGNIKKARQLLAKGLKFCG--------G-----N-----EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC  148 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~~p--------~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  148 (476)
                      |..++++++|..|..-|..++++..        .     +     ..+...+..||..+++.+-|+....+.+..+|...
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            4455566666666666666655421        1     1     12345677788888888888888888888888877


Q ss_pred             hHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845          149 ASWIAWSQMEMQQENNLAARQLFERA  174 (476)
Q Consensus       149 ~~~~~la~~~~~~~~~~~A~~~~~~a  174 (476)
                      .-+...|.++....+|.+|.+.+.-+
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777788888888887776655443

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=91.25  E-value=9.9  Score=33.49  Aligned_cols=27  Identities=26%  Similarity=0.223  Sum_probs=18.3

Q ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHH
Q 011845          112 GNEYIYQTLALLEAKANRYEQARNLFR  138 (476)
Q Consensus       112 ~~~~~~~~la~~~~~~g~~~~A~~~~~  138 (476)
                      .++..+..+|..+.+.|++.+|..+|-
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            467788888888888887777776663

; PDB: 3LKU_E 2WPV_G.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=91.22  E-value=11  Score=33.89  Aligned_cols=189  Identities=16%  Similarity=0.126  Sum_probs=99.1

Q ss_pred             cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845          129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIG  208 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  208 (476)
                      --++|+.+-.-...+.|..++++-.++.++.+..+...=...=-..+-+...+...|.        .+-.+++...+.++
T Consensus       211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~--------r~lI~eg~all~rA  282 (415)
T COG4941         211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWD--------RALIDEGLALLDRA  282 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhh--------HHHHHHHHHHHHHH
Confidence            3567777777778888888888877777665543221000000000111112222332        12235566666666


Q ss_pred             HhcCCCCH-HHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845          209 HAVNPRDP-VLLQSLALLEYK-----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       209 ~~~~~~~~-~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                      +.....-+ ...-.++.++..     .-+|..-..+|+-.....|+ |.+-.+.+.......-...++...+..... |.
T Consensus       283 ~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~-~~  360 (415)
T COG4941         283 LASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLAR-PR  360 (415)
T ss_pred             HHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcc-cc
Confidence            65443222 222223333322     23555566666666666554 344445555555555556666666554443 22


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 011845          283 TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTW  327 (476)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  327 (476)
                      -......+...|.++.++|+.++|...|++++.+.++..+..+..
T Consensus       361 L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~  405 (415)
T COG4941         361 LDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR  405 (415)
T ss_pred             cccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence            222222344557788888888888888888888877766544433

>PF13041 PPR_2: PPR repeat family

Probab=91.05  E-value=1.4  Score=27.02  Aligned_cols=21  Identities=33%  Similarity=0.466  Sum_probs=7.9

Q ss_pred             HHHHHHHhccHHHHHHHHHHH
Q 011845          120 LALLEAKANRYEQARNLFRQA  140 (476)
Q Consensus       120 la~~~~~~g~~~~A~~~~~~~  140 (476)
                      +...+.+.|++++|.++|+++
T Consensus         9 li~~~~~~~~~~~a~~l~~~M   29 (50)
T PF13041_consen    9 LISGYCKAGKFEEALKLFKEM   29 (50)
T ss_pred             HHHHHHHCcCHHHHHHHHHHH
Confidence            333333333333333333333

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.05  E-value=1.8  Score=29.49  Aligned_cols=55  Identities=11%  Similarity=0.072  Sum_probs=27.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHH---HHHHHHHHcCCHHHHHHHHH
Q 011845           15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQ---CWAVLENKLGNIGKARELFD   70 (476)
Q Consensus        15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~   70 (476)
                      ...|.-++.+.+.++|+..++++++.. ++.+.-+.   .+..++...|+|.+.+.+..
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~-~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKI-TDREDRFRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555666666666665544 33333332   23344555555555555443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.87  E-value=0.85  Score=25.80  Aligned_cols=18  Identities=17%  Similarity=0.004  Sum_probs=6.7

Q ss_pred             HHHHHHHHcCCHHHHHHH
Q 011845           51 CWAVLENKLGNIGKAREL   68 (476)
Q Consensus        51 ~la~~~~~~g~~~~A~~~   68 (476)
                      .+|..+...|++++|+..
T Consensus         6 ~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    6 GLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHH
Confidence            333333334444444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.52  E-value=1.1  Score=25.35  Aligned_cols=19  Identities=11%  Similarity=-0.099  Sum_probs=7.5

Q ss_pred             HHHHHHHHHhccHHHHHHH
Q 011845          152 IAWSQMEMQQENNLAARQL  170 (476)
Q Consensus       152 ~~la~~~~~~~~~~~A~~~  170 (476)
                      ..+|-.+...|++++|+..
T Consensus         5 y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    5 YGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHH
Confidence            3334444444444444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.42  E-value=1.7  Score=39.92  Aligned_cols=86  Identities=12%  Similarity=-0.041  Sum_probs=47.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhccC-------CCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH
Q 011845           18 GKVLSKQSKVAEARAIYAKGSQAT-------QGEN----------PYIWQCWAVLENKLGNIGKARELFDASTVADKGHI   80 (476)
Q Consensus        18 a~~~~~~g~~~~A~~~~~~~~~~~-------~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~   80 (476)
                      |..++++++|..|..-|..+++..       .|..          ..+-..+..||.++++.+-|+....+.+..+|...
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            445566666666666555555432       1111          11223455666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLL  103 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~  103 (476)
                      .-+...|.++..+.+|.+|...+
T Consensus       263 rnHLrqAavfR~LeRy~eAarSa  285 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSA  285 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666555433

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.05  E-value=12  Score=32.63  Aligned_cols=57  Identities=9%  Similarity=-0.018  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCChHHHHHH
Q 011845          287 ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ------SYITWMTWAQLEEDQGNSVRAEEI  343 (476)
Q Consensus       287 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~  343 (476)
                      ..+...+|..|+..|++++|.++|+.+......      ...+...+..|....|+.+....+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~  240 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT  240 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            445556778888888888888888877554322      124556677777777776665543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.79  E-value=25  Score=35.83  Aligned_cols=25  Identities=8%  Similarity=0.178  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhh
Q 011845           83 WHGWAVLELRQGNIKKARQLLAKGL  107 (476)
Q Consensus        83 ~~~la~~~~~~~~~~~A~~~~~~~~  107 (476)
                      ....|..++..|++++|...|-+.+
T Consensus       371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI  395 (933)
T KOG2114|consen  371 HRKYGDYLYGKGDFDEATDQYIETI  395 (933)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHc
Confidence            3344444555555555555554444

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=89.73  E-value=15  Score=32.98  Aligned_cols=141  Identities=9%  Similarity=-0.091  Sum_probs=71.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845           52 WAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE  131 (476)
Q Consensus        52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  131 (476)
                      +.....+..+..+-++....+++++|+...++..++.-.  .--..+|.++++++++...    ..+.........|...
T Consensus       190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~  263 (556)
T KOG3807|consen  190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQH  263 (556)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccch
Confidence            344445556666667777777888887777777666532  2345667777777765421    1111111111122111


Q ss_pred             HHHHHHHHHHhcCCCchh--HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHH
Q 011845          132 QARNLFRQATKCNPKSCA--SWIAWSQMEMQQENNLAARQLFERAVQASPKN--RFAWHVWGIFEANMGFIDKGKKLL  205 (476)
Q Consensus       132 ~A~~~~~~~~~~~p~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~  205 (476)
                      +|      ..+.+ .+..  +-..++.+..++|+..+|++.++...+..|-.  ..+.-++...+....-|.....++
T Consensus       264 da------~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL  334 (556)
T KOG3807|consen  264 EA------QLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL  334 (556)
T ss_pred             hh------hhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11      11111 1222  23456667777777777777777766655522  123334444444444444433333

>PF12854 PPR_1: PPR repeat

Probab=89.72  E-value=0.92  Score=25.23  Aligned_cols=25  Identities=12%  Similarity=0.060  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          183 FAWHVWGIFEANMGFIDKGKKLLKI  207 (476)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~A~~~~~~  207 (476)
                      ..|..+...+.+.|+.++|.+++++
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            3444455555555555555554443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.65  E-value=2.1  Score=37.35  Aligned_cols=61  Identities=15%  Similarity=0.069  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      ++...+..|...|.+.+|+++.++++.++|-+...+..+-.++...|+--.+...|+++..
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            3445578889999999999999999999999999999999999999998888888877654

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=89.56  E-value=0.93  Score=24.47  Aligned_cols=22  Identities=36%  Similarity=0.714  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHhcCCCchhHHH
Q 011845          131 EQARNLFRQATKCNPKSCASWI  152 (476)
Q Consensus       131 ~~A~~~~~~~~~~~p~~~~~~~  152 (476)
                      +.|..+|++++...|.++..|.
T Consensus         4 ~~~r~i~e~~l~~~~~~~~~W~   25 (33)
T smart00386        4 ERARKIYERALEKFPKSVELWL   25 (33)
T ss_pred             HHHHHHHHHHHHHCCCChHHHH
Confidence            3333344444443333333333

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.48  E-value=0.7  Score=26.50  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=17.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQ   39 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~   39 (476)
                      +++..+|.+-...++|++|+.-|+++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3455666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.47  E-value=0.99  Score=25.88  Aligned_cols=28  Identities=18%  Similarity=0.243  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                      ++..+|.+-...++|++|+.-|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4556677777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=89.16  E-value=15  Score=32.36  Aligned_cols=27  Identities=7%  Similarity=-0.097  Sum_probs=16.7

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          180 KNRFAWHVWGIFEANMGFIDKGKKLLK  206 (476)
Q Consensus       180 ~~~~~~~~l~~~~~~~~~~~~A~~~~~  206 (476)
                      .++..+..+|..+.+.|++.+|...|-
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            356777777777777777776666553

; PDB: 3LKU_E 2WPV_G.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=88.60  E-value=12  Score=30.44  Aligned_cols=184  Identities=12%  Similarity=0.042  Sum_probs=118.6

Q ss_pred             CCCchhHHHHHHHHH-hcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHH-----HcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            8 PEDGRPYVALGKVLS-KQSKVAEARAIYAKGSQATQGENPYIWQCWAVLEN-----KLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         8 p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      ...|+....||..+. -+.+|++|..+|..-...+  ..+..-+.+|..++     ..++...|++.+..+-.  .+.+.
T Consensus        31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~  106 (248)
T KOG4014|consen   31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQ  106 (248)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHH
Confidence            346777888887764 3678999999998876543  44556666665544     34578899999998866  45677


Q ss_pred             HHHHHHHHHHHh-----C--CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--CchhHHH
Q 011845           82 AWHGWAVLELRQ-----G--NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNP--KSCASWI  152 (476)
Q Consensus        82 ~~~~la~~~~~~-----~--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~  152 (476)
                      +...+|.++..-     +  +..+|++++.++....  +..+.+.|...|..-.  ++       +....|  ..+.   
T Consensus       107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~---  172 (248)
T KOG4014|consen  107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPL---  172 (248)
T ss_pred             HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCCc---
Confidence            888888777632     2  3778999999997764  5666777777665332  22       222233  1121   


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhc
Q 011845          153 AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM----GFIDKGKKLLKIGHAV  211 (476)
Q Consensus       153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~  211 (476)
                      ..+..+.-..+.+.|.+.-.++.++.  ++.+-.++.+.|..-    .+.++|..+-.++.++
T Consensus       173 ~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  173 DRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             chhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            12344455677888888888887764  344555566655432    3566777776666654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.59  E-value=2.3  Score=37.14  Aligned_cols=61  Identities=18%  Similarity=0.014  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATK  142 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  142 (476)
                      .+...+..|...|.+.+|+.+.++++..+|-+...+..+..++...|+--.+.+.|++.-+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            3445677778888888888888888888888888888888888888887777777776543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=88.19  E-value=17  Score=31.77  Aligned_cols=59  Identities=17%  Similarity=0.048  Sum_probs=28.7

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHccCC---CChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011845          254 IAWGWMEWKEGNLDTARELYERALSIDS---TTESAARCLQAWGVLEQRVGNLSAARRLFRS  312 (476)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  312 (476)
                      ..+|..|+..|++++|+.+|+.+.....   -......++..+..|+...|+.+..+.+.-+
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3455555555555555555555533211   1122233445555666666665555554433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=88.13  E-value=16  Score=31.55  Aligned_cols=60  Identities=7%  Similarity=0.036  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHh
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLEN-KLGNIGKARELFDAST   73 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~   73 (476)
                      +..+|.+..+.|+|++.+.++++++...+.-+.+-...+..+|- ..|....+...+....
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e   64 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE   64 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence            56678888888888888888888887765555555555665552 2344445555555444

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=88.05  E-value=22  Score=32.92  Aligned_cols=126  Identities=14%  Similarity=0.129  Sum_probs=80.9

Q ss_pred             HHHcCCHHHHHHHHHHHhhc----CcC-----cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC-----C-CcHHHHHHH
Q 011845           56 ENKLGNIGKARELFDASTVA----DKG-----HIAAWHGWAVLELRQGNIKKARQLLAKGLKFC-----G-GNEYIYQTL  120 (476)
Q Consensus        56 ~~~~g~~~~A~~~~~~~~~~----~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p-~~~~~~~~l  120 (476)
                      +....++.+|..+-+..+..    +..     ....|+.+..++...|+...-...+...+...     . ........+
T Consensus       136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L  215 (493)
T KOG2581|consen  136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL  215 (493)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence            34567888888877766532    111     13567777777888888776666665554431     1 112344556


Q ss_pred             HHHHHHhccHHHHHHHHHHHHhcC--CC--chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845          121 ALLEAKANRYEQARNLFRQATKCN--PK--SCASWIAWSQMEMQQENNLAARQLFERAVQASPKN  181 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~~~~~~--p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  181 (476)
                      -..|...+.++.|.....+..--.  .+  .....+.+|.+..-+++|..|.+++-+++...|.+
T Consensus       216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            677777888888887776654111  11  13345677888888888888888888888888864

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.88  E-value=6  Score=33.14  Aligned_cols=58  Identities=19%  Similarity=0.134  Sum_probs=33.3

Q ss_pred             HHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845          124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN  181 (476)
Q Consensus       124 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  181 (476)
                      +.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-+..|++
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            3444555556665555555556555555555555555666666665555555555544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.20  E-value=2  Score=25.60  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=12.3

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHH
Q 011845          255 AWGWMEWKEGNLDTARELYERAL  277 (476)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~a~  277 (476)
                      .++..|..+|+.+.|...++..+
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHH
Confidence            44555555555555555555555

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.85  E-value=15  Score=35.88  Aligned_cols=100  Identities=19%  Similarity=0.134  Sum_probs=62.6

Q ss_pred             HHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHH
Q 011845           20 VLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKA   99 (476)
Q Consensus        20 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A   99 (476)
                      .....|+++.|...+..+     |  .+.....+..+..+|-.++|+++       .+ +++-.+   .+..+.|+++.|
T Consensus       595 t~vmrrd~~~a~~vLp~I-----~--k~~rt~va~Fle~~g~~e~AL~~-------s~-D~d~rF---elal~lgrl~iA  656 (794)
T KOG0276|consen  595 TLVLRRDLEVADGVLPTI-----P--KEIRTKVAHFLESQGMKEQALEL-------ST-DPDQRF---ELALKLGRLDIA  656 (794)
T ss_pred             HHhhhccccccccccccC-----c--hhhhhhHHhHhhhccchHhhhhc-------CC-Chhhhh---hhhhhcCcHHHH
Confidence            344467777776655443     2  33445566667777776666543       22 222222   233567788888


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845          100 RQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATK  142 (476)
Q Consensus       100 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  142 (476)
                      .++..++     ++..-|..||.+....|++..|.+++.++..
T Consensus       657 ~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  657 FDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             HHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence            7766554     4566788888888888888888888877643

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=86.52  E-value=24  Score=31.82  Aligned_cols=57  Identities=11%  Similarity=0.052  Sum_probs=36.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhc--CcCc--------HHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 011845           50 QCWAVLENKLGNIGKARELFDASTVA--DKGH--------IAAWHGWAVLELRQGNIKKARQLLAKG  106 (476)
Q Consensus        50 ~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~  106 (476)
                      ...+.......+.++++..|.+++..  .|.+        ......++..+.+.|+..+-.......
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~   74 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSL   74 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            34455556667778888888888763  1111        245567788888888877666655544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.45  E-value=1.7  Score=25.91  Aligned_cols=25  Identities=24%  Similarity=0.239  Sum_probs=16.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhh
Q 011845           50 QCWAVLENKLGNIGKARELFDASTV   74 (476)
Q Consensus        50 ~~la~~~~~~g~~~~A~~~~~~~~~   74 (476)
                      +.+|..|..+|+.+.|..+++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3466667777777777777776664

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=86.28  E-value=25  Score=31.71  Aligned_cols=185  Identities=12%  Similarity=-0.013  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845           62 IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT  141 (476)
Q Consensus        62 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  141 (476)
                      -++|+.+-.-+..+-|..++++-.++.+.+...+...=...=-..+-+...+...        ...+-.+++...+.+++
T Consensus       212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~l--------W~r~lI~eg~all~rA~  283 (415)
T COG4941         212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSL--------WDRALIDEGLALLDRAL  283 (415)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhh--------hhHHHHHHHHHHHHHHH
Confidence            4577777777777888888887777766654332211000000000011112222        22334556666666666


Q ss_pred             hcCC-CchhHHHHHHHHHHH-----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Q 011845          142 KCNP-KSCASWIAWSQMEMQ-----QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV--NP  213 (476)
Q Consensus       142 ~~~p-~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~  213 (476)
                      .... .-....-.++.++..     .-+|..-..+|.-.....|+. .+-.+.+.......-.+.++...+.....  -.
T Consensus       284 ~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~  362 (415)
T COG4941         284 ASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAVALAMREGPAAGLAMVEALLARPRLD  362 (415)
T ss_pred             HcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHHHHHHhhhHHhHHHHHHHhhcccccc
Confidence            5542 222222222333222     235555556666655555543 33344445555555556666666555443  12


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 011845          214 RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIA  255 (476)
Q Consensus       214 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  255 (476)
                      .....+...|.++.+.|+.++|...|++++.+.++..+..+.
T Consensus       363 gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l  404 (415)
T COG4941         363 GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL  404 (415)
T ss_pred             cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence            233455566777777777777777777777777666554443

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=85.98  E-value=17  Score=34.06  Aligned_cols=59  Identities=10%  Similarity=-0.113  Sum_probs=33.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChH--HHHHH--HHHHHHcCCHHHHHHHHHHHhh
Q 011845           15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPY--IWQCW--AVLENKLGNIGKARELFDASTV   74 (476)
Q Consensus        15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~~~~   74 (476)
                      ...+..++..++|..|...|..+...- |.+..  .+..+  |..+...-++.+|.+.++..+.
T Consensus       135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl-~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  135 WRRAKELFNRYDYGAAARILEELLRRL-PGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK  197 (379)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            345556666777777777777766542 22222  22222  3333456667777777776654

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=85.86  E-value=3.9  Score=36.45  Aligned_cols=62  Identities=18%  Similarity=0.126  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011845          167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK  228 (476)
Q Consensus       167 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  228 (476)
                      |..+|.+|..+.|.+...++.+|.+....|+.-.|+-.|-+++-.....+.+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555555555555554433334455555544444

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=85.29  E-value=22  Score=33.43  Aligned_cols=58  Identities=17%  Similarity=0.023  Sum_probs=31.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCcCcHH--HHHHH--HHHHHHhCCHHHHHHHHHHhhcc
Q 011845           52 WAVLENKLGNIGKARELFDASTVADKGHIA--AWHGW--AVLELRQGNIKKARQLLAKGLKF  109 (476)
Q Consensus        52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l--a~~~~~~~~~~~A~~~~~~~~~~  109 (476)
                      .+..++..++|..|.+++..+...-|....  .+..+  |..+...-++.+|.+.++..+..
T Consensus       137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  137 RAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            345556677777777777776654222222  23333  33334556666777776665543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.17  E-value=48  Score=33.98  Aligned_cols=55  Identities=11%  Similarity=0.061  Sum_probs=35.0

Q ss_pred             HHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011845           19 KVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTV   74 (476)
Q Consensus        19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~   74 (476)
                      .++.+..-|+-|+.+.+.- ..++..-..++..+|..++..|++++|...|-+.+.
T Consensus       342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~  396 (933)
T KOG2114|consen  342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG  396 (933)
T ss_pred             HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence            4555666777777766654 222122345666777777778888888877777764

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=84.50  E-value=12  Score=34.98  Aligned_cols=59  Identities=14%  Similarity=0.047  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh--------hcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 011845           49 WQCWAVLENKLGNIGKARELFDAST--------VADKGHIAAWHGWAVLELRQGNIKKARQLLAKGL  107 (476)
Q Consensus        49 ~~~la~~~~~~g~~~~A~~~~~~~~--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  107 (476)
                      ...+.++++-+|||..|++.++.+-        ...+-+...++..|-+|+..++|.+|++.|...+
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678888999999999987642        1112334567788888888888888888887765

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=84.43  E-value=5.2  Score=35.61  Aligned_cols=62  Identities=18%  Similarity=0.048  Sum_probs=32.7

Q ss_pred             HHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           65 ARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        65 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      |+.+|.+|....|.+...+..+|.++...|+.-.|+-.|-+++-.....+.+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            44556666666666666666666666666666666655555554433334455555555444

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=83.94  E-value=1.9  Score=22.86  Aligned_cols=25  Identities=20%  Similarity=0.222  Sum_probs=14.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhh
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGS   38 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~   38 (476)
                      |..+-..|.+.|++++|.++|+++.
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHh
Confidence            4445556666666666666666554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.93  E-value=60  Score=34.03  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845          217 VLLQSLALLEYKYSTANLARKLFRRAS  243 (476)
Q Consensus       217 ~~~~~la~~~~~~~~~~~A~~~~~~~~  243 (476)
                      ..|...+.++.+.|+.++|+..|-..+
T Consensus       685 ~l~ee~aill~rl~khe~aL~Iyv~~L  711 (877)
T KOG2063|consen  685 ELYEERAILLGRLGKHEEALHIYVHEL  711 (877)
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            345555666666666666666655444

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=82.94  E-value=3.3  Score=22.50  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=16.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQA   40 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~~   40 (476)
                      |..+...|.+.|++++|.++|.++.+.
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~~   29 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLER   29 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            445555666666666666666665543

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.61  E-value=3.3  Score=38.69  Aligned_cols=61  Identities=10%  Similarity=-0.027  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhc-------cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQ-------ATQGENPYIWQCWAVLENKLGNIGKARELFDASTV   74 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~   74 (476)
                      ...+.+++.-.|+|..|++.++.+--       ..++....+++.+|-+|+.+++|.+|++.|..++.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566778889999999999887621       11344567889999999999999999999998863

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=82.31  E-value=2.5  Score=22.39  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011845           49 WQCWAVLENKLGNIGKARELFDASTV   74 (476)
Q Consensus        49 ~~~la~~~~~~g~~~~A~~~~~~~~~   74 (476)
                      |..+...+.+.|++++|.++|++..+
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhH
Confidence            44455556666666666666665543

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=82.23  E-value=20  Score=27.45  Aligned_cols=56  Identities=16%  Similarity=0.116  Sum_probs=32.1

Q ss_pred             HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 011845           89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN  144 (476)
Q Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  144 (476)
                      +...+|+-++-.+++....+....++..+..+|..|.+.|+..++-+++.++.+..
T Consensus        95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            34456666666666666665445566777777777777777777777777776543

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.85  E-value=78  Score=33.23  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845          117 YQTLALLEAKANRYEQARNLFRQATK  142 (476)
Q Consensus       117 ~~~la~~~~~~g~~~~A~~~~~~~~~  142 (476)
                      +..|+.+|...|+.++|++++.+...
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d  532 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVD  532 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhc
Confidence            45667777777777777777777665

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=80.82  E-value=9.4  Score=38.16  Aligned_cols=116  Identities=14%  Similarity=0.068  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHH---HcCCHHHHHHHHHHHhccC-CCCHH
Q 011845          182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPV------LLQSLALLEY---KYSTANLARKLFRRASEID-PRHQP  251 (476)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~---~~~~~~~A~~~~~~~~~~~-~~~~~  251 (476)
                      +++..++...|....+|+..+++.+..-.+ |+.-.      +.+.++-++.   +-|+-++|+...-.+++.. |-.++
T Consensus       201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD  279 (1226)
T KOG4279|consen  201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD  279 (1226)
T ss_pred             HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence            556666777777777888777766654433 32211      1122222222   3466677777777666653 34455


Q ss_pred             HHHHHHHHHHH---------cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCC
Q 011845          252 VWIAWGWMEWK---------EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGN  302 (476)
Q Consensus       252 ~~~~l~~~~~~---------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~  302 (476)
                      .+...|.+|..         .+..+.|+++|+++++..|.....    .+++.++...|+
T Consensus       280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG----IN~atLL~aaG~  335 (1226)
T KOG4279|consen  280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG----INLATLLRAAGE  335 (1226)
T ss_pred             eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc----ccHHHHHHHhhh
Confidence            66666666543         344567788888888887765332    344555555553

>PRK12798 chemotaxis protein; Reviewed

Probab=80.79  E-value=50  Score=30.98  Aligned_cols=216  Identities=10%  Similarity=-0.016  Sum_probs=141.0

Q ss_pred             HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CcCcHHHHHHHHH-HHHHhCCHHHH
Q 011845           22 SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVA-DKGHIAAWHGWAV-LELRQGNIKKA   99 (476)
Q Consensus        22 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~la~-~~~~~~~~~~A   99 (476)
                      +.-|+..--..++    ..+...+.+.-..-|...+-.|+-.+|.+.+..+-.. .|.....+..|.. ..+...+..+|
T Consensus        92 lSGGnP~vlr~L~----~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~A  167 (421)
T PRK12798         92 LSGGNPATLRKLL----ARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATA  167 (421)
T ss_pred             hcCCCHHHHHHHH----HcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHH
Confidence            3455654433333    3333345555556677777889999999998876422 2333444554444 34566789999


Q ss_pred             HHHHHHhhccCCCcH---HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHhccHHHHHHHHHH
Q 011845          100 RQLLAKGLKFCGGNE---YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA---SWIAWSQMEMQQENNLAARQLFER  173 (476)
Q Consensus       100 ~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~  173 (476)
                      ++.|+.+--..|...   .++..-..+....|+.+++..+-.+.+....+++.   .+...+......++-..- ..+..
T Consensus       168 l~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~  246 (421)
T PRK12798        168 LKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVE  246 (421)
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHH
Confidence            999999988888763   35555566678899999999888888887766654   334444444444432222 33555


Q ss_pred             HHHc-CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845          174 AVQA-SPK-NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR----DPVLLQSLALLEYKYSTANLARKLFRRA  242 (476)
Q Consensus       174 a~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~  242 (476)
                      .+.. +|. ...+|..++..-...|+.+-|.-.-++++.+...    ...+....+....-..+++++...+...
T Consensus       247 ~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I  321 (421)
T PRK12798        247 ILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI  321 (421)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence            5544 443 3578888999999999999999999999887533    2334444555555666788887777654

>PRK09687 putative lyase; Provisional

Probab=80.26  E-value=43  Score=29.91  Aligned_cols=217  Identities=8%  Similarity=-0.100  Sum_probs=87.9

Q ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH----HHHHHHHHHHHHcCCCcHHHHHHH
Q 011845          113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN----LAARQLFERAVQASPKNRFAWHVW  188 (476)
Q Consensus       113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----~~A~~~~~~a~~~~~~~~~~~~~l  188 (476)
                      +..+....+..+...|. +++...+.+++.  ..++......+.++.+.|..    .++...+...+..+|+ +.+....
T Consensus        36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d-~~VR~~A  111 (280)
T PRK09687         36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS-ACVRASA  111 (280)
T ss_pred             CHHHHHHHHHHHHhcCc-chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC-HHHHHHH
Confidence            44445555555555553 233333333322  22445555555555555542    3455555554444443 2233222


Q ss_pred             HHHHHHcCC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 011845          189 GIFEANMGF-----IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKE  263 (476)
Q Consensus       189 ~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  263 (476)
                      +..+...+.     ...+...+..++.  ..++.+....+..+...++ .+++..+-.+++. + ++.+....+..+-..
T Consensus       112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~--D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-~-~~~VR~~A~~aLg~~  186 (280)
T PRK09687        112 INATGHRCKKNPLYSPKIVEQSQITAF--DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD-P-NGDVRNWAAFALNSN  186 (280)
T ss_pred             HHHHhcccccccccchHHHHHHHHHhh--CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-C-CHHHHHHHHHHHhcC
Confidence            222222221     1122232222221  1144555555555545444 4555555555542 1 223333222222222


Q ss_pred             C-ChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 011845          264 G-NLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE  342 (476)
Q Consensus       264 g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  342 (476)
                      + ....+...+..++. +++...    -......+.+.|+ ..|+..+-+.++...    .....+..+...|+. +|..
T Consensus       187 ~~~~~~~~~~L~~~L~-D~~~~V----R~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p  255 (280)
T PRK09687        187 KYDNPDIREAFVAMLQ-DKNEEI----RIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLP  255 (280)
T ss_pred             CCCCHHHHHHHHHHhc-CCChHH----HHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHH
Confidence            1 13355555555552 222211    1111222333344 455555555554311    233444444455543 3444


Q ss_pred             HHHHHHh
Q 011845          343 IRNLYFQ  349 (476)
Q Consensus       343 ~~~~~~~  349 (476)
                      .+..+..
T Consensus       256 ~L~~l~~  262 (280)
T PRK09687        256 VLDTLLY  262 (280)
T ss_pred             HHHHHHh
Confidence            4444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	476
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		5e-07
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		1e-06
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		8e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE 226
           A + +++A++  P++  AW+  G      G  D+  +  +    ++PR      +L    
Sbjct: 20  AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79
Query: 227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283
           YK    + A + +++A E+DPR    W   G   +K+G+ D A E Y++AL +D  +
Sbjct: 80  YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 116/295 (39%), Gaps = 6/295 (2%)
Query: 44  ENPYIWQCWAVLEN---KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKAR 100
           +NP + + ++ L N   + G + +A E +  +       I  +   A   +  G+++ A 
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 101 QLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ 160
           Q     L++      +   L  L     R E+A+  + +A +  P    +W     +   
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQ 220
           Q     A   FE+AV   P    A+   G         D+         +++P   V+  
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 221 SLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
           +LA + Y+    +LA   +RRA E+ P     +        ++G++  A + Y  AL + 
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 281 STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQG 335
            T    A  L     +++  GN+  A RL+R +L +  +        A + + QG
Sbjct: 302 PTH---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
           AW+  G      G  D+  +  +    ++P +     +L    YK    + A + +++A 
Sbjct: 11  AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           E+DP +   W   G   +K+G+ D A E Y++AL +D     A + L   G  +Q+ G
Sbjct: 71  ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL---GNAKQKQG 125

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286
           YK    + A + +++A E+DP +   W   G   +K+G+ D A E Y++AL +D     A
Sbjct: 20  YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 287 ARCLQAWGVLEQRVG 301
            + L   G  +Q+ G
Sbjct: 80  KQNL---GNAKQKQG 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	476
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	9e-31
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-25
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-18
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-17
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	8e-29
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-20
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-19
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	5e-15
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-20
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-10
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	3e-19
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	2e-18
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	2e-16
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	3e-16
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	2e-14
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	8e-14
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	8e-11
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	6e-10
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	5e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-13
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-08
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	5e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score =  120 bits (301), Expect = 9e-31
 Identities = 42/246 (17%), Positives = 84/246 (34%), Gaps = 7/246 (2%)

Query: 4   IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIG 63
             Y  +  +     G + + +    EA  IY +       +N  ++  +A  E       
Sbjct: 57  AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 116

Query: 64  KARELFD-ASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL 122
           K   +++    + D      +  +     R   IK  R +  K  +      ++Y T AL
Sbjct: 117 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176

Query: 123 LEAKANR-YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP-- 179
           +E   ++    A  +F    K         +A+         +   R LFER + +    
Sbjct: 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236

Query: 180 --KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE-YKYSTANLAR 236
             K+   W  +  FE+N+G +    K+ K        +    ++  L++ YK+       
Sbjct: 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCS 296

Query: 237 KLFRRA 242
               +A
Sbjct: 297 ASELKA 302

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score =  105 bits (262), Expect = 2e-25
 Identities = 37/286 (12%), Positives = 90/286 (31%), Gaps = 27/286 (9%)

Query: 73  TVADKGHIAAWHGWAVLELRQGNIKKARQLLAKG----------------------LKFC 110
           T  +   +  W  +   E       + + L+ K                        ++ 
Sbjct: 1   TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYL 60

Query: 111 GGNEYIYQTLALLEAKANRYEQARNLFRQATK-CNPKSCASWIAWSQMEMQQENNLAARQ 169
             +  +      +       ++A N++ +A      K+   + A++  E  +        
Sbjct: 61  EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 120

Query: 170 LFERAVQASPKNR-FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK 228
           ++ R +     +    +  +  F      I  G+ + K           +  + AL+EY 
Sbjct: 121 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180

Query: 229 YS-TANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA 287
            S   ++A K+F    +         +A+          +  R L+ER L+  S     +
Sbjct: 181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240

Query: 288 RCL-QAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEE 332
             +   +   E  +G+L++  ++ +       + Y      A L +
Sbjct: 241 GEIWARFLAFESNIGDLASILKVEKRRFTAFREEY-EGKETALLVD 285

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 84.3 bits (208), Expect = 3e-18
 Identities = 23/196 (11%), Positives = 54/196 (27%), Gaps = 6/196 (3%)

Query: 3   CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNI 62
                 ++   Y A       + K  +  +IY +       +   ++  +     +   I
Sbjct: 91  ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 150

Query: 63  GKARELFDASTVADKGHIAAWHGWAVLELR-QGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
              R +F  +    +     +   A++E     +   A ++   GLK  G          
Sbjct: 151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI 210

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCAS----WIAWSQMEMQQENNLAARQLFERAVQA 177
              +  N     R LF +               W  +   E    +  +  ++ +R   A
Sbjct: 211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270

Query: 178 SPKNRFAWHVWGIFEA 193
             +  +      +   
Sbjct: 271 FRE-EYEGKETALLVD 285

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 82.8 bits (204), Expect = 1e-17
 Identities = 23/216 (10%), Positives = 60/216 (27%), Gaps = 33/216 (15%)

Query: 141 TKCNPKSCASWIAWSQMEMQQENNLA--------ARQLFERAVQASPKNRFAWHVWGIFE 192
           T    +    W  + Q E                    +E+ +     +   W+    + 
Sbjct: 1   TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYL 60

Query: 193 ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEI-DPRHQP 251
                                +   LL     +      ++ A  ++ RA      ++  
Sbjct: 61  --------------------EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 100

Query: 252 VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFR 311
           ++ A+   E      +    +Y R L+I+    +       +    +R   + + R +F+
Sbjct: 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYI--QYMKFARRAEGIKSGRMIFK 158

Query: 312 SSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347
            +       +  ++T A +E              ++
Sbjct: 159 KAREDARTRHHVYVTAALMEYYCSKDK--SVAFKIF 192

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score =  118 bits (295), Expect = 8e-29
 Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 7/236 (2%)

Query: 1   MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG 60
            +   Y  +  +     G + + +    EA  IY +       +N  ++  +A  E    
Sbjct: 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335

Query: 61  NIGKARELFD-ASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQT 119
              K   +++    + D      +  +     R   IK  R +  K  +      ++Y T
Sbjct: 336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395

Query: 120 LALLEAKANR-YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQAS 178
            AL+E   ++    A  +F    K         +A+         +   R LFER + + 
Sbjct: 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455

Query: 179 P----KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE-YKY 229
                K+   W  +  FE+N+G +    K+ K        +    ++  L++ YK+
Sbjct: 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKF 511

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 92.2 bits (228), Expect = 3e-20
 Identities = 32/268 (11%), Positives = 86/268 (32%), Gaps = 16/268 (5%)

Query: 48  IWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGL 107
           +W+ +   E       + + L     +               E     +     +  +  
Sbjct: 232 MWKKYIQWEKSNPLRTEDQTLITKRVMF------------AYEQCLLVLGHHPDIWYEAA 279

Query: 108 KFCGGNEYIYQTLALLEAKANRYEQARNLFRQATK-CNPKSCASWIAWSQMEMQQENNLA 166
           ++   +  +      +       ++A N++ +A      K+   + A++  E  +     
Sbjct: 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339

Query: 167 ARQLFERAVQASPKN-RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALL 225
              ++ R +     +    +  +  F      I  G+ + K           +  + AL+
Sbjct: 340 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399

Query: 226 EYK-YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE 284
           EY      ++A K+F    +         +A+          +  R L+ER L+  S   
Sbjct: 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459

Query: 285 SAARCL-QAWGVLEQRVGNLSAARRLFR 311
             +  +   +   E  +G+L++  ++ +
Sbjct: 460 EKSGEIWARFLAFESNIGDLASILKVEK 487

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 88.8 bits (219), Expect = 4e-19
 Identities = 50/347 (14%), Positives = 109/347 (31%), Gaps = 29/347 (8%)

Query: 23  KQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA 82
           +  ++   R +Y +G          +W+ +   E  +      + + D S         A
Sbjct: 142 ENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVA 201

Query: 83  WHGWAVLELRQGNIK-----------KARQLLAKGLKFCGGNEYIYQTLALLEAKAN-RY 130
                V++    N             +   +  K +++   N    +   L+  +    Y
Sbjct: 202 KEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261

Query: 131 EQARNLFR-------QATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
           EQ   +         +A +   +S         M   +  +  A  ++ERA+    K   
Sbjct: 262 EQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321

Query: 184 AWHV-WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQ-SLALLEYKYSTANLARKLFRR 241
             +  +  +E +    +K   +     A+   DP L+         +       R +F++
Sbjct: 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381

Query: 242 ASEIDPRHQPVWIAWGWMEWK-EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV 300
           A E       V++    ME+    +   A +++E  L            + A+      +
Sbjct: 382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY---VLAYIDYLSHL 438

Query: 301 GNLSAARRLFRSSLNINS----QSYITWMTWAQLEEDQGNSVRAEEI 343
              +  R LF   L   S    +S   W  +   E + G+     ++
Sbjct: 439 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 485

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 76.4 bits (187), Expect = 5e-15
 Identities = 51/342 (14%), Positives = 104/342 (30%), Gaps = 48/342 (14%)

Query: 44  ENPYIWQCWAVL--ENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQ 101
           ENPY    W++L  E +   I KAR+ ++            W  +   E++  N  K  +
Sbjct: 8   ENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEK 67

Query: 102 LLAKGLKFCGGNE-------YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAW 154
           L  + L      +       Y+ +T   L +   +  QA +           S   W+ +
Sbjct: 68  LFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY 127

Query: 155 SQMEMQ---------QENNLAARQLFERAVQASPKN-RFAWHVWGIFEANMGFIDKGKKL 204
                           +   A R++++R       N    W  +  +E  +      K +
Sbjct: 128 INFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMI 187

Query: 205 LKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAW-GWMEWKE 263
                       V        EY+     L R       +  P+       W  +++W++
Sbjct: 188 EDRSRDYMNARRV------AKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241

Query: 264 GNLDTA----------RELYERALSIDSTT-----------ESAARCLQAWGVLEQRVGN 302
            N                 YE+ L +               E +++ L   G +      
Sbjct: 242 SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301

Query: 303 LSAARRLFRSSLNINSQSYIT-WMTWAQLEEDQGNSVRAEEI 343
              A  ++  +++   +  +  +  +A  EE +    +   I
Sbjct: 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 60.6 bits (146), Expect = 4e-10
 Identities = 29/235 (12%), Positives = 75/235 (31%), Gaps = 19/235 (8%)

Query: 136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM 195
           +  +  + NP    +W    + E Q +    AR+ +ER V   P +   W ++   E   
Sbjct: 1   MAEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA 59

Query: 196 GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASE-------IDPR 248
              DK +KL +          +    L+ +          ++   +A +       ++  
Sbjct: 60  KNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 119

Query: 249 HQPVWIAW--------GWMEWKE-GNLDTARELYERALSIDSTTESAARCLQAWGVLEQR 299
              +W+ +            + E   +   R +Y+R         +  +  + +   E+ 
Sbjct: 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP--MINIEQLWRDYNKYEEG 177

Query: 300 VGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV 354
           +    A + +   S +  +   +       ++    N+            Q+ ++
Sbjct: 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 92.7 bits (230), Expect = 2e-20
 Identities = 52/366 (14%), Positives = 103/366 (28%), Gaps = 45/366 (12%)

Query: 12  RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENP--------YIWQCWAVLENKLGNIG 63
                L  +   + +   A     K  +  Q E+           W  +A +   +G + 
Sbjct: 52  TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLS 111

Query: 64  KARELFDASTVADKGHIAAWH----------GWAVLELRQGNIKKARQLLAKGLKFCGGN 113
             +   D      +   + +           GW  L+      ++A+    K L+    N
Sbjct: 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171

Query: 114 EYIYQTLALLEA---KANRYEQARNLFRQATKCNPKSCASW----IAWSQMEMQQENNLA 166
                 LA+           + A +  RQA + NP +        +   +M  + E    
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231

Query: 167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALL- 225
             +L E A++ +P           F       DK  +LLK      P +  L   +    
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291

Query: 226 ------------------EYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLD 267
                                      A    ++A E +     V      +       +
Sbjct: 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351

Query: 268 TARELYERALSIDSTTESAARCLQAWG-VLEQRVGNLSAARRLFRSSLNINSQSYITWMT 326
            A   +++  S + T  +       +G     ++     A   F   + IN +S      
Sbjct: 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411

Query: 327 WAQLEE 332
             +L++
Sbjct: 412 KDKLQK 417

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 49/317 (15%), Positives = 86/317 (27%), Gaps = 46/317 (14%)

Query: 76  DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE---------YIYQTLALLEAK 126
            +      +  A L+  +G  + A + L K  +                 +   A +   
Sbjct: 47  REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH 106

Query: 127 ANRYEQARNLFRQATKCNPKSCASW----------IAWSQMEMQQENNLAARQLFERAVQ 176
             R    +    +      K  + +            W++++     N  A+  FE+A++
Sbjct: 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166

Query: 177 ASPKNRFAWHVWGI---FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLAL-LEYKYSTA 232
             PKN        I      N          L+    +NP +  L   LAL L       
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG 226

Query: 233 NL---ARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARC 289
                  KL   A E  P    V  +      ++   D A EL ++AL            
Sbjct: 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286

Query: 290 L----------------QAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED 333
           +                       + +  +  A    + +   N   +      A L   
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346

Query: 334 QGNSVRAEEIRNLYFQQ 350
                 AE     YFQ+
Sbjct: 347 ADQYEEAEY----YFQK 359

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 37/294 (12%), Positives = 87/294 (29%), Gaps = 32/294 (10%)

Query: 86  WAVLELRQGNIKKARQLLAKGLKFCGGNEY--IYQTLALLEAKANRYEQARNLFRQATK- 142
           W ++E  + ++      +    +F        +   LA L+    + E A    R+A + 
Sbjct: 22  WNLME-GENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEEL 80

Query: 143 --------CNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHV------- 187
                      +S  +W  ++ +          +   ++      K    + +       
Sbjct: 81  IQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140

Query: 188 ---WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY---KYSTANLARKLFRR 241
              W   +      ++ K   +      P++P     LA+  Y    +  +  A    R+
Sbjct: 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200

Query: 242 ASEIDPRHQPVWIAWGW----MEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLE 297
           A  ++P +Q + +        M  +        +L E AL            L++     
Sbjct: 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV---LRSAAKFY 257

Query: 298 QRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQR 351
           +R      A  L + +L     +             +   V       +Y +++
Sbjct: 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 32/294 (10%), Positives = 68/294 (23%), Gaps = 34/294 (11%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSK----VAEARAIYAKGSQATQGENPYIWQCWAVLEN 57
           + I   P++    V L   L K  +      E   +  + +         + +  A    
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE-ALEKAPGVTDVLRSAAKFYR 258

Query: 58  KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
           +     KA EL   +      +             +       +                
Sbjct: 259 RKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG------------- 305

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA 177
             +            A    ++A + N          + +    +    A   F++    
Sbjct: 306 --MYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

Query: 178 SPKNRFAWHVW----GIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN 233
                    +           M   DK       G  +N +     +    L+       
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ------- 416

Query: 234 LARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA 287
              K+ +     +           +++     +  A E  ER L   S   SA+
Sbjct: 417 ---KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 89.2 bits (220), Expect = 3e-19
 Identities = 35/292 (11%), Positives = 88/292 (30%), Gaps = 20/292 (6%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           K  + +  +         V         +   Y +     +G +         LE + G 
Sbjct: 128 KDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187

Query: 62  -------IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE 114
                    +   + +    +       +  ++   +  G  +KA++++ +G++      
Sbjct: 188 KLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSD-GM 246

Query: 115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS------WIAWSQMEMQQENNLAAR 168
           ++     L+  +   Y   +  +      + +   S       I      +++      R
Sbjct: 247 FLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306

Query: 169 QLFERAVQASPKNRFAWHVWGIFEAN-MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY 227
           +LF             +      E    G       +   G   +P   +L +   L   
Sbjct: 307 KLFIELGNEGVGPHV-FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365

Query: 228 KYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI 279
           +      AR LF+R      +   +W +    E+  G+++  REL ++ +  
Sbjct: 366 RIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 86.8 bits (214), Expect = 2e-18
 Identities = 50/415 (12%), Positives = 124/415 (29%), Gaps = 36/415 (8%)

Query: 17  LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVAD 76
            GK+  +Q+++ + R  Y +  Q   G    +W+ +   E +L  I   + + D   +  
Sbjct: 95  EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQ 154

Query: 77  KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNL 136
                      ++             L                  +         +   +
Sbjct: 155 SSFQRYQQIQPLIRGWSVKNAARLIDLEMENG-------------MKLGGRPHESRMHFI 201

Query: 137 FRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG 196
                     +   +  +S+  +       A+++ ER ++ S     + +   + +    
Sbjct: 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAV 261

Query: 197 F-----IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP 251
           +          +        +    +L  +      K     L RKLF            
Sbjct: 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHV 321

Query: 252 VWIAWGWMEWK-EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLF 310
            +I   ++E+   G+  T   ++   L     +       + + +   R+G+   AR LF
Sbjct: 322 -FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK---EEFFLFLLRIGDEENARALF 377

Query: 311 RSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMD---- 366
           +       ++   W +  + E   G+    E  R L   Q+ + +   + +         
Sbjct: 378 KRL----EKTSRMWDSMIEYEFMVGS---MELFRELV-DQKMDAIKADAILPPLPPREHN 429

Query: 367 -IIDPALDRIKQLLNLEKSSYKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLES 420
             ++  L R    L+       +    S   +E  ++   +S+ + +     +E 
Sbjct: 430 VQMEGILGRYHCFLDSFNFLDLKIRDNSRLLDEFMENLPKISQQNNVLSNLRVEK 484

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 80.7 bits (198), Expect = 2e-16
 Identities = 30/244 (12%), Positives = 80/244 (32%), Gaps = 15/244 (6%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
             +D +      Y    + L    +  +A+ +  +G + +  +  ++   + ++ ++   
Sbjct: 204 YILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMS--DGMFLSLYYGLVMDEEAV 261

Query: 62  IGKARELFDASTVADKGHIAA------WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEY 115
            G  +  +          + +              L++  ++  R+L  +         +
Sbjct: 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGV-GPH 320

Query: 116 IYQTLALLEAKANR-YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA 174
           ++   A +E  A        N+F      +P S      +    ++  +   AR LF+R 
Sbjct: 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380

Query: 175 VQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANL 234
                K    W     +E  +G ++  ++L+         D + L  L   E+      +
Sbjct: 381 ----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAI-LPPLPPREHNVQMEGI 435

Query: 235 ARKL 238
             + 
Sbjct: 436 LGRY 439

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 80.3 bits (197), Expect = 3e-16
 Identities = 55/479 (11%), Positives = 124/479 (25%), Gaps = 93/479 (19%)

Query: 45  NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA-VLELRQGNIKKARQLL 103
           +P      A       +      LF    +    ++  W  +   +        K  ++ 
Sbjct: 13  SPSAIMEHARRLYMSKDYRSLESLFGRC-LKKSYNLDLWMLYIEYVRKVSQKKFKLYEVY 71

Query: 104 AKGLKFCGG--------NEYIYQTLALLEAKANRYEQARNLFRQATKC------------ 143
              L              EYI +    +E +  R E+ RN + +A +             
Sbjct: 72  EFTLGQFENYWDSYGLYKEYI-EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDF 130

Query: 144 -------------------------------------NPKSCASWIAWSQMEMQQENNLA 166
                                                   S  +      +EM+    L 
Sbjct: 131 ENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLG 190

Query: 167 A-------RQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL 219
                     +    + +       +  +  +   +G  +K KK+++ G  ++    + L
Sbjct: 191 GRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL 250

Query: 220 QSLALLEYKYSTANLARKLFRRASEIDPRHQP------VWIAWGWMEWKEGNLDTARELY 273
               L+  + +     ++ +                  + I       K+  L+  R+L+
Sbjct: 251 Y-YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLF 309

Query: 274 ERALSIDSTTESAARCLQAWGVLEQRV-GNLSAARRLFRSSLNINSQSYITWMTWAQLEE 332
               +                 +E    G+ +    +F S L  +  S +    +     
Sbjct: 310 IELGNEGVGPH----VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365

Query: 333 DQGNSVRAEEIRNLYFQQRTEVVDDASWV-----MGFMDIIDPALDRIKQLL--NLEKSS 385
             G+    E  R L+ +         S +     +G M++    +D+    +  +     
Sbjct: 366 RIGD---EENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPP 422

Query: 386 YKEPSAYSPGDNESTDDEASVSRYSGLYVGNDLESASGFDLDDFIRNKLNLDPDQLDVL 444
                     +         +  ++ L    DL+      L D     L     Q +VL
Sbjct: 423 LPPREHNVQMEGILGRYHCFLDSFNFL----DLKIRDNSRLLDEFMENLPKISQQNNVL 477

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 18/233 (7%), Positives = 58/233 (24%), Gaps = 43/233 (18%)

Query: 137 FRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG 196
             +       S ++ +  ++     ++  +   LF R ++ S  N   W ++        
Sbjct: 3   AEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLY-------- 53

Query: 197 FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASE---IDPRHQPVW 253
                                    +  +           +++               ++
Sbjct: 54  -------------------------IEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88

Query: 254 IAW----GWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRL 309
             +    G +E ++  ++  R  Y RAL       S +   + +   E  +  ++  + +
Sbjct: 89  KEYIEEEGKIEDEQTRIEKIRNGYMRALQTP--MGSLSELWKDFENFELELNKITGKKIV 146

Query: 310 FRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVM 362
             +     S           +      +        +    +       S + 
Sbjct: 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMH 199

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 84.5 bits (209), Expect = 1e-17
 Identities = 38/338 (11%), Positives = 96/338 (28%), Gaps = 53/338 (15%)

Query: 14  YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVL--ENKLGNIGKAREL--- 68
               G+V +  S    A+  Y +   A    +   ++ +  L   + L    +   +   
Sbjct: 203 CYLRGQVYTNLSNFDRAKECYKE---ALM-VDAKCYEAFDQLVSNHLLTADEEWDLVLKL 258

Query: 69  -FDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127
            +   +  D   + + +   + +    +  +  +     +     +  +    A      
Sbjct: 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318

Query: 128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHV 187
           +R+     +  +  + +P +   +        +         +    V   P+    W  
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL- 377

Query: 188 WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP 247
                  +G                    +    +  +         AR+ F ++S +DP
Sbjct: 378 ------AVG--------------------IYYLCVNKIS-------EARRYFSKSSTMDP 404

Query: 248 RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW---GVLEQRVGNLS 304
           +  P WI +      EG  D A   Y  A  +             +   G+   ++GN+ 
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ------GTHLPYLFLGMQHMQLGNIL 458

Query: 305 AARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
            A    +SS  +     +       +  ++ +   A  
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 82.2 bits (203), Expect = 6e-17
 Identities = 41/351 (11%), Positives = 104/351 (29%), Gaps = 14/351 (3%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           + +    +    +  L       +       +    S  ++ +  ++   + +  NK  +
Sbjct: 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH 284

Query: 62  IGKAREL--FDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQT 119
             + R    + +S    +         A     +        +  K L+    N  +Y  
Sbjct: 285 EDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344

Query: 120 LALLEAKANRYEQARNLFRQATKCNPKSCASW----IAWSQMEMQQENNLAARQLFERAV 175
                 ++    +   +       +P+   +W    I +  +    E    AR+ F ++ 
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE----ARRYFSKSS 400

Query: 176 QASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA 235
              P+   AW  +    A  G  D+          +     +    L +   +     LA
Sbjct: 401 TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460

Query: 236 RKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA-RCLQAW- 293
            +  + +  +      +    G + + + ++ TA   ++ AL +   T+S        W 
Sbjct: 461 NEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520

Query: 294 --GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
             G   +++    AA       L +++         A +   +     A  
Sbjct: 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 36/293 (12%), Positives = 82/293 (27%), Gaps = 22/293 (7%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
             I+   +     +     L  +S+  +  AI    ++  +  +PY    + +    L  
Sbjct: 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT---TKILE-IDPYNLDVYPLHLASLHE 351

Query: 62  IGKARELFDASTVA---DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQ 118
            G+  +L+  S             W    +  L    I +AR+  +K           + 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411

Query: 119 TLALLEAKANRYEQARNLFRQATKCNPKSCASW----IAWSQMEMQQENNLAARQLFERA 174
             A   A    ++QA + +  A +    +   +    +   Q+         A +  + +
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILL----ANEYLQSS 467

Query: 175 VQASPKNRFAWHVWGIFEANMGFIDKGKK-------LLKIGHAVNPRDPVLLQSLALLEY 227
                 +    +  G+   N   +            L+K   +          +L     
Sbjct: 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527

Query: 228 KYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
           K    + A     +   +      V  A   +   +     A      +L+I 
Sbjct: 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 35/235 (14%), Positives = 77/235 (32%), Gaps = 20/235 (8%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQ--GENPYIWQCWAVLENKL 59
             +D  PE    ++A+G      +K++EAR  +   S+++    +    W  +A      
Sbjct: 364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF---SKSSTMDPQFGPAWIGFAHSFAIE 420

Query: 60  GNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQT 119
           G   +A   +  +    +G    +    +  ++ GNI  A + L         +  +   
Sbjct: 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE 480

Query: 120 LALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLA-----------AR 168
           L ++    +  + A N F+ A     K+ ++   W+        NL            A 
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT----WANLGHAYRKLKMYDAAI 536

Query: 169 QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA 223
               + +  S  +        +   +          L    A++P + +    L 
Sbjct: 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 41/279 (14%), Positives = 86/279 (30%), Gaps = 30/279 (10%)

Query: 70  DASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR 129
           +A              W    L Q   K A  +  K L   G     +  LA +      
Sbjct: 74  NAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFW-LAQVYCCTGD 132

Query: 130 YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWG 189
           Y +A+ L  +    N                   + A R L    +      + A ++ G
Sbjct: 133 YARAKCLLTKEDLYNR------------------SSACRYLAAFCLVKLYDWQGALNLLG 174

Query: 190 IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH 249
                        KLL     +   +  +      +    S  + A++ ++ A  +D + 
Sbjct: 175 ETNPFRKDEKNANKLLMQDGGIKL-EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

Query: 250 QPVWIAWGWMEWKEGNLDTARELYERALSID--STTESAARCLQAW---GVLEQRVGNLS 304
              + A+  +     +L TA E ++  L ++  + ++  A  L++     + +    +  
Sbjct: 234 ---YEAFDQL--VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288

Query: 305 AARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEI 343
                + SS+N   +S    +  A     +   +    I
Sbjct: 289 RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 46/294 (15%), Positives = 93/294 (31%), Gaps = 11/294 (3%)

Query: 53  AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG 112
           A  E + G+   A          +  +       + +  +   + ++       +K    
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASW----IAWSQMEMQQENNLAAR 168
               Y  L  +  +  + ++A   +R A +  P     +     A       +     A 
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG----AV 121

Query: 169 QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK 228
           Q +  A+Q +P         G     +G +++ K          P   V   +L  +   
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 229 YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAAR 288
                LA   F +A  +DP     +I  G +  +    D A   Y RALS+         
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241

Query: 289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
            L     +    G +  A   +R ++ +       +   A   +++G+   AE+
Sbjct: 242 NL---ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 81.4 bits (202), Expect = 6e-17
 Identities = 48/336 (14%), Positives = 110/336 (32%), Gaps = 18/336 (5%)

Query: 14  YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDAST 73
            + L     +      A     +  +  + +N  +    + +  +   + ++      + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 74  VADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQA 133
             +     A+     +   +G +++A +     L+        Y  LA     A   E A
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 134 RNLFRQATKCNPKSCASW----IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWG 189
              +  A + NP               +   +E    A+  + +A++  P    AW   G
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEE----AKACYLKAIETQPNFAVAWSNLG 176

Query: 190 IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH 249
                 G I       +    ++P       +L  +  +    + A   + RA  + P H
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

Query: 250 QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW---GVLEQRVGNLSAA 306
             V      + +++G +D A + Y RA+ +            A+       +  G+++ A
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEA 290

Query: 307 RRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
              + ++L +      +    A ++ +QGN   A  
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 78.4 bits (194), Expect = 6e-16
 Identities = 51/339 (15%), Positives = 111/339 (32%), Gaps = 12/339 (3%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
             I   P     Y  LG V  ++ ++ EA   Y   +   + +    +   A      G+
Sbjct: 58  LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH-ALRLKPDFIDGYINLAAALVAAGD 116

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           +  A + + ++   +            L    G +++A+    K ++        +  L 
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASW----IAWSQMEMQQENNLAARQLFERAVQA 177
            +         A + F +A   +P    ++        +  +       A   + RA+  
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR----AVAAYLRALSL 232

Query: 178 SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARK 237
           SP +              G ID      +    + P  P    +LA    +  +   A  
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292

Query: 238 LFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLE 297
            +  A  + P H         ++ ++GN++ A  LY +AL +     +A   L     + 
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL---ASVL 349

Query: 298 QRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGN 336
           Q+ G L  A   ++ ++ I+      +       ++  +
Sbjct: 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 50/314 (15%), Positives = 103/314 (32%), Gaps = 21/314 (6%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           + +D   E+    V+L +             +    S   + ++P+   C  V    L  
Sbjct: 13  ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLT---SVVME-KDPFHASCLPVHIGTLVE 68

Query: 62  IGKARELFDASTVA---DKGHIAAWHGWAVLELRQGN-IKKARQLLAKGLKFCGGNEYIY 117
           + KA ELF  S         +  +W       L  G+  + AR+ L+K           +
Sbjct: 69  LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW 128

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA 177
                  A  + ++QA   +  A +         +          N+  A + F +A+  
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188

Query: 178 SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARK 237
           +P++ F  H  G+     G     +K               +          +  ++ RK
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248

Query: 238 L---------FRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA-- 286
           L          R+A  + P++   + A G++    GN + A + +  AL +      +  
Sbjct: 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308

Query: 287 --ARCLQAWGVLEQ 298
               C++ +    +
Sbjct: 309 MLGHCIEMYIGDSE 322

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 43/306 (14%), Positives = 83/306 (27%), Gaps = 13/306 (4%)

Query: 29  EARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAV 88
           +        S     EN  +    A       +     +L       D  H +       
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 89  LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL-LEAKANRYEQARNLFRQATKCNPKS 147
             +      +   L  K +     N   +  +        ++ E AR    +AT      
Sbjct: 65  TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124

Query: 148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI 207
             +WIA+      +  +  A   +  A Q            G+           ++    
Sbjct: 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184

Query: 208 GHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEW------ 261
             ++ P DP ++  + ++ ++      A K F  A E             W         
Sbjct: 185 ALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244

Query: 262 ---KEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS 318
              K      A + + +AL +     S      A G +   +GN   A   F ++L +  
Sbjct: 245 VCRKLKKYAEALDYHRQALVLIPQNAST---YSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 319 QSYITW 324
               + 
Sbjct: 302 DDTFSV 307

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 38/249 (15%), Positives = 71/249 (28%), Gaps = 42/249 (16%)

Query: 97  KKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ 156
           K +  ++ + +     N  +  +LA        ++    L     + +P   +       
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 157 MEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP 216
             ++         L  + V   P N  +W   G +     ++  G K             
Sbjct: 65  TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY-----YLMVGHKN------------ 107

Query: 217 VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERA 276
                             AR+   +A+ ++  + P WIA+G     E   D A   Y  A
Sbjct: 108 ----------------EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA 151

Query: 277 LSIDSTTESAARCLQAW---GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED 333
             +         C       G+      N   A R F  +L+I  +          +   
Sbjct: 152 AQLMK------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ 205

Query: 334 QGNSVRAEE 342
            G    AE+
Sbjct: 206 NGEWKTAEK 214

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 39/260 (15%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 93  QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASW- 151
             + K   +L +  ++    +            + N+  +   L  +     P +  SW 
Sbjct: 35  NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF 94

Query: 152 ---IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIG 208
                +  +  + E    AR+   +A         AW  +G   A     D+        
Sbjct: 95  AVGCYYLMVGHKNE---HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA 151

Query: 209 HAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDT 268
             +     + +  + L     + + LA + F +A  I P    V    G + ++ G   T
Sbjct: 152 AQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT 211

Query: 269 ARELYERALSIDSTTESAA---RCLQAW---GVLEQRVGNLSAARRLFRSSLNINSQSYI 322
           A + +  AL       +     +        G + +++   + A    R +L +  Q+  
Sbjct: 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS 271

Query: 323 TWMTWAQLEEDQGNSVRAEE 342
           T+     +    GN   A +
Sbjct: 272 TYSAIGYIHSLMGNFENAVD 291

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 26/341 (7%), Positives = 86/341 (25%), Gaps = 4/341 (1%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           +     P+      +          V     +  + +     E           +  L  
Sbjct: 97  QAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ-AHGLTPEQVVAIASHDGGKQALET 155

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           +     +   +       + A       +     +++   +L +             +  
Sbjct: 156 VQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 215

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
             +      ++   +  QA    P+   +  +    +   E       +  +A   +P+ 
Sbjct: 216 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
             A       +  +  + +   +L   H + P+  V + S    +    T      +  +
Sbjct: 276 VVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 335

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           A  + P+      +    +     +     +  +A  +      A       G  +Q + 
Sbjct: 336 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN---GGGKQALE 392

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
            +     +   +  +  +  +   +    ++      R   
Sbjct: 393 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLP 433

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 31/302 (10%), Positives = 80/302 (26%), Gaps = 9/302 (2%)

Query: 44  ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLL 103
           E+ +    W+        +  A EL       D G +        +   +        L 
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALT 61

Query: 104 AKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163
              L           +    +      ++   +  QA    P+   +  +    +   E 
Sbjct: 62  GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 121

Query: 164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA 223
                 +  +A   +P+   A       +  +  +     +L   H + P   V + S  
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNG 181

Query: 224 LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283
             +    T      +  +A  + P+      + G  +     +     +  +A  +    
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP-- 239

Query: 284 ESAARCLQAW---GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRA 340
           +       A    G  +Q +  +     +   +  +  Q  +   + +  ++      R 
Sbjct: 240 QQV----VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRL 295

Query: 341 EE 342
             
Sbjct: 296 LP 297

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 26/287 (9%), Positives = 77/287 (26%), Gaps = 1/287 (0%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           +     P+      + G        V     +  + +     +           +  L  
Sbjct: 199 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ-AHGLTPQQVVAIASNGGGKQALET 257

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           + +   +   +       + A    +  +     +++   +L +             +  
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
             +      ++   +  QA    P+   +  +    +   E       +  +A   +P+ 
Sbjct: 318 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
             A    G  +  +  + +   +L   H + P   V + S    +    T      +  +
Sbjct: 378 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQ 437

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAAR 288
           A  + P+      + G       ++       + AL+  +     A 
Sbjct: 438 AHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVAL 484

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 21/248 (8%), Positives = 63/248 (25%), Gaps = 1/248 (0%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARE 67
           P+      + G        V     +  + +     +        +  +  L  + +   
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQ-AHGLTPQQVVAIASNSGGKQALETVQRLLP 297

Query: 68  LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127
           +   +       + A       +     +++   +L +             +    +   
Sbjct: 298 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 357

Query: 128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHV 187
              ++   +  QA    P+   +  +    +   E       +  +A   +P+   A   
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 417

Query: 188 WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP 247
               +  +  + +   +L   H + P+  V + S         +          A     
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477

Query: 248 RHQPVWIA 255
               V +A
Sbjct: 478 NDHLVALA 485

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 74.3 bits (181), Expect = 2e-14
 Identities = 42/336 (12%), Positives = 86/336 (25%), Gaps = 29/336 (8%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           +    W +D     A   +    ++   AR++Y      T+G           L     +
Sbjct: 233 QRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKG---LKRNLPITLNQATES 289

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKK-ARQLLAKGLKFCGGNEYIYQTL 120
                  +D   +        W     LEL     K     +  +  +       I+  +
Sbjct: 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNM 349

Query: 121 A-LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAV---- 175
           A     K           +   +C P S     + S+                  +    
Sbjct: 350 ANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409

Query: 176 ------------------QASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD-P 216
                             Q   K  + + V+      +  +   +K+      +     P
Sbjct: 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP 469

Query: 217 VLLQSLALLEYK-YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYER 275
            +    A +EY        A K+     +           +             + L+E 
Sbjct: 470 DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES 529

Query: 276 ALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFR 311
           ++   S +       Q     E +VG+L++ R L +
Sbjct: 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 72.8 bits (177), Expect = 8e-14
 Identities = 31/311 (9%), Positives = 73/311 (23%), Gaps = 55/311 (17%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           +   +       +  +     +++  +     Y K  Q     +  +    +        
Sbjct: 334 QAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK 393

Query: 62  IGKARELFDASTVADKGHIAA----------------------WHGWAVLELRQGNIKKA 99
           I +      +        +AA                      +  +     R   +  +
Sbjct: 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS 453

Query: 100 RQLLAKGLKFCGGNEY-IYQTLALLEAKANR-YEQARNLFRQATKCNPKSCASWIAWSQM 157
           R++  K  +        IY   A +E   ++  + A  +     K           +   
Sbjct: 454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513

Query: 158 EMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPV 217
            +        + LFE ++     +     ++                             
Sbjct: 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIF----------------------------- 544

Query: 218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL 277
             Q +   E K  + N  R L +R  E  P    +       +  + N     EL     
Sbjct: 545 --QKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVLDVNYLQRLELDYMVR 602

Query: 278 SIDSTTESAAR 288
            +     +  R
Sbjct: 603 DVMPEAIALDR 613

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 63.1 bits (152), Expect = 8e-11
 Identities = 28/336 (8%), Positives = 84/336 (25%), Gaps = 30/336 (8%)

Query: 23  KQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA 82
           +Q +V   R +Y             +WQ +   E  +  +   R + + S          
Sbjct: 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLY 265

Query: 83  -----WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR-------Y 130
                        L     +     L K  ++      I+      E+            
Sbjct: 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHK 325

Query: 131 EQARNLFRQATKCNPKSCASWIAWSQMEMQQEN-NLAARQLFERAVQASPKNRFAWHVWG 189
            +   ++ QA +    +   W   +  + ++   +    +  +   Q  P +        
Sbjct: 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLS 385

Query: 190 IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA-SEIDPR 248
                   I + +               +L  +  +    +           A +++  +
Sbjct: 386 EQYELNTKIPEIET-------------TILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432

Query: 249 HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV-GNLSAAR 307
              V+  +     +   L  +R+++ +   +                +E  +  +   A 
Sbjct: 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD--IYLENAYIEYHISKDTKTAC 490

Query: 308 RLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEI 343
           ++    L   +        +           + + +
Sbjct: 491 KVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL 526

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 60.8 bits (146), Expect = 6e-10
 Identities = 44/344 (12%), Positives = 91/344 (26%), Gaps = 48/344 (13%)

Query: 44  ENPYIWQCWAVL---ENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL---RQGNIK 97
           E P     +  L      L    +  E FD            W     LE     + +  
Sbjct: 61  EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAA 120

Query: 98  KARQLLAKGLKFCGGN----------EYIYQTLALLEAKANRYEQARNLFRQA-TKC--- 143
               +LA+ L    GN           Y+ +   ++             F+    KC   
Sbjct: 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIF 180

Query: 144 NPKSCASWIAWSQMEMQ---------QENNLAARQLFERAVQASPKNRFA-WHVWGIFEA 193
            PKS   W  +               Q+     R+L++  +        + W  +  +E 
Sbjct: 181 EPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQ 240

Query: 194 NMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW 253
           ++  +   + + ++         +    L + +      NL   L +      P+     
Sbjct: 241 DVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR--NLPITLNQATESNLPKPNEYD 298

Query: 254 IAW-----GWMEWKEGN-------LDTAR--ELYERALSIDSTTESAARCLQAWGVLEQR 299
           +        W+ W+  N       L  AR   +Y +A                     ++
Sbjct: 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIW--FNMANYQGEK 356

Query: 300 VGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEI 343
             + +   +  +        S +   + ++  E        E  
Sbjct: 357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT 400

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 19/182 (10%), Positives = 52/182 (28%), Gaps = 26/182 (14%)

Query: 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
            ++               +  P     ++   +  +  +      + F++     P    
Sbjct: 42  TSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMAN 101

Query: 184 AWHVWGIFE---ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANL------ 234
            W +    E            + +L    +    +  L   L+ + Y     ++      
Sbjct: 102 IWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEE 161

Query: 235 ARKLFRRASEI--------DPRHQPVWIAW--------GWMEWKE-GNLDTARELYERAL 277
           AR +  +A ++        +P+    W  +           +++E   +   R+LY+  L
Sbjct: 162 ARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221

Query: 278 SI 279
             
Sbjct: 222 CQ 223

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 40/323 (12%), Positives = 92/323 (28%), Gaps = 36/323 (11%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQ--GENPYIWQCWAVLENKL 59
             +D  P++   Y     V     K   A       ++  Q   +          L  K 
Sbjct: 51  AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL---TKVIQLKMDFTAARLQRGHLLLKQ 107

Query: 60  GNIGKARELFDASTVADKGHIAAWHGWAVLE---------------LRQGNIKKARQLLA 104
           G + +A + F     ++          + L                   G+   A   L 
Sbjct: 108 GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167

Query: 105 KGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN 164
           K L+ C  +  + +  A    K     +A +  + A+K    +  ++   S +  Q  ++
Sbjct: 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227

Query: 165 LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGH------------AVN 212
             +       ++    ++  +  +   +     I+  ++L++ G                
Sbjct: 228 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287

Query: 213 PRDP----VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDT 268
           P          + +     K      A ++     +++P +             E   D 
Sbjct: 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347

Query: 269 ARELYERALSIDSTTESAARCLQ 291
           A + YE A   +   +     L+
Sbjct: 348 AIQDYETAQEHNENDQQIREGLE 370

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 48/307 (15%), Positives = 96/307 (31%), Gaps = 28/307 (9%)

Query: 58  KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
             G +  A   F A+   D  +  A++  A + L  G  K A   L K ++         
Sbjct: 38  AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR 97

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM----EMQQENNLA------- 166
                L  K  + ++A + F++  K NP       A SQ+    EMQ+  + A       
Sbjct: 98  LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157

Query: 167 ----ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSL 222
               A    ++ ++    +     +        G   K    LK    +   +      +
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217

Query: 223 ALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWME------------WKEGNLDTAR 270
           + L Y+     L+    R   ++D  H+  +  +  ++             ++G    A 
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277

Query: 271 ELYERALSIDST-TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQ 329
             YE  +  + +  E   R  +       +      A R+    L +   +       A+
Sbjct: 278 SKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337

Query: 330 LEEDQGN 336
               +  
Sbjct: 338 AYLIEEM 344

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 24/205 (11%), Positives = 57/205 (27%), Gaps = 15/205 (7%)

Query: 91  LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS 150
           L  G +  A       +     N   Y   A +     + + A     +  +      A+
Sbjct: 37  LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA 96

Query: 151 WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI---FEANMGFIDKGKKLLKI 207
            +    + ++Q     A   F++ ++++P               +       +       
Sbjct: 97  RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156

Query: 208 GH------------AVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIA 255
           G              V   D  L +  A    K      A    + AS++   +   +  
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216

Query: 256 WGWMEWKEGNLDTARELYERALSID 280
              + ++ G+ + +       L +D
Sbjct: 217 ISTLYYQLGDHELSLSEVRECLKLD 241

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 39/283 (13%), Positives = 82/283 (28%), Gaps = 29/283 (10%)

Query: 79  HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFR 138
           H    H   V    +    ++   + K           +  L      A +   A + F 
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMADVEK-----------HLELGKKLLAAGQLADALSQFH 50

Query: 139 QATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFI 198
            A   +P +  ++   + + +    + AA     + +Q       A    G      G +
Sbjct: 51  AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110

Query: 199 DKGKKLLKIGHAVNPRDPVLLQSLALL------EYKYSTANLARKL---------FRRAS 243
           D+ +   K     NP +    ++ + L      +   S A  A              +  
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170

Query: 244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNL 303
           E+      +         KEG    A    + A  + +    A         L  ++G+ 
Sbjct: 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA---FYKISTLYYQLGDH 227

Query: 304 SAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNL 346
             +    R  L ++      +  + Q+++       AEE+   
Sbjct: 228 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 34/302 (11%), Positives = 78/302 (25%), Gaps = 59/302 (19%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARE 67
            ++ +   +             A A   K        +  + +  A    K G   KA  
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDK-ILEVCVWDAELRELRAECFIKEGEPRKAIS 198

Query: 68  LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA-- 125
              A++     +  A++  + L  + G+ + +   + + LK    ++  +     ++   
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258

Query: 126 ----------KANRYEQARNLFRQATKCNPKSCASW--------IAWSQMEMQQENNLAA 167
                     +  RY  A + +    K  P                +S+ E   E    A
Sbjct: 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE----A 314

Query: 168 RQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY 227
            ++    +Q  P N  A              D+ +  L                     Y
Sbjct: 315 IRVCSEVLQMEPDNVNALK------------DRAEAYLIEE-----------------MY 345

Query: 228 KYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA 287
                  A + +  A E +   Q +       +                +  ++  +   
Sbjct: 346 D-----EAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400

Query: 288 RC 289
           + 
Sbjct: 401 KA 402

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 34/207 (16%), Positives = 74/207 (35%), Gaps = 5/207 (2%)

Query: 116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAV 175
            Y  L L   +    EQA+   R+A + +P S  +  A + +   +     A + + +A+
Sbjct: 39  AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL 98

Query: 176 QASPKNRFAWHVWGIFEANMGFIDKGKKLLK--IGHAVNPRDPVLLQSLALLEYKYSTAN 233
            +  +N    + +G F       ++  + L       + P    + ++L L+  +     
Sbjct: 99  ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158

Query: 234 LARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW 293
            A++ F ++  ++     V +    + +KE     AR+ Y+            AR L   
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN---ARSLLLG 215

Query: 294 GVLEQRVGNLSAARRLFRSSLNINSQS 320
             L +   +   A         +   S
Sbjct: 216 IRLAKVFEDRDTAASYGLQLKRLYPGS 242

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 31/213 (14%), Positives = 74/213 (34%), Gaps = 7/213 (3%)

Query: 1   MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG 60
           +K      E    Y+ LG    ++    +A+    K +      +       AV+     
Sbjct: 27  LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRK-ALEIDPSSADAHAALAVVFQTEM 85

Query: 61  NIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYI--YQ 118
               A E +  +  +D  +    + +      Q   ++A Q L +  +     E    ++
Sbjct: 86  EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE 145

Query: 119 TLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQAS 178
            L L+  +  +  QA+  F ++ + N    +  +  + +  ++   + ARQ ++   Q  
Sbjct: 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205

Query: 179 PKNRFAWHVWGIFEANMGFIDK----GKKLLKI 207
            +N  +  +           D     G +L ++
Sbjct: 206 GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 3/183 (1%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           K ++  P     + AL  V   + +   A   Y K + A+   N  +   +     +   
Sbjct: 62  KALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK-ALASDSRNARVLNNYGGFLYEQKR 120

Query: 62  IGKARELFD-ASTVADKGHIA-AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQT 119
             +A +    AS        +  +    ++ L+     +A++   K L+       +   
Sbjct: 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALE 180

Query: 120 LALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP 179
           +A L  K   Y  AR  +    +   ++  S +   ++    E+   A     +  +  P
Sbjct: 181 MADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240

Query: 180 KNR 182
            + 
Sbjct: 241 GSL 243

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 43/285 (15%), Positives = 103/285 (36%), Gaps = 27/285 (9%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           +      +        G     ++    A     K  +     N YI+   A++     +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM--ALIMADRND 285

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
             +    FD +   D  + + ++    +     N  +A +   K  +    N + Y  LA
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
            L  + N+++    LF +A +  P++      ++++   + +   A + ++ A++   K 
Sbjct: 346 CLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
              +         +  +     + K          +L ++  +  +       A  L  +
Sbjct: 406 DGIYV-------GIAPL-----VGKAT--------LLTRNPTVENFI-----EATNLLEK 440

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286
           AS++DPR +   I    M+ ++ ++D A  L+E +  +  T E  
Sbjct: 441 ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 46/342 (13%), Positives = 98/342 (28%), Gaps = 25/342 (7%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           K ++  P+  +  +          K A+A    +  S      +  I             
Sbjct: 64  KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP-MLERNLNKQA 122

Query: 62  IGKARELFDASTVA-------DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE 114
           + K +E F     A                          ++     +    L F   +E
Sbjct: 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182

Query: 115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA 174
                  L+   +N Y+++   + +A +   K                            
Sbjct: 183 SNEADKELMNGLSNLYKRSPESYDKADESFTK-------------AARLFEEQLDKNNED 229

Query: 175 VQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANL 234
            +   K   +    GIF+          + +K    + PR    +  +AL+    + +  
Sbjct: 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY-MALIMADRNDSTE 288

Query: 235 ARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWG 294
               F +A ++D  +  V+   G M +   N D A + +++A  +D         L    
Sbjct: 289 YYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL---A 345

Query: 295 VLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGN 336
            L  R         LF  +     ++      +A++  D+ +
Sbjct: 346 CLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND 387

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 37/234 (15%), Positives = 80/234 (34%), Gaps = 11/234 (4%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           K I+ +P     Y+ +  +++ ++   E    + K +      N  ++     +   L N
Sbjct: 262 KAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDK-ALKLDSNNSSVYYHRGQMNFILQN 319

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
             +A + FD +   D  +I  +   A L  R+        L ++  +       +    A
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWI---------AWSQMEMQQENNLAARQLFE 172
            +    N +++A   +  A +   K    ++                  EN + A  L E
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439

Query: 173 RAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE 226
           +A +  P++  A       +     ID+   L +    +       LQ++   E
Sbjct: 440 KASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 10/202 (4%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           K +     +   Y   G++        +A   + K ++    EN + +   A L  +   
Sbjct: 295 KALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK-AKELDPENIFPYIQLACLAYRENK 353

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
                 LF  +           + +A +   + +  KA +     ++     + IY  +A
Sbjct: 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA 413

Query: 122 LLEAKA---------NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFE 172
            L  KA           + +A NL  +A+K +P+S  + I  +QM++QQE+   A  LFE
Sbjct: 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473

Query: 173 RAVQASPKNRFAWHVWGIFEAN 194
            +   +             EA 
Sbjct: 474 ESADLARTMEEKLQAITFAEAA 495

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 29/188 (15%), Positives = 64/188 (34%), Gaps = 19/188 (10%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           K  +  PE+  PY+ L  +  +++K  +   ++++  +    E P +   +A +     +
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKND 387

Query: 62  IGKARELFD---------ASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG 112
             KA + +D                  +              N  +A  LL K  K    
Sbjct: 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447

Query: 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFE 172
           +E     LA ++ +    ++A  LF ++              +  E  Q    A     +
Sbjct: 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR---------TMEEKLQAITFAEAAKVQ 498

Query: 173 RAVQASPK 180
           + +++ P 
Sbjct: 499 QRIRSDPV 506

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 34/331 (10%), Positives = 90/331 (27%), Gaps = 28/331 (8%)

Query: 14  YVALGKVLSKQSKVAEARAIYAKGSQATQ-GENPYIWQCWAVLENKLGNIGKARELFDAS 72
               G    +  K  +A   Y   + A +  E+P  +   +     +G++ K  E+   +
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYY---NWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 73  TVADKGHIAAWHGWAVLELRQGNIKKARQLL-AKGLKFCGGNEYIYQTLALLEAKAN--R 129
                 +       A      G    A   L    L     +  I   L     K    +
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK 125

Query: 130 YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWG 189
            ++       AT    +        ++    ++ NL +                      
Sbjct: 126 LKEKFGDIDTATATPTELST---QPAKERKDKQENLPSVTSMASFFGIFKPE-------- 174

Query: 190 IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA----NLARKLFRRASEI 245
                  + +  +   ++ + ++       +S    +  ++ A               ++
Sbjct: 175 --LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232

Query: 246 DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSA 305
             +        G  ++ + +   A E  ++A+ +     S         ++     + + 
Sbjct: 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNS----YIYMALIMADRNDSTE 288

Query: 306 ARRLFRSSLNINSQSYITWMTWAQLEEDQGN 336
               F  +L ++S +   +    Q+     N
Sbjct: 289 YYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.9 bits (177), Expect = 6e-14
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 36/306 (11%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           K I    +     +  G +L KQ K+ EA   + K  ++    NP   +           
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSEQEEK----EAESQ 113

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           + KA E+                  A+      +   A   L K L+ C  +  + +  A
Sbjct: 114 LVKADEM------------QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
               K     +A +  + A+K    +  ++   S +  Q  ++  +       ++    +
Sbjct: 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGH------------AVNPRDPV----LLQSLALL 225
           +  +  +   +     I+  ++L++ G                P          + +   
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281

Query: 226 EYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES 285
             K      A ++     +++P +             E   D A + YE A   +   + 
Sbjct: 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341

Query: 286 AARCLQ 291
               L+
Sbjct: 342 IREGLE 347

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 49/311 (15%), Positives = 93/311 (29%), Gaps = 36/311 (11%)

Query: 58  KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
             G +  A   F A+   D  +  A++  A + L  G  K A   L K +          
Sbjct: 15  AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR 74

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM----EMQQENNLA------- 166
                L  K  + ++A + F++  K NP       A SQ+    EMQ+  + A       
Sbjct: 75  LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA 134

Query: 167 ----ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKG----KKLLKIGHAVNPRDPVL 218
               A    ++ ++    +     +        G   K     K   K+       +   
Sbjct: 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL----KSDNTEA 190

Query: 219 LQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW------------IAWGWMEWKEGNL 266
              ++ L Y+     L+    R   ++D  H+  +            I       ++G  
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 250

Query: 267 DTARELYERALSIDST-TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWM 325
             A   YE  +  + +  E   R  +       +      A R+    L +   +     
Sbjct: 251 TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310

Query: 326 TWAQLEEDQGN 336
             A+    +  
Sbjct: 311 DRAEAYLIEEM 321

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 23/216 (10%), Positives = 57/216 (26%), Gaps = 15/216 (6%)

Query: 80  IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQ 139
           +          L  G +  A       +     N   Y   A +     + + A     +
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 140 ATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI---FEANMG 196
                    A+ +    + ++Q     A   F++ ++++P  +            +    
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 197 FIDKGKKLLKIGH------------AVNPRDPVLLQSLALLEYKYSTANLARKLFRRASE 244
              +                      V   D  L +  A    K      A    + AS+
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182

Query: 245 IDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
           +   +   +     + ++ G+ + +       L +D
Sbjct: 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 23/229 (10%), Positives = 60/229 (26%), Gaps = 28/229 (12%)

Query: 117 YQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ 176
           +  L      A +   A + F  A   +P +  ++   + + +    + AA     + + 
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65

Query: 177 ASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLAR 236
                  A    G      G +D+ +   K     NP +    ++ + L           
Sbjct: 66  LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK--------- 116

Query: 237 KLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW--- 293
                             +     +   +   A    ++ L +           +     
Sbjct: 117 ----------ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV------WDAELRELR 160

Query: 294 GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
                + G    A    +++  + S +   +   + L    G+   +  
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 5/196 (2%)

Query: 116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAV 175
           I   LA+   +   Y QA      A K +PK+  +W+  +++    + N  A++ F +A+
Sbjct: 10  IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL 69

Query: 176 QASPKNRFAWHVWGIF-EANMGFIDKGKKLLK--IGHAVNPRDPVLLQSLALLEYKYSTA 232
              P +    + +G F    +    +        +     P   +   +  +   K    
Sbjct: 70  SIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129

Query: 233 NLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA 292
            LA    +R+    P+  P +      +   G L  A   +++  S        A  L  
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE--VLQADDLLL 187

Query: 293 WGVLEQRVGNLSAARR 308
              + + +GN  AA  
Sbjct: 188 GWKIAKALGNAQAAYE 203

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 34/205 (16%), Positives = 64/205 (31%), Gaps = 46/205 (22%)

Query: 159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVL 218
           M+ ++   A    E A+++ PKN  AW                                +
Sbjct: 19  MRGQDYRQATASIEDALKSDPKNELAWL-------VRA--------------------EI 51

Query: 219 LQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKE-GNLDTARELYERAL 277
            Q L + +        A++ FR+A  I P    +   +GW           +   +++AL
Sbjct: 52  YQYLKVND-------KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104

Query: 278 SIDSTTESAARCLQAW---GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQ 334
           +  +          A    G+   + G    A    + SL    Q    +   A+ +   
Sbjct: 105 ADPTYPTPY----IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160

Query: 335 GNSVRAEEIRNLYFQQRTEVVDDAS 359
           G    A+     YF++    V+   
Sbjct: 161 GQLGDADY----YFKKYQSRVEVLQ 181

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 26/191 (13%), Positives = 54/191 (28%), Gaps = 6/191 (3%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARE 67
            +       L     +     +A A     +  +  +N   W   A +   L    KA+E
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIED-ALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63

Query: 68  LFDASTVADKGHIAAWH--GWAVLELRQGNIKKARQLLAKGLKFCGGNEYI--YQTLALL 123
            F  +           +  GW  L  R     ++     K L                + 
Sbjct: 64  SFRQALSIKPDSAEINNNYGWF-LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122

Query: 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
            AK  ++  A    +++    P+   ++   ++ +M       A   F++        + 
Sbjct: 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182

Query: 184 AWHVWGIFEAN 194
              + G   A 
Sbjct: 183 DDLLLGWKIAK 193

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 32/227 (14%), Positives = 61/227 (26%), Gaps = 41/227 (18%)

Query: 58  KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
           +  +  +A    + +  +D  +  AW   A +        KA++   + L     +  I 
Sbjct: 20  RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN 79

Query: 118 QTL-ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM---EMQQENNLAARQLFER 173
                 L  + NR  ++   F +A          +IA         +Q     A    +R
Sbjct: 80  NNYGWFLCGRLNRPAESMAYFDKALADPTYP-TPYIANLNKGICSAKQGQFGLAEAYLKR 138

Query: 174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN 233
           ++ A P+   A+         +         L                            
Sbjct: 139 SLAAQPQFPPAFK-------ELARTKMLAGQLG--------------------------- 164

Query: 234 LARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
            A   F++        Q   +  GW       L  A+  YE    + 
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLLGWKI--AKALGNAQAAYEYEAQLQ 209

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 22/173 (12%), Positives = 53/173 (30%), Gaps = 6/173 (3%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCW-AVLENKLG 60
             +   P++   ++   ++        +A+  + + + + + ++  I   +   L  +L 
Sbjct: 33  DALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ-ALSIKPDSAEINNNYGWFLCGRLN 91

Query: 61  NIGKARELFD-ASTVADKGHIA-AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQ 118
              ++   FD A           A     +   +QG    A   L + L         ++
Sbjct: 92  RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK 151

Query: 119 TLALLEAKANRYEQARNLFRQATKCNPKSCAS--WIAWSQMEMQQENNLAARQ 169
            LA  +  A +   A   F++         A    + W   +       A   
Sbjct: 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEY 204

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 51/358 (14%), Positives = 111/358 (31%), Gaps = 25/358 (6%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCW---AVLENK 58
             I+  P +   Y  +         + +        ++A +   P   +     A     
Sbjct: 50  YAIELDPNEPVFYSNISACYISTGDLEKVIEFT---TKALE-IKPDHSKALLRRASANES 105

Query: 59  LGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG------ 112
           LGN   A       ++      A+        L +  +K   + L+K             
Sbjct: 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165

Query: 113 --NEYIYQTLALLEAKA----NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL- 165
               +     + LE  +    + Y+ A  L   A +    +       +   + +  ++ 
Sbjct: 166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY 225

Query: 166 -AARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLAL 224
            +                 A    GIF      +   + LL+    ++P  P     LAL
Sbjct: 226 HSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLAL 284

Query: 225 LEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE 284
                  +    K F++A +++P + P +   G M +   +   A+E +++A S++    
Sbjct: 285 TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344

Query: 285 SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
                L     L  + G  + +   F  +             +A++  D+G+   A +
Sbjct: 345 YPYIQL---ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 45/304 (14%), Positives = 99/304 (32%), Gaps = 24/304 (7%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQ-GENPYIWQCWAVLENKLG 60
                           G     ++ + +A+ +     ++      P  +   A+      
Sbjct: 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLL---QESINLHPTPNSYIFLALTLADKE 290

Query: 61  NIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL 120
           N  +  + F  +   +  +   ++    +     + K A++   K       N Y Y  L
Sbjct: 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350

Query: 121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK 180
           A L  K  ++ ++   F +     P        ++++   + +   A + ++ A +    
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410

Query: 181 NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR 240
                         +G +        IG A             L E K+   N A KL  
Sbjct: 411 QEKIHV-------GIGPL--------IGKATILARQSSQDPTQLDEEKF---NAAIKLLT 452

Query: 241 RASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA--ARCLQAWGVLEQ 298
           +A E+DPR +   I    ++ +   +D A EL+E +  +  T +    A        +++
Sbjct: 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQK 512

Query: 299 RVGN 302
           R+  
Sbjct: 513 RLRA 516

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 37/296 (12%), Positives = 83/296 (28%), Gaps = 24/296 (8%)

Query: 58  KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
              N  +A + +  +   D      +   +   +  G+++K  +   K L+    +    
Sbjct: 37  TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKAL 96

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE----NNLAARQLFER 173
              A        +  A       +       AS     +  + ++     N    +   R
Sbjct: 97  LRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR 156

Query: 174 AVQASPKNRFAWHVWGIFE--------ANMGFIDKGKKLLKIGHAVNP--RDPVLLQSLA 223
             Q  P N      +GIF+              D    LL           D   L +  
Sbjct: 157 GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216

Query: 224 LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283
           LL       +           +           G   + + NL  A+ L + ++++  T 
Sbjct: 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP 276

Query: 284 ESAARCLQAW---GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGN 336
                   ++    +      N     + F+ ++++N +   T+    Q+     +
Sbjct: 277 N-------SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 21/149 (14%), Positives = 42/149 (28%)

Query: 127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWH 186
                +     R A +  P+   +W+  +  E+   +  A     +R +   P +  A  
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 187 VWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID 246
             G          +   LL+      P  P +   L         A  A   + RA ++ 
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121

Query: 247 PRHQPVWIAWGWMEWKEGNLDTARELYER 275
           P    +         +  +      L  +
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQ 150

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 33/194 (17%), Positives = 57/194 (29%)

Query: 60  GNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQT 119
            +  +      A+         AW   A  EL  G+       + +GL    G+      
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 120 LALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP 179
           L  +     R+ +A  L +QA+   P+     +             AA   + RA Q  P
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 180 KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLF 239
           +  +       +   +        L     A   +    ++  A L    S A       
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACAR 182

Query: 240 RRASEIDPRHQPVW 253
            RA  I    +P+ 
Sbjct: 183 TRAQAIAASVRPLA 196

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 3/145 (2%)

Query: 166 AARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALL 225
                   AV+  P++  AW +    E  MG    G+  ++ G A++P  P  +  L  +
Sbjct: 7   RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66

Query: 226 EYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES 285
            +       A  L ++AS+  P H  + +  G      G  + A   Y RA  +      
Sbjct: 67  RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126

Query: 286 AARCLQAWGVLEQRVGNLSAARRLF 310
                       +R+ +  A   L 
Sbjct: 127 I---TAQLLNWRRRLCDWRALDVLS 148

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 17/133 (12%), Positives = 41/133 (30%)

Query: 93  QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI 152
             +  +    L   ++    +   +  LA  E             ++    +P    +  
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 153 AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN 212
              ++   Q+ +  A  L ++A  A+P++       G    + G  +         H + 
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121

Query: 213 PRDPVLLQSLALL 225
           P +P +   L   
Sbjct: 122 PEEPYITAQLLNW 134

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 22/159 (13%), Positives = 41/159 (25%), Gaps = 1/159 (0%)

Query: 28  AEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA 87
                      +  + ++   W   A  E  +G+                GH  A     
Sbjct: 6   PRELLQLRAAVRH-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 88  VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS 147
            +   Q    +A  LL +       +  I   L      A + E A   + +A +  P+ 
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124

Query: 148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWH 186
                       +  +  A   L  +   A  +   A  
Sbjct: 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 22/186 (11%), Positives = 45/186 (24%), Gaps = 5/186 (2%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
             + + P+D   ++ L                  +G       +P        +      
Sbjct: 14  AAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-HPGHPEAVARLGRVRWTQQR 72

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
             +A  L   ++ A   H              G  + A     +  +      YI   L 
Sbjct: 73  HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132

Query: 122 LLEAKA---NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQAS 178
               +       +      R A      +   +   S  +      LA  +   +A+ AS
Sbjct: 133 NWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS-EDASAAEQLACARTRAQAIAAS 191

Query: 179 PKNRFA 184
            +    
Sbjct: 192 VRPLAP 197

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 66.4 bits (161), Expect = 8e-12
 Identities = 32/200 (16%), Positives = 72/200 (36%), Gaps = 1/200 (0%)

Query: 79  HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFR 138
           H  + +  A ++  QGNI++A +L  K L+        +  LA +  +  + ++A   ++
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67

Query: 139 QATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFI 198
           +A + +P    ++        + ++   A Q + RA+Q +P    A         + G I
Sbjct: 68  EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127

Query: 199 DKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGW 258
            +     +    + P  P    +LA             +  ++   I    Q        
Sbjct: 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA-DQLEKNRLPS 186

Query: 259 MEWKEGNLDTARELYERALS 278
           +      L      + +A++
Sbjct: 187 VHPHHSMLYPLSHGFRKAIA 206

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 64.8 bits (157), Expect = 3e-11
 Identities = 30/173 (17%), Positives = 60/173 (34%)

Query: 120 LALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP 179
           LA ++ +    E+A  L+R+A +  P+  A+    + +  QQ     A   ++ A++ SP
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 180 KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLF 239
               A+   G     M  +    +       +NP       +LA +         A   +
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 240 RRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA 292
           R A ++ P     +           +     E  ++ +SI +      R    
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 187

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 62.5 bits (151), Expect = 2e-10
 Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 9/220 (4%)

Query: 53  AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG 112
           A ++ + GNI +A  L+  +        AA    A +  +QG +++A     + ++    
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFE 172
               Y  +     +    + A   + +A + NP    +    + +     N   A   + 
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135

Query: 173 RAVQASPKNRFAWHVWGIFEANMGFIDKG----KKLLKIG--HAVNPRDPVLLQSLALL- 225
            A++  P    A+         +          KKL+ I        R P +    ++L 
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLY 195

Query: 226 --EYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKE 263
              + +  A   R       +I+  H+P +     ++  +
Sbjct: 196 PLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSD 235

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.8 bits (144), Expect = 1e-09
 Identities = 34/236 (14%), Positives = 66/236 (27%), Gaps = 4/236 (1%)

Query: 144 NPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK 203
            P    S    + ++ +Q N   A +L+ +A++  P+   A           G + +   
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 204 LLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKE 263
             K    ++P       ++     +      A + + RA +I+P           +    
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 264 GNLDTARELYERALSIDSTTESA----ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ 319
           GN+  A   Y  AL +      A    A CLQ           +     +    L  N  
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184

Query: 320 SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRI 375
             +            G      E        +  V+    +       +     R+
Sbjct: 185 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRV 240

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 26/166 (15%), Positives = 59/166 (35%), Gaps = 3/166 (1%)

Query: 177 ASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLAR 236
           + P +  + +     +   G I++  +L +    V P       +LA +  +      A 
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 237 KLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVL 296
             ++ A  I P     +   G    +  ++  A + Y RA+ I+    + A        +
Sbjct: 64  MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP---AFADAHSNLASI 120

Query: 297 EQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
            +  GN+  A   +R++L +       +   A   +   +    +E
Sbjct: 121 HKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 22/184 (11%), Positives = 54/184 (29%), Gaps = 1/184 (0%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARE 67
           P        L  +  +Q  + EA  +Y K +     E        A +  + G + +A  
Sbjct: 6   PTHADSLNNLANIKREQGNIEEAVRLYRK-ALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 68  LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127
            +  +         A+           +++ A Q   + ++        +  LA +   +
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHV 187
               +A   +R A K  P    ++   +       +     +  ++ V           +
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184

Query: 188 WGIF 191
             + 
Sbjct: 185 PSVH 188

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 3/135 (2%)

Query: 208 GHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLD 267
           G    P     L +LA ++ +      A +L+R+A E+ P           +  ++G L 
Sbjct: 1   GPGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60

Query: 268 TARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTW 327
            A   Y+ A+ I  T   A   +   G   + + ++  A + +  ++ IN          
Sbjct: 61  EALMHYKEAIRISPTFADAYSNM---GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117

Query: 328 AQLEEDQGNSVRAEE 342
           A + +D GN   A  
Sbjct: 118 ASIHKDSGNIPEAIA 132

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 62.8 bits (152), Expect = 3e-11
 Identities = 34/262 (12%), Positives = 71/262 (27%), Gaps = 17/262 (6%)

Query: 93  QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI 152
            G+ ++      +        E   +    L        +   +  +    +     +  
Sbjct: 12  IGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVR 69

Query: 153 AWSQMEMQQENNLAARQLFERAV--QASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA 210
            +++         A     +R +       N     +           D   + L     
Sbjct: 70  MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH---- 125

Query: 211 VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG--NLDT 268
                   +     +  K    +LARK  ++  + D       +A  W+    G   L  
Sbjct: 126 -QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 269 ARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWA 328
           A  +++      S T      L          G   AA  + + +L+ +S    T +   
Sbjct: 185 AYYIFQEMADKCSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241

Query: 329 QLEEDQGNSVRAEEIRNLYFQQ 350
            L +  G   +  E+ N Y  Q
Sbjct: 242 VLSQHLG---KPPEVTNRYLSQ 260

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 59.0 bits (142), Expect = 8e-10
 Identities = 27/232 (11%), Positives = 61/232 (26%), Gaps = 10/232 (4%)

Query: 5   DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKG-SQATQGENPYIWQCWAVLENKLGNIG 63
                + +      + L+  S+     A   +  S++    N       A +     N  
Sbjct: 59  PSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPD 118

Query: 64  KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA-- 121
            A              +        + L+   +  AR+ L K               A  
Sbjct: 119 AALRTLH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWV 173

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
            L A   + + A  +F++       +       +   M Q    AA  + + A+     +
Sbjct: 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233

Query: 182 RFAWHVWGIFEANMG-FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA 232
                   +   ++G   +   + L      +   P  ++     E  +   
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP-FIKEYRAKENDFDRL 284

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 27/202 (13%), Positives = 62/202 (30%), Gaps = 38/202 (18%)

Query: 102 LLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161
                 K    +  +   LAL   K   Y++A   +++  +  P +     A ++M++ +
Sbjct: 42  YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101

Query: 162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG--FIDKGKKLLKIGHAVNPRDPVLL 219
                A +++E+ +Q    N  A          +G  +    ++  K             
Sbjct: 102 GQEKDALRMYEKILQLEADNLAANI-------FLGNYYYLTAEQEKK------------- 141

Query: 220 QSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI 279
                            +   +      + Q      G  +      + AR   ++ +  
Sbjct: 142 ---------------KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186

Query: 280 DSTTESAARCLQAWGVLEQRVG 301
             +TE A + L     +E+ V 
Sbjct: 187 FPSTE-AQKTLDKILRIEKEVN 207

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 1/153 (0%)

Query: 30  ARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL 89
               Y          +  +    A+   K  N  KA   +         ++      A +
Sbjct: 38  TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97

Query: 90  ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA-LLEAKANRYEQARNLFRQATKCNPKSC 148
           ++ +G  K A ++  K L+    N      L       A + ++      +      K  
Sbjct: 98  QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ 157

Query: 149 ASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
            +       ++       AR   ++ +   P  
Sbjct: 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 3e-09
 Identities = 24/295 (8%), Positives = 72/295 (24%), Gaps = 5/295 (1%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARE 67
           P+      +          V     +  + +                 +  L  + +   
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQ-THGLTPAQVVAIASHDGGKQALETVQQLLP 484

Query: 68  LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127
           +   +       + A       +     +++   +L +             +    +   
Sbjct: 485 VLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 544

Query: 128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHV 187
              ++   +  QA    P    +  +    +   E       +  +A   +     A   
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIAS 604

Query: 188 WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP 247
               +  +  + +   +L   H + P   V + S    +    T      +  +A  + P
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664

Query: 248 RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA----ARCLQAWGVLEQ 298
                  + G  +     +     +  +A  +      A        QA   +++
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQR 719

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 6e-09
 Identities = 25/341 (7%), Positives = 81/341 (23%), Gaps = 5/341 (1%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
             ++  P       +          V     +  +    T              +  L  
Sbjct: 183 APLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP-AQVVAIASHDGGKQALET 241

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           + +   +   +       + A       +     +++   +L +             +  
Sbjct: 242 MQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHG 301

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
             +      ++   +  QA    P    +  +    +   E       +  +A   +P  
Sbjct: 302 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
             A    G  +  +  + +   +L   H + P   V + S         T      +  +
Sbjct: 362 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQ 420

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
           A  + P       +    +     +     +  +   +      A   + +    +Q + 
Sbjct: 421 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA---IASHDGGKQALE 477

Query: 302 NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
            +     +   +  +     +   +    ++      R   
Sbjct: 478 TVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLP 518

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 24/335 (7%), Positives = 82/335 (24%), Gaps = 5/335 (1%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARE 67
           P+      +          V     +  + +     +           +  L  + +   
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLCQ-AHGLTPDQVVAIASNGGGKQALETVQRLLP 383

Query: 68  LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127
           +   +       + A       +     +++   +L +             +    +   
Sbjct: 384 VLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 442

Query: 128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHV 187
              ++   +  Q     P    +  +    +   E       +  +A   +P    A   
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIAS 502

Query: 188 WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP 247
               +  +  + +   +L   H + P   V + S    +    T      +  +A  + P
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562

Query: 248 RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAAR 307
                  + G  +     +     +  +A  +      A   + +    +Q +  +    
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVA---IASNIGGKQALETVQRLL 619

Query: 308 RLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
            +   +  +     +   +    ++      R   
Sbjct: 620 PVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLP 654

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 25/274 (9%), Positives = 65/274 (23%), Gaps = 8/274 (2%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARE 67
                   +          V     +  + +                 +  L  + +   
Sbjct: 596 QVQVVAIASNIGGKQALETVQRLLPVLCQ-AHGLTPAQVVAIASHDGGKQALETVQRLLP 654

Query: 68  LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127
           +   +       + A       +     +++   +L +             +    +   
Sbjct: 655 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQAL 714

Query: 128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHV 187
              ++   +  QA    P    +  +    +   E       +  +A   +P    A   
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 774

Query: 188 WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP 247
               +  +  + +   +L   H +     V + S    +    T      +  +A  +  
Sbjct: 775 NIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQ 834

Query: 248 RHQPVWIAWGWMEWKEGNLDTARELYERALSIDS 281
             Q V IA             A E  +R L +  
Sbjct: 835 -DQVVAIAS------NIGGKQALETVQRLLPVLC 861

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 22/278 (7%), Positives = 65/278 (23%), Gaps = 8/278 (2%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
           +     P       +          V     +  +    T  +           +  L  
Sbjct: 624 QAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP-DQVVAIASNGGGKQALET 682

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           + +   +   +    +  + A       +     +++   +L +             +  
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 742

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
             +      ++   +  QA    P    +  +    +   E       +  +    +   
Sbjct: 743 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQ 802

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241
             A       +  +  + +   +L   H +     V + S    +    T      +  +
Sbjct: 803 VVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQ 862

Query: 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI 279
              + P      +A             A E  +R L +
Sbjct: 863 DHGLTPDQV---VAIAS----NIGGKQALETVQRLLPV 893

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 19/227 (8%), Positives = 59/227 (25%), Gaps = 3/227 (1%)

Query: 116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAV 175
           + +  +   A       A  L     + +            +   +  + +   L    +
Sbjct: 126 VGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPL 185

Query: 176 QASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA 235
             +P    A       +  +  + +   +L   H + P   V + S    +    T    
Sbjct: 186 NLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245

Query: 236 RKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGV 295
             +  +A  + P       +    +     +     +  +A  +      A   + + G 
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVA---IASHGG 302

Query: 296 LEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
            +Q +  +     +   +  +     +   +    ++      R   
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLP 349

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 31/243 (12%), Positives = 61/243 (25%), Gaps = 25/243 (10%)

Query: 121 ALLEAKANRYEQARNLFRQATKCNPKSCASW----IAWSQMEMQQENNLAARQLFERAVQ 176
              +      E+      +          +      A +      + +  A  L  +AV+
Sbjct: 75  RKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNV---TPDYSPEAEVLLSKAVK 131

Query: 177 ASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLAR 236
             P+   AW+  G      G +                + V LQ+L+++  +  T +   
Sbjct: 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDE 190

Query: 237 KL---------FRRASEIDPRHQPVWI--------AWGWMEWKEGNLDTARELYERALSI 279
                       + A ++D      W          +            A   Y +A  +
Sbjct: 191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250

Query: 280 DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVR 339
           D    S          L +   +   A   F  +  ++           QL E       
Sbjct: 251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310

Query: 340 AEE 342
             E
Sbjct: 311 LLE 313

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 33/241 (13%), Positives = 72/241 (29%), Gaps = 24/241 (9%)

Query: 60  GNIGKARELFDASTVADKGHIAAWH--GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
             + K  +  +    + +    A    G A L +      +A  LL+K +K        +
Sbjct: 82  EEMEKTLQQMEEVLGSAQVEAQALMLKGKA-LNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCA--------SWIAWSQMEMQQENNLAARQ 169
             L  +  K      A   F  A        +          +     +    + + + +
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

Query: 170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV------------NPRDPV 217
             + AVQ    +  +W++ G    ++ + + G+       A+               +P 
Sbjct: 201 QAKLAVQMDVLDGRSWYILGNAYLSL-YFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259

Query: 218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL 277
           L  + A L     +   A + F +A+ +DP           +      L +  E   +  
Sbjct: 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319

Query: 278 S 278
            
Sbjct: 320 P 320

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 21/140 (15%), Positives = 51/140 (36%), Gaps = 4/140 (2%)

Query: 156 QMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD 215
           Q   QQ      + L +  ++A+P+N   W + G +              +    +   +
Sbjct: 19  QFASQQNPEAQLQAL-QDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77

Query: 216 PVLLQSLALLEY---KYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAREL 272
             L  +LA + Y           R +  +A  +D       +      + + N   A EL
Sbjct: 78  AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIEL 137

Query: 273 YERALSIDSTTESAARCLQA 292
           +++ + ++S   +  + +++
Sbjct: 138 WQKVMDLNSPRINRTQLVES 157

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 3/109 (2%)

Query: 91  LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS 150
             Q N +   Q L   ++    N   +  L       N Y  +   +RQA +   ++   
Sbjct: 21  ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80

Query: 151 WIAWSQMEMQQEN---NLAARQLFERAVQASPKNRFAWHVWGIFEANMG 196
           + A + +   Q +       R + ++A+        A  +         
Sbjct: 81  YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQA 129

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 3/125 (2%)

Query: 60  GNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQT 119
            N     +       A+  +   W       L Q +   +     + L+  G N  +Y  
Sbjct: 24  QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA 83

Query: 120 LA---LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ 176
           LA     +A  +   Q R +  +A   +     + +  +     Q N   A +L+++ + 
Sbjct: 84  LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143

Query: 177 ASPKN 181
            +   
Sbjct: 144 LNSPR 148

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWA---VLENKLGNIGK 64
           P++   +  LG+    Q+  + +   Y + +   +GEN  ++   A     +       +
Sbjct: 41  PQNSEQWALLGEYYLWQNDYSNSLLAYRQ-ALQLRGENAELYAALATVLYYQASQHMTAQ 99

Query: 65  ARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLK 108
            R + D +   D   I A    A     Q N  +A +L  K + 
Sbjct: 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 74/571 (12%), Positives = 152/571 (26%), Gaps = 198/571 (34%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGK--- 64
                       +LSKQ ++ + + +     +  +    ++       + +   + +   
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQ-KFV----EEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 65  -ARE-LFDASTVADKGHIAAWHGWAVLELRQG--NIKKARQLLAKGLKFCGGNEYIYQTL 120
             R+ L++ + V  K ++        L+LRQ    ++ A+ +L  G+   G        +
Sbjct: 114 EQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-----TWV 166

Query: 121 ALLEAKANRYEQAR--NLFRQATKCNPKSCASWIAWSQ-------MEMQQ------ENNL 165
           AL    + + +      +F             W+           +EM Q      + N 
Sbjct: 167 ALDVCLSYKVQCKMDFKIF-------------WLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 166 AARQLFERA-------VQASPKNRFAW-----------HVW--GIFEANMGFIDKGKKLL 205
            +R             +QA  +                +V     + A   F +   K+L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---F-NLSCKIL 269

Query: 206 KIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGN 265
                +  R   +   L+     + + +                                
Sbjct: 270 -----LTTRFKQVTDFLSAATTTHISLDHHSMTL-------------------------T 299

Query: 266 LDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWM 325
            D  + L  + L             +      +R+  ++ + R   +          TW 
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPR----EVLTTNPRRLSIIAESIRDGLA----------TWD 345

Query: 326 TWAQLEEDQGNSVRA--------EEIRNLY-----FQQRTEVVDDAS---------W--- 360
            W  +  D+  ++           E R ++     F         A          W   
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP------PSAHIPTILLSLIWFDV 399

Query: 361 ----VMGFMD------------------IIDPALDRIKQLLN---LEKS---SYKEPSAY 392
               VM  ++                  I    L+   +L N   L +S    Y  P  +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 393 SPGD-NESTDDEASVSRYSGLYVG------NDLESASGFD---LD-DFIRNKL------- 434
              D      D+     Y   ++G         E  + F    LD  F+  K+       
Sbjct: 460 DSDDLIPPYLDQ-----YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 435 NLDPDQLDVLLE-KTSNPSVVRKVNYPRRRI 464
           N     L+ L + K   P +        R +
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLV 545

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 44/290 (15%), Positives = 83/290 (28%), Gaps = 52/290 (17%)

Query: 78  GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQ-----TLALLEAKANRYEQ 132
               A    A + +  GN  +A +L    L+      +  +      L  +        +
Sbjct: 14  AEFNALR--AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTR 71

Query: 133 ARNLFRQATKCN------PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWH 186
           +  L +Q  +          +  S I  S++   Q     A +  E+A Q   +      
Sbjct: 72  SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131

Query: 187 VWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID 246
               F                          L++  A L + ++  + A    R   E+ 
Sbjct: 132 PMHEF--------------------------LVRIRAQLLWAWARLDEAEASARSGIEVL 165

Query: 247 PRHQPVWIAW-----GWMEWKEGNLDTARELYERALSIDSTTESA----ARCLQAWGVLE 297
             +QP                 G+LD AR    R  ++    +      +   +   +  
Sbjct: 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225

Query: 298 QRVGNLSAARRLFRSSLNI----NSQSYITWMTWAQLEEDQGNSVRAEEI 343
           Q  G+ +AA    R +       N      W   A+ +   G    AE +
Sbjct: 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV 275

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 33/281 (11%), Positives = 71/281 (25%), Gaps = 47/281 (16%)

Query: 59  LGNIGKARELFDASTVADKGH------IAAWHGWAVLELRQGNIKKARQLLAKGL----- 107
            G + ++  L   +    + H      + +    + +   QG ++ A +   K       
Sbjct: 66  KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 125

Query: 108 ---KFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAW-----SQMEM 159
              +    +E++ +  A L     R ++A    R   +                  Q  +
Sbjct: 126 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185

Query: 160 QQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL 219
            + +   AR    R        ++                                    
Sbjct: 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI---------------------- 223

Query: 220 QSLALLEYKYSTA-NLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALS 278
                +    + A N  R   +     +   Q  W      +   G  + A  + E    
Sbjct: 224 --YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281

Query: 279 IDSTT---ESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316
              +        R L     L  + G  S A+R+   +L +
Sbjct: 282 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 29/234 (12%), Positives = 71/234 (30%), Gaps = 31/234 (13%)

Query: 5   DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKL----G 60
           +  P          ++L   +++ EA A    G +      P        +  +     G
Sbjct: 129 EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG 188

Query: 61  NIGKARELFD------ASTVADKGHIA-AWHGWAVLELRQGNIKKARQLLAKGLKFCGGN 113
           ++  AR   +       +       I+ A     +     G+   A   L    K    N
Sbjct: 189 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248

Query: 114 EYIYQ----TLALLEAKANRYEQARNLFRQA------TKCNPKSCASWIAWSQMEMQQEN 163
            +  Q     +A  +     +E A  +  +        +       + +  +Q+  Q   
Sbjct: 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308

Query: 164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPV 217
              A+++   A++ + +  F  H          F+ +G+ + +    +   + +
Sbjct: 309 KSDAQRVLLDALKLANRTGFISH----------FVIEGEAMAQQLRQLIQLNTL 352

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 1/113 (0%)

Query: 114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFER 173
           + IY   A       R E+A   FR     +  +    +  + +   +E    A  L+  
Sbjct: 37  DDIYS-YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV 95

Query: 174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE 226
           A      +       G  +  +    K K+  ++    +  + + +++ + L+
Sbjct: 96  AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLD 148

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 12/147 (8%)

Query: 190 IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH 249
           I  A +  I+ G  L  I +A+       + S A   Y       A   FR     D  +
Sbjct: 11  ISTAVIDAINSGATLKDI-NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 250 QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA----ARCLQAWGVLEQRVGNLSA 305
               +    +   +     A +LY  A ++     +      +C          +     
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-------LKAPLK 122

Query: 306 ARRLFRSSLNINSQSYITWMTWAQLEE 332
           A+  F   +  ++   +     + L+ 
Sbjct: 123 AKECFELVIQHSNDEKLKIKAQSYLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 1/118 (0%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARE 67
            +      +       + ++ EA   +          N       A +        +A +
Sbjct: 33  DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-DFYNVDYIMGLAAIYQIKEQFQQAAD 91

Query: 68  LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA 125
           L+  +    K            +LR     KA++     ++     +   +  + L+A
Sbjct: 92  LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 18/109 (16%), Positives = 39/109 (35%)

Query: 76  DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARN 135
               +   + +A     +G I++A         +   N      LA +     +++QA +
Sbjct: 32  PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD 91

Query: 136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFA 184
           L+  A               Q +++ +  L A++ FE  +Q S   +  
Sbjct: 92  LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLK 140

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 12/88 (13%), Positives = 27/88 (30%)

Query: 58  KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
             G I +A   F    + D  ++    G A +   +   ++A  L A        +    
Sbjct: 48  NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNP 145
                 + +     +A+  F    + + 
Sbjct: 108 FHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 15/136 (11%), Positives = 37/136 (27%), Gaps = 3/136 (2%)

Query: 160 QQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL 219
              + + +    +             + +     N G I++ +   +     +  +   +
Sbjct: 14  AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73

Query: 220 QSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI 279
             LA +         A  L+  A  +           G  + +      A+E +E  +  
Sbjct: 74  MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

Query: 280 ---DSTTESAARCLQA 292
              +     A   L A
Sbjct: 134 SNDEKLKIKAQSYLDA 149

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 35/274 (12%), Positives = 81/274 (29%), Gaps = 35/274 (12%)

Query: 10  DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCW---AVLENKLGNIGKAR 66
             R    L   L    +     A   +   +    +    Q      VL + LG    AR
Sbjct: 4   SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63

Query: 67  ELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK 126
             F  +          ++   +   + GN   A +     L+      Y +    +    
Sbjct: 64  NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123

Query: 127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWH 186
             R + A++      + +P      + W  +  Q+ +   A+++ ++  + S K ++ W+
Sbjct: 124 GGRDKLAQDDLLAFYQDDPNDPFRSL-WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN 182

Query: 187 VWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID 246
           +       +G I +   +                               +      + + 
Sbjct: 183 IVEF---YLGNISEQTLM----------------------------ERLKADATDNTSLA 211

Query: 247 PRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
                     G      G+LD+A  L++ A++ +
Sbjct: 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 34/256 (13%), Positives = 75/256 (29%), Gaps = 29/256 (11%)

Query: 82  AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR---NLFR 138
               +A    +  N  +A ++  K       + YIY   A+   +  +Y+ A+     + 
Sbjct: 5   VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64

Query: 139 QATKCNPKSCASW----IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN 194
                     A +        +          A Q ++ AV         +   G +  N
Sbjct: 65  SKVNATKAKSADFEYYGKILMKKGQDSL----AIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 195 MGFIDKG----KKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ 250
            G         +K ++        DP +   L    Y       A   F +  E+ P   
Sbjct: 121 KGNFPLAIQYMEKQIRP----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176

Query: 251 PVW----IAWGWMEWKEGNLDTARELYERALSIDSTTESAA--RCLQAW---GVLEQRVG 301
             +     A    +  +     A+  YE+ + + +   +      ++A            
Sbjct: 177 IGYLWRARANAAQD-PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235

Query: 302 NLSAARRLFRSSLNIN 317
           +   A   +++ L ++
Sbjct: 236 DKVKADAAWKNILALD 251

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 33/284 (11%), Positives = 77/284 (27%), Gaps = 43/284 (15%)

Query: 14  YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDAST 73
                  L K +  AEA  ++ K     +  +PYI+   AV   +L     A++  +   
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEA-KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64

Query: 74  VA---DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRY 130
                 K   A +  +  + +++G    A Q     +        +Y  +         +
Sbjct: 65  SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF 124

Query: 131 EQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI 190
             A     +  +        +    Q     +  + A   F + ++  P     +     
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL---- 180

Query: 191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ 250
                   +  +                           +   LA+  + +  E+     
Sbjct: 181 ---WRARANAAQD------------------------PDTKQGLAKPYYEKLIEVCAPGG 213

Query: 251 PVW-----IAW---GWMEWKEGNLDTARELYERALSIDSTTESA 286
             +      A     +      +   A   ++  L++D T + A
Sbjct: 214 AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 3/177 (1%)

Query: 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASW--IAWSQMEMQQ-ENNLAARQ 169
           N+ +    A    K N Y +A  +F +       S   +   A    E+ + +      +
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY 229
            +   V A+      +  +G      G      +  +     +     +   +    Y  
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121

Query: 230 STANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286
               LA +   +          V+   G   +       A   + + L +       
Sbjct: 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 27/221 (12%), Positives = 61/221 (27%), Gaps = 20/221 (9%)

Query: 76  DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARN 135
           ++     W         Q  +  + +      +    +        L   K         
Sbjct: 27  EEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTIL 86

Query: 136 LFRQATKCNPKSCASW----IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIF 191
               A   +P    +W    I  ++ E +Q     A    +R ++  P N  A     + 
Sbjct: 87  FMEAAILQDPGDAEAWQFLGITQAENENEQA----AIVALQRCLELQPNNLKALMALAVS 142

Query: 192 EANMGFIDKG----KKLLKI----GHAVNPRDPVL--LQSLALLEYKYSTANLARKLFRR 241
             N           K  +K      + V  +       + ++      S     ++L+  
Sbjct: 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202

Query: 242 ASEIDPRHQ--PVWIAWGWMEWKEGNLDTARELYERALSID 280
           A+  +       +    G +    G  + A + +  AL++ 
Sbjct: 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 27/206 (13%), Positives = 63/206 (30%), Gaps = 15/206 (7%)

Query: 127 ANRYEQARNLFRQATKCNPK--------SCASWIAWSQMEMQQENNLAARQLFERAVQAS 178
           A  +E+A+      T+   K        +  +WI+ +Q    Q    A+ + +    +  
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 179 PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKL 238
            K+       G+     G +      ++     +P D    Q L + + +      A   
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121

Query: 239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID-------STTESAARCLQ 291
            +R  E+ P +    +A         +   A E  +  +  +          + +    +
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181

Query: 292 AWGVLEQRVGNLSAARRLFRSSLNIN 317
                      L   + L+  + + N
Sbjct: 182 RMSKSPVDSSVLEGVKELYLEAAHQN 207

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 50/307 (16%), Positives = 91/307 (29%), Gaps = 29/307 (9%)

Query: 4   IDYWPE--------DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYI-WQCW-- 52
            ++W +          R +++  +    Q  V+ +   Y         ENP+  W     
Sbjct: 16  TEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYF-----HTENPFKDWPGAFE 70

Query: 53  -AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG 111
             +   K G++       +A+ + D G   AW    + +    N + A   L + L+   
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 112 GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASW----------IAWSQMEMQQ 161
            N      LA+     +  + A    +   K NPK                  S+  +  
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

Query: 162 ENNLAARQLFERAVQASPKNRFA--WHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL 219
                 ++L+  A   +            G+     G  ++          V P D  L 
Sbjct: 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW 250

Query: 220 QSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI 279
             L         +  A + + RA EI P         G      G    A   +  ALS+
Sbjct: 251 NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310

Query: 280 DSTTESA 286
              + + 
Sbjct: 311 QRKSRNQ 317

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 11/128 (8%), Positives = 27/128 (21%)

Query: 165 LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLAL 224
            +         + S       +     +   G  +    + +    ++  D      L  
Sbjct: 4   GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63

Query: 225 LEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE 284
                   +LA   +   + +D               + G L  A      A  + +   
Sbjct: 64  CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123

Query: 285 SAARCLQA 292
                   
Sbjct: 124 EFXELSTR 131

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 11/120 (9%), Positives = 29/120 (24%)

Query: 60  GNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQT 119
           G +G                +   +  A  + + G  + A  +          +   +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 120 LALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP 179
           L        +Y+ A + +      +          ++  +Q      A      A +   
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 13/145 (8%), Positives = 36/145 (24%)

Query: 94  GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA 153
           G +      +A   +          +LA  + ++  YE A  +F+     +      ++ 
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNP 213
                        A   +                        G + + +  L +   +  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 214 RDPVLLQSLALLEYKYSTANLARKL 238
             P   +    +        L +++
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEM 145

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 1/103 (0%)

Query: 114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFER 173
           E +Y  L   + +A +++ A+ +F+     +      ++              A Q +  
Sbjct: 19  EQLYA-LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY 77

Query: 174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP 216
                                +G +D  +       A+    P
Sbjct: 78  GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 11/106 (10%), Positives = 28/106 (26%)

Query: 76  DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARN 135
            +  +   +     + + G    A+++          +   +  L         YEQA  
Sbjct: 14  SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQ 73

Query: 136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
            +      +          ++  +Q  +   A   F  A   +   
Sbjct: 74  SYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 8   PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARE 67
            +      ALG    +  K  +A+ I+          +   +         LG   +A +
Sbjct: 15  EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-DHYDARYFLGLGACRQSLGLYEQALQ 73

Query: 68  LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN----EYIYQTLALL 123
            +    + D          A   L+ G++  A                      +  A+L
Sbjct: 74  SYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133

Query: 124 EAKANRYEQ 132
           EA   R ++
Sbjct: 134 EAVTARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQ 298
                 +         A G+ +++ G  D A+++++    +D             G   Q
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY---FLGLGACRQ 63

Query: 299 RVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
            +G    A + +     ++          A+     G+   AE 
Sbjct: 64  SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES 107

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 14/110 (12%), Positives = 30/110 (27%)

Query: 171 FERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS 230
                  S       +  G  +   G  D  +K+ +    ++  D      L        
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 231 TANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
               A + +   + +D               + G+LD A   +  A ++ 
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 15/116 (12%), Positives = 31/116 (26%)

Query: 44  ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLL 103
           +           + + G    A+++F A  + D      + G        G  ++A Q  
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY 75

Query: 104 AKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM 159
           + G              A    +    + A + F  A        A     ++   
Sbjct: 76  SYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 40/248 (16%), Positives = 81/248 (32%), Gaps = 43/248 (17%)

Query: 93  QGNIKKARQLLAKGLK------FCGGNEY-----IYQTLALLEAKANRYEQARNLFRQAT 141
              I +A + +AK  K           +Y      Y   A+    A + EQA++ + Q  
Sbjct: 4   AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA 63

Query: 142 KCNPKSCASWIAWSQME------MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM 195
           + +  + + + A    E         +    A Q  E+A               ++  N 
Sbjct: 64  EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV-------------MYVENG 110

Query: 196 GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIA 255
                   L + G  + P D     S A+  Y+ + A +     R     +     +   
Sbjct: 111 TPDTAAMALDRAGKLMEPLDL----SKAVHLYQQA-AAVFENEERLRQAAE-----LIGK 160

Query: 256 WGWMEWKEGNLDTARELYERALSIDSTTE---SAARCLQAWGVLEQRVGNLSAARRLFRS 312
              +  ++   D A    ++  S+    E   +  +   A  +++    +  AA++  R 
Sbjct: 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220

Query: 313 SLNINSQS 320
           S +I   S
Sbjct: 221 SYSIPGFS 228

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.1 bits (112), Expect = 8e-07
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 4/109 (3%)

Query: 42  QGENPYI----WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIK 97
           +  NPY+         +   KL N+ +A   F+A    +     AW    + +       
Sbjct: 9   EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68

Query: 98  KARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK 146
            A   L         +  ++  LA+     +    A    R      P+
Sbjct: 69  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 4/111 (3%)

Query: 108 KFCGGNEYIYQ----TLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163
            F   N Y+Y        L   K     +A   F    +  P+   +W +    + + E 
Sbjct: 7   PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK 66

Query: 164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR 214
           +  A      A    PK+        +   N    +     L+      P+
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 23/122 (18%), Positives = 32/122 (26%), Gaps = 34/122 (27%)

Query: 159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVL 218
           ++  N   A   FE   Q  P+   AW        ++G             A N +D   
Sbjct: 28  LKLANLAEAALAFEAVCQKEPEREEAWR-------SLGLT----------QAENEKDG-- 68

Query: 219 LQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALS 278
                          LA      A  +DP+   V  A       E N + A       L 
Sbjct: 69  ---------------LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113

Query: 279 ID 280
             
Sbjct: 114 SQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 17/102 (16%), Positives = 35/102 (34%)

Query: 79  HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFR 138
           +        +  L+  N+ +A        +     E  +++L L +A+  +   A     
Sbjct: 16  YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75

Query: 139 QATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK 180
            A   +PK  A   A +     + N  AA       + + P+
Sbjct: 76  HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 3/95 (3%)

Query: 248 RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAAR 307
            +    +  G    K  NL  A   +E     +   E A R L   G+ +        A 
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL---GLTQAENEKDGLAI 71

Query: 308 RLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
                +  ++ +        A    ++ N+  A  
Sbjct: 72  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALA 106

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 17/140 (12%), Positives = 43/140 (30%), Gaps = 11/140 (7%)

Query: 160 QQENNLAARQLFERAVQASPKNRFAWH----VWGIFEANMGFIDKGKKLLKIGHA----- 210
             ++   A +L    VQ+SP+  +A      V  +  +     +K    L          
Sbjct: 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270

Query: 211 -VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTA 269
                  ++ Q  A+        + + +      +++      ++  G +   +G    A
Sbjct: 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREA 329

Query: 270 RELYERALSIDSTTESAARC 289
            + Y  A ++     +    
Sbjct: 330 ADAYLTAFNLRPGANTLYWI 349

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 12/152 (7%)

Query: 60  GNIGKARELFDASTVADKGHIAAW----------HGWAVLELRQGNIKKARQLLAKGLKF 109
            ++ +A EL      +      A           H    L+ +Q             L  
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272

Query: 110 CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQ 169
                 IYQ  A+      + +++             S  +++   ++   +  N  A  
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAAD 331

Query: 170 LFERAVQASPKNR-FAWHVWGIFEANMGFIDK 200
            +  A    P      W   GIF+ ++ ++  
Sbjct: 332 AYLTAFNLRPGANTLYWIENGIFQTSVPYVVP 363

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 39/256 (15%), Positives = 83/256 (32%), Gaps = 46/256 (17%)

Query: 29  EARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAV 88
            +  +  +GS                  ++ G+  KA E F  +   +K     +  +A 
Sbjct: 10  HSSGLVPRGSHM----ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFAN 65

Query: 89  LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC 148
           L      +++A     K L+        Y     +      Y++A+++F +A +   ++ 
Sbjct: 66  LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG 125

Query: 149 ASW----IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKL 204
             +        ++E  +     A    +RAV+ +  +  A           G        
Sbjct: 126 DLFYMLGTVLVKLEQPKL----ALPYLQRAVELNENDTEARF-------QFG-------- 166

Query: 205 LKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG 264
                       + L +  +L+        A   F   +E DP H   +   G     + 
Sbjct: 167 ------------MCLANEGMLD-------EALSQFAAVTEQDPGHADAFYNAGVTYAYKE 207

Query: 265 NLDTARELYERALSID 280
           N + A E+ ++A+ I 
Sbjct: 208 NREKALEMLDKAIDIQ 223

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASW----IAWSQMEMQQENNLAARQLF 171
                    ++   YE+A   F +A + N +    +       S +   +     A   +
Sbjct: 25  TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELER----ALAFY 80

Query: 172 ERAVQASPKNRFAWHVWGIFEANMGFI--DKGK---------KLLKIGHAVNPRDPVLLQ 220
           ++A++       A++         G +   K           K L+        +  L  
Sbjct: 81  DKALELDSSAATAYY-------GAGNVYVVKEMYKEAKDMFEKALRA----GMENGDLFY 129

Query: 221 SLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
            L  +  K     LA    +RA E++         +G     EG LD A   +      D
Sbjct: 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189

Query: 281 STTESAARCLQAW---GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGN 336
                A     A+   GV      N   A  +   +++I     +       L     +
Sbjct: 190 P--GHA----DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 198 IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWG 257
            ++ + +L         + +L  +L     ++   + A    R A + DP +   W   G
Sbjct: 5   TERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

Query: 258 WMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAAR 307
                +G+   AR+ +E  L+   +        +   V  +R+    A  
Sbjct: 61  KTLQGQGDRAGARQAWESGLAAAQSRGDQQVV-KELQVFLRRLAREDALE 109

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 3/83 (3%)

Query: 235 ARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWG 294
             +           +  +    G    +    D A      AL  D T   A + L   G
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWL---G 60

Query: 295 VLEQRVGNLSAARRLFRSSLNIN 317
              Q  G+ + AR+ + S L   
Sbjct: 61  KTLQGQGDRAGARQAWESGLAAA 83

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 17/86 (19%), Positives = 32/86 (37%)

Query: 96  IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWS 155
           ++   + L   L     N  +  TL    A+  +++ A    R A   +P    +W    
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

Query: 156 QMEMQQENNLAARQLFERAVQASPKN 181
           +    Q +   ARQ +E  + A+   
Sbjct: 61  KTLQGQGDRAGARQAWESGLAAAQSR 86

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 10/228 (4%)

Query: 58  KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
           K     +A E ++ +    K  I   +  A  E  +G  + A   L   ++        Y
Sbjct: 17  KARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA 177
           + ++   A+           ++  +   KS  +    + +  +  N     +  E     
Sbjct: 76  KVISKSFARIGNAYHKLGDLKKTIEYYQKS-LTEHRTADILTKLRNAEKELKKAEAEAYV 134

Query: 178 SPKNRFAWHVWGIFEANMGFIDKG----KKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN 233
           +P+      + G                 +++K      P D     + A    K  +  
Sbjct: 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFP 190

Query: 234 LARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS 281
            A     +A E DP     +I     +       +A E  + A + D+
Sbjct: 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 22/168 (13%), Positives = 47/168 (27%), Gaps = 10/168 (5%)

Query: 117 YQTLALLEAKANRYEQARNLFRQATKCNPKSCASW----IAWSQMEMQQENNLAARQLFE 172
            +       KA ++++A   + +A + +            A  +    +     A     
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYET----AISTLN 62

Query: 173 RAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA 232
            AV+   + R  + V     A +G        LK       +        A +  K   A
Sbjct: 63  DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKLRNA 121

Query: 233 NLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
               K     + ++P         G   + + +   A + Y   +   
Sbjct: 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 24/193 (12%), Positives = 52/193 (26%), Gaps = 10/193 (5%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN 61
             ++   E    Y  + K  ++            K  +  Q          A +  KL N
Sbjct: 63  DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ--KSLTEHRTADILTKLRN 120

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
             K  +  +A    +                + +   A +   + +K    +   Y   A
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASW----IAWSQMEMQQENNLAARQLFERAVQA 177
              AK   + +A     +A + +P    ++     A   ++        A +  + A   
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS----ALETLDAARTK 236

Query: 178 SPKNRFAWHVWGI 190
             +         I
Sbjct: 237 DAEVNNGSSAREI 249

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 17/69 (24%), Positives = 29/69 (42%)

Query: 212 NPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARE 271
           +P DP    +LA    K+  A+ A  LF    E DP +   +   G +  +    D A +
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 272 LYERALSID 280
            Y + + + 
Sbjct: 63  TYAQGIEVA 71

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 45/270 (16%), Positives = 73/270 (27%), Gaps = 50/270 (18%)

Query: 29  EARAIYAKGSQATQGENPYIWQCW---AVLENKLGNIGKARELFDASTVADKGHIAAWHG 85
              A Y KG Q  +              +   + G++  A  LF+A+   D  H+ AW  
Sbjct: 44  LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY 103

Query: 86  WAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNP 145
               +        A   L + L+    N+     LA+     +   QA  + R   +  P
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

Query: 146 KSCASWIAWSQME---------------MQQENNLAARQLFERAVQASPKNRFAWHVWGI 190
                     +                 +     L  ++LF  AV+  P +     V   
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD-VQ-- 220

Query: 191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ 250
               +G                    VL       +        A   F  A  + P   
Sbjct: 221 --CGLG--------------------VLFNLSGEYD-------KAVDCFTAALSVRPNDY 251

Query: 251 PVWIAWGWMEWKEGNLDTARELYERALSID 280
            +W   G         + A   Y RAL + 
Sbjct: 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ 281

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 41/230 (17%)

Query: 120 LALLEAKANRYEQARNLFRQATKCNPKSCASW----IAWSQMEMQQENNLAARQLFERAV 175
           L +      RY+ A  LF +A K NP+   +         ++ +       A +  +  V
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNP----ALENGKTLV 66

Query: 176 QASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA 235
             +P+    +         +         + +      +     +    LE        A
Sbjct: 67  ARTPRYLGGYM-------VLSEA-----YVALYR----QAEDRERGKGYLE-------QA 103

Query: 236 RKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW-- 293
             + + A  ++PR+ P+ +  G +    G  D A    ++AL+++ T E           
Sbjct: 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPE-------IRSA 156

Query: 294 -GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342
              L   +G L  A   +  +L    +     + +A     +G +  A  
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 43/259 (16%), Positives = 74/259 (28%), Gaps = 25/259 (9%)

Query: 44  ENPYI----WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKA 99
            NPY+         +   KL N+ +A   F+A   A      AW    + +        A
Sbjct: 15  NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLA 74

Query: 100 RQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASW----IAWS 155
              L         +  ++  LA+     +    A    R      P+          A  
Sbjct: 75  IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV 134

Query: 156 QMEMQQENNLA-----------ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKL 204
            ++     +              R L   A++ +P +       G+        D     
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN 194

Query: 205 LKIGHAVNPRDPVLLQSL--ALLEY-KYSTANLARKLFRRASEIDPRHQPVWIAWGWMEW 261
           L+    + P D  L   L   L    +   A  A   + RA +I+P +  V         
Sbjct: 195 LRRAVELRPDDAQLWNKLGATLANGNRPQEALDA---YNRALDINPGYVRVMYNMAVSYS 251

Query: 262 KEGNLDTARELYERALSID 280
                D A +   RA+ + 
Sbjct: 252 NMSQYDLAAKQLVRAIYMQ 270

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 51/219 (23%)

Query: 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASW----IAWSQMEMQQENNLAAR 168
            +  Y+   +  AKA RY QA  L  Q    +           IA+ +            
Sbjct: 7   RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR----GT 62

Query: 169 QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK 228
           +L ER++  +P N             +G                    +    +   +  
Sbjct: 63  ELLERSLADAPDNVKVAT-------VLG--------------------LTYVQVQKYD-- 93

Query: 229 YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAAR 288
                LA  L  + +E +P +  V    G      G  D A + ++ AL +         
Sbjct: 94  -----LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP--NEG-- 144

Query: 289 CLQAW---GVLEQRVGNLSAARRLFRSSLNINSQSYITW 324
             +         +++G    A   F+ +  ++  + +  
Sbjct: 145 --KVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	476
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	100.0
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	100.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	100.0
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	100.0
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	100.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	100.0
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.97
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.97
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.97
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.97
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.97
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.97
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.97
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.97
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.97
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.96
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.95
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.95
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.95
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.95
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.95
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.95
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.95
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.95
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.95
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.95
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.94
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.94
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.94
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.94
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.94
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.94
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.94
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.93
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.93
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.93
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.93
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.92
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.92
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.92
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.91
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.9
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.9
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.9
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.89
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.89
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.89
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.89
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.88
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.88
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.88
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.88
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.88
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.87
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.87
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.86
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.86
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.86
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.86
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.85
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.85
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.85
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.84
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.84
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.84
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.84
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.83
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.83
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.82
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.81
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.81
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.8
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.8
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.78
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.78
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.78
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.77
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.76
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.76
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.76
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.76
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.74
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.74
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.73
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.73
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.72
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.71
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.71
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.71
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.7
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.67
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.66
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.65
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.64
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.63
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.63
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.63
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.61
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.61
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.61
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.6
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.58
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.57
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.57
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.57
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.56
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.56
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.55
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.55
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.54
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.54
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.54
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.53
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.53
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.52
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.52
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.52
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.51
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.5
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.49
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.49
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.48
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.47
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.47
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.46
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.46
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.45
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.42
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.42
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.41
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.41
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.4
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.37
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.35
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.2
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.2
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.2
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.18
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.16
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.07
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.04
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.03
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.02
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.01
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.01
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.99
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.98
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.97
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.93
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.88
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.85
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.73
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.72
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.66
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.62
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.59
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.56
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.55
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.5
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.49
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.48
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.35
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.25
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.19
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.88
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.87
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.77
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.6
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.59
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.57
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.43
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.26
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.24
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.22
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.18
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.88
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.88
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.72
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.71
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.63
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.53
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.52
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.5
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.24
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.17
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.05
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.0
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.91
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.9
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.87
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.83
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.6
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.36
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.29
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.59
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.57
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.53
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.45
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.17
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.95
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.82
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.18
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.93
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	88.89
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.72
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.16
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.65
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	80.92

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.3e-45  Score=347.77  Aligned_cols=369  Identities=14%  Similarity=0.124  Sum_probs=355.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC
Q 011845           15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG   94 (476)
Q Consensus        15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~   94 (476)
                      +.+|..++..|++++|+..|.+++... |+++.++..++.++...|++++|...+++++..+|.++.+|..+|.++...|
T Consensus         3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g   81 (388)
T 1w3b_A            3 MELAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence            457899999999999999999999988 8999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845           95 NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA  174 (476)
Q Consensus        95 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  174 (476)
                      ++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++
T Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 011845          175 VQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWI  254 (476)
Q Consensus       175 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  254 (476)
                      +...|++..++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|+++.++.
T Consensus       162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (388)
T 1w3b_A          162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG  241 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 011845          255 AWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQ  334 (476)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  334 (476)
                      .+|.++...|++++|+..|+++++..|+++.   .+..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999865   4778899999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhhhh---hcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845          335 GNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK  387 (476)
Q Consensus       335 g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  387 (476)
                      |++++|...++++++..|.   .+..++.++...|++++|+..|+++++++|++..
T Consensus       319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~  374 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence            9999999999999987664   4578899999999999999999999999998654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.5e-44  Score=340.58  Aligned_cols=361  Identities=17%  Similarity=0.191  Sum_probs=344.1

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      ++++.+|+++.++..+|.++...|++++|+..+++++... |.++.++..+|.++...|++++|+..|++++..+|++..
T Consensus        24 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  102 (388)
T 1w3b_A           24 QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID  102 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH
Confidence            3567899999999999999999999999999999999988 899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      ++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++...|++..++..+|.++...
T Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  182 (388)
T 1w3b_A          103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ  182 (388)
T ss_dssp             HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR  241 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  241 (476)
                      |++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|++
T Consensus       183 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  262 (388)
T 1w3b_A          183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR  262 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH
Q 011845          242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY  321 (476)
Q Consensus       242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  321 (476)
                      +++..|+++.++..+|.++...|++++|+..|+++++..|++..   .+..+|.++...|++++|+..|+++++.+|++.
T Consensus       263 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  339 (388)
T 1w3b_A          263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---SLNNLANIKREQGNIEEAVRLYRKALEVFPEFA  339 (388)
T ss_dssp             HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            99999999999999999999999999999999999999999854   477889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhh---cchhhhhhhhcc
Q 011845          322 ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV---VDDASWVMGFMD  366 (476)
Q Consensus       322 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~g  366 (476)
                      .++..++.++...|++++|...++++++..|..   +..+|.++..+|
T Consensus       340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            999999999999999999999999999876643   344555554443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.2e-40  Score=327.46  Aligned_cols=377  Identities=12%  Similarity=0.096  Sum_probs=310.4

Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccC---------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845            8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQAT---------------QGENPYIWQCWAVLENKLGNIGKARELFDAS   72 (476)
Q Consensus         8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~   72 (476)
                      |.++.++..++.+|...|++++|+.+|++.....               .+.++.+|..+|.++.+.|++++|+..|+++
T Consensus       147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  226 (597)
T 2xpi_A          147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA  226 (597)
T ss_dssp             GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5566667777777777777777777776532110               0113566777777777777777777777777


Q ss_pred             hhcCcCcHHHHHHHHH--------------------------------------HHHHhCCHHHHHHHHHHhhccCCCcH
Q 011845           73 TVADKGHIAAWHGWAV--------------------------------------LELRQGNIKKARQLLAKGLKFCGGNE  114 (476)
Q Consensus        73 ~~~~p~~~~~~~~la~--------------------------------------~~~~~~~~~~A~~~~~~~~~~~p~~~  114 (476)
                      +..+|.+..++..++.                                      .|.+.|++++|+.+|+++++. |.+.
T Consensus       227 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~  305 (597)
T 2xpi_A          227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSS  305 (597)
T ss_dssp             HHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCH
T ss_pred             HHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchH
Confidence            7777776666555533                                      233556677777777777666 5677


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845          115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN  194 (476)
Q Consensus       115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  194 (476)
                      .++..++.++...|++++|+.+|+++++..|.+..++..++.++...|++++|+..+++++...|++..++..++.+|..
T Consensus       306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  385 (597)
T 2xpi_A          306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC  385 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence            78888889999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 011845          195 MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYE  274 (476)
Q Consensus       195 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  274 (476)
                      .|++++|+.+|+++++..|.+..++..++.++...|++++|+..|+++++..|++..++..+|.++...|++++|+.+|+
T Consensus       386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  465 (597)
T 2xpi_A          386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ  465 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCc-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 011845          275 RALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI------NSQS-YITWMTWAQLEEDQGNSVRAEEIRNLY  347 (476)
Q Consensus       275 ~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  347 (476)
                      ++++..|.++.   .+..+|.++...|++++|+++|+++++.      +|++ ..+|..++.++...|++++|...++++
T Consensus       466 ~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          466 SSYALFQYDPL---LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG  542 (597)
T ss_dssp             HHHHHCCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCCCChH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999888754   4777899999999999999999999887      5665 688999999999999999999999998


Q ss_pred             Hhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCCC
Q 011845          348 FQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKE  388 (476)
Q Consensus       348 ~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  388 (476)
                      ++..|   ..+..++.++...|++++|+..|+++++++|+++..
T Consensus       543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  586 (597)
T 2xpi_A          543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA  586 (597)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence            88655   456778889999999999999999999999987543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=2.3e-39  Score=311.39  Aligned_cols=362  Identities=12%  Similarity=0.010  Sum_probs=319.9

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      +++..+|.++..++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..
T Consensus        17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   95 (450)
T 2y4t_A           17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA   95 (450)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            4677899999999999999999999999999999999887 889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH---HHHHHH------------HHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE---YIYQTL------------ALLEAKANRYEQARNLFRQATKCNPK  146 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~  146 (476)
                      ++..+|.++...|++++|+..|+++++..|.+.   .++..+            |.++...|++++|+..|++++...|.
T Consensus        96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  175 (450)
T 2y4t_A           96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW  175 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999988   776655            66699999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH----
Q 011845          147 SCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSL----  222 (476)
Q Consensus       147 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l----  222 (476)
                      ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|++...+..+    
T Consensus       176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~  255 (450)
T 2y4t_A          176 DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK  255 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998887666    


Q ss_pred             --------HHHHHHcCCHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHH
Q 011845          223 --------ALLEYKYSTANLARKLFRRASEIDPRHQP----VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL  290 (476)
Q Consensus       223 --------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  290 (476)
                              |.++...|++++|+.+|+++++..|+++.    .+..+|.++...|++++|+..+++++...|++..   ++
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~  332 (450)
T 2y4t_A          256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN---AL  332 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---HH
Confidence                    99999999999999999999999999854    7888999999999999999999999999998854   57


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcc----
Q 011845          291 QAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMD----  366 (476)
Q Consensus       291 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g----  366 (476)
                      ..+|.++...|++++|+.+|+++++++|++..++..++.+....++..                   ....+..+|    
T Consensus       333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-------------------~~~~y~~lg~~~~  393 (450)
T 2y4t_A          333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ-------------------KRDYYKILGVKRN  393 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH-------------------SCCSGGGSCSSTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc-------------------chhHHHHhCCCcc
Confidence            788999999999999999999999999999999998887765543211                   112233333    


Q ss_pred             -cchHHHHHHHH-HhccccCCC
Q 011845          367 -IIDPALDRIKQ-LLNLEKSSY  386 (476)
Q Consensus       367 -~~~~A~~~~~~-al~~~p~~~  386 (476)
                       ..+++.+.|++ +++..|++.
T Consensus       394 ~~~~~~~~~y~~~~l~~~pd~~  415 (450)
T 2y4t_A          394 AKKQEIIKAYRKLALQWHPDNF  415 (450)
T ss_dssp             CCTTHHHHHHHHHHHHSCGGGC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCC
Confidence             56777888886 788888754

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-40  Score=323.42  Aligned_cols=374  Identities=13%  Similarity=0.099  Sum_probs=347.7

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL   89 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~   89 (476)
                      .+..++.+|..++..|++++|+..|++++... | ++.++..+|.++...|++++|+..|++++..+|.+..++..+|.+
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~   82 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence            46789999999999999999999999999988 5 699999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCc--------------------------------------------------------
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGN--------------------------------------------------------  113 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~--------------------------------------------------------  113 (476)
                      +...|++++|+..|++++...|.+                                                        
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            999999999999999998877632                                                        


Q ss_pred             -----------------------HHHHHHHHHHHHH---hccHHHHHHHHHHHHh-----c--C-------CCchhHHHH
Q 011845          114 -----------------------EYIYQTLALLEAK---ANRYEQARNLFRQATK-----C--N-------PKSCASWIA  153 (476)
Q Consensus       114 -----------------------~~~~~~la~~~~~---~g~~~~A~~~~~~~~~-----~--~-------p~~~~~~~~  153 (476)
                                             ..++..+|.++..   .|++++|+..|++++.     .  .       |.+..++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence                                   6667777887776   8999999999999999     5  3       445678999


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN  233 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  233 (476)
                      +|.++...|++++|+..+++++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  321 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD  321 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845          234 LARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSS  313 (476)
Q Consensus       234 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  313 (476)
                      +|+..|+++++..|.++.++..+|.++...|++++|+..|+++++..|++..   .+..+|.++...|++++|+.+|+++
T Consensus       322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE---VPNFFAEILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH---HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998865   4778899999999999999999999


Q ss_pred             HhhCCCcHH------HHHHHHHHHHH---cCChHHHHHHHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhcc
Q 011845          314 LNINSQSYI------TWMTWAQLEED---QGNSVRAEEIRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNL  381 (476)
Q Consensus       314 l~~~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~  381 (476)
                      +...|++..      ++..++.++..   .|++++|...+++++...|   ..+..++.++...|++++|+..|++++++
T Consensus       399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            999988855      99999999999   9999999999999998665   34567899999999999999999999999


Q ss_pred             ccCCCCCC
Q 011845          382 EKSSYKEP  389 (476)
Q Consensus       382 ~p~~~~~~  389 (476)
                      +|+++...
T Consensus       479 ~~~~~~~~  486 (514)
T 2gw1_A          479 ARTMEEKL  486 (514)
T ss_dssp             CSSHHHHH
T ss_pred             ccccHHHH
Confidence            99876543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.5e-40  Score=326.29  Aligned_cols=376  Identities=14%  Similarity=0.097  Sum_probs=317.5

Q ss_pred             ccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--------
Q 011845            5 DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVAD--------   76 (476)
Q Consensus         5 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------   76 (476)
                      ...|++ ..++.+|.++...|++++|+..|++++..  +.++.++..++.+|.+.|++++|+..|++.....        
T Consensus       112 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  188 (597)
T 2xpi_A          112 DITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANK  188 (597)
T ss_dssp             HHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------
T ss_pred             hhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccc
Confidence            345533 56667777777777777777777776543  4567777777777777777777777777533222        


Q ss_pred             --------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH--------------------------
Q 011845           77 --------KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL--------------------------  122 (476)
Q Consensus        77 --------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~--------------------------  122 (476)
                              +.+..+|..+|.+|.+.|++++|+..|+++++.+|.+..++..++.                          
T Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  268 (597)
T 2xpi_A          189 LLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA  268 (597)
T ss_dssp             --CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGH
T ss_pred             ccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchH
Confidence                    2246677777777777777777777777777777777766655533                          


Q ss_pred             ------------HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845          123 ------------LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI  190 (476)
Q Consensus       123 ------------~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  190 (476)
                                  .|...|++++|+..|+++++. |.+..++..++.++...|++++|+..|++++...|.+..++..++.
T Consensus       269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  347 (597)
T 2xpi_A          269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLA  347 (597)
T ss_dssp             HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence                        333567777777777777766 6677888999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHH
Q 011845          191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAR  270 (476)
Q Consensus       191 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  270 (476)
                      ++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+|+++++..|.+..+|..++.++...|++++|+
T Consensus       348 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  427 (597)
T 2xpi_A          348 SLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI  427 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845          271 ELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ  350 (476)
Q Consensus       271 ~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  350 (476)
                      ..|++++...|++...   +..+|.++...|++++|+++|+++++..|.++.++..++.++.+.|++++|..+++++++.
T Consensus       428 ~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          428 SAYTTAARLFQGTHLP---YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL  504 (597)
T ss_dssp             HHHHHHHHTTTTCSHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9999999999988554   6778999999999999999999999999999999999999999999999999999999886


Q ss_pred             h----------hhhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845          351 R----------TEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK  387 (476)
Q Consensus       351 ~----------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  387 (476)
                      .          ...+..++.++...|++++|+..|+++++++|+++.
T Consensus       505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  551 (597)
T 2xpi_A          505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN  551 (597)
T ss_dssp             HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred             hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            3          235577899999999999999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=5.4e-39  Score=315.93  Aligned_cols=373  Identities=13%  Similarity=0.110  Sum_probs=328.2

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL   89 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~   89 (476)
                      .+..++.+|..++..|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  102 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            46789999999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCcHHH-----------------------------------------------------
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGNEYI-----------------------------------------------------  116 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------------------------------------------------  116 (476)
                      +...|++++|+..|+ ++...|+....                                                     
T Consensus       103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          103 NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             HHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence            999999999999995 77666653321                                                     


Q ss_pred             ---------------HHHH--------HHHHHHhccHHHHHHHHHHHHhcCCCchh-------HHHHHHHHHHHhccHHH
Q 011845          117 ---------------YQTL--------ALLEAKANRYEQARNLFRQATKCNPKSCA-------SWIAWSQMEMQQENNLA  166 (476)
Q Consensus       117 ---------------~~~l--------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~la~~~~~~~~~~~  166 (476)
                                     ...+        +......|++++|+..|+++++..|+++.       ++..+|.++...|++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~  261 (537)
T 3fp2_A          182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD  261 (537)
T ss_dssp             TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence                           1112        22223346899999999999999999865       57778888999999999


Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 011845          167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID  246 (476)
Q Consensus       167 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  246 (476)
                      |+..|++++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..
T Consensus       262 A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  340 (537)
T 3fp2_A          262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN  340 (537)
T ss_dssp             HHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            99999999999999 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH----
Q 011845          247 PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYI----  322 (476)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----  322 (476)
                      |+++.++..+|.++...|++++|+..|+++++..|++...   +..+|.++...|++++|+.+|++++...|++..    
T Consensus       341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  417 (537)
T 3fp2_A          341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV---PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG  417 (537)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence            9999999999999999999999999999999999998654   677799999999999999999999998876553    


Q ss_pred             --HHHHHHHHHHHc----------CChHHHHHHHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845          323 --TWMTWAQLEEDQ----------GNSVRAEEIRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK  387 (476)
Q Consensus       323 --~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  387 (476)
                        .+..++.++...          |++++|...+++++...|   ..+..+|.++...|++++|+..|++++++.|+++.
T Consensus       418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  497 (537)
T 3fp2_A          418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE  497 (537)
T ss_dssp             THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred             HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence              356778899998          999999999999998766   45678999999999999999999999999998654


Q ss_pred             C
Q 011845          388 E  388 (476)
Q Consensus       388 ~  388 (476)
                      .
T Consensus       498 ~  498 (537)
T 3fp2_A          498 K  498 (537)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=8.8e-38  Score=290.73  Aligned_cols=322  Identities=12%  Similarity=0.017  Sum_probs=291.4

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL   89 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~   89 (476)
                      +++.++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            56789999999999999999999999999988 88999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHhhccCC---CcHHHHHHH------------HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845           90 ELRQGNIKKARQLLAKGLKFCG---GNEYIYQTL------------ALLEAKANRYEQARNLFRQATKCNPKSCASWIAW  154 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  154 (476)
                      +...|++++|+..|+++++..|   .+..++..+            |.++...|++++|+..++++++..|.++.++..+
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  160 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR  160 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            9999999999999999999999   888888777            6888999999999999999999999999999999


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH------------HH
Q 011845          155 SQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQ------------SL  222 (476)
Q Consensus       155 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~l  222 (476)
                      |.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++..++.            .+
T Consensus       161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (359)
T 3ieg_A          161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES  240 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999887654            34


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH
Q 011845          223 ALLEYKYSTANLARKLFRRASEIDPRHQP----VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQ  298 (476)
Q Consensus       223 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~  298 (476)
                      |.++...|++++|+..++++++..|+++.    ++..+|.++...|++++|+..|+++++..|++..   ++..+|.++.
T Consensus       241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~  317 (359)
T 3ieg_A          241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN---ALKDRAEAYL  317 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHH
Confidence            77889999999999999999999988774    4567889999999999999999999999888844   5777899999


Q ss_pred             HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 011845          299 RVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQG  335 (476)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  335 (476)
                      ..|++++|..+|+++++.+|++..++..++.+....+
T Consensus       318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999988888888776544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-38  Score=305.28  Aligned_cols=350  Identities=14%  Similarity=0.121  Sum_probs=325.6

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC---
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG---   78 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---   78 (476)
                      ++++.+| ++.++..+|.++...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++..+|.   
T Consensus        31 ~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           31 WALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            3566778 68999999999999999999999999999998 899999999999999999999999999999887752   


Q ss_pred             ----------------------------------------------------------------------------cHHH
Q 011845           79 ----------------------------------------------------------------------------HIAA   82 (476)
Q Consensus        79 ----------------------------------------------------------------------------~~~~   82 (476)
                                                                                                  +..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (514)
T 2gw1_A          109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADK  188 (514)
T ss_dssp             GTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHH
Confidence                                                                                        2667


Q ss_pred             HHHHHHHHHH---hCCHHHHHHHHHHhhc-----c--C-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 011845           83 WHGWAVLELR---QGNIKKARQLLAKGLK-----F--C-------GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNP  145 (476)
Q Consensus        83 ~~~la~~~~~---~~~~~~A~~~~~~~~~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  145 (476)
                      +..+|.++..   .|++++|+..|++++.     .  .       |.+..++..+|.++...|++++|+..|++++...|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~  268 (514)
T 2gw1_A          189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP  268 (514)
T ss_dssp             HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence            7778888776   8999999999999998     5  3       45567899999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011845          146 KSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALL  225 (476)
Q Consensus       146 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  225 (476)
                      . ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.+
T Consensus       269 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  347 (514)
T 2gw1_A          269 R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL  347 (514)
T ss_dssp             C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHH
T ss_pred             c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHH
Confidence            9 999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH---HHHHHHHHHHHHH---
Q 011845          226 EYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA---ARCLQAWGVLEQR---  299 (476)
Q Consensus       226 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~l~~~~~~---  299 (476)
                      +...|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++...|+++..   ...+..+|.++..   
T Consensus       348 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  427 (514)
T 2gw1_A          348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT  427 (514)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred             HHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999999999999999999999999999998877541   1247788999999   


Q ss_pred             hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhh
Q 011845          300 VGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV  354 (476)
Q Consensus       300 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  354 (476)
                      .|++++|+..|++++..+|++..++..++.++...|++++|...+++++...|..
T Consensus       428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999999999999876643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1.9e-36  Score=291.00  Aligned_cols=326  Identities=13%  Similarity=0.050  Sum_probs=295.1

Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 011845           27 VAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKG  106 (476)
Q Consensus        27 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  106 (476)
                      ...+...+.+++... |.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++
T Consensus         8 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A            8 SSGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            445667777777777 8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch---hHHHHH------------HHHHHHhccHHHHHHHH
Q 011845          107 LKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC---ASWIAW------------SQMEMQQENNLAARQLF  171 (476)
Q Consensus       107 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l------------a~~~~~~~~~~~A~~~~  171 (476)
                      ++.+|.+..++..+|.+|...|++++|+..|++++...|++.   .++..+            |.++...|++++|+..|
T Consensus        87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  166 (450)
T 2y4t_A           87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL  166 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999999988   776655            66699999999999999


Q ss_pred             HHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 011845          172 ERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP  251 (476)
Q Consensus       172 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  251 (476)
                      ++++...|.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|++..
T Consensus       167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  246 (450)
T 2y4t_A          167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR  246 (450)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH------------HHHHHHcCChhHHHHHHHHHHccCCCChhH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 011845          252 VWIAW------------GWMEWKEGNLDTARELYERALSIDSTTESA-ARCLQAWGVLEQRVGNLSAARRLFRSSLNINS  318 (476)
Q Consensus       252 ~~~~l------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  318 (476)
                      .+..+            |.++...|++++|+.+|++++...|+++.. ...+..+|.++...|++++|+.++++++..+|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            88766            999999999999999999999999987653 34678889999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh
Q 011845          319 QSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE  353 (476)
Q Consensus       319 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  353 (476)
                      ++..++..++.++...|++++|...++++++..|.
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  361 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN  361 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            99999999999999999999999999999886664

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=7.1e-36  Score=277.83  Aligned_cols=309  Identities=14%  Similarity=0.066  Sum_probs=290.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845           45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE  124 (476)
Q Consensus        45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  124 (476)
                      ++..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccHHHHHHHHHHHHhcCC---CchhHHHHH------------HHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 011845          125 AKANRYEQARNLFRQATKCNP---KSCASWIAW------------SQMEMQQENNLAARQLFERAVQASPKNRFAWHVWG  189 (476)
Q Consensus       125 ~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  189 (476)
                      ...|++++|+..|+++++..|   ++..++..+            |.++...|++++|+..+++++...|.++.++..+|
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            999999999999999999999   888888777            78999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH------------HHH
Q 011845          190 IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWI------------AWG  257 (476)
Q Consensus       190 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~l~  257 (476)
                      .++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|++..++.            .+|
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a  241 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  241 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988665            348


Q ss_pred             HHHHHcCChhHHHHHHHHHHccCCCChhH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 011845          258 WMEWKEGNLDTARELYERALSIDSTTESA-ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGN  336 (476)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  336 (476)
                      .++...|++++|+..+++++...|+++.. ...+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+
T Consensus       242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  321 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM  321 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence            88999999999999999999999997654 23466789999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhh
Q 011845          337 SVRAEEIRNLYFQQRTE  353 (476)
Q Consensus       337 ~~~A~~~~~~~~~~~~~  353 (476)
                      +++|...++++++..|+
T Consensus       322 ~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          322 YDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999887664

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=4.6e-37  Score=302.13  Aligned_cols=351  Identities=15%  Similarity=0.111  Sum_probs=310.6

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      ++++.+|+++.+++.+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+..|+ ++..+|+...
T Consensus        50 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~  127 (537)
T 3fp2_A           50 YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG  127 (537)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------
T ss_pred             HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh
Confidence            4678899999999999999999999999999999999998 8999999999999999999999999996 6666665432


Q ss_pred             HH--------------------------------------------------------------------HHH-------
Q 011845           82 AW--------------------------------------------------------------------HGW-------   86 (476)
Q Consensus        82 ~~--------------------------------------------------------------------~~l-------   86 (476)
                      .+                                                                    ..+       
T Consensus       128 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  207 (537)
T 3fp2_A          128 ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT  207 (537)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhh
Confidence            21                                                                    111       


Q ss_pred             -HHHHHHhCCHHHHHHHHHHhhccCCCcHH-------HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 011845           87 -AVLELRQGNIKKARQLLAKGLKFCGGNEY-------IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQME  158 (476)
Q Consensus        87 -a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  158 (476)
                       +......|++++|+..|+++++..|.++.       ++..+|.++...|++++|+..|++++...|+ ..++..+|.++
T Consensus       208 ~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~  286 (537)
T 3fp2_A          208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTL  286 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHH
Confidence             22222345899999999999999999865       5778888999999999999999999999999 89999999999


Q ss_pred             HHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011845          159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKL  238 (476)
Q Consensus       159 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  238 (476)
                      ...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..
T Consensus       287 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  366 (537)
T 3fp2_A          287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF  366 (537)
T ss_dssp             CCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH---HHHHHHHHHHHHHh----------CCHHH
Q 011845          239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA---ARCLQAWGVLEQRV----------GNLSA  305 (476)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~l~~~~~~~----------g~~~~  305 (476)
                      |+++++..|+++.++..+|.++...|++++|+..|+++++..|++...   ...+..+|.++...          |++++
T Consensus       367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  446 (537)
T 3fp2_A          367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA  446 (537)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence            999999999999999999999999999999999999999987655432   22356678899999          99999


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845          306 ARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV  355 (476)
Q Consensus       306 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  355 (476)
                      |+.+|+++++.+|++..++..++.++...|++++|...++++++..|...
T Consensus       447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  496 (537)
T 3fp2_A          447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD  496 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            99999999999999999999999999999999999999999999777543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=292.18  Aligned_cols=371  Identities=13%  Similarity=0.062  Sum_probs=298.6

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccC--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC----
Q 011845            9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQAT--------QGENPYIWQCWAVLENKLGNIGKARELFDASTVAD----   76 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----   76 (476)
                      ..+..+..+|.++...|++++|++.|+++++..        .+....+|.++|.+|..+|++++|+..+++++.+.    
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            346678899999999999999999999998641        25567789999999999999999999999998653    


Q ss_pred             ----cCcHHHHHHHHHHHHHh--CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhcCCCc
Q 011845           77 ----KGHIAAWHGWAVLELRQ--GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA---NRYEQARNLFRQATKCNPKS  147 (476)
Q Consensus        77 ----p~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~  147 (476)
                          +..+.++..+|.++...  +++++|+.+|+++++++|+++.++..++.++...   ++.++|++.|+++++++|++
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~  208 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN  208 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence                34567888888777665  4799999999999999999999999999886654   66788999999999999999


Q ss_pred             hhHHHHHHHHHHH----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011845          148 CASWIAWSQMEMQ----QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA  223 (476)
Q Consensus       148 ~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  223 (476)
                      +.++..+|..+..    .|++++|+.++++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  288 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG  288 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            9999888876654    467889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc-------------------CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845          224 LLEYKY-------------------STANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE  284 (476)
Q Consensus       224 ~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  284 (476)
                      .+|...                   +.+++|+..++++++.+|.+..++..+|.++...|++++|+.+|+++++..|++.
T Consensus       289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~  368 (472)
T 4g1t_A          289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV  368 (472)
T ss_dssp             HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence            887643                   3467899999999999999999999999999999999999999999999998877


Q ss_pred             hHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh---hhcchhhh
Q 011845          285 SAARCLQAWGVL-EQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT---EVVDDASW  360 (476)
Q Consensus       285 ~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~  360 (476)
                      ....++..+|.+ +...|++++|+..|++++++.|++......+          ..+..++++.+...|   ..+..+|.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~----------~~l~~~~~~~l~~~p~~~~~~~~LG~  438 (472)
T 4g1t_A          369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLSKNGADSEALHVLAF  438 (472)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH----------HHHHHHHHHHHHHCC-CTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            666666777765 4578999999999999999999987643332          234455666666554   45678999


Q ss_pred             hhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845          361 VMGFMDIIDPALDRIKQLLNLEKSSYKEP  389 (476)
Q Consensus       361 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~  389 (476)
                      ++...|++++|+++|++++++.|.+|.+.
T Consensus       439 ~~~~~g~~~~A~~~y~kALe~~~~~p~a~  467 (472)
T 4g1t_A          439 LQELNEKMQQADEDSERGLESGSLIPSAS  467 (472)
T ss_dssp             HHHHHHHCC--------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence            99999999999999999999999988754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.2e-35  Score=268.83  Aligned_cols=293  Identities=15%  Similarity=0.130  Sum_probs=237.0

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845           43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL  122 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~  122 (476)
                      +.++.++..+|..++..|++++|+.+|++++..+|.+..++..++.++...|++++|+..++++++.+|.++.++..+|.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   98 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC   98 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            56667777778777778888888888888887778777777777777788888888888888888888888888888888


Q ss_pred             HHHHhc-cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH
Q 011845          123 LEAKAN-RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKG  201 (476)
Q Consensus       123 ~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  201 (476)
                      ++...| ++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.+...+..+|.++...|++++|
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA  178 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence            888888 7888888888888888888888888888888888888888888888888887777777888888888888888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---------CCCHHHHHHHHHHHHHcCChhHHHHH
Q 011845          202 KKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID---------PRHQPVWIAWGWMEWKEGNLDTAREL  272 (476)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~  272 (476)
                      +..+++++...|.++.++..+|.++...|++++|+..++++++..         |..+.++..+|.++...|++++|+.+
T Consensus       179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  258 (330)
T 3hym_B          179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY  258 (330)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            888888888888888888888888888888888888888887765         56667888888888888999999999


Q ss_pred             HHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-HHcCChH
Q 011845          273 YERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLE-EDQGNSV  338 (476)
Q Consensus       273 ~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~  338 (476)
                      |+++++..|++..   ++..+|.++...|++++|..+|+++++.+|+++.++..++.++ ...|+.+
T Consensus       259 ~~~a~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          259 HRQALVLIPQNAS---TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHSTTCSH---HHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHhhCccchH---HHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            9988888888754   4677788889999999999999999988898888888888887 4555543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=9.7e-35  Score=267.01  Aligned_cols=298  Identities=15%  Similarity=0.099  Sum_probs=277.9

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA   82 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~   82 (476)
                      .+...|+++.+++.+|..++..|++++|+..|++++... |.+...+..++.++...|++++|+..+++++..+|.++.+
T Consensus        14 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   92 (330)
T 3hym_B           14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS   92 (330)
T ss_dssp             ------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred             HHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence            456678899999999999999999999999999999988 8889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845           83 WHGWAVLELRQG-NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        83 ~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      +..+|.++...| ++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++..|++..++..+|.++...
T Consensus        93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            999999999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCH
Q 011845          162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN---------PRDPVLLQSLALLEYKYSTA  232 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~  232 (476)
                      |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...         |..+.++..+|.++...|++
T Consensus       173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            999999999999999999999999999999999999999999999999876         66778999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHH-HHhCCHH
Q 011845          233 NLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLE-QRVGNLS  304 (476)
Q Consensus       233 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~-~~~g~~~  304 (476)
                      ++|+.+|+++++..|+++.++..+|.++...|++++|+.+|+++++..|++...   +..++.++ ...|+.+
T Consensus       253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS---VTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH---HHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH---HHHHHHHHHHHhCchh
Confidence            999999999999999999999999999999999999999999999999999654   66678877 4555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=3e-34  Score=268.08  Aligned_cols=291  Identities=15%  Similarity=0.139  Sum_probs=226.6

Q ss_pred             HHHHcCCHHHHHH-HHHHHhhcCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845           55 LENKLGNIGKARE-LFDASTVADKGHI----AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR  129 (476)
Q Consensus        55 ~~~~~g~~~~A~~-~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  129 (476)
                      ++...|++++|+. .|++++...|.++    ..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            3445577777777 7777777666553    4567777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHH----------------HHHHHHH
Q 011845          130 YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWH----------------VWGIFEA  193 (476)
Q Consensus       130 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------------~l~~~~~  193 (476)
                      +++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+...+.                .++.++ 
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  192 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-  192 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence            777777777777777777777777777777777777777777777777776655443                455555 


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHH
Q 011845          194 NMGFIDKGKKLLKIGHAVNPR--DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARE  271 (476)
Q Consensus       194 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (476)
                      ..|++++|+..+++++...|.  ++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            888889999999999888888  788888899999999999999999999998888888889999999999999999999


Q ss_pred             HHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc-----------HHHHHHHHHHHHHcCChHHH
Q 011845          272 LYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS-----------YITWMTWAQLEEDQGNSVRA  340 (476)
Q Consensus       272 ~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~g~~~~A  340 (476)
                      .|+++++..|++..   .+..+|.++...|++++|+.+|++++...|++           ..+|..++.++...|++++|
T Consensus       273 ~~~~al~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          273 AYRRALELQPGYIR---SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHhCCCcHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            99999988888744   46778999999999999999999999888877           78899999999999999999


Q ss_pred             HHHHHHHHh
Q 011845          341 EEIRNLYFQ  349 (476)
Q Consensus       341 ~~~~~~~~~  349 (476)
                      ..++.+.+.
T Consensus       350 ~~~~~~~l~  358 (368)
T 1fch_A          350 GAADARDLS  358 (368)
T ss_dssp             HHHHTTCHH
T ss_pred             HHhHHHHHH
Confidence            887665544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=1.3e-33  Score=263.85  Aligned_cols=296  Identities=19%  Similarity=0.152  Sum_probs=264.0

Q ss_pred             HHHHhcCCHHHHHH-HHHHhhccCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845           19 KVLSKQSKVAEARA-IYAKGSQATQGEN----PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ   93 (476)
Q Consensus        19 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   93 (476)
                      .++...|+|++|+. .|++++... |.+    ...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...
T Consensus        33 ~~~~~~~~~~~a~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  111 (368)
T 1fch_A           33 EAHPWLSDYDDLTSATYDKGYQFE-EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN  111 (368)
T ss_dssp             -------------CHHHHCCCCCC-SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHhhhhhHHHhcC-CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            36677899999999 999998876 444    467899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHH----------------HHHHH
Q 011845           94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI----------------AWSQM  157 (476)
Q Consensus        94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----------------~la~~  157 (476)
                      |++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+...+.                .++.+
T Consensus       112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998877664                45666


Q ss_pred             HHHhccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 011845          158 EMQQENNLAARQLFERAVQASPK--NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA  235 (476)
Q Consensus       158 ~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  235 (476)
                      + ..|++++|+..|++++...|.  ++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|
T Consensus       192 ~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          192 L-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             h-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence            6 999999999999999999999  8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh--------HHHHHHHHHHHHHHhCCHHHHH
Q 011845          236 RKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES--------AARCLQAWGVLEQRVGNLSAAR  307 (476)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~  307 (476)
                      +..|+++++..|+++.++..+|.++...|++++|+..|++++.+.|++..        ...++..+|.++...|++++|.
T Consensus       271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            99999999999999999999999999999999999999999999887621        1346788899999999999999


Q ss_pred             HHHHHHHhh
Q 011845          308 RLFRSSLNI  316 (476)
Q Consensus       308 ~~~~~al~~  316 (476)
                      .++++++..
T Consensus       351 ~~~~~~l~~  359 (368)
T 1fch_A          351 AADARDLST  359 (368)
T ss_dssp             HHHTTCHHH
T ss_pred             HhHHHHHHH
Confidence            999887754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=100.00  E-value=2.3e-31  Score=260.65  Aligned_cols=377  Identities=12%  Similarity=0.141  Sum_probs=307.7

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      ++++.+|.+..+|..++.. ...|++++|..+|++++... |.+..+|..++..+...|++++|+.+|++++...| +..
T Consensus         4 ~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~   80 (530)
T 2ooe_A            4 KKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HID   80 (530)
T ss_dssp             HHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHH
T ss_pred             hHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChH
Confidence            4678899999999999984 78999999999999999998 99999999999999999999999999999999999 677


Q ss_pred             HHHHHHHHH-HHhCCHHHHHH----HHHHhhcc---CCCcHHHHHHHHHHHHH---------hccHHHHHHHHHHHHhcC
Q 011845           82 AWHGWAVLE-LRQGNIKKARQ----LLAKGLKF---CGGNEYIYQTLALLEAK---------ANRYEQARNLFRQATKCN  144 (476)
Q Consensus        82 ~~~~la~~~-~~~~~~~~A~~----~~~~~~~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~~~~~  144 (476)
                      .|..++... ...|++++|.+    +|++++..   +|.+..+|..++.....         .|+++.|+.+|++++. .
T Consensus        81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~  159 (530)
T 2ooe_A           81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N  159 (530)
T ss_dssp             HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred             HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence            888888644 45677776655    77777653   56677888888887765         7889999999999988 4


Q ss_pred             CCch--hHHHHHHHH---------------------------------------------------------------HH
Q 011845          145 PKSC--ASWIAWSQM---------------------------------------------------------------EM  159 (476)
Q Consensus       145 p~~~--~~~~~la~~---------------------------------------------------------------~~  159 (476)
                      |...  ..|......                                                               ..
T Consensus       160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~  239 (530)
T 2ooe_A          160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW  239 (530)
T ss_dssp             CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence            6432  222211110                                                               00


Q ss_pred             Hh------cc----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCC
Q 011845          160 QQ------EN----NLAARQLFERAVQASPKNRFAWHVWGIFEAN-------MGFID-------KGKKLLKIGHA-VNPR  214 (476)
Q Consensus       160 ~~------~~----~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~  214 (476)
                      ..      ++    ...++..|++++...|.++.+|..++.++..       .|+++       +|+.+|++++. ..|+
T Consensus       240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~  319 (530)
T 2ooe_A          240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK  319 (530)
T ss_dssp             HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred             HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence            00      11    1356778999999999999999999999886       78877       89999999997 7899


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHH
Q 011845          215 DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ-PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW  293 (476)
Q Consensus       215 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l  293 (476)
                      +..+|..++.++...|++++|+.+|+++++..|.++ .+|..++.++.+.|++++|+..|+++++..|.....   +...
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~---~~~~  396 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV---YVTA  396 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH---HHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH---HHHH
Confidence            999999999999999999999999999999999885 689999999999999999999999999988776433   3333


Q ss_pred             HHH-HHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh---h----hcchhhhhhhhc
Q 011845          294 GVL-EQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT---E----VVDDASWVMGFM  365 (476)
Q Consensus       294 ~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~~~~~~~  365 (476)
                      +.+ +...|++++|..+|+++++.+|+++.+|..++.++...|+.++|..++++++...+   +    ++..........
T Consensus       397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~  476 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  476 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence            443 34689999999999999999999999999999999999999999999999987532   2    344445556677


Q ss_pred             ccchHHHHHHHHHhccccCC
Q 011845          366 DIIDPALDRIKQLLNLEKSS  385 (476)
Q Consensus       366 g~~~~A~~~~~~al~~~p~~  385 (476)
                      |+.+.+..+++++++..|++
T Consensus       477 G~~~~~~~~~~r~~~~~p~~  496 (530)
T 2ooe_A          477 GDLASILKVEKRRFTAFREE  496 (530)
T ss_dssp             SCHHHHHHHHHHHHHHTHHH
T ss_pred             CCHHHHHHHHHHHHHHCchh
Confidence            99999999999999998853

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=100.00  E-value=6.2e-30  Score=247.97  Aligned_cols=356  Identities=10%  Similarity=0.036  Sum_probs=322.6

Q ss_pred             CCCCchhHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCcC
Q 011845            7 WPEDGRPYVALGKVLSK----QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENK----LGNIGKARELFDASTVADKG   78 (476)
Q Consensus         7 ~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~   78 (476)
                      .++++.+++.+|.+|..    .+++++|+.+|+++.+.   .++.+++.+|.+|..    .+++++|+.+|+++...  .
T Consensus        35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~  109 (490)
T 2xm6_A           35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G  109 (490)
T ss_dssp             HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence            46788999999999998    89999999999999875   478999999999999    99999999999999874  5


Q ss_pred             cHHHHHHHHHHHHH----hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCchhH
Q 011845           79 HIAAWHGWAVLELR----QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKCNPKSCAS  150 (476)
Q Consensus        79 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~  150 (476)
                      ++.+++.+|.+|..    .+++++|+.+|+++...  .++.++..+|.+|..    .+++++|+.+|+++++.  .++.+
T Consensus       110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a  185 (490)
T 2xm6_A          110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWS  185 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence            78999999999999    89999999999999875  578999999999998    88999999999999986  57899


Q ss_pred             HHHHHHHHHH----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 011845          151 WIAWSQMEMQ----QENNLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSL  222 (476)
Q Consensus       151 ~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l  222 (476)
                      +..+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.++..    .+++++|+.+|+++.+.  .++.+++.+
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l  261 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRL  261 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            9999999998    89999999999999875  467899999999997    89999999999999876  568899999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHccCCCChhHHHHHHHH
Q 011845          223 ALLEYK----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKE-----GNLDTARELYERALSIDSTTESAARCLQAW  293 (476)
Q Consensus       223 a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l  293 (476)
                      |.++..    .+++++|+.+|+++.+.  .++.+++.+|.++...     +++++|+.+|+++.+..+.     ..+..+
T Consensus       262 g~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~-----~a~~~l  334 (490)
T 2xm6_A          262 GYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA-----TAQANL  334 (490)
T ss_dssp             HHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH-----HHHHHH
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH-----HHHHHH
Confidence            999999    89999999999999876  5789999999999998     9999999999999987432     357888


Q ss_pred             HHHHHHhC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhh-hhhhcchhhhhhhh-
Q 011845          294 GVLEQRVG---NLSAARRLFRSSLNINSQSYITWMTWAQLEED----QGNSVRAEEIRNLYFQQ-RTEVVDDASWVMGF-  364 (476)
Q Consensus       294 ~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~-  364 (476)
                      |.++...|   ++++|+.+|+++++.  .++.+++.++.++..    .+++++|...++++.+. .+.....+|.++.. 
T Consensus       335 g~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g  412 (490)
T 2xm6_A          335 GAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYG  412 (490)
T ss_dssp             HHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence            99999877   899999999999987  678999999999999    89999999999999885 45666789999988 


Q ss_pred             ---cccchHHHHHHHHHhccccC
Q 011845          365 ---MDIIDPALDRIKQLLNLEKS  384 (476)
Q Consensus       365 ---~g~~~~A~~~~~~al~~~p~  384 (476)
                         .+++++|+.+|+++++..|+
T Consensus       413 ~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          413 LGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCC
Confidence               89999999999999999854

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.7e-32  Score=262.04  Aligned_cols=337  Identities=14%  Similarity=0.090  Sum_probs=275.9

Q ss_pred             cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccC-------CCCChHHHHHHHHHHHHc--CCHHHHHHHHHHHhhcC
Q 011845            6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQAT-------QGENPYIWQCWAVLENKL--GNIGKARELFDASTVAD   76 (476)
Q Consensus         6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~   76 (476)
                      .+|.....+..+|.+|...|++++|+.+|++++...       .+..+.++..+|.++...  +++++|+.+|++++..+
T Consensus        89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~  168 (472)
T 4g1t_A           89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK  168 (472)
T ss_dssp             CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence            367777889999999999999999999999998642       134577888888777665  47999999999999999


Q ss_pred             cCcHHHHHHHHHHHHH---hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCchh
Q 011845           77 KGHIAAWHGWAVLELR---QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKCNPKSCA  149 (476)
Q Consensus        77 p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~  149 (476)
                      |+++.++..++.++..   .++.++|+..++++++++|.+..++..+|..+..    .|++++|+.++++++..+|..+.
T Consensus       169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~  248 (472)
T 4g1t_A          169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD  248 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH
T ss_pred             CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH
Confidence            9999999999888654   5777899999999999999999999888876655    46788999999999999999999


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHh
Q 011845          150 SWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM-------------------GFIDKGKKLLKIGHA  210 (476)
Q Consensus       150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~~~~  210 (476)
                      ++..+|.++...|++++|+..++++++..|+++.++..+|.+|...                   +.+++|+..+++++.
T Consensus       249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  328 (472)
T 4g1t_A          249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE  328 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999987543                   346789999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH---HHHHHHHH-HHHcCChhHHHHHHHHHHccCCCChhH
Q 011845          211 VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP---VWIAWGWM-EWKEGNLDTARELYERALSIDSTTESA  286 (476)
Q Consensus       211 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~  286 (476)
                      .+|.+..++..+|.++...|++++|+.+|+++++..|++..   ++..+|.+ +...|++++|+..|++++++.|+....
T Consensus       329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~  408 (472)
T 4g1t_A          329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK  408 (472)
T ss_dssp             HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred             cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence            99999999999999999999999999999999999887543   45666654 457899999999999999999998543


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845          287 ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV  355 (476)
Q Consensus       287 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  355 (476)
                      ..             ....+..++++++..+|+++.++..+|.++...|++++|++.|+++++..+...
T Consensus       409 ~~-------------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p  464 (472)
T 4g1t_A          409 EK-------------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP  464 (472)
T ss_dssp             HH-------------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred             HH-------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence            22             224456778899999999999999999999999999999999999998665443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=100.00  E-value=7e-33  Score=258.57  Aligned_cols=269  Identities=16%  Similarity=0.090  Sum_probs=193.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845           45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE  124 (476)
Q Consensus        45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  124 (476)
                      +...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.+|
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY  143 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34457778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHhccHHHHHHHHHHHHhcCCCchhHHHHH----------HHHHHHhccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHH
Q 011845          125 AKANRYEQARNLFRQATKCNPKSCASWIAW----------SQMEMQQENNLAARQLFERAVQASPK--NRFAWHVWGIFE  192 (476)
Q Consensus       125 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~  192 (476)
                      ...|++++|+..|+++++..|++...+..+          |.++...|++++|+..|++++...|.  ++.++..+|.++
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  223 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF  223 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence            888888888888888888777665555444          77777777777777777777777777  677777777777


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 011845          193 ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAREL  272 (476)
Q Consensus       193 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  272 (476)
                      ...|++++|+..|++++...|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+
T Consensus       224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  303 (365)
T 4eqf_A          224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN  303 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHccCCCChh---------HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845          273 YERALSIDSTTES---------AARCLQAWGVLEQRVGNLSAARRLFRSS  313 (476)
Q Consensus       273 ~~~a~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a  313 (476)
                      |++++++.|+...         ...++..++.++...|+.+.+..+.++.
T Consensus       304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  353 (365)
T 4eqf_A          304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD  353 (365)
T ss_dssp             HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            7777777665322         1234555566666666666555555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=100.00  E-value=1.7e-32  Score=255.86  Aligned_cols=268  Identities=13%  Similarity=0.058  Sum_probs=246.0

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL   89 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~   89 (476)
                      +...++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34559999999999999999999999999998 88999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCcHHHHHH----------HHHHHHHhccHHHHHHHHHHHHhcCCC--chhHHHHHHHH
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQT----------LALLEAKANRYEQARNLFRQATKCNPK--SCASWIAWSQM  157 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~  157 (476)
                      +...|++++|+..|+++++..|.+..++..          +|.++...|++++|+.+|++++...|.  ++.++..+|.+
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            999999999999999999999876655554          499999999999999999999999999  89999999999


Q ss_pred             HHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011845          158 EMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARK  237 (476)
Q Consensus       158 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  237 (476)
                      +...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.
T Consensus       223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845          238 LFRRASEIDPR------------HQPVWIAWGWMEWKEGNLDTARELYERALS  278 (476)
Q Consensus       238 ~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  278 (476)
                      .|++++++.|+            +..+|..++.++...|+.+.|.....+.+.
T Consensus       303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence            99999999876            367899999999999999999887776443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=100.00  E-value=5.7e-32  Score=250.37  Aligned_cols=259  Identities=16%  Similarity=0.108  Sum_probs=202.1

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCcCcH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN-IGKARELFDASTVADKGHI   80 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~   80 (476)
                      .++..+|++..++..+|.++...|++++|+..|++++... |.+..+|+.+|.++...|+ +++|+..|++++..+|++.
T Consensus        88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~  166 (382)
T 2h6f_A           88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY  166 (382)
T ss_dssp             SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence            3567777778888888888888888888888888888777 7788888888888888885 8888888888888888888


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ  160 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  160 (476)
                      .+|+.+|.++...|++++|+..|++++.++|++..+|..+|.++...|++++|+..|+++++++|++..+|..+|.++..
T Consensus       167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             -hccHHHH-----HHHHHHHHHcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--
Q 011845          161 -QENNLAA-----RQLFERAVQASPKNRFAWHVWGIFEANMG--FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS--  230 (476)
Q Consensus       161 -~~~~~~A-----~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--  230 (476)
                       .|..++|     +..|++++.++|++..+|+.++.++...|  ++++|+..+.++ +.+|+++.++..+|.++...|  
T Consensus       247 l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~  325 (382)
T 2h6f_A          247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLEN  325 (382)
T ss_dssp             TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHT
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcc
Confidence             4554666     47777888888888778888887777776  577777777776 777777777777777777763  


Q ss_pred             -------CHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHH
Q 011845          231 -------TANLARKLFRRA-SEIDPRHQPVWIAWGWMEWK  262 (476)
Q Consensus       231 -------~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~  262 (476)
                             .+++|+.+|+++ ++.+|.....|..++..+..
T Consensus       326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence                   247777777777 77777777777777766654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=100.00  E-value=1.2e-31  Score=245.96  Aligned_cols=285  Identities=15%  Similarity=0.098  Sum_probs=163.4

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL   91 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   91 (476)
                      ..++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT  100 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            344555555555555555555555555554 4555555555555555555555555555555555555555555555555


Q ss_pred             HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHH-HH-HHHHhccHHHHHH
Q 011845           92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAW-SQ-MEMQQENNLAARQ  169 (476)
Q Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-a~-~~~~~~~~~~A~~  169 (476)
                      ..|++++|+..+++++...|.+...+..+....                    |... ....+ +. ++...|++++|+.
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~-~~~~~~~~~~~~~~~~~~~A~~  159 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQAD--------------------VDID-DLNVQSEDFFFAAPNEYRECRT  159 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC-----------------------------------------CCTTSHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH--------------------HHHH-HHHHHHHhHHHHHcccHHHHHH
Confidence            555555555555555555554444333330000                    0000 00011 33 4556666666666


Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 011845          170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH  249 (476)
Q Consensus       170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  249 (476)
                      .+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  239 (327)
T 3cv0_A          160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY  239 (327)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 011845          250 QPVWIAWGWMEWKEGNLDTARELYERALSIDSTT---------ESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS  318 (476)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  318 (476)
                      +.++..+|.++...|++++|+..|++++...|+.         ......+..+|.++...|++++|..++++++...|
T Consensus       240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~  317 (327)
T 3cv0_A          240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA  317 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence            6666666666666666666666666666666651         11233456667777777777777777666665544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=100.00  E-value=2.6e-31  Score=243.74  Aligned_cols=286  Identities=17%  Similarity=0.098  Sum_probs=227.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845           45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE  124 (476)
Q Consensus        45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  124 (476)
                      +...++.+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            34456667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHH-HH-HHHHcCCHHHHH
Q 011845          125 AKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVW-GI-FEANMGFIDKGK  202 (476)
Q Consensus       125 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-~~-~~~~~~~~~~A~  202 (476)
                      ...|++++|+..+++++...|.+...+..+....                    |... ....+ +. ++...|++++|+
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~-~~~~~~~~~~~~~~~~~~~A~  158 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD--------------------VDID-DLNVQSEDFFFAAPNEYRECR  158 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC-----------------------------------------CCTTSHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH--------------------HHHH-HHHHHHHhHHHHHcccHHHHH
Confidence            7777777777777777777666655444331111                    1111 11133 44 578889999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845          203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                      ..+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  238 (327)
T 3cv0_A          159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG  238 (327)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845          283 TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ------------SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ  350 (476)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  350 (476)
                      +..   .+..+|.++...|++++|+.+|++++...|+            +..++..++.++...|++++|..++++++..
T Consensus       239 ~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  315 (327)
T 3cv0_A          239 YVR---VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP  315 (327)
T ss_dssp             CHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred             CHH---HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            854   4778899999999999999999999999999            8999999999999999999999998877776


Q ss_pred             hhhh
Q 011845          351 RTEV  354 (476)
Q Consensus       351 ~~~~  354 (476)
                      .+..
T Consensus       316 ~~~~  319 (327)
T 3cv0_A          316 FAKE  319 (327)
T ss_dssp             HHHH
T ss_pred             cchh
Confidence            5543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=100.00  E-value=3e-31  Score=245.53  Aligned_cols=259  Identities=9%  Similarity=0.069  Sum_probs=235.0

Q ss_pred             HhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCCCchhH
Q 011845           72 STVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR-YEQARNLFRQATKCNPKSCAS  150 (476)
Q Consensus        72 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~  150 (476)
                      ++..+|++..+|..+|.++...|++++|+..|++++.++|.+..+|..+|.++...|+ +++|+..|++++.++|++..+
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence            3567788889999999999999999999999999999999999999999999999996 999999999999999999999


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-c
Q 011845          151 WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK-Y  229 (476)
Q Consensus       151 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~  229 (476)
                      |..+|.++...|++++|+..|++++.++|++..+|+.+|.++...|++++|+..|+++++++|.+..+|+.+|.++.. .
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~  248 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT  248 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             CCHHHH-----HHHHHHHhccCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhC-
Q 011845          230 STANLA-----RKLFRRASEIDPRHQPVWIAWGWMEWKEG--NLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG-  301 (476)
Q Consensus       230 ~~~~~A-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g-  301 (476)
                      |..++|     +.+|++++.++|++..+|+.++.++...|  ++++|++.++++ +.+|++..   ++..+|.++...| 
T Consensus       249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~---al~~La~~~~~~~~  324 (382)
T 2h6f_A          249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY---LIAFLVDIYEDMLE  324 (382)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH---HHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH---HHHHHHHHHHHHhc
Confidence            554777     58999999999999999999999999988  699999999988 88888744   4677799999875 


Q ss_pred             --------CHHHHHHHHHHH-HhhCCCcHHHHHHHHHHHHHc
Q 011845          302 --------NLSAARRLFRSS-LNINSQSYITWMTWAQLEEDQ  334 (476)
Q Consensus       302 --------~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~  334 (476)
                              .+++|+++|+++ ++++|.....|..++..+...
T Consensus       325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence                    358999999999 999999999999998877654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.97  E-value=4.5e-27  Score=227.87  Aligned_cols=352  Identities=13%  Similarity=0.047  Sum_probs=305.7

Q ss_pred             CCchhHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCcCcH
Q 011845            9 EDGRPYVALGKVLSK----QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENK----LGNIGKARELFDASTVADKGHI   80 (476)
Q Consensus         9 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~   80 (476)
                      +++.+++.+|.+|..    .+++++|+.+|+++.+.   .++.+++.+|.+|..    .+++++|+.+|+++...  .++
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~  147 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRD  147 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence            678899999999999    99999999999999875   478999999999999    89999999999999875  578


Q ss_pred             HHHHHHHHHHHH----hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCchhHHH
Q 011845           81 AAWHGWAVLELR----QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKCNPKSCASWI  152 (476)
Q Consensus        81 ~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~  152 (476)
                      .+++.+|.+|..    .+++++|+.+|+++.+.  .++.++..+|.+|..    .+++++|+.+|+++.+.  .++.++.
T Consensus       148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~  223 (490)
T 2xm6_A          148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQL  223 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHH
Confidence            999999999998    88999999999999876  579999999999998    89999999999999886  4678999


Q ss_pred             HHHHHHHH----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011845          153 AWSQMEMQ----QENNLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLAL  224 (476)
Q Consensus       153 ~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  224 (476)
                      .+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+|+++.+.  .++.+++.+|.
T Consensus       224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~  299 (490)
T 2xm6_A          224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAH  299 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence            99999997    89999999999999875  567889999999998    89999999999999875  57899999999


Q ss_pred             HHHHc-----CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q 011845          225 LEYKY-----STANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG---NLDTARELYERALSIDSTTESAARCLQAWGVL  296 (476)
Q Consensus       225 ~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~  296 (476)
                      ++...     +++++|+.+|+++.+.  .++.+++.+|.++...|   ++++|+.+|+++++.  .+   ...+..+|.+
T Consensus       300 ~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~  372 (490)
T 2xm6_A          300 LYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE---KAAQFNLGNA  372 (490)
T ss_dssp             HHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC---HHHHHHHHHH
T ss_pred             HHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC---HHHHHHHHHH
Confidence            99998     9999999999999986  46789999999999877   899999999999987  33   3357888999


Q ss_pred             HHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhhh------hhcchhhhhh
Q 011845          297 EQR----VGNLSAARRLFRSSLNINSQSYITWMTWAQLEED----QGNSVRAEEIRNLYFQQRT------EVVDDASWVM  362 (476)
Q Consensus       297 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~  362 (476)
                      |..    .+++++|+.+|+++++.  .++.++..++.++..    .+++++|...|+++....+      .....++.++
T Consensus       373 y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~  450 (490)
T 2xm6_A          373 LLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT  450 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence            999    89999999999999886  468899999999999    8999999999999998762      2223344443


Q ss_pred             hhcccchHHHHHHHHHhccccC
Q 011845          363 GFMDIIDPALDRIKQLLNLEKS  384 (476)
Q Consensus       363 ~~~g~~~~A~~~~~~al~~~p~  384 (476)
                      .  .+.+.|.+..++.++..|+
T Consensus       451 ~--~~~~~a~~~a~~~~~~~~~  470 (490)
T 2xm6_A          451 A--KQLQQAELLSQQYIEKYAP  470 (490)
T ss_dssp             H--HHHHHHHHHHHHHHHHHCH
T ss_pred             H--hHHHHHHHHHHHHHHHHHH
Confidence            3  2345555555555554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.97  E-value=3e-28  Score=238.53  Aligned_cols=346  Identities=14%  Similarity=0.196  Sum_probs=292.1

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHH-HHHcCCHHHHHH----HHHHHhh--
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVL-ENKLGNIGKARE----LFDASTV--   74 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~----~~~~~~~--   74 (476)
                      ++++.+|.++.+|..++..+...|++++|..+|++++... | +..+|..++.. ....|++++|.+    .|++++.  
T Consensus        37 ~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~  114 (530)
T 2ooe_A           37 RLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-L-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI  114 (530)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-C-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC
Confidence            4678899999999999999999999999999999999998 6 67889888854 445688777765    7777764  


Q ss_pred             -cCcCcHHHHHHHHHHHHH---------hCCHHHHHHHHHHhhccCCCcH--HHHHHHHHH-------------------
Q 011845           75 -ADKGHIAAWHGWAVLELR---------QGNIKKARQLLAKGLKFCGGNE--YIYQTLALL-------------------  123 (476)
Q Consensus        75 -~~p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~-------------------  123 (476)
                       .+|.+..+|..++.....         .|+++.|..+|+++++ .|...  ..|......                   
T Consensus       115 g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~  193 (530)
T 2ooe_A          115 GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRD  193 (530)
T ss_dssp             TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHH
Confidence             356678888888887765         7899999999999998 46432  222211110                   


Q ss_pred             --------------------------------------------HHHh------cc----HHHHHHHHHHHHhcCCCchh
Q 011845          124 --------------------------------------------EAKA------NR----YEQARNLFRQATKCNPKSCA  149 (476)
Q Consensus       124 --------------------------------------------~~~~------g~----~~~A~~~~~~~~~~~p~~~~  149 (476)
                                                                  ....      ++    ...++..|++++...|.++.
T Consensus       194 ~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~  273 (530)
T 2ooe_A          194 YMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPD  273 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHH
Confidence                                                        0000      11    13667889999999999999


Q ss_pred             HHHHHHHHHHH-------hccHH-------HHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 011845          150 SWIAWSQMEMQ-------QENNL-------AARQLFERAVQ-ASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR  214 (476)
Q Consensus       150 ~~~~la~~~~~-------~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  214 (476)
                      +|+.+|.++..       .|+++       +|+.+|+++++ ..|++..+|..++.++...|++++|..+|++++...|.
T Consensus       274 ~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  353 (530)
T 2ooe_A          274 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI  353 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence            99999999986       79987       99999999997 79999999999999999999999999999999999999


Q ss_pred             CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH-HHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845          215 DP-VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWM-EWKEGNLDTARELYERALSIDSTTESAARCLQA  292 (476)
Q Consensus       215 ~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  292 (476)
                      ++ .+|..++.++...|++++|+.+|+++++..|.....+...+.+ +...|++++|..+|+++++..|+++.   ++..
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~---~~~~  430 (530)
T 2ooe_A          354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE---YVLA  430 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHH---HHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHH---HHHH
Confidence            86 6999999999999999999999999999999888887777766 34689999999999999999999855   4677


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh
Q 011845          293 WGVLEQRVGNLSAARRLFRSSLNINSQSY----ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE  353 (476)
Q Consensus       293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  353 (476)
                      ++.++...|+.++|..+|++++...|.++    .+|..++.+....|+.+.+..++.++.+..|+
T Consensus       431 ~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          431 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            79999999999999999999999876654    48989999999999999999999999887774

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.97  E-value=7.5e-29  Score=222.32  Aligned_cols=276  Identities=9%  Similarity=-0.045  Sum_probs=224.6

Q ss_pred             HHHHhcCCHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHH
Q 011845           19 KVLSKQSKVAEARAIYAKGSQATQGEN-PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIK   97 (476)
Q Consensus        19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~   97 (476)
                      ...+..|+|.+|+..++++.... |.+ .+....++.+|...|+++.|+..++.   .+|....++..++..+...|+.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~-p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSS-PERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCC-chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence            45667899999999988876655 443 45667788899999999999887765   25556777888888888889999


Q ss_pred             HHHHHHHHhhcc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845           98 KARQLLAKGLKF--CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAV  175 (476)
Q Consensus        98 ~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  175 (476)
                      +|++.+++++..  +|+++.+++.+|.++...|++++|+..+++     |.++.++..+|.++...|++++|+..|++++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999988765  588889999999999999999999998887     7888899999999999999999999999999


Q ss_pred             HcCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 011845          176 QASPKNRFAWHVWG--IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW  253 (476)
Q Consensus       176 ~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  253 (476)
                      +.+|++.......+  .++...|++++|+.+|++++...|+++.+++.+|.++...|++++|+..|++++..+|+++.++
T Consensus       158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l  237 (291)
T 3mkr_A          158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL  237 (291)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            98888764443333  3444558899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCChhH-HHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845          254 IAWGWMEWKEGNLDT-ARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLF  310 (476)
Q Consensus       254 ~~l~~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  310 (476)
                      .++|.++...|++.+ +..+++++++++|+++.+       ..+..+.+.|+++..-|
T Consensus       238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~-------~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI-------KEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH-------HHHHHHHHHHHHHHHHc
Confidence            999999988998876 567888899999988655       34455666666666554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.97  E-value=3.2e-29  Score=223.57  Aligned_cols=255  Identities=13%  Similarity=0.094  Sum_probs=205.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch----hHHHHHH
Q 011845           80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC----ASWIAWS  155 (476)
Q Consensus        80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~la  155 (476)
                      ++.++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++. .|.++    .++..+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            345667777777777777788877777777777777777788888888888888888888877 33333    3478888


Q ss_pred             HHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 011845          156 QMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA  235 (476)
Q Consensus       156 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  235 (476)
                      .++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|......+++++|
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888999999999999999999999988898899999999555555699999


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHccC---CCC--hhHHHHHHHHHHHHHHhCCHHHHH
Q 011845          236 RKLFRRASEIDPRHQPVWIAWGWMEWKEGN---LDTARELYERALSID---STT--ESAARCLQAWGVLEQRVGNLSAAR  307 (476)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~---~~~--~~~~~~~~~l~~~~~~~g~~~~A~  307 (476)
                      +..|+++++..|++..++..+|.++...|+   +++|+..|+++++..   |+.  .....++..+|.++...|++++|+
T Consensus       162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999998   888999999998875   332  223467888999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 011845          308 RLFRSSLNINSQSYITWMTWAQLEEDQG  335 (476)
Q Consensus       308 ~~~~~al~~~p~~~~~~~~l~~~~~~~g  335 (476)
                      .+|+++++++|+++.++-.++.+....+
T Consensus       242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          242 AAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            9999999999999999888877765544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.97  E-value=8.5e-28  Score=215.47  Aligned_cols=275  Identities=11%  Similarity=-0.000  Sum_probs=238.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGH-IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE  131 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  131 (476)
                      ....+..|+|..|+..++++...+|++ .+....++.+|...|+++.|+..++..   +|....++..++..+...|+.+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHH
Confidence            345678999999999999988888877 467788999999999999999887652   5667778899999999999999


Q ss_pred             HHHHHHHHHHhc--CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845          132 QARNLFRQATKC--NPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGH  209 (476)
Q Consensus       132 ~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  209 (476)
                      +|++.+++++..  +|+++.+++.+|.++...|++++|+..+++     |.++.++..++.++...|++++|+..+++++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999876  599999999999999999999999999988     8899999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHH
Q 011845          210 AVNPRDPVLLQSLA--LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA  287 (476)
Q Consensus       210 ~~~~~~~~~~~~la--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  287 (476)
                      ..+|++.......+  .++...|++++|+.+|+++++..|+++.+++.+|.++...|++++|...|++++..+|+++.. 
T Consensus       158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~-  236 (291)
T 3mkr_A          158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET-  236 (291)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred             hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-
Confidence            99998875544433  444456899999999999999999999999999999999999999999999999999999654 


Q ss_pred             HHHHHHHHHHHHhCCHHH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 011845          288 RCLQAWGVLEQRVGNLSA-ARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE  342 (476)
Q Consensus       288 ~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  342 (476)
                        +.++|.++...|+.++ +..+++++++++|+++.+.    .+..+.+.++++..
T Consensus       237 --l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          237 --LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL  286 (291)
T ss_dssp             --HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence              7888999999999976 5789999999999999764    34445555555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.97  E-value=1e-28  Score=220.40  Aligned_cols=251  Identities=12%  Similarity=0.052  Sum_probs=178.6

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc----HHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH----IAAWHG   85 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~   85 (476)
                      +++.++.+|.+++..|++++|+..|+++++.. |.++.++..+|.++...|++++|+..+++++. .|.+    ..++..
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~   79 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEY   79 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHH
Confidence            34567777888888888888888888887776 67777777888888888888888888888777 3333    344777


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHH
Q 011845           86 WAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL  165 (476)
Q Consensus        86 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~  165 (476)
                      +|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|......++++
T Consensus        80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            77777777888888888887777777777777777777777777777777777777777777777777773344445777


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHHcCCHHH
Q 011845          166 AARQLFERAVQASPKNRFAWHVWGIFEANMGF---IDKGKKLLKIGHAVN---PRD-----PVLLQSLALLEYKYSTANL  234 (476)
Q Consensus       166 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---~~~-----~~~~~~la~~~~~~~~~~~  234 (476)
                      +|+..|+++++..|++..++..+|.++...|+   +++|+..++++++..   |+.     ..++..+|.++...|++++
T Consensus       160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (272)
T 3u4t_A          160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK  239 (272)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence            77777777777777777777777777777777   777777777777654   331     2456666777777777777


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 011845          235 ARKLFRRASEIDPRHQPVWIAWGWMEWK  262 (476)
Q Consensus       235 A~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (476)
                      |+.+|+++++.+|+++.++..++.+...
T Consensus       240 A~~~~~~al~~~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          240 ADAAWKNILALDPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred             HHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence            7777777777777776666666555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-28  Score=215.85  Aligned_cols=226  Identities=13%  Similarity=0.040  Sum_probs=113.6

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc-------HHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-------IAAW   83 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~   83 (476)
                      +..+..+|.++...|++++|+..|+++++..  .++.++..+|.++...|++++|+..+++++..+|.+       +.++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4455555555555555555555555555544  445555555555555555555555555555554443       3455


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                      ..+|.++...|++++|+..+++++...|.        +.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            55555555555555555555555554443        2334444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845          164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS  243 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  243 (476)
                      +++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|++++
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             ccC
Q 011845          244 EID  246 (476)
Q Consensus       244 ~~~  246 (476)
                      +..
T Consensus       235 ~~~  237 (258)
T 3uq3_A          235 TKD  237 (258)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.97  E-value=2e-28  Score=210.14  Aligned_cols=210  Identities=17%  Similarity=0.066  Sum_probs=103.1

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845           43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL  122 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~  122 (476)
                      |.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 011845          123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK  202 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  202 (476)
                      ++...+..             .+.          .....|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus        82 ~~~~~~~~-------------~~~----------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           82 AYVALYRQ-------------AED----------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             HHHHHHHT-------------CSS----------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhhhh-------------hhh----------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence            55555000             000          0000155555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845          203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERA  276 (476)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (476)
                      ..|+++++.+ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++
T Consensus       139 ~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          139 ASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5555555555 555555555555555555555555555555555555555555555555555555555555443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.97  E-value=2.5e-28  Score=209.51  Aligned_cols=199  Identities=13%  Similarity=0.077  Sum_probs=149.4

Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845            8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA   87 (476)
Q Consensus         8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la   87 (476)
                      |.++.+++.+|.++...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++..+|+++.++..+|
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            8899999999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-----------CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845           88 VLELRQ-----------GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ  156 (476)
Q Consensus        88 ~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  156 (476)
                      .++...           |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+ +++.++..+|.
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~  159 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence            999998           666666666666666666666666666666666666666666666666666 66666666666


Q ss_pred             HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845          157 MEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIG  208 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  208 (476)
                      ++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.1e-28  Score=213.33  Aligned_cols=227  Identities=13%  Similarity=-0.001  Sum_probs=140.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-------HHHH
Q 011845           45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN-------EYIY  117 (476)
Q Consensus        45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~  117 (476)
                      .+..+..+|.++...|++++|+..|++++..+ .++.++..+|.++...|++++|+..++++++..|.+       +.++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            34566666677777777777777777766666 666666666766666777777777766666665544       4566


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 011845          118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGF  197 (476)
Q Consensus       118 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  197 (476)
                      ..+|.++...|++++|+..|++++...|.        +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            66666666666666666666666666554        3445555566666666666666666655666666666666666


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011845          198 IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL  277 (476)
Q Consensus       198 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  277 (476)
                      +++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            66666666666665555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccC
Q 011845          278 SID  280 (476)
Q Consensus       278 ~~~  280 (476)
                      ++.
T Consensus       235 ~~~  237 (258)
T 3uq3_A          235 TKD  237 (258)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.96  E-value=3.1e-28  Score=230.26  Aligned_cols=292  Identities=12%  Similarity=0.040  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHhhcc------CCCcHHHH
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI----AAWHGWAVLELRQGNIKKARQLLAKGLKF------CGGNEYIY  117 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~  117 (476)
                      .+...|.++...|++++|+..|++++...|.++    .++..+|.++...|++++|+..+++++..      .|....++
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   90 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   90 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            334444444444444444444444444444332    23344444444444444444444444333      11223344


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHhcc--------------------HHHHHHHH
Q 011845          118 QTLALLEAKANRYEQARNLFRQATKCNPKS------CASWIAWSQMEMQQEN--------------------NLAARQLF  171 (476)
Q Consensus       118 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~  171 (476)
                      ..+|.++...|++++|+.++++++...|..      ..++..+|.++...|+                    +++|+..+
T Consensus        91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  170 (406)
T 3sf4_A           91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY  170 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            444455555555555555555444443322      2245555555555555                    55555555


Q ss_pred             HHHHHc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 011845          172 ERAVQA------SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYKYSTANLARKLF  239 (476)
Q Consensus       172 ~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~  239 (476)
                      ++++..      .+....++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+.++
T Consensus       171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  250 (406)
T 3sf4_A          171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  250 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            555543      12223455666666666666666666666666554332      226677777777777777777777


Q ss_pred             HHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC---ChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845          240 RRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSIDST---TESAARCLQAWGVLEQRVGNLSAARRLF  310 (476)
Q Consensus       240 ~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~  310 (476)
                      ++++...+..      ..++..+|.++...|++++|+.+|++++...+.   ......++..+|.++...|++++|+.+|
T Consensus       251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  330 (406)
T 3sf4_A          251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA  330 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            7777665543      567778888888888888888888888876433   3333556778899999999999999999


Q ss_pred             HHHHhhC------CCcHHHHHHHHHHHHHcCChHH
Q 011845          311 RSSLNIN------SQSYITWMTWAQLEEDQGNSVR  339 (476)
Q Consensus       311 ~~al~~~------p~~~~~~~~l~~~~~~~g~~~~  339 (476)
                      ++++++.      +....++..++.++...|+...
T Consensus       331 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            9988773      2335677888888888887644

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.96  E-value=5.3e-28  Score=228.71  Aligned_cols=297  Identities=13%  Similarity=0.029  Sum_probs=256.8

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------CcC
Q 011845            9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN----PYIWQCWAVLENKLGNIGKARELFDASTVA------DKG   78 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~   78 (476)
                      .....++.+|.++...|++++|+..|++++... |.+    ..++..+|.++...|++++|+..+++++..      .|.
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            445678899999999999999999999999987 666    467889999999999999999999999865      345


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhcc--------------------HHH
Q 011845           79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN------EYIYQTLALLEAKANR--------------------YEQ  132 (476)
Q Consensus        79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~--------------------~~~  132 (476)
                      ...++..+|.++...|++++|+..+++++...|..      ..++..+|.++...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            56789999999999999999999999999886543      4589999999999999                    999


Q ss_pred             HHHHHHHHHhcC------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHH
Q 011845          133 ARNLFRQATKCN------PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN------RFAWHVWGIFEANMGFIDK  200 (476)
Q Consensus       133 A~~~~~~~~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~  200 (476)
                      |+.++++++...      +....++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            999999998863      3345688999999999999999999999999875543      3488999999999999999


Q ss_pred             HHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhH
Q 011845          201 GKKLLKIGHAVNPRD------PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDT  268 (476)
Q Consensus       201 A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~  268 (476)
                      |+..+++++...+..      ..++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999877655      6688999999999999999999999999875433      5688899999999999999


Q ss_pred             HHHHHHHHHccCCC---ChhHHHHHHHHHHHHHHhCCHHHH
Q 011845          269 ARELYERALSIDST---TESAARCLQAWGVLEQRVGNLSAA  306 (476)
Q Consensus       269 A~~~~~~a~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A  306 (476)
                      |+.++++++++.+.   ......++..+|.++...|+...+
T Consensus       326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  366 (406)
T 3sf4_A          326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST  366 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence            99999999987432   334456778889999999887443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.95  E-value=8.5e-27  Score=222.55  Aligned_cols=344  Identities=12%  Similarity=0.025  Sum_probs=254.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845           15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNI---GKARELFDASTVADKGHIAAWHGWAVLEL   91 (476)
Q Consensus        15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~la~~~~   91 (476)
                      ..+|..+.+.|++++|+..|+++.+.   .++.+++.+|.++...|+.   ++|+.+|++++..   ++.+++.+|.++.
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~---g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL---GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---TCCTGGGTCC-------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence            56889999999999999999999765   3677888899999999988   9999999999865   7788999999777


Q ss_pred             HhC-----CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHH---HHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           92 RQG-----NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQA---RNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        92 ~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                      ..+     ++++|+.+|++++..  .++.+++.+|.+|...+...++   ...+.++..  +.++.+++.+|.+|...+.
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~  156 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGT  156 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTC
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC
Confidence            666     889999999999885  4455889999999987765544   444444433  3457889999999998885


Q ss_pred             HHHH----HHHHHHHHHcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCH
Q 011845          164 NLAA----RQLFERAVQASPKNRFAWHVWGIFEANMG---FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY----STA  232 (476)
Q Consensus       164 ~~~A----~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~  232 (476)
                      ++++    ..+++.+...+|   .+++.+|.+|...|   ++++|+..|+++....|.....++.+|.+|...    +++
T Consensus       157 ~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~  233 (452)
T 3e4b_A          157 YDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE  233 (452)
T ss_dssp             GGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred             cccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence            5444    444444444444   48899999999999   999999999999999999888889999998765    789


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhC-----CHH
Q 011845          233 NLARKLFRRASEIDPRHQPVWIAWGWM-E--WKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG-----NLS  304 (476)
Q Consensus       233 ~~A~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~  304 (476)
                      ++|+.+|+++.   |.++.+++.+|.+ +  ...+++++|+.+|+++.+..  +   ...++.+|.+|. .|     +++
T Consensus       234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~---~~A~~~Lg~~y~-~G~g~~~d~~  304 (452)
T 3e4b_A          234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--Q---PRAELLLGKLYY-EGKWVPADAK  304 (452)
T ss_dssp             HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHH-HCSSSCCCHH
T ss_pred             HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHH-cCCCCCCCHH
Confidence            99999999988   8888999999998 4  46889999999999998654  4   335678898888 66     999


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhh-hhhcchhhhhhhh----cccchHHHHHH
Q 011845          305 AARRLFRSSLNINSQSYITWMTWAQLEED----QGNSVRAEEIRNLYFQQR-TEVVDDASWVMGF----MDIIDPALDRI  375 (476)
Q Consensus       305 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----~g~~~~A~~~~  375 (476)
                      +|+.+|+++.   +.++.+++++|.+|..    ..++++|...|+++.+.. +.....+|.+|..    ..++.+|..+|
T Consensus       305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~  381 (452)
T 3e4b_A          305 AAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFS  381 (452)
T ss_dssp             HHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred             HHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence            9999999988   8889999999988877    348999999999888743 3455667777653    35889999999


Q ss_pred             HHHhcccc
Q 011845          376 KQLLNLEK  383 (476)
Q Consensus       376 ~~al~~~p  383 (476)
                      +++.+..+
T Consensus       382 ~~A~~~g~  389 (452)
T 3e4b_A          382 QLAKAQDT  389 (452)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHCCC
Confidence            99987644

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.95  E-value=1.5e-26  Score=219.29  Aligned_cols=271  Identities=13%  Similarity=0.031  Sum_probs=157.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHhhcc------CCCcHH
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHI----AAWHGWAVLELRQGNIKKARQLLAKGLKF------CGGNEY  115 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~  115 (476)
                      ...+..+|..+...|++++|+..|++++...|.++    .++..+|.++...|++++|+..+++++..      .|....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            34556677778888888888888888887777765    46777888888888888888888877766      345566


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHhcc-----------------HHHHHHHHH
Q 011845          116 IYQTLALLEAKANRYEQARNLFRQATKC------NPKSCASWIAWSQMEMQQEN-----------------NLAARQLFE  172 (476)
Q Consensus       116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~  172 (476)
                      ++..+|.+|...|++++|+.+|++++..      .+....++..+|.++...|+                 +++|+.+++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            7777788888888888888888777776      34445567777777777777                 677777766


Q ss_pred             HHHHcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          173 RAVQAS------PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP------VLLQSLALLEYKYSTANLARKLFR  240 (476)
Q Consensus       173 ~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~  240 (476)
                      +++...      +....++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++|+.+|+
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            666542      11233555555566666666666666655555443211      144444444444445444444444


Q ss_pred             HHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC---ChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011845          241 RASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSIDST---TESAARCLQAWGVLEQRVGNLSAARRLFR  311 (476)
Q Consensus       241 ~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  311 (476)
                      +++...+..      ..++..+|.++...|++++|+.++++++...+.   ......++..+|.++...|++++|..+|+
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            444443321      233444444444444444444444444433211   11112233334444444444444444444


Q ss_pred             HHHhh
Q 011845          312 SSLNI  316 (476)
Q Consensus       312 ~al~~  316 (476)
                      +++++
T Consensus       368 ~al~~  372 (411)
T 4a1s_A          368 QHLQL  372 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.95  E-value=3.8e-27  Score=223.34  Aligned_cols=274  Identities=13%  Similarity=0.010  Sum_probs=242.6

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHhhc------CcC
Q 011845            9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENP----YIWQCWAVLENKLGNIGKARELFDASTVA------DKG   78 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~   78 (476)
                      .....++.+|..+...|++++|+..|++++... |.++    .++..+|.++...|++++|+..|++++..      .|.
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            345667889999999999999999999999987 6665    58899999999999999999999999876      566


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhcc-----------------HHHHHH
Q 011845           79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKF------CGGNEYIYQTLALLEAKANR-----------------YEQARN  135 (476)
Q Consensus        79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~  135 (476)
                      ...++..+|.++...|++++|+..+++++..      .+....++..+|.+|...|+                 +++|+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            7789999999999999999999999999988      45566789999999999999                 999999


Q ss_pred             HHHHHHhcC------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCHHHHHH
Q 011845          136 LFRQATKCN------PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR------FAWHVWGIFEANMGFIDKGKK  203 (476)
Q Consensus       136 ~~~~~~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~  203 (476)
                      ++++++...      +....++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++|+.
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE  284 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999998764      23345889999999999999999999999998876432      388999999999999999999


Q ss_pred             HHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCChhHHHH
Q 011845          204 LLKIGHAVNPRD------PVLLQSLALLEYKYSTANLARKLFRRASEIDPR------HQPVWIAWGWMEWKEGNLDTARE  271 (476)
Q Consensus       204 ~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~  271 (476)
                      .+++++...+..      ..++..+|.++...|++++|+.++++++...+.      ...++..+|.++...|++++|+.
T Consensus       285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            999999887643      568899999999999999999999999987543      24588899999999999999999


Q ss_pred             HHHHHHccCCCC
Q 011845          272 LYERALSIDSTT  283 (476)
Q Consensus       272 ~~~~a~~~~~~~  283 (476)
                      +|++++++.+..
T Consensus       365 ~~~~al~~~~~~  376 (411)
T 4a1s_A          365 YAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHHCCHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999987654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.95  E-value=2.5e-26  Score=211.07  Aligned_cols=277  Identities=13%  Similarity=0.050  Sum_probs=137.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------CcCcHHH
Q 011845           13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGEN----PYIWQCWAVLENKLGNIGKARELFDASTVA------DKGHIAA   82 (476)
Q Consensus        13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~   82 (476)
                      .++..|..+...|++++|+..|+++++.. |.+    ..++..+|.++...|++++|+..+++++..      .|....+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            34455555555555555555555555554 333    234455555555555555555555555443      2222344


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845           83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE  162 (476)
Q Consensus        83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~  162 (476)
                      +..+|.++...|++++|+..++++++..+....                            .+....++..+|.++...|
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~  137 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------------------KVGEARALYNLGNVYHAKG  137 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------------------chHHHHHHHHHHHHHHHcC
Confidence            445555555555555555555555443321100                            0000114444444444444


Q ss_pred             c--------------------HHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 011845          163 N--------------------NLAARQLFERAVQAS------PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD-  215 (476)
Q Consensus       163 ~--------------------~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-  215 (476)
                      +                    +++|+..+++++...      +....++..+|.++...|++++|+..+++++...+.. 
T Consensus       138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  217 (338)
T 3ro2_A          138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG  217 (338)
T ss_dssp             HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence            4                    444444444444321      1122344455555555555555555555554433211 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC--
Q 011845          216 -----PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSIDST--  282 (476)
Q Consensus       216 -----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--  282 (476)
                           ..++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++...+.  
T Consensus       218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  297 (338)
T 3ro2_A          218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK  297 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence                 1245555555555555555555555555543332      345556666666666666666666666554322  


Q ss_pred             -ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 011845          283 -TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS  318 (476)
Q Consensus       283 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  318 (476)
                       ......++..+|.++...|++++|..+|++++.+.+
T Consensus       298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence             222233455566666666666666666666666544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.95  E-value=8.6e-27  Score=208.12  Aligned_cols=256  Identities=14%  Similarity=0.058  Sum_probs=134.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhccC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845           17 LGKVLSKQSKVAEARAIYAKGSQAT---QGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ   93 (476)
Q Consensus        17 la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   93 (476)
                      ++..+...|++++|+..|+++++..   +|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~   90 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA   90 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence            3334444556666666666666542   1234455566666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845           94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFER  173 (476)
Q Consensus        94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  173 (476)
                      |++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++......++.. ...|++++|+..+++
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            6666666666666665555555556666666666666666666666655555554433333322 334555555555555


Q ss_pred             HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 011845          174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW  253 (476)
Q Consensus       174 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  253 (476)
                      ++...|.+...+ .++.++...++.++|+..+.+++...|..                              .|.++.++
T Consensus       170 ~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~~~~  218 (275)
T 1xnf_A          170 HFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSL------------------------------AEHLSETN  218 (275)
T ss_dssp             HHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHH------------------------------HHHHHHHH
T ss_pred             HHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccc------------------------------cccccHHH
Confidence            555555443332 23444444444444555554444433321                              00123455


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845          254 IAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLF  310 (476)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  310 (476)
                      ..+|.++...|++++|+..|++++..+|++..      ..+.++...|++++|++.|
T Consensus       219 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFV------EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH------HHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH------HHHHHHHHHHHHHhhHHHH
Confidence            55666666666666666666666665554422      1244555555555555554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.95  E-value=5.3e-26  Score=198.98  Aligned_cols=215  Identities=16%  Similarity=0.178  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA  125 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  125 (476)
                      +..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            44555556666666666666666666666666666666666666666666666666666666665655566666666666


Q ss_pred             HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 011845          126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLL  205 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  205 (476)
                      ..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            66666666666666666666555555666666666666666666666666555555555555555555555555555555


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 011845          206 KIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWME  260 (476)
Q Consensus       206 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  260 (476)
                      ++++...|.++.++..+|.++...|++++|+.+|+++++..|+++.++..++.+.
T Consensus       183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555555554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.95  E-value=5.6e-26  Score=202.82  Aligned_cols=247  Identities=15%  Similarity=0.048  Sum_probs=157.2

Q ss_pred             hCCHHHHHHHHHHhhccC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH
Q 011845           93 QGNIKKARQLLAKGLKFC----GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR  168 (476)
Q Consensus        93 ~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~  168 (476)
                      .|++++|+..|+++++..    |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence            344555555555555442    2334455555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845          169 QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR  248 (476)
Q Consensus       169 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  248 (476)
                      ..|++++..+|.++.++..+|.++...|++++|+..+++++...|+++.....++.. ...|++++|+..+++++...|.
T Consensus        98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~  176 (275)
T 1xnf_A           98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDK  176 (275)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCc
Confidence            555555555555555555566666666666666666666666666555444433332 4456777777777777777766


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 011845          249 HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE-SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTW  327 (476)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  327 (476)
                      +...+. ++.++...++.++|+..+++++...|... .....+..+|.++...|++++|+.+|++++..+|++...   .
T Consensus       177 ~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~  252 (275)
T 1xnf_A          177 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---H  252 (275)
T ss_dssp             CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---H
T ss_pred             chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---H
Confidence            655443 66666777778888888888887765432 124568889999999999999999999999999987554   3


Q ss_pred             HHHHHHcCChHHHHHHH
Q 011845          328 AQLEEDQGNSVRAEEIR  344 (476)
Q Consensus       328 ~~~~~~~g~~~~A~~~~  344 (476)
                      +.++...|++++|++.+
T Consensus       253 ~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          253 RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHhhHHHH
Confidence            67888899999998876

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.95  E-value=1.9e-25  Score=202.65  Aligned_cols=251  Identities=13%  Similarity=0.173  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHhhcCcCcHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHhhc-cCCCcHHHHHHHHHHHHHh
Q 011845           63 GKARELFDASTVADKGHIAAWHGWAVLELR-------QGNI-------KKARQLLAKGLK-FCGGNEYIYQTLALLEAKA  127 (476)
Q Consensus        63 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~  127 (476)
                      ++|+..|++++..+|.++.+|+.+|.++..       .|++       ++|+.+|+++++ +.|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            678888888888888888888888888764       4775       888999999988 6888888888899888888


Q ss_pred             ccHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Q 011845          128 NRYEQARNLFRQATKCNPKSCA-SWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN-MGFIDKGKKLL  205 (476)
Q Consensus       128 g~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  205 (476)
                      |++++|+..|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+..+|...+.+... .|++++|+.+|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999988888876 888888888888999999999999998888887777766666443 68999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845          206 KIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEI---DP-RHQPVWIAWGWMEWKEGNLDTARELYERALSIDS  281 (476)
Q Consensus       206 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  281 (476)
                      +++++.+|+++.+|..++.++...|++++|+.+|++++..   .| ....+|..++..+...|+++.|..+++++++..|
T Consensus       193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            9999999988999999999998899999999999999885   44 3677888888888889999999999999999888


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 011845          282 TTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWA  328 (476)
Q Consensus       282 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  328 (476)
                      ++.....    ++.+.   .        -.+.+.++|+++..+..+|
T Consensus       273 ~~~~~~~----~~~~~---~--------r~~~l~~~P~~~~~ln~lg  304 (308)
T 2ond_A          273 EEYEGKE----TALLV---D--------RYKFMDLYPCSASELKALG  304 (308)
T ss_dssp             TTTSSCH----HHHHH---T--------TTCBTTBCSSCHHHHHTTT
T ss_pred             cccccch----HHHHH---H--------HHHhcccCCCCHHHHHhcC
Confidence            7643211    11111   1        1156677888888877665

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.95  E-value=3e-26  Score=210.59  Aligned_cols=253  Identities=13%  Similarity=0.034  Sum_probs=161.0

Q ss_pred             cccccCCCC----chhHHHHHHHHHhcCCHHHHHHHHHHhhccC-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845            2 KCIDYWPED----GRPYVALGKVLSKQSKVAEARAIYAKGSQAT-----QGENPYIWQCWAVLENKLGNIGKARELFDAS   72 (476)
Q Consensus         2 ~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~   72 (476)
                      ++++.+|++    ..++..+|.++...|++++|+..+++++...     ++....++..+|.++...|++++|+..++++
T Consensus        30 ~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  109 (338)
T 3ro2_A           30 AAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH  109 (338)
T ss_dssp             HHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            356677887    4688899999999999999999999998652     1344678899999999999999999999999


Q ss_pred             hhcCcCc------HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHhhccC------CCcHHHHHHH
Q 011845           73 TVADKGH------IAAWHGWAVLELRQGN--------------------IKKARQLLAKGLKFC------GGNEYIYQTL  120 (476)
Q Consensus        73 ~~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~------p~~~~~~~~l  120 (476)
                      +...+..      ..++..+|.++...|+                    +++|+..+++++...      +....++..+
T Consensus       110 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  189 (338)
T 3ro2_A          110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL  189 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            8765433      3477788888888888                    777777777766542      2223455666


Q ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCchh------HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845          121 ALLEAKANRYEQARNLFRQATKCNPKSCA------SWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN  194 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  194 (476)
                      |.++...|++++|+.++++++...+....      ++..+|.++...|++++|+..+++++...+....           
T Consensus       190 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------  258 (338)
T 3ro2_A          190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----------  258 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-----------
Confidence            66666666666666666666655432221      4555555555555555555555555544322100           


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhH
Q 011845          195 MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDT  268 (476)
Q Consensus       195 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~  268 (476)
                                       .+....++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++
T Consensus       259 -----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  321 (338)
T 3ro2_A          259 -----------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ  321 (338)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             -----------------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence                             00003344555555555555555555555555443211      3355666666666677777


Q ss_pred             HHHHHHHHHccCCC
Q 011845          269 ARELYERALSIDST  282 (476)
Q Consensus       269 A~~~~~~a~~~~~~  282 (476)
                      |..++++++++.+.
T Consensus       322 A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          322 AMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHh
Confidence            77666666665543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.95  E-value=6.9e-26  Score=198.26  Aligned_cols=220  Identities=15%  Similarity=0.125  Sum_probs=190.1

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL   89 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~   89 (476)
                      .+..++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.+
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            45778999999999999999999999999987 88999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHH
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQ  169 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~  169 (476)
                      +...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 011845          170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS  230 (476)
Q Consensus       170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  230 (476)
                      .+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..++.+....+
T Consensus       181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999999988887665443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.94  E-value=8.4e-25  Score=192.55  Aligned_cols=210  Identities=12%  Similarity=0.030  Sum_probs=174.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA  125 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  125 (476)
                      +.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            67778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhccHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 011845          126 KANRYEQARNLFRQATK--CNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK  203 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  203 (476)
                      ..|++++|+.++++++.  ..|.+..++..+|.++...|++++|+..+++++...|.+..++..++.++...|++++|+.
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            88888888888888887  6677777888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 011845          204 LLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIA  255 (476)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  255 (476)
                      .+++++...|.+..++..++.++...|++++|..+++++++..|+++..+..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            8888888888888888888888888888888888888888888887766543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.94  E-value=2e-24  Score=186.46  Aligned_cols=212  Identities=11%  Similarity=0.036  Sum_probs=124.9

Q ss_pred             CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHH
Q 011845            7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGW   86 (476)
Q Consensus         7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l   86 (476)
                      .|+++.+++.+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            45555666666666666666666666666666555 55555666666666666666666666666666666666666666


Q ss_pred             HHHHHHh-CCHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           87 AVLELRQ-GNIKKARQLLAKGLK--FCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        87 a~~~~~~-~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                      |.++... |++++|+..++++++  ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence            6666666 666666666666655  3444455555556666556666666666666555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 011845          164 NLAARQLFERAVQASP-KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL  219 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  219 (476)
                      +++|+..+++++...| .+...+..++.++...|+.++|..+++.+....|+++.+.
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  219 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ  219 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence            5555555555555555 5555555555555555555555555555555555555443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.94  E-value=3.5e-25  Score=211.39  Aligned_cols=354  Identities=14%  Similarity=0.058  Sum_probs=266.2

Q ss_pred             CCCCchhHHHHHHHHHhcCCH---HHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhcCcC
Q 011845            7 WPEDGRPYVALGKVLSKQSKV---AEARAIYAKGSQATQGENPYIWQCWAVLENKLG-----NIGKARELFDASTVADKG   78 (476)
Q Consensus         7 ~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~~~~~p~   78 (476)
                      +++++.+++.+|.+|...|++   ++|+.+|+++++.    ++.+++.+|.++...|     ++++|+.+|++++..  .
T Consensus        31 ~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g  104 (452)
T 3e4b_A           31 ELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--G  104 (452)
T ss_dssp             HHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--T
T ss_pred             HCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--C
Confidence            356889999999999999999   9999999999854    6788999999777766     889999999999884  4


Q ss_pred             cHHHHHHHHHHHHHhCCHHHH---HHHHHHhhccCCCcHHHHHHHHHHHHHhcc----HHHHHHHHHHHHhcCCCchhHH
Q 011845           79 HIAAWHGWAVLELRQGNIKKA---RQLLAKGLKFCGGNEYIYQTLALLEAKANR----YEQARNLFRQATKCNPKSCASW  151 (476)
Q Consensus        79 ~~~~~~~la~~~~~~~~~~~A---~~~~~~~~~~~p~~~~~~~~la~~~~~~g~----~~~A~~~~~~~~~~~p~~~~~~  151 (476)
                      ++.+++.+|.+|...+...++   ...+.++..  +.++.+++.+|.+|...+.    .+.+..+++.+...   ++.++
T Consensus       105 ~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~  179 (452)
T 3e4b_A          105 EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICY  179 (452)
T ss_dssp             CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHH
T ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHH
Confidence            556899999999987765444   444444433  3567899999999999984    44555555555544   44599


Q ss_pred             HHHHHHHHHhc---cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011845          152 IAWSQMEMQQE---NNLAARQLFERAVQASPKNRFAWHVWGIFEANM----GFIDKGKKLLKIGHAVNPRDPVLLQSLAL  224 (476)
Q Consensus       152 ~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~  224 (476)
                      +.+|.+|...|   ++++|+.+|+++.+..|.....++.+|.+|...    +++++|+.+|+++.   |.++.+++.+|.
T Consensus       180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~  256 (452)
T 3e4b_A          180 VELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQ  256 (452)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHH
T ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence            99999999999   999999999999999999999889999999766    79999999999998   889999999999


Q ss_pred             H-H--HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q 011845          225 L-E--YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG-----NLDTARELYERALSIDSTTESAARCLQAWGVL  296 (476)
Q Consensus       225 ~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~  296 (476)
                      + +  ...+++++|+.+|+++.+.  .++.+++.+|.+|. .|     ++++|+.+|+++.   +.++.   .++++|.+
T Consensus       257 ~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~---A~~~Lg~~  327 (452)
T 3e4b_A          257 LLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA---ADYYLGQI  327 (452)
T ss_dssp             HHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH---HHHHHHHH
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH---HHHHHHHH
Confidence            8 4  5789999999999999865  48899999999998 56     9999999999999   66644   47788988


Q ss_pred             HHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhhhh-hcchhhhhhhh--c
Q 011845          297 EQR----VGNLSAARRLFRSSLNINSQSYITWMTWAQLEED----QGNSVRAEEIRNLYFQQRTE-VVDDASWVMGF--M  365 (476)
Q Consensus       297 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~--~  365 (476)
                      |..    ..++++|+.+|+++.+  +.++.+.++++.+|..    ..++.+|...|+.+...... ....++.+...  .
T Consensus       328 y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~  405 (452)
T 3e4b_A          328 YRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTP  405 (452)
T ss_dssp             HHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCH
T ss_pred             HHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCH
Confidence            887    3499999999999986  4667889999999985    45899999999999875442 22333333332  3


Q ss_pred             ccchHHHHHHHHHhccccCC
Q 011845          366 DIIDPALDRIKQLLNLEKSS  385 (476)
Q Consensus       366 g~~~~A~~~~~~al~~~p~~  385 (476)
                      ++..+|....++..+..+..
T Consensus       406 ~~~~~a~~~~~~~~~~~~~~  425 (452)
T 3e4b_A          406 AQRAEGQRLVQQELAARGTL  425 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhcccc
Confidence            47788888888888876663

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.94  E-value=4.7e-24  Score=190.17  Aligned_cols=229  Identities=14%  Similarity=0.098  Sum_probs=118.4

Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845            8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENK----LGNIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus         8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      |+++.+++.+|.++...|++++|+.+|+++++   +.++.+++.+|.++..    .+++++|+.+|+++++.+  ++.++
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            44555555555555555555555555555544   2344455555555555    555555555555555442  44455


Q ss_pred             HHHHHHHHH----hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845           84 HGWAVLELR----QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM  159 (476)
Q Consensus        84 ~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  159 (476)
                      +.+|.++..    .+++++|+..|+++++.  +++.+                                  +..+|.+|.
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a----------------------------------~~~lg~~~~  121 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEG----------------------------------CASLGGIYH  121 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH----------------------------------HHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccH----------------------------------HHHHHHHHH
Confidence            555555555    55555555555555443  24444                                  444444444


Q ss_pred             H----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---
Q 011845          160 Q----QENNLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK---  228 (476)
Q Consensus       160 ~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---  228 (476)
                      .    .+++++|+.+|+++++..  ++.++..+|.++..    .+++++|+..|+++++.  .++.++..+|.++..   
T Consensus       122 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~  197 (273)
T 1ouv_A          122 DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEG  197 (273)
T ss_dssp             HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCS
T ss_pred             cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Confidence            4    445555555555554433  33444555555554    55555555555555544  234555555555555   


Q ss_pred             -cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHccCCCC
Q 011845          229 -YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK----EGNLDTARELYERALSIDSTT  283 (476)
Q Consensus       229 -~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~  283 (476)
                       .+++++|+.+|+++++..|  +.++..+|.++..    .+++++|+.+|+++++..|++
T Consensus       198 ~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          198 ATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence             5555555555555555543  4555556666655    566666666666666555543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.94  E-value=8.7e-24  Score=188.44  Aligned_cols=234  Identities=13%  Similarity=0.114  Sum_probs=188.7

Q ss_pred             CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCchhHH
Q 011845           76 DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKCNPKSCASW  151 (476)
Q Consensus        76 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~  151 (476)
                      +|.++.+++.+|.++...|++++|+.+|+++++  |.++.++..+|.++..    .+++++|+.+|+++++..  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            466777888888888888888888888888877  6677788888888888    888888888888888774  67788


Q ss_pred             HHHHHHHHH----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011845          152 IAWSQMEMQ----QENNLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLA  223 (476)
Q Consensus       152 ~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la  223 (476)
                      ..+|.++..    .+++++|+.+|+++++..  ++.++..+|.++..    .+++++|+.+|+++++..  ++.++..+|
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  153 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            888888888    888888888888888763  77888888888888    888888998888888865  577888888


Q ss_pred             HHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 011845          224 LLEYK----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK----EGNLDTARELYERALSIDSTTESAARCLQAWGV  295 (476)
Q Consensus       224 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~  295 (476)
                      .++..    .+++++|+.+|+++++.  .++.++..+|.++..    .+++++|+.+|+++++..|     ...+..+|.
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~  226 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----GGGCFNLGA  226 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-----HHHHHHHHH
Confidence            88888    88888888888888876  357888888888888    8888888888888888755     234677788


Q ss_pred             HHHH----hCCHHHHHHHHHHHHhhCCCcHHHH
Q 011845          296 LEQR----VGNLSAARRLFRSSLNINSQSYITW  324 (476)
Q Consensus       296 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~  324 (476)
                      ++..    .+++++|+.+|+++++..|++...+
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~  259 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI  259 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888    8888888888888888887665443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.94  E-value=1.7e-24  Score=190.59  Aligned_cols=210  Identities=16%  Similarity=0.107  Sum_probs=137.0

Q ss_pred             CcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845           76 DKGH-IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAW  154 (476)
Q Consensus        76 ~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  154 (476)
                      +|.. +.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence            3443 566666666666677777777777766666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhccHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 011845          155 SQMEMQQENNLAARQLFERAVQ--ASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA  232 (476)
Q Consensus       155 a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  232 (476)
                      |.++...|++++|+.++++++.  ..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence            6666666666666666666666  55566666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845          233 NLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES  285 (476)
Q Consensus       233 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  285 (476)
                      ++|+..++++++..|.+...+..++.++...|++++|..+++++++..|+++.
T Consensus       192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  244 (252)
T 2ho1_A          192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE  244 (252)
T ss_dssp             HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence            66666666666666666666666666666666666666666666666665543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.94  E-value=4.1e-24  Score=184.46  Aligned_cols=210  Identities=13%  Similarity=0.027  Sum_probs=109.9

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845           43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL  122 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~  122 (476)
                      |.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHh-ccHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 011845          123 LEAKA-NRYEQARNLFRQATK--CNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFID  199 (476)
Q Consensus       123 ~~~~~-g~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  199 (476)
                      ++... |++++|+..++++++  ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            55555 555555555555555  333334445555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 011845          200 KGKKLLKIGHAVNP-RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV  252 (476)
Q Consensus       200 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  252 (476)
                      +|+..+++++...| .++..+..++.++...|+.+.|..+++.+.+..|+++.+
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  218 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL  218 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence            55555555555554 444444444444445555555555554444444444443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.93  E-value=4.9e-24  Score=193.37  Aligned_cols=266  Identities=11%  Similarity=0.093  Sum_probs=228.2

Q ss_pred             CCCchhHHHHHHHHHhc----CCH----HHHHHHHHHhhccCCCCChHHHHHHHHHHHH-------cCCH-------HHH
Q 011845            8 PEDGRPYVALGKVLSKQ----SKV----AEARAIYAKGSQATQGENPYIWQCWAVLENK-------LGNI-------GKA   65 (476)
Q Consensus         8 p~~~~~~~~la~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A   65 (476)
                      |.....|......-...    ++.    ++|+..|++++... |.++.+|+.+|..+..       .|++       ++|
T Consensus         5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A   83 (308)
T 2ond_A            5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA   83 (308)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence            34455666666654443    243    78999999999998 9999999999998874       5885       999


Q ss_pred             HHHHHHHhh-cCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845           66 RELFDASTV-ADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEY-IYQTLALLEAKANRYEQARNLFRQATKC  143 (476)
Q Consensus        66 ~~~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~  143 (476)
                      +..|++++. .+|++..+|..+|.++...|++++|+.+|+++++..|.++. +|..+|.++...|++++|+..|+++++.
T Consensus        84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A           84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            999999999 79999999999999999999999999999999999999887 9999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC-CCHHH
Q 011845          144 NPKSCASWIAWSQMEMQ-QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV---NP-RDPVL  218 (476)
Q Consensus       144 ~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~-~~~~~  218 (476)
                      .|....+|...+.+... .|++++|+.+|+++++.+|+++.+|..++.++...|++++|+.+|++++..   .| ....+
T Consensus       164 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l  243 (308)
T 2ond_A          164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI  243 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            99998888877776544 699999999999999999999999999999999999999999999999996   44 37889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845          219 LQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA  286 (476)
Q Consensus       219 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  286 (476)
                      |..++.++...|+++.|..+++++++..|++..... ++.+.   .+        .+.+.+.|+++..
T Consensus       244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~~---~r--------~~~l~~~P~~~~~  299 (308)
T 2ond_A          244 WARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALLV---DR--------YKFMDLYPCSASE  299 (308)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHHH---TT--------TCBTTBCSSCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHHH---HH--------HHhcccCCCCHHH
Confidence            999999999999999999999999999998653321 12111   11        1556678888654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=1.8e-24  Score=180.65  Aligned_cols=170  Identities=14%  Similarity=0.153  Sum_probs=91.5

Q ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 011845          113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFE  192 (476)
Q Consensus       113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  192 (476)
                      ++.+|+.+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 011845          193 ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAREL  272 (476)
Q Consensus       193 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  272 (476)
                      ...++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHccCCC
Q 011845          273 YERALSIDST  282 (476)
Q Consensus       273 ~~~a~~~~~~  282 (476)
                      |+++++++|+
T Consensus       164 ~~~al~~~p~  173 (184)
T 3vtx_A          164 FKKALEKEEK  173 (184)
T ss_dssp             HHHHHHTTHH
T ss_pred             HHHHHhCCcc
Confidence            5555555443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=1.7e-24  Score=180.85  Aligned_cols=170  Identities=14%  Similarity=0.099  Sum_probs=90.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845           45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE  124 (476)
Q Consensus        45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  124 (476)
                      ++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.+..++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 011845          125 AKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKL  204 (476)
Q Consensus       125 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  204 (476)
                      ...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhcCCC
Q 011845          205 LKIGHAVNPR  214 (476)
Q Consensus       205 ~~~~~~~~~~  214 (476)
                      |+++++.+|+
T Consensus       164 ~~~al~~~p~  173 (184)
T 3vtx_A          164 FKKALEKEEK  173 (184)
T ss_dssp             HHHHHHTTHH
T ss_pred             HHHHHhCCcc
Confidence            5555555443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.93  E-value=8.8e-25  Score=209.92  Aligned_cols=215  Identities=13%  Similarity=0.101  Sum_probs=157.9

Q ss_pred             CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845           95 NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRY-EQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFER  173 (476)
Q Consensus        95 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  173 (476)
                      .+++++..+++.....|.+..+++.+|.++...|++ ++|+..|+++++.+|+++.+|..+|.+|...|++++|+.+|++
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            356666666666666677777777777777777777 7777777777777777777777777777777777777777777


Q ss_pred             HHHcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHH
Q 011845          174 AVQASPKNRFAWHVWGIFEANM---------GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY--------STANLAR  236 (476)
Q Consensus       174 a~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~  236 (476)
                      +++.+|+ ..++..+|.++...         |++++|+..|+++++.+|+++.++..+|.++...        |++++|+
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            7777776 46777777777777         7777777777777777777777777777777777        7777777


Q ss_pred             HHHHHHhccCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845          237 KLFRRASEIDP---RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSS  313 (476)
Q Consensus       237 ~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  313 (476)
                      ..|+++++.+|   .++.+|+.+|.++...|++++|+..|+++++++|++..   .+..++.++...|++++|+..+.+.
T Consensus       242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE---PQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            77777777777   77777777777777777777777777777777777743   3566677777777777777777665

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.93  E-value=1.5e-24  Score=208.34  Aligned_cols=217  Identities=15%  Similarity=0.025  Sum_probs=206.5

Q ss_pred             cCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCH-HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 011845           59 LGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNI-KKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLF  137 (476)
Q Consensus        59 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  137 (476)
                      .+.+++++..+++.....|.+..+++.+|.++...|++ ++|+..|+++++.+|.+..++..+|.+|...|++++|+.+|
T Consensus        81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34578899999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHh---------ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc--------CCHHH
Q 011845          138 RQATKCNPKSCASWIAWSQMEMQQ---------ENNLAARQLFERAVQASPKNRFAWHVWGIFEANM--------GFIDK  200 (476)
Q Consensus       138 ~~~~~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------~~~~~  200 (476)
                      +++++.+|+ ..++..+|.++...         |++++|+..|+++++.+|+++.+|..+|.++...        |++++
T Consensus       161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            999999998 69999999999999         9999999999999999999999999999999999        99999


Q ss_pred             HHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845          201 GKKLLKIGHAVNP---RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERA  276 (476)
Q Consensus       201 A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (476)
                      |+..|++++..+|   .++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+.+.
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999   999999999999999999999999999999999999999999999999999999999887654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.93  E-value=4.4e-22  Score=195.87  Aligned_cols=380  Identities=12%  Similarity=0.100  Sum_probs=305.2

Q ss_pred             ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCc--
Q 011845            3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN---IGKARELFDASTVADK--   77 (476)
Q Consensus         3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p--   77 (476)
                      .|..+|.+...|..++......+.++.+..+|++++... |.....|..++....+.|+   ++.+..+|++++...|  
T Consensus        58 ~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~  136 (679)
T 4e6h_A           58 MIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGN  136 (679)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCC
T ss_pred             HHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCC
Confidence            567899999999999999999999999999999999998 9999999999999999999   9999999999999884  


Q ss_pred             CcHHHHHHHHHHHHHhCCH--------HHHHHHHHHhhcc----CCCcHHHHHHHHHHHH---------HhccHHHHHHH
Q 011845           78 GHIAAWHGWAVLELRQGNI--------KKARQLLAKGLKF----CGGNEYIYQTLALLEA---------KANRYEQARNL  136 (476)
Q Consensus        78 ~~~~~~~~la~~~~~~~~~--------~~A~~~~~~~~~~----~p~~~~~~~~la~~~~---------~~g~~~~A~~~  136 (476)
                      .++..|..........++.        +....+|++++..    ++.+..+|........         ..++.+.+..+
T Consensus       137 ~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~i  216 (679)
T 4e6h_A          137 NDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKL  216 (679)
T ss_dssp             CCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHH
Confidence            6788999888777666653        3344788887753    5667778877766543         34567788888


Q ss_pred             HHHHHhcCCCc-h-hHH---------------------------------------------------------------
Q 011845          137 FRQATKCNPKS-C-ASW---------------------------------------------------------------  151 (476)
Q Consensus       137 ~~~~~~~~p~~-~-~~~---------------------------------------------------------------  151 (476)
                      |++++.. |.. . ..|                                                               
T Consensus       217 y~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~  295 (679)
T 4e6h_A          217 YKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPN  295 (679)
T ss_dssp             HHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTT
T ss_pred             HHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCc
Confidence            8888864 321 1 111                                                               


Q ss_pred             ----------HHHHHHHHHhc-------cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCC
Q 011845          152 ----------IAWSQMEMQQE-------NNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK-KLLKIGHAVNP  213 (476)
Q Consensus       152 ----------~~la~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~  213 (476)
                                ..+.......+       ........|++++...|.++.+|+.++..+...|+.++|. .+|++++..+|
T Consensus       296 ~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P  375 (679)
T 4e6h_A          296 EYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP  375 (679)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT
T ss_pred             hhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC
Confidence                      11111100000       1223457899999999999999999999999999999997 99999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----------CC-----------CHHHHHHHHHHHHHcCChhHHHH
Q 011845          214 RDPVLLQSLALLEYKYSTANLARKLFRRASEID-----------PR-----------HQPVWIAWGWMEWKEGNLDTARE  271 (476)
Q Consensus       214 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------~~-----------~~~~~~~l~~~~~~~g~~~~A~~  271 (476)
                      .+..+|..++.+....|++++|..+|++++...           |.           ...+|...+.+..+.|+.+.|..
T Consensus       376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~  455 (679)
T 4e6h_A          376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK  455 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999998752           43           34578999999999999999999


Q ss_pred             HHHHHHcc-CCCChhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          272 LYERALSI-DSTTESAARCLQAWGVLEQRVGN-LSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       272 ~~~~a~~~-~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      +|.++++. .+..   ..++...+.+....|+ .+.|..+|+.+++..|+++..|..++.++...|+.+.|..+|++++.
T Consensus       456 vf~~A~~~~~~~~---~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~  532 (679)
T 4e6h_A          456 IFGKCRRLKKLVT---PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID  532 (679)
T ss_dssp             HHHHHHHTGGGSC---THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCC---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            99999987 3333   2345566777767654 99999999999999999999999999999999999999999999998


Q ss_pred             hhh------hhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845          350 QRT------EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK  387 (476)
Q Consensus       350 ~~~------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  387 (476)
                      ..+      .++......-...|+.+.+...++++.+..|+++.
T Consensus       533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence            665      23344444555779999999999999999998654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.93  E-value=5.5e-24  Score=199.54  Aligned_cols=300  Identities=9%  Similarity=0.004  Sum_probs=157.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CChHHHHHH----HHHHHHcCCHHHHH-----------HHHHHHhh
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQG--ENPYIWQCW----AVLENKLGNIGKAR-----------ELFDASTV   74 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l----a~~~~~~g~~~~A~-----------~~~~~~~~   74 (476)
                      ...+.-...++..+++++|..+++.+.+..+.  .+..+....    .......+++..+.           ..++++-.
T Consensus        13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~   92 (383)
T 3ulq_A           13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK   92 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh
Confidence            33444455566778888888887777543211  233333211    12222333444444           44444322


Q ss_pred             cCcCcHH------HHHHHHHHHHHhCCHHHHHHHHHHhhccC---C---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845           75 ADKGHIA------AWHGWAVLELRQGNIKKARQLLAKGLKFC---G---GNEYIYQTLALLEAKANRYEQARNLFRQATK  142 (476)
Q Consensus        75 ~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  142 (476)
                       .|....      .++.+|.++...|++++|+..+++++...   +   ....++..+|.+|...|++++|+.++++++.
T Consensus        93 -~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~  171 (383)
T 3ulq_A           93 -KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE  171 (383)
T ss_dssp             -HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             222222      23346777777777777777777776651   2   2345667777777777777777777777766


Q ss_pred             cCCCc-------hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845          143 CNPKS-------CASWIAWSQMEMQQENNLAARQLFERAVQASPKN------RFAWHVWGIFEANMGFIDKGKKLLKIGH  209 (476)
Q Consensus       143 ~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~  209 (476)
                      ..+..       ..++..+|.++...|++++|+..|++++...+..      ..++..+|.++...|++++|+.++++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            53322       2356666666666666666666666666553321      2345555666666666666666666655


Q ss_pred             h-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHcCC---hhHHHHHHHH
Q 011845          210 A-----VN-PRDPVLLQSLALLEYKYSTANLARKLFRRASEID-----PRHQPVWIAWGWMEWKEGN---LDTARELYER  275 (476)
Q Consensus       210 ~-----~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~  275 (476)
                      .     .+ |..+.++..+|.++...|++++|+.++++++...     |.....+..+|.++...|+   +.+|+.++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~  331 (383)
T 3ulq_A          252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES  331 (383)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            5     23 4444555555555555555555555555555442     1111223345555555555   4444444444


Q ss_pred             HHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          276 ALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       276 a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                      .    +..+....++..+|.+|...|++++|..+|++++.+
T Consensus       332 ~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          332 K----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             T----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3    222222334444555555555555555555555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.92  E-value=1.1e-22  Score=176.16  Aligned_cols=209  Identities=10%  Similarity=0.058  Sum_probs=141.0

Q ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 011845          113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNP-KSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIF  191 (476)
Q Consensus       113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  191 (476)
                      ++..++.+|.++...|++++|+..|+++++..| .+..+++.+|.++...|++++|+..|++++..+|++..++..+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            445555666666666666666666666666655 5555555566666666666666666666666666666666666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHH
Q 011845          192 EANMGFIDKGKKLLKIGHAVNPRDP-------VLLQSLALLEYKYSTANLARKLFRRASEIDPR--HQPVWIAWGWMEWK  262 (476)
Q Consensus       192 ~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~  262 (476)
                      +...|++++|+..++++++..|+++       .++..+|.++...|++++|+..|+++++.+|+  ++.++..+|.++..
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  165 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN  165 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence            6666666666666666666666665       45777778888888888888888888888888  77888888888865


Q ss_pred             cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845          263 EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLE  331 (476)
Q Consensus       263 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  331 (476)
                      .|     ...++++..+.+.....   +  .+......+.+++|+.+|+++++++|++..++..++.+.
T Consensus       166 ~~-----~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          166 NG-----ADVLRKATPLASSNKEK---Y--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HH-----HHHHHHHGGGTTTCHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHhcccCCHHH---H--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            54     34556666666555322   1  244455667788899999999999999888887777664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.92  E-value=1.2e-23  Score=197.27  Aligned_cols=301  Identities=11%  Similarity=-0.022  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc---CcHHHH--HHH--HHHHHHhCCHHHHH-----------HHHHHhhc
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADK---GHIAAW--HGW--AVLELRQGNIKKAR-----------QLLAKGLK  108 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~--~~l--a~~~~~~~~~~~A~-----------~~~~~~~~  108 (476)
                      .....-...+...+++++|..+++.+.+.-+   .+...+  +.+  .......+++..+.           ..++++-.
T Consensus        13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~   92 (383)
T 3ulq_A           13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK   92 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh
Confidence            3344445566778889999888888754321   233332  221  12222333333333           44444322


Q ss_pred             cCCCcHH------HHHHHHHHHHHhccHHHHHHHHHHHHhcC---CC---chhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845          109 FCGGNEY------IYQTLALLEAKANRYEQARNLFRQATKCN---PK---SCASWIAWSQMEMQQENNLAARQLFERAVQ  176 (476)
Q Consensus       109 ~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  176 (476)
                       .|....      .++..|.++...|++++|+..|++++...   ++   ...++..+|.++...|++++|+..++++++
T Consensus        93 -~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~  171 (383)
T 3ulq_A           93 -KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE  171 (383)
T ss_dssp             -HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             222222      33447778888888888888888887762   22   345777788888888888888888888777


Q ss_pred             cCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845          177 ASPK-------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYKYSTANLARKLFRRAS  243 (476)
Q Consensus       177 ~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~  243 (476)
                      ..+.       ...++..+|.++...|++++|+..+++++...+..      ..++.++|.++...|++++|+.+|++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            6332       23466777777777777777777777777654322      2366677777777777777777777777


Q ss_pred             c-----cC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC--ChhHHHHHHHHHHHHHHhCC---HHHHHHHHHH
Q 011845          244 E-----ID-PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST--TESAARCLQAWGVLEQRVGN---LSAARRLFRS  312 (476)
Q Consensus       244 ~-----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~  312 (476)
                      +     .+ |..+.++..+|.++...|++++|+.++++++.+.+.  ++.....+..+|.++...|+   +++|+.++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~  331 (383)
T 3ulq_A          252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES  331 (383)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            6     34 555666777777777777777777777777665322  22222224456777777776   6666666665


Q ss_pred             HHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          313 SLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       313 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      . ...|....++..+|.++...|++++|...+++++.
T Consensus       332 ~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          332 K-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             C-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5 22333445566666666666666666666555554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.92  E-value=4.4e-23  Score=178.63  Aligned_cols=214  Identities=14%  Similarity=0.114  Sum_probs=191.2

Q ss_pred             CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHH
Q 011845            7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGW   86 (476)
Q Consensus         7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l   86 (476)
                      .|.++..++.+|.+++..|++++|+..|++++...++.+..+++.+|.++...|++++|+..|++++..+|.+..++..+
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            35677999999999999999999999999999998438889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhccCCCcH-------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC--chhHHHHHHHH
Q 011845           87 AVLELRQGNIKKARQLLAKGLKFCGGNE-------YIYQTLALLEAKANRYEQARNLFRQATKCNPK--SCASWIAWSQM  157 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~  157 (476)
                      |.++...|++++|+..++++++..|+++       .++..+|.++...|++++|+..|+++++.+|+  ++.++..+|.+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            9999999999999999999999999998       66999999999999999999999999999999  99999999999


Q ss_pred             HHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011845          158 EMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY  227 (476)
Q Consensus       158 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  227 (476)
                      +...|+     ..++++..+.+.+...+  .+......+.+++|+..++++++.+|+++.+...++.+..
T Consensus       163 ~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          163 FYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            987665     44566667766664443  3444556778999999999999999999999988887754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.91  E-value=1.8e-21  Score=197.36  Aligned_cols=312  Identities=15%  Similarity=0.100  Sum_probs=252.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCH
Q 011845           17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNI   96 (476)
Q Consensus        17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~   96 (476)
                      .|.++...|.+++|..+|+++-     ....   .+...+...|++++|+++++++     +.+.+|+.+|.++...|++
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD-----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC-----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCH
Confidence            4999999999999999999972     1111   1233345889999999999876     5688999999999999999


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845           97 KKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ  176 (476)
Q Consensus        97 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  176 (476)
                      ++|+..|.++     +++..+..++.++.+.|++++|+++|..+.+..++ +.+-..+|.+|.+.+++++ ++.|.    
T Consensus      1122 kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI---- 1190 (1630)
T 1xi4_A         1122 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI---- 1190 (1630)
T ss_pred             HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----
Confidence            9999999886     78899999999999999999999999999988743 3334458999999998885 44442    


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 011845          177 ASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAW  256 (476)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  256 (476)
                      ..+ +...+..+|..+...|++++|..+|.++        ..|..++.++.+.|++++|++.++++     .+..+|...
T Consensus      1191 ~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev 1256 (1630)
T 1xi4_A         1191 NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEV 1256 (1630)
T ss_pred             hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHH
Confidence            233 3456778999999999999999999985        47889999999999999999999988     456899999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--
Q 011845          257 GWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQ--  334 (476)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--  334 (476)
                      +.++...|+|..|..+... +..+|+.      +..++..|...|.+++|+.++++++.++|.+...+..++.++.+.  
T Consensus      1257 ~~acve~~Ef~LA~~cgl~-Iiv~~de------Leeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A         1257 CFACVDGKEFRLAQMCGLH-IVVHADE------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred             HHHHhhhhHHHHHHHHHHh-hhcCHHH------HHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence            9999999999999988774 4444443      557789999999999999999999999999999998888888764  


Q ss_pred             CChHHHHHHHHHHHhh--------hhhhcchhhhhhhhcccchHHHH
Q 011845          335 GNSVRAEEIRNLYFQQ--------RTEVVDDASWVMGFMDIIDPALD  373 (476)
Q Consensus       335 g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~A~~  373 (476)
                      ++..++.+.|......        ....|......|.+.|+++.|+.
T Consensus      1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            3555666666655552        22456777788888999998883

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.91  E-value=5.4e-21  Score=193.93  Aligned_cols=330  Identities=13%  Similarity=0.049  Sum_probs=228.7

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQG---ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA   87 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la   87 (476)
                      ++---...+.|...|.+.+|++.|++++... .   ++...-..++.+..+. +..+..++..+.-..+      .-.+|
T Consensus       985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA 1056 (1630)
T 1xi4_A          985 PEEVSVTVKAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIA 1056 (1630)
T ss_pred             HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHH
Confidence            3344556778889999999999999998432 3   3444444455544444 3344444444332111      22377


Q ss_pred             HHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHH
Q 011845           88 VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAA  167 (476)
Q Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A  167 (476)
                      .++...|.+++|..+|+++-    ...   ..+..++...|++++|.++++++     +.+.+|..+|.++...|++++|
T Consensus      1057 ~Iai~lglyEEAf~IYkKa~----~~~---~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A         1057 NIAISNELFEEAFAIFRKFD----VNT---SAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHHcC----CHH---HHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHH
Confidence            88888888888888888863    111   11233344778888888887764     5577888888888888888888


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 011845          168 RQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP  247 (476)
Q Consensus       168 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  247 (476)
                      +..|.++     +++..+...+.++.+.|++++|+++|..+.+..++ +.+-..+|.+|.+.+++++ ++.|.    ..+
T Consensus      1125 IdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~~~ 1193 (1630)
T 1xi4_A         1125 IDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI----NGP 1193 (1630)
T ss_pred             HHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----hCC
Confidence            8888775     67778888888888888888888888888777643 3333457788888887774 33332    122


Q ss_pred             CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 011845          248 RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTW  327 (476)
Q Consensus       248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  327 (476)
                       +...+..+|..+...|+|++|..+|.++           ..|..++.++.++|++++|++.++++     .+..+|...
T Consensus      1194 -n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev 1256 (1630)
T 1xi4_A         1194 -NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEV 1256 (1630)
T ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHH
Confidence             3456667888888888888888888875           13667788888888888888888887     456788888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845          328 AQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEP  389 (476)
Q Consensus       328 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  389 (476)
                      +..+...|++..|..+... +...++.....+..|...|.+++|+.++++++.++|.+....
T Consensus      1257 ~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A         1257 CFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred             HHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence            8888888888888776553 444566666777778888888888888888888776654443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=5.9e-24  Score=193.18  Aligned_cols=247  Identities=15%  Similarity=0.160  Sum_probs=155.7

Q ss_pred             CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhcc-------CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----
Q 011845            7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQA-------TQGENPYIWQCWAVLENKLGNIGKARELFDASTVA----   75 (476)
Q Consensus         7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----   75 (476)
                      +|....++..+|.++...|++++|+.+|++++..       ..+....++..+|.++...|++++|+..|++++..    
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            4566677888888888888888888888888763       23555677788888888888888888888888765    


Q ss_pred             ----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845           76 ----DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC--------GGNEYIYQTLALLEAKANRYEQARNLFRQATKC  143 (476)
Q Consensus        76 ----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  143 (476)
                          .|....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.++++++..
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                34556677778888888888888888888777653        344556777777777777777777777777776


Q ss_pred             --------CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          144 --------NPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN---------RFAWHVWGIFEANMGFIDKGKKLLK  206 (476)
Q Consensus       144 --------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~  206 (476)
                              .|....++..+|.++...|++++|+..++++++..+..         ...+..                   
T Consensus       183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-------------------  243 (311)
T 3nf1_A          183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH-------------------  243 (311)
T ss_dssp             HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-------------------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-------------------
Confidence                    45555667777777777777777777777776543221         111111                   


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845          207 IGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS  281 (476)
Q Consensus       207 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  281 (476)
                               ...+...+..+...+.+.+|...+..+....|..+.++..+|.++...|++++|+.+|++++++.|
T Consensus       244 ---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          244 ---------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             ---------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                     112222333334444555555566666655666666666666666666666666666666665544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.90  E-value=4.8e-23  Score=205.18  Aligned_cols=169  Identities=17%  Similarity=0.128  Sum_probs=94.8

Q ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845          111 GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI  190 (476)
Q Consensus       111 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  190 (476)
                      |+++.++.++|.+|..+|++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++|++..+++++|.
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN   85 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHH
Q 011845          191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAR  270 (476)
Q Consensus       191 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  270 (476)
                      ++...|++++|++.|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|.
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHcc
Q 011845          271 ELYERALSI  279 (476)
Q Consensus       271 ~~~~~a~~~  279 (476)
                      +.+++++++
T Consensus       166 ~~~~kal~l  174 (723)
T 4gyw_A          166 ERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            555555544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.90  E-value=8.4e-23  Score=203.44  Aligned_cols=169  Identities=14%  Similarity=0.081  Sum_probs=84.9

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845           43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL  122 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~  122 (476)
                      |+++.++..+|.++..+|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|++..++..+|.
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN   85 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 011845          123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK  202 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  202 (476)
                      ++..+|++++|++.|+++++++|++..++..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|.
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence            55555555555555555555555554555555555555555555555555555555554444455555555555555444


Q ss_pred             HHHHHHHhc
Q 011845          203 KLLKIGHAV  211 (476)
Q Consensus       203 ~~~~~~~~~  211 (476)
                      +.+++++++
T Consensus       166 ~~~~kal~l  174 (723)
T 4gyw_A          166 ERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            444444443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=191.16  Aligned_cols=249  Identities=16%  Similarity=0.125  Sum_probs=172.9

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC----
Q 011845           43 GENPYIWQCWAVLENKLGNIGKARELFDASTVA--------DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC----  110 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----  110 (476)
                      |....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++...    
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            556778899999999999999999999999873        56667888899999999999999999999888762    


Q ss_pred             ----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc-
Q 011845          111 ----GGNEYIYQTLALLEAKANRYEQARNLFRQATKCN--------PKSCASWIAWSQMEMQQENNLAARQLFERAVQA-  177 (476)
Q Consensus       111 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-  177 (476)
                          |....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.++++++.. 
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                4456677888888888888888888888887763        444556777777777777777777777777776 


Q ss_pred             -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--
Q 011845          178 -------SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR--  248 (476)
Q Consensus       178 -------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--  248 (476)
                             .|....++..+|.++...|++++|+..+++++...+...     .+                    ...+.  
T Consensus       184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~--------------------~~~~~~~  238 (311)
T 3nf1_A          184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE-----FG--------------------SVDDENK  238 (311)
T ss_dssp             HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-----HC--------------------------C
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----CC--------------------CCCcchH
Confidence                   444556666777777777777777777776665432100     00                    00111  


Q ss_pred             ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845          249 ----HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ  319 (476)
Q Consensus       249 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  319 (476)
                          ....+...+..+...+.+.+|...++++....|..   ..++..+|.++...|++++|..+|++++++.|+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV---TTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             CHHHHHHHHHHC-------CCSCCCC---------CHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence                12334445556667788889999999988766555   556888999999999999999999999998775

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.90  E-value=5.2e-22  Score=175.63  Aligned_cols=211  Identities=13%  Similarity=0.010  Sum_probs=100.1

Q ss_pred             CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---hh
Q 011845           76 DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKS---CA  149 (476)
Q Consensus        76 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~  149 (476)
                      .|.++..++.+|..+...|++++|+..|++++...|.+   ..+++.+|.++...|++++|+..|+++++..|++   +.
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            34445555555555555555555555555555555544   4455555555555555555555555555554432   33


Q ss_pred             HHHHHHHHHHH--------hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 011845          150 SWIAWSQMEMQ--------QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQS  221 (476)
Q Consensus       150 ~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  221 (476)
                      +++.+|.++..        .|++++|+..|++++...|+++.+...+..+....+.                 ....++.
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~~~  153 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQYE  153 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence            45555555555        5555555555555555555543332222111111000                 0112344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHc----------CChhHHHHHHHHHHccCCCChhHHH
Q 011845          222 LALLEYKYSTANLARKLFRRASEIDPR---HQPVWIAWGWMEWKE----------GNLDTARELYERALSIDSTTESAAR  288 (476)
Q Consensus       222 la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~  288 (476)
                      +|.++...|++++|+..|+++++..|+   .+.+++.+|.++...          |++++|+..|+++++..|+++....
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  233 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT  233 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence            455555555555555555555554444   233445555555443          4455555555555555555544444


Q ss_pred             HHHHHHHHHHHhCCH
Q 011845          289 CLQAWGVLEQRVGNL  303 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~  303 (476)
                      ....++.++...+++
T Consensus       234 a~~~l~~~~~~~~~~  248 (261)
T 3qky_A          234 AEELYTRARQRLTEL  248 (261)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            444444444444443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.89  E-value=9.5e-22  Score=173.94  Aligned_cols=217  Identities=11%  Similarity=-0.010  Sum_probs=176.8

Q ss_pred             ccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---
Q 011845          108 KFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS---CASWIAWSQMEMQQENNLAARQLFERAVQASPKN---  181 (476)
Q Consensus       108 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---  181 (476)
                      ...|.++..++.+|..+...|++++|+..|++++...|++   +.+++.+|.++...|++++|+..|+++++..|++   
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            4567788888999999999999999999999999988888   7888899999999999999999999999887743   


Q ss_pred             HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 011845          182 RFAWHVWGIFEAN--------MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW  253 (476)
Q Consensus       182 ~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  253 (476)
                      +.+++.+|.++..        .|++++|+..|++++...|+++.+...+..+....+.                 ....+
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~  151 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHH
Confidence            6778888888888        8888888888888888888876655444333222111                 12347


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhhCCCcH--
Q 011845          254 IAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV----------GNLSAARRLFRSSLNINSQSY--  321 (476)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~--  321 (476)
                      +.+|.++...|++++|+..|+++++..|+++.....+..+|.++...          |++++|+..|+++++..|+++  
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            89999999999999999999999999999887777899999999977          999999999999999999986  


Q ss_pred             -HHHHHHHHHHHHcCChHHHH
Q 011845          322 -ITWMTWAQLEEDQGNSVRAE  341 (476)
Q Consensus       322 -~~~~~l~~~~~~~g~~~~A~  341 (476)
                       .+...++.++...++++++.
T Consensus       232 ~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          232 RTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHHhhhhh
Confidence             45666777777766665543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.89  E-value=9.4e-21  Score=176.90  Aligned_cols=267  Identities=13%  Similarity=0.068  Sum_probs=141.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH------H
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPY----IWQCWAVLENKLGNIGKARELFDASTVADKGHI------A   81 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~   81 (476)
                      .++..+|.++...|++++|+..+++++...++.+..    ++..+|.++...|++++|+..+++++...|...      .
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            455666777777777777777777777665333322    455666777777777777777777765443221      2


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-----h
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFC--------GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS-----C  148 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~  148 (476)
                      ++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|..++++++...+..     .
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            34566666667777777777776666543        2223455556666666666666666666666655431     2


Q ss_pred             hHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC--cHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HH
Q 011845          149 ASWIAWSQMEMQQENNLAARQLFERAVQASPK--NRFAWH-----VWGIFEANMGFIDKGKKLLKIGHAVNPRD----PV  217 (476)
Q Consensus       149 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~  217 (476)
                      .++..+|.++...|++++|...+++++...+.  .+..+.     ..+.++...|++++|...+++++...+..    ..
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            34555666666666666666666665544211  111111     12233445555555555555555443321    11


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845          218 LLQSLALLEYKYSTANLARKLFRRASEIDPR------HQPVWIAWGWMEWKEGNLDTARELYERALS  278 (476)
Q Consensus       218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  278 (476)
                      .+..++.++...|++++|...+++++...+.      ...++..+|.++...|++++|...+++++.
T Consensus       255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            2334444444444444444444444433211      012333344444444444444444444443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.89  E-value=4.5e-21  Score=179.33  Aligned_cols=230  Identities=10%  Similarity=-0.017  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-------ch
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCG------GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK-------SC  148 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~~  148 (476)
                      .++..|..+...|++++|+..|++++...+      ....++..+|.+|...|++++|+.++++++...+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            345567777777777777777777766532      22446666777777777777777777777665332       12


Q ss_pred             hHHHHHHHHHHHhccHHHHHHHHHHHHHcCC---C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHH
Q 011845          149 ASWIAWSQMEMQQENNLAARQLFERAVQASP---K---NRFAWHVWGIFEANMGFIDKGKKLLKIGHA-----VNPRDPV  217 (476)
Q Consensus       149 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~  217 (476)
                      .++..+|.++...|++++|+..|++++...+   +   ...++..+|.++...|++++|+.++++++.     .+|..+.
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            3455666666666666666666666665421   1   123455555555555555555555555555     4444444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHccCCCChhHHHH
Q 011845          218 LLQSLALLEYKYSTANLARKLFRRASEIDP-----RHQPVWIAWGWMEWKEGN---LDTARELYERALSIDSTTESAARC  289 (476)
Q Consensus       218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~  289 (476)
                      ++..+|.++...|++++|+.+++++++..+     .....+..++.++...|+   +.+|+.++++.    ...+....+
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~  338 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEAC  338 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHH
Confidence            555555555555555555555555554422     112233344444444444   44444444431    112222333


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845          290 LQAWGVLEQRVGNLSAARRLFRSSLN  315 (476)
Q Consensus       290 ~~~l~~~~~~~g~~~~A~~~~~~al~  315 (476)
                      +..+|.+|...|++++|..+|+++++
T Consensus       339 ~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          339 ARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44445555555555555555555443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.89  E-value=6.3e-21  Score=169.36  Aligned_cols=228  Identities=11%  Similarity=0.090  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHhhcCcCcHHHHHHHHHHH----HHh---CCHHH
Q 011845           28 AEARAIYAKGSQATQGENPYIWQCWAVLENKLG--NIGKARELFDASTVADKGHIAAWHGWAVLE----LRQ---GNIKK   98 (476)
Q Consensus        28 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~----~~~---~~~~~   98 (476)
                      ++|+..+.+++..+ |.+..+|+..+.++...|  ++++++.++..++..+|++..+|...+.++    ...   +++++
T Consensus        50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~  128 (306)
T 3dra_A           50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR  128 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred             HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence            45555555555555 555555555555555555  555555555555555555555555555555    333   45555


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH--HHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc------HHHHHHH
Q 011845           99 ARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE--QARNLFRQATKCNPKSCASWIAWSQMEMQQEN------NLAARQL  170 (476)
Q Consensus        99 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~------~~~A~~~  170 (476)
                      ++.++.++++.+|.+..+|...+.++...|.++  +++++++++++.+|.+..+|...+.++...+.      +++++++
T Consensus       129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~  208 (306)
T 3dra_A          129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNY  208 (306)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence            555555555555555555555555555555555  55555555555555555555555555555444      5555555


Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-c
Q 011845          171 FERAVQASPKNRFAWHVWGIFEANMGFIDK-GKKLLKIGHAVN---PRDPVLLQSLALLEYKYSTANLARKLFRRASE-I  245 (476)
Q Consensus       171 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~  245 (476)
                      +.+++..+|.+..+|+.++.++...|+..+ ...++.+++...   |.++.++..++.++.+.|+.++|+++|+.+.+ .
T Consensus       209 ~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~  288 (306)
T 3dra_A          209 VKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY  288 (306)
T ss_dssp             HHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence            555555555555555555555555544322 233444444333   44445555555555555555555555555443 4


Q ss_pred             CCCCHHHHHHH
Q 011845          246 DPRHQPVWIAW  256 (476)
Q Consensus       246 ~~~~~~~~~~l  256 (476)
                      +|-....|...
T Consensus       289 Dpir~~yW~~~  299 (306)
T 3dra_A          289 NPIRSNFWDYQ  299 (306)
T ss_dssp             CGGGHHHHHHH
T ss_pred             ChHHHHHHHHH
Confidence            55444444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.89  E-value=2.6e-20  Score=173.86  Aligned_cols=270  Identities=11%  Similarity=0.008  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-----HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc------HH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHI-----AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN------EY  115 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~  115 (476)
                      .++...|.++...|++++|+..+++++...|...     .++..+|.++...|++++|+..+++++...|..      ..
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            4455566666777777777777777766555332     245566666666777777777777666654322      12


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC-----cH
Q 011845          116 IYQTLALLEAKANRYEQARNLFRQATKCN--------PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK-----NR  182 (476)
Q Consensus       116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~  182 (476)
                      ++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|...+++++...+.     ..
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            34556666666666666666666666543        222334555666666666666666666666655443     12


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC-HHHHH----HHHHHHHHcCCHHHHHHHHHHHhccCCCC----HH
Q 011845          183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVNP--RD-PVLLQ----SLALLEYKYSTANLARKLFRRASEIDPRH----QP  251 (476)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-~~~~~----~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~  251 (476)
                      .++..++.++...|++++|...+++++...+  .. .....    ..+.++...|++++|...+++++...|..    ..
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            3445555555555555555555555554321  11 11110    12233445555555555555554443321    12


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh---hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          252 VWIAWGWMEWKEGNLDTARELYERALSIDSTTE---SAARCLQAWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                      .+..++.++...|++++|...+++++...+...   ....++..+|.++...|++++|...+++++..
T Consensus       255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            334444445555555555555554444322211   11223334444444444444444444444443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.89  E-value=2.2e-20  Score=165.91  Aligned_cols=230  Identities=10%  Similarity=0.077  Sum_probs=155.9

Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhcCCCchhHHHHHHHHH----HHh---ccHHHH
Q 011845           97 KKARQLLAKGLKFCGGNEYIYQTLALLEAKAN--RYEQARNLFRQATKCNPKSCASWIAWSQME----MQQ---ENNLAA  167 (476)
Q Consensus        97 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~----~~~---~~~~~A  167 (476)
                      ++|+.++.+++.++|++..+|...+.++...|  ++++++.+++.++..+|.+..+|...+.++    ...   ++++++
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E  129 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE  129 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence            35555555555555555555555555555555  666666666666666666666666666655    444   566666


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHH
Q 011845          168 RQLFERAVQASPKNRFAWHVWGIFEANMGFID--KGKKLLKIGHAVNPRDPVLLQSLALLEYKYST------ANLARKLF  239 (476)
Q Consensus       168 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------~~~A~~~~  239 (476)
                      +.++.++++.+|.+..+|...+.++...|.++  ++++++.++++.+|.+..+|...+.++...+.      ++++++++
T Consensus       130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~  209 (306)
T 3dra_A          130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV  209 (306)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence            67777777777776667766666666666666  67777777777777777777777776666665      77788888


Q ss_pred             HHHhccCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHccC---CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845          240 RRASEIDPRHQPVWIAWGWMEWKEGNLDT-ARELYERALSID---STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLN  315 (476)
Q Consensus       240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  315 (476)
                      .+++..+|++..+|+.++.++...|+... ...++.+++...   |.++   .++..++.++.+.|+.++|+++|+.+.+
T Consensus       210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS---FALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            88888888888888888888877777544 445666666654   4443   3456668888888888888888888875


Q ss_pred             -hCCCcHHHHHHHHH
Q 011845          316 -INSQSYITWMTWAQ  329 (476)
Q Consensus       316 -~~p~~~~~~~~l~~  329 (476)
                       .+|-....|...+.
T Consensus       287 ~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          287 KYNPIRSNFWDYQIS  301 (306)
T ss_dssp             TTCGGGHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHh
Confidence             68887777766554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.88  E-value=7.9e-23  Score=186.85  Aligned_cols=286  Identities=13%  Similarity=0.110  Sum_probs=138.4

Q ss_pred             HHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHH
Q 011845           20 VLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKA   99 (476)
Q Consensus        20 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A   99 (476)
                      .....|+.++|.+++++.      +++.+|..+|.++.+.|++++|++.|.++     .++..+...+..+...|++++|
T Consensus        12 ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeA   80 (449)
T 1b89_A           12 LIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEEL   80 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHH
Confidence            334678889999999887      23468999999999999999999999764     4566888888888889999999


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Q 011845          100 RQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP  179 (476)
Q Consensus       100 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  179 (476)
                      +.+++.+.+..+ ++.+...++.+|.++|++.++.++++.     | +..+|..+|..+...|.+++|..+|.++     
T Consensus        81 i~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----  148 (449)
T 1b89_A           81 VKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-----
T ss_pred             HHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence            998888887543 367788889999999999998877752     4 3458999999999999999999999876     


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 011845          180 KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWM  259 (476)
Q Consensus       180 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  259 (476)
                         ..|..++.++.++|++++|++.++++     .++.+|...+.++...|+++.|..+... +...|   +-...++.+
T Consensus       149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~a---d~l~~lv~~  216 (449)
T 1b89_A          149 ---SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA---DELEELINY  216 (449)
T ss_dssp             ---TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCH---HHHHHHHHH
T ss_pred             ---hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCH---hhHHHHHHH
Confidence               36788999999999999999999988     4788899999999999999999776664 22444   445568888


Q ss_pred             HHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHH
Q 011845          260 EWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQ--RVGNLSAARRLFRSSLNINS-----QSYITWMTWAQLEE  332 (476)
Q Consensus       260 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~  332 (476)
                      |.+.|++++|+.++++++.+++.+..   ++..+|.+|.  +.++..+.++.|...+.+.|     .+...|..+..+|.
T Consensus       217 Yek~G~~eEai~lLe~aL~le~ah~~---~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~  293 (449)
T 1b89_A          217 YQDRGYFEELITMLEAALGLERAHMG---MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD  293 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSTTCCHH---HHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999998877744   4566666665  45677788888887777777     77788999999999


Q ss_pred             HcCChHHHHHH
Q 011845          333 DQGNSVRAEEI  343 (476)
Q Consensus       333 ~~g~~~~A~~~  343 (476)
                      +.++++.|...
T Consensus       294 ~~~e~d~A~~t  304 (449)
T 1b89_A          294 KYEEYDNAIIT  304 (449)
T ss_dssp             HTTCHHHHHHH
T ss_pred             hhchHHHHHHH
Confidence            99999988765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.88  E-value=1.5e-21  Score=195.74  Aligned_cols=188  Identities=9%  Similarity=-0.095  Sum_probs=173.0

Q ss_pred             hcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhh--------ccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 011845           74 VADKGHIAAWHGWAVLELRQGNIKKARQLLAKGL--------KFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNP  145 (476)
Q Consensus        74 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  145 (476)
                      ..+|.++.+++..+   ...|++++|+..+++++        +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            45677777777666   78899999999999999        88999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011845          146 KSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALL  225 (476)
Q Consensus       146 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  225 (476)
                      ++..+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|+++.+++++|.+
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~  543 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA  543 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 011845          226 EYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGN  265 (476)
Q Consensus       226 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  265 (476)
                      +...|++++|+..|+++++.+|++..++.++|.++...++
T Consensus       544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999999877665

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.88  E-value=1.8e-21  Score=174.88  Aligned_cols=182  Identities=11%  Similarity=0.007  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------H
Q 011845          150 SWIAWSQMEMQQENNLAARQLFERAVQASPKN------RFAWHVWGIFEANM-GFIDKGKKLLKIGHAVNPRD------P  216 (476)
Q Consensus       150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~  216 (476)
                      ++..+|.+|...|++++|+.+|++++.+.+..      ..++..+|.+|... |++++|+.+|++++.+.|.+      .
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~  158 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            44444444444445555555554444443321      23555666666664 66666666666666665533      3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH-------HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHH--
Q 011845          217 VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP-------VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA--  287 (476)
Q Consensus       217 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--  287 (476)
                      .++..+|.++...|++++|+.+|++++...|++..       .+..+|.++...|++++|+..|+++++++|+.....  
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  238 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES  238 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence            45667777777777777777777777777665432       567777788888888888888888888777654431  


Q ss_pred             HHHHHHHHHHH--HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845          288 RCLQAWGVLEQ--RVGNLSAARRLFRSSLNINSQSYITWMTWAQLE  331 (476)
Q Consensus       288 ~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  331 (476)
                      ..+..++..+.  ..+++++|+..|++++.++|....++..+-...
T Consensus       239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            23344455443  456688888888888887777766655554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.88  E-value=1.3e-21  Score=196.04  Aligned_cols=185  Identities=12%  Similarity=-0.042  Sum_probs=148.3

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh--------hcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH
Q 011845           43 GENPYIWQCWAVLENKLGNIGKARELFDAST--------VADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE  114 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  114 (476)
                      |.++..++..+   ...|++++|+..|++++        ..+|++..+++.+|.++...|++++|+..|+++++.+|++.
T Consensus       391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~  467 (681)
T 2pzi_A          391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW  467 (681)
T ss_dssp             TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred             CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence            66666666655   66788888888888888        77788888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845          115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN  194 (476)
Q Consensus       115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  194 (476)
                      .+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|++..+++.+|.++..
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~  546 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA  546 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888 888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 011845          195 MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYST  231 (476)
Q Consensus       195 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  231 (476)
                      .|++++|+..|+++++.+|++..++.++|.++...++
T Consensus       547 ~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          547 EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            8888888888888888888888888888888766554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.88  E-value=3.2e-22  Score=182.89  Aligned_cols=291  Identities=11%  Similarity=0.041  Sum_probs=161.6

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHH
Q 011845            9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAV   88 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~   88 (476)
                      +++.+|..+|.++...|++++|++.|.++      .++..+...+..+...|++++|+.+++.+.+..+ ++.+...++.
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~  102 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIF  102 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHH
Confidence            34579999999999999999999999764      4666889999999999999999999998887533 4677888999


Q ss_pred             HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH
Q 011845           89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR  168 (476)
Q Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~  168 (476)
                      +|.+.|++.++.++++.     | +..+|..+|..+...|.|++|..+|.++        ..|..+|.++.+.|++++|+
T Consensus       103 ~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AV  168 (449)
T 1b89_A          103 ALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV  168 (449)
T ss_dssp             ------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHH
Confidence            99999999999887752     3 4469999999999999999999999976        47899999999999999999


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845          169 QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR  248 (476)
Q Consensus       169 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  248 (476)
                      +.++++     .++.+|...+.++...|+++.|..+... +..   ++.-...++.+|.+.|++++|+.++++++..++.
T Consensus       169 ea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a  239 (449)
T 1b89_A          169 DGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERA  239 (449)
T ss_dssp             HHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred             HHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence            999998     4789999999999999999999877765 224   4455667889999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHH--cCChhHHHHHHHHHHccCC-----CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----
Q 011845          249 HQPVWIAWGWMEWK--EGNLDTARELYERALSIDS-----TTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI-----  316 (476)
Q Consensus       249 ~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----  316 (476)
                      ...+|..+|.+|.+  .++..+.++.|...+.+.|     ..   ..+|..+..+|.+.++++.|+...-.....     
T Consensus       240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~---~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~  316 (449)
T 1b89_A          240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ---AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEG  316 (449)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHT---TTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHH---HHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhH
Confidence            99999999998875  4566666666665555544     33   335678899999999999999877665443     


Q ss_pred             -------CCCcHHHHHHHHHHHH
Q 011845          317 -------NSQSYITWMTWAQLEE  332 (476)
Q Consensus       317 -------~p~~~~~~~~l~~~~~  332 (476)
                             .+.+.++++....+|.
T Consensus       317 ~f~~~~~kv~n~elyYkai~fyl  339 (449)
T 1b89_A          317 QFKDIITKVANVELYYRAIQFYL  339 (449)
T ss_dssp             HHHHHHHHCSSTHHHHHHHHHHH
T ss_pred             HHHHHHhchhHHHHHHHHHHHHH
Confidence                   5667788888777777

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.87  E-value=1.5e-20  Score=175.70  Aligned_cols=236  Identities=12%  Similarity=0.075  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCC------CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC-------cH
Q 011845          116 IYQTLALLEAKANRYEQARNLFRQATKCNP------KSCASWIAWSQMEMQQENNLAARQLFERAVQASPK-------NR  182 (476)
Q Consensus       116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------~~  182 (476)
                      .++..|..+...|++++|+..|++++...+      ....++..+|.++...|++++|+..+++++...+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            567789999999999999999999998743      23558899999999999999999999999986442       24


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCHH
Q 011845          183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR------DPVLLQSLALLEYKYSTANLARKLFRRASE-----IDPRHQP  251 (476)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~  251 (476)
                      .++..+|.++...|++++|+..+++++...+.      ...++.++|.++...|++++|+.+|++++.     .+|..+.
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            67889999999999999999999999886431      235788899999999999999999999998     6777788


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHccCCC--ChhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHH
Q 011845          252 VWIAWGWMEWKEGNLDTARELYERALSIDST--TESAARCLQAWGVLEQRVGN---LSAARRLFRSSLNINSQSYITWMT  326 (476)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~  326 (476)
                      ++..+|.++...|++++|+.++++++++.+.  ++.....+..++.++...|+   +.+|+.++++. ...|....++..
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~  341 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS  341 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence            9999999999999999999999999987543  23333345677888888888   88888888873 233445567788


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845          327 WAQLEEDQGNSVRAEEIRNLYFQQRT  352 (476)
Q Consensus       327 l~~~~~~~g~~~~A~~~~~~~~~~~~  352 (476)
                      +|.++...|++++|...++++++...
T Consensus       342 la~~y~~~g~~~~A~~~~~~al~~~~  367 (378)
T 3q15_A          342 AAAVFESSCHFEQAAAFYRKVLKAQE  367 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998888876444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.87  E-value=4.8e-19  Score=174.39  Aligned_cols=349  Identities=13%  Similarity=0.114  Sum_probs=279.1

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCC---HHHHHHHHHHhhccCC-CCChHHHHHHHHHHHHcCCH--------HHHHHHH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSK---VAEARAIYAKGSQATQ-GENPYIWQCWAVLENKLGNI--------GKARELF   69 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~--------~~A~~~~   69 (476)
                      +++...|.....|...+......|+   ++.+..+|++++...+ +.++.+|..+.......++.        +.....|
T Consensus        91 raL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~F  170 (679)
T 4e6h_A           91 KLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAF  170 (679)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence            3677899999999999999999999   9999999999998872 26788998888776665553        3344788


Q ss_pred             HHHhh---c-CcCcHHHHHHHHHHHH---------HhCCHHHHHHHHHHhhccCCCc-H-HHH-----------------
Q 011845           70 DASTV---A-DKGHIAAWHGWAVLEL---------RQGNIKKARQLLAKGLKFCGGN-E-YIY-----------------  117 (476)
Q Consensus        70 ~~~~~---~-~p~~~~~~~~la~~~~---------~~~~~~~A~~~~~~~~~~~p~~-~-~~~-----------------  117 (476)
                      ++++.   . ++....+|........         .+++.+.+..+|++++.. |.. . .+|                 
T Consensus       171 ErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~  249 (679)
T 4e6h_A          171 QVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARR  249 (679)
T ss_dssp             HHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHH
T ss_pred             HHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHH
Confidence            88775   3 6667778877776543         345577888888888864 321 1 111                 


Q ss_pred             --------------------------------------------------------HHHHHHHHHhc-------cHHHHH
Q 011845          118 --------------------------------------------------------QTLALLEAKAN-------RYEQAR  134 (476)
Q Consensus       118 --------------------------------------------------------~~la~~~~~~g-------~~~~A~  134 (476)
                                                                              ..........+       ..+...
T Consensus       250 ~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~  329 (679)
T 4e6h_A          250 HIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMT  329 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHH
Confidence                                                                    00000000000       123345


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Q 011845          135 NLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR-QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN-  212 (476)
Q Consensus       135 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  212 (476)
                      ..|++++...|.++..|+.++..+...|+.++|. .+|++++...|.+..+|..++.+....|+++.|..+|++++... 
T Consensus       330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~  409 (679)
T 4e6h_A          330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH  409 (679)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999997 99999999999999999999999999999999999999999752 


Q ss_pred             ----------CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHcCC-hhHH
Q 011845          213 ----------PR-----------DPVLLQSLALLEYKYSTANLARKLFRRASEI-DPRHQPVWIAWGWMEWKEGN-LDTA  269 (476)
Q Consensus       213 ----------~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~-~~~A  269 (476)
                                |.           ...+|..++.+..+.|..+.|..+|.++++. .+....+|...+.+....++ ++.|
T Consensus       410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A  489 (679)
T 4e6h_A          410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA  489 (679)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred             HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH
Confidence                      43           3457899999999999999999999999987 44556788888888777654 9999


Q ss_pred             HHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845          270 RELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS---QSYITWMTWAQLEEDQGNSVRAEEIRNL  346 (476)
Q Consensus       270 ~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~  346 (476)
                      ..+|+.+++..|+++..   +..++......|+.+.|..+|++++...|   ....+|..+..+....|+.+.+..+.++
T Consensus       490 r~ife~~Lk~~p~~~~~---w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R  566 (679)
T 4e6h_A          490 CKVLELGLKYFATDGEY---INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR  566 (679)
T ss_dssp             HHHHHHHHHHHTTCHHH---HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCchHH---HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999988655   45568888899999999999999999988   4668999999999999999999999999


Q ss_pred             HHhhhhhh
Q 011845          347 YFQQRTEV  354 (476)
Q Consensus       347 ~~~~~~~~  354 (476)
                      +.+..|+.
T Consensus       567 ~~~~~P~~  574 (679)
T 4e6h_A          567 FFEKFPEV  574 (679)
T ss_dssp             HHHHSTTC
T ss_pred             HHHhCCCC
Confidence            99987753

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.86  E-value=8.6e-21  Score=170.47  Aligned_cols=210  Identities=10%  Similarity=0.010  Sum_probs=150.5

Q ss_pred             CHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCC------cHHHHHHHHHHHHHhccHHHHH
Q 011845           61 NIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG------NEYIYQTLALLEAKANRYEQAR  134 (476)
Q Consensus        61 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~  134 (476)
                      ++++|+..|+++              |.++...|++++|+..|.+++.+.+.      ...++..+|.+|...|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            477777777776              45566777778888777777766421      2456777888888888888888


Q ss_pred             HHHHHHHhcCCCc------hhHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHH
Q 011845          135 NLFRQATKCNPKS------CASWIAWSQMEMQQ-ENNLAARQLFERAVQASPKN------RFAWHVWGIFEANMGFIDKG  201 (476)
Q Consensus       135 ~~~~~~~~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A  201 (476)
                      .+|++++.+.|..      ..++..+|.+|... |++++|+.+|++++++.|..      ..++..+|.++...|++++|
T Consensus        98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            8888887776533      34677888888885 88888888888888876643      45677888888888888888


Q ss_pred             HHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH-----HHHHHHHHHH--HcCChh
Q 011845          202 KKLLKIGHAVNPRDPV-------LLQSLALLEYKYSTANLARKLFRRASEIDPRHQP-----VWIAWGWMEW--KEGNLD  267 (476)
Q Consensus       202 ~~~~~~~~~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~  267 (476)
                      +.+|++++...|.+..       ++..+|.++...|++++|+..|+++++++|+...     .+..++..+.  ..++++
T Consensus       178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~  257 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS  257 (292)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence            8888888887776543       5677888888888888888888888888887554     2344555554  356788


Q ss_pred             HHHHHHHHHHccCCCCh
Q 011845          268 TARELYERALSIDSTTE  284 (476)
Q Consensus       268 ~A~~~~~~a~~~~~~~~  284 (476)
                      +|+..|++++.++|...
T Consensus       258 ~A~~~~~~~~~l~~~~~  274 (292)
T 1qqe_A          258 EHCKEFDNFMRLDKWKI  274 (292)
T ss_dssp             HHHHHHTTSSCCCHHHH
T ss_pred             HHHHHhccCCccHHHHH
Confidence            88888888887777653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.86  E-value=6.3e-20  Score=152.86  Aligned_cols=167  Identities=16%  Similarity=0.173  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ  160 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  160 (476)
                      ..+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555555444455555555555


Q ss_pred             hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR  240 (476)
Q Consensus       161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  240 (476)
                      .|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  168 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK  168 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55555555555555544444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHhccCC
Q 011845          241 RASEIDP  247 (476)
Q Consensus       241 ~~~~~~~  247 (476)
                      ++++..|
T Consensus       169 ~~~~~~~  175 (186)
T 3as5_A          169 KANELDE  175 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHcCC
Confidence            4444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.86  E-value=4.1e-20  Score=154.02  Aligned_cols=168  Identities=15%  Similarity=0.142  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      ..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLK  206 (476)
Q Consensus       127 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  206 (476)
                      .|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|...++
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  168 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK  168 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhcCCC
Q 011845          207 IGHAVNPR  214 (476)
Q Consensus       207 ~~~~~~~~  214 (476)
                      +++...|+
T Consensus       169 ~~~~~~~~  176 (186)
T 3as5_A          169 KANELDEG  176 (186)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHcCCC
Confidence            55554444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.86  E-value=2.2e-21  Score=155.51  Aligned_cols=144  Identities=12%  Similarity=0.111  Sum_probs=64.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ  132 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  132 (476)
                      |.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|+++++++|+++.+|..+|.+|...|++++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHH-HHHHHHcCCCcHHHHHHHHHHHHHcC
Q 011845          133 ARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQL-FERAVQASPKNRFAWHVWGIFEANMG  196 (476)
Q Consensus       133 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~a~~~~~~~~~~~~~l~~~~~~~~  196 (476)
                      |+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|
T Consensus        84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            44444444444444444444444444444444433332 24444444444444444444444333

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.85  E-value=4.6e-20  Score=156.79  Aligned_cols=165  Identities=12%  Similarity=0.039  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH----------------HHHHHHHhccHHHHHHHHHHHHHcCCC
Q 011845          117 YQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA----------------WSQMEMQQENNLAARQLFERAVQASPK  180 (476)
Q Consensus       117 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~a~~~~~~  180 (476)
                      ++..|..+...|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++.+|+
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   86 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN   86 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence            3344444444444444444444444444444444433                455555555555555555555555555


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845          181 NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYST--ANLARKLFRRASEIDPRHQPVWIAWGW  258 (476)
Q Consensus       181 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~  258 (476)
                      ++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+  ...+...+.+++...|. ..+++.+|.
T Consensus        87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~  165 (208)
T 3urz_A           87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL  165 (208)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence            555555555555555555555555555555555555555555544443332  22333334333322211 123344444


Q ss_pred             HHHHcCChhHHHHHHHHHHccCCC
Q 011845          259 MEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       259 ~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                      ++...|++++|+..|++++++.|+
T Consensus       166 ~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          166 SKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCC
Confidence            444455555555555555555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.85  E-value=3.4e-21  Score=154.38  Aligned_cols=144  Identities=14%  Similarity=0.106  Sum_probs=59.6

Q ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 011845          121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDK  200 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (476)
                      |.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++++|+++.+|..+|.++...|++++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence            33333444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCCHHHHHHHHHHHHHcC
Q 011845          201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKL-FRRASEIDPRHQPVWIAWGWMEWKEG  264 (476)
Q Consensus       201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g  264 (476)
                      |+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++...+.++...|
T Consensus        84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            44444444444444444444444444444444333322 23444444444444444444443333

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.85  E-value=1.1e-19  Score=154.43  Aligned_cols=167  Identities=11%  Similarity=0.028  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHH----------------HHHHHHHhCCHHHHHHHHHHhhcc
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHG----------------WAVLELRQGNIKKARQLLAKGLKF  109 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~~~~  109 (476)
                      +..++..|..+...|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3444555555555556666666665555555555555554                555555555555555555555555


Q ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc--HHHHHHHHHHHHHcCCCcHHHHHH
Q 011845          110 CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN--NLAARQLFERAVQASPKNRFAWHV  187 (476)
Q Consensus       110 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~  187 (476)
                      +|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+  ...+...+.+++...| ...+++.
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~  162 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR  162 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence            555555555555555555555555555555555555555555555555444332  2233333433332111 1123344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011845          188 WGIFEANMGFIDKGKKLLKIGHAVNP  213 (476)
Q Consensus       188 l~~~~~~~~~~~~A~~~~~~~~~~~~  213 (476)
                      +|.++...|++++|+..|+++++.+|
T Consensus       163 ~g~~~~~~~~~~~A~~~~~~al~l~P  188 (208)
T 3urz_A          163 DGLSKLFTTRYEKARNSLQKVILRFP  188 (208)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            44444444445555555555544444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.85  E-value=1.8e-20  Score=167.52  Aligned_cols=134  Identities=17%  Similarity=0.151  Sum_probs=70.4

Q ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----
Q 011845           77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC--------GGNEYIYQTLALLEAKANRYEQARNLFRQATKC-----  143 (476)
Q Consensus        77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----  143 (476)
                      |....++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+.+|++++..     
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            3344555555555555555555555555555442        333445555555555555555555555555554     


Q ss_pred             ---CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845          144 ---NPKSCASWIAWSQMEMQQENNLAARQLFERAVQA--------SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       144 ---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  210 (476)
                         +|....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++.
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               2333445555555555555555555555555554        333344555555555555555555555555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.84  E-value=1.5e-19  Score=155.70  Aligned_cols=210  Identities=10%  Similarity=-0.061  Sum_probs=132.9

Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh---HHH
Q 011845           79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA---SWI  152 (476)
Q Consensus        79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~  152 (476)
                      .+..++.+|..+...|++++|+..|++++...|.+   ..+++.+|.++...|++++|+..|+++++..|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            34567777777777777777777777777776655   356777777777777777777777777777777654   567


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 011845          153 AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA  232 (476)
Q Consensus       153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  232 (476)
                      .+|.++...|..                ....+..++..+...|++++|+..|+++++..|+++.+...+..+....+. 
T Consensus        83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-  145 (225)
T 2yhc_A           83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-  145 (225)
T ss_dssp             HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence            777777665532                112233455555666777777777777777777776544322221111000 


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011845          233 NLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRS  312 (476)
Q Consensus       233 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  312 (476)
                                      .......+|.++...|++++|+..|+++++..|+++....++..+|.++.+.|++++|+..++.
T Consensus       146 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~  209 (225)
T 2yhc_A          146 ----------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI  209 (225)
T ss_dssp             ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence                            0122355677777777777777777777777777766666677777777777777777777777


Q ss_pred             HHhhCCCcH
Q 011845          313 SLNINSQSY  321 (476)
Q Consensus       313 al~~~p~~~  321 (476)
                      +....|++.
T Consensus       210 l~~~~~~~~  218 (225)
T 2yhc_A          210 IAANSSNTL  218 (225)
T ss_dssp             HHHCCSCCC
T ss_pred             HHhhCCCch
Confidence            776666543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.84  E-value=3.3e-18  Score=152.53  Aligned_cols=198  Identities=13%  Similarity=0.099  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 011845          130 YEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN--NLAARQLFERAVQASPKNRFAWHVWGIFEANMGF-IDKGKKLLK  206 (476)
Q Consensus       130 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~  206 (476)
                      +++++.+++.++..+|.+..+|...+.++...|+  +++++.++.++++.+|.+..+|...+.+....|. ++++++++.
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            4556666666666666666666666666655553  5666666666666666666666666666666665 356666666


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc---------
Q 011845          207 IGHAVNPRDPVLLQSLALLEYKY--------------STANLARKLFRRASEIDPRHQPVWIAWGWMEWKE---------  263 (476)
Q Consensus       207 ~~~~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------  263 (476)
                      +++..+|.+..+|...+.++...              +.++++++++.+++..+|++..+|+.+..++...         
T Consensus       170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~  249 (331)
T 3dss_A          170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVE  249 (331)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchH
Confidence            66666666666666666555554              3467777778888888888777776655555544         


Q ss_pred             --CChhHHHHHHHHHHccCCCChhHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 011845          264 --GNLDTARELYERALSIDSTTESAARCLQAWGVLE---QRVGNLSAARRLFRSSLNINSQSYITWMTWAQL  330 (476)
Q Consensus       264 --g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  330 (476)
                        +.++++++.++++++..|++.-.   +..++.+.   ...|..++...++.+.++++|-...-|..+..-
T Consensus       250 ~~~~l~~el~~~~elle~~pd~~w~---l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~  318 (331)
T 3dss_A          250 KSTVLQSELESCKELQELEPENKWC---LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  318 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCcccchH---HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence              45778888888888888887322   33333222   235777888889999999998877766655443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.84  E-value=4.2e-18  Score=151.84  Aligned_cols=229  Identities=10%  Similarity=0.091  Sum_probs=171.0

Q ss_pred             HcCCHH-HHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCC----------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           58 KLGNIG-KARELFDASTVADKGHIAAWHGWAVLELRQGN----------IKKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        58 ~~g~~~-~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      +.|.+. +|+.++.+++..+|++..+|...+.++...+.          +++++.++..++..+|.+..+|...+.++..
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~  120 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  120 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence            455554 67888888888888888888777777766655          5777888888888888888888888888777


Q ss_pred             hcc--HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc--------
Q 011845          127 ANR--YEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN-NLAARQLFERAVQASPKNRFAWHVWGIFEANM--------  195 (476)
Q Consensus       127 ~g~--~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------  195 (476)
                      .|.  +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|...+.++...        
T Consensus       121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~  200 (331)
T 3dss_A          121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  200 (331)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence            773  7788888888888888888888888887777777 57788888888888888888888777777766        


Q ss_pred             ------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845          196 ------GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY-----------STANLARKLFRRASEIDPRHQPVWIAWGW  258 (476)
Q Consensus       196 ------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  258 (476)
                            +.++++++++.+++..+|++..+|+.+..++...           +.++++++.++++++..|++.-.+..++.
T Consensus       201 ~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~  280 (331)
T 3dss_A          201 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL  280 (331)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence                  4577788888888888888888887665555544           35678888888888888887544444443


Q ss_pred             HHH---HcCChhHHHHHHHHHHccCCCChhH
Q 011845          259 MEW---KEGNLDTARELYERALSIDSTTESA  286 (476)
Q Consensus       259 ~~~---~~g~~~~A~~~~~~a~~~~~~~~~~  286 (476)
                      +..   ..|..++...++.+.++++|.....
T Consensus       281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~  311 (331)
T 3dss_A          281 LMRALDPLLYEKETLQYFSTLKAVDPMRAAY  311 (331)
T ss_dssp             HHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence            322   2567778888888888888876544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.84  E-value=7e-20  Score=163.62  Aligned_cols=222  Identities=17%  Similarity=0.147  Sum_probs=163.2

Q ss_pred             hcCCHHHHHHHHHHhhcc-------CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------CcCcHHHHHHHH
Q 011845           23 KQSKVAEARAIYAKGSQA-------TQGENPYIWQCWAVLENKLGNIGKARELFDASTVA--------DKGHIAAWHGWA   87 (476)
Q Consensus        23 ~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~la   87 (476)
                      ..|++++|+..|+++++.       .+|..+.++..+|.++...|++++|+..|++++..        .|....++..+|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            456777777777777652       33556788999999999999999999999999976        466678899999


Q ss_pred             HHHHHhCCHHHHHHHHHHhhcc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCchhHH
Q 011845           88 VLELRQGNIKKARQLLAKGLKF--------CGGNEYIYQTLALLEAKANRYEQARNLFRQATKC--------NPKSCASW  151 (476)
Q Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~  151 (476)
                      .++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++..        .|....++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999999987        4666789999999999999999999999999998        67777899


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhcCCCCH
Q 011845          152 IAWSQMEMQQENNLAARQLFERAVQA---------SPKNRFAWHVWGIFEANMGFID------KGKKLLKIGHAVNPRDP  216 (476)
Q Consensus       152 ~~la~~~~~~~~~~~A~~~~~~a~~~---------~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~  216 (476)
                      ..+|.++...|++++|+.++++++..         .+.....+..++..+...+...      .+...++......|...
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN  252 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence            99999999999999999999999986         3333445555555554433322      22222222222223333


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845          217 VLLQSLALLEYKYSTANLARKLFRRASE  244 (476)
Q Consensus       217 ~~~~~la~~~~~~~~~~~A~~~~~~~~~  244 (476)
                      .++..+|.++...|++++|+.+|+++++
T Consensus       253 ~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          253 TTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4444455555555555555555554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.83  E-value=7.6e-19  Score=151.35  Aligned_cols=206  Identities=8%  Similarity=-0.103  Sum_probs=150.8

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH---HH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN---PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA---AW   83 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~   83 (476)
                      ++..++.+|..++..|++++|+..|++++... |.+   ..+++.+|.++...|++++|+..|+++++.+|+++.   ++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence            45678888999999999999999999998876 544   468888899999999999999999999988888763   78


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                      +.+|.++...|..                ....+..++..+...|++++|+..|+++++..|+++.++..+..+....+.
T Consensus        82 ~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~  145 (225)
T 2yhc_A           82 YMRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR  145 (225)
T ss_dssp             HHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence            8888888776532                112344566667778899999999999999999887665433222211111


Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP---VLLQSLALLEYKYSTANLARKLFR  240 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~  240 (476)
                      .                 ......+|.++...|++++|+..|+++++..|+++   .++..+|.++...|++++|+..++
T Consensus       146 ~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~  208 (225)
T 2yhc_A          146 L-----------------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK  208 (225)
T ss_dssp             H-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             H-----------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            1                 12335678888888889999999988888888875   568888889999999999988888


Q ss_pred             HHhccCCCC
Q 011845          241 RASEIDPRH  249 (476)
Q Consensus       241 ~~~~~~~~~  249 (476)
                      .+....|++
T Consensus       209 ~l~~~~~~~  217 (225)
T 2yhc_A          209 IIAANSSNT  217 (225)
T ss_dssp             HHHHCCSCC
T ss_pred             HHHhhCCCc
Confidence            888877765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.83  E-value=2.6e-18  Score=153.76  Aligned_cols=185  Identities=12%  Similarity=0.124  Sum_probs=109.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG-NIGKARELFDASTVADKGHIAAWHGWAVLE   90 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   90 (476)
                      .++..+..+....+..++|+..+.+++..+ |.+..+|+..+.++...| .+++++..++.++..+|++..+|...+.++
T Consensus        55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL  133 (349)
T 3q7a_A           55 DAMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL  133 (349)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            334444444444445556666666666665 666666666666666666 366666666666666666666666666666


Q ss_pred             HHh-C-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH--------HHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845           91 LRQ-G-NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE--------QARNLFRQATKCNPKSCASWIAWSQMEMQ  160 (476)
Q Consensus        91 ~~~-~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~la~~~~~  160 (476)
                      ... + ++++++.++.++++.+|.+..+|...+.+....|.++        +++++++++++.+|.+..+|...+.++..
T Consensus       134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS  213 (349)
T ss_dssp             HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred             HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            655 5 5666666666666666666666666666666555555        55666666666666666666666555555


Q ss_pred             hcc-------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 011845          161 QEN-------NLAARQLFERAVQASPKNRFAWHVWGIFEANMGF  197 (476)
Q Consensus       161 ~~~-------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  197 (476)
                      .+.       ++++++++.+++..+|++..+|+.+..++...|+
T Consensus       214 l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          214 RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence            554       4555555555555555555555555555544443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.82  E-value=2.5e-19  Score=148.00  Aligned_cols=167  Identities=16%  Similarity=0.022  Sum_probs=87.7

Q ss_pred             CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHH
Q 011845            7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGW   86 (476)
Q Consensus         7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l   86 (476)
                      +|...+.++.+|..+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++..+| ++..+..+
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~   79 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLI   79 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHH
Confidence            34445555566666666666666666666665555 55566666666666666666666666666655555 44444333


Q ss_pred             HHHHH-HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHhcc
Q 011845           87 AVLEL-RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS--CASWIAWSQMEMQQEN  163 (476)
Q Consensus        87 a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~  163 (476)
                      +.+.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.  ..++..++.++...|+
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~  159 (176)
T 2r5s_A           80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ  159 (176)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred             HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence            33221 11222234555555555555555555555555555555555555555555555543  3355555555555555


Q ss_pred             HHHHHHHHHHHH
Q 011845          164 NLAARQLFERAV  175 (476)
Q Consensus       164 ~~~A~~~~~~a~  175 (476)
                      .++|+..|++++
T Consensus       160 ~~~A~~~y~~al  171 (176)
T 2r5s_A          160 GNAIASKYRRQL  171 (176)
T ss_dssp             SCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHH
Confidence            555555555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.81  E-value=1.1e-17  Score=149.64  Aligned_cols=254  Identities=9%  Similarity=0.033  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 011845           49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG-NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA  127 (476)
Q Consensus        49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  127 (476)
                      +..+..+....+..++|+.++.+++..+|++..+|...+.++...| .+++++.++.+++..+|++..+|...+.++...
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l  136 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI  136 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            3333344444455566777777777777777777777777777776 477777777777777777777777777776666


Q ss_pred             -c-cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHH--------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 011845          128 -N-RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL--------AARQLFERAVQASPKNRFAWHVWGIFEANMGF  197 (476)
Q Consensus       128 -g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  197 (476)
                       + ++++++.++.++++.+|.+..+|...+.++...|.++        +++..++++++.+|.+..+|...+.++...+.
T Consensus       137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence             5 6667777777777777777777777766666666655        55666666666666665566665555555544


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhH---------
Q 011845          198 IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDT---------  268 (476)
Q Consensus       198 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---------  268 (476)
                      ..              ..             ...++++++++.+++..+|++..+|+.+..++...|+...         
T Consensus       217 ~~--------------~~-------------~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~  269 (349)
T 3q7a_A          217 AE--------------TS-------------SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY  269 (349)
T ss_dssp             CC--------------CC-------------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred             cc--------------cc-------------hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccc
Confidence            10              00             0003455555555555555555555555545444443200         


Q ss_pred             -------H-HHHHHHHHccCCCC------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhCCCcHHHHHHHHH
Q 011845          269 -------A-RELYERALSIDSTT------ESAARCLQAWGVLEQRVGNLSAARRLFRSSL-NINSQSYITWMTWAQ  329 (476)
Q Consensus       269 -------A-~~~~~~a~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~  329 (476)
                             . -...+.+.+.....      .....++.-++.+|...|+.++|.++|+... +.+|-....|...+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence                   0 01111111111110      1113345556777777777777777777765 456666666555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.81  E-value=6.5e-19  Score=145.50  Aligned_cols=166  Identities=11%  Similarity=-0.079  Sum_probs=117.0

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845           44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL  123 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~  123 (476)
                      .....++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++...| ++..+..++.+
T Consensus         4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~   82 (176)
T 2r5s_A            4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL   82 (176)
T ss_dssp             --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence            33455677777788888888888888888888888888888888888888888888888888887777 66655554444


Q ss_pred             HH-HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHH
Q 011845          124 EA-KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN--RFAWHVWGIFEANMGFIDK  200 (476)
Q Consensus       124 ~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~  200 (476)
                      .. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.  ..++..++.++...|+.++
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence            22 22233346777777777777777777777777777777777777777777777654  4467777777777777777


Q ss_pred             HHHHHHHHHh
Q 011845          201 GKKLLKIGHA  210 (476)
Q Consensus       201 A~~~~~~~~~  210 (476)
                      |+..|++++.
T Consensus       163 A~~~y~~al~  172 (176)
T 2r5s_A          163 IASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.80  E-value=2.3e-18  Score=153.97  Aligned_cols=167  Identities=11%  Similarity=-0.079  Sum_probs=94.7

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845           43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL  122 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~  122 (476)
                      |.+...+..+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+........+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555544444444444


Q ss_pred             HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHH
Q 011845          123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN--RFAWHVWGIFEANMGFIDK  200 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~  200 (476)
                      .+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++  ..++..++.++...|+.++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            45555555555555555555555555555555555555555555555555555555555  4555555555555555555


Q ss_pred             HHHHHHHHH
Q 011845          201 GKKLLKIGH  209 (476)
Q Consensus       201 A~~~~~~~~  209 (476)
                      |...|++++
T Consensus       274 a~~~~r~al  282 (287)
T 3qou_A          274 LASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.80  E-value=6.2e-19  Score=136.33  Aligned_cols=119  Identities=18%  Similarity=0.097  Sum_probs=76.7

Q ss_pred             cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845            4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus         4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      ..++|+.++.+..+|..++..|+|++|+..|+++++.. |.++.+|..+|.++..+|++++|+..|+++++.+|+++.+|
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence            34566666666666666666666666666666666665 66666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL  123 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~  123 (476)
                      +.+|.++...|++++|+..|+++++++|++..++..++.+
T Consensus        85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            6666666666666666666666666666666666555544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.80  E-value=3.9e-18  Score=152.51  Aligned_cols=167  Identities=16%  Similarity=0.077  Sum_probs=109.5

Q ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845          111 GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI  190 (476)
Q Consensus       111 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  190 (476)
                      |.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            55666666666666666666666666666666666666666666666666666666666666666666655555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCChhH
Q 011845          191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH--QPVWIAWGWMEWKEGNLDT  268 (476)
Q Consensus       191 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~  268 (476)
                      .+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++  ..++..++.++...|+.++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            56666666666666666666666666666666666666666666666666666666665  5666666666666666666


Q ss_pred             HHHHHHHHH
Q 011845          269 ARELYERAL  277 (476)
Q Consensus       269 A~~~~~~a~  277 (476)
                      |...|++++
T Consensus       274 a~~~~r~al  282 (287)
T 3qou_A          274 LASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=2e-18  Score=133.49  Aligned_cols=117  Identities=15%  Similarity=0.084  Sum_probs=65.2

Q ss_pred             hcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH
Q 011845           74 VADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA  153 (476)
Q Consensus        74 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  153 (476)
                      .++|+....+..+|..+++.|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.+|+.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI  190 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  190 (476)
                      +|.++...|++++|+..|+++++++|++..++..++.
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~  123 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN  123 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence            5555555555555555555555555555555554444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.78  E-value=2.4e-18  Score=155.65  Aligned_cols=183  Identities=11%  Similarity=0.051  Sum_probs=116.3

Q ss_pred             HHHHhccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHH
Q 011845          157 MEMQQENNLAARQLFERAVQASPK------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--D----PVLLQSLAL  224 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~  224 (476)
                      +|...|++++|+..|.+++.+.+.      ...++..+|.+|...|++++|+.+|++++.+.+.  +    ..++..+|.
T Consensus        45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  124 (307)
T 2ifu_A           45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK  124 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444445555555555554444321      1234555566666666666666666666554321  1    245667777


Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh---hHHHHHHHHHH
Q 011845          225 LEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE---SAARCLQAWGV  295 (476)
Q Consensus       225 ~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~l~~  295 (476)
                      ++.. |++++|+.+|++++.+.+..      ..++.++|.++...|++++|+.+|++++.+.|...   .....+..+|.
T Consensus       125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~  203 (307)
T 2ifu_A          125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL  203 (307)
T ss_dssp             HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence            7777 77777777777777765432      46778888888888888888888888888754432   23346777888


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhCCCcHH-----HHHHHHHHHHHcCChHHHHH
Q 011845          296 LEQRVGNLSAARRLFRSSLNINSQSYI-----TWMTWAQLEEDQGNSVRAEE  342 (476)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~  342 (476)
                      ++...|++++|+.+|++++ .+|....     ....++..+ ..|+.+.+..
T Consensus       204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            8888899999999999999 8886542     233444443 4566554433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.78  E-value=4.6e-18  Score=153.80  Aligned_cols=184  Identities=13%  Similarity=0.051  Sum_probs=116.9

Q ss_pred             HHHHHhccHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC------cHHHHHHHH
Q 011845          122 LLEAKANRYEQARNLFRQATKCNPKS------CASWIAWSQMEMQQENNLAARQLFERAVQASPK------NRFAWHVWG  189 (476)
Q Consensus       122 ~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~  189 (476)
                      .+|...|++++|+..|.+++.+.+..      ..++..+|.+|...|++++|+.+|++++.+.+.      ...++..+|
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  123 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG  123 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444455555555555544443211      234555566666666666666666666554321      134566677


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHH
Q 011845          190 IFEANMGFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWG  257 (476)
Q Consensus       190 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~  257 (476)
                      .+|.. |++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++.+.|..      ...+..+|
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g  202 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV  202 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            77766 77777777777777665432      4567788888888888888888888888775533      24677888


Q ss_pred             HHHHHcCChhHHHHHHHHHHccCCCChhH--HHHHHHHHHHHHHhCCHHHHHH
Q 011845          258 WMEWKEGNLDTARELYERALSIDSTTESA--ARCLQAWGVLEQRVGNLSAARR  308 (476)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~  308 (476)
                      .++...|++++|+.+|++++ ..|.....  ...+..++..+ ..|+.+.+..
T Consensus       203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            99999999999999999999 88876432  22344445444 4566544433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.78  E-value=1.1e-17  Score=164.95  Aligned_cols=164  Identities=16%  Similarity=0.119  Sum_probs=94.3

Q ss_pred             CCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHH
Q 011845           60 GNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQ  139 (476)
Q Consensus        60 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  139 (476)
                      |++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   82 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ   82 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCH
Q 011845          140 ATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM---GFIDKGKKLLKIGHAVNPRDP  216 (476)
Q Consensus       140 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~  216 (476)
                      +++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.++...   |++++|...++++++.+|.+.
T Consensus        83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A           83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence            66666666666666666666666666666666666666666666666666666666   666666666666666666655


Q ss_pred             HHHHHHH
Q 011845          217 VLLQSLA  223 (476)
Q Consensus       217 ~~~~~la  223 (476)
                      ..+..++
T Consensus       163 ~~~~~l~  169 (568)
T 2vsy_A          163 EPFAFLS  169 (568)
T ss_dssp             CHHHHTT
T ss_pred             ChHHHhC
Confidence            5444443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.77  E-value=9.2e-17  Score=140.87  Aligned_cols=257  Identities=10%  Similarity=-0.025  Sum_probs=193.0

Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845            8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA   87 (476)
Q Consensus         8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la   87 (476)
                      ..++..++.+ +-.+-.|+|..++.-..+.   .+.........+.+++..+|++...       .. .+....+...++
T Consensus        11 ~~~~~~lf~i-kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la   78 (310)
T 3mv2_B           11 SQDPMDYFNI-KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYV   78 (310)
T ss_dssp             ----CCTHHH-HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHH
T ss_pred             CCCcHHHHHH-HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHH
Confidence            3455556655 4555689999999855443   2223345666677888889988742       11 222233444555


Q ss_pred             HHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHhccHH
Q 011845           88 VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNP--KSCASWIAWSQMEMQQENNL  165 (476)
Q Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~  165 (476)
                      ..+.  +.   |+..+++.+...+.+...+..+|.++...|++++|+.++.+.+..+|  .+.+++..++.++...|+.+
T Consensus        79 ~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d  153 (310)
T 3mv2_B           79 QFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS  153 (310)
T ss_dssp             HHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH
Confidence            5442  22   88999999887666677778999999999999999999999999887  78889999999999999999


Q ss_pred             HHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHH
Q 011845          166 AARQLFERAVQASPK------NRFAWHVWGIFEANMG--FIDKGKKLLKIGHAVNPR--DPVLLQSLALLEYKYSTANLA  235 (476)
Q Consensus       166 ~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A  235 (476)
                      .|.+.++++.+.+|+      ...+...-+.+....|  ++.+|..+|+++....|+  .+..+++   ++..+|++++|
T Consensus       154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA  230 (310)
T 3mv2_B          154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA  230 (310)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred             HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence            999999999999883      2233333344466556  899999999999888886  2334444   88999999999


Q ss_pred             HHHHHHHhcc----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845          236 RKLFRRASEI----------DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA  286 (476)
Q Consensus       236 ~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  286 (476)
                      ...++.+++.          +|+++.++.+++.+....|+  +|.++++++.+..|+++.+
T Consensus       231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence            9999988776          48899999899888888887  8899999999999999765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.77  E-value=1.1e-17  Score=165.07  Aligned_cols=165  Identities=12%  Similarity=0.073  Sum_probs=138.4

Q ss_pred             hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHH
Q 011845           93 QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFE  172 (476)
Q Consensus        93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  172 (476)
                      .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCC
Q 011845          173 RAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY---STANLARKLFRRASEIDPRH  249 (476)
Q Consensus       173 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~  249 (476)
                      ++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..++.++...   |++++|+..++++++.+|.+
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999   99999999999999999988


Q ss_pred             HHHHHHHH
Q 011845          250 QPVWIAWG  257 (476)
Q Consensus       250 ~~~~~~l~  257 (476)
                      ...+..++
T Consensus       162 ~~~~~~l~  169 (568)
T 2vsy_A          162 VEPFAFLS  169 (568)
T ss_dssp             SCHHHHTT
T ss_pred             cChHHHhC
Confidence            77777666

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.76  E-value=4.2e-18  Score=135.46  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=89.3

Q ss_pred             HHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845           67 ELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK  146 (476)
Q Consensus        67 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  146 (476)
                      ..+++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            44566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845          147 SCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR  182 (476)
Q Consensus       147 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  182 (476)
                      ++.+|+.+|.++...|++++|+..|+++++..|+.+
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            777777777777777777777777777777777654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.76  E-value=8.1e-18  Score=145.65  Aligned_cols=196  Identities=16%  Similarity=0.093  Sum_probs=91.2

Q ss_pred             cCCHHHHHHHHHHHhhcCcCcHHHHHHH-------HHHHHHhCCHHHHHHHHHHhhccCCCc------------------
Q 011845           59 LGNIGKARELFDASTVADKGHIAAWHGW-------AVLELRQGNIKKARQLLAKGLKFCGGN------------------  113 (476)
Q Consensus        59 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~p~~------------------  113 (476)
                      .+++..|...|.+++..+|..+++|..+       +.++...++..+++..+++.+.+.|..                  
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence            4444444444444444444444444444       444444444444444444444433321                  


Q ss_pred             ---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc--HHHHHHH
Q 011845          114 ---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN--RFAWHVW  188 (476)
Q Consensus       114 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l  188 (476)
                         ..+...++.++...|++++|.+.|..++...|++. +.+.+|.++.+.+++++|+..|+.+....+..  ..+++.+
T Consensus        99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L  177 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH  177 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence               12233344445555555555555555444444444 44455555555555555555554443321110  2244555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 011845          189 GIFEANMGFIDKGKKLLKIGHAVN--PR-DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAW  256 (476)
Q Consensus       189 ~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  256 (476)
                      |.++..+|++++|+..|++++...  |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++..|
T Consensus       178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            555555555555555555554322  22 2334555555555555555555555555555555 4444433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.76  E-value=7.4e-18  Score=145.87  Aligned_cols=201  Identities=13%  Similarity=0.036  Sum_probs=153.1

Q ss_pred             HhccHHHHHHHHHHHHhcCCCchhHHHHH-------HHHHHHhccHHHHHHHHHHHHHcCCCc-----------------
Q 011845          126 KANRYEQARNLFRQATKCNPKSCASWIAW-------SQMEMQQENNLAARQLFERAVQASPKN-----------------  181 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------  181 (476)
                      ..+++..|...|.+++..+|+..++|..+       +.++...++..+++..+.+.+.+.|..                 
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            46777777777777777777777777777       677777777777777777777765543                 


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--HHHHHH
Q 011845          182 ----RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH--QPVWIA  255 (476)
Q Consensus       182 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~  255 (476)
                          ..+...++.++...|++++|.+.|..++...|.+. ..+.+|.++...+++++|+..|+.+....+..  ..+++.
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~  176 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA  176 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence                24455678888888888888888888888888777 88888888888888888888888776643221  357888


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHccCCCChh-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 011845          256 WGWMEWKEGNLDTARELYERALSIDSTTES-AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQ  329 (476)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  329 (476)
                      +|.++...|++++|+.+|++++... ..+. ....++.+|.++.++|+.++|...|++++..+|+ ..++..|..
T Consensus       177 LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          177 HGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            8999999999999999999888543 2121 3446778899999999999999999999999988 776655543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.76  E-value=3.2e-18  Score=136.09  Aligned_cols=114  Identities=11%  Similarity=-0.003  Sum_probs=68.6

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 011845          170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH  249 (476)
Q Consensus       170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  249 (476)
                      .+++++.++|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|+++++++|++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            34445555555556666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845          250 QPVWIAWGWMEWKEGNLDTARELYERALSIDSTT  283 (476)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  283 (476)
                      +.+|+++|.++...|++++|+..|++++++.|+.
T Consensus       104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            6666666666666666666666666666665554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.75  E-value=1.3e-17  Score=148.53  Aligned_cols=194  Identities=9%  Similarity=-0.041  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA  125 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  125 (476)
                      +..+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|++..+++.+|.++.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 011845          126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLL  205 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  205 (476)
                      ..|++++|+..|+++++.+|++...+...+.....   ..++...........|.+..+...++.++  .|++++|++.+
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~  158 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC  158 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred             HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence            44444444444444444444332111111111111   11111111122223333333333333332  34555555555


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhc
Q 011845          206 KIGHAVNPRDPVLLQSLALLEYKY-STANLARKLFRRASE  244 (476)
Q Consensus       206 ~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~  244 (476)
                      +++++..|++......++.++... +.+++|..+|.++.+
T Consensus       159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            555555554444444444444433 344555555555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.74  E-value=1.9e-17  Score=147.40  Aligned_cols=198  Identities=15%  Similarity=0.028  Sum_probs=115.6

Q ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845           77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ  156 (476)
Q Consensus        77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  156 (476)
                      |.+...+..+|..+...|++++|+..|++++..+|.+..++..+|.+|...|++++|+..++++++.+|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34455666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011845          157 MEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLAR  236 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  236 (476)
                      ++...|++++|+..|+++++.+|++...+...+....   ...++...........|.++.+...++.++  .|++++|+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~  155 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL  155 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence            6666666666666666666666544211111111111   111122222222334455555555555543  46666666


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHcc
Q 011845          237 KLFRRASEIDPRHQPVWIAWGWMEWKE-GNLDTARELYERALSI  279 (476)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~  279 (476)
                      +.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            666666666666665555555555544 5566666666666553

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.74  E-value=2.4e-14  Score=137.21  Aligned_cols=361  Identities=11%  Similarity=0.085  Sum_probs=255.9

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhc---CcCcHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN-IGKARELFDASTVA---DKGHIAAWHG   85 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~---~p~~~~~~~~   85 (476)
                      .+...+..+...+-.|+++.+..+|++++... | +..+|..+.....+.++ .+.....|+.++..   +|.+...|..
T Consensus        13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~-p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~   90 (493)
T 2uy1_A           13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKS-Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE   90 (493)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC-C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccC-C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence            44455555656666699999999999999976 5 88899999888877774 45677888888863   6778899998


Q ss_pred             HHHHHH----HhCCHHHHHHHHHHhhccCCCcH-HHHHHHHHHH-------------HHhccHHHHHHHHHHHHhcCCC-
Q 011845           86 WAVLEL----RQGNIKKARQLLAKGLKFCGGNE-YIYQTLALLE-------------AKANRYEQARNLFRQATKCNPK-  146 (476)
Q Consensus        86 la~~~~----~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~-------------~~~g~~~~A~~~~~~~~~~~p~-  146 (476)
                      .+..+.    .+|+.+.+..+|++++..-+.+. ..|......-             ...+.+..|...|+.+....+. 
T Consensus        91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~  170 (493)
T 2uy1_A           91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW  170 (493)
T ss_dssp             HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence            888765    45778899999999998532222 2232222211             1223455566666666554332 


Q ss_pred             chhHHHHHHHHHHHhc-------cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 011845          147 SCASWIAWSQMEMQQE-------NNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL  219 (476)
Q Consensus       147 ~~~~~~~la~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  219 (476)
                      +...|..+.......+       ..+.....|++++...|..+.+|..++..+...|+.+.|..+|++++.. |.+...+
T Consensus       171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~  249 (493)
T 2uy1_A          171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS  249 (493)
T ss_dssp             SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH
T ss_pred             cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH
Confidence            4446766655543321       1355778999999999999999999999999999999999999999999 9988777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHH
Q 011845          220 QSLALLEYKYSTANLARKLFRRASEID----------PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARC  289 (476)
Q Consensus       220 ~~la~~~~~~~~~~~A~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  289 (476)
                      ..++... ..+   +....+.......          +....+|...+....+.++.+.|...|+++ . .|...  ..+
T Consensus       250 ~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~--~~v  321 (493)
T 2uy1_A          250 LYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVG--PHV  321 (493)
T ss_dssp             HHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCC--HHH
T ss_pred             HHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCC--hHH
Confidence            7655541 111   1111111111101          112367888888888888999999999999 4 34321  335


Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccc
Q 011845          290 LQAWGVLEQRVG-NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDII  368 (476)
Q Consensus       290 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~  368 (476)
                      +...+.+....+ +.+.|..+|+.+++..|+++..|..++.++...|+.+.|..+++++.. ...++......-...|+.
T Consensus       322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~  400 (493)
T 2uy1_A          322 FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSM  400 (493)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCH
Confidence            566677766666 699999999999999999999999999999999999999999998732 334444444445566898


Q ss_pred             hHHHHHHHHHhccc
Q 011845          369 DPALDRIKQLLNLE  382 (476)
Q Consensus       369 ~~A~~~~~~al~~~  382 (476)
                      +.+...++++++.-
T Consensus       401 ~~~r~v~~~~~~~~  414 (493)
T 2uy1_A          401 ELFRELVDQKMDAI  414 (493)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888899888643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.73  E-value=3.7e-16  Score=132.96  Aligned_cols=174  Identities=18%  Similarity=0.147  Sum_probs=102.8

Q ss_pred             HHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC----CHHHHHHHHH
Q 011845           29 EARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG----NIKKARQLLA  104 (476)
Q Consensus        29 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~  104 (476)
                      +|+..|+++.+.   .++.+++.+|.++...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            455566666543   35666666666666666666666666666543  456666666666665 4    5666666666


Q ss_pred             HhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHH----hccHHHHHHHHHHH
Q 011845          105 KGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKCNP--KSCASWIAWSQMEMQ----QENNLAARQLFERA  174 (476)
Q Consensus       105 ~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~----~~~~~~A~~~~~~a  174 (476)
                      ++.+  +.++.+++.+|.+|..    .+++++|+.+|+++.+..+  .++.+++.+|.+|..    .+++++|+.+|+++
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            6643  3456666666666655    5566666666666666555  235566666666665    55566666666666


Q ss_pred             HHcCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhc
Q 011845          175 VQASPKNRFAWHVWGIFEANM-G-----FIDKGKKLLKIGHAV  211 (476)
Q Consensus       175 ~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~  211 (476)
                      ++. +.++.+++.+|.+|... |     ++++|+.+|+++.+.
T Consensus       156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            555 44444555666655542 2     556666666655554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.73  E-value=1.2e-18  Score=159.40  Aligned_cols=151  Identities=8%  Similarity=0.057  Sum_probs=88.5

Q ss_pred             hccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHH
Q 011845          127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN---------------RFAWHVWGIF  191 (476)
Q Consensus       127 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~  191 (476)
                      ++++++|+..+++++...|....++..+|.++...|++++|+..|++++...|.+               ..++.++|.+
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555556666666666666666666666666665555               4555666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHH-H
Q 011845          192 EANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTA-R  270 (476)
Q Consensus       192 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~  270 (476)
                      +...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|++++| .
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666666666666666666666666666666665555 3


Q ss_pred             HHHHHHH
Q 011845          271 ELYERAL  277 (476)
Q Consensus       271 ~~~~~a~  277 (476)
                      ..|++++
T Consensus       286 ~~~~~~~  292 (336)
T 1p5q_A          286 KLYANMF  292 (336)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.72  E-value=7.3e-19  Score=160.82  Aligned_cols=183  Identities=14%  Similarity=0.060  Sum_probs=119.2

Q ss_pred             cCCHHHHHHHHHH----hhccCCCCChHHHHHHHHHHH------------HcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845           24 QSKVAEARAIYAK----GSQATQGENPYIWQCWAVLEN------------KLGNIGKARELFDASTVADKGHIAAWHGWA   87 (476)
Q Consensus        24 ~g~~~~A~~~~~~----~~~~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~la   87 (476)
                      .+.+++|+..+..    ++... |..  ++...|....            .++++++|+..|++++..+|....++..+|
T Consensus        78 ~~~~e~al~~~~~Ge~~~l~i~-p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g  154 (336)
T 1p5q_A           78 PYGLERAIQRMEKGEHSIVYLK-PSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG  154 (336)
T ss_dssp             CHHHHHHHTTCCTTCEEEEEEC-TTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhcCCCCCeEEEEEC-Ccc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence            4567788887777    66654 443  2333332221            345666777777777777777777777788


Q ss_pred             HHHHHhCCHHHHHHHHHHhhccCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHH
Q 011845           88 VLELRQGNIKKARQLLAKGLKFCGGN---------------EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI  152 (476)
Q Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  152 (476)
                      .++...|++++|+..|++++...|.+               ..++..+|.++...|++++|+..|+++++++|+++.+++
T Consensus       155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  234 (336)
T 1p5q_A          155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS  234 (336)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            88888888888888888887777776               456666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 011845          153 AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKG-KKLLKIGH  209 (476)
Q Consensus       153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~  209 (476)
                      .+|.++...|++++|+..|+++++++|++..++..++.++...|++++| ...|++++
T Consensus       235 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666665 33444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.72  E-value=4.8e-16  Score=132.22  Aligned_cols=173  Identities=16%  Similarity=0.054  Sum_probs=86.2

Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc----cHHHHHHHHHHH
Q 011845           99 ARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE----NNLAARQLFERA  174 (476)
Q Consensus        99 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~a  174 (476)
                      |+..|+++.+.  .++.+++.+|.+|...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+++
T Consensus         5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A            5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            33444444432  34444444444444444444444444444432  244444455554444 3    455555555554


Q ss_pred             HHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhc
Q 011845          175 VQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNP--RDPVLLQSLALLEYK----YSTANLARKLFRRASE  244 (476)
Q Consensus       175 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~  244 (476)
                      .+  +.++.+++.+|.+|..    .+++++|+.+|+++.+..+  .++.+++.+|.+|..    .+++++|+.+|+++++
T Consensus        80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            32  2344455555555544    4555555555555555444  225555555555555    5555555555555555


Q ss_pred             cCCCCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHcc
Q 011845          245 IDPRHQPVWIAWGWMEWKE-G-----NLDTARELYERALSI  279 (476)
Q Consensus       245 ~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~a~~~  279 (476)
                      . |.++.+++.+|.+|... |     ++++|+.+|+++.+.
T Consensus       158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            5 34445555555555442 2     555666666655554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.71  E-value=3.9e-17  Score=130.20  Aligned_cols=116  Identities=8%  Similarity=-0.024  Sum_probs=73.6

Q ss_pred             HHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845           67 ELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK  146 (476)
Q Consensus        67 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  146 (476)
                      ..|++++..+|.+..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|+
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845          147 SCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR  182 (476)
Q Consensus       147 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  182 (476)
                      ++.+++.+|.++...|++++|+..|+++++..|+++
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            666666666666666666666666666666655544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.71  E-value=8.3e-17  Score=128.28  Aligned_cols=114  Identities=10%  Similarity=-0.003  Sum_probs=59.2

Q ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 011845          171 FERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ  250 (476)
Q Consensus       171 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  250 (476)
                      |++++..+|++...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   89 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP   89 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            44444445555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845          251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTE  284 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  284 (476)
                      .+++.+|.++...|++++|+..|++++++.|+++
T Consensus        90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           90 RFPFHAAECLLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5555555555555555555555555555544443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.71  E-value=9.5e-16  Score=120.00  Aligned_cols=131  Identities=19%  Similarity=0.316  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 011845           49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN  128 (476)
Q Consensus        49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g  128 (476)
                      ++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG   83 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence            33344444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Q 011845          129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP  179 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  179 (476)
                      ++++|+..+++++...|.+..++..+|.++...|++++|...+++++..+|
T Consensus        84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            444444444444444444444444444444444444444444444444333

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.70  E-value=9.6e-16  Score=134.42  Aligned_cols=248  Identities=9%  Similarity=-0.032  Sum_probs=178.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGH-IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE  131 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  131 (476)
                      .+-.+-.|+|..++.-..+   ..|.+ ....+.+.+++..+|++...       .. .+....+...++..+.  +.  
T Consensus        20 ikn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~--~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD--TK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT--TT--
T ss_pred             HHHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc--cc--
Confidence            3445678999998885443   33333 34556677888888887642       11 2223334445555442  22  


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845          132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP--KNRFAWHVWGIFEANMGFIDKGKKLLKIGH  209 (476)
Q Consensus       132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  209 (476)
                       |+..+++.+...+.+..++..+|.++...|++++|+.++.+.+..+|  .+.+++...+.++...|+.+.|.+.++++.
T Consensus        85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             78888888877655666778889999999999999999999988886  788888899999999999999999999988


Q ss_pred             hcCCC------CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845          210 AVNPR------DPVLLQSLALLEYKYS--TANLARKLFRRASEIDPR--HQPVWIAWGWMEWKEGNLDTARELYERALSI  279 (476)
Q Consensus       210 ~~~~~------~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  279 (476)
                      +.+|+      ...+...-+++....|  ++.+|..+|+++.+..|+  .+..+++   ++..+|++++|...++.+++.
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence            88873      2223333354455555  888999999998888876  2333333   788889999999999877776


Q ss_pred             C----------CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH
Q 011845          280 D----------STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITW  324 (476)
Q Consensus       280 ~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  324 (476)
                      .          |++   ..++.+++.+....|+  +|.++++++.+.+|+++.+.
T Consensus       241 ~p~~~~k~~~~p~~---~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          241 YYSVEQKENAVLYK---PTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HHHTTTCHHHHSSH---HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             cccccccccCCCCC---HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence            3          555   4457777778888887  88889999999999888653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.70  E-value=1.6e-15  Score=118.62  Aligned_cols=132  Identities=19%  Similarity=0.317  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      +++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011845          162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNP  213 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  213 (476)
                      |++++|+..+++++...|.+..++..++.++...|++++|...+++++...|
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            5555555555555555555555555555555555555555555555554444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=1.6e-16  Score=125.89  Aligned_cols=115  Identities=10%  Similarity=0.007  Sum_probs=58.0

Q ss_pred             HHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 011845           68 LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS  147 (476)
Q Consensus        68 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  147 (476)
                      .|++++..+|++...++.+|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|++
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            34444444555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845          148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNR  182 (476)
Q Consensus       148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  182 (476)
                      +.+++.+|.++...|++++|+..|++++...|+++
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            55555555555555555555555555555544443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=2.4e-16  Score=124.90  Aligned_cols=127  Identities=13%  Similarity=0.002  Sum_probs=80.3

Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC
Q 011845           32 AIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG  111 (476)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  111 (476)
                      ..|++++... |.+...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++..+|
T Consensus         5 ~~l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            5 GTLAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             ----CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3455555555 556666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845          112 GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM  159 (476)
Q Consensus       112 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  159 (476)
                      +++.+++.+|.++...|++++|+..|+++++..|+++........+..
T Consensus        84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  131 (142)
T 2xcb_A           84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA  131 (142)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence            666666666666666666666666666666666665554444444333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=3.7e-16  Score=152.03  Aligned_cols=186  Identities=15%  Similarity=0.142  Sum_probs=147.4

Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc--cH
Q 011845           97 KKARQLLAKGLKFCGGNEYIYQTLALLEAKANR----------YEQARNLFRQATKCNPKSCASWIAWSQMEMQQE--NN  164 (476)
Q Consensus        97 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--~~  164 (476)
                      ++|+..+.+++..+|++..+|...+.++...|+          +++++..++++++.+|++..+|...+.++...|  ++
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence            455666666666666666666666666666666          777888888888888888888888888877777  56


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------
Q 011845          165 LAARQLFERAVQASPKNRFAWHVWGIFEANMG-FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY--------------  229 (476)
Q Consensus       165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------  229 (476)
                      ++++..+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|...+.++...              
T Consensus       126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~  205 (567)
T 1dce_A          126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  205 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred             HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence            88888888888888888888888888887777 778888888888888888888888888777764              


Q ss_pred             CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhH------------HHHHHHHHHccCCC
Q 011845          230 STANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDT------------ARELYERALSIDST  282 (476)
Q Consensus       230 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~a~~~~~~  282 (476)
                      +.++++++++.+++..+|++..+|+.++.++...+++++            |+..|.+++.++|.
T Consensus       206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~  270 (567)
T 1dce_A          206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR  270 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred             HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence            567999999999999999999999999999999888766            56667777777765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.67  E-value=2.4e-13  Score=130.27  Aligned_cols=334  Identities=14%  Similarity=0.125  Sum_probs=239.1

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCC-HHHHHHHHHHhhccC--CCCChHHHHHHHHHHH----HcCCHHHHHHHHHHHhh
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSK-VAEARAIYAKGSQAT--QGENPYIWQCWAVLEN----KLGNIGKARELFDASTV   74 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~~~~   74 (476)
                      +++...| +.++|........+.+. .+.....|+.++...  .+.+..+|..++..+.    ..|+.+.+..+|++++.
T Consensus        39 ral~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~  117 (493)
T 2uy1_A           39 RCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ  117 (493)
T ss_dssp             HHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred             HHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence            4566667 88899988888877764 456778889888642  2567899998887754    35678999999999998


Q ss_pred             cCcCcH-HHHHHHHHHHH-------------HhCCHHHHHHHHHHhhccCCC-cHHHHHHHHHHHHHh--c-----cHHH
Q 011845           75 ADKGHI-AAWHGWAVLEL-------------RQGNIKKARQLLAKGLKFCGG-NEYIYQTLALLEAKA--N-----RYEQ  132 (476)
Q Consensus        75 ~~p~~~-~~~~~la~~~~-------------~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~--g-----~~~~  132 (476)
                      ..+.+. ..|........             ..+.+..|...++.+....+. +...|..+...-...  |     ....
T Consensus       118 ~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~R  197 (493)
T 2uy1_A          118 TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESR  197 (493)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred             ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHH
Confidence            643333 33333322221             122344455555555543332 344665555543321  1     1456


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845          133 ARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN  212 (476)
Q Consensus       133 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  212 (476)
                      ....|++++...|..+..|..++..+...|+.++|..+|++++.. |.+...|...+... ..   ++....+.......
T Consensus       198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~---~~~~~~l~~~~~~~  272 (493)
T 2uy1_A          198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DE---EAVYGDLKRKYSMG  272 (493)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TC---THHHHHHHHHTC--
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-ch---hHHHHHHHHHHHhh
Confidence            778999999999999999999999999999999999999999999 99887777655542 11   11111111111101


Q ss_pred             ----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHccCC
Q 011845          213 ----------PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG-NLDTARELYERALSIDS  281 (476)
Q Consensus       213 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~  281 (476)
                                +....+|..++....+.+..+.|..+|+++ ...+....+|...+.+....+ +.+.|..+|+.+++..|
T Consensus       273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence                      112357888888888888999999999999 433345677877777777666 69999999999999988


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          282 TTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       282 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      +.+..   +..++......|+.+.|...|+++    +.....|..+..+....|+.+.+..++++...
T Consensus       352 ~~~~~---~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          352 DSTLL---KEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             TCHHH---HHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCHHH---HHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            87654   444578888999999999999998    45688999999999999999999999888876

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.66  E-value=8.4e-15  Score=124.77  Aligned_cols=133  Identities=17%  Similarity=0.160  Sum_probs=114.8

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE   90 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   90 (476)
                      ...++.+|..+...|++++|+..|++++    +.++.++..+|.++...|++++|+..|++++..+|.++.+++.+|.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            3457788999999999999999999885    236788899999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHhhccCCCcH----------------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 011845           91 LRQGNIKKARQLLAKGLKFCGGNE----------------YIYQTLALLEAKANRYEQARNLFRQATKCNPKS  147 (476)
Q Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  147 (476)
                      ...|++++|+..|+++++..|.+.                .++..+|.++...|++++|+..|+++++..|++
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            999999999999999998777655                888888888888888888888888888888876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.65  E-value=4e-16  Score=131.41  Aligned_cols=151  Identities=12%  Similarity=-0.030  Sum_probs=74.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH----------------
Q 011845           17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI----------------   80 (476)
Q Consensus        17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------   80 (476)
                      .+......|++++|.+.+....... +.....+..+|..++..|++++|+..|++++...|.++                
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~   88 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI   88 (198)
T ss_dssp             ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence            3344444555555555554443332 33445556666666666666666666666666555554                


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ  160 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  160 (476)
                      .++..+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hccHHHHH
Q 011845          161 QENNLAAR  168 (476)
Q Consensus       161 ~~~~~~A~  168 (476)
                      .++..++.
T Consensus       169 ~~~~~~~~  176 (198)
T 2fbn_A          169 LKEARKKD  176 (198)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHH
Confidence            44444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.65  E-value=3.6e-16  Score=131.68  Aligned_cols=152  Identities=13%  Similarity=0.051  Sum_probs=98.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH----------------
Q 011845           51 CWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE----------------  114 (476)
Q Consensus        51 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------  114 (476)
                      ..+.+....|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.++                
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~   88 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI   88 (198)
T ss_dssp             -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence            3445556677777777777766655566677788888888888888888888888888777765                


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845          115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN  194 (476)
Q Consensus       115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  194 (476)
                      .++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++..++..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            56666777777777777777777777777666666677777777777777777777777776666666666666666666


Q ss_pred             cCCHHHHH
Q 011845          195 MGFIDKGK  202 (476)
Q Consensus       195 ~~~~~~A~  202 (476)
                      .++..++.
T Consensus       169 ~~~~~~~~  176 (198)
T 2fbn_A          169 LKEARKKD  176 (198)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHH
Confidence            65555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=5e-15  Score=114.63  Aligned_cols=98  Identities=12%  Similarity=0.041  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ  160 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  160 (476)
                      ..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             hccHHHHHHHHHHHHHcC
Q 011845          161 QENNLAARQLFERAVQAS  178 (476)
Q Consensus       161 ~~~~~~A~~~~~~a~~~~  178 (476)
                      .|++++|+..|+++++.+
T Consensus        85 ~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           85 VKEYASALETLDAARTKD  102 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhC
Confidence            444444444444444444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=2.9e-15  Score=115.98  Aligned_cols=111  Identities=8%  Similarity=-0.090  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      ..+..+|..++..|++++|+..|++++..+|.++.+|..+|.++...|++++|+..++++++.+|.++.++..+|.++..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444555555555555444444444444455555555


Q ss_pred             hccHHHHHHHHHHHHhcC------CCchhHHHHHHHH
Q 011845          127 ANRYEQARNLFRQATKCN------PKSCASWIAWSQM  157 (476)
Q Consensus       127 ~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~  157 (476)
                      .|++++|+..|+++++.+      |.+..++..++.+
T Consensus        85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~  121 (126)
T 3upv_A           85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  121 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence            555555555555555444      4444444444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.64  E-value=2.6e-15  Score=123.89  Aligned_cols=127  Identities=17%  Similarity=0.246  Sum_probs=84.6

Q ss_pred             HhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH--HHHH
Q 011845          160 QQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALL-EYKYSTA--NLAR  236 (476)
Q Consensus       160 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~--~~A~  236 (476)
                      ..|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.+ +...|++  ++|+
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~  101 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR  101 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence            456666666666666666666666666666666666677777777776666666666666666666 5566666  7777


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845          237 KLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA  286 (476)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  286 (476)
                      ..|++++..+|+++.++..+|.++...|++++|+..|++++...|++...
T Consensus       102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A          102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR  151 (177)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence            77777777777777777777777777777777777777777777666543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.64  E-value=1.4e-14  Score=123.47  Aligned_cols=132  Identities=14%  Similarity=0.057  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      ..++.+|.++...|++++|+..|++++  +| ++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++..
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            446677888888888888888888875  23 667888888888888888888888888888888888888888888888


Q ss_pred             hccHHHHHHHHHHHHhcCCCch----------------hHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845          127 ANRYEQARNLFRQATKCNPKSC----------------ASWIAWSQMEMQQENNLAARQLFERAVQASPKN  181 (476)
Q Consensus       127 ~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  181 (476)
                      .|++++|+..|+++++..|.+.                .++..+|.++...|++++|+..|+++++..|++
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            8888888888888888777665                778888888888888888888888888888765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.64  E-value=3e-14  Score=127.87  Aligned_cols=168  Identities=8%  Similarity=-0.094  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------H
Q 011845          183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP------VLLQSLALLEYKYSTANLARKLFRRASEIDPRH------Q  250 (476)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~  250 (476)
                      ..+...+..+...|++++|+..+.+++...+...      ..+..+|.++...|++++|+..+++++...+..      .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3445556666677777777777777776665543      234556777777778888888888877654332      4


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHH---ccCCCChhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------c
Q 011845          251 PVWIAWGWMEWKEGNLDTARELYERAL---SIDSTTESAA-RCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ------S  320 (476)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~---~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~  320 (476)
                      .++..+|.+|...|++++|+.+|++++   +..|++.... .++.++|.+|...|++++|+.+|++++.+.++      .
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            577788888888888888888888887   4455543322 56778888888888888888888888876432      2


Q ss_pred             HHHHHHHHHHHHHcCChHHH-HHHHHHHHhh
Q 011845          321 YITWMTWAQLEEDQGNSVRA-EEIRNLYFQQ  350 (476)
Q Consensus       321 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~  350 (476)
                      ..++.++|.++...|++++| ...+++++..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            56788888888888888888 6667776653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.64  E-value=1.5e-14  Score=117.69  Aligned_cols=130  Identities=11%  Similarity=-0.029  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA  125 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  125 (476)
                      +..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhccHHHHHHHHHHHHhcCCCchhHHHH--HHHHHHHhccHHHHHHHHHHHH
Q 011845          126 KANRYEQARNLFRQATKCNPKSCASWIA--WSQMEMQQENNLAARQLFERAV  175 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~a~  175 (476)
                      ..|++++|+.+|++++...|.+..++..  ++..+...|++++|+..+.++.
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            6666666666666666666666555533  3333555666666666665544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=1.3e-14  Score=141.11  Aligned_cols=186  Identities=11%  Similarity=0.050  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--CH
Q 011845          131 EQARNLFRQATKCNPKSCASWIAWSQMEMQQEN----------NLAARQLFERAVQASPKNRFAWHVWGIFEANMG--FI  198 (476)
Q Consensus       131 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~  198 (476)
                      ++|+..+++++..+|++..+|...+.++...|+          +++++..++++++.+|++..+|...+.++...+  ++
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence            455666666666666666666666666666555          556666666666666666666666666666555  44


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011845          199 DKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS-TANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL  277 (476)
Q Consensus       199 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  277 (476)
                      ++++..+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|...+.++...+...++        
T Consensus       126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~--------  197 (567)
T 1dce_A          126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS--------  197 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS--------
T ss_pred             HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc--------
Confidence            56666666666666666666666555555555 555555555555555555555555555555544332110        


Q ss_pred             ccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHH
Q 011845          278 SIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVR  339 (476)
Q Consensus       278 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  339 (476)
                        .+...             ...+.+++|++++.+++..+|++..+|+.++.++...+++++
T Consensus       198 --~~~~~-------------~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          198 --GPQGR-------------LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             --SSCCS-------------SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             --ccccc-------------ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence              00000             001457999999999999999999999999999998887554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.63  E-value=2.3e-15  Score=124.28  Aligned_cols=123  Identities=15%  Similarity=0.195  Sum_probs=60.3

Q ss_pred             cCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HHHhccH--HHHHH
Q 011845           59 LGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL-EAKANRY--EQARN  135 (476)
Q Consensus        59 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~~~~g~~--~~A~~  135 (476)
                      .|++++|+..+++++..+|.++.+|..+|.++...|++++|+..|+++++.+|.++.++..+|.+ +...|++  ++|+.
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~  102 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA  102 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555554 4444444  55555


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845          136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN  181 (476)
Q Consensus       136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  181 (476)
                      .+++++..+|+++.++..+|.++...|++++|+..|++++...|++
T Consensus       103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A          103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            5555555555555555555555555555555555555555554444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.63  E-value=5.6e-14  Score=126.05  Aligned_cols=169  Identities=8%  Similarity=-0.066  Sum_probs=127.6

Q ss_pred             hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------
Q 011845          148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNR------FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD------  215 (476)
Q Consensus       148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------  215 (476)
                      ...+...+..+...|++++|+..+.++++..+...      ..++.+|.++...|++++|+..+++++...+..      
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            34455566777777888888888877777666543      334567777788888888888888888765433      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHccCCC---Chh
Q 011845          216 PVLLQSLALLEYKYSTANLARKLFRRAS---EIDPRHQ----PVWIAWGWMEWKEGNLDTARELYERALSIDST---TES  285 (476)
Q Consensus       216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~  285 (476)
                      ..++..+|.+|...|++++|+.+|++++   +..|++.    .+++++|.+|...|++++|+.++++++.+.+.   ...
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            4578888888888899999999888888   4455543    57888999999999999999999998876432   222


Q ss_pred             HHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhh
Q 011845          286 AARCLQAWGVLEQRVGNLSAA-RRLFRSSLNI  316 (476)
Q Consensus       286 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~  316 (476)
                      ...++..+|.++...|++++| ..+|++++.+
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            356788889999999999999 7789988764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.63  E-value=1.8e-14  Score=117.33  Aligned_cols=133  Identities=12%  Similarity=0.017  Sum_probs=123.3

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL   89 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~   89 (476)
                      .+..++.+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.+
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            45678999999999999999999999999988 88999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCcHHHHHHH--HHHHHHhccHHHHHHHHHHHHhc
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTL--ALLEAKANRYEQARNLFRQATKC  143 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~  143 (476)
                      +...|++++|+..+++++...|.+..++..+  +..+...|++++|+..+.++...
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999999999999999999999999888554  44588899999999999987654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-14  Score=113.53  Aligned_cols=117  Identities=9%  Similarity=0.007  Sum_probs=58.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845           45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE  124 (476)
Q Consensus        45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  124 (476)
                      ++..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            34444455555555555555555555555555544555555555555555555555555555555554455555555555


Q ss_pred             HHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845          125 AKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus       125 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      ...|++++|+..|++++..+|.+..++..++.++...
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            5555555555555555555554444444444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.61  E-value=1.4e-14  Score=112.99  Aligned_cols=121  Identities=9%  Similarity=0.031  Sum_probs=85.9

Q ss_pred             CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHH
Q 011845           76 DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWS  155 (476)
Q Consensus        76 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la  155 (476)
                      .|.+..+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            34556677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 011845          156 QMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG  196 (476)
Q Consensus       156 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  196 (476)
                      .++...|++++|+..|++++..+|.+..++..++.++...|
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            77777777777777777777777776666666666666554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.61  E-value=1.4e-14  Score=112.53  Aligned_cols=117  Identities=14%  Similarity=0.121  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845           80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM  159 (476)
Q Consensus        80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  159 (476)
                      ...+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|+++.++..+|.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 011845          160 QQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG  196 (476)
Q Consensus       160 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  196 (476)
                      ..|++++|+..+++++...|++..++..++.++...|
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            4444444444444444444444444444444444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.61  E-value=1.9e-14  Score=111.84  Aligned_cols=119  Identities=15%  Similarity=0.135  Sum_probs=62.8

Q ss_pred             chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011845          147 SCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE  226 (476)
Q Consensus       147 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  226 (476)
                      +...+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            33444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 011845          227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGN  265 (476)
Q Consensus       227 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  265 (476)
                      ...|++++|+.+|+++++..|+++.++..++.++...|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            555555555555555555555555555555555555444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.60  E-value=1.3e-14  Score=117.99  Aligned_cols=112  Identities=10%  Similarity=0.024  Sum_probs=68.0

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845           44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL  123 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~  123 (476)
                      .++..+..+|.++...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+..|+++++++|.+..+++.+|.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34455566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHhccHHHHHHHHHHHHhcCCCchhHHHHHH
Q 011845          124 EAKANRYEQARNLFRQATKCNPKSCASWIAWS  155 (476)
Q Consensus       124 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la  155 (476)
                      +...|++++|+..|+++++++|++..++...+
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            66666666666666666666666655444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.60  E-value=1.5e-14  Score=117.55  Aligned_cols=113  Identities=15%  Similarity=0.153  Sum_probs=72.7

Q ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845           77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ  156 (476)
Q Consensus        77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  156 (476)
                      +.+...++.+|.++...|++++|+..|+++++.+|.+..++..+|.+|...|++++|+..|+++++++|+++.+++.+|.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34455666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 011845          157 MEMQQENNLAARQLFERAVQASPKNRFAWHVWG  189 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  189 (476)
                      ++...|++++|+..|+++++++|++...+...+
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            666666666666666666666666655444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.58  E-value=4.2e-14  Score=109.29  Aligned_cols=104  Identities=20%  Similarity=0.249  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh----hHHHHHH
Q 011845          216 PVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE----SAARCLQ  291 (476)
Q Consensus       216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~  291 (476)
                      ..++..+|..++..|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|+..    ....++.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            445667788888888888888888888888888888888888888888888888888888887766543    2244677


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845          292 AWGVLEQRVGNLSAARRLFRSSLNINSQ  319 (476)
Q Consensus       292 ~l~~~~~~~g~~~~A~~~~~~al~~~p~  319 (476)
                      ++|.++...|++++|+++|++++...|+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            7888888888888888888888887775

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.58  E-value=5.9e-14  Score=125.90  Aligned_cols=167  Identities=14%  Similarity=-0.018  Sum_probs=83.1

Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhccCCCcHH------HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch------hHHHH
Q 011845           86 WAVLELRQGNIKKARQLLAKGLKFCGGNEY------IYQTLALLEAKANRYEQARNLFRQATKCNPKSC------ASWIA  153 (476)
Q Consensus        86 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~  153 (476)
                      .+..+...|++++|...+++++...+..+.      .+..+|.++...|++++|+..|++++...+...      .++..
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            355555666666666666666655444332      122355555555555555555555555432211      13455


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN  233 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  233 (476)
                      +|.+|...|++++|+.+|+++++.....+                           ...+....++.++|.++...|+++
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~nlg~~y~~~~~y~  213 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALH---------------------------DNEEFDVKVRYNHAKALYLDSRYE  213 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSS---------------------------CCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcc---------------------------cchhHHHHHHHHHHHHHHHHhHHH
Confidence            55555555555555555555543100000                           000111234455555555555555


Q ss_pred             HHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCC-hhHHHHHHHHHHcc
Q 011845          234 LARKLFRRASEIDPRH------QPVWIAWGWMEWKEGN-LDTARELYERALSI  279 (476)
Q Consensus       234 ~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~  279 (476)
                      +|+.++++++++.+..      +.++..+|.++...|+ +++|+.+|++++.+
T Consensus       214 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            5555555555443221      4556666666666663 46666666666554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.58  E-value=1.9e-13  Score=122.61  Aligned_cols=165  Identities=8%  Similarity=-0.103  Sum_probs=119.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHH
Q 011845          187 VWGIFEANMGFIDKGKKLLKIGHAVNPRDPV------LLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWI  254 (476)
Q Consensus       187 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~  254 (476)
                      ..+..+...|++++|...+++++...+..+.      .+..+|.++...+++++|+.+|++++...+..      ..++.
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            3455666677777777777777766655544      23346777777778888888888887754322      23678


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHcc---C-CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc------HHHH
Q 011845          255 AWGWMEWKEGNLDTARELYERALSI---D-STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS------YITW  324 (476)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~a~~~---~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~  324 (476)
                      .+|.+|...|++++|+.+|+++++.   . .+......++.++|.+|...|++++|+.++++++++.+..      ..++
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            8888888888888888888888853   1 2334445678888999999999999999999988875333      6788


Q ss_pred             HHHHHHHHHcCC-hHHHHHHHHHHHhhh
Q 011845          325 MTWAQLEEDQGN-SVRAEEIRNLYFQQR  351 (476)
Q Consensus       325 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~  351 (476)
                      ..+|.++...|+ +++|...+++++...
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            888888888884 588888877776643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.57  E-value=4.1e-14  Score=111.14  Aligned_cols=103  Identities=10%  Similarity=-0.025  Sum_probs=54.9

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845           44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL  123 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~  123 (476)
                      .++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhccHHHHHHHHHHHHhcCCC
Q 011845          124 EAKANRYEQARNLFRQATKCNPK  146 (476)
Q Consensus       124 ~~~~g~~~~A~~~~~~~~~~~p~  146 (476)
                      +...|++++|+..|++++...|+
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHChh
Confidence            55555555555555555555444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.57  E-value=2.4e-15  Score=143.40  Aligned_cols=145  Identities=14%  Similarity=0.132  Sum_probs=90.7

Q ss_pred             HcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---------------HHHHHHHHH
Q 011845           58 KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---------------EYIYQTLAL  122 (476)
Q Consensus        58 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~  122 (476)
                      ..+++++|+..|+.++...|.....+..+|..+...|++++|+..|+++++..|.+               ..++.++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34556677777777777777778888888888888888888888888888887776               345555555


Q ss_pred             HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 011845          123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK  202 (476)
Q Consensus       123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  202 (476)
                      +|..+|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.57  E-value=1.5e-13  Score=105.70  Aligned_cols=96  Identities=20%  Similarity=0.265  Sum_probs=34.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845           50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR  129 (476)
Q Consensus        50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  129 (476)
                      ..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|+
T Consensus        13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   92 (125)
T 1na0_A           13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD   92 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC
Confidence            33333333333333333333333333333333333333333333333333333333333333333333333333333333


Q ss_pred             HHHHHHHHHHHHhcCC
Q 011845          130 YEQARNLFRQATKCNP  145 (476)
Q Consensus       130 ~~~A~~~~~~~~~~~p  145 (476)
                      +++|+.++++++...|
T Consensus        93 ~~~A~~~~~~~~~~~~  108 (125)
T 1na0_A           93 YDEAIEYYQKALELDP  108 (125)
T ss_dssp             HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            3333333333333333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.57  E-value=3.4e-14  Score=108.68  Aligned_cols=99  Identities=15%  Similarity=0.077  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 011845           49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN  128 (476)
Q Consensus        49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g  128 (476)
                      ++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cHHHHHHHHHHHHhcCCCc
Q 011845          129 RYEQARNLFRQATKCNPKS  147 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~  147 (476)
                      ++++|+..|+++++.+|++
T Consensus       100 ~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHhCcCC
Confidence            5555555555555555543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.57  E-value=2e-13  Score=105.01  Aligned_cols=111  Identities=19%  Similarity=0.272  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 011845          150 SWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY  229 (476)
Q Consensus       150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  229 (476)
                      ++..+|.++...|++++|+..+++++...|.+..++..++.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 011845          230 STANLARKLFRRASEIDPRHQPVWIAWGWME  260 (476)
Q Consensus       230 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  260 (476)
                      |++++|+..+++++...|+++.++..++.++
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           91 GDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4444444444444444444444444444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.56  E-value=7.9e-14  Score=109.50  Aligned_cols=119  Identities=14%  Similarity=0.054  Sum_probs=74.0

Q ss_pred             cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHH
Q 011845            6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHG   85 (476)
Q Consensus         6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~   85 (476)
                      .+|.++..++.+|.+++..|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.++.+++.
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            445566666666666666666666666666666665 5566666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHH
Q 011845           86 WAVLELRQGNIKKARQLLAKGLKFCGG-----NEYIYQTLALLEA  125 (476)
Q Consensus        86 la~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~~~  125 (476)
                      +|.++...|++++|+..|++++...|+     +..+...+..+..
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666554     4444444444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.56  E-value=3.8e-15  Score=142.01  Aligned_cols=142  Identities=11%  Similarity=0.062  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHH
Q 011845          129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN---------------RFAWHVWGIFEA  193 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~  193 (476)
                      ++++|+..++.++...|.....+..+|..+...|++++|+..|++++...|.+               ..++.++|.++.
T Consensus       249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~  328 (457)
T 1kt0_A          249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL  328 (457)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444445555555555555555555555555555555544               344555555555


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHH
Q 011845          194 NMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAR  270 (476)
Q Consensus       194 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  270 (476)
                      .+|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus       329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555544443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.55  E-value=5.1e-14  Score=107.70  Aligned_cols=101  Identities=17%  Similarity=0.096  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      .++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            35566666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ccHHHHHHHHHHHHHcCCCcH
Q 011845          162 ENNLAARQLFERAVQASPKNR  182 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~~~~~  182 (476)
                      |++++|+..|+++++.+|.+.
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            777777777777766666543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.55  E-value=5.9e-14  Score=108.44  Aligned_cols=97  Identities=13%  Similarity=0.126  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch-------hHHHHHH
Q 011845           83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC-------ASWIAWS  155 (476)
Q Consensus        83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~la  155 (476)
                      +..+|..++..|++++|+..|+++++++|.++.++..+|.+|..+|++++|+..+++++++.|++.       .++..+|
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   90 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG   90 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444444444444444433321       1333344


Q ss_pred             HHHHHhccHHHHHHHHHHHHHcCC
Q 011845          156 QMEMQQENNLAARQLFERAVQASP  179 (476)
Q Consensus       156 ~~~~~~~~~~~A~~~~~~a~~~~~  179 (476)
                      .++...|++++|+..|++++...|
T Consensus        91 ~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           91 NAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCc
Confidence            444444444444444444444433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=2.1e-13  Score=103.66  Aligned_cols=106  Identities=15%  Similarity=0.099  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 011845           49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN  128 (476)
Q Consensus        49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g  128 (476)
                      +..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   86 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   86 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence            33344444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             cHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845          129 RYEQARNLFRQATKCNPKSCASWIAW  154 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~~~~~~~l  154 (476)
                      ++++|+..++++++.+|+++.++..+
T Consensus        87 ~~~~A~~~~~~~~~~~~~~~~~~~~l  112 (118)
T 1elw_A           87 RFEEAKRTYEEGLKHEANNPQLKEGL  112 (118)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            44444444444444444444333333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.6e-13  Score=109.19  Aligned_cols=114  Identities=17%  Similarity=0.066  Sum_probs=56.1

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHH
Q 011845           44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL  120 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  120 (476)
                      .+...++.+|..+...|++++|+..|++++..+|++   ..++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            344444444444444444444444444444444443   44444555555555555555555555555555555555555


Q ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 011845          121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM  157 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  157 (476)
                      |.++...|++++|+.+|++++..+|++..++..++.+
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            5555555555555555555555555554444444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.54  E-value=4.4e-13  Score=101.90  Aligned_cols=96  Identities=10%  Similarity=0.052  Sum_probs=35.0

Q ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 011845          120 LALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFID  199 (476)
Q Consensus       120 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  199 (476)
                      +|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus        10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   89 (118)
T 1elw_A           10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE   89 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333333333333333333


Q ss_pred             HHHHHHHHHHhcCCCC
Q 011845          200 KGKKLLKIGHAVNPRD  215 (476)
Q Consensus       200 ~A~~~~~~~~~~~~~~  215 (476)
                      +|+..+++++...|.+
T Consensus        90 ~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           90 EAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            3333333333333333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.54  E-value=2.1e-13  Score=115.04  Aligned_cols=136  Identities=20%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCCC--
Q 011845          181 NRFAWHVWGIFEANMGFIDKGKKLLKIGHAV------NPRDPVLLQSLALLEYKYSTANLARKLFRRASEI---DPRH--  249 (476)
Q Consensus       181 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~--  249 (476)
                      ...++..+|.++...|++++|+..+++++..      .+....++..+|.++...|++++|+.++++++..   .+++  
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            3444444444444444444444444444441      1222334445555555555555555555555444   2211  


Q ss_pred             --HHHHHHHHHHHHHcCChhHHHHHHHHHHccCC---CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          250 --QPVWIAWGWMEWKEGNLDTARELYERALSIDS---TTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       250 --~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                        ..++..+|.++...|++++|+.++++++...+   +......++..+|.++...|++++|..++++++.+
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence              23445555555555555555555555554321   11112233445555566666666666666555543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.53  E-value=1.1e-13  Score=112.14  Aligned_cols=114  Identities=12%  Similarity=0.041  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhc------------------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhc
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVA------------------DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLK  108 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  108 (476)
                      ..+...|..++..|++++|+..|.+++..                  +|.+..++..+|.++...|++++|+..+++++.
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            44555555555555555555555555554                  444555666666666666666666666666666


Q ss_pred             cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHH
Q 011845          109 FCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC-ASWIAWSQMEMQ  160 (476)
Q Consensus       109 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~  160 (476)
                      ++|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+...
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666655 344444444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.53  E-value=3.6e-14  Score=111.04  Aligned_cols=103  Identities=14%  Similarity=0.044  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC-------c-----HHHHHHHHHHHHHhCCHHHHHHHHHHhhcc-----
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKG-------H-----IAAWHGWAVLELRQGNIKKARQLLAKGLKF-----  109 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----  109 (476)
                      ..+...|..++..|++++|+..|+++++.+|+       +     ..+|.++|.++..+|++++|+..+++++++     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            34555566666666666666666666666555       2     225556666666666666666666666555     


Q ss_pred             --CCCcHHHH----HHHHHHHHHhccHHHHHHHHHHHHhcCCCchh
Q 011845          110 --CGGNEYIY----QTLALLEAKANRYEQARNLFRQATKCNPKSCA  149 (476)
Q Consensus       110 --~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  149 (476)
                        +|++..+|    +++|.++..+|++++|+..|++++++.|++..
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence              55555555    56666666666666666666666655555543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.52  E-value=3.7e-13  Score=113.43  Aligned_cols=162  Identities=14%  Similarity=0.075  Sum_probs=129.6

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHcCCh
Q 011845          193 ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEI------DPRHQPVWIAWGWMEWKEGNL  266 (476)
Q Consensus       193 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~  266 (476)
                      ...|++++|...++......+....++..+|.++...|++++|+..+++++..      .+....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45788999988555554433356789999999999999999999999999983      344567889999999999999


Q ss_pred             hHHHHHHHHHHcc---CCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--Cc----HHHHHHHHHHHHHcCC
Q 011845          267 DTARELYERALSI---DSTTE-SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS--QS----YITWMTWAQLEEDQGN  336 (476)
Q Consensus       267 ~~A~~~~~~a~~~---~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~g~  336 (476)
                      ++|+.++++++..   .++++ ....++..+|.++...|++++|..++++++...+  .+    ..++..++.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9999999999987   55333 4466788999999999999999999999997632  22    2356899999999999


Q ss_pred             hHHHHHHHHHHHhhhhhh
Q 011845          337 SVRAEEIRNLYFQQRTEV  354 (476)
Q Consensus       337 ~~~A~~~~~~~~~~~~~~  354 (476)
                      +++|...+++++......
T Consensus       163 ~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          163 LLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999888755443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.52  E-value=1.3e-13  Score=111.80  Aligned_cols=116  Identities=10%  Similarity=0.013  Sum_probs=88.6

Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHhhcc------------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845           79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKF------------------CGGNEYIYQTLALLEAKANRYEQARNLFRQA  140 (476)
Q Consensus        79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  140 (476)
                      ....+...|..++..|++++|+..|.+++..                  +|.+..++..+|.+|...|++++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3567888999999999999999999999988                  5555667777777777777777777777777


Q ss_pred             HhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHH
Q 011845          141 TKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR-FAWHVWGIFEAN  194 (476)
Q Consensus       141 ~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~  194 (476)
                      +.++|+++.+++.+|.++...|++++|+..|++++.++|+++ .+...+..+...
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777776 445555554433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=4.5e-13  Score=106.59  Aligned_cols=117  Identities=14%  Similarity=0.051  Sum_probs=82.3

Q ss_pred             CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHH
Q 011845           76 DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI  152 (476)
Q Consensus        76 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  152 (476)
                      +|.+...++.+|..+...|++++|+..|+++++..|++   ..++..+|.++...|++++|+..+++++...|+++.++.
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            45566677777777777777777777777777777765   666777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 011845          153 AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFE  192 (476)
Q Consensus       153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  192 (476)
                      .+|.++...|++++|+..|++++..+|++..++..++.+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            7777777777777777777777777777666666555543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.52  E-value=1.6e-13  Score=103.30  Aligned_cols=107  Identities=13%  Similarity=0.065  Sum_probs=83.6

Q ss_pred             cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC--cHHHH
Q 011845            6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG--HIAAW   83 (476)
Q Consensus         6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~   83 (476)
                      ++|+++.+++.+|.++...|++++|+..|+++++.. |.+..++..+|.++...|++++|+..|++++..+|.  +..++
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   79 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW   79 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH
Confidence            367777888888888888888888888888887776 677777777888888888888888888888777777  77777


Q ss_pred             HHHHHHHHHh-CCHHHHHHHHHHhhccCCCc
Q 011845           84 HGWAVLELRQ-GNIKKARQLLAKGLKFCGGN  113 (476)
Q Consensus        84 ~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~  113 (476)
                      ..+|.++... |++++|+..+++++...|.+
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           80 AAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            7777777777 77777777777777777654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.51  E-value=4.5e-13  Score=103.89  Aligned_cols=117  Identities=17%  Similarity=0.115  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHH
Q 011845          218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQ---PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWG  294 (476)
Q Consensus       218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~  294 (476)
                      .++.+|..+...|++++|+..|+++++..|+++   .+++.+|.++...|++++|+..|++++...|+++.....+..+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            355667777777777777777777777777666   67777777777777777777777777777777755445566777


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 011845          295 VLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQ  334 (476)
Q Consensus       295 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  334 (476)
                      .++...|++++|+..|++++...|++..+......+....
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~  123 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR  123 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            7777777777777777777777777776655555444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.50  E-value=1.7e-13  Score=107.28  Aligned_cols=99  Identities=11%  Similarity=0.009  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCCCc------------hhHHHHHHHHHHHhccHHHHHHHHHHHHHc-------
Q 011845          117 YQTLALLEAKANRYEQARNLFRQATKCNPKS------------CASWIAWSQMEMQQENNLAARQLFERAVQA-------  177 (476)
Q Consensus       117 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------  177 (476)
                      +...|..+...|++++|+..|+++++++|++            ..+|.++|.++...|++++|+..|++++++       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3444444444444444444444444444441            125555555555555555555555555554       


Q ss_pred             CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011845          178 SPKNRFAW----HVWGIFEANMGFIDKGKKLLKIGHAVNPRD  215 (476)
Q Consensus       178 ~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  215 (476)
                      +|++..+|    +++|.++..+|++++|+..|++++++.|++
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            55555555    555555555555555555555555544443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.50  E-value=6.2e-13  Score=103.08  Aligned_cols=107  Identities=11%  Similarity=-0.012  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHH
Q 011845           13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENP---YIWQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGW   86 (476)
Q Consensus        13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l   86 (476)
                      .++.+|.+++..|++++|+..|++++... |.++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            34555555555555555555555555554 4444   455555555555555555555555555555555   4555555


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHH
Q 011845           87 AVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL  120 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  120 (476)
                      |.++...|++++|+..|++++...|++..+....
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~  116 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ  116 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            5555555555555555555555555554444333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.49  E-value=2.1e-14  Score=137.41  Aligned_cols=123  Identities=8%  Similarity=0.004  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 011845          152 IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYST  231 (476)
Q Consensus       152 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  231 (476)
                      ..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            33444444555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHH--HHHcCChhHHHHHHH
Q 011845          232 ANLARKLFRRASEIDPRHQPVWIAWGWM--EWKEGNLDTARELYE  274 (476)
Q Consensus       232 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  274 (476)
                      +++|+..|+++++..|++..++..++.+  +...|++++|+..++
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5555555555555555555555555544  445555555555555

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.49  E-value=1.3e-14  Score=138.76  Aligned_cols=128  Identities=13%  Similarity=0.016  Sum_probs=87.3

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL   89 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~   89 (476)
                      .+..+..+|..+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|.+..+++.+|.+
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34556666667777777777777777777766 66677777777777777777777777777777777777777777777


Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH--HHHhccHHHHHHHHH
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL--EAKANRYEQARNLFR  138 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~  138 (476)
                      +..+|++++|+..|+++++.+|++..++..++.+  +...|++++|+..++
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            7777777777777777777777766666666666  666677777777776

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.8e-11  Score=116.29  Aligned_cols=216  Identities=11%  Similarity=0.054  Sum_probs=100.4

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE   90 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   90 (476)
                      |...+..|..+...|+|++|++.|.++++.. +.........+.....       ...          ...++..+|.+|
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~-------~~~----------~~~al~~l~~~y   65 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKR-------RNE----------QETSILELGQLY   65 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHH-------HHH----------HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHH-------hhh----------HHHHHHHHHHHH
Confidence            3445666777777777777777777777665 3221100000000000       000          011233444444


Q ss_pred             HHhCCHHHHHHHHHHhhccCCCcH------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCC------CchhHHHHHHHHH
Q 011845           91 LRQGNIKKARQLLAKGLKFCGGNE------YIYQTLALLEAKANRYEQARNLFRQATKCNP------KSCASWIAWSQME  158 (476)
Q Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~  158 (476)
                      ...|++++|.+.+.+++...+...      .+...++.++...|++++|+.++++++...+      ....++..+|.++
T Consensus        66 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  145 (434)
T 4b4t_Q           66 VTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH  145 (434)
T ss_dssp             HHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            444444444444444444322211      1223344444444555555555555444321      1133445555555


Q ss_pred             HHhccHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----HHHHHHHHHH
Q 011845          159 MQQENNLAARQLFERAVQA------SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNP---RD----PVLLQSLALL  225 (476)
Q Consensus       159 ~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~~la~~  225 (476)
                      ...|++++|...+++++..      .+....++..++.++...|++++|...+++++...+   ..    ...+..+|.+
T Consensus       146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~  225 (434)
T 4b4t_Q          146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL  225 (434)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence            5555555555555555443      112234555555555555555555555555544321   11    1234455555


Q ss_pred             HHHcCCHHHHHHHHHHHhc
Q 011845          226 EYKYSTANLARKLFRRASE  244 (476)
Q Consensus       226 ~~~~~~~~~A~~~~~~~~~  244 (476)
                      +...+++.+|..+|.+++.
T Consensus       226 ~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          226 HCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             TTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHH
Confidence            5566666666666655554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.48  E-value=2.7e-14  Score=130.52  Aligned_cols=156  Identities=15%  Similarity=0.084  Sum_probs=76.3

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHH
Q 011845            9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAV   88 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~   88 (476)
                      ..+..+..+|..++..|+|++|+..|++++... |.+..        +...|++.++...+.         ..+++.+|.
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~  238 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccchh--------hhhcccHHHHHHHHH---------HHHHHHHHH
Confidence            344556666666666777777777777766655 33321        111222222222211         136777888


Q ss_pred             HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHhccHHHH
Q 011845           89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM-EMQQENNLAA  167 (476)
Q Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~~~~~~~~~A  167 (476)
                      ++...|++++|+..|+++++.+|.+..+++.+|.+|...|++++|+..|+++++++|++..++..++.+ ....+..+++
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888777777777777 3445666777


Q ss_pred             HHHHHHHHHcCCCcH
Q 011845          168 RQLFERAVQASPKNR  182 (476)
Q Consensus       168 ~~~~~~a~~~~~~~~  182 (476)
                      ...|.+++...|.++
T Consensus       319 ~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          319 KEMYKGIFKGKDEGG  333 (338)
T ss_dssp             ---------------
T ss_pred             HHHHHHhhCCCCCCC
Confidence            778888877777654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.47  E-value=3.7e-13  Score=101.26  Aligned_cols=100  Identities=13%  Similarity=0.075  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Q 011845          182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR--HQPVWIAWGWM  259 (476)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~  259 (476)
                      ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..|+++++..|.  +..++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444444444444444444444444444  44444444444


Q ss_pred             HHHc-CChhHHHHHHHHHHccCC
Q 011845          260 EWKE-GNLDTARELYERALSIDS  281 (476)
Q Consensus       260 ~~~~-g~~~~A~~~~~~a~~~~~  281 (476)
                      +... |++++|+.++++++...|
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhccc
Confidence            4444 444444444444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.47  E-value=6.9e-13  Score=102.90  Aligned_cols=109  Identities=15%  Similarity=0.144  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-------HHHHHHH
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN-------EYIYQTL  120 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l  120 (476)
                      .+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+       ..++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444444444443333       3444444


Q ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 011845          121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM  157 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  157 (476)
                      |.++...|++++|+..|++++...| ++..+..++.+
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~  121 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence            4444444444444444444444444 23333333333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.46  E-value=5.5e-13  Score=103.44  Aligned_cols=120  Identities=16%  Similarity=0.105  Sum_probs=109.2

Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc-------H
Q 011845            8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-------I   80 (476)
Q Consensus         8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------~   80 (476)
                      |..+..++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..+++++...|.+       .
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   79 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA   79 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence            3456789999999999999999999999999988 8899999999999999999999999999999998877       8


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR  129 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  129 (476)
                      .++..+|.++...|++++|+..|++++...| ++..+..++.+....++
T Consensus        80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999988 68888888877765543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.46  E-value=9.9e-14  Score=126.76  Aligned_cols=154  Identities=11%  Similarity=0.026  Sum_probs=63.4

Q ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 011845          113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFE  192 (476)
Q Consensus       113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  192 (476)
                      ....+..+|..+...|++++|+..|++++...|++.        .+...|++.++...+.         ..+++++|.++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~~  240 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence            344555555555556666666666666665555432        1122233333332221         12556666666


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHcCChhHHHH
Q 011845          193 ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWME-WKEGNLDTARE  271 (476)
Q Consensus       193 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~  271 (476)
                      ...|++++|+..+++++..+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+. ...+..+++..
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666655552 33445555555


Q ss_pred             HHHHHHccCCCC
Q 011845          272 LYERALSIDSTT  283 (476)
Q Consensus       272 ~~~~a~~~~~~~  283 (476)
                      .|.+++...|.+
T Consensus       321 ~~~~~l~~~p~~  332 (338)
T 2if4_A          321 MYKGIFKGKDEG  332 (338)
T ss_dssp             ------------
T ss_pred             HHHHhhCCCCCC
Confidence            666666555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.45  E-value=7.9e-12  Score=118.77  Aligned_cols=164  Identities=13%  Similarity=0.003  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH------HHHHHHHHHHHHhCCHHHHHHHHHHhhccC------CCcHH
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI------AAWHGWAVLELRQGNIKKARQLLAKGLKFC------GGNEY  115 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~  115 (476)
                      ++..+|.+|...|++++|++.+.+++...+...      .+...++.++...|++++|+.++++++...      +....
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            456677777777777777777777765433321      233456666667777777777777776542      22355


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC---CCc----H
Q 011845          116 IYQTLALLEAKANRYEQARNLFRQATKCN------PKSCASWIAWSQMEMQQENNLAARQLFERAVQAS---PKN----R  182 (476)
Q Consensus       116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~----~  182 (476)
                      ++..+|.+|...|++++|+..+++++...      +....++..++.+|...|++++|...+++++...   +..    .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            67778888888888888888887776542      2334577778888888888888888888777653   222    2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845          183 FAWHVWGIFEANMGFIDKGKKLLKIGHAV  211 (476)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  211 (476)
                      ..+..+|.++...|++++|...|.+++..
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            45666777777788888888888777653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.44  E-value=1.9e-12  Score=119.50  Aligned_cols=121  Identities=12%  Similarity=-0.030  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhh----------------cCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTV----------------ADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC  110 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  110 (476)
                      ..+..+|..+...|++++|+..|++++.                .+|.+..++..+|.++...|++++|+..++++++.+
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            4566777777777788888877777776                344444555555555555555555555555555555


Q ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHH
Q 011845          111 GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAA  167 (476)
Q Consensus       111 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A  167 (476)
                      |.+..+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++.+++
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555555555555555555555444444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.42  E-value=3.1e-13  Score=102.83  Aligned_cols=92  Identities=20%  Similarity=0.231  Sum_probs=51.5

Q ss_pred             cCCHHHHHHHHHHHhhc---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHH
Q 011845           59 LGNIGKARELFDASTVA---DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARN  135 (476)
Q Consensus        59 ~g~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~  135 (476)
                      .|++++|+..|++++..   +|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            45555555566655555   355555555566666666666666666666655555555555555666555666666666


Q ss_pred             HHHHHHhcCCCchhH
Q 011845          136 LFRQATKCNPKSCAS  150 (476)
Q Consensus       136 ~~~~~~~~~p~~~~~  150 (476)
                      .+++++...|+++.+
T Consensus        83 ~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           83 LLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHCCCHHH
T ss_pred             HHHHHHHhCCCcHHH
Confidence            666555555555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.42  E-value=2.1e-12  Score=119.22  Aligned_cols=139  Identities=14%  Similarity=0.087  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845           80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM  159 (476)
Q Consensus        80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  159 (476)
                      ...+..+|..+...|++++|+..|+++++..+..+                  +...........|.+..++..+|.++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999987332110                  001122222334444455555555555


Q ss_pred             HhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011845          160 QQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLAR  236 (476)
Q Consensus       160 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  236 (476)
                      ..|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++.+++.
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555444443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.41  E-value=4.3e-13  Score=102.03  Aligned_cols=93  Identities=12%  Similarity=0.073  Sum_probs=64.8

Q ss_pred             hCCHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHH
Q 011845           93 QGNIKKARQLLAKGLKF---CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQ  169 (476)
Q Consensus        93 ~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~  169 (476)
                      .|++++|+..|+++++.   +|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            56677777777777777   466667777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCCcHHHH
Q 011845          170 LFERAVQASPKNRFAW  185 (476)
Q Consensus       170 ~~~~a~~~~~~~~~~~  185 (476)
                      .+++++...|+++.+.
T Consensus        83 ~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhCCCcHHHH
Confidence            7777777777766544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.41  E-value=1.6e-12  Score=101.44  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=57.9

Q ss_pred             HcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 011845           58 KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLF  137 (476)
Q Consensus        58 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  137 (476)
                      +.+.+++|+..++++++.+|+++++|+.+|.++...++++.+...+                        +.+++|+..|
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al------------------------~~~~eAi~~l   69 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK------------------------QMIQEAITKF   69 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH------------------------HHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH------------------------hHHHHHHHHH
Confidence            4556666777777777667777777766666666666543221111                        0134555555


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHcCCCcH
Q 011845          138 RQATKCNPKSCASWIAWSQMEMQQ-----------ENNLAARQLFERAVQASPKNR  182 (476)
Q Consensus       138 ~~~~~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~  182 (476)
                      +++++++|++..+|+.+|.+|...           |++++|+.+|+++++++|++.
T Consensus        70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            555555555555555555555444           366666666666666666654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.40  E-value=2.1e-12  Score=100.75  Aligned_cols=91  Identities=19%  Similarity=0.225  Sum_probs=66.0

Q ss_pred             HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 011845          126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN----------LAARQLFERAVQASPKNRFAWHVWGIFEANM  195 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  195 (476)
                      +.+.+++|+..++++++.+|+++++|..+|.++...+++          ++|+..|+++++++|++..+|+.+|.+|...
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            456677777777777777777777777777777776654          5888888888888888888888888888776


Q ss_pred             C-----------CHHHHHHHHHHHHhcCCCCH
Q 011845          196 G-----------FIDKGKKLLKIGHAVNPRDP  216 (476)
Q Consensus       196 ~-----------~~~~A~~~~~~~~~~~~~~~  216 (476)
                      |           ++++|+.+|+++++++|++.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            4           56666666666666666653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.37  E-value=6.5e-12  Score=101.34  Aligned_cols=100  Identities=13%  Similarity=0.082  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccC---CCChhHHH
Q 011845          218 LLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSID---STTESAAR  288 (476)
Q Consensus       218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~  288 (476)
                      ++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++...   .+......
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            34445555555555555555555544432211      2345556666666666666666666665542   12222234


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSLNIN  317 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~  317 (476)
                      .+..+|.++...|++++|..++++++++.
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.35  E-value=8.3e-12  Score=100.72  Aligned_cols=129  Identities=13%  Similarity=0.057  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH------HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc------HH
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI------AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN------EY  115 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~  115 (476)
                      ++..+|.++...|++++|+..+++++...+...      .++..+|.++...|++++|+..+++++...+..      ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            344444444444555555554444443322111      234444445555555555555554444432211      23


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845          116 IYQTLALLEAKANRYEQARNLFRQATKCNPK------SCASWIAWSQMEMQQENNLAARQLFERAVQ  176 (476)
Q Consensus       116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  176 (476)
                      ++..+|.++...|++++|+.++++++...+.      ...++..+|.++...|++++|+..++++++
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3444444455555555555555444433211      122344444444444444444444444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.20  E-value=2e-10  Score=86.74  Aligned_cols=81  Identities=11%  Similarity=0.039  Sum_probs=45.8

Q ss_pred             HHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 011845           65 ARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN  144 (476)
Q Consensus        65 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  144 (476)
                      |+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++...
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             C
Q 011845          145 P  145 (476)
Q Consensus       145 p  145 (476)
                      |
T Consensus        84 ~   84 (115)
T 2kat_A           84 Q   84 (115)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.20  E-value=2.5e-11  Score=91.08  Aligned_cols=92  Identities=10%  Similarity=-0.015  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHH
Q 011845          182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIA  255 (476)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~  255 (476)
                      ...+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|+++++.+|++      ..+++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555      555555


Q ss_pred             HHHHHHHcCChhHHHHHH
Q 011845          256 WGWMEWKEGNLDTARELY  273 (476)
Q Consensus       256 l~~~~~~~g~~~~A~~~~  273 (476)
                      +|.++...|+++.|+..+
T Consensus        84 ~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHhHhhhHhHH
Confidence            555555555555554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.20  E-value=1.4e-11  Score=92.40  Aligned_cols=90  Identities=14%  Similarity=0.091  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc------HHHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN------EYIYQTL  120 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l  120 (476)
                      ..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++      ..++..+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~   84 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL   84 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence            3444444444445555555555555544444444445555555555555555555555555544444      4444455


Q ss_pred             HHHHHHhccHHHHHHH
Q 011845          121 ALLEAKANRYEQARNL  136 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~  136 (476)
                      |.++...|+++.|+..
T Consensus        85 ~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           85 ELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHhHhhhHhH
Confidence            5555554444444433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.18  E-value=2.6e-10  Score=86.16  Aligned_cols=83  Identities=20%  Similarity=0.216  Sum_probs=62.8

Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 011845           98 KARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA  177 (476)
Q Consensus        98 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  177 (476)
                      +|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46677777777777777777777777777777777777777777777777777777777777777777777777777776


Q ss_pred             CCC
Q 011845          178 SPK  180 (476)
Q Consensus       178 ~~~  180 (476)
                      .|.
T Consensus        83 ~~~   85 (115)
T 2kat_A           83 AQS   85 (115)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.17  E-value=2.4e-10  Score=82.11  Aligned_cols=77  Identities=21%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE  124 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  124 (476)
                      .+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            33333444444444444444444444333333333344444444444444444444444433333333333333333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.16  E-value=3.7e-10  Score=81.07  Aligned_cols=81  Identities=17%  Similarity=0.263  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845           80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM  159 (476)
Q Consensus        80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  159 (476)
                      ..+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555444


Q ss_pred             H
Q 011845          160 Q  160 (476)
Q Consensus       160 ~  160 (476)
                      .
T Consensus        89 ~   89 (91)
T 1na3_A           89 K   89 (91)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.07  E-value=1.4e-09  Score=103.18  Aligned_cols=128  Identities=9%  Similarity=-0.065  Sum_probs=100.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHcc-----CCCChhHHH
Q 011845          222 LALLEYKYSTANLARKLFRRASEI-----DPRHQ---PVWIAWGWMEWKEGNLDTARELYERALSI-----DSTTESAAR  288 (476)
Q Consensus       222 la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~  288 (476)
                      .+..+..+|++++|+.++++++++     .|+++   .++.++|.+|..+|+|++|+.++++++.+     .|+++....
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            344466788888898888888765     34444   56778889999999999999999988875     688888888


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSLNI-----NSQSY---ITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      .+.++|.+|..+|++++|..+|++++++     .|+++   .+..+++.++..+|.+.+|..+|.++.+
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999998875     35554   4556777888888888888877776643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.06  E-value=1e-09  Score=104.17  Aligned_cols=130  Identities=11%  Similarity=0.041  Sum_probs=111.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCH---H
Q 011845          188 WGIFEANMGFIDKGKKLLKIGHAV-----NPRDP---VLLQSLALLEYKYSTANLARKLFRRASEI-----DPRHQ---P  251 (476)
Q Consensus       188 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~  251 (476)
                      .+..+..+|++++|+..+++++.+     .|+++   .++.++|.+|..+|++++|+.++++++.+     .|+++   .
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            344567889999999999999874     45555   46889999999999999999999999875     34554   5


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHcc-----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845          252 VWIAWGWMEWKEGNLDTARELYERALSI-----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN  317 (476)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  317 (476)
                      .+.++|.+|..+|++++|+.+|++++.+     .|+++....+...++.++..++.+++|...|.++.+..
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999875     79999999999999999999999999999999986543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.05  E-value=5.7e-10  Score=81.74  Aligned_cols=70  Identities=24%  Similarity=0.308  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845          212 NPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS  281 (476)
Q Consensus       212 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  281 (476)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++++.|
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            3555555555555555555555555555555555555555555555555555555555555555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.04  E-value=1.3e-09  Score=79.76  Aligned_cols=67  Identities=16%  Similarity=0.116  Sum_probs=29.7

Q ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845           77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKC  143 (476)
Q Consensus        77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  143 (476)
                      |+++.+++.+|.++...|++++|+..|+++++.+|.++.++..+|.+|...|++++|+..|++++++
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4444444444444444444444444444444444444444444444444444444444444444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.04  E-value=5.1e-10  Score=81.85  Aligned_cols=64  Identities=11%  Similarity=0.015  Sum_probs=28.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcHH-HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHIA-AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYI  116 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  116 (476)
                      |.++...|++++|+..|++++..+|.++. +++.+|.++...|++++|+..|+++++.+|++..+
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   71 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL   71 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence            44444444444444444444444444444 44444444444444444444444444444444433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.03  E-value=1e-08  Score=79.90  Aligned_cols=87  Identities=18%  Similarity=0.134  Sum_probs=36.6

Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK-  228 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-  228 (476)
                      +|.+|...+.+++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+.+.+|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            444444444444444444444433  233444444444444    34444444444444333  233444444444444 


Q ss_pred             ---cCCHHHHHHHHHHHhc
Q 011845          229 ---YSTANLARKLFRRASE  244 (476)
Q Consensus       229 ---~~~~~~A~~~~~~~~~  244 (476)
                         .+++++|+.+|+++.+
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHH
Confidence               3444444444444433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.02  E-value=7.8e-10  Score=80.85  Aligned_cols=88  Identities=18%  Similarity=0.137  Sum_probs=51.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEY-IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                      ..|.++...|++++|+..|+++++.+|.+.. ++..+|.++...|++++|+..|+++++.+|++..++..        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            4555666666666666666666666666666 66666666666666666666666666666666555432        44


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 011845          164 NLAARQLFERAVQASPK  180 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~~~  180 (476)
                      +.+++..|+++...+|+
T Consensus        77 ~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHhccCcc
Confidence            45555555555444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.01  E-value=2.2e-08  Score=85.52  Aligned_cols=106  Identities=14%  Similarity=0.052  Sum_probs=71.7

Q ss_pred             cCCCcHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q 011845          177 ASPKNRFAWHVWGIFEAN---M--G------FIDKGKKLLKIGHAVNPR--DPVLLQSLALLEYKY-----STANLARKL  238 (476)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~---~--~------~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----~~~~~A~~~  238 (476)
                      .+|++++.++..|.+...   .  |      ....|...++++++++|+  +..++..+|.+|...     |+.++|..+
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            345555555555444322   1  2      245677777777777777  455777777777774     777777777


Q ss_pred             HHHHhccCCCC-HHHHHHHHHHHHH-cCChhHHHHHHHHHHccCCC
Q 011845          239 FRRASEIDPRH-QPVWIAWGWMEWK-EGNLDTARELYERALSIDST  282 (476)
Q Consensus       239 ~~~~~~~~~~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~  282 (476)
                      |+++++++|+. ...++.+|..++. .|++++|..++++++...|.
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            77777777764 7777777777766 47777777777777777665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.01  E-value=1.3e-08  Score=86.90  Aligned_cols=108  Identities=15%  Similarity=0.098  Sum_probs=82.7

Q ss_pred             hcCCCCHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHc-----CChhHHHH
Q 011845          210 AVNPRDPVLLQSLALLEYK-----YST------ANLARKLFRRASEIDPR--HQPVWIAWGWMEWKE-----GNLDTARE  271 (476)
Q Consensus       210 ~~~~~~~~~~~~la~~~~~-----~~~------~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~  271 (476)
                      +.+|+++..++..|.+...     .|.      ...|...++++++++|+  +..+|..+|.+|...     |+.++|..
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            4567777777766655532     132      46788889999999998  667889999988884     89999999


Q ss_pred             HHHHHHccCCCC-hhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhCCCc
Q 011845          272 LYERALSIDSTT-ESAARCLQAWGVLEQR-VGNLSAARRLFRSSLNINSQS  320 (476)
Q Consensus       272 ~~~~a~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~  320 (476)
                      +|+++++++|+. ...   ++.+|..+.. .|++++|..++++++..+|..
T Consensus       226 ~ferAL~LnP~~~id~---~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDH---HITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHCCTTCSHH---HHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHhCCCCCchH---HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999999865 544   4455888877 488999999999999887663

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.99  E-value=9.9e-09  Score=80.01  Aligned_cols=109  Identities=15%  Similarity=0.144  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHH
Q 011845           61 NIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNL  136 (476)
Q Consensus        61 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~  136 (476)
                      ++++|+.+|+++.+...  +.+.  +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+
T Consensus        10 d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            45555555555554432  2222  555555555555555555555543  345555555555555    4555555555


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHH----hccHHHHHHHHHHHHHc
Q 011845          137 FRQATKCNPKSCASWIAWSQMEMQ----QENNLAARQLFERAVQA  177 (476)
Q Consensus       137 ~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~  177 (476)
                      |+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            5555543  344555555555555    45555555555555444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.98  E-value=2.7e-08  Score=88.90  Aligned_cols=148  Identities=8%  Similarity=-0.018  Sum_probs=71.7

Q ss_pred             CCChHHH--HHHHHHHHHcCC---HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHH
Q 011845           43 GENPYIW--QCWAVLENKLGN---IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY  117 (476)
Q Consensus        43 ~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  117 (476)
                      |.++.+|  +..|..+...++   ..+|+.+|+++++.+|++..++..++.++......             .|......
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~~~~~~~  257 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HPLDEKQL  257 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CCCchhhH
Confidence            5555444  334455554443   46777777777777777777777666666411000             00000000


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 011845          118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGF  197 (476)
Q Consensus       118 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  197 (476)
                                .....+... ..++...|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|+
T Consensus       258 ----------~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~  325 (372)
T 3ly7_A          258 ----------AALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM  325 (372)
T ss_dssp             ----------HHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC
T ss_pred             ----------HHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC
Confidence                      000111110 0122334555555555555555555555555555555555543 3444555555555555


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q 011845          198 IDKGKKLLKIGHAVNPRD  215 (476)
Q Consensus       198 ~~~A~~~~~~~~~~~~~~  215 (476)
                      +++|++.|.+++.++|..
T Consensus       326 ~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          326 NREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHHHHHHHhcCCCc
Confidence            555555555555555543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.97  E-value=1.6e-07  Score=89.97  Aligned_cols=160  Identities=13%  Similarity=0.099  Sum_probs=72.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCC---------HHHHHHHHHHHhhcC-cCcHHHHHHH
Q 011845           17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN---------IGKARELFDASTVAD-KGHIAAWHGW   86 (476)
Q Consensus        17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~~~~~-p~~~~~~~~l   86 (476)
                      ....+.+.|++++|+.+|+++.+.+-..+...|..+..++...+.         .++|.++|+++.... +.+..+|..+
T Consensus        32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l  111 (501)
T 4g26_A           32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG  111 (501)
T ss_dssp             HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            334445555555555555555444333444444444444433222         344555555444321 1133444444


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhccC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhccH
Q 011845           87 AVLELRQGNIKKARQLLAKGLKFC-GGNEYIYQTLALLEAKANRYEQARNLFRQATKCN-PKSCASWIAWSQMEMQQENN  164 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~  164 (476)
                      ...+.+.|++++|..+|+++.+.. ..+..+|..+...|.+.|+.++|.++|+++.+.. ..+...|..+...+.+.|+.
T Consensus       112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~  191 (501)
T 4g26_A          112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA  191 (501)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence            555555555555555555444331 2234444444445555555555555555544432 11333444444455555555


Q ss_pred             HHHHHHHHHHHH
Q 011845          165 LAARQLFERAVQ  176 (476)
Q Consensus       165 ~~A~~~~~~a~~  176 (476)
                      ++|..++++..+
T Consensus       192 d~A~~ll~~Mr~  203 (501)
T 4g26_A          192 DKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555544443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.93  E-value=5.4e-08  Score=86.96  Aligned_cols=151  Identities=12%  Similarity=0.011  Sum_probs=101.3

Q ss_pred             CcCcHHHHH--HHHHHHHHhCC---HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH
Q 011845           76 DKGHIAAWH--GWAVLELRQGN---IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS  150 (476)
Q Consensus        76 ~p~~~~~~~--~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  150 (476)
                      .|.++.+|-  ..|..+...++   ..+|+.+|+++++++|++..++..++.+|...             ....|.....
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~~~~~~  256 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHPLDEKQ  256 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSCCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCCCchhh
Confidence            444444332  34444444333   35666666666666666666666666655410             0001111110


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 011845          151 WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS  230 (476)
Q Consensus       151 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  230 (476)
                      ..          ....+... ..++...|.++.++..++..+...|++++|+..+++++.++| +...+..+|.++...|
T Consensus       257 ~~----------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G  324 (372)
T 3ly7_A          257 LA----------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKG  324 (372)
T ss_dssp             HH----------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTT
T ss_pred             HH----------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCC
Confidence            00          11222221 123456799999999999999999999999999999999997 5778899999999999


Q ss_pred             CHHHHHHHHHHHhccCCCCHH
Q 011845          231 TANLARKLFRRASEIDPRHQP  251 (476)
Q Consensus       231 ~~~~A~~~~~~~~~~~~~~~~  251 (476)
                      ++++|++.|.+++.++|..+.
T Consensus       325 ~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          325 MNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHH
T ss_pred             CHHHHHHHHHHHHhcCCCcCh
Confidence            999999999999999998753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.88  E-value=2.8e-07  Score=88.21  Aligned_cols=181  Identities=11%  Similarity=-0.013  Sum_probs=129.5

Q ss_pred             ChH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcC-cCcHHHHHHHHHHHHHhC---------CHHHHHHHHHHhhccC-CC
Q 011845           45 NPY-IWQCWAVLENKLGNIGKARELFDASTVAD-KGHIAAWHGWAVLELRQG---------NIKKARQLLAKGLKFC-GG  112 (476)
Q Consensus        45 ~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~~~~~-p~  112 (476)
                      .++ .+......+.+.|+.++|+.+|+++.... +.+..+|..+..++...+         ..++|.++|+++.... +.
T Consensus        24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P  103 (501)
T 4g26_A           24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP  103 (501)
T ss_dssp             CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence            344 35556677888999999999999887643 235566766666665443         3678888888877553 34


Q ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Q 011845          113 NEYIYQTLALLEAKANRYEQARNLFRQATKCN-PKSCASWIAWSQMEMQQENNLAARQLFERAVQAS-PKNRFAWHVWGI  190 (476)
Q Consensus       113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~  190 (476)
                      +..+|..+...|.+.|++++|..+|+++.+.. ..+..+|..+...|.+.|+.++|..+|++..+.. ..+...|..+..
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            67788888888888888888888888887653 2356778888888888888888888888887653 235567888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 011845          191 FEANMGFIDKGKKLLKIGHAV--NPRDPVLLQSLALLE  226 (476)
Q Consensus       191 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~  226 (476)
                      .+.+.|+.++|.++++++.+.  .| +..++..+...+
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F  220 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEWF  220 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHH
Confidence            888888888888888887654  33 344444443333

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.85  E-value=5.4e-08  Score=69.41  Aligned_cols=74  Identities=12%  Similarity=0.096  Sum_probs=51.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845          212 NPRDPVLLQSLALLEYKYST---ANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES  285 (476)
Q Consensus       212 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  285 (476)
                      +|+++.++..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|..+.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            46667777777777665544   567777777777777777777777777777777777777777777777766443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.73  E-value=1.4e-07  Score=72.75  Aligned_cols=85  Identities=7%  Similarity=-0.035  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011845          201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYS---TANLARKLFRRASEID-P-RHQPVWIAWGWMEWKEGNLDTARELYER  275 (476)
Q Consensus       201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~  275 (476)
                      +.+.|.+.+..++.+..+.+.+|+++.+.+   +.++++.+++.+++.+ | +..+.++.+|..+++.|+|++|+.++++
T Consensus        17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~   96 (152)
T 1pc2_A           17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG   96 (152)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            334444444444444445555555554444   3334555555544444 3 2344445555555555555555555555


Q ss_pred             HHccCCCChh
Q 011845          276 ALSIDSTTES  285 (476)
Q Consensus       276 a~~~~~~~~~  285 (476)
                      +++++|++..
T Consensus        97 lL~ieP~n~Q  106 (152)
T 1pc2_A           97 LLQTEPQNNQ  106 (152)
T ss_dssp             HHHHCTTCHH
T ss_pred             HHhcCCCCHH
Confidence            5555554433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.72  E-value=1.2e-07  Score=67.60  Aligned_cols=70  Identities=11%  Similarity=-0.122  Sum_probs=33.9

Q ss_pred             CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCC
Q 011845           43 GENPYIWQCWAVLENKLGN---IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG  112 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  112 (476)
                      |.++.++..+|.+++..++   .++|...+++++..+|+++.+++.+|..++..|++++|+..++++++.+|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4444445555544443333   344555555555555555555555555555555555555555555444444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.66  E-value=3.1e-07  Score=70.78  Aligned_cols=87  Identities=9%  Similarity=0.051  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHhc---cHHHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845          132 QARNLFRQATKCNPKSCASWIAWSQMEMQQE---NNLAARQLFERAVQAS-P-KNRFAWHVWGIFEANMGFIDKGKKLLK  206 (476)
Q Consensus       132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~  206 (476)
                      .+.+.|.+.+..++.+.++.+.+|.++.+.+   +.++++.+++.+++.+ | .+.+.++.+|..+.+.|+|++|+.+++
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3344444444444444445555555554444   3344555555544444 3 234444444544555555555555555


Q ss_pred             HHHhcCCCCHHH
Q 011845          207 IGHAVNPRDPVL  218 (476)
Q Consensus       207 ~~~~~~~~~~~~  218 (476)
                      ++++..|++..+
T Consensus        96 ~lL~ieP~n~QA  107 (152)
T 1pc2_A           96 GLLQTEPQNNQA  107 (152)
T ss_dssp             HHHHHCTTCHHH
T ss_pred             HHHhcCCCCHHH
Confidence            555555544443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.62  E-value=2.4e-07  Score=86.54  Aligned_cols=97  Identities=9%  Similarity=0.029  Sum_probs=80.5

Q ss_pred             HcCCHHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHcc-----CCCChhHHHHHHHHH
Q 011845          228 KYSTANLARKLFRRASEI-----DPRHQ---PVWIAWGWMEWKEGNLDTARELYERALSI-----DSTTESAARCLQAWG  294 (476)
Q Consensus       228 ~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~l~  294 (476)
                      ..|++++|+..+++++++     .|+++   ..+.++|.+|..+|+|++|+.++++++.+     .|+++.....+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457889999999998874     45554   56778999999999999999999999875     788888888999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhh-----CCCcHHHH
Q 011845          295 VLEQRVGNLSAARRLFRSSLNI-----NSQSYITW  324 (476)
Q Consensus       295 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~  324 (476)
                      .+|..+|++++|..+|++++++     .|+++.+.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            9999999999999999999876     46666543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.59  E-value=4.2e-07  Score=85.03  Aligned_cols=109  Identities=10%  Similarity=-0.049  Sum_probs=84.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHcc-----CCCChhHHHHH
Q 011845          224 LLEYKYSTANLARKLFRRASEI-----DPRHQ---PVWIAWGWMEWKEGNLDTARELYERALSI-----DSTTESAARCL  290 (476)
Q Consensus       224 ~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~  290 (476)
                      .-+..+|++++|+..+++++++     .|+++   .++.++|.+|..+|++++|+.++++++.+     .|+++.....+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3455778899999999988865     34444   56778899999999999999999998865     68888888889


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCcHH---HHHHHHHHHH
Q 011845          291 QAWGVLEQRVGNLSAARRLFRSSLNI-----NSQSYI---TWMTWAQLEE  332 (476)
Q Consensus       291 ~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~  332 (476)
                      .++|.+|...|++++|..+|++++++     .|+++.   ++.+++.+..
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999875     466654   3344554443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.56  E-value=5.2e-07  Score=66.14  Aligned_cols=79  Identities=15%  Similarity=0.092  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC----ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 011845          250 QPVWIAWGWMEWKEGNLDTARELYERALSIDST----TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWM  325 (476)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  325 (476)
                      +.-.+.+|..++..|+|..|+.+|+.+++..+.    ......++..+|.++.+.|+++.|+.++++++.+.|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            455677888888888888888888888776321    1223556788899999999999999999999999999888877


Q ss_pred             HHH
Q 011845          326 TWA  328 (476)
Q Consensus       326 ~l~  328 (476)
                      ++.
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            776

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.55  E-value=4.8e-07  Score=66.36  Aligned_cols=78  Identities=14%  Similarity=0.075  Sum_probs=54.7

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQ------GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      ++.-++.+|..++..|+|..|+..|+.+++..+      ...+.++..+|.++.+.|+++.|+..+++++..+|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            345567788888888888888888888776431      23456677777777777777777777777777777776665


Q ss_pred             HHHH
Q 011845           84 HGWA   87 (476)
Q Consensus        84 ~~la   87 (476)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            5554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.50  E-value=6.1e-07  Score=83.75  Aligned_cols=92  Identities=9%  Similarity=-0.024  Sum_probs=80.9

Q ss_pred             HcCChhHHHHHHHHHHcc-----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCcH---HHHHHHH
Q 011845          262 KEGNLDTARELYERALSI-----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI-----NSQSY---ITWMTWA  328 (476)
Q Consensus       262 ~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~  328 (476)
                      ..|+|++|+..+++++.+     .|+++....++.++|.+|..+|++++|..++++++++     .|+++   ..+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            468999999999999874     7899999999999999999999999999999999976     34444   5789999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhhhh
Q 011845          329 QLEEDQGNSVRAEEIRNLYFQQRTE  353 (476)
Q Consensus       329 ~~~~~~g~~~~A~~~~~~~~~~~~~  353 (476)
                      .+|..+|++++|..++++++.....
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~  414 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEV  414 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988875443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.49  E-value=2.6e-06  Score=79.70  Aligned_cols=97  Identities=12%  Similarity=-0.037  Sum_probs=84.0

Q ss_pred             HHHHHcCChhHHHHHHHHHHcc-----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCcH---HHH
Q 011845          258 WMEWKEGNLDTARELYERALSI-----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI-----NSQSY---ITW  324 (476)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~  324 (476)
                      .-+...|++++|+..+++++.+     .|+++....++.++|.+|..+|++++|+.++++++.+     .|+++   ..+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3455789999999999999975     6888888999999999999999999999999999976     34444   578


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhhhhh
Q 011845          325 MTWAQLEEDQGNSVRAEEIRNLYFQQRTEV  354 (476)
Q Consensus       325 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  354 (476)
                      +++|.+|..+|++++|..++++++......
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~  404 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVT  404 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998855443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.48  E-value=2.1e-06  Score=64.78  Aligned_cols=111  Identities=23%  Similarity=0.235  Sum_probs=77.3

Q ss_pred             ccCCCCchhHHHHHHHHHhcCCH------HHHHHHHHHhhccCCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845            5 DYWPEDGRPYVALGKVLSKQSKV------AEARAIYAKGSQATQGEN-------PYIWQCWAVLENKLGNIGKARELFDA   71 (476)
Q Consensus         5 ~~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~   71 (476)
                      -+.|+|++.|..........|+.      ++-+++|++++...||..       ..+|..+|.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            35678888888888877777887      777788888877664432       2344555544 445777777777777


Q ss_pred             HhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHH
Q 011845           72 STVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYI  116 (476)
Q Consensus        72 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  116 (476)
                      ++..+.....+|...|....++|+...|.+++.+++...|...+.
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            776666667777777777777777777777777777777765543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.35  E-value=2.1e-05  Score=59.33  Aligned_cols=53  Identities=25%  Similarity=0.278  Sum_probs=24.0

Q ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 011845          162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR  214 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  214 (476)
                      ++.++|...|+.++......+.+|...|....++|+...|..++.+++...|.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            44444444444444443333444444444444444444444444444444443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.25  E-value=1.7e-05  Score=58.70  Aligned_cols=85  Identities=7%  Similarity=-0.042  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011845          201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANL---ARKLFRRASEID-P-RHQPVWIAWGWMEWKEGNLDTARELYER  275 (476)
Q Consensus       201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~  275 (476)
                      +...|.+....++.+..+.+.+|+++....+...   ++.+++..+... | ..-+.++.+|..+++.|+|++|+.+++.
T Consensus        20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~   99 (126)
T 1nzn_A           20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG   99 (126)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3334444444444444555555555544444433   444555444443 2 2234444455555555555555555555


Q ss_pred             HHccCCCChh
Q 011845          276 ALSIDSTTES  285 (476)
Q Consensus       276 a~~~~~~~~~  285 (476)
                      +++..|++..
T Consensus       100 lL~~eP~n~Q  109 (126)
T 1nzn_A          100 LLQTEPQNNQ  109 (126)
T ss_dssp             HHHHCTTCHH
T ss_pred             HHHhCCCCHH
Confidence            5555555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.19  E-value=2.4e-05  Score=57.86  Aligned_cols=92  Identities=12%  Similarity=-0.069  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHhhcC-c-CcHHHHHHHHHHHHHhCCHHHHHH
Q 011845           27 VAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGK---ARELFDASTVAD-K-GHIAAWHGWAVLELRQGNIKKARQ  101 (476)
Q Consensus        27 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~la~~~~~~~~~~~A~~  101 (476)
                      ...+...|.+....+ +.+..+.+.+|.++.+..+...   ++.+++.++..+ | ..-+.++.+|..+++.|+|.+|+.
T Consensus        17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            344455555554444 4566666666666666665554   666666666654 3 344566666666666666666666


Q ss_pred             HHHHhhccCCCcHHHHHH
Q 011845          102 LLAKGLKFCGGNEYIYQT  119 (476)
Q Consensus       102 ~~~~~~~~~p~~~~~~~~  119 (476)
                      +++.+++..|++..+...
T Consensus        96 ~~~~lL~~eP~n~QA~~L  113 (126)
T 1nzn_A           96 YVRGLLQTEPQNNQAKEL  113 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHH
Confidence            666666666666555433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.88  E-value=6e-05  Score=58.38  Aligned_cols=61  Identities=10%  Similarity=-0.122  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---------HHHHHHHHHHHHHhCCHHHHHHHHHHhhc
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVADKGH---------IAAWHGWAVLELRQGNIKKARQLLAKGLK  108 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~  108 (476)
                      +++.-...+...|.|+.|+-....++....++         ..++..+|.+++..++|..|...|+++++
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            33444445555555555555555544322111         12445556666666666666666655543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.87  E-value=0.00021  Score=55.41  Aligned_cols=134  Identities=5%  Similarity=-0.100  Sum_probs=82.7

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC---cC
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN---------PYIWQCWAVLENKLGNIGKARELFDASTVAD---KG   78 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~   78 (476)
                      -.+++.-...++..|.|+.|+-....++... ..+         ..++..+|..++..|+|..|...|+++++..   +.
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            3466777888999999999999999877543 222         2377889999999999999999999997532   22


Q ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 011845           79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQME  158 (476)
Q Consensus        79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  158 (476)
                      .......++.    ......       .... +.+.++.+.++.||...+++++|+..++.+-.. ...+.+...+|.+|
T Consensus        99 ~~s~~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           99 TSKVRPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred             CCCccccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence            2211111110    000000       0111 345567777888888888888888777654222 23455666666654

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.77  E-value=0.034  Score=54.16  Aligned_cols=310  Identities=10%  Similarity=-0.029  Sum_probs=155.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHhhcCcCcHHHHH---HHHH
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG--NIGKARELFDASTVADKGHIAAWH---GWAV   88 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~---~la~   88 (476)
                      .+.-+...+..|++..+......+ ... |-  ..+.....+....+  ...+    +...+...|+.+..-.   ..-.
T Consensus         9 ~~~~a~~a~~~~~~~~~~~l~~~l-~~~-pL--~~yl~y~~l~~~l~~~~~~e----v~~Fl~~~~~~p~~~~Lr~~~l~   80 (618)
T 1qsa_A            9 RYAQIKQAWDNRQMDVVEQMMPGL-KDY-PL--YPYLEYRQITDDLMNQPAVT----VTNFVRANPTLPPARTLQSRFVN   80 (618)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHSGGG-TTS-TT--HHHHHHHHHHHTGGGCCHHH----HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhh-cCC-Cc--HHHHHHHHHHhCcccCCHHH----HHHHHHHCCCChhHHHHHHHHHH
Confidence            456667778889998777665543 222 33  23333333333333  3443    3344455676664433   2333


Q ss_pred             HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc------
Q 011845           89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE------  162 (476)
Q Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~------  162 (476)
                      .+.+.+++..-+.++..    .|.+....+..+......|+..+|.....++.......+.....+...+...|      
T Consensus        81 ~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~  156 (618)
T 1qsa_A           81 ELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLA  156 (618)
T ss_dssp             HHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHH
Confidence            34457788777665543    37888888888888999999888888888877666555554444444444333      


Q ss_pred             ------------cHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHH
Q 011845          163 ------------NNLAARQLFERAVQASPKNRFAW-HVWGIFEANMGFIDKGKKLLKIGHAVNPRDP-VLLQSLALLEYK  228 (476)
Q Consensus       163 ------------~~~~A~~~~~~a~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~  228 (476)
                                  +...|..+...    -|.+...+ ..+..++   .+..........   ..+... .....++.....
T Consensus       157 ~~~R~~~al~~~~~~~a~~l~~~----l~~~~~~~a~~~~al~---~~p~~~~~~~~~---~~~~~~~~~~~~~~~~rla  226 (618)
T 1qsa_A          157 YLERIRLAMKAGNTGLVTVLAGQ----MPADYQTIASAIISLA---NNPNTVLTFART---TGATDFTRQMAAVAFASVA  226 (618)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT----CCGGGHHHHHHHHHHH---HCGGGHHHHHHH---SCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHh----CCHHHHHHHHHHHHHH---hChHhHHHHHhc---cCCChhhHHHHHHHHHHHH
Confidence                        33333222111    11111000 0011110   111111111100   011111 112222333333


Q ss_pred             cCCHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHH
Q 011845          229 YSTANLARKLFRRASEIDPRHQP----VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLS  304 (476)
Q Consensus       229 ~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~  304 (476)
                      ..+.+.|...+.......+-+..    .+..++.-+...+...++...+.+......++ ...+..   +......|+++
T Consensus       227 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~---~r~Alr~~d~~  302 (618)
T 1qsa_A          227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERR---VRMALGTGDRR  302 (618)
T ss_dssp             HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHH---HHHHHHHTCHH
T ss_pred             hcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHH---HHHHHHCCCHH
Confidence            44667777777665443322222    11222222233343456666666654433322 222222   22334567777


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          305 AARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       305 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      .|..+|..+-..........+.+|+.+...|+.++|..+|+.+..
T Consensus       303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            777777765443334556677777777777777777777776654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.60  E-value=0.0017  Score=48.11  Aligned_cols=81  Identities=6%  Similarity=-0.058  Sum_probs=63.6

Q ss_pred             CCChHHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHH
Q 011845           43 GENPYIWQCWAVLENKLGNI---GKARELFDASTVADKG-HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQ  118 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  118 (476)
                      ..++.+.+.+|.++.+..+.   .+++.+++.++..+|. .-+.++.+|..+++.|+|.+|.++.+.+++..|++..+..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            45778888888888887654   4688888888887774 4678888888899999999999999999998888877665


Q ss_pred             HHHHH
Q 011845          119 TLALL  123 (476)
Q Consensus       119 ~la~~  123 (476)
                      ....+
T Consensus       117 Lk~~I  121 (134)
T 3o48_A          117 LKSMV  121 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.59  E-value=0.0032  Score=47.38  Aligned_cols=73  Identities=11%  Similarity=0.026  Sum_probs=45.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHH---HHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845          214 RDPVLLQSLALLEYKYSTAN---LARKLFRRASEIDPR-HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA  286 (476)
Q Consensus       214 ~~~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  286 (476)
                      .++.+.+++|+++....+..   +++.+++..+...|. .-+.++.+|..+++.|+|++|+.+.+.+++..|++..+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            35566666666666655443   466666666665553 33566666666666666666666666666666666554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.57  E-value=0.0011  Score=49.20  Aligned_cols=72  Identities=10%  Similarity=0.013  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845          215 DPVLLQSLALLEYKYSTA---NLARKLFRRASEIDPR-HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA  286 (476)
Q Consensus       215 ~~~~~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  286 (476)
                      ++.+.+++|+++.+..+.   .+++.+++..++..|. .-+.++.+|..+.+.|+|++|+.+.+.+++..|++..+
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            456666777777666544   3566677766666663 34666777777777777777777777777777777554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.43  E-value=0.0039  Score=46.90  Aligned_cols=78  Identities=6%  Similarity=-0.084  Sum_probs=57.5

Q ss_pred             CCChHHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHH
Q 011845           43 GENPYIWQCWAVLENKLGNI---GKARELFDASTVADKG-HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQ  118 (476)
Q Consensus        43 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  118 (476)
                      ..++.+.+.+|.++.+..+.   .+++.+++.++...|. .-+.++.+|..+++.|+|.+|..+.+.+++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45677788888888776654   4677788887777663 4577778888888888888888888888888887776554


Q ss_pred             HH
Q 011845          119 TL  120 (476)
Q Consensus       119 ~l  120 (476)
                      ..
T Consensus       116 Lk  117 (144)
T 1y8m_A          116 LK  117 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.26  E-value=0.16  Score=49.42  Aligned_cols=144  Identities=9%  Similarity=-0.072  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011845          198 IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL  277 (476)
Q Consensus       198 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  277 (476)
                      ..++...+.+...... +.......+......|+++.|...|..+-......+...+-+|.++...|+.++|..+|+++.
T Consensus       268 ~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          268 TDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             CHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3344444444433222 222222333333445666666666655444333344555556666666666666666665554


Q ss_pred             ccC-----------------------CCChh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 011845          278 SID-----------------------STTES--AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEE  332 (476)
Q Consensus       278 ~~~-----------------------~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  332 (476)
                      ...                       +....  ...-....+..+...|....|...+...+...  +..-...++.+..
T Consensus       347 ~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~  424 (618)
T 1qsa_A          347 QQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAF  424 (618)
T ss_dssp             TSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred             cCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence            310                       00000  01112344667788899999988888777542  2344456777778


Q ss_pred             HcCChHHHHHHH
Q 011845          333 DQGNSVRAEEIR  344 (476)
Q Consensus       333 ~~g~~~~A~~~~  344 (476)
                      ..|.+..++...
T Consensus       425 ~~~~~~~~v~~~  436 (618)
T 1qsa_A          425 NNQWWDLSVQAT  436 (618)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HCCChHHHHHHH
Confidence            888888776543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.24  E-value=0.017  Score=52.62  Aligned_cols=166  Identities=10%  Similarity=-0.042  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH-----HHHHHHHHHH-hccHHHHHHHHHHHHHcCCCcHH----
Q 011845          114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS-----WIAWSQMEMQ-QENNLAARQLFERAVQASPKNRF----  183 (476)
Q Consensus       114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~----  183 (476)
                      ..+...+|.+|...|++++-.+++.......+.-+.+     ...+...+.. .+..+.-++++..+++...+.-.    
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999998888888765554433332     2233333322 23344445555555543222111    


Q ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCCH--
Q 011845          184 --AWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--D----PVLLQSLALLEYKYSTANLARKLFRRASEID---PRHQ--  250 (476)
Q Consensus       184 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~--  250 (476)
                        +-..++.+|...|+|.+|...+.+.......  +    .+++..-..+|...+++.++...+.++....   +.+|  
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence              2236677777777777777777766653221  1    2345555666777777777777777765432   1222  


Q ss_pred             --HHHHHHHHHHH-HcCChhHHHHHHHHHHcc
Q 011845          251 --PVWIAWGWMEW-KEGNLDTARELYERALSI  279 (476)
Q Consensus       251 --~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~  279 (476)
                        .+...-|.++. ..++|..|...|-.++..
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence              23344566666 677777777777776543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.22  E-value=0.045  Score=42.17  Aligned_cols=158  Identities=13%  Similarity=-0.018  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhc--c---------------
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLK--F---------------  109 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~---------------  109 (476)
                      +.-..++.+++-.|.+..++-++...     +...+.+..+.|+.+.+++..|+..++..+.  .               
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            44444555555555555555554432     3344444555555555666666655555552  1               


Q ss_pred             CCCcHH-HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH------------------------------HHHHHHHH
Q 011845          110 CGGNEY-IYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS------------------------------WIAWSQME  158 (476)
Q Consensus       110 ~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------------------------------~~~la~~~  158 (476)
                      +|.+.+ .+..+|.++...|+.++|+.++.......|-.+.+                              +......+
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lH  188 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFH  188 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHH
Confidence            122222 34455566666666666666665555443322111                              11111111


Q ss_pred             HHhccHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 011845          159 MQQENNLAARQLFERAVQASPKNRFA-WHVWGIFEANMGFIDKGKKLLKIGHAVNPR  214 (476)
Q Consensus       159 ~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  214 (476)
                      .....     ...++-...-|.-... ....+..+...|-.++...+|...-..+|.
T Consensus       189 e~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          189 ESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence            11111     3344444455654332 234566777788888888888877777764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.18  E-value=0.046  Score=55.84  Aligned_cols=45  Identities=11%  Similarity=0.104  Sum_probs=23.5

Q ss_pred             HHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845          159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIG  208 (476)
Q Consensus       159 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  208 (476)
                      ...|++++|.+..+.     .++...|..+|..+...++++.|+.+|.++
T Consensus       663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            445555555554321     234455555666666666666555555543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.0065  Score=60.18  Aligned_cols=116  Identities=13%  Similarity=0.090  Sum_probs=85.0

Q ss_pred             HcCC-HHHHHHHHHHHhhcCcCcHHHHHHHHHHHH--H-hCCHHHHHHHHHHhhcc--------CCCc----------HH
Q 011845           58 KLGN-IGKARELFDASTVADKGHIAAWHGWAVLEL--R-QGNIKKARQLLAKGLKF--------CGGN----------EY  115 (476)
Q Consensus        58 ~~g~-~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--~-~~~~~~A~~~~~~~~~~--------~p~~----------~~  115 (476)
                      ..|+ ++.|+..+++....+|.....+ ..+.+..  . ..+--+|+.++.+.++.        .+.+          ..
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  338 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD  338 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence            3455 6889999999998888654322 2222221  1 23455677777776632        2222          23


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845          116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA  174 (476)
Q Consensus       116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  174 (476)
                      .+..-+..+...|+++-|+++.++++...|.....|..|+.+|...|+|+.|+-.++.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45556777888999999999999999999999999999999999999999999887765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.88  E-value=0.14  Score=52.12  Aligned_cols=98  Identities=14%  Similarity=0.023  Sum_probs=65.8

Q ss_pred             HHHhccHHHHHH-HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 011845          124 EAKANRYEQARN-LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK  202 (476)
Q Consensus       124 ~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  202 (476)
                      ....+++++|.. ++.    .-|+ ......++..+...|.+++|+...+        ++...   .......|++++|.
T Consensus       609 ~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~  672 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLAR  672 (814)
T ss_dssp             HHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHH
T ss_pred             HHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHH
Confidence            345677777765 331    1110 1222556667777888887776542        22222   23456789999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845          203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA  242 (476)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  242 (476)
                      +..+.     .+++..|..+|..+...++++.|+.+|.++
T Consensus       673 ~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          673 DLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            87643     357889999999999999999999999886

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.028  Score=55.75  Aligned_cols=57  Identities=12%  Similarity=-0.065  Sum_probs=33.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845          186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA  242 (476)
Q Consensus       186 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  242 (476)
                      ..-+..+...|+++-|+.+.++++...|.+...|..|+.+|...|+++.|+-.+..+
T Consensus       341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            333455555566666666666666666666666666666666666666665555544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.71  E-value=0.34  Score=44.09  Aligned_cols=93  Identities=13%  Similarity=-0.055  Sum_probs=58.1

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHH----HH
Q 011845          153 AWSQMEMQQENNLAARQLFERAVQASPK------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN---PRDPV----LL  219 (476)
Q Consensus       153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~----~~  219 (476)
                      .+|.+|...|++.+|...+.+..+....      -.+++..-..+|...+++.++...+.++....   +.+|.    ..
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            5677777777777777777666653211      13455566667777777777777777665432   12232    33


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHhcc
Q 011845          220 QSLALLEY-KYSTANLARKLFRRASEI  245 (476)
Q Consensus       220 ~~la~~~~-~~~~~~~A~~~~~~~~~~  245 (476)
                      ..-|.++. ..++|..|...|-++++.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            44566667 678888887777777643

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.39  Score=44.92  Aligned_cols=50  Identities=14%  Similarity=0.089  Sum_probs=28.2

Q ss_pred             CCHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845           94 GNIKKARQLLAKGLKF------CGGNEYIYQTLALLEAKANRYEQARNLFRQATKC  143 (476)
Q Consensus        94 ~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  143 (476)
                      |++.+|++.+....+.      .+....+...+..++...|+++...+.+.-..+.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk   85 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK   85 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            5666676665333221      1233556666677777777777666655544433

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.53  E-value=0.063  Score=54.59  Aligned_cols=98  Identities=13%  Similarity=0.033  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhcc----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCchhHHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKF----CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN-PKSCASWIAWS  155 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la  155 (476)
                      ..+..+...|.+.|+.++|..+|..+.+.    ...+..+|..+...|.+.|+.++|.++|+++.... ..+..+|..+.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            34566677777777777777777554322    23456677777777777777777777777776554 23455666666


Q ss_pred             HHHHHhccH-HHHHHHHHHHHHcC
Q 011845          156 QMEMQQENN-LAARQLFERAVQAS  178 (476)
Q Consensus       156 ~~~~~~~~~-~~A~~~~~~a~~~~  178 (476)
                      .++.+.|+. ++|..+|+++....
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcC
Confidence            677776663 56667777766643

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.092  Score=41.45  Aligned_cols=99  Identities=14%  Similarity=0.135  Sum_probs=49.4

Q ss_pred             HHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 011845           57 NKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNL  136 (476)
Q Consensus        57 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  136 (476)
                      .+.|+++.|.++.+.+     ++...|..+|......|+++-|..+|.++-..        ..+..+|...|+.+.-...
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHHH
Confidence            3456666666665543     34556666666666666666666666665321        2333344445555444433


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845          137 FRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFER  173 (476)
Q Consensus       137 ~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  173 (476)
                      -+.+......     .....++...|++++++++|.+
T Consensus        83 a~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           83 QNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence            3333222111     1122334455666666555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.50  E-value=0.066  Score=54.46  Aligned_cols=98  Identities=9%  Similarity=-0.049  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC-CCcHHHHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVA----DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC-GGNEYIYQTLA  121 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la  121 (476)
                      ..+..+...+++.|+.++|..+|..+...    ..-+...|..+...+.+.|+.++|.++|+++.+.. ..+..+|..+.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            35778888999999999999999775432    23467888899999999999999999999987653 35777888888


Q ss_pred             HHHHHhcc-HHHHHHHHHHHHhcC
Q 011845          122 LLEAKANR-YEQARNLFRQATKCN  144 (476)
Q Consensus       122 ~~~~~~g~-~~~A~~~~~~~~~~~  144 (476)
                      .++.+.|+ .++|..+|+++....
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcC
Confidence            88988887 478889999988765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.32  Score=38.41  Aligned_cols=99  Identities=11%  Similarity=0.078  Sum_probs=54.6

Q ss_pred             HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHH
Q 011845          227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAA  306 (476)
Q Consensus       227 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  306 (476)
                      ...|+++.|.++.+..     ++...|..+|......|+++-|..+|.++-.           +..+..+|.-.|+.+.-
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHHHH
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHHHH
Confidence            5566777776665544     4566777777777777777777777766521           12234455556665554


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845          307 RRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNL  346 (476)
Q Consensus       307 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  346 (476)
                      ...-+.+......     .....++...|+++++.+++..
T Consensus        80 ~kla~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           80 SKMQNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence            4444443322211     1122345566677776666543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.17  E-value=0.081  Score=44.71  Aligned_cols=66  Identities=14%  Similarity=0.123  Sum_probs=50.8

Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHH
Q 011845          225 LEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL  290 (476)
Q Consensus       225 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  290 (476)
                      .+.+.|+.++|+..+...++..|.+......+..+++-.|+++.|..-++.+.+++|+.......|
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y   71 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   71 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            345677888888888888888888888888888888888888888888888888888765543333

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.05  E-value=0.85  Score=46.34  Aligned_cols=184  Identities=12%  Similarity=0.077  Sum_probs=78.5

Q ss_pred             cCCHHHHHHHHHHhhccCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc---C---cH----HHHHHHHHH
Q 011845           24 QSKVAEARAIYAKGSQATQGEN----PYIWQCWAVLENKLGNIGKARELFDASTVADK---G---HI----AAWHGWAVL   89 (476)
Q Consensus        24 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~---~~----~~~~~la~~   89 (476)
                      .|+.++++..+.+.+......+    ..+.+.+|.++...+  .+++..+...+..+.   .   ..    .+...+|.+
T Consensus       387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            4555566666665543110111    123333444433333  356666655554221   0   11    233355555


Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHH
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGN--EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAA  167 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A  167 (476)
                      +.-.++ +++.+.+...+..+...  ..+-+.+|.++.-.|+-+....++..+.+...+...-...+|..+...|+.+.+
T Consensus       465 ~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~  543 (963)
T 4ady_A          465 AMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA  543 (963)
T ss_dssp             STTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred             hcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence            554444 34445555554432211  123345556666666655555555554443222222222233333344555544


Q ss_pred             HHHHHHHHHcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845          168 RQLFERAVQASPKNR--FAWHVWGIFEANMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       168 ~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~  210 (476)
                      -.+.+..........  .+-..+|..|...|+......++..+..
T Consensus       544 ~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~  588 (963)
T 4ady_A          544 DDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS  588 (963)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence            444444333211111  1123345555566665444445555543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.00  E-value=1.2  Score=47.29  Aligned_cols=191  Identities=12%  Similarity=-0.024  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------
Q 011845          151 WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN------------------  212 (476)
Q Consensus       151 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------  212 (476)
                      ...+...+...+.++-+..    .+...|.++...+.+|.++...|++++|..+|+++-.-.                  
T Consensus       815 ~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence            3345555666777766554    334567777777899999999999999999998873211                  


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCH----HHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845          213 -----PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP-RHQ----PVWIAWGWMEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       213 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                           ...+..|..+..++.+.+.++.+++..+.+++..+ ++.    ..|..+-..+...|+|++|...+...-..   
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---  967 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---  967 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---
Confidence                 11234567788888899999999999999987654 332    26777888889999999998887654322   


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHH------------HHHHHHH-HHhh-CCCc-HHHHHHHHHHHHHcCChHHHHHH-HHH
Q 011845          283 TESAARCLQAWGVLEQRVGNLSA------------ARRLFRS-SLNI-NSQS-YITWMTWAQLEEDQGNSVRAEEI-RNL  346 (476)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~-al~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~-~~~  346 (476)
                       .....++..+....++.|..+.            -.+++.. |-.. ++.+ +..+..|-..+...|++..|..+ |+.
T Consensus       968 -~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B          968 -PLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp             -SSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence             2223455555555555555433            2223321 1111 2222 23344455666778888877665 554


Q ss_pred             HHh
Q 011845          347 YFQ  349 (476)
Q Consensus       347 ~~~  349 (476)
                      +.+
T Consensus      1047 ~~R 1049 (1139)
T 4fhn_B         1047 LSR 1049 (1139)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.91  E-value=0.09  Score=44.46  Aligned_cols=122  Identities=11%  Similarity=-0.012  Sum_probs=71.4

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHH
Q 011845          192 EANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARE  271 (476)
Q Consensus       192 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (476)
                      +.+.|..++|+..+...++.+|.+......+..+++-.|++++|..-++.+.+++|.....-..+-.+.       .|..
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE~   79 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAAQ   79 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHHH
Confidence            456677888888888888888888888888888888888888888888888888876543221111110       0111


Q ss_pred             HHHHHHcc-----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 011845          272 LYERALSI-----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS  320 (476)
Q Consensus       272 ~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  320 (476)
                      .=.+.+.-     .+..+..+.....-+......|+.++|...-.++++..|..
T Consensus        80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence            11111111     11222222223333455555677777777777776665543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.90  E-value=1.1  Score=41.76  Aligned_cols=186  Identities=6%  Similarity=-0.042  Sum_probs=85.3

Q ss_pred             cCCHHHHHHHHHHhhcc-----CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH---HH-HhC
Q 011845           24 QSKVAEARAIYAKGSQA-----TQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL---EL-RQG   94 (476)
Q Consensus        24 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~---~~-~~~   94 (476)
                      .|++++|++.+....+.     +.+....+...+..++...|+++...+.+.-..........+...+...   +. ...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            36677777766443321     1133455666777777788888777666655443322222222211111   11 112


Q ss_pred             CHH--HHHHHHHHhhccCCC-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--C----chhHHHHHHHHHH
Q 011845           95 NIK--KARQLLAKGLKFCGG-------NEYIYQTLALLEAKANRYEQARNLFRQATKCNP--K----SCASWIAWSQMEM  159 (476)
Q Consensus        95 ~~~--~A~~~~~~~~~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~----~~~~~~~la~~~~  159 (476)
                      ..+  .-+...+.......+       ...+...++.+|...|++.+|...+.....-.-  .    -.+.+....+++.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            111  111111111111111       123445566666666666666666665542110  0    1234455555566


Q ss_pred             HhccHHHHHHHHHHHHH---cCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845          160 QQENNLAARQLFERAVQ---ASPKNR----FAWHVWGIFEANMGFIDKGKKLLKIGH  209 (476)
Q Consensus       160 ~~~~~~~A~~~~~~a~~---~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~  209 (476)
                      ..+++.+|...+.++..   ..+..+    ..+...|.++...++|.+|-.+|..++
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            66666666655555421   112111    233444555555555555555554444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.87  E-value=0.16  Score=46.50  Aligned_cols=61  Identities=11%  Similarity=-0.112  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      ++..++..+...|++.+|+..+..++..+|-+..++..+..++...|+..+|...|+.+..
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455678888999999999999999999999999999999999999999999999988866

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.83  E-value=0.46  Score=36.73  Aligned_cols=53  Identities=15%  Similarity=0.012  Sum_probs=24.8

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT  141 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  141 (476)
                      ..++.+++-.|.+..++-.+...     +.....+.-+.||....++..|+..++..+
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il   89 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESIL   89 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555554444322     223334444445555555555555555554

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.61  Score=43.74  Aligned_cols=126  Identities=12%  Similarity=0.054  Sum_probs=57.0

Q ss_pred             HHHHHhccHHHHHHHHHHHHh---c--------CCCchhHHHHHHHHHHHhccHHHH----------HHHHHHHHHc---
Q 011845          122 LLEAKANRYEQARNLFRQATK---C--------NPKSCASWIAWSQMEMQQENNLAA----------RQLFERAVQA---  177 (476)
Q Consensus       122 ~~~~~~g~~~~A~~~~~~~~~---~--------~p~~~~~~~~la~~~~~~~~~~~A----------~~~~~~a~~~---  177 (476)
                      ..+...+++++|..+-...+.   +        ++-...+|+.++.++...|+....          ...+-.++..   
T Consensus       144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l  223 (523)
T 4b4t_S          144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL  223 (523)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence            344567788888877665541   1        223345677777777777765542          2233333322   


Q ss_pred             --CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 011845          178 --SPK-NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD-------PVLLQSLALLEYKYSTANLARKLFRRASEIDP  247 (476)
Q Consensus       178 --~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  247 (476)
                        ++. ...++..+...|...+.+++|..+..++.  .|..       ...++.+|.++...++|.+|.+.+..++...|
T Consensus       224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence              222 25677888889999999999999999885  3422       33567789999999999999999999998877


Q ss_pred             CC
Q 011845          248 RH  249 (476)
Q Consensus       248 ~~  249 (476)
                      .+
T Consensus       302 ~~  303 (523)
T 4b4t_S          302 HN  303 (523)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.36  E-value=0.31  Score=44.64  Aligned_cols=111  Identities=12%  Similarity=0.024  Sum_probs=76.6

Q ss_pred             HHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHH-HHHHHHHHhcCCCchhHHHHHHHHHHHhccHH
Q 011845           87 AVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQA-RNLFRQATKCNPKSCASWIAWSQMEMQQENNL  165 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~  165 (476)
                      |......|+.+.|...+.+++.+.....-.-  ..     ...|-.+ ...+++.      ...+...++..+...|++.
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~  188 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGRAS  188 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHH
Confidence            3334456899999999999988753221100  00     0111111 1111111      1234556778888999999


Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845          166 AARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA  210 (476)
Q Consensus       166 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  210 (476)
                      +++..+..++..+|-+..++..+..++...|+..+|+..|+++..
T Consensus       189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.29  E-value=0.53  Score=49.99  Aligned_cols=61  Identities=13%  Similarity=-0.074  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-h----hHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845          114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKS-C----ASWIAWSQMEMQQENNLAARQLFERA  174 (476)
Q Consensus       114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~----~~~~~la~~~~~~~~~~~A~~~~~~a  174 (476)
                      +..|..+..++.+.+.++.+++..+.+++..+.+ .    ..|..+-..+...|+|++|...+...
T Consensus       899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            4455666666777777777777777776654322 1    14555666666677777776665443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.59  E-value=0.18  Score=47.04  Aligned_cols=99  Identities=16%  Similarity=0.101  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc---CCCChhHHHHHH
Q 011845          218 LLQSLALLEYKYSTANLARKLFRRASEIDP---RHQPVWIAWGWMEWKEGNLDTARELYERALSI---DSTTESAARCLQ  291 (476)
Q Consensus       218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~  291 (476)
                      ++..+|..+...|++++|.+.|.++.....   .....+.....++...+++..+...+.++...   .++......+..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            344444444444554444444444443221   12244445555555555555555555555332   122211122233


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845          292 AWGVLEQRVGNLSAARRLFRSSLNI  316 (476)
Q Consensus       292 ~l~~~~~~~g~~~~A~~~~~~al~~  316 (476)
                      ..|.++...++|.+|...|-.++..
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence            3355555666666666666665544

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.57  E-value=0.26  Score=46.20  Aligned_cols=177  Identities=8%  Similarity=0.066  Sum_probs=74.5

Q ss_pred             HHHHhccHHHHHHHHHHHHH---c--------CCCcHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHh-----
Q 011845          157 MEMQQENNLAARQLFERAVQ---A--------SPKNRFAWHVWGIFEANMGFIDKG----------KKLLKIGHA-----  210 (476)
Q Consensus       157 ~~~~~~~~~~A~~~~~~a~~---~--------~~~~~~~~~~l~~~~~~~~~~~~A----------~~~~~~~~~-----  210 (476)
                      .+...+++++|..+-...+.   +        ++-...+|+.++.++...|+....          +..+-.+++     
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            45567888888877765541   1        223356677777777777766542          222222222     


Q ss_pred             cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845          211 VNPR-DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH-------QPVWIAWGWMEWKEGNLDTARELYERALSIDST  282 (476)
Q Consensus       211 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  282 (476)
                      .++. ...++..+-+.|...+.+++|..+..++.  .|..       ...++.+|.++...++|.+|.+++..|+...|.
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~  302 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH  302 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            1221 14466777888888888888888888875  3321       245567788888888888888888888888775


Q ss_pred             Chh----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCChHHHHH
Q 011845          283 TES----AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS---YITWMTWAQLEEDQGNSVRAEE  342 (476)
Q Consensus       283 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~  342 (476)
                      +..    ...++..+..+-.-+|+..+- ..|.     .+..   ...|..++.++ +.|+...-..
T Consensus       303 ~~~a~gfr~~a~K~lI~V~LLlG~iP~r-~lf~-----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~  362 (523)
T 4b4t_S          303 NSKSLGFLQQSNKLHCCIQLLMGDIPEL-SFFH-----QSNMQKSLLPYYHLTKAV-KLGDLKKFTS  362 (523)
T ss_dssp             SSSCSHHHHHHHHHHHHHHHHHTCCCCH-HHHT-----TTSCHHHHHHHHHHHHHH-HHTCHHHHHH
T ss_pred             chhhhhHHHHHHHHHHhHHhhcCCCCCh-HHhh-----chhHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence            532    122222233333345665431 1111     1222   12355566664 5677655333

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.53  E-value=2.1e-06  Score=78.16  Aligned_cols=203  Identities=13%  Similarity=0.121  Sum_probs=105.0

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHH
Q 011845            9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAV   88 (476)
Q Consensus         9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~   88 (476)
                      +.+.+|..+|.+++..|...+|++.|-++      .|+..+........+.|.+++-+.++.-+-+. -..+.+=..+..
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~  124 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIF  124 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHH
Confidence            56788999999999999999888877654      34444555566667788888888888776543 233333345566


Q ss_pred             HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---------------------CCCc
Q 011845           89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKC---------------------NPKS  147 (476)
Q Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------~p~~  147 (476)
                      +|.+.++..+-.+++.     .|+... ....|.-++..|.|+.|.-+|..+-..                     ..++
T Consensus       125 ayAk~~rL~elEefl~-----~~N~A~-iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns  198 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN-----GPNNAH-IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS  198 (624)
T ss_dssp             HHHTSCSSSTTTSTTS-----CCSSSC-THHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred             HHHhhCcHHHHHHHHc-----CCCccc-HHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6666666543222211     122211 234455555555555554444322100                     0123


Q ss_pred             hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011845          148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY  227 (476)
Q Consensus       148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  227 (476)
                      +.+|......+...+++.-|..+--..+ ..++.   +-.+...|...|.+++-+.+++.++.....+...+..||.+|.
T Consensus       199 ~ktWKeV~~ACvd~~EfrLAqicGLniI-vhade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs  274 (624)
T 3lvg_A          199 TRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS  274 (624)
T ss_dssp             SCSHHHHTHHHHHSCTTTTTTHHHHHHH-CCSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCchHHHHHHHhcchhc-ccHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            3344444444444444444433322222 11111   1122333444555555555555555555555555555555544


Q ss_pred             H
Q 011845          228 K  228 (476)
Q Consensus       228 ~  228 (476)
                      +
T Consensus       275 K  275 (624)
T 3lvg_A          275 K  275 (624)
T ss_dssp             S
T ss_pred             h
Confidence            4

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.45  E-value=0.11  Score=48.38  Aligned_cols=101  Identities=12%  Similarity=0.040  Sum_probs=80.4

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCcH----H
Q 011845          249 HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN--SQSY----I  322 (476)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~----~  322 (476)
                      -..++..+|..|...|++++|.+.|.++............++.....++...+++..+..++.++-...  ..++    .
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            345778999999999999999999999988766666667788888999999999999999999986652  2222    2


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          323 TWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       323 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      .....|.++...++|..|...|-.++.
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence            344556667778999999888776654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.17  E-value=0.36  Score=45.52  Aligned_cols=78  Identities=14%  Similarity=0.063  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011845          150 SWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY  227 (476)
Q Consensus       150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  227 (476)
                      .+..+|.+......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|.+++......+.+..++..++.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            345566666666667777777777777777777777777777777777777777777777666556666666665554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.95  E-value=6.2  Score=40.23  Aligned_cols=154  Identities=14%  Similarity=0.081  Sum_probs=82.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC---C---CH----HHHHHH
Q 011845          192 EANMGFIDKGKKLLKIGHAVN-PRD----PVLLQSLALLEYKYSTANLARKLFRRASEIDP---R---HQ----PVWIAW  256 (476)
Q Consensus       192 ~~~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~---~~----~~~~~l  256 (476)
                      ....|+.++++..+.+.+... ..+    ..+++.+|.++...+  .++..++...+....   .   ..    .+-..+
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            344567777777777666422 222    234555666655554  357777776665432   0   11    233456


Q ss_pred             HHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 011845          257 GWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGN  336 (476)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  336 (476)
                      |.++...++ +++.+.+...+..+.. ......-..+|.++.-.|+-+....+++.+.+...++..-...++..+...|+
T Consensus       462 Gla~~GS~~-eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          462 GLAAMGSAN-IEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HHHSTTCCC-HHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHhcCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence            665554444 4566666666653321 11122344567777777777666666666654333222222334444446677


Q ss_pred             hHHHHHHHHHHHh
Q 011845          337 SVRAEEIRNLYFQ  349 (476)
Q Consensus       337 ~~~A~~~~~~~~~  349 (476)
                      .+.+..+.+....
T Consensus       540 ~e~~~~li~~L~~  552 (963)
T 4ady_A          540 QELADDLITKMLA  552 (963)
T ss_dssp             GGGGHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh
Confidence            7777776665543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.82  E-value=0.53  Score=44.41  Aligned_cols=80  Identities=9%  Similarity=0.014  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ  160 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  160 (476)
                      ..+..+|.+......+..|..+|.++..+.|.+...+..+|.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35667888888888889999999999999999999999999999888888889888888888776677788777777664

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.18  E-value=2.8e-06  Score=77.40  Aligned_cols=304  Identities=12%  Similarity=0.095  Sum_probs=191.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845           44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL  123 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~  123 (476)
                      +.+.+|..+|.++...|...+|++.|-++     +++..+........+.|.+++-+.++..+.+. -..+.+-..+..+
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a  125 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA  125 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence            45778888999988888888888887654     33334445556666788888888888777654 3445555677778


Q ss_pred             HHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 011845          124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK  203 (476)
Q Consensus       124 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  203 (476)
                      |.+.++..+-.+++.     .|+.. -....|.-++..|.|+.|.-+|..+    ++    |..++.++..+|++..|++
T Consensus       126 yAk~~rL~elEefl~-----~~N~A-~iq~VGDrcf~e~lYeAAKilys~i----sN----~akLAstLV~L~~yq~AVd  191 (624)
T 3lvg_A          126 LAKTNRLAELEEFIN-----GPNNA-HIQQVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTLVHLGEYQAAVD  191 (624)
T ss_dssp             HHTSCSSSTTTSTTS-----CCSSS-CTHHHHHHHHHSCCSTTSSTTGGGS----CC----CTTTSSSSSSCSGGGSSTT
T ss_pred             HHhhCcHHHHHHHHc-----CCCcc-cHHHHHHHHHHccCHHHHHHHHHhC----cc----HHHHHHHHHHHHHHHHHHH
Confidence            888887654333221     24433 3355778888888888887666542    22    4567778888899988887


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845          204 LLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT  283 (476)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  283 (476)
                      .-+++     +++.+|-.....+...+++.-|..+--..+- .++.   +-.+...|...|-+++-+.+++.++.+...+
T Consensus       192 aArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglglErAH  262 (624)
T 3lvg_A          192 GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALGLERAH  262 (624)
T ss_dssp             TTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCC
T ss_pred             HHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchh
Confidence            76553     4567788888888888888777665544443 2222   2235566778999999999999999887776


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-C-CC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845          284 ESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI-N-SQ------SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV  355 (476)
Q Consensus       284 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  355 (476)
                         ..++..+|.+|.+- ++++-.++++.-... + |.      ....|..+.-+|.+-.+++.|.   ..+++..++.+
T Consensus       263 ---mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~---ltMi~h~~~Aw  335 (624)
T 3lvg_A          263 ---MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI---ITMMNHPTDAW  335 (624)
T ss_dssp             ---HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH---HTTTSCHHHHC
T ss_pred             ---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH---HHHHhCChhhc
Confidence               34577778877654 556666665542221 1 22      2335677777777777777542   33333434444


Q ss_pred             ch--hhhhhhhcccchHHHHHHHHHhcccc
Q 011845          356 DD--ASWVMGFMDIIDPALDRIKQLLNLEK  383 (476)
Q Consensus       356 ~~--~~~~~~~~g~~~~A~~~~~~al~~~p  383 (476)
                      ..  .-.+..+..+.+---+...--++..|
T Consensus       336 ~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P  365 (624)
T 3lvg_A          336 KEGQFKDIITKVANVELYYRAIQFYLEFKP  365 (624)
T ss_dssp             CGGGGTTTGGGCSCSHHHHHHHHHHTTSCC
T ss_pred             cHHHHHHHHHHcchHHHHHHHHHHHHHhCh
Confidence            22  22244444554433333333333344

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.93  E-value=7.9  Score=34.11  Aligned_cols=17  Identities=6%  Similarity=-0.044  Sum_probs=9.3

Q ss_pred             HHHHcCCHHHHHHHHHH
Q 011845          191 FEANMGFIDKGKKLLKI  207 (476)
Q Consensus       191 ~~~~~~~~~~A~~~~~~  207 (476)
                      .|...++...|...+..
T Consensus       196 ~yL~l~n~~~A~~~~~~  212 (336)
T 3lpz_A          196 PYLLVANVRAANTAYRI  212 (336)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHH
Confidence            34555666666554443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=88.89  E-value=5.9  Score=29.58  Aligned_cols=57  Identities=19%  Similarity=0.081  Sum_probs=36.1

Q ss_pred             HHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 011845           88 VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN  144 (476)
Q Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  144 (476)
                      ..+..+|+-++-.+++...+...+-+++.+..+|..|.+.|+..+|.+++.+|.+..
T Consensus        99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            344566666666666666555555566777777777777777777777777766553

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.72  E-value=19  Score=31.36  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=14.5

Q ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHH
Q 011845          112 GNEYIYQTLALLEAKANRYEQARNLF  137 (476)
Q Consensus       112 ~~~~~~~~la~~~~~~g~~~~A~~~~  137 (476)
                      .++..+..+|..|...|++.+|..+|
T Consensus       132 Gdp~LH~~~a~~~~~e~~~~~A~~H~  157 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDFVYEAERYF  157 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            34555555555555555555555554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.16  E-value=13  Score=38.46  Aligned_cols=46  Identities=11%  Similarity=-0.056  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCchh----HHHHHHHHHHH
Q 011845          115 YIYQTLALLEAKANRYEQARNLFRQATKCN-PKSCA----SWIAWSQMEMQ  160 (476)
Q Consensus       115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~----~~~~la~~~~~  160 (476)
                      ..|...+.++...+-++-++...+.|++.. +++..    .|..+-.....
T Consensus       898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a  948 (950)
T 4gq2_M          898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA  948 (950)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence            467788888899999999999999998754 33433    45454444443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.65  E-value=24  Score=36.57  Aligned_cols=52  Identities=10%  Similarity=0.020  Sum_probs=35.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845           86 WAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT  141 (476)
Q Consensus        86 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  141 (476)
                      +...+...|.++-|.    ..+...|.++..-+.+|.++...|++++|..+|+++-
T Consensus       816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA  867 (950)
T 4gq2_M          816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS  867 (950)
T ss_dssp             HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            445555666665443    3445556666666778888888888888888887764

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=80.92  E-value=28  Score=30.39  Aligned_cols=27  Identities=7%  Similarity=-0.074  Sum_probs=21.5

Q ss_pred             CchhHHHHHHHHHHHhccHHHHHHHHH
Q 011845          146 KSCASWIAWSQMEMQQENNLAARQLFE  172 (476)
Q Consensus       146 ~~~~~~~~la~~~~~~~~~~~A~~~~~  172 (476)
                      .++..+..+|..+...|++.+|..+|-
T Consensus       132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            567788888888888888888877764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	476
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	1e-20
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	8e-16
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-18
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-17
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-16
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	6e-08
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-07
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.001
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.004
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.001
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.001

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.7 bits (221), Expect = 1e-20
 Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 7/240 (2%)

Query: 1   MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG 60
            +   Y  +  +     G + + +    EA  IY +       +N  ++  +A  E    
Sbjct: 54  YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113

Query: 61  NIGKARELFD-ASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQT 119
              K   +++    + D      +  +     R   IK  R +  K  +      ++Y T
Sbjct: 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 173

Query: 120 LALLEAKANR-YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQAS 178
            AL+E   ++    A  +F    K         +A+         +   R LFER + + 
Sbjct: 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233

Query: 179 P----KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANL 234
                K+   W  +  FE+N+G +    K+ K        +    +  ALL  +Y   +L
Sbjct: 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE-GKETALLVDRYKFMDL 292

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.8 bits (185), Expect = 8e-16
 Identities = 31/259 (11%), Positives = 81/259 (31%), Gaps = 29/259 (11%)

Query: 48  IWQCWAVLE--------NKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIK-- 97
           +W+ +   E        ++     +    ++   +    H   W+  A    +   +   
Sbjct: 10  MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 69

Query: 98  ------------KARQLLAKGLK-FCGGNEYIYQTLALLEAKANRYEQARNLFRQA-TKC 143
                       +A  +  + +      N  +Y   A  E    +YE+  +++ +     
Sbjct: 70  KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 129

Query: 144 NPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGF-IDKGK 202
           +      +I + +   + E   + R +F++A + +      +    + E           
Sbjct: 130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189

Query: 203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP----RHQPVWIAWGW 258
           K+ ++G       P  + +        +  N  R LF R          +   +W  +  
Sbjct: 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249

Query: 259 MEWKEGNLDTARELYERAL 277
            E   G+L +  ++ +R  
Sbjct: 250 FESNIGDLASILKVEKRRF 268

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.5 bits (135), Expect = 2e-09
 Identities = 21/190 (11%), Positives = 54/190 (28%), Gaps = 31/190 (16%)

Query: 151 WIAWSQMEMQQENNLA--------ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK 202
           W  + Q E                    +E+ +     +   W+    +      +    
Sbjct: 11  WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL---- 66

Query: 203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEI-DPRHQPVWIAWGWMEW 261
                           L     +      ++ A  ++ RA      ++  ++ A+   E 
Sbjct: 67  ----------------LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110

Query: 262 KEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY 321
                +    +Y R L+I+    +            +R   + + R +F+ +       +
Sbjct: 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMK--FARRAEGIKSGRMIFKKAREDARTRH 168

Query: 322 ITWMTWAQLE 331
             ++T A +E
Sbjct: 169 HVYVTAALME 178

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.2 bits (204), Expect = 5e-18
 Identities = 45/288 (15%), Positives = 94/288 (32%), Gaps = 3/288 (1%)

Query: 58  KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
           + G+   A          +  +       + +  +   + ++       +K        Y
Sbjct: 11  QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA 177
             L  +  +  + ++A   +R A +  P     +I  +   +   +   A Q +  A+Q 
Sbjct: 71  SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130

Query: 178 SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARK 237
           +P         G     +G +++ K          P   V   +L  +        LA  
Sbjct: 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190

Query: 238 LFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLE 297
            F +A  +DP     +I  G +  +    D A   Y RALS+          L     + 
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL---ACVY 247

Query: 298 QRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRN 345
              G +  A   +R ++ +       +   A   +++G+   AE+  N
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (195), Expect = 9e-17
 Identities = 42/242 (17%), Positives = 82/242 (33%)

Query: 45  NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLA 104
              +      L   LG + +A+  +  +         AW     +   QG I  A     
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193

Query: 105 KGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN 164
           K +         Y  L  +  +A  +++A   + +A   +P         + +  +Q   
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253

Query: 165 LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLAL 224
             A   + RA++  P    A+          G + + +        + P     L +LA 
Sbjct: 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313

Query: 225 LEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE 284
           ++ +      A +L+R+A E+ P           +  ++G L  A   Y+ A+ I  T  
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373

Query: 285 SA 286
            A
Sbjct: 374 DA 375

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (194), Expect = 1e-16
 Identities = 31/222 (13%), Positives = 74/222 (33%)

Query: 44  ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLL 103
                W     + N  G I  A   F+ +   D   + A+     +        +A    
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 104 AKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163
            + L     +  ++  LA +  +    + A + +R+A +  P    ++   +    ++ +
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286

Query: 164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA 223
              A   +  A++  P +  + +     +   G I++  +L +    V P       +LA
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346

Query: 224 LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGN 265
            +  +      A   ++ A  I P     +   G    +  +
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (194), Expect = 1e-16
 Identities = 48/326 (14%), Positives = 107/326 (32%), Gaps = 4/326 (1%)

Query: 17  LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVAD 76
           L     +      A     +  +  + +N  +    + +  +   + ++      +   +
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 77  KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNL 136
                A+     +   +G +++A +     L+        Y  LA     A   E A   
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123

Query: 137 FRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG 196
           +  A + NP           +         A+  + +A++  P    AW   G      G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183

Query: 197 FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAW 256
            I       +    ++P       +L  +  +    + A   + RA  + P H  V    
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243

Query: 257 GWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316
             + +++G +D A + Y RA+ +      A   L       +  G+++ A   + ++L +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL---ANALKEKGSVAEAEDCYNTALRL 300

Query: 317 NSQSYITWMTWAQLEEDQGNSVRAEE 342
                 +    A ++ +QGN   A  
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVR 326

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 6e-09
 Identities = 33/302 (10%), Positives = 88/302 (29%), Gaps = 14/302 (4%)

Query: 64  KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKA-RQLLAKGLKFCGGNEYIYQTLAL 122
           ++ +    + V       +  G A +   +  ++   +++L   L++        +    
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYA----LDKKVEQD 59

Query: 123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ---MEMQQENNLAARQLFERAVQASP 179
           L   A  ++      +   K       S +  +    +E          Q          
Sbjct: 60  LWNHA--FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL 117

Query: 180 KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLF 239
             R      GI            K      + +      L  L  +    +  + A   +
Sbjct: 118 PCRVKSSQLGIISNKQTHTSAIVKPQSS--SCSYICQHCLVHLGDIARYRNQTSQAESYY 175

Query: 240 RRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQR 299
           R A+++ P +   +     +   +G+  T    Y R++++     +A+  LQ    L + 
Sbjct: 176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK--ALSKA 233

Query: 300 VGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDAS 359
           + +    +  +  S  I +        +     ++ + +R +           +  +   
Sbjct: 234 LESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQ 293

Query: 360 WV 361
            V
Sbjct: 294 LV 295

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 14/140 (10%), Positives = 42/140 (30%), Gaps = 1/140 (0%)

Query: 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185
              + +QA  L  +A K +PK  +   ++ ++     +   A +   ++++  P+     
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 186 HVWG-IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASE 244
                + +A     D  +            +         L           +L  +  E
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127

Query: 245 IDPRHQPVWIAWGWMEWKEG 264
           +      +     + + ++ 
Sbjct: 128 LRQEKGFLANDTSFSDVRDI 147

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 18/134 (13%), Positives = 41/134 (30%), Gaps = 1/134 (0%)

Query: 91  LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS 150
           L +G +++A +LL + +K    +  +  +   L      +E+A     Q+ K  P+    
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 151 WIAWSQM-EMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGH 209
                 + +  Q     A+      V    +      V           ++  +L     
Sbjct: 67  ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126

Query: 210 AVNPRDPVLLQSLA 223
            +      L    +
Sbjct: 127 ELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 15/125 (12%), Positives = 38/125 (30%), Gaps = 1/125 (0%)

Query: 159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVL 218
           + +     A +L   A++ASPK+      +       G  ++  + L     + P     
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 219 LQSLA-LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL 277
              L  L++   +  + A+         +       +    +     + +   EL  +  
Sbjct: 67  ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126

Query: 278 SIDST 282
            +   
Sbjct: 127 ELRQE 131

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 15/135 (11%), Positives = 35/135 (25%), Gaps = 2/135 (1%)

Query: 194 NMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW 253
           + G + +  +LL      +P+D  L  S   L         A +   ++ ++ P + P  
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 254 IAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSS 313
                +           +    A  +    E     +     L     +      L    
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFN--LSMVSQDYEQVSELALQI 125

Query: 314 LNINSQSYITWMTWA 328
             +  +        +
Sbjct: 126 EELRQEKGFLANDTS 140

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 46/240 (19%), Positives = 77/240 (32%), Gaps = 17/240 (7%)

Query: 58  KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
           + G++  A  LF+A+   D  H+ AW      +        A   L + L+    N+   
Sbjct: 31  QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 90

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQME---------------MQQE 162
             LA+     +   QA  + R   +  P          +                 +   
Sbjct: 91  MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 150

Query: 163 NNLAARQLFERAVQASPKNRFAWHVW--GIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQ 220
             L  ++LF  AV+  P +         G+     G  DK         +V P D +L  
Sbjct: 151 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 210

Query: 221 SLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
            L       + +  A   +RRA E+ P +       G      G    A E +  AL++ 
Sbjct: 211 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 270

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 41/259 (15%), Positives = 70/259 (27%), Gaps = 24/259 (9%)

Query: 105 KGLKFCGGNEYIYQTLALLEA----KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ 160
           KG +F   N          E     +      A  LF  A + +PK   +W      + +
Sbjct: 6   KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

Query: 161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQ 220
            E  L A     R ++  P N+ A     +   N     +  ++L+      P    L+ 
Sbjct: 66  NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 125

Query: 221 SLALLE---------------YKYSTANLARKLFRRASEIDPRHQPVWIAW--GWMEWKE 263
                                   S     ++LF  A  +DP      +    G +    
Sbjct: 126 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 185

Query: 264 GNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYIT 323
           G  D A + +       S   +        G           A   +R +L +      +
Sbjct: 186 GEYDKAVDCFTA---ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242

Query: 324 WMTWAQLEEDQGNSVRAEE 342
                    + G    A E
Sbjct: 243 RYNLGISCINLGAHREAVE 261

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 1/151 (0%)

Query: 17  LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCW-AVLENKLGNIGKARELFDASTVA 75
           +   L   S   E + ++    +          QC   VL N  G   KA + F A+   
Sbjct: 142 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 201

Query: 76  DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARN 135
                  W+            ++A     + L+   G       L +       + +A  
Sbjct: 202 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261

Query: 136 LFRQATKCNPKSCASWIAWSQMEMQQENNLA 166
            F +A     KS         M     + L 
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLR 292

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 52.2 bits (123), Expect = 6e-08
 Identities = 34/315 (10%), Positives = 86/315 (27%), Gaps = 19/315 (6%)

Query: 5   DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGK 64
            ++         LG+VL  + ++  + A+  +  Q  +  + + +  W+     +     
Sbjct: 45  GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS----LIQQSEI 100

Query: 65  ARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE 124
                   T  +    A          +    +   ++ A+ L      +    +     
Sbjct: 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 160

Query: 125 AKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFA 184
              + Y+  + L   A           +  ++ ++ +        L       S     A
Sbjct: 161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR-----LENLLGNGKYHSDWISNA 215

Query: 185 WHVWGIFEANMGFIDKG----KKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR 240
             V  I+    G         +   K   A N       +++A  +        A  +  
Sbjct: 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 275

Query: 241 RA------SEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWG 294
                     +        +    + W+ G    A+ +   AL + + T   +  +    
Sbjct: 276 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 335

Query: 295 VLEQRVGNLSAARRL 309
            + Q++  L     L
Sbjct: 336 AMAQQLRQLIQLNTL 350

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 5/156 (3%)

Query: 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185
              +Y +A   + +A   NP     +   +   ++ +    A     RA++   ++  A 
Sbjct: 16  VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75

Query: 186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEI 245
              G  +  M   D+    L+  +++     +          +     +A+K    + E 
Sbjct: 76  FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKRWNSIEE 130

Query: 246 DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS 281
              HQ   +            +   E  +R      
Sbjct: 131 RRIHQESELHSYLTRLIAAERERELEECQRNHEGHE 166

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 17/95 (17%), Positives = 34/95 (35%)

Query: 91  LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS 150
                  +A     + +         Y   AL   K  + EQA    R+A + + +S  +
Sbjct: 15  FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 74

Query: 151 WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185
                Q +++ E+   A    +RA   + + R  +
Sbjct: 75  HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 19/188 (10%), Positives = 60/188 (31%), Gaps = 6/188 (3%)

Query: 58  KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117
                 +A   +  +   +      +   A+  L+    ++A     + L+  G +   +
Sbjct: 16  VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75

Query: 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA 177
             L   + +   Y++A    ++A     +        +  +        A++    +++ 
Sbjct: 76  FFLGQCQLEMESYDEAIANLQRAYSLAKEQ-----RLNFGDDIPSALRIAKKKRWNSIEE 130

Query: 178 SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA-R 236
              ++ +     +        ++  +  +  H  +  D  +    A +E K+        
Sbjct: 131 RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMD 190

Query: 237 KLFRRASE 244
           +LF +  E
Sbjct: 191 ELFSQVDE 198

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 27/229 (11%), Positives = 64/229 (27%), Gaps = 2/229 (0%)

Query: 62  IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121
           + +  ++  +  + D       +   VL    G    AR   ++ L        ++  L 
Sbjct: 19  LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG 78

Query: 122 LLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
           +   +A  ++ A   F    + +P    + +           +  A+       Q  P +
Sbjct: 79  IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 138

Query: 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN--LARKLF 239
            F      + E  +      + L +     +            L            +   
Sbjct: 139 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADA 198

Query: 240 RRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAAR 288
              + +           G      G+LD+A  L++ A++ +       R
Sbjct: 199 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.8 bits (107), Expect = 6e-06
 Identities = 27/264 (10%), Positives = 58/264 (21%), Gaps = 16/264 (6%)

Query: 2   KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQ------GENPYIWQCWAVL 55
           + +   P+    +    +VL             A               NP  +  W   
Sbjct: 54  QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 113

Query: 56  ENKLGNIGK-----ARELFDASTVADKGHIAAWHGW-AVLELRQGNIKKARQLLAKGLKF 109
              L  + +       EL      AD+ +   W     V         +        +  
Sbjct: 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173

Query: 110 CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQ 169
              N   +   + L  + +    +    R       K           +   +    +  
Sbjct: 174 NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ----SAW 229

Query: 170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY 229
            + R +    +  F   +       +    +  K L+     N    + +  L       
Sbjct: 230 FYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL 289

Query: 230 STANLARKLFRRASEIDPRHQPVW 253
                  + F     +DP      
Sbjct: 290 LYEKETLQYFSTLKAVDPMRAAYL 313

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 25/231 (10%)

Query: 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185
           K +  +       +  K      A+   + + +   E + +  +L  + + A+P     W
Sbjct: 8   KTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQ-AGELDESVLELTSQILGANPDFATLW 66

Query: 186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEI 245
           +             + + L              L++    E   +              +
Sbjct: 67  NC------------RREVLQH------------LETEKSPEESAALVKAELGFLESCLRV 102

Query: 246 DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSA 305
           +P+    W    W+  +    + AREL   A  +++   +         V  Q     + 
Sbjct: 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162

Query: 306 ARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVD 356
                 S +  N  +Y +W   + L         +     L      + ++
Sbjct: 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE 213

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 14/103 (13%), Positives = 35/103 (33%)

Query: 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185
                + A   + +A K +P +   +   S    ++ +   A +   + V   P     +
Sbjct: 15  SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGY 74

Query: 186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK 228
                    +   ++ K+  + G      +P L + L  +E +
Sbjct: 75  SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 24/239 (10%), Positives = 73/239 (30%), Gaps = 12/239 (5%)

Query: 52  WAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA-VLELRQGNIKKARQLLAKGLKFC 110
           +  +  +     +A +L   +   +  +   WH    +L+  Q ++ +    +   ++  
Sbjct: 49  FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 108

Query: 111 GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQL 170
             N  ++    +L        Q           + K+  +W     +  + +      Q 
Sbjct: 109 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 168

Query: 171 FERAVQASPKNRFAWH----VWGIFEANMGFIDKGKKLLKIGHAV--NPRDPVLLQSLAL 224
            ++ ++   +N   W+    V              +++      +   P +      L  
Sbjct: 169 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 228

Query: 225 LEYKYSTANLARKLFRRASEIDPRHQPVWI----AWGWMEWKEGNLDTARELYERALSI 279
           +       +    L  +  ++ P H   ++       + +  E   D   ++  +AL +
Sbjct: 229 ILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 286

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 30/236 (12%), Positives = 72/236 (30%), Gaps = 7/236 (2%)

Query: 117 YQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL-AARQLFERAV 175
           Y     +  +  R E+A  L R A + N  +   W     +    + +L          +
Sbjct: 46  YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII 105

Query: 176 QASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA 235
           +  PKN   WH   +    +    +  + +      + ++    Q    +  ++   +  
Sbjct: 106 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 165

Query: 236 RKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDT------ARELYERALSIDSTTESAARC 289
            +   +  + D R+  VW    ++       +         +     + +    ESA   
Sbjct: 166 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY 225

Query: 290 LQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRN 345
           L+            +   +L     + +S   I ++     +  +      E+I N
Sbjct: 226 LKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 161 QENNLAARQLFERAVQASPKN---RFAWHVWGIFEANMGFIDKGKKLLK--IGHAVNPRD 215
            E+ L   + F+    A   +   +F +    +       I KG  LL+  +        
Sbjct: 12  VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ 71

Query: 216 PVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW 253
              +  LA+  Y+      A K  R   + +P++    
Sbjct: 72  RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	476
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.94
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.92
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.92
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.88
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.88
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.87
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.8
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.8
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.73
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.7
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.69
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.68
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.67
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.66
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.61
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.58
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.57
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.56
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.55
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.53
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.52
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.5
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.49
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.48
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.48
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.47
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.47
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.46
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.43
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.19
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.13
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.11
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.1
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.09
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.07
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.84
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.83
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.29
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.27
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.26
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.16
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	98.0
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.93
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.8
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.48
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	89.79
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	86.58
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	82.02

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-39  Score=304.27  Aligned_cols=371  Identities=14%  Similarity=0.120  Sum_probs=331.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ   93 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   93 (476)
                      ++.+|..+++.|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~   80 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER   80 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Confidence            4578999999999999999999999998 899999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845           94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFER  173 (476)
Q Consensus        94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  173 (476)
                      |++++|+..+..+....|.........+......+....+...........+.........+......+....+...+.+
T Consensus        81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence            99999999999999999999998888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 011845          174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW  253 (476)
Q Consensus       174 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  253 (476)
                      .+...|++..++..+|.++...|++++|...+++++..+|+++.++..+|.++...|++++|+..++++....|.....+
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  240 (388)
T d1w3ba_         161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH  240 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence            88888888888888899998899999999999999888898888888899999999999999999999888888888888


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 011845          254 IAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED  333 (476)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  333 (476)
                      ..+|.++...|++++|+..|+++++.+|+++.   ++..+|.++...|++++|+..|++++...|.+..++..++.++..
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence            88999998899999999999999988888854   467778888999999999999999888888888888889999999


Q ss_pred             cCChHHHHHHHHHHHhhhhh---hcchhhhhhhhcccchHHHHHHHHHhccccCCCCC
Q 011845          334 QGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKE  388 (476)
Q Consensus       334 ~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  388 (476)
                      .|++++|+..++++++..|+   ++..+|.++...|++++|+..|+++++++|+++.+
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a  375 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA  375 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999998888886654   45678888888899999999999999988887543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-38  Score=296.31  Aligned_cols=362  Identities=17%  Similarity=0.187  Sum_probs=292.1

Q ss_pred             cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845            2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA   81 (476)
Q Consensus         2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~   81 (476)
                      ++++.+|+++.++..+|.++...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..+..+...+|....
T Consensus        24 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  102 (388)
T d1w3ba_          24 QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID  102 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccccccc
Confidence            4678899999999999999999999999999999999998 899999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845           82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ  161 (476)
Q Consensus        82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  161 (476)
                      .+...+......+....+...........+.........+......+....+...+.+.+...|+++.++..+|.++...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  182 (388)
T d1w3ba_         103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ  182 (388)
T ss_dssp             HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhccccccc
Confidence            88888888887777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845          162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR  241 (476)
Q Consensus       162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  241 (476)
                      |++++|...++++++.+|+++.++..+|.++...|++++|+..++++....|.....+..+|.++...|++++|+..|++
T Consensus       183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  262 (388)
T d1w3ba_         183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR  262 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            77777877777777777777777777777777777788887777777777777777777777777777788788888877


Q ss_pred             HhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH
Q 011845          242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY  321 (476)
Q Consensus       242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  321 (476)
                      +++.+|+++.++..+|.++...|++++|+..++.++...|....   .+..+|.++...|++++|+.+|+++++.+|+++
T Consensus       263 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  339 (388)
T d1w3ba_         263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---SLNNLANIKREQGNIEEAVRLYRKALEVFPEFA  339 (388)
T ss_dssp             HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccch---hhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            77777777777777777777778888888777777777777644   355667777777788888888887777777777


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhccc
Q 011845          322 ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDI  367 (476)
Q Consensus       322 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~  367 (476)
                      .++..+|.++...|++++|+..++++++..|+   .+..+|.++..+|+
T Consensus       340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            77777787777778888887777777776553   34556666665553

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-30  Score=231.11  Aligned_cols=236  Identities=19%  Similarity=0.160  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 011845           49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN  128 (476)
Q Consensus        49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g  128 (476)
                      .+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|.+...+..+|.++...|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cHHHHHHHHHHHHhcCCCchhHH---------------HHHHHHHHHhccHHHHHHHHHHHHHcCCC--cHHHHHHHHHH
Q 011845          129 RYEQARNLFRQATKCNPKSCASW---------------IAWSQMEMQQENNLAARQLFERAVQASPK--NRFAWHVWGIF  191 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~~~~~---------------~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~  191 (476)
                      ++++|+..+++++...|.....+               ......+...+.+.+|+..|.+++..+|+  ++.++..+|.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            55555555555555555432211               11112233445666677777777776665  34566666777


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHH
Q 011845          192 EANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARE  271 (476)
Q Consensus       192 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (476)
                      +...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  261 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  261 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHccCCCCh
Q 011845          272 LYERALSIDSTTE  284 (476)
Q Consensus       272 ~~~~a~~~~~~~~  284 (476)
                      .|+++++++|++.
T Consensus       262 ~~~~al~l~p~~~  274 (323)
T d1fcha_         262 HFLEALNMQRKSR  274 (323)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHhCCcCh
Confidence            7777777666654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-29  Score=228.74  Aligned_cols=260  Identities=13%  Similarity=0.089  Sum_probs=229.9

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL   89 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~   89 (476)
                      +....+..|..++..|++++|+..|+++++.+ |.++.+|..+|.++...|++++|+..|.++++.+|++...|..+|.+
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   96 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS   96 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccc
Confidence            45667899999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCcHHHH---------------HHHHHHHHHhccHHHHHHHHHHHHhcCCCc--hhHHH
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGNEYIY---------------QTLALLEAKANRYEQARNLFRQATKCNPKS--CASWI  152 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~---------------~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~  152 (476)
                      +...|++++|+..+++++...|......               ......+...+.+.+|+..|.+++..+|+.  +.++.
T Consensus        97 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~  176 (323)
T d1fcha_          97 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC  176 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred             ccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence            9999999999999999999888653221               122334456688999999999999999875  56788


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 011845          153 AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA  232 (476)
Q Consensus       153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  232 (476)
                      .+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++
T Consensus       177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  256 (323)
T d1fcha_         177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH  256 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             hhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCHHH-----------HHHHHHHHHHcCChhHHH
Q 011845          233 NLARKLFRRASEIDPRHQPV-----------WIAWGWMEWKEGNLDTAR  270 (476)
Q Consensus       233 ~~A~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~  270 (476)
                      ++|+..|+++++++|++...           |..++.++...|+.+.+.
T Consensus       257 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         257 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999998877543           444555555556555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-25  Score=199.88  Aligned_cols=237  Identities=9%  Similarity=0.103  Sum_probs=151.5

Q ss_pred             cCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCCCchhHHHH
Q 011845           75 ADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN-RYEQARNLFRQATKCNPKSCASWIA  153 (476)
Q Consensus        75 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~  153 (476)
                      .+|+..+++..+|.++.+.+.+++|+.+++++++++|.+..+|..+|.++...| ++++|+..++++++.+|++..+|..
T Consensus        38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            345555666666666666666666666666666666666666666666666655 3666666666666666666666666


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 011845          154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYST--  231 (476)
Q Consensus       154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--  231 (476)
                      +|.++...|++++|+..+.++++.+|++..+|..+|.++...|++++|+..++++++++|.+..+|..+|.++...+.  
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence            666666666666666666666666666666666666666666666666666666666666666666666666665554  


Q ss_pred             ----HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHh--CCHHH
Q 011845          232 ----ANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV--GNLSA  305 (476)
Q Consensus       232 ----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~  305 (476)
                          +++|+..+.++++.+|++..+|..++.++... ..+++...++.++++.|+..... .+..++.++...  +..+.
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~y~~~~~~~~~~  275 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPY-LIAFLVDIYEDMLENQCDN  275 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHH-HHHHHHHHHHHHHHTTCSS
T ss_pred             hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHH-HHHHHHHHHHHHHhcCHHH
Confidence                46777777777777777777777777765443 35677777777777766654322 233444444332  33333


Q ss_pred             HHHHHHHH
Q 011845          306 ARRLFRSS  313 (476)
Q Consensus       306 A~~~~~~a  313 (476)
                      +...++++
T Consensus       276 ~~~~~~ka  283 (315)
T d2h6fa1         276 KEDILNKA  283 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.3e-25  Score=198.56  Aligned_cols=207  Identities=15%  Similarity=0.132  Sum_probs=118.4

Q ss_pred             ccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCcCcHHHH
Q 011845            5 DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG-NIGKARELFDASTVADKGHIAAW   83 (476)
Q Consensus         5 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~   83 (476)
                      ..+|+..+++..+|.++...+.+++|+..++++++.+ |.+..+|..+|.++...| ++++|+..+++++..+|++..+|
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            4445555555555666666666666666666666655 556666666666555554 35666666666666666666666


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845           84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN  163 (476)
Q Consensus        84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~  163 (476)
                      ..+|.++...|++++|+..+.++++.+|.+..+|..+|.++...|++++|+..++++++++|.+..+|..+|.++...+.
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            66666666666666666666666666666666666666666666666666666666666666665566555555544433


Q ss_pred             ------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011845          164 ------NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNP  213 (476)
Q Consensus       164 ------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  213 (476)
                            +++|+..+.++++.+|++..+|..++.++... ..+++...++++++..|
T Consensus       196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~  250 (315)
T d2h6fa1         196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQP  250 (315)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTT
T ss_pred             cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCC
Confidence                  34555555555555555555555555543332 23445555555554444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.4e-25  Score=203.93  Aligned_cols=268  Identities=7%  Similarity=-0.077  Sum_probs=219.5

Q ss_pred             cCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh----------CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 011845           59 LGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ----------GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN  128 (476)
Q Consensus        59 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g  128 (476)
                      .+..++|+.++++++..+|++..+|...+.++...          |++.+|+.+++++++.+|++..+|..+|.++...+
T Consensus        42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence            33457889999999988999888887766665543          34788888999999999999998888888887776


Q ss_pred             c--HHHHHHHHHHHHhcCCCchhHH-HHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 011845          129 R--YEQARNLFRQATKCNPKSCASW-IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLL  205 (476)
Q Consensus       129 ~--~~~A~~~~~~~~~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  205 (476)
                      +  +++|+..+++++..+|.+..++ ...+.++...+.+++|+..+++++..+|.+..+|..+|.++...|++++|...+
T Consensus       122 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            4  7889999999999988887776 456778888888999999999999999999999999999999999988888888


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845          206 KIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES  285 (476)
Q Consensus       206 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  285 (476)
                      .+++...|.....+.    .+...+..+++...+.+++...|.....+..++.++...|++.+|+..+.+++..+|.+  
T Consensus       202 ~~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--  275 (334)
T d1dcea1         202 RLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWC--  275 (334)
T ss_dssp             SSCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH--
T ss_pred             HHhHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchH--
Confidence            877777665544333    34555677788888999988888888888888888888899999999999988887776  


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 011845          286 AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED  333 (476)
Q Consensus       286 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  333 (476)
                       ...+..+|.++...|++++|+++|+++++++|.+...|..++..+.-
T Consensus       276 -~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         276 -LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             -HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence             44577789999999999999999999999999888888888777654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=2.7e-25  Score=202.06  Aligned_cols=270  Identities=9%  Similarity=-0.077  Sum_probs=238.4

Q ss_pred             HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHc----------CCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845           22 SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKL----------GNIGKARELFDASTVADKGHIAAWHGWAVLEL   91 (476)
Q Consensus        22 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   91 (476)
                      ...+..++|+.++++++..+ |++..+|...+.++...          |++++|+.++++++..+|++..+|..+|.++.
T Consensus        40 ~~~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence            33344589999999999998 99999998777765544          44889999999999999999999999999988


Q ss_pred             HhCC--HHHHHHHHHHhhccCCCcHHHH-HHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH
Q 011845           92 RQGN--IKKARQLLAKGLKFCGGNEYIY-QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR  168 (476)
Q Consensus        92 ~~~~--~~~A~~~~~~~~~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~  168 (476)
                      ..++  +++|+..+++++..+|.+..++ ...|.++...+.+++|+..++++++.+|.+..+|..+|.++...|++++|+
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence            8764  8999999999999999988876 567788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845          169 QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR  248 (476)
Q Consensus       169 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  248 (476)
                      ..+.+++...|.....+    ..+...+..+++...+.+++...|.+...+..++.++...+++.+|+..+.+++..+|.
T Consensus       199 ~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  274 (334)
T d1dcea1         199 PQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW  274 (334)
T ss_dssp             SCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHhHHhHHHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence            99998888877665443    34556788889999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHH
Q 011845          249 HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQR  299 (476)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~  299 (476)
                      +..++..+|.++...|++++|+.+|+++++++|....   .|..++..+.-
T Consensus       275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~---y~~~L~~~~~~  322 (334)
T d1dcea1         275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA---YLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHH---HHHHHHHHHhH
Confidence            9999999999999999999999999999999998744   45555655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.6e-22  Score=174.36  Aligned_cols=201  Identities=12%  Similarity=0.055  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845           81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ  160 (476)
Q Consensus        81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  160 (476)
                      .+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----HcCCHHHHH
Q 011845          161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY----KYSTANLAR  236 (476)
Q Consensus       161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~~~~A~  236 (476)
                      .|++++|+..|+++++.+|.+......++..+...+..+.+...........+.....  .+...+.    ..+..+.+.
T Consensus       118 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  195 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTLMERLK  195 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555444444444444444433333333333332222110  0111111    111122333


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845          237 KLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT  283 (476)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  283 (476)
                      ..+.......|....+++.+|.++...|++++|+.+|++++..+|++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         196 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            33333333344445566666666666666666666666666666655

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.1e-21  Score=171.18  Aligned_cols=224  Identities=17%  Similarity=0.090  Sum_probs=156.9

Q ss_pred             CCHHHHHHHHHHhhccCC----CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHH
Q 011845           94 GNIKKARQLLAKGLKFCG----GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQ  169 (476)
Q Consensus        94 ~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~  169 (476)
                      .+.+.|+..+++++...+    ....+++.+|.+|...|++++|+..|++++.++|+++.+|..+|.++...|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            345667777777776533    3456788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 011845          170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH  249 (476)
Q Consensus       170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  249 (476)
                      .|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.+......++..+...+..+.+...........+..
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence            88888888888888888888888888888888888888888888888877777777777776665555555555544443


Q ss_pred             HHHHHHHHHHHHH----cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 011845          250 QPVWIAWGWMEWK----EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYI  322 (476)
Q Consensus       250 ~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  322 (476)
                      .. + .+...+..    .+.++.+...+.......|..   ...++.+|.++...|++++|+.+|++++..+|++..
T Consensus       173 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         173 WG-W-NIVEFYLGNISEQTLMERLKADATDNTSLAEHL---SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             TH-H-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             hh-h-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence            22 1 11111111    112222233333222222222   345667788888888888888888888888887653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.2e-20  Score=172.52  Aligned_cols=275  Identities=12%  Similarity=0.041  Sum_probs=143.5

Q ss_pred             cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc
Q 011845            4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN----PYIWQCWAVLENKLGNIGKARELFDASTVADKGH   79 (476)
Q Consensus         4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~   79 (476)
                      +..++..++.....|.++...|++++|+..|++++...+..+    ..++..+|.++...|++++|+..|++++...+..
T Consensus         5 ~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_           5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            344444556666677777777777777777777776652222    2355666777777777777777777776543321


Q ss_pred             ------HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC--------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 011845           80 ------IAAWHGWAVLELRQGNIKKARQLLAKGLKFCG--------GNEYIYQTLALLEAKANRYEQARNLFRQATKCNP  145 (476)
Q Consensus        80 ------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  145 (476)
                            ..++..++.++...|++..|...+.+++...+        .....+..+|.++...|+++.+...+.+++...+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~  164 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  164 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence                  24455666666666777776666666654321        1123445566666666666666666666665543


Q ss_pred             Cc-----hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011845          146 KS-----CASWIAWSQMEMQQENNLAARQLFERAVQASPK-------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNP  213 (476)
Q Consensus       146 ~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  213 (476)
                      ..     ..++...+..+...+++.++...+.++....+.       ...++...+.++...|++++|...+++++...+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  244 (366)
T d1hz4a_         165 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF  244 (366)
T ss_dssp             TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred             hhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            22     224445555555566666666555555543221       122334444444444555555555544444433


Q ss_pred             CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845          214 RD----PVLLQSLALLEYKYSTANLARKLFRRASEI------DPRHQPVWIAWGWMEWKEGNLDTARELYERALS  278 (476)
Q Consensus       214 ~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  278 (476)
                      .+    ...+..+|.++...|++++|+..+++++..      .|....++..+|.++...|++++|+..++++++
T Consensus       245 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         245 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            22    123333444444444444444444444321      122223344444444444444444444444433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.9e-19  Score=163.20  Aligned_cols=273  Identities=11%  Similarity=-0.010  Sum_probs=208.6

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-----HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc------
Q 011845           45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI-----AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN------  113 (476)
Q Consensus        45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------  113 (476)
                      .+++....|.++...|++++|+.++++++...|.+.     .++..+|.++...|++++|+..|+++++..+..      
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            456677788899999999999999999998887653     467788999999999999999999988764322      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC--------chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC-----
Q 011845          114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPK--------SCASWIAWSQMEMQQENNLAARQLFERAVQASPK-----  180 (476)
Q Consensus       114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----  180 (476)
                      ..++..++.++...|++..|...+.+++...+.        ....+..+|.++...|+++.+...+.+++...+.     
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  170 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence            346678888889999999999999888765321        2235667888888899999999999888876553     


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----
Q 011845          181 NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR-------DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH----  249 (476)
Q Consensus       181 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----  249 (476)
                      ....+...+..+...+++.++...+.++....+.       ...++..++.++...|++++|...+++++...+.+    
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  250 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL  250 (366)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence            2456677788888888888888888877664332       13356677888888888888888888888776643    


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHccC---CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845          250 QPVWIAWGWMEWKEGNLDTARELYERALSID---STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN  317 (476)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  317 (476)
                      ...+..+|.++...|++++|...+++++...   ...+.....+..+|.++...|++++|.+.+++++++.
T Consensus       251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            3456678888888888888888888887542   3334445567778888888888888888888887764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.9e-17  Score=147.60  Aligned_cols=239  Identities=13%  Similarity=0.159  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845           63 GKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATK  142 (476)
Q Consensus        63 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  142 (476)
                      ..+..+|++++...|.++.+|+..+..+...++..                    ...+.+....+..++|..+|+++++
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~a~~i~~ral~   92 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLL--------------------AEKGDMNNAKLFSDEAANIYERAIS   92 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------HHTSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchH--------------------HHHHHHhhcccchHHHHHHHHHHHH
Confidence            44566677777777777777776666544332210                    0001111222334555555666554


Q ss_pred             c-CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 011845          143 C-NPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN-RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQ  220 (476)
Q Consensus       143 ~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  220 (476)
                      . .|.+...|..++.++...|+++.|..+|++++...|.+ ..+|..++.+....|+++.|+.+|.++++..|.+...+.
T Consensus        93 ~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~  172 (308)
T d2onda1          93 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV  172 (308)
T ss_dssp             TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Confidence            3 45555555555666666666666666666666555544 234555556666666666666666666666666655555


Q ss_pred             HHHHHHHH-cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh-HHHHHHHHHHHHH
Q 011845          221 SLALLEYK-YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES-AARCLQAWGVLEQ  298 (476)
Q Consensus       221 ~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~l~~~~~  298 (476)
                      ..+..... .|+.+.|..+|++++...|+++..|..++..+...|++++|..+|++++...|.++. ...++..+.....
T Consensus       173 ~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~  252 (308)
T d2onda1         173 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            55554332 355666666666666666666666666666666666666666666666665544332 1223444455555


Q ss_pred             HhCCHHHHHHHHHHHHhhCCCcH
Q 011845          299 RVGNLSAARRLFRSSLNINSQSY  321 (476)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~p~~~  321 (476)
                      ..|+.+.+..+++++.+..|...
T Consensus       253 ~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         253 NIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HcCCHHHHHHHHHHHHHHCcccc
Confidence            66666666666666666665543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=3.2e-17  Score=146.16  Aligned_cols=192  Identities=17%  Similarity=0.207  Sum_probs=171.7

Q ss_pred             hccHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 011845          161 QENNLAARQLFERAVQA-SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP-VLLQSLALLEYKYSTANLARKL  238 (476)
Q Consensus       161 ~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~  238 (476)
                      .+..++|..+|+++++. .|.+...|..++.++...|+++.|..+|++++...|.+. .+|..++......|+++.|+.+
T Consensus        77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            34568899999999975 788889999999999999999999999999999999774 5789999999999999999999


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845          239 FRRASEIDPRHQPVWIAWGWMEWK-EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN  317 (476)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  317 (476)
                      |+++++..|.+...+...+..... .|+.+.|..+|++++...|+++..   +..++..+...|++++|+.+|++++...
T Consensus       157 ~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~---w~~y~~~~~~~g~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         157 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY---VLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            999999999999999998887654 689999999999999999999654   6667999999999999999999999987


Q ss_pred             CCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845          318 SQS----YITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV  355 (476)
Q Consensus       318 p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  355 (476)
                      |.+    ..+|..+..+....|+.+.+..+++++.+..++..
T Consensus       234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            754    35899999999999999999999999988777554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.6e-18  Score=160.11  Aligned_cols=229  Identities=9%  Similarity=-0.071  Sum_probs=162.2

Q ss_pred             HHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhc
Q 011845           29 EARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLK  108 (476)
Q Consensus        29 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  108 (476)
                      +|+++|++++... |+.+.++..+|.++...|++++|   |++++..+|+........+.+.  ...+..+++.+++..+
T Consensus         4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k   77 (497)
T d1ya0a1           4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK   77 (497)
T ss_dssp             HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence            7899999999887 88888999999999999999876   8899998887666543332222  2235667888888776


Q ss_pred             cCC--CcHH-HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHH
Q 011845          109 FCG--GNEY-IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW  185 (476)
Q Consensus       109 ~~p--~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  185 (476)
                      ...  +... ....++.++...+.|+.|+..+.+++...|.+...+..+|..+...|++++|+..+.+++..+|.  .++
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~  155 (497)
T d1ya0a1          78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCL  155 (497)
T ss_dssp             CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--HHH
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHH
Confidence            542  2222 23345666777889999999999999999999999999999999999999999999999887653  578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 011845          186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGN  265 (476)
Q Consensus       186 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  265 (476)
                      ..+|.++...|++++|+.+|++++.++|++..+++.+|.++...|+..+|+.+|.+++...|..+.++.+++.++.+..+
T Consensus       156 ~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999998876543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=9e-17  Score=141.79  Aligned_cols=199  Identities=9%  Similarity=0.018  Sum_probs=95.9

Q ss_pred             HHHHHHhCCHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc------hhHHHHH
Q 011845           87 AVLELRQGNIKKARQLLAKGLKFCG------GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS------CASWIAW  154 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l  154 (476)
                      |.+|...|++++|+..|.+++.+.+      ....++..+|.+|...|++++|+..|++++.+.+..      ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            6666666666666666666655421      112344555555555555555555555555443222      2233344


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHH
Q 011845          155 SQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR------DPVLLQSLALLEYK  228 (476)
Q Consensus       155 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~  228 (476)
                      |.++..                                 ..|++++|+..|++++.+.+.      ...++..+|.++..
T Consensus       124 ~~~~~~---------------------------------~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~  170 (290)
T d1qqea_         124 GEILEN---------------------------------DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL  170 (290)
T ss_dssp             HHHHHH---------------------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhHhh---------------------------------HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Confidence            444432                                 234444444444444433211      12234555555555


Q ss_pred             cCCHHHHHHHHHHHhccCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH--HHHHHHHHHHHHH
Q 011845          229 YSTANLARKLFRRASEIDPRHQ-------PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA--ARCLQAWGVLEQR  299 (476)
Q Consensus       229 ~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~l~~~~~~  299 (476)
                      .|++++|+..|++++...+...       ..+...+.++...|++..|...++++.+++|.....  ..++..+..++..
T Consensus       171 ~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~  250 (290)
T d1qqea_         171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE  250 (290)
T ss_dssp             TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred             cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHh
Confidence            5555555555555555544332       234455555666666666666666666665543322  1223333333333


Q ss_pred             --hCCHHHHHHHHHHHHhhCC
Q 011845          300 --VGNLSAARRLFRSSLNINS  318 (476)
Q Consensus       300 --~g~~~~A~~~~~~al~~~p  318 (476)
                        .+.+++|+..|.++.+++|
T Consensus       251 ~d~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         251 GDSEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             TCTTTHHHHHHHHTTSSCCCH
T ss_pred             cCHHHHHHHHHHHHHHhhcCH
Confidence              2346666666666555554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.6e-18  Score=160.53  Aligned_cols=270  Identities=9%  Similarity=-0.031  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845           63 GKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATK  142 (476)
Q Consensus        63 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  142 (476)
                      -+|+++|++++.+.|+..+++..+|.++..+|++++|   |++++..+|+....+.....+.  ...+..+++.+++..+
T Consensus         3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k   77 (497)
T d1ya0a1           3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK   77 (497)
T ss_dssp             HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence            3799999999999999999999999999999999876   8999999887666543333222  2346678888888876


Q ss_pred             cCC--CchhH-HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 011845          143 CNP--KSCAS-WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL  219 (476)
Q Consensus       143 ~~p--~~~~~-~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  219 (476)
                      ...  +.... ...++.+....+.|+.|+..+.+++..+|++...+..+|..+...|++++|...+.+++..+|  ..++
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~  155 (497)
T d1ya0a1          78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCL  155 (497)
T ss_dssp             CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHH
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHH
Confidence            542  22222 233456667788999999999999999999999999999999999999999999999988765  4688


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHH
Q 011845          220 QSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQR  299 (476)
Q Consensus       220 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~  299 (476)
                      ..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|++.+|+.+|.+++...|..+.+   +.+++.++.+
T Consensus       156 ~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a---~~nL~~~~~~  232 (497)
T d1ya0a1         156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA---STNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999988654   6677777665


Q ss_pred             hCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845          300 VGNLSAARRLFRSSLNINSQS---YITWMTWAQLEEDQGNSVRAEEIRNLYFQ  349 (476)
Q Consensus       300 ~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  349 (476)
                      ..+..++       ....+..   ......+..++...+..+...++.+.+..
T Consensus       233 ~~~~~~~-------~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~  278 (497)
T d1ya0a1         233 ALESRDE-------VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEE  278 (497)
T ss_dssp             HTTSCCC-------CCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred             hhhhhhh-------hccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Confidence            4432211       1111112   23445566666777777777766665544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=4e-16  Score=137.52  Aligned_cols=199  Identities=13%  Similarity=0.087  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcC------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc------HH
Q 011845           48 IWQCWAVLENKLGNIGKARELFDASTVAD------KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN------EY  115 (476)
Q Consensus        48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~  115 (476)
                      .+...|.+|...|++++|+..|.+++...      +....++..+|.+|...|++++|+..+++++.+.+..      ..
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            34445888999999999999999998753      2234678899999999999999999999998875433      45


Q ss_pred             HHHHHHHHHHH-hccHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH------
Q 011845          116 IYQTLALLEAK-ANRYEQARNLFRQATKCNPKS------CASWIAWSQMEMQQENNLAARQLFERAVQASPKNR------  182 (476)
Q Consensus       116 ~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------  182 (476)
                      ++..+|.++.. .|++++|+.+|++++.+.+..      ..++..+|.++...|++++|+..|++++...+...      
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  198 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence            77888888865 699999999999998764322      34577788888888888888888888888766542      


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHH--cCCHHHHHHHHHHHhccC
Q 011845          183 -FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPV-----LLQSLALLEYK--YSTANLARKLFRRASEID  246 (476)
Q Consensus       183 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~la~~~~~--~~~~~~A~~~~~~~~~~~  246 (476)
                       ..+...+.++...|++..|...++++++.+|..+.     .+..++.++..  .+.+++|+..|+++.+++
T Consensus       199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence             34456666667777777777777777776664332     22333333322  234555555555555444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4e-16  Score=116.59  Aligned_cols=102  Identities=16%  Similarity=0.121  Sum_probs=41.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845           53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ  132 (476)
Q Consensus        53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  132 (476)
                      |..++..|++++|+..|++++..+|.++.+|..+|.++...|++++|+..+.++++++|+++.+|+.+|.++..+|++++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence            33334444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHhcCCCchhHHHHH
Q 011845          133 ARNLFRQATKCNPKSCASWIAW  154 (476)
Q Consensus       133 A~~~~~~~~~~~p~~~~~~~~l  154 (476)
                      |+..|+++++.+|+++.++..+
T Consensus        90 A~~~~~~a~~~~p~~~~~~~~l  111 (117)
T d1elwa_          90 AKRTYEEGLKHEANNPQLKEGL  111 (117)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHH
Confidence            4444444444444443333333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.4e-15  Score=124.64  Aligned_cols=130  Identities=18%  Similarity=0.155  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ   93 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   93 (476)
                      ++..|..+...|+|++|++.|.++   . +.++.+|+.+|.++..+|++++|+..|+++++++|+++.+|+.+|.++..+
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---Q-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---C-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence            446788999999999999999875   2 457788999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhccCCCc----------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 011845           94 GNIKKARQLLAKGLKFCGGN----------------EYIYQTLALLEAKANRYEQARNLFRQATKCNPKS  147 (476)
Q Consensus        94 ~~~~~A~~~~~~~~~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  147 (476)
                      |++++|+..|++++...+.+                ..+++.+|.++...|++++|++.+.+++...|..
T Consensus        84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            99999999999988754432                3567778888888888888888888888777754

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.4e-16  Score=115.87  Aligned_cols=106  Identities=16%  Similarity=0.086  Sum_probs=53.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH
Q 011845           85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN  164 (476)
Q Consensus        85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~  164 (476)
                      ..|..++..|++++|+.+|+++++.+|.++.+|..+|.+|...|++++|+..+.++++.+|+++.+|+.+|.++...|++
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845          165 LAARQLFERAVQASPKNRFAWHVWGI  190 (476)
Q Consensus       165 ~~A~~~~~~a~~~~~~~~~~~~~l~~  190 (476)
                      ++|+..|+++++.+|+++.++..++.
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            55555555555555555444444443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.4e-15  Score=124.48  Aligned_cols=132  Identities=12%  Similarity=0.078  Sum_probs=101.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCh
Q 011845          187 VWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNL  266 (476)
Q Consensus       187 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  266 (476)
                      ..|..+...|++++|++.|.++   .|.++.+++++|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence            4577777777888887777653   4556777778888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHHccCCCChh-------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH
Q 011845          267 DTARELYERALSIDSTTES-------------AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY  321 (476)
Q Consensus       267 ~~A~~~~~~a~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  321 (476)
                      ++|+..|++++...+.+..             ...+++++|.++...|++++|.+.|++++.+.|+..
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence            8888888887766544321             245678889999999999999999999998888753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.5e-15  Score=119.37  Aligned_cols=109  Identities=10%  Similarity=0.041  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 011845           49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN  128 (476)
Q Consensus        49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g  128 (476)
                      +...|..+++.|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            34456666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 011845          129 RYEQARNLFRQATKCNPKSCASWIAWSQM  157 (476)
Q Consensus       129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~  157 (476)
                      ++++|+..+++++.+.|+++.++..++.+
T Consensus        93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            66666666666666666666665555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.7e-15  Score=120.36  Aligned_cols=125  Identities=13%  Similarity=0.037  Sum_probs=113.5

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE   90 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   90 (476)
                      ++.+...|..+++.|+|++|+..|+++++.+ |.++.+|..+|.++...|++++|+..|+++++.+|.+..+|..+|.++
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            3567789999999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH--HhccHHHHHHH
Q 011845           91 LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA--KANRYEQARNL  136 (476)
Q Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--~~g~~~~A~~~  136 (476)
                      ...|++++|+..+++++.+.|.++.++..++.+..  ..+.+++|+..
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999888877653  33445555544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.6e-15  Score=124.72  Aligned_cols=103  Identities=10%  Similarity=-0.032  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845           46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA  125 (476)
Q Consensus        46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  125 (476)
                      +..+...|..++..|++++|+..|++++..+|.++.+|..+|.+|...|++++|+..|+++++++|+++.+|..+|.+|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34445556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhccHHHHHHHHHHHHhcCCCch
Q 011845          126 KANRYEQARNLFRQATKCNPKSC  148 (476)
Q Consensus       126 ~~g~~~~A~~~~~~~~~~~p~~~  148 (476)
                      .+|++++|+..|++++.+.|++.
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCcccH
Confidence            66666666666666666555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=3e-15  Score=124.33  Aligned_cols=119  Identities=13%  Similarity=0.033  Sum_probs=105.0

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL   89 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~   89 (476)
                      +++.+...|..++..|+|++|+..|++++... |.++.+|..+|.+|...|++++|+..|++++.++|+++.+|+.+|.+
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            55678899999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR  129 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  129 (476)
                      +..+|++++|+..|+++++++|.+...+...+..+...+.
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  121 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  121 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887654433333333333333

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.57  E-value=2.3e-12  Score=111.59  Aligned_cols=111  Identities=13%  Similarity=0.067  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHH
Q 011845          164 NLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK----YSTANLA  235 (476)
Q Consensus       164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A  235 (476)
                      ...|...+.+...  +.+...+..++.++..    ..+...+...++.+.+  +.++.+.+.+|.++..    ..++++|
T Consensus       126 ~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A  201 (265)
T d1ouva_         126 FKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEA  201 (265)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             hHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhh
Confidence            3444444444332  2334445555555543    2344455555555443  3355666666666655    4566666


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHccC
Q 011845          236 RKLFRRASEIDPRHQPVWIAWGWMEWK----EGNLDTARELYERALSID  280 (476)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~  280 (476)
                      +.+|+++.+.  .++.+++.+|.+|..    ..++++|+.+|+++....
T Consensus       202 ~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         202 LARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             hhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            6666666554  345666666666654    335666666666666554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.56  E-value=1.1e-12  Score=113.74  Aligned_cols=226  Identities=14%  Similarity=0.105  Sum_probs=187.4

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCcCcHHHHHH
Q 011845           10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENK----LGNIGKARELFDASTVADKGHIAAWHG   85 (476)
Q Consensus        10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~   85 (476)
                      ||++++.+|..+...|++++|+++|+++.+.   .++.+++.+|.+|..    ..++..|...++.+..  +.++.+...
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~---g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~   75 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHL   75 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhc
Confidence            5789999999999999999999999999765   478999999999987    6799999999999876  457788888


Q ss_pred             HHHHHHH----hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 011845           86 WAVLELR----QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKCNPKSCASWIAWSQM  157 (476)
Q Consensus        86 la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  157 (476)
                      +|.++..    ..+.+.|...++++....  ...+...++..+..    ......|...+.+...  +.+...+..+|.+
T Consensus        76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~  151 (265)
T d1ouva_          76 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSL  151 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred             cccccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhh
Confidence            8888765    468899999999998764  45666677776664    4467778888887665  4567888999999


Q ss_pred             HHH----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 011845          158 EMQ----QENNLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK-  228 (476)
Q Consensus       158 ~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-  228 (476)
                      +..    ..+...+..+++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+..  ++.+++.+|.+|.. 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G  227 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNG  227 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred             hccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcC
Confidence            986    4567788888888775  4578899999999987    678999999999998874  68999999999986 


Q ss_pred             ---cCCHHHHHHHHHHHhccCCC
Q 011845          229 ---YSTANLARKLFRRASEIDPR  248 (476)
Q Consensus       229 ---~~~~~~A~~~~~~~~~~~~~  248 (476)
                         ..++++|..+|+++......
T Consensus       228 ~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         228 EGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             CCCccCHHHHHHHHHHHHHCcCH
Confidence               44789999999999887643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.2e-13  Score=110.57  Aligned_cols=135  Identities=17%  Similarity=0.073  Sum_probs=82.8

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE   90 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   90 (476)
                      +..+...|..++..|+|++|+..|++++... +.........          .   ....      +-...++..+|.+|
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~-~~~~~~~~~~----------~---~~~~------~~~~~~~~nla~~y   72 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEE----------A---QKAQ------ALRLASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHH----------H---HHHH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhccccchHH----------H---hhhc------hhHHHHHHHHHHHH
Confidence            3455667788888888888888888887665 2221100000          0   0000      00123455667777


Q ss_pred             HHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHH
Q 011845           91 LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL  165 (476)
Q Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~  165 (476)
                      .++|++++|+..+++++.++|.++.+++.+|.+|..+|++++|+..|+++++++|+++.+...++.+....+...
T Consensus        73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777666666666665554444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.53  E-value=5.7e-14  Score=103.69  Aligned_cols=91  Identities=15%  Similarity=0.085  Sum_probs=48.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845           50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR  129 (476)
Q Consensus        50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  129 (476)
                      +.+|.++.+.|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|.+..++..+|.+|...|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHH
Q 011845          130 YEQARNLFRQA  140 (476)
Q Consensus       130 ~~~A~~~~~~~  140 (476)
                      +++|++.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.4e-13  Score=108.69  Aligned_cols=144  Identities=14%  Similarity=0.004  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      ..+...|..++..|++++|+..|++++...|..........          .....         -...++.++|.+|.+
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~----------~~~~~---------~~~~~~~nla~~y~k   74 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA----------QKAQA---------LRLASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH----------HHHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHH----------hhhch---------hHHHHHHHHHHHHHh
Confidence            34455677777777777777777777766554322111000          00000         012467889999999


Q ss_pred             hccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH-HH
Q 011845          127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK-LL  205 (476)
Q Consensus       127 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~  205 (476)
                      .|++++|+..+++++.++|+++.+++.+|.++...|++++|+..|+++++++|+++.+...++.+....+...+... .|
T Consensus        75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~  154 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY  154 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999877766655432 34


Q ss_pred             HHHH
Q 011845          206 KIGH  209 (476)
Q Consensus       206 ~~~~  209 (476)
                      .+++
T Consensus       155 ~~~f  158 (170)
T d1p5qa1         155 ANMF  158 (170)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.52  E-value=8.3e-14  Score=102.77  Aligned_cols=93  Identities=17%  Similarity=0.077  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845           83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE  162 (476)
Q Consensus        83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~  162 (476)
                      ++.+|.++.+.|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            45566666677777777777777777777666777777777777777777777777777777766667777777777777


Q ss_pred             cHHHHHHHHHHHH
Q 011845          163 NNLAARQLFERAV  175 (476)
Q Consensus       163 ~~~~A~~~~~~a~  175 (476)
                      ++++|++.+++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            7777766666654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.5e-14  Score=104.08  Aligned_cols=100  Identities=17%  Similarity=0.091  Sum_probs=41.2

Q ss_pred             HHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC---CHHHHHHHHHHhhccCCCc--HHHHHHHHHHHHHhcc
Q 011845           55 LENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG---NIKKARQLLAKGLKFCGGN--EYIYQTLALLEAKANR  129 (476)
Q Consensus        55 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~  129 (476)
                      .+...+++++|.+.|++++..+|.++.+++.+|.++...+   ++.+|+.+|++++..+|.+  ..+++.+|.+|...|+
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~   87 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE   87 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh
Confidence            3334444444444444444444444444444444443322   2223444444444433322  2234444444444444


Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHH
Q 011845          130 YEQARNLFRQATKCNPKSCASWIAW  154 (476)
Q Consensus       130 ~~~A~~~~~~~~~~~p~~~~~~~~l  154 (476)
                      +++|+.+|+++++++|++..+...+
T Consensus        88 ~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          88 YEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            4444444444444444444443333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.5e-13  Score=101.18  Aligned_cols=103  Identities=9%  Similarity=0.003  Sum_probs=46.1

Q ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---hccHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHc
Q 011845          121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ---QENNLAARQLFERAVQASPKN--RFAWHVWGIFEANM  195 (476)
Q Consensus       121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~  195 (476)
                      +..+...+++++|.+.|++++..+|.++.+++++|.++..   .+++++|+..|++++..+|.+  ..+++.+|.+|...
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~   85 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL   85 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444433   223334444444444444332  22444444444444


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011845          196 GFIDKGKKLLKIGHAVNPRDPVLLQSLA  223 (476)
Q Consensus       196 ~~~~~A~~~~~~~~~~~~~~~~~~~~la  223 (476)
                      |++++|+.+|+++++++|++..+...++
T Consensus        86 g~~~~A~~~~~~aL~~~P~~~~A~~l~~  113 (122)
T d1nzna_          86 KEYEKALKYVRGLLQTEPQNNQAKELER  113 (122)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            4444444444444444444444443333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.49  E-value=4.1e-13  Score=105.21  Aligned_cols=132  Identities=14%  Similarity=-0.001  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL   91 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   91 (476)
                      ..+...|..++..|+|.+|+..|++++... +......             +.........     ....++.++|.+|.
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~-~~~~~~~-------------~~~~~~~~~~-----~~~~~~~Nla~~~~   78 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWD-------------DQILLDKKKN-----IEISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCC-------------CHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cchhhhh-------------hHHHHHhhhh-----HHHHHHhhHHHHHH
Confidence            345667888888888888888888887654 2111000             0000000000     01235566777777


Q ss_pred             HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845           92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE  162 (476)
Q Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~  162 (476)
                      ++|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+..+.+
T Consensus        79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777766665443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.48  E-value=9.6e-13  Score=104.97  Aligned_cols=134  Identities=18%  Similarity=0.117  Sum_probs=77.7

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE   90 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   90 (476)
                      +..+...|..++..|+|.+|+..|++++... +.....            ..+.. .      ...+....++.++|.+|
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~-~~~~~~------------~~~~~-~------~~~~~~~~~~~Nla~~~   74 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL-EMEYGL------------SEKES-K------ASESFLLAAFLNLAMCY   74 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSC------------CHHHH-H------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhhcc------------chhhh-h------hcchhHHHHHHhHHHHH
Confidence            3456667777777777777777777776543 111000            00000 0      00011123445566666


Q ss_pred             HHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH
Q 011845           91 LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN  164 (476)
Q Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~  164 (476)
                      ...|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|++++.++|++..++..++.+....+..
T Consensus        75 ~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            66666666666666666666666666666666666666666666666666666666666666666665555444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.48  E-value=6.9e-13  Score=106.09  Aligned_cols=131  Identities=12%  Similarity=-0.017  Sum_probs=70.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845           50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR  129 (476)
Q Consensus        50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  129 (476)
                      ...|..++..|++.+|+..|.+++...+..                  .+...........|....++.++|.++.+.|+
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~   92 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMSD   92 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhcc
Confidence            344566666666666666666665432111                  00111112223334445555555666666666


Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH
Q 011845          130 YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFI  198 (476)
Q Consensus       130 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  198 (476)
                      +++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+...++.+.......
T Consensus        93 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1          93 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666666666555555555555444333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=4.3e-13  Score=107.31  Aligned_cols=137  Identities=12%  Similarity=0.034  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHH
Q 011845           13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELR   92 (476)
Q Consensus        13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   92 (476)
                      .+...|..++..|+|.+|+..|++++... +.                  ..+..........+|....++..+|.++.+
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~-~~------------------~~~~~~~~~~~~~~~~~~~~~~nla~~~~~   89 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EG------------------SRAAAEDADGAKLQPVALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH------------------HHHHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh-hh------------------hhhhhhhHHHHHhChhhHHHHHHHHHHHHh
Confidence            45667889999999999999999987543 10                  111111223345567777888889999999


Q ss_pred             hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH
Q 011845           93 QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR  168 (476)
Q Consensus        93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~  168 (476)
                      .|++++|+..+.++++++|.++.+++.+|.+|..+|++++|+..|+++++++|++..+...++.+........++.
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998888888888887766665543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.47  E-value=8.3e-13  Score=103.42  Aligned_cols=132  Identities=11%  Similarity=-0.054  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      ..+...|..++..|+|.+|+..|.+++...+......             +.........+     ...++.++|.+|..
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-------------~~~~~~~~~~~-----~~~~~~Nla~~~~~   79 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-------------DQILLDKKKNI-----EISCNLNLATCYNK   79 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-------------CHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-------------hHHHHHhhhhH-----HHHHHhhHHHHHHH
Confidence            3455667778888888888888888876544322100             00000000000     12467889999999


Q ss_pred             hccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 011845          127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG  196 (476)
Q Consensus       127 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  196 (476)
                      +|++++|+..++++++.+|.+..+|+.+|.++...|++++|+..|+++++++|++..+...+..+..+.+
T Consensus        80 l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998888776543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.46  E-value=2e-12  Score=103.09  Aligned_cols=145  Identities=12%  Similarity=-0.004  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      ..+...|..++..|++.+|+..|.+++...+........          .....         .+....++.++|.+|..
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~----------~~~~~---------~~~~~~~~~Nla~~~~~   76 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK----------ESKAS---------ESFLLAAFLNLAMCYLK   76 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH----------HHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh----------hhhhc---------chhHHHHHHhHHHHHHH
Confidence            445566777777777777777777776543321100000          00000         01123467889999999


Q ss_pred             hccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH-HHHHH
Q 011845          127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDK-GKKLL  205 (476)
Q Consensus       127 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~  205 (476)
                      +|++++|+..+++++.++|++..+++.+|.++...|++++|+..|++++.++|++..+...++.+....+.+.+ ....|
T Consensus        77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~  156 (168)
T d1kt1a1          77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTY  156 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999877766543 45555


Q ss_pred             HHHHh
Q 011845          206 KIGHA  210 (476)
Q Consensus       206 ~~~~~  210 (476)
                      .++++
T Consensus       157 ~~~f~  161 (168)
T d1kt1a1         157 ANMFK  161 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.44  E-value=3.4e-13  Score=104.36  Aligned_cols=71  Identities=8%  Similarity=0.035  Sum_probs=36.5

Q ss_pred             HHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCC----------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845           57 NKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGN----------IKKARQLLAKGLKFCGGNEYIYQTLALLEAK  126 (476)
Q Consensus        57 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  126 (476)
                      .+.+.|++|+..|+++++.+|+++.+++.+|.++...++          +++|+..|+++++++|+++.+++.+|.+|..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence            344455666666666666666666666666665554333          2344444444444444444444444444443


Q ss_pred             h
Q 011845          127 A  127 (476)
Q Consensus       127 ~  127 (476)
                      .
T Consensus        88 ~   88 (145)
T d1zu2a1          88 F   88 (145)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.5e-13  Score=99.61  Aligned_cols=102  Identities=20%  Similarity=0.261  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH----HHHHHHH
Q 011845          218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA----ARCLQAW  293 (476)
Q Consensus       218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~l  293 (476)
                      .+..+|..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|.+...    ..++..+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            345677777777888888888888888888777788888888888888888888888887776655432    3456777


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845          294 GVLEQRVGNLSAARRLFRSSLNINSQ  319 (476)
Q Consensus       294 ~~~~~~~g~~~~A~~~~~~al~~~p~  319 (476)
                      |.++...+++++|+.+|++++..+++
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            88888888888888888888887765

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=4.7e-13  Score=103.55  Aligned_cols=102  Identities=16%  Similarity=0.007  Sum_probs=61.9

Q ss_pred             HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845           90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA----------NRYEQARNLFRQATKCNPKSCASWIAWSQMEM  159 (476)
Q Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  159 (476)
                      +.+.+.+++|+..|+++++++|+++.++..+|.++...          +.+++|+..|+++++++|+++.+|+.+|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            34556677777777777777777777777777777644          33456666666666666666666666666665


Q ss_pred             Hhcc-----------HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 011845          160 QQEN-----------NLAARQLFERAVQASPKNRFAWHVWGIF  191 (476)
Q Consensus       160 ~~~~-----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~  191 (476)
                      ..|+           +++|+..|+++++++|++...+..++.+
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            5443           3444444444444444444444444433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.3e-12  Score=96.55  Aligned_cols=95  Identities=11%  Similarity=0.129  Sum_probs=40.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh-------HHHHHHHH
Q 011845           85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA-------SWIAWSQM  157 (476)
Q Consensus        85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~la~~  157 (476)
                      .+|..++..|+|++|+.+|.++++++|.++.++..+|.+|..+|++++|+..++++++++|.+..       ++..+|.+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444433322       22233333


Q ss_pred             HHHhccHHHHHHHHHHHHHcCC
Q 011845          158 EMQQENNLAARQLFERAVQASP  179 (476)
Q Consensus       158 ~~~~~~~~~A~~~~~~a~~~~~  179 (476)
                      +...+++++|+.+|++++..++
T Consensus        89 ~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCC
Confidence            3344444444444444444433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.3e-11  Score=84.71  Aligned_cols=84  Identities=15%  Similarity=0.078  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 011845          250 QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE----SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWM  325 (476)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  325 (476)
                      ++-++.+|.++.+.|+|.+|+.+|++++++.|.+.    ....++.++|.++.+.|++++|+.+|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            45677889999999999999999999988754432    23567888999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 011845          326 TWAQLEED  333 (476)
Q Consensus       326 ~l~~~~~~  333 (476)
                      +++.+...
T Consensus        85 Nl~~~~~~   92 (95)
T d1tjca_          85 NLKYFEYI   92 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98776544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.13  E-value=1.7e-10  Score=90.37  Aligned_cols=99  Identities=15%  Similarity=0.059  Sum_probs=62.8

Q ss_pred             HHHHHHcCChhHHHHHHHHHHccCCCChh---------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--------
Q 011845          257 GWMEWKEGNLDTARELYERALSIDSTTES---------AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ--------  319 (476)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------  319 (476)
                      |..++..|+|++|+..|++++++.|+.+.         ...++.++|.+|..+|++++|+..+++++.+.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            55666666777777777777666554432         2345667777777777777777777777765332        


Q ss_pred             ---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845          320 ---SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV  355 (476)
Q Consensus       320 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  355 (476)
                         ...+++++|.++..+|++++|+..|+++++..++..
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence               123556667777777777777776666666555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.11  E-value=1.4e-10  Score=90.83  Aligned_cols=97  Identities=14%  Similarity=0.019  Sum_probs=68.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCC------------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC-------C
Q 011845          223 ALLEYKYSTANLARKLFRRASEIDPRH------------QPVWIAWGWMEWKEGNLDTARELYERALSIDST-------T  283 (476)
Q Consensus       223 a~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-------~  283 (476)
                      |..++..|++++|+..|++++++.|+.            ..+|.++|.+|...|++++|+..+++++.+.|.       .
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            555556666666666666666655432            246778888888888888888888888765331       1


Q ss_pred             -hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845          284 -ESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ  319 (476)
Q Consensus       284 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  319 (476)
                       +....+++++|.+|..+|++++|+..|++++++.|.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence             122446788899999999999999999999887543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.3e-10  Score=80.01  Aligned_cols=25  Identities=16%  Similarity=0.142  Sum_probs=10.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhh
Q 011845           14 YVALGKVLSKQSKVAEARAIYAKGS   38 (476)
Q Consensus        14 ~~~la~~~~~~g~~~~A~~~~~~~~   38 (476)
                      ++.+|.++++.|+|++|+..|++++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al   32 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQAL   32 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3344444444444444444444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.09  E-value=2e-10  Score=97.70  Aligned_cols=129  Identities=14%  Similarity=0.007  Sum_probs=76.7

Q ss_pred             HHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHH
Q 011845           19 KVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKK   98 (476)
Q Consensus        19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~   98 (476)
                      +-.+..|++++|+..|+++++.. |.++..+..++.+++..|++++|+..|+++++.+|++..++..++.++...+...+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            34455666666666666666665 66666666666666666666666666666666666666666666666655555554


Q ss_pred             HHHHHHHhhcc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch
Q 011845           99 ARQLLAKGLKF-CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC  148 (476)
Q Consensus        99 A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  148 (476)
                      +...+.+.... .|.....+...+.++...|++++|...+.++.+..|..+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            44433332222 233344455556666666666666666666666665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.07  E-value=1.9e-10  Score=97.77  Aligned_cols=127  Identities=13%  Similarity=0.044  Sum_probs=76.7

Q ss_pred             HHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHH
Q 011845           56 ENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARN  135 (476)
Q Consensus        56 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~  135 (476)
                      .+..|++++|+..|+++++.+|.+..++..++.++...|++++|+..|+++++++|++..++..++.++...+..+++..
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666655555554443


Q ss_pred             HHHHHHh-cCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845          136 LFRQATK-CNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR  182 (476)
Q Consensus       136 ~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  182 (476)
                      .+.+... ..|.....+...+.++...|++++|...+.++.+..|..+
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            3322221 1233344455556666666666666666666666665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=9.8e-09  Score=81.61  Aligned_cols=117  Identities=11%  Similarity=-0.082  Sum_probs=63.2

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845           11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE   90 (476)
Q Consensus        11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   90 (476)
                      .+.+...|......|++++|+..|.+++... +........       .+.+     .........+....++..++.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l~~~~-------~~~w-----~~~~r~~l~~~~~~a~~~la~~~   77 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREW-RGPVLDDLR-------DFQF-----VEPFATALVEDKVLAHTAKAEAE   77 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTTGGGT-------TSTT-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccccccCc-------chHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666777777777777766654 322211000       0000     00111112233445556666666


Q ss_pred             HHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845           91 LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQA  140 (476)
Q Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  140 (476)
                      ...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus        78 ~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          78 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666655

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=1.5e-08  Score=80.43  Aligned_cols=61  Identities=10%  Similarity=-0.087  Sum_probs=33.2

Q ss_pred             hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845          148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIG  208 (476)
Q Consensus       148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  208 (476)
                      ..++..++.++...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555555555555544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=4.6e-06  Score=59.64  Aligned_cols=80  Identities=6%  Similarity=-0.078  Sum_probs=55.3

Q ss_pred             CChHHHHHHHHHHHHcC---CHHHHHHHHHHHhhcCcCcH-HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHH
Q 011845           44 ENPYIWQCWAVLENKLG---NIGKARELFDASTVADKGHI-AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQT  119 (476)
Q Consensus        44 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  119 (476)
                      ..+...+.+|.++.+..   +..+++.+|+.++..+|.+. +.++.+|..|++.|++++|..+++++++++|++..+...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            34667777777777554   34577777777777776553 677777777777777777777777777777777766544


Q ss_pred             HHHH
Q 011845          120 LALL  123 (476)
Q Consensus       120 la~~  123 (476)
                      .-.+
T Consensus       113 ~~~I  116 (124)
T d2pqrb1         113 KSMV  116 (124)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.27  E-value=9.6e-06  Score=60.48  Aligned_cols=109  Identities=14%  Similarity=0.071  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHH----hCCHHHHHH
Q 011845           26 KVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELR----QGNIKKARQ  101 (476)
Q Consensus        26 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~  101 (476)
                      ++++|+.+|+++.+..   ++...+.++.  ....+.++|+.+|+++.+.  .++.+.+.+|.+|..    ..++.+|+.
T Consensus         8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            5677777777776554   3444444443  2334566666666666543  455666666666654    345566666


Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhc
Q 011845          102 LLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKC  143 (476)
Q Consensus       102 ~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~  143 (476)
                      +|+++.+.  .++.+.+.+|.+|..    ..+..+|+.+|+++.+.
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            66666543  345555556665554    23555566666655554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=9.4e-06  Score=57.99  Aligned_cols=72  Identities=8%  Similarity=-0.088  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHh---ccHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHH
Q 011845          114 EYIYQTLALLEAKA---NRYEQARNLFRQATKCNPKS-CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW  185 (476)
Q Consensus       114 ~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  185 (476)
                      ..+.+.+|.++.+.   .+.++++.+++.+++.+|.+ .+.++.+|..|.+.|++++|..+++++++++|++..+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            34445555555433   23445555555555555443 24555555555555555555555555555555555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.16  E-value=3.7e-05  Score=57.14  Aligned_cols=79  Identities=14%  Similarity=0.095  Sum_probs=36.1

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCChhH
Q 011845          197 FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK----EGNLDT  268 (476)
Q Consensus       197 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~  268 (476)
                      +.++|+..++++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+.  .++.+.+.+|.+|..    ..++.+
T Consensus        38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~  113 (133)
T d1klxa_          38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ  113 (133)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHH
Confidence            334444444444332  234444444444433    23445555555555443  234455555555544    234555


Q ss_pred             HHHHHHHHHcc
Q 011845          269 ARELYERALSI  279 (476)
Q Consensus       269 A~~~~~~a~~~  279 (476)
                      |+.+|+++.+.
T Consensus       114 A~~~~~~Aa~~  124 (133)
T d1klxa_         114 AVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            55555555544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=0.0053  Score=55.73  Aligned_cols=118  Identities=10%  Similarity=-0.007  Sum_probs=65.3

Q ss_pred             HhccHHHHHHHHHHHHHcCCCcHHHHHHHH----HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 011845          160 QQENNLAARQLFERAVQASPKNRFAWHVWG----IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA  235 (476)
Q Consensus       160 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  235 (476)
                      ...+.+.|...+.......+.....+....    ..+...+..+.+...+........+ ......++......+++..+
T Consensus       226 a~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHH
T ss_pred             hccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc-hHHHHHHHHHHHHcCChHHH
Confidence            345666677766666555444433322222    2222345556666666655544433 33322333334555677777


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845          236 RKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALS  278 (476)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  278 (476)
                      ...+..+.......+...+-+|..+...|+.+.|..+|..+..
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            7776655433334455667777777777777777777777654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=0.0069  Score=54.92  Aligned_cols=350  Identities=8%  Similarity=-0.061  Sum_probs=196.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHH--HcCCHHHHHHHHHHHhhcCcCcHHHH---HHH
Q 011845           12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLEN--KLGNIGKARELFDASTVADKGHIAAW---HGW   86 (476)
Q Consensus        12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~---~~l   86 (476)
                      ...+..+.-.+..|++.++.....++ +.. |--+  |..+-.+..  ......+    +...++.+|+.+...   ...
T Consensus         7 r~~y~~a~~a~~~~~~~~~~~~~~~L-~dy-pL~p--Yl~~~~l~~~~~~~~~~~----i~~Fl~~~p~~P~~~~lr~~~   78 (450)
T d1qsaa1           7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDY-PLYP--YLEYRQITDDLMNQPAVT----VTNFVRANPTLPPARTLQSRF   78 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSGGG-TTS-TTHH--HHHHHHHHHTGGGCCHHH----HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhhh-cCC-CCHH--HHHHHHHHhccccCCHHH----HHHHHHHCCCChhHHHHHHHH
Confidence            45678888899999999988877776 333 3222  222222222  2334444    344556678776543   233


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH----------------
Q 011845           87 AVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS----------------  150 (476)
Q Consensus        87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----------------  150 (476)
                      ...+...+++...+..+    ...|.+....+.++.+....|+..+|...+..+.......+..                
T Consensus        79 l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~  154 (450)
T d1qsaa1          79 VNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP  154 (450)
T ss_dssp             HHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred             HHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCH
Confidence            44566777877655433    4567788888888999999999999998888777654433322                


Q ss_pred             --HHHHHHHHHHhccHHHHHHHHHHH-------------HHcCCC-----------cHH--HHHHHHHHHHHcCCHHHHH
Q 011845          151 --WIAWSQMEMQQENNLAARQLFERA-------------VQASPK-----------NRF--AWHVWGIFEANMGFIDKGK  202 (476)
Q Consensus       151 --~~~la~~~~~~~~~~~A~~~~~~a-------------~~~~~~-----------~~~--~~~~l~~~~~~~~~~~~A~  202 (476)
                        +...+......|++..|...+..+             +...|.           +..  .....+..-....+.+.|.
T Consensus       155 ~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~  234 (450)
T d1qsaa1         155 LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENAR  234 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHH
Confidence              223334444455555444433210             111111           111  1112222223345667777


Q ss_pred             HHHHHHHhcCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845          203 KLLKIGHAVNPRDPVLLQSLA----LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALS  278 (476)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~la----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  278 (476)
                      ..+.......+.....+....    ..+...+..+.+...+........+.......++ .....+++..+...+.....
T Consensus       235 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~  313 (450)
T d1qsaa1         235 LMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPM  313 (450)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCT
T ss_pred             HHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCc
Confidence            777766655554444333222    2223345566676666666554444333333333 34456778777777765422


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH-----------------------------HHHHHHHH
Q 011845          279 IDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY-----------------------------ITWMTWAQ  329 (476)
Q Consensus       279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------------------~~~~~l~~  329 (476)
                       .+.  ......+-+|..+...|+.++|..+|..+... ++..                             ..-...+.
T Consensus       314 -~~~--~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~  389 (450)
T d1qsaa1         314 -EAK--EKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVR  389 (450)
T ss_dssp             -TGG--GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHH
T ss_pred             -ccc--cHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHH
Confidence             222  22344566788888888888888888876542 1100                             01234456


Q ss_pred             HHHHcCChHHHHHHHHHHHhh-hhhhcchhhhhhhhcccchHHHHHHHHH
Q 011845          330 LEEDQGNSVRAEEIRNLYFQQ-RTEVVDDASWVMGFMDIIDPALDRIKQL  378 (476)
Q Consensus       330 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a  378 (476)
                      .+...|....|...+...... .+.-...++.+....|.++.|+....++
T Consensus       390 ~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         390 ELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            666777777777766655542 2233345566677777777777766655

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.80  E-value=0.0081  Score=51.51  Aligned_cols=274  Identities=10%  Similarity=-0.001  Sum_probs=140.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC
Q 011845           15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG   94 (476)
Q Consensus        15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~   94 (476)
                      -..|..+...|.|+.|..+|...     .+    +..++.++.+.+++..|.+.+.+.     ++...|......+....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~-----~d----~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~   83 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNV-----SN----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK   83 (336)
T ss_dssp             -----------CTTTHHHHHHHT-----TC----HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhC-----CC----HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCc
Confidence            44677778888888888888765     11    334556777888888888887765     45677887777777776


Q ss_pred             CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845           95 NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA  174 (476)
Q Consensus        95 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  174 (476)
                      ...-|.-+ ....   ..++.-...+...|...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-.+.++..
T Consensus        84 e~~la~i~-~~~~---~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~  158 (336)
T d1b89a_          84 EFRLAQMC-GLHI---VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF  158 (336)
T ss_dssp             CHHHHHHT-TTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHh---hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc
Confidence            66544221 1111   1234444567777788888888888888888777777777778888776643 33333333321


Q ss_pred             HHcCCCcH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845          175 VQASPKNR----------FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASE  244 (476)
Q Consensus       175 ~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  244 (476)
                      -  +.-+.          ..|-.+..+|.+.|+++.|+..+-.    .|.+..-....-.++.+..              
T Consensus       159 s--~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~----~~~~~~~~~~f~e~~~k~~--------------  218 (336)
T d1b89a_         159 W--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN----HPTDAWKEGQFKDIITKVA--------------  218 (336)
T ss_dssp             S--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH----STTTTCCHHHHHHHHHHCS--------------
T ss_pred             c--ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH----cchhhhhHHHHHHHHHccC--------------
Confidence            1  11111          1122333344444444444333221    1111100111111111111              


Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH
Q 011845          245 IDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITW  324 (476)
Q Consensus       245 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  324 (476)
                          +++.+......|... +.+--...+....... +.       ..+.....+.+++.-...+++....  .++..+.
T Consensus       219 ----N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~~-d~-------~r~V~~~~k~~~l~li~p~Le~v~~--~n~~~vn  283 (336)
T d1b89a_         219 ----NVELYYRAIQFYLEF-KPLLLNDLLMVLSPRL-DH-------TRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVN  283 (336)
T ss_dssp             ----STHHHHHHHHHHHHH-CGGGHHHHHHHHGGGC-CH-------HHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHH
T ss_pred             ----ChHHHHHHHHHHHHc-CHHHHHHHHHHhccCC-CH-------HHHHHHHHhcCCcHHHHHHHHHHHH--cChHHHH
Confidence                233333333333332 1222222222211111 11       1224455677777777888877654  3356788


Q ss_pred             HHHHHHHHHcCChHHHHH
Q 011845          325 MTWAQLEEDQGNSVRAEE  342 (476)
Q Consensus       325 ~~l~~~~~~~g~~~~A~~  342 (476)
                      ..+..+|...++++.-..
T Consensus       284 ~al~~lyie~~d~~~l~~  301 (336)
T d1b89a_         284 ESLNNLFITEEDYQALRT  301 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCcchhHHHHH
Confidence            999999999999765333

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.48  E-value=0.024  Score=48.45  Aligned_cols=183  Identities=11%  Similarity=0.053  Sum_probs=112.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCC
Q 011845           16 ALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGN   95 (476)
Q Consensus        16 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~   95 (476)
                      .+..++...++++.|.+.+.+.      .++.+|......+.+.....-|..+ ....   ..+++-.......+...|.
T Consensus        45 rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la~i~-~~~~---~~~~d~l~~~v~~ye~~~~  114 (336)
T d1b89a_          45 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC-GLHI---VVHADELEELINYYQDRGY  114 (336)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHT-TTTT---TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHHHHH-HHHh---hcCHHHHHHHHHHHHHcCC
Confidence            3455666777777777776654      4678898888888887776554221 1111   1344555667888899999


Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCC-------chhHHHHHHHHHHHhccHHHH
Q 011845           96 IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATK-CNPK-------SCASWIAWSQMEMQQENNLAA  167 (476)
Q Consensus        96 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~-------~~~~~~~la~~~~~~~~~~~A  167 (476)
                      +++.+.+++..+...+.+...+..++.+|.+.+ .++-.+.++.... .++.       ....|-.+..+|.+.|++++|
T Consensus       115 ~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A  193 (336)
T d1b89a_         115 FEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA  193 (336)
T ss_dssp             HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHH
Confidence            999999999999888888999999999888765 4455555544311 1111       112345667777788888887


Q ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011845          168 RQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNP  213 (476)
Q Consensus       168 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  213 (476)
                      +..+-.    .|.+..-......++.+..+.+..-+.+.-.+...|
T Consensus       194 ~~~~i~----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p  235 (336)
T d1b89a_         194 IITMMN----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP  235 (336)
T ss_dssp             HHHHHH----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred             HHHHHH----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCH
Confidence            765433    222111122233344455555544444444444333

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.79  E-value=3.6  Score=32.15  Aligned_cols=59  Identities=12%  Similarity=0.062  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHH-hccHHHHHHHHHHH
Q 011845          116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCA-SWIAWSQMEMQ-QENNLAARQLFERA  174 (476)
Q Consensus       116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~-~~~~~~A~~~~~~a  174 (476)
                      -+..+|.+..+.++|++.+.+.+++++.++.-.. -...+..+|-. .|....+.+.+...
T Consensus         5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~i   65 (230)
T d2o02a1           5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSI   65 (230)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3456667777777777777777777776654322 23333333322 34445555555443

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=86.58  E-value=6  Score=30.94  Aligned_cols=49  Identities=12%  Similarity=0.158  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHc-----cCCCChhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHh
Q 011845          267 DTARELYERALS-----IDSTTESAARCLQAWGVLEQR-VGNLSAARRLFRSSLN  315 (476)
Q Consensus       267 ~~A~~~~~~a~~-----~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~  315 (476)
                      +.|...|+.|..     +.|.+|....+..+.+..++. .|+.++|.+.-++++.
T Consensus       148 ~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         148 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555555543     466676665555666665554 4777777777776654

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=82.02  E-value=9.8  Score=29.68  Aligned_cols=50  Identities=8%  Similarity=0.149  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHh-----hCCCcHH---HHHHHHHHHHH-cCChHHHHHHHHHHHhhhh
Q 011845          303 LSAARRLFRSSLN-----INSQSYI---TWMTWAQLEED-QGNSVRAEEIRNLYFQQRT  352 (476)
Q Consensus       303 ~~~A~~~~~~al~-----~~p~~~~---~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~  352 (476)
                      .+.|...|+.|+.     +.|.+|.   ...+++.++.. .|+.++|.++.+.++....
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~ai  205 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI  205 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4567777777764     3566763   44566666554 6999999999888876443