Citrus Sinensis ID: 011852

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
Protein Sequence
MESNLYFSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEEccccEEEcccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEEEccccccccccHHHHccccccccEEEEEEcccccEEEEcccccccccccccEEEEccEEcccccccccccccccccccccccccEEEccccccEEEEcccccccccccccEEEEEEEEcccccccccccccccccccccccccccccEEEEccccEEEEEEEccEEEEEcccccccccccccccccccEEEEEcccccccccEEEEEcccccccccccccccEEEEEEEEccEEEEEEcccccEEEEEEEccEEEEEEEcccEEEEEEEEEcccccEEEcccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEcEEEEEEEccccccccEEccccHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEcccccccccccccccEEEEcccccccccccEEEEccccccccccccccEEcccccccccccccccccccccccccEEEEEEEEEccccccEEEEEEEcccccccccccHEEHHccccccccccEEEEcccccEEEEEcccccHccccccEEEEccccccccccccccccccHHHHHHHHHcccEEcccccccEEcccccccccccccEEEEEEEEEccccccccccccccccccHHHccccccccEEEEEccEEEEEEEEccEEEEEccccEEEEccccccccccEEEEEEcccccccccEEEEEEcccccccccccccEEEEEEEEEccEEEEEEEcccEEEEEEccccEEEEEEEccEEEEEEEEEccccccEcccccccccccHHHHHccccEEEEEEEEEEccccccEEEEEEcccccEEEEcccccccccccccccHHHHHHHccccccHHHHHccccccccccc
Coil and Loop (DISEMBL)
mesnlyfsqnlgfrtvehpdstlrpllytkrrHFNRVLVLASSaqtvggvsvnpvykptprnrelrtphsgyhfdgstrrffegwyfrvsiperkqSFCIIYsvenpafkkKLSSLEvaqhgprftgvGVQILgaddkymchyseessnfwgsrHELMLgntfradkgsqpptkevppqefnrrvlegfqvtplwhqgcihddgrtNFAETVKSARWeystrpvygwgnvgskqnstagwlaafpvfephwqicmagglstgwiewdgerfefqdapsyseknwggafprkwFWVQCNVFEGATGEValtaggglrqlpvldsfeNAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELkattkypgttlraptseaglapackdtcfGELTLQLWERRydgtkgkmiLDVTSDMAAlevgggpwfntwkaktatpellrrtlnvpvdvdglfgfvpffkppgl
Flexible Loop (DISEMBL)
mesnlyfsqnlgfrtvehpdstLRPLLYTKRRHFNRVLVLassaqtvggvsvnpvykptprnrelrtphsgyhfdgstrRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFradkgsqpptkevppqefNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFgfvpffkppgl
Low Complexity Region (SEG)
MESNLYFSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Disordered region (IsUnstruct)
*****YFSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVY*************SGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLG**********************RRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFF*****
Disordered Region (DISOPRED)
******F**NLGFRT**************************************************RTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSS****QHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPG*
Disordered Region (DISEMBL)
MESNLYFSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRA************PQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Disordered Region (DISPRO)
********QNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVL*********VSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESNLYFSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	476	2.2.26 [Sep-21-2011]
Q94FY7	488	Tocopherol cyclase, chlor	yes	no	0.972	0.948	0.705	0.0
Q6K7V6	470	Probable tocopherol cycla	yes	no	0.886	0.897	0.702	0.0
Q94FY8	474	Probable tocopherol cycla	N/A	no	0.945	0.949	0.657	0.0

>sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/468 (70%), Positives = 384/468 (82%), Gaps = 5/468 (1%)

Query: 14  RTVEHPDSTLRPLLYTKR--RHFNRVLVLASSAQT-VGGVSVNPVYKPTPRNRELRTPHS 70
           R V     +L P   TK   R  +RV    S+  +    +SV PVY PT  NRELRTPHS
Sbjct: 21  RPVSPLTRSLVPFRSTKLVPRSISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHS 80

Query: 71  GYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGV 130
           GYHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPAF++ LS LEVA +GPRFTGVG 
Sbjct: 81  GYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGA 140

Query: 131 QILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQ 190
           QILGA+DKY+C Y ++S NFWG RHEL+LGNTF A  G++ P KEVPP+EFNRRV EGFQ
Sbjct: 141 QILGANDKYLCQYEQDSHNFWGDRHELVLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQ 200

Query: 191 VTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPH 250
            TP WHQG I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ STAGW AAFPVFEPH
Sbjct: 201 ATPFWHQGHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPH 260

Query: 251 WQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALT 310
           WQICMAGGLSTGWIEW GERFEF+DAPSYSEKNWGG FPRKWFWVQCNVFEGATGEVALT
Sbjct: 261 WQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEVALT 320

Query: 311 AGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMV 369
           AGGGLRQLP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S WGYWY  AEN+ H+V
Sbjct: 321 AGGGLRQLPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPWGYWYITAENENHVV 380

Query: 370 ELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAA 429
           EL+A T   GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+KGK+IL+  S MAA
Sbjct: 381 ELEARTNEAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAA 440

Query: 430 LEVGGGPWFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPPGL 476
           +E+GGGPWF TWK  T+ TPELL++ L VP+D++   G VPFFKPPGL
Sbjct: 441 VEIGGGPWFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPPGL 488

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6K7V6|TOCC_ORYSJ Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE1 PE=2 SV=1

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/423 (70%), Positives = 352/423 (83%), Gaps = 1/423 (0%)

Query: 54  PVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKL 113
           PVY PTPR+R LRTPHSGYH+DG+ R FFEGWYF+VSIPE +QSFC +YSVENP F+  +
Sbjct: 49  PVYAPTPRDRALRTPHSGYHYDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGM 108

Query: 114 SSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPT 173
           S L+   HG RFTGVG QILGADDKY+C ++E+S+NFWGSRHELMLGNTF  + GS PP 
Sbjct: 109 SDLDRVIHGSRFTGVGAQILGADDKYICQFTEKSNNFWGSRHELMLGNTFIPNNGSTPPE 168

Query: 174 KEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSK 233
            EVPPQEF+ RVLEGFQVTP+WHQG I DDGR+ +   V++ARWEYSTRPVYGWG+V SK
Sbjct: 169 GEVPPQEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDVTSK 228

Query: 234 QNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWF 293
           Q STAGWLAAFP FEPHWQICMAGGLSTGWIEWDGERFEF++APSYSEKNWG  FPRKW+
Sbjct: 229 QKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWY 288

Query: 294 WVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEIS 353
           WVQCNVF GA+GEVALTA GGLR++ + +++E+ ++IGIHY+G  YEFVPW G VSW+I+
Sbjct: 289 WVQCNVFSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIA 348

Query: 354 QWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYD 413
            WG+W  + EN+ H+VE++ATTK PGT LRAPT EAGL PACKDTC+G+L LQ+WE+R D
Sbjct: 349 PWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRND 408

Query: 414 GTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKP 473
           G KGKMILD TS+MAALEVGGGPWFN WK  T + E++   +   VDV+ LF  +PF KP
Sbjct: 409 GGKGKMILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVVGTQVDVESLFP-IPFLKP 467

Query: 474 PGL 476
           PGL
Sbjct: 468 PGL 470

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94FY8|TOCC_MAIZE Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1

 Score =  638 bits (1645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/456 (65%), Positives = 366/456 (80%), Gaps = 6/456 (1%)

Query: 26  LLYTKRRHFNRVLVLASSAQTVGG-----VSVNPVYKPTPRNRELRTPHSGYHFDGSTRR 80
           L  + RRH  R +V  +++ +V        +  P+Y PTP++R LRTPHSGYHFDG+ R 
Sbjct: 20  LPRSSRRHCPRGVVPRAASSSVSSFTSPSAAAAPIYTPTPQDRSLRTPHSGYHFDGTARP 79

Query: 81  FFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYM 140
           FFEGWYF+VSIPE +QSFC +YSVENP F+  +S L+   + PRFTGVG QILGADDKY+
Sbjct: 80  FFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDKLLYRPRFTGVGAQILGADDKYI 139

Query: 141 CHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCI 200
           C +SE+S+NFWGSRHELMLGNTF ++K S PP  EVPPQ+F+RRVLEG QVTP+WHQG I
Sbjct: 140 CQFSEKSNNFWGSRHELMLGNTFISNKESTPPQGEVPPQDFSRRVLEGLQVTPIWHQGFI 199

Query: 201 HDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLS 260
            DDGR+N+   V++ARWEYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMA GLS
Sbjct: 200 RDDGRSNYVPNVQTARWEYSTRPVYGWGDVKSKQLSTAGWLAAFPFFEPHWQICMARGLS 259

Query: 261 TGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPV 320
           TGWIEWDGERFEF++APSYSEKNWGG FPRKW+W+QCNVF GA+GEV+LTA GGLR++ +
Sbjct: 260 TGWIEWDGERFEFENAPSYSEKNWGGGFPRKWYWIQCNVFPGASGEVSLTAAGGLRKIGL 319

Query: 321 LDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGT 380
            D++E+ ++IGIHY+G  +EFVPW G VSW+I  WG W  + EN+TH+VE++ATT   GT
Sbjct: 320 GDTYESPSLIGIHYEGQFFEFVPWTGTVSWDIGLWGLWKMSGENKTHLVEIEATTAESGT 379

Query: 381 TLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNT 440
            LRAPT EAGL PACKDTC+G+L LQLWE++YDG+KG+MILD TS+MAALEVGGGPWFN 
Sbjct: 380 ALRAPTIEAGLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGPWFNG 439

Query: 441 WKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 476
           WK  T   E++   +  PVDV+ L   +PF KPPGL
Sbjct: 440 WKGTTVVNEVVNNIVGTPVDVESLLP-IPFLKPPGL 474

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
219842174	508	tocopherol cyclase [Hevea brasiliensis]	0.987	0.925	0.739	0.0
255551000	505	Tocopherol cyclase, chloroplast precurso	0.987	0.930	0.710	0.0
33188419	515	tocopherol cyclase [Eucalyptus gunnii]	0.886	0.819	0.801	0.0
225429977	502	PREDICTED: tocopherol cyclase, chloropla	0.915	0.868	0.775	0.0
356507907	489	PREDICTED: tocopherol cyclase, chloropla	0.964	0.938	0.721	0.0
356515597	480	PREDICTED: tocopherol cyclase, chloropla	0.936	0.929	0.736	0.0
388502842	479	unknown [Medicago truncatula]	0.943	0.937	0.731	0.0
159792908	494	chloroplast tocopherol cyclase [Sesamum	0.897	0.864	0.759	0.0
377657553	490	tocopherol cyclase [Brassica napus]	0.899	0.873	0.762	0.0
312283109	494	unnamed protein product [Thellungiella h	0.913	0.880	0.750	0.0

>gi|219842174|dbj|BAH10644.1| tocopherol cyclase [Hevea brasiliensis]

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/496 (73%), Positives = 411/496 (82%), Gaps = 26/496 (5%)

Query: 6   YFSQNLGFRTVEHPDSTLRPLLYTK--------------RRHFNRVLVLASSAQ------ 45
           +FS N+GF  + +P STL+P    +              R   +R+LV  S         
Sbjct: 14  HFSSNMGFPAL-NPCSTLKPFRLNQSSVGIHWRSLQVGFRSSRSRLLVSNSVTDRQTSTV 72

Query: 46  ----TVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCII 101
               T G  S +PVY  TP NRELRTPHSGYHFDG+TR+FFEGWYF+VSIPERK+SFC +
Sbjct: 73  ERGGTEGVASASPVYVATPPNRELRTPHSGYHFDGTTRQFFEGWYFKVSIPERKESFCFM 132

Query: 102 YSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGN 161
           YSVENPAF+KKLS LEVAQHGPR TGVG QILGA DKY+C YSEES NFWGSRHELMLGN
Sbjct: 133 YSVENPAFRKKLSPLEVAQHGPRSTGVGAQILGASDKYICQYSEESQNFWGSRHELMLGN 192

Query: 162 TFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYST 221
           TF A+KG QPP+KEVPPQEFNR V EGFQVTPLW+QG I DDGR+++ +TVK+ARWEYST
Sbjct: 193 TFVAEKGMQPPSKEVPPQEFNRMVSEGFQVTPLWNQGFIRDDGRSDYVKTVKTARWEYST 252

Query: 222 RPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSE 281
           RPVYGWGNVGSKQ STAGWLAAFPVFEPHWQICMA GLSTGWIEWDGERFEF+DAPSYSE
Sbjct: 253 RPVYGWGNVGSKQQSTAGWLAAFPVFEPHWQICMAAGLSTGWIEWDGERFEFKDAPSYSE 312

Query: 282 KNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYE 340
           KNWGG FPRKWFW QCN FEGA+GEVALT GGGLRQLP L ++FENAA+IG+HYDGI YE
Sbjct: 313 KNWGGGFPRKWFWAQCNTFEGASGEVALTVGGGLRQLPGLTETFENAALIGVHYDGIFYE 372

Query: 341 FVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCF 400
           FVPW GVV+WEIS WGYW+  AEN+TH+VEL+ATTK PGTTLRAPT+EAGLAPACKDTC+
Sbjct: 373 FVPWKGVVTWEISPWGYWFVTAENETHLVELEATTKDPGTTLRAPTTEAGLAPACKDTCY 432

Query: 401 GELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVD 460
           G L L+LWERRYDG+KGK+ILDVTSDMAA+EVGGGPWFNTWK KT TPELL R L VP+D
Sbjct: 433 GVLKLKLWERRYDGSKGKIILDVTSDMAAVEVGGGPWFNTWKGKTTTPELLSRALRVPLD 492

Query: 461 VDGLFGFVPFFKPPGL 476
           VDG+F F+P FKPPGL
Sbjct: 493 VDGIFNFLPLFKPPGL 508

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551000|ref|XP_002516548.1| Tocopherol cyclase, chloroplast precursor, putative [Ricinus communis] gi|223544368|gb|EEF45889.1| Tocopherol cyclase, chloroplast precursor, putative [Ricinus communis]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/491 (71%), Positives = 404/491 (82%), Gaps = 21/491 (4%)

Query: 7   FSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVL----------------VLASSAQ----T 46
           FS NLGFR   +P ST +P   +  R  N+                    ++SA+     
Sbjct: 15  FSSNLGFRANINPSSTFKPFRCSHFRPLNKAAGAPSSRLSLSNSLTNSDTSTSAERGRMI 74

Query: 47  VGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVEN 106
               SV+P+Y PTP NR+LRTPHSGYHFDG+ R+FFEGWYFRVSIPERKQSFC +Y+VEN
Sbjct: 75  ESASSVSPLYVPTPSNRQLRTPHSGYHFDGTARKFFEGWYFRVSIPERKQSFCFMYAVEN 134

Query: 107 PAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRAD 166
           PAF+ K++ LE+AQHGPR TGV  QILGADDKY+C  SEES NFWGSRHEL+LG+TF  +
Sbjct: 135 PAFRSKMTPLEIAQHGPRSTGVMAQILGADDKYICQCSEESQNFWGSRHELVLGSTFVPE 194

Query: 167 KGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYG 226
           KG QPPTKEVPP+EFN+RV EGFQVTPLWHQG I DDGR+++ ETVK+A WEYSTRP+YG
Sbjct: 195 KGMQPPTKEVPPEEFNKRVSEGFQVTPLWHQGFIRDDGRSDYVETVKTASWEYSTRPIYG 254

Query: 227 WGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGG 286
           WG+V SKQ STAGWLAA PVFEPHWQICMAGGLSTGWIEWDGER+EFQDAPSYSEKNWGG
Sbjct: 255 WGDVESKQKSTAGWLAALPVFEPHWQICMAGGLSTGWIEWDGERYEFQDAPSYSEKNWGG 314

Query: 287 AFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWN 345
            FPRKWFWVQCNVFEGATGE+ALT GGGLRQLP L ++FENAA++G+HYDG  YEFVPWN
Sbjct: 315 GFPRKWFWVQCNVFEGATGEIALTVGGGLRQLPGLTENFENAALVGVHYDGNFYEFVPWN 374

Query: 346 GVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTL 405
           GVV+WE+S WG+W+F AEN+TH+VEL+ATTK PGT L APT+E GLAPAC+DTCF +L L
Sbjct: 375 GVVNWEVSPWGHWFFTAENETHLVELEATTKDPGTPLLAPTAEVGLAPACRDTCFADLKL 434

Query: 406 QLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLF 465
           Q+WERRYDG+KGK+ILDVTSDMAA+EVGGGPWFNTWK KT+TPELL R L VPVD+D + 
Sbjct: 435 QMWERRYDGSKGKLILDVTSDMAAVEVGGGPWFNTWKGKTSTPELLSRALQVPVDMDEIL 494

Query: 466 GFVPFFKPPGL 476
            F+P FKPPGL
Sbjct: 495 SFLPLFKPPGL 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33188419|gb|AAP97931.1| tocopherol cyclase [Eucalyptus gunnii]

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/423 (80%), Positives = 382/423 (90%), Gaps = 1/423 (0%)

Query: 55  VYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLS 114
           VY PTP NRE RTPHSGYH+DGS+R+FFEGWYF+VSIPE +QSFC +YSVENPAF KKLS
Sbjct: 93  VYVPTPPNRESRTPHSGYHWDGSSRKFFEGWYFKVSIPESRQSFCFMYSVENPAFPKKLS 152

Query: 115 SLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTK 174
           +LEVAQ+GPR+TGVG QILGADDKY+C +SEES+NFWGSRHEL+LGNTF A+K ++PP K
Sbjct: 153 ALEVAQYGPRYTGVGAQILGADDKYICQFSEESANFWGSRHELILGNTFMAEKDAKPPNK 212

Query: 175 EVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQ 234
           EVPPQEFN+RV EGFQV+PLWHQG I DDGR+++ ETVK+ARWEYSTRPVYGWGN GS+Q
Sbjct: 213 EVPPQEFNKRVAEGFQVSPLWHQGFIRDDGRSDYVETVKTARWEYSTRPVYGWGNAGSQQ 272

Query: 235 NSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFW 294
            STAGWLAAFPVFEPHWQICMAGGLSTGWIEW+GERFEFQDAPSYSEKNWGGAFPRKWFW
Sbjct: 273 KSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWEGERFEFQDAPSYSEKNWGGAFPRKWFW 332

Query: 295 VQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEIS 353
           VQCNVFEGA GEVALTA GGLRQLP L ++FENAA+IG+HYDGI YEFVPWNGVVSWE++
Sbjct: 333 VQCNVFEGAKGEVALTAAGGLRQLPGLTETFENAALIGVHYDGIFYEFVPWNGVVSWEVA 392

Query: 354 QWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYD 413
            WG WY  A+N+TH V ++ATTK  GTTLRAPT EAGLAPAC DTCFG+L LQ+WERRYD
Sbjct: 393 PWGSWYMEADNETHKVVVEATTKDRGTTLRAPTVEAGLAPACNDTCFGDLKLQIWERRYD 452

Query: 414 GTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKP 473
           G+KGK+ILDVTS+MAA+E+GGGPWF+TWK KT+TPELL R L VPVDVDG FG  PF KP
Sbjct: 453 GSKGKLILDVTSNMAAVEIGGGPWFSTWKGKTSTPELLSRALRVPVDVDGFFGLAPFLKP 512

Query: 474 PGL 476
           PGL
Sbjct: 513 PGL 515

Source: Eucalyptus gunnii

Species: Eucalyptus gunnii

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429977|ref|XP_002281424.1| PREDICTED: tocopherol cyclase, chloroplastic [Vitis vinifera] gi|296081864|emb|CBI20869.3| unnamed protein product [Vitis vinifera]

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/437 (77%), Positives = 385/437 (88%), Gaps = 1/437 (0%)

Query: 41  ASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCI 100
           A S +T    SV+P+Y PTP NRELRTPHSGYHFDGS R+FFEGWYF+VSIPE+KQSFC 
Sbjct: 66  AESGETESLGSVSPIYVPTPSNRELRTPHSGYHFDGSPRQFFEGWYFKVSIPEQKQSFCF 125

Query: 101 IYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLG 160
           +YSVENPAF+KKL + E  Q+GPRFTGVG QILGADDKY+C +SEES+NFWG RHELMLG
Sbjct: 126 MYSVENPAFQKKLGTFEELQYGPRFTGVGAQILGADDKYICQFSEESTNFWGCRHELMLG 185

Query: 161 NTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYS 220
           +TF   K  +PP KEVPP+EFNRRV+EGFQVTPLWHQG I DDGR+N+ +TVK+ARWEYS
Sbjct: 186 HTFVGRKDLRPPNKEVPPEEFNRRVIEGFQVTPLWHQGFIRDDGRSNYVDTVKTARWEYS 245

Query: 221 TRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYS 280
           TRP+YGWGNVGSKQ STAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGER+EF++APSYS
Sbjct: 246 TRPIYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERYEFENAPSYS 305

Query: 281 EKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILY 339
           EKNWGG FPRKWFWVQCN FEGA GEV+LTA GGLR++P L + FENAA++G+HYDGI Y
Sbjct: 306 EKNWGGGFPRKWFWVQCNAFEGADGEVSLTAAGGLRKIPGLTEVFENAALVGVHYDGIFY 365

Query: 340 EFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTC 399
           EFVPWNGVVSWEI+QWGYWY +AEN++HMVEL ATTK PGTTLRAPT+EAGLAPACKD C
Sbjct: 366 EFVPWNGVVSWEINQWGYWYISAENESHMVELVATTKDPGTTLRAPTTEAGLAPACKDNC 425

Query: 400 FGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPV 459
            G L LQ+W+R ++G+KGKMILDVTS+MAA+EVGGGPWFNTWK KTA PEL+R  L VPV
Sbjct: 426 SGALKLQIWKRTFNGSKGKMILDVTSNMAAVEVGGGPWFNTWKGKTAAPELVRLALQVPV 485

Query: 460 DVDGLFGFVPFFKPPGL 476
           D D +FG  PFFKPPGL
Sbjct: 486 DEDAIFGLAPFFKPPGL 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507907|ref|XP_003522704.1| PREDICTED: tocopherol cyclase, chloroplastic-like [Glycine max]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/460 (72%), Positives = 390/460 (84%), Gaps = 1/460 (0%)

Query: 18  HPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGS 77
           H  S+    L+  R   +  + + +  +     SV P Y PT  NR+LRTPHSGYHFDG+
Sbjct: 30  HFPSSSTSTLHLARNSVSDTVPIQNEEKEQTLSSVKPTYSPTLPNRDLRTPHSGYHFDGT 89

Query: 78  TRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADD 137
           TR+FFEGWYF+VSIPER+QSFC +YSVE+P+F+K L+ LE+AQ+GPRFTGVG QILGADD
Sbjct: 90  TRKFFEGWYFKVSIPERRQSFCFMYSVESPSFRKPLTPLELAQYGPRFTGVGAQILGADD 149

Query: 138 KYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 197
           KY+C YS +S  FWGSRHELMLGNTF +++ S+PP KEVPPQEFN RVLEGFQVTPLWHQ
Sbjct: 150 KYICQYSPQSQFFWGSRHELMLGNTFVSNQNSKPPNKEVPPQEFNDRVLEGFQVTPLWHQ 209

Query: 198 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 257
           G I DDGR+N+ ETVK+ARWEYSTRPVYGWG+VGS Q STAGWLAAFPVFEPHWQICMAG
Sbjct: 210 GFIRDDGRSNYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAG 269

Query: 258 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 317
           GLSTGWIEWDGER EF +APSYSEKNWGG FPRKWFWVQCNVFEGA+GE+ALTA GGLRQ
Sbjct: 270 GLSTGWIEWDGERIEFDNAPSYSEKNWGGGFPRKWFWVQCNVFEGASGEIALTAAGGLRQ 329

Query: 318 LP-VLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 376
           +P + ++FENAA+IGIHY G  YEFVPWNGVV+WE++ WGYW+ +A+N  ++VEL+ATT+
Sbjct: 330 IPGITETFENAALIGIHYGGNFYEFVPWNGVVNWEVTTWGYWFMSADNGKYVVELEATTE 389

Query: 377 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 436
            PGTTLRAPT+EAG APACKDTCFG L LQ+WERRYDG+KGK+ILDV+S+MAALEVGGGP
Sbjct: 390 DPGTTLRAPTAEAGFAPACKDTCFGNLKLQMWERRYDGSKGKIILDVSSNMAALEVGGGP 449

Query: 437 WFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 476
           WFNTWK KT+TP  L R L +P+DV+G+F  VP FKPPGL
Sbjct: 450 WFNTWKGKTSTPAALSRVLELPIDVEGIFNPVPLFKPPGL 489

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515597|ref|XP_003526485.1| PREDICTED: tocopherol cyclase, chloroplastic-like [Glycine max]

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/447 (73%), Positives = 387/447 (86%), Gaps = 1/447 (0%)

Query: 31  RRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVS 90
           R  F+  + + +  +     SV P Y PTP NR LRTPHSGYHFDG+TR+FFEGWYF++S
Sbjct: 34  RSFFSDTVPIDNKEKEQLVTSVKPTYSPTPPNRHLRTPHSGYHFDGTTRKFFEGWYFKLS 93

Query: 91  IPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNF 150
           IPER+QSFC +YSVE+P+F+K L+ LEVAQ+G RFTGVG QILGADDKY+C +S ES  F
Sbjct: 94  IPERRQSFCFMYSVESPSFRKPLTPLEVAQYGSRFTGVGAQILGADDKYICQFSPESQFF 153

Query: 151 WGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAE 210
           WGSRHELMLGNTF  ++ S+PP KEVPPQEFN RVLEGFQV+PLWHQG I DDGR+N+ E
Sbjct: 154 WGSRHELMLGNTFVPNQNSKPPNKEVPPQEFNDRVLEGFQVSPLWHQGFIRDDGRSNYVE 213

Query: 211 TVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGER 270
           TVK+ARWEYSTRPVYGWG+VGS Q STAGWLAAFPVFEPHWQICMAGGLSTGWIEWDG+R
Sbjct: 214 TVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGKR 273

Query: 271 FEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLP-VLDSFENAAM 329
            EF +APSYSEKNWGG FPRKWFWVQCNVFEGA+GE+ALTA GGLRQ+P + ++FENAA+
Sbjct: 274 IEFDNAPSYSEKNWGGGFPRKWFWVQCNVFEGASGEIALTAAGGLRQIPGIAETFENAAL 333

Query: 330 IGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEA 389
           IGIHY GI YEFVPWNGVV+WE++ WGYW+ +A+N  ++VE++ATT+ PGTTLRAPT+EA
Sbjct: 334 IGIHYGGIFYEFVPWNGVVNWEVTTWGYWFMSADNGRYVVEIEATTEDPGTTLRAPTAEA 393

Query: 390 GLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPE 449
           GLAPACKDTCFG+L LQ+WERRYDG+KGK+ILDV+S+MAALEVGGGPWFNTWK KT+TP 
Sbjct: 394 GLAPACKDTCFGDLKLQMWERRYDGSKGKIILDVSSNMAALEVGGGPWFNTWKGKTSTPA 453

Query: 450 LLRRTLNVPVDVDGLFGFVPFFKPPGL 476
            L R L +P+DV+G+F  VP FKPPGL
Sbjct: 454 ALSRVLELPIDVEGIFNPVPLFKPPGL 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502842|gb|AFK39487.1| unknown [Medicago truncatula]

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/450 (73%), Positives = 387/450 (86%), Gaps = 1/450 (0%)

Query: 28  YTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYF 87
           +   R F  ++   S  +     S  P+Y PTP NR+LRTPHSGYHFDG+ R+FFEGWYF
Sbjct: 30  FHHNRSFKLIIAHNSHTEQQQSQSSKPIYSPTPPNRQLRTPHSGYHFDGTARKFFEGWYF 89

Query: 88  RVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEES 147
           +VSIPE++QSFC +YSVENPAF+K+LS+LE+AQ+GPRFTGVG QILGADDKY+C Y+ +S
Sbjct: 90  KVSIPEKRQSFCFMYSVENPAFRKELSTLELAQYGPRFTGVGAQILGADDKYICQYTPQS 149

Query: 148 SNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTN 207
            NFWGSR+ELMLGNTF A + S+PP KEVPP+EFN +VLEGFQVTPLW+QG I DDG+++
Sbjct: 150 PNFWGSRNELMLGNTFAAKQNSKPPNKEVPPKEFNDKVLEGFQVTPLWNQGFICDDGKSD 209

Query: 208 FAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWD 267
           + ETVK+ RWEYSTRPVYGWG+VGS Q STAGWLAAFPVFEPHWQICMAGGLSTGWIEWD
Sbjct: 210 YVETVKTTRWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWD 269

Query: 268 GERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFEN 326
           GER EF++APSYSEKNWGGAFPRKWFW QCNVFEGA+GE+ALTA GGLRQ+P L ++FEN
Sbjct: 270 GERIEFENAPSYSEKNWGGAFPRKWFWAQCNVFEGASGEIALTAAGGLRQIPGLTETFEN 329

Query: 327 AAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPT 386
           AA+IGIHY G  YEFVPWNGVVSWE++ WGYW+ +A+N  ++VEL+ATT+ PGTTLRAPT
Sbjct: 330 AALIGIHYGGKFYEFVPWNGVVSWEVATWGYWFMSADNGNYVVELEATTEDPGTTLRAPT 389

Query: 387 SEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA 446
           SEAGL+ ACKDTCFG L L+LWERRYDG+KGK+ILDVTSDMAALEVGGGPWFNTWK KT+
Sbjct: 390 SEAGLSQACKDTCFGILKLKLWERRYDGSKGKIILDVTSDMAALEVGGGPWFNTWKGKTS 449

Query: 447 TPELLRRTLNVPVDVDGLFGFVPFFKPPGL 476
           TP +  R + +PVDVDGL+   P FKPPGL
Sbjct: 450 TPPVFSRAIGLPVDVDGLYNLFPLFKPPGL 479

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|159792908|gb|ABW98674.1| chloroplast tocopherol cyclase [Sesamum indicum]

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/428 (75%), Positives = 376/428 (87%), Gaps = 1/428 (0%)

Query: 50  VSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAF 109
           V V PVY+PTP NR +RTPHSGYHFDG++R+FFEGWYF+VSIPE +QSFC +YSVENPAF
Sbjct: 67  VHVEPVYEPTPPNRPIRTPHSGYHFDGTSRKFFEGWYFKVSIPECRQSFCFMYSVENPAF 126

Query: 110 KKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGS 169
           +KKLS+LE  Q+GPRFTGVG QILGADDKY+C Y+EES NFWG+R EL LGNTF A +  
Sbjct: 127 RKKLSTLEEVQYGPRFTGVGAQILGADDKYICQYTEESQNFWGNRDELTLGNTFVAQEKM 186

Query: 170 QPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGN 229
           QPP KE+PPQEFNRRV+EGFQVTPLWHQG I DDGRTN+ E VK+ARW YSTRPVYGWGN
Sbjct: 187 QPPKKEIPPQEFNRRVVEGFQVTPLWHQGFIRDDGRTNYTEIVKTARWAYSTRPVYGWGN 246

Query: 230 VGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFP 289
           VGSKQ STAGWLAAFPVFEPHWQICMAGGLSTGWIEWD + +EF++APSYSEKNWG  FP
Sbjct: 247 VGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDDKLYEFKNAPSYSEKNWGAGFP 306

Query: 290 RKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVV 348
           RKWFWVQCNVFEGA GEVALTA GGLRQ+P L ++FENAA+ G+HYDG  YEFVPWNGVV
Sbjct: 307 RKWFWVQCNVFEGADGEVALTAAGGLRQVPGLSETFENAALFGVHYDGAFYEFVPWNGVV 366

Query: 349 SWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLW 408
           +WEI+ WG+W  +AEN+ + VEL+ATTK PGTTLRAPT+EAGLAP CKDTCF +L L+LW
Sbjct: 367 NWEIAPWGHWSISAENEMYTVELEATTKDPGTTLRAPTTEAGLAPVCKDTCFADLRLRLW 426

Query: 409 ERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFV 468
           ERRYDG++GK+ILDVTS+MAA+EVGGGPWF TWK KT TPE+++R + +PVDV+G+FG  
Sbjct: 427 ERRYDGSEGKVILDVTSNMAAVEVGGGPWFTTWKGKTQTPEIIKRVVGLPVDVEGMFGLA 486

Query: 469 PFFKPPGL 476
           PF +PPGL
Sbjct: 487 PFLRPPGL 494

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657553|gb|AFB74210.1| tocopherol cyclase [Brassica napus]

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/430 (76%), Positives = 377/430 (87%), Gaps = 2/430 (0%)

Query: 49  GVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPA 108
            +SV PVY PTP NRELRTPHSGYHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPA
Sbjct: 61  AISVKPVYVPTPPNRELRTPHSGYHFDGTARKFFEGWYFRVSIPEKRESFCFMYSVENPA 120

Query: 109 FKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKG 168
           F+K+LS LEV  +GPRFTGVG QILGA+DKY+C Y+E+S NFWG RHEL+LGNTF A  G
Sbjct: 121 FRKRLSPLEVGLYGPRFTGVGAQILGANDKYLCQYTEDSHNFWGDRHELVLGNTFSAMPG 180

Query: 169 SQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWG 228
           ++ P KEVPP+EFNRRV EGFQ TP WHQG I DDGRT++AETVKSARWEYSTRPVYGWG
Sbjct: 181 ARSPDKEVPPEEFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARWEYSTRPVYGWG 240

Query: 229 NVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAF 288
           +VG+KQ STAGW AAFPVFEPHWQICMAGGLSTGWIEW  ERFEF+DAPSYSEKNWGG F
Sbjct: 241 DVGTKQKSTAGWPAAFPVFEPHWQICMAGGLSTGWIEWGDERFEFRDAPSYSEKNWGGGF 300

Query: 289 PRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGV 347
           PRKWFWVQCNVFEGA GE+ALTA GGLRQLP L ++FENAA++ +HYDG LYEFVPWNGV
Sbjct: 301 PRKWFWVQCNVFEGAKGEIALTAAGGLRQLPGLTETFENAALVCVHYDGKLYEFVPWNGV 360

Query: 348 VSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQL 407
           VSWE+S WGYWY  AEN+THMVEL+A T   GT LRAPTSEAGLA ACKD+C+GEL LQ+
Sbjct: 361 VSWEMSPWGYWYMTAENETHMVELEARTNEAGTPLRAPTSEAGLATACKDSCYGELKLQI 420

Query: 408 WERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTLNVPVDVDGLFG 466
           WERRYDG+KGK+I++  S MAA+E+GGGPWF TWK  T+ TPELL+R+L VP+D++ +FG
Sbjct: 421 WERRYDGSKGKVIMEAKSSMAAVEIGGGPWFGTWKGDTSNTPELLKRSLQVPLDLESVFG 480

Query: 467 FVPFFKPPGL 476
           +VPFFKPPGL
Sbjct: 481 WVPFFKPPGL 490

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283109|dbj|BAJ34420.1| unnamed protein product [Thellungiella halophila]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/437 (75%), Positives = 383/437 (87%), Gaps = 2/437 (0%)

Query: 42  SSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCII 101
           SS+     +SV PVY PTP NR+LRTPHSGYHFDG+ R+FFEGWYFRVSIPE+K+SFC +
Sbjct: 58  SSSGKDAAISVKPVYVPTPPNRDLRTPHSGYHFDGTARKFFEGWYFRVSIPEKKESFCFM 117

Query: 102 YSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGN 161
           YSVENPAF+K+LS LEVA +GPRFTGVG QILGA+DKY+C Y++ES NFWG RHEL+LGN
Sbjct: 118 YSVENPAFRKRLSPLEVALYGPRFTGVGAQILGANDKYICQYTQESHNFWGDRHELVLGN 177

Query: 162 TFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYST 221
           TF A  G++ P+KEVPP+EFNRRV EGFQVTP WHQG I DDGRT++AETVKSARWEYST
Sbjct: 178 TFSAVPGARSPSKEVPPEEFNRRVSEGFQVTPFWHQGHICDDGRTDYAETVKSARWEYST 237

Query: 222 RPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSE 281
           RPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAGGLSTGWIEW GERFEF+DAPSYSE
Sbjct: 238 RPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAPSYSE 297

Query: 282 KNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYE 340
           KNWGG FPRKWFWVQCNVFEGA+GEVALTA GGLRQLP L +++ENAA++ +H+DG LYE
Sbjct: 298 KNWGGGFPRKWFWVQCNVFEGASGEVALTAAGGLRQLPGLTETYENAALVCVHFDGKLYE 357

Query: 341 FVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCF 400
           FVPWNGVV W++S WGYWY  AEN+THMVEL+A T   GT LRAPT+EAGLA AC+D+C+
Sbjct: 358 FVPWNGVVRWDMSPWGYWYMTAENETHMVELEARTNEAGTPLRAPTTEAGLATACRDSCY 417

Query: 401 GELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTLNVPV 459
           GEL LQ+WER YDG+KGK+IL+  S MAA+E+GGGPWF TWK  T+ TPELL+R+L VP+
Sbjct: 418 GELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKRSLQVPL 477

Query: 460 DVDGLFGFVPFFKPPGL 476
           D++ +FG+VPFFKPPGL
Sbjct: 478 DLETVFGWVPFFKPPGL 494

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
TAIR|locus:2125657	488	VTE1 "VITAMIN E DEFICIENT 1" [	0.972	0.948	0.705	6.7e-191
UNIPROTKB|Q6K7V6	470	VTE1 "Probable tocopherol cycl	0.964	0.976	0.665	1.5e-179

TAIR|locus:2125657 VTE1 "VITAMIN E DEFICIENT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1850 (656.3 bits), Expect = 6.7e-191, P = 6.7e-191
 Identities = 330/468 (70%), Positives = 384/468 (82%)

Query:    14 RTVEHPDSTLRPLLYTKR--RHFNRVLVLASSAQT-VGGVSVNPVYKPTPRNRELRTPHS 70
             R V     +L P   TK   R  +RV    S+  +    +SV PVY PT  NRELRTPHS
Sbjct:    21 RPVSPLTRSLVPFRSTKLVPRSISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHS 80

Query:    71 GYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGV 130
             GYHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPAF++ LS LEVA +GPRFTGVG 
Sbjct:    81 GYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGA 140

Query:   131 QILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQ 190
             QILGA+DKY+C Y ++S NFWG RHEL+LGNTF A  G++ P KEVPP+EFNRRV EGFQ
Sbjct:   141 QILGANDKYLCQYEQDSHNFWGDRHELVLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQ 200

Query:   191 VTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPH 250
              TP WHQG I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ STAGW AAFPVFEPH
Sbjct:   201 ATPFWHQGHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPH 260

Query:   251 WQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALT 310
             WQICMAGGLSTGWIEW GERFEF+DAPSYSEKNWGG FPRKWFWVQCNVFEGATGEVALT
Sbjct:   261 WQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEVALT 320

Query:   311 AGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMV 369
             AGGGLRQLP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S WGYWY  AEN+ H+V
Sbjct:   321 AGGGLRQLPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPWGYWYITAENENHVV 380

Query:   370 ELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAA 429
             EL+A T   GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+KGK+IL+  S MAA
Sbjct:   381 ELEARTNEAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAA 440

Query:   430 LEVGGGPWFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPPGL 476
             +E+GGGPWF TWK  T+ TPELL++ L VP+D++   G VPFFKPPGL
Sbjct:   441 VEIGGGPWFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPPGL 488

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0009706 "chloroplast inner membrane" evidence=TAS

GO:0009976 "tocopherol cyclase activity" evidence=IMP;IDA

GO:0010189 "vitamin E biosynthetic process" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009644 "response to high light intensity" evidence=IEP

GO:0006631 "fatty acid metabolic process" evidence=IGI

GO:0015994 "chlorophyll metabolic process" evidence=IGI

GO:0016122 "xanthophyll metabolic process" evidence=IMP

GO:0010287 "plastoglobule" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

UNIPROTKB|Q6K7V6 VTE1 "Probable tocopherol cyclase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1743 (618.6 bits), Expect = 1.5e-179, P = 1.5e-179
 Identities = 308/463 (66%), Positives = 365/463 (78%)

Query:    16 VEHPDSTLRPLLYTKRRHFNRVLV--LASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYH 73
             V  P     P     RRH  R L    ASS+ +       PVY PTPR+R LRTPHSGYH
Sbjct:    10 VSFPRPAPPPRRCAPRRH-RRALAPRAASSSPSPSTAVAAPVYAPTPRDRALRTPHSGYH 68

Query:    74 FDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQIL 133
             +DG+ R FFEGWYF+VSIPE +QSFC +YSVENP F+  +S L+   HG RFTGVG QIL
Sbjct:    69 YDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDRVIHGSRFTGVGAQIL 128

Query:   134 GADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTP 193
             GADDKY+C ++E+S+NFWGSRHELMLGNTF  + GS PP  EVPPQEF+ RVLEGFQVTP
Sbjct:   129 GADDKYICQFTEKSNNFWGSRHELMLGNTFIPNNGSTPPEGEVPPQEFSSRVLEGFQVTP 188

Query:   194 LWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQI 253
             +WHQG I DDGR+ +   V++ARWEYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQI
Sbjct:   189 IWHQGFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQI 248

Query:   254 CMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGG 313
             CMAGGLSTGWIEWDGERFEF++APSYSEKNWG  FPRKW+WVQCNVF GA+GEVALTA G
Sbjct:   249 CMAGGLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAG 308

Query:   314 GLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKA 373
             GLR++ + +++E+ ++IGIHY+G  YEFVPW G VSW+I+ WG+W  + EN+ H+VE++A
Sbjct:   309 GLRKIGLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEA 368

Query:   374 TTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVG 433
             TTK PGT LRAPT EAGL PACKDTC+G+L LQ+WE+R DG KGKMILD TS+MAALEVG
Sbjct:   369 TTKEPGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGKGKMILDATSNMAALEVG 428

Query:   434 GGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 476
             GGPWFN WK  T + E++   +   VDV+ LF  +PF KPPGL
Sbjct:   429 GGPWFNGWKGTTVSNEIVNNVVGTQVDVESLFP-IPFLKPPGL 470


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      476       476   0.00078  119 3  11 22  0.39    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  632 (67 KB)
  Total size of DFA:  355 KB (2174 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.10u 0.09s 37.19t   Elapsed:  00:00:04
  Total cpu time:  37.10u 0.09s 37.19t   Elapsed:  00:00:04
  Start:  Mon May 20 16:53:25 2013   End:  Mon May 20 16:53:29 2013

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94FY7	TOCC_ARATH	No assigned EC number	0.7051	0.9726	0.9487	yes	no
Q6K7V6	TOCC_ORYSJ	No assigned EC number	0.7021	0.8865	0.8978	yes	no
Q94FY8	TOCC_MAIZE	No assigned EC number	0.6578	0.9453	0.9493	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	476
PLN02818	403	PLN02818, PLN02818, tocopherol cyclase	0.0
pfam14249	331	pfam14249, Tocopherol_cycl, Tocopherol cyclase	0.0

>gnl|CDD|215438 PLN02818, PLN02818, tocopherol cyclase

 Score =  706 bits (1823), Expect = 0.0
 Identities = 281/404 (69%), Positives = 330/404 (81%), Gaps = 3/404 (0%)

Query: 64  ELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGP 123
            LRTPHSGYHFDG+ RRFFEGWYF+VS+PE KQSF  +YS+E+PAF++++S LE   HG 
Sbjct: 1   ALRTPHSGYHFDGTPRRFFEGWYFKVSLPEVKQSFAFMYSIEDPAFRERMSGLEELLHGS 60

Query: 124 RFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNR 183
           RFTGVG QILG DDKY+C ++E+S+ FWGSRHEL LGNTF    GS PP  EVPP EF R
Sbjct: 61  RFTGVGAQILGPDDKYLCQFTEDSTKFWGSRHELALGNTFAPKNGSTPPRSEVPPDEFYR 120

Query: 184 RVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAA 243
           RV EGFQVTP WHQG + DDGR+ +A+TVK+ARWEYSTRPVYGWG+VGSKQ STAGWLAA
Sbjct: 121 RVEEGFQVTPFWHQGRLRDDGRSPYAKTVKTARWEYSTRPVYGWGDVGSKQKSTAGWLAA 180

Query: 244 FPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGA 303
            PVFEPHWQICMA GL+TGWIEW GER+EF+DAPSYSEKNWGG FP KWFWVQCNVF+GA
Sbjct: 181 LPVFEPHWQICMAHGLATGWIEWGGERYEFEDAPSYSEKNWGGGFPSKWFWVQCNVFDGA 240

Query: 304 TGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAA 362
           +G ++LTAGGGLR LP+L   FE  A+IG+HYDG  YEFVPWNG V W++S WG W   A
Sbjct: 241 SG-LSLTAGGGLRGLPLLPGVFEEVALIGVHYDGKFYEFVPWNGEVEWDVSPWGRWKLRA 299

Query: 363 ENQTHMVELKATT-KYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMIL 421
           EN+TH VEL+ATT K PGT LRAPT++ GLAP C+DT  G+L LQLWER +DG+KGK+IL
Sbjct: 300 ENETHEVELEATTAKEPGTVLRAPTTDVGLAPFCRDTFAGKLKLQLWERSWDGSKGKLIL 359

Query: 422 DVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLF 465
           D TS MAA+EVGGGPW++TWK      E L+  L +PVDV+ +F
Sbjct: 360 DATSSMAAVEVGGGPWWSTWKGTARMKEPLKSLLGLPVDVESIF 403

Length = 403

>gnl|CDD|222624 pfam14249, Tocopherol_cycl, Tocopherol cyclase

 Score =  554 bits (1429), Expect = 0.0
 Identities = 201/357 (56%), Positives = 248/357 (69%), Gaps = 26/357 (7%)

Query: 78  TRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADD 137
           +RRFFEGWYFRV++PE +QSF  +YS+E+P              G   +G   QILG +D
Sbjct: 1   SRRFFEGWYFRVTLPEIRQSFAFMYSIEDPI------------GGQPHSGGAAQILGPED 48

Query: 138 KYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 197
           KY+C    +   FW SRH+L LG+  +     + P + +PPQEF RRV EG+Q T  W+Q
Sbjct: 49  KYLCRTFPDVKKFWASRHQLALGHWGK--TNLKLPPQYLPPQEFERRVQEGYQATATWNQ 106

Query: 198 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 257
           G I D G      T ++ RWEYS RPVYGWG+VG  Q STAGWL+  P+FEP WQI MA 
Sbjct: 107 GFIRDPG------TGETCRWEYSIRPVYGWGDVGRPQQSTAGWLSYLPIFEPGWQILMAH 160

Query: 258 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 317
           GL+TGWIEW+G+R+EF++AP+YSEKNWGGAFPRKWFW+ CN FEG   ++ALTA GG RQ
Sbjct: 161 GLATGWIEWNGKRYEFENAPAYSEKNWGGAFPRKWFWINCNSFEGE-PDLALTAAGGRRQ 219

Query: 318 LPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKY 377
           +      E+ A+IGIHY G  YEFVPWN  V+W+I+ WGYW+  AEN+ H VEL+ TT  
Sbjct: 220 VLWW--MESVALIGIHYQGKFYEFVPWNSQVTWQITPWGYWHMQAENERHEVELEGTTDE 277

Query: 378 PGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGG 434
           PGT LRAPT E GL   C+DT  GEL LQLWER  DG+KGK+IL  TSD+A LEVGG
Sbjct: 278 PGTPLRAPTEE-GLQFLCRDTMKGELKLQLWER--DGSKGKVILKATSDLAGLEVGG 331

This family contains tocopherol cyclases. These enzymes are involved in the synthesis of tocopherols and tocotrienols (vitamin E). Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	476
PLN02818	403	tocopherol cyclase	100.0
PF14249	336	Tocopherol_cycl: Tocopherol cyclase	100.0
PF07143	312	CrtC: Hydroxyneurosporene synthase (CrtC); InterPr	97.88
PF10974	333	DUF2804: Protein of unknown function (DUF2804); In	93.96
COG5621	354	Predicted secreted hydrolase [General function pre	86.11

>PLN02818 tocopherol cyclase

Probab=100.00  E-value=2.4e-130  Score=1003.74  Aligned_cols=401  Identities=70%  Similarity=1.347  Sum_probs=392.1

Q ss_pred             CccCCCcccccCCCCCCceeeEEEEEecCCCCeEEEEEEEeecCCcccccchhhhhccCCccccceEEEEccCCeEEEEc
Q 011852           64 ELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHY  143 (476)
Q Consensus        64 ~~~tPhsgyhg~g~~~~fFEGWYfKv~~p~~~~sfA~I~sI~~p~g~~~~~af~~~~~~~~~~g~~iQVl~~~~~y~~~y  143 (476)
                      +++||||||||||++|||||||||||++|+.+|||||||||+||.+++++++++++++|++++|+++|||+++|+|+||+
T Consensus         1 ~~~tPHsGyh~dg~~rrFfEGWy~rvtlpe~~qsf~fmysiedp~~~~~~~~~~~~~~~~~~~g~~aQilg~~d~y~~~~   80 (403)
T PLN02818          1 ALRTPHSGYHFDGTPRRFFEGWYFKVSLPEVKQSFAFMYSIEDPAFRERMSGLEELLHGSRFTGVGAQILGPDDKYLCQF   80 (403)
T ss_pred             CCcCCCCCcccCCCCcCcccceEEEEEcCCCCceEEEEEEeeCCccccccccchhhcCCCCCCCceeeeecCCCceEEEe
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccCCceEEeCceeecCCCCCCCCCCCCchhhhcccccceeccceeeeeeEecCCCCcccccccccceeeeccc
Q 011852          144 SEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRP  223 (476)
Q Consensus       144 ~~~~~~F~~~~~~l~IG~~~~s~~~~~~~~~~l~~~~f~~~v~~g~q~~~~~~qG~l~~~~~~~~~~~~~~~~W~~~i~p  223 (476)
                      ++|+.+||+++++|.|||++..+.....++++|+|+||+++|+||||+|+++|||.|+|+++++|.++++++||+|+|+|
T Consensus        81 ~~~~~~Fw~~~~~l~lg~~~~~~~~~~~~~~~~~p~~f~~~v~~G~q~t~~~~qG~i~d~~~~~~~~~~~~~rw~y~~~p  160 (403)
T PLN02818         81 TEDSTKFWGSRHELALGNTFAPKNGSTPPRSEVPPDEFYRRVEEGFQVTPFWHQGRLRDDGRSPYAKTVKTARWEYSTRP  160 (403)
T ss_pred             CCCcccccccchhcccccccccccCCCCCcccCChHHHHHhhhcceeeccceecceecCCCCCccccccceEEEEEEeee
Confidence            99999999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcccccccccCCCcceEEEecCccEEEEEEECCEEEEEcCCcccccCCCCCCCCCCcEEEEeccCCCC
Q 011852          224 VYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGA  303 (476)
Q Consensus       224 ~~gwG~~~~~~~~~mGpf~~LP~mEphw~V~m~h~lasG~I~~nG~~~dF~~g~GYiEKNWG~sFP~~w~W~Qcn~Fd~~  303 (476)
                      +||||+++++|++|||||++||+|||||||+|+|++++|+|+|||++|+|++++||+|||||+|||++|+|+|||+|+++
T Consensus       161 ~~gwG~~~~~~~stmGwfs~lP~fEp~wqVlmahg~asG~I~wnG~~yeF~~apgY~EKNWG~sFP~kWfWiQCN~F~~~  240 (403)
T PLN02818        161 VYGWGDVGSKQKSTAGWLAALPVFEPHWQICMAHGLATGWIEWGGERYEFEDAPSYSEKNWGGGFPSKWFWVQCNVFDGA  240 (403)
T ss_pred             eeecCCCCCCCCCccchhhhcccccCcceeeecCcEEEEEEEECCEEEEecCCCeeeEccCCCCCCcCeeeEecccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEEcccccccCcc-ccccceEEEEEEECCEEEEEecCCcceEEEEeeeeeEEEEEEeCcEEEEEEEEe-cCCCce
Q 011852          304 TGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATT-KYPGTT  381 (476)
Q Consensus       304 ~~~~sLt~AGg~~~IP~l-~~f~~~~lIgl~~~Gk~yrFaty~gs~~~~v~~~g~w~i~~~~~~~~Lei~~~~-~~~g~~  381 (476)
                      ++ +||+|+||+|+||++ .+|++++||+||++|++|||+||+|++.|+|++|++|+|+++|++|+|+|+++| +.+++.
T Consensus       241 ~~-LalTagGg~r~IP~l~~~fe~v~ligvh~~GkfYrFap~~g~v~w~v~pwg~W~i~a~n~~~~veIe~~~~~~~g~~  319 (403)
T PLN02818        241 SG-LSLTAGGGLRGLPLLPGVFEEVALIGVHYDGKFYEFVPWNGEVEWDVSPWGRWKLRAENETHEVELEATTAKEPGTV  319 (403)
T ss_pred             Cc-EEEEecCCcccCccccccccceEEEEEEECCEEEEEEeecceEEEEEccCCcEEEEEECCCEEEEEEEEEcCCCCce
Confidence            98 999999999999998 899999999999999999999999999999999999999999999999999999 668899


Q ss_pred             EeCCCCCCCcccceeecccEEEEEEEEeccccCCCCeEEEEEeeceeEEeeeCCcccccccccccchHHHhhhcccceec
Q 011852          382 LRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDV  461 (476)
Q Consensus       382 L~AP~~g~~m~~~c~ES~~g~i~v~L~~k~~~~~~g~lI~d~~s~~AglEiGG~pw~~~w~~~~~~~~~~~~~~~~~~~~  461 (476)
                      |+||+.+++|++.|+||+.|+++|+||++.+++.++++|+|++|++||||+||+||+++|+++++|+|||++||++||||
T Consensus       320 LrAPt~~~gM~~~crESl~G~l~l~L~~~~~~~~~gk~I~d~~S~~AGLEvGGgpW~~~W~~~~~~~~~~~~~~~~p~d~  399 (403)
T PLN02818        320 LRAPTTDVGLAPFCRDTFAGKLKLQLWERSWDGSKGKLILDATSSMAAVEVGGGPWWSTWKGTARMKEPLKSLLGLPVDV  399 (403)
T ss_pred             EECCCCCCCCCchhhhcCCceEEEEEEecccCCCCCcEEEEeccCceeEEecCCcCcccccccccchhhHHHHhCCccch
Confidence            99999886799999999999999999998777888899999999999999999999999999999999999999999999


Q ss_pred             cccc
Q 011852          462 DGLF  465 (476)
Q Consensus       462 ~~~~  465 (476)
                      |+|+
T Consensus       400 ~~~~  403 (403)
T PLN02818        400 ESIF  403 (403)
T ss_pred             hhcC
Confidence            9985

>PF14249 Tocopherol_cycl: Tocopherol cyclase

Probab=100.00  E-value=9.2e-100  Score=771.96  Aligned_cols=333  Identities=53%  Similarity=1.100  Sum_probs=315.2

Q ss_pred             CCCceeeEEEEEecCCCCeEEEEEEEeecCCcccccchhhhhccCCccccceEEEEccCCeEEEEcCccccccccCCceE
Q 011852           78 TRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHEL  157 (476)
Q Consensus        78 ~~~fFEGWYfKv~~p~~~~sfA~I~sI~~p~g~~~~~af~~~~~~~~~~g~~iQVl~~~~~y~~~y~~~~~~F~~~~~~l  157 (476)
                      +|||||||||||++|+.+|||||||||+||.++++            ++|+++|||+++|+|+||+++++.+||++++++
T Consensus         1 ~~~ffEGWy~rvtlp~~~~sf~~mysi~dp~~~~~------------~~g~~aqilg~~d~y~~~~~~~~~~fw~~~~~~   68 (336)
T PF14249_consen    1 SRRFFEGWYFRVTLPEIGQSFAFMYSIEDPIGGQP------------YSGGAAQILGPDDKYLCRTFPDVQKFWASRHEL   68 (336)
T ss_pred             CCccccceEEEEEcCCCCcEEEEEEEEEcCCCCCC------------cCCceeEEecCCCeEEEEECCCCCceEEecccc
Confidence            58999999999999999999999999999999777            899999999999999999999999999999999


Q ss_pred             EeCceeecC---CCCCCCCCCCCchhhhcccccceeccceeeeeeEecCCCCcccccccccceeeecccccccCCCCCCC
Q 011852          158 MLGNTFRAD---KGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQ  234 (476)
Q Consensus       158 ~IG~~~~s~---~~~~~~~~~l~~~~f~~~v~~g~q~~~~~~qG~l~~~~~~~~~~~~~~~~W~~~i~p~~gwG~~~~~~  234 (476)
                      .||+.+...   +.+..++++|+|++|+++|+||||+|+++|||.|.|+++.++|      +|+|+|+|+++||+++++|
T Consensus        69 ~lg~~~~~~~~~~~~~~~~~~~~p~~f~~~v~~g~q~t~~~~qg~~~~~~~~~~~------~w~y~i~p~~~wg~~~~~~  142 (336)
T PF14249_consen   69 ALGNLFLGHWGKTDLKPPPGYLPPQEFERRVQEGYQVTATWNQGIIRDPGTGKTC------RWDYSIKPIYGWGNSGRLQ  142 (336)
T ss_pred             ccCceeeeecccCCCCCCccccChHHhHhhhhccceeccccccCCccCCCCccEE------EEEEEEcccccCCCccccC
Confidence            999888887   5666689999999999999999999999999999998876655      8999999999999999999


Q ss_pred             CCcccccccccCCCcceEEEecCccEEEEEEECCEEEEEcCCcccccCCCCCCCCCCcEEEEeccCCCCCcceEEEEccc
Q 011852          235 NSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGG  314 (476)
Q Consensus       235 ~~~mGpf~~LP~mEphw~V~m~h~lasG~I~~nG~~~dF~~g~GYiEKNWG~sFP~~w~W~Qcn~Fd~~~~~~sLt~AGg  314 (476)
                      ++|||||++||+|||||||+|+|++++|+|+|||++|+|++|+||+|||||++||++|+|+|||+|+++++ ++|+++||
T Consensus       143 ~~~mGwfs~lP~~Ec~w~V~~~~g~asG~i~~nG~~~~F~~g~gY~EKNWG~sFP~~W~W~QcN~F~~~~~-~slt~sgg  221 (336)
T PF14249_consen  143 KSIMGWFSFLPFFECYWQVLMAHGLASGWIEWNGKRYDFTGGPGYIEKNWGGSFPSKWFWIQCNSFDGEPD-VSLTASGG  221 (336)
T ss_pred             CCccchHhhccccCCCchheecCcEEEEEEEECCEEEEECCCceeeccccCcCCCCCcEEEEccccCCCCC-eEEEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999998875 99999999


Q ss_pred             ccccCccccccceEEEEEEECCEEEEEecCCcceEEEEeeeeeEEEEEEeCcEEEEEEEEecCCCceEeCCCCCCCcccc
Q 011852          315 LRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPA  394 (476)
Q Consensus       315 ~~~IP~l~~f~~~~lIgl~~~Gk~yrFaty~gs~~~~v~~~g~w~i~~~~~~~~Lei~~~~~~~g~~L~AP~~g~~m~~~  394 (476)
                      +++||++  .+.++|||||++|++|||+||++.+.|+|++|++|+|+++|++|+|+|+++++.+++.|+||+.+ +|++.
T Consensus       222 ~~~i~~~--~e~~~ligi~~~Gk~YrF~p~n~~v~~~V~~~g~w~i~~~n~~~~lei~~~~~~~g~~L~AP~~~-~m~~~  298 (336)
T PF14249_consen  222 RRPIPGL--TESVGLIGIHYDGKFYRFAPYNSKVSWQVDPWGRWRIRARNRKYELEIEATTDSPGTPLRAPTEG-GMQPR  298 (336)
T ss_pred             ccccCcc--ccccEEEEEEECCEEEEEEcccceEEEEEeeCceEEEEEECCCEEEEEEEEECCCCcEEeCcCCC-CCchh
Confidence            9999876  34589999999999999999999999999999999999999999999999998778999999988 89999


Q ss_pred             eeecccEEEEEEEEeccccCCCCeEEEEEeeceeEEeeeC
Q 011852          395 CKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGG  434 (476)
Q Consensus       395 c~ES~~g~i~v~L~~k~~~~~~g~lI~d~~s~~AglEiGG  434 (476)
                      |+||+.|+++|+|++++  ++++++|++++|++||||+||
T Consensus       299 ~rEsl~g~v~v~L~~~~--~~~g~lI~~~~s~~AGLEvGG  336 (336)
T PF14249_consen  299 CRESLQGRVRVELWEKK--GKKGKLIFDGTSNLAGLEVGG  336 (336)
T ss_pred             hhccCcEEEEEEEEECc--CCCCcEEEEeecCcEEEeecC
Confidence            99999999999999954  455899999999999999997

>PF07143 CrtC: Hydroxyneurosporene synthase (CrtC); InterPro: IPR010791 This family consists of several purple photosynthetic bacterial hydroxyneurosporene synthase (CrtC) proteins

Probab=97.88  E-value=0.0012  Score=66.88  Aligned_cols=55  Identities=20%  Similarity=0.438  Sum_probs=41.7

Q ss_pred             ecCccEEEEEEECCEEEEEcCCcccccCCCCCCC--CC--CcEEEEeccCCCCCcceEEEEc
Q 011852          255 MAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAF--PR--KWFWVQCNVFEGATGEVALTAG  312 (476)
Q Consensus       255 m~h~lasG~I~~nG~~~dF~~g~GYiEKNWG~sF--P~--~w~W~Qcn~Fd~~~~~~sLt~A  312 (476)
                      +.+..++|+|+++|+.+.++ |.||.+||||+..  +.  .|-|.+...-++.  ++|+...
T Consensus       146 ~P~~~v~Gtl~i~g~~~~V~-G~aw~Dh~WG~~~l~~~~~gW~W~~l~l~dg~--~l~~y~~  204 (312)
T PF07143_consen  146 APRLRVSGTLTIDGKTIQVT-GTAWFDHQWGSFPLAPGQSGWDWFRLQLDDGR--ELMLYQL  204 (312)
T ss_dssp             EEEEEEEEEEEETTEEEEEE-EEEEEEEEEESS-S-TTEEEEEEEEEEETTS---EEEEEEE
T ss_pred             cccEEEEEEEEECCEEEEEe-eeEEEEEcccCccCccCCCccEEEEEECCCCC--EEEEEEE
Confidence            66667899999999999999 8999999999854  23  4999999644433  2555444

The enzyme catalyses the conversion of various acyclic carotenes including 1-hydroxy derivatives. This broad substrate specificity reflects the participation of CrtC in 1'-HO-spheroidene and in spirilloxanthin biosynthesis [].; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0016117 carotenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2ICH_B.

>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function

Probab=93.96  E-value=0.53  Score=48.85  Aligned_cols=104  Identities=15%  Similarity=0.380  Sum_probs=73.2

Q ss_pred             EEEEEEECCEEEEEcCCcccccCCCCCC---CCCCcEEEEeccCCC-CCcceEEEEcccccccCccccccceEEEEEEEC
Q 011852          260 STGWIEWDGERFEFQDAPSYSEKNWGGA---FPRKWFWVQCNVFEG-ATGEVALTAGGGLRQLPVLDSFENAAMIGIHYD  335 (476)
Q Consensus       260 asG~I~~nG~~~dF~~g~GYiEKNWG~s---FP~~w~W~Qcn~Fd~-~~~~~sLt~AGg~~~IP~l~~f~~~~lIgl~~~  335 (476)
                      ++|+|.++|++++|+...++.=-|||+.   +-..|-|.-+++..+ .. .+.|-++.|... +-     +..=-+|.++
T Consensus       173 v~G~v~~g~~~~~~~~~~~~a~lD~~rG~~~~~t~W~Was~sg~~~dG~-~iG~NL~~g~~d-~t-----~~tEN~l~~d  245 (333)
T PF10974_consen  173 VSGSVRLGGKEYSFDPENAFAVLDWGRGYWPRETFWNWASASGRLDDGR-RIGFNLGAGFND-GT-----GATENALWVD  245 (333)
T ss_pred             eEEEEEECCEEEecCCCCcEEEEEcCCCccCCcCeEEEEEEEEECCCCC-EEEEEeeccccc-CC-----CCcceEEEEC
Confidence            6999999999999997677777788875   456899999998864 32 377777765544 11     2344568899


Q ss_pred             CEEEEEecCCcceEEEEee---eeeEEEEEEeCcEEEEEEEE
Q 011852          336 GILYEFVPWNGVVSWEISQ---WGYWYFAAENQTHMVELKAT  374 (476)
Q Consensus       336 Gk~yrFaty~gs~~~~v~~---~g~w~i~~~~~~~~Lei~~~  374 (476)
                      |+.+.+.    .+.++++.   -..|+|+-.++...|+.+-.
T Consensus       246 G~~~kL~----~V~f~~~~~~~~~pW~i~s~dg~vdL~FtP~  283 (333)
T PF10974_consen  246 GKLHKLP----PVRFEYDREDPMKPWRITSDDGRVDLTFTPI  283 (333)
T ss_pred             CEEEECC----cEEEEecCcCCCCCeEEEcCCCeEEEEEEEe
Confidence            9998883    34555553   24798888766665555533

>COG5621 Predicted secreted hydrolase [General function prediction only]

Probab=86.11  E-value=48  Score=34.78  Aligned_cols=204  Identities=18%  Similarity=0.288  Sum_probs=102.6

Q ss_pred             ccCceecCCCCCCCccCCC-cccccCCCCCCc-eeeEEEEEecCC-CCeEEEEEEEee----cCCcccccchhhh-hccC
Q 011852           51 SVNPVYKPTPRNRELRTPH-SGYHFDGSTRRF-FEGWYFRVSIPE-RKQSFCIIYSVE----NPAFKKKLSSLEV-AQHG  122 (476)
Q Consensus        51 ~~~~~~~~~~~~~~~~tPh-sgyhg~g~~~~f-FEGWYfKv~~p~-~~~sfA~I~sI~----~p~g~~~~~af~~-~~~~  122 (476)
                      .+.+..-|+-+ ..++-|. -|=|     ..| -|=||+-.++++ .++-+++-.+.+    +|.. ..  +..- -+| 
T Consensus        34 ~~~g~s~pt~~-~~~~fp~D~gph-----pdf~~EWWyltanLeta~g~~lgvqwt~fR~Al~p~d-~~--gW~~pqv~-  103 (354)
T COG5621          34 NAAGFSIPTRP-VAVRFPRDLGPH-----PDFQTEWWYLTANLETADGQLLGVQWTFFRSALAPAD-RS--GWRTPQVY-  103 (354)
T ss_pred             cccceecccCC-cCccCccccCCC-----CCceeEEEEEeeeccccCCcEeeeEhhhhhccCCccc-cc--CCCCCceE-
Confidence            44555555544 4444432 1222     335 699999999985 568888887776    2211 11  0000 011 


Q ss_pred             CccccceEEEEccCCeEEE-----EcCccccccccCCceEEeCceeecCCCCCCC--CCCCCchhhhcccccceecccee
Q 011852          123 PRFTGVGVQILGADDKYMC-----HYSEESSNFWGSRHELMLGNTFRADKGSQPP--TKEVPPQEFNRRVLEGFQVTPLW  195 (476)
Q Consensus       123 ~~~~g~~iQVl~~~~~y~~-----~y~~~~~~F~~~~~~l~IG~~~~s~~~~~~~--~~~l~~~~f~~~v~~g~q~~~~~  195 (476)
                        |+-  +-|-+.....++     |=-......+..||.+.|+||.+-....-+.  .-++.-|.|.      ++++ +.
T Consensus       104 --fsh--~aVt~~s~~~~~aEk~argglGqag~~~ePf~~widnWt~r~~~~~~~~~~l~a~~d~f~------l~Lt-L~  172 (354)
T COG5621         104 --FSH--AAVTDASRRHYVAEKLARGGLGQAGASSEPFAAWIDNWTMRASTNGLDQIDLNARTDNFV------LRLT-LQ  172 (354)
T ss_pred             --EEE--EEEeccccceehhHhhccccccccccCCCChheeecceeeecccCCCCCcceeeecccce------EEEE-EE
Confidence              122  223333222111     1112244566789999999999887665321  1111111111      2221 11


Q ss_pred             eeeeEecCCCCcccccccccceeeecccccccCCCCCCCCCcccccccccCCCcceEEEecCccEEEEEEECCEEEEEcC
Q 011852          196 HQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQD  275 (476)
Q Consensus       196 ~qG~l~~~~~~~~~~~~~~~~W~~~i~p~~gwG~~~~~~~~~mGpf~~LP~mEphw~V~m~h~lasG~I~~nG~~~dF~~  275 (476)
                      .+|=...-+.                   -|+ .++ .+.+-+--+-.+|+.+           ++|+|.+||+..+++ 
T Consensus       173 a~gP~Vlqg~-------------------~g~-sVk-~~lg~Asyyyslp~~~-----------v~Gtv~v~g~t~~V~-  219 (354)
T COG5621         173 ATGPPVLQGD-------------------RGY-SVK-SALGQASYYYSLPRYE-----------VSGTVSVDGETFEVT-  219 (354)
T ss_pred             ccCCceEeCC-------------------Ccc-ccc-hhccccceeeeeeeee-----------eeeeEEecCceeEEc-
Confidence            1221111010                   011 011 1233344455556554           699999999998887 


Q ss_pred             CcccccCCCCCC----CCCCcEEEEeccCCCCCcceEEE
Q 011852          276 APSYSEKNWGGA----FPRKWFWVQCNVFEGATGEVALT  310 (476)
Q Consensus       276 g~GYiEKNWG~s----FP~~w~W~Qcn~Fd~~~~~~sLt  310 (476)
                      |.+..+|-||++    ==..|=|.-.. +++... +|+.
T Consensus       220 G~AWld~Ewgs~~lA~~q~gwDwfslh-l~~ge~-Lmlf  256 (354)
T COG5621         220 GLAWLDHEWGSQPLASEQVGWDWFSLH-LASGEK-LMLF  256 (354)
T ss_pred             ceeeeccccccccccccccccceEEEE-cCCCcc-eeee
Confidence            899999999984    33456666544 333332 5553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	476
2ich_A	335	Putative ATTH; structural genomics, joint center f	97.01

>2ich_A Putative ATTH; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: NHE; 2.00A {Nitrosomonas europaea} SCOP: b.176.1.1

Probab=97.01  E-value=0.068  Score=54.28  Aligned_cols=205  Identities=14%  Similarity=0.208  Sum_probs=106.7

Q ss_pred             ecCCCCCCCccCCC-cccccCCCCCCceeeEEEEEecCC-CCeEEEEEEEeecCCc--c-cccchhhhhccCCccccceE
Q 011852           56 YKPTPRNRELRTPH-SGYHFDGSTRRFFEGWYFRVSIPE-RKQSFCIIYSVENPAF--K-KKLSSLEVAQHGPRFTGVGV  130 (476)
Q Consensus        56 ~~~~~~~~~~~tPh-sgyhg~g~~~~fFEGWYfKv~~p~-~~~sfA~I~sI~~p~g--~-~~~~af~~~~~~~~~~g~~i  130 (476)
                      |.+-.+++++.-|- -|.|-+-+    -|=||+-.++.+ .++.|+|-.+++.-..  . ...+++..-|.   + ++-+
T Consensus         3 f~~v~p~~~~~fP~D~~~Hp~~~----~EWWY~tg~L~~~~G~~~G~q~TfFR~~~~~~~~~~s~w~~~q~---~-~aH~   74 (335)
T 2ich_A            3 LAPVVPGKALEFPQDFGAHNDFR----IEWWYVTGWLETPTGKPLGFQITFFRTATEIDRDNPSHFAPDQL---I-IAHV   74 (335)
T ss_dssp             CCCCCTTCCCCTTGGGSCCTTSS----EEEEEEEEEEECTTCCEEEEEEEEEEEC--------CCSCCCEE---E-EEEE
T ss_pred             cccCCCCCCccCchhcCcCCCCc----eeeEEEEEEEecCCCCEEEEEEEEEeeecccCCCcccccCCCcE---E-EEEE
Confidence            34445566665552 25553332    599999999975 4778999999882211  0 11012210000   0 0002


Q ss_pred             EEEcc-CCeEEE--EcCc---cccccccCCceEEeCceeecCCCCCCCCCCCCchhhhcccccceeccceeeeeeEecCC
Q 011852          131 QILGA-DDKYMC--HYSE---ESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDG  204 (476)
Q Consensus       131 QVl~~-~~~y~~--~y~~---~~~~F~~~~~~l~IG~~~~s~~~~~~~~~~l~~~~f~~~v~~g~q~~~~~~qG~l~~~~  204 (476)
                      =|.+. .+.++.  ++.-   .......+++.+.|+++.+..+..       .+          +++       .+..+ 
T Consensus        75 Aitd~~~~~~~~~er~~R~~~g~Ag~~~~p~~v~iddw~~~~~~~-------~~----------~~l-------~~~~~-  129 (335)
T 2ich_A           75 ALSDPAIGKLQHDQKIARAGFDLAYARTGNTDVKLDDWIFVRETD-------GR----------YRT-------RIEAE-  129 (335)
T ss_dssp             EEECTTTSSCEEEEEEEEESSCTTTEEECSSEEEETTEEEEECTT-------SC----------EEE-------EEECS-
T ss_pred             EEEecCCCeEEEEEEecccCcCcccccCCCcEEEECCEEEEcCCC-------CC----------EEE-------EEeCC-
Confidence            22331 233332  2221   223456799999999998864221       00          111       11100 


Q ss_pred             CCcccccccccceeeeccc---ccccCCCCCCCCCcccccccccCCCcceEEEecCccEEEEEEECCEEEEEcCCccccc
Q 011852          205 RTNFAETVKSARWEYSTRP---VYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSE  281 (476)
Q Consensus       205 ~~~~~~~~~~~~W~~~i~p---~~gwG~~~~~~~~~mGpf~~LP~mEphw~V~m~h~lasG~I~~nG~~~dF~~g~GYiE  281 (476)
                               ....++..+|   ..--|+.+..+++..|..+       -...+..+-.++|+|+++|+.+.++ |.+..+
T Consensus       130 ---------~f~~dL~l~~~~P~vl~G~~G~s~k~~~~~~a-------SyYyS~P~l~v~Gtl~~~G~~~~V~-G~aW~D  192 (335)
T 2ich_A          130 ---------DFTLTFILTPSQPLMLQGENGFSRKGPGAPQA-------SYYYSEPHLQVSGIINRQGEDIPVT-GTAWLD  192 (335)
T ss_dssp             ---------SEEEEEEEECCSCCEECTBTTEEECSSSTTCE-------EEEEEEEEEEEEEEEEESSCEEEEE-EEEEEE
T ss_pred             ---------CEEEEEEEecCCCceEeCCCceECcCCCCCce-------eEEEecccEEEEEEEEECCEEEEEE-ecEEEc
Confidence                     0123333332   1112443333333322210       1122333334799999999999997 789999


Q ss_pred             CCCCCCCCC----CcEEEEeccCCCCCcceEEEEc
Q 011852          282 KNWGGAFPR----KWFWVQCNVFEGATGEVALTAG  312 (476)
Q Consensus       282 KNWG~sFP~----~w~W~Qcn~Fd~~~~~~sLt~A  312 (476)
                      |.||+++..    .|=|...+- ++.. ++|+..-
T Consensus       193 rEWss~~l~~~q~GWDWf~l~L-ddg~-~Lm~~~l  225 (335)
T 2ich_A          193 REWSSEYLDPNAAGWDWISANL-DDGS-ALMAFQI  225 (335)
T ss_dssp             EEEESSCSCTTEEEEEEEEEEE-TTSC-EEEEEEE
T ss_pred             ccCcCccCCCCCCceEEEEEEc-CCCC-cEEEEEE
Confidence            999998866    788987774 4443 3776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	476
d2icha1	328	AttH-related protein NE1406 {Nitrosomonas europaea	96.7

>d2icha1 b.176.1.1 (A:24-351) AttH-related protein NE1406 {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: AttH-like
superfamily: AttH-like
family: AttH-like
domain: AttH-related protein NE1406
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.70  E-value=0.06  Score=51.99  Aligned_cols=60  Identities=13%  Similarity=0.393  Sum_probs=47.1

Q ss_pred             ceEEEecCccEEEEEEECCEEEEEcCCcccccCCCCCCCCCC----cEEEEeccCCCCCcceEEEEc
Q 011852          250 HWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRK----WFWVQCNVFEGATGEVALTAG  312 (476)
Q Consensus       250 hw~V~m~h~lasG~I~~nG~~~dF~~g~GYiEKNWG~sFP~~----w~W~Qcn~Fd~~~~~~sLt~A  312 (476)
                      .+..+..+-.++|+|+++|+.+.++ |.+..++.||+++-..    |-|.+.+- ++.. ++|+..-
T Consensus       160 syyys~p~l~~~Gtl~~~g~~~~V~-G~~W~DheWgs~~l~~~~~gWdWfsl~L-ddg~-~Lm~~~l  223 (328)
T d2icha1         160 SYYYSEPHLQVSGIINRQGEDIPVT-GTAWLDREWSSEYLDPNAAGWDWISANL-DDGS-ALMAFQI  223 (328)
T ss_dssp             EEEEEEEEEEEEEEEEESSCEEEEE-EEEEEEEEEESSCSCTTEEEEEEEEEEE-TTSC-EEEEEEE
T ss_pred             hHhhhhhheeeeeEEEEcCceEEcc-CCEEEeeeccccccccccceEEEEEEEE-CCCC-eEEEEEe
Confidence            4455555555799999999999997 7999999999887654    99999874 5444 3788765