Citrus Sinensis ID: 011872

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
MTCFIANAKFSSLPLSISTICCSSSSSSSSSPSKDGSKSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
cccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHccHHcccccccccccccccccccccHHccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHcccEEEEEEEEEEEEEEcccccccccccccccEEEccHHHHHHHccccccccccHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHccccccEEEEEEEcccEEEEEEEccEEEEEEcccccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEEcHHHHHHHHHHHcccEEEccccccccHHHHHHHcHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHccccccHHHcccc
ccEEEEEHHHcccccccccccHHHHcccccccHHHcccHHHHHHHHHHHcccccccccccHHHHHHHccccccccHHHHHHHHHHcccccccHHHcHHHHcccccccccccHHHccHHHHHHHHHcccccccccccHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccccEEEccHHHHHHHccccccccHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHccccccEEEEEEccccEEEEEEccccEEEEEcccccHHHHccccccccccHHHHHHHcccEEEEccccccccccccccccEEEEEEccHHHHHHHHHcccEEEcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHEEEEEEHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHcccccHHHHHHHcc
mtcfianakfsslplsisticcssssssssspskdgsksvklredwrkrskpippggtypakdhcsrcglcdtYYIAHVKDACAFLGDGMSRIEGLETvvhgrgrrkdslddtyLGVHEELLYArktkpvegaqwTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYyynsdpddrlsprpvlartpeevlaakgvkptlspnlnTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAassepetvLHYEFMQDYKVHLKHLDghieevpyfclpandlvdviapscyscfDYTNALADLVVGYmgvpkytgismtqhpqyITVRNERGKEMLSLVKNLLEitptissgdrrpfvmetvkaddnakmgrgpsqpapkfVGNLIAFFINlvgpkgleFARYSLDYHTIRNYLHVNRawgkkradkhmPSYAKKIVEMYNQNGQIDQMLSSK
MTCFIANakfsslplSISTICCSsssssssspskdgsksvklredwrkrskpippggtypakdhcsrcGLCDTYYIAHVKDACAFLGDGMSRIEGLetvvhgrgrrkdslddtyLGVHEELLyarktkpvegaqwTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLaakgvkptlspnLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLeitptissgdrrpfVMETVKAddnakmgrgPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLhvnrawgkkradKHMPSYAKKIVEMYNQNGQIDQMLSSK
MTCFIANAKFsslplsisticcssssssssspskdgsksVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
**CFIANAKFSSLPLSISTICC**************************************AKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYN********************LAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTI******************************KFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA******YAKKIVEM**************
*******AKFSSLPLSISTICCSSSSS*****************************GTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITP****************************QPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQ***********
MTCFIANAKFSSLPLSISTI************************DWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
*TCFIANAKFSSLPLSISTICCSSSSSS**S****GSKSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSS*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTCFIANAKFSSLPLSISTICCSSSSSSSSSPSKDGSKSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query475 2.2.26 [Sep-21-2011]
Q8GS60462 7-hydroxymethyl chlorophy yes no 0.901 0.926 0.863 0.0
Q7XTG7471 7-hydroxymethyl chlorophy yes no 0.951 0.959 0.794 0.0
P46015397 Uncharacterized protein a yes no 0.812 0.972 0.527 1e-121
P80490291 Coenzyme F420 hydrogenase yes no 0.496 0.810 0.239 4e-12
Q00391280 Coenzyme F420 hydrogenase no no 0.44 0.746 0.265 3e-10
Q60341287 Coenzyme F420 hydrogenase yes no 0.48 0.794 0.261 3e-08
P19499281 Coenzyme F420 hydrogenase yes no 0.423 0.715 0.257 5e-07
Q58280 620 Uncharacterized protein M no no 0.454 0.348 0.219 0.0007
>sp|Q8GS60|HCAR_ARATH 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Arabidopsis thaliana GN=HCAR PE=1 SV=1 Back     alignment and function desciption
 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/438 (86%), Positives = 405/438 (92%), Gaps = 10/438 (2%)

Query: 38  KSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLE 97
           K VKLREDWR++S+PIPPGGTYPAKDHCS+CGLCDTYYIAHVK+ACAFLGDGMSRIE LE
Sbjct: 35  KKVKLREDWREKSRPIPPGGTYPAKDHCSQCGLCDTYYIAHVKEACAFLGDGMSRIESLE 94

Query: 98  TVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVC 157
            VVHGRGR+ DSL DTY GVH+E LYARK KPVEGAQWTGIVTTIAIEMLK+ MVEAVVC
Sbjct: 95  PVVHGRGRKADSLQDTYFGVHQEQLYARKLKPVEGAQWTGIVTTIAIEMLKSNMVEAVVC 154

Query: 158 VQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRL 217
           VQS          DP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVKRL
Sbjct: 155 VQS----------DPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVKRL 204

Query: 218 LFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFM 277
           LFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYEFM
Sbjct: 205 LFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYEFM 264

Query: 278 QDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTG 337
           QDYKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY+G
Sbjct: 265 QDYKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKYSG 324

Query: 338 ISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPS 397
           ++MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+GP+
Sbjct: 325 LNMTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQGPA 384

Query: 398 QPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKK 457
           QPAP FVGN+IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYAKK
Sbjct: 385 QPAPLFVGNIIAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYAKK 444

Query: 458 IVEMYNQNGQIDQMLSSK 475
           IVEMYN+NGQID+MLS K
Sbjct: 445 IVEMYNKNGQIDKMLSKK 462
Probable iron-sulfur flavoprotein that converts 7-hydroxymethyl chlorophyll a to chlorophyll a using ferredoxin as a reducing equivalent. Catalyzes the reduction of a hydroxymethyl group to a methyl group.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 7EC: .EC: 7EC: .EC: 2
>sp|Q7XTG7|HCAR_ORYSJ 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=HCAR PE=3 SV=2 Back     alignment and function description
>sp|P46015|Y1601_NOSS1 Uncharacterized protein all1601 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all1601 PE=4 SV=2 Back     alignment and function description
>sp|P80490|FRHB_METBF Coenzyme F420 hydrogenase subunit beta OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=frhB PE=1 SV=2 Back     alignment and function description
>sp|Q00391|FRHB_METVO Coenzyme F420 hydrogenase subunit beta OS=Methanococcus voltae GN=frhB PE=3 SV=1 Back     alignment and function description
>sp|Q60341|FRHB_METJA Coenzyme F420 hydrogenase subunit beta OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=frhB PE=3 SV=1 Back     alignment and function description
>sp|P19499|FRHB_METTH Coenzyme F420 hydrogenase subunit beta OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=frhB PE=1 SV=4 Back     alignment and function description
>sp|Q58280|Y870_METJA Uncharacterized protein MJ0870 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0870 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
255554300458 Coenzyme F420 hydrogenase subunit beta, 0.949 0.984 0.850 0.0
225433343457 PREDICTED: uncharacterized protein all16 0.901 0.936 0.872 0.0
356534864452 PREDICTED: uncharacterized protein all16 0.901 0.946 0.865 0.0
297848696461 coenzyme F420 hydrogenase family [Arabid 0.96 0.989 0.833 0.0
449487600459 PREDICTED: LOW QUALITY PROTEIN: 7-hydrox 0.957 0.991 0.829 0.0
449433213459 PREDICTED: 7-hydroxymethyl chlorophyll a 0.957 0.991 0.829 0.0
356577586452 PREDICTED: uncharacterized protein all16 0.951 1.0 0.804 0.0
224110688456 predicted protein [Populus trichocarpa] 0.890 0.927 0.866 0.0
30678943462 coenzyme F420 hydrogenase beta subunit [ 0.901 0.926 0.863 0.0
2494116433 Similar to Synechocystis hypothetical pr 0.875 0.960 0.837 0.0
>gi|255554300|ref|XP_002518190.1| Coenzyme F420 hydrogenase subunit beta, putative [Ricinus communis] gi|223542786|gb|EEF44323.1| Coenzyme F420 hydrogenase subunit beta, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/461 (85%), Positives = 421/461 (91%), Gaps = 10/461 (2%)

Query: 15  LSISTICCSSSSSSSSSPSKDGSKSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTY 74
           LS+ T   SS SSS  + S   +KSVKLREDWR+RS+PIPPGGTYPAKDHCSRCGLCDTY
Sbjct: 8   LSLPTFISSSYSSSKDTNSNSSNKSVKLREDWRQRSRPIPPGGTYPAKDHCSRCGLCDTY 67

Query: 75  YIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQ 134
           YI+HV++ACAFLGDGMSRIEGLE VVHGRGR+ DS D+ YLGVHEELLYARKTKPVEGAQ
Sbjct: 68  YISHVRNACAFLGDGMSRIEGLEAVVHGRGRKIDSSDEMYLGVHEELLYARKTKPVEGAQ 127

Query: 135 WTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKG 194
           WTGIVTTIAIEMLK  MV+AV+CVQS          DP+DRLSPRPVLARTP+EVLAAKG
Sbjct: 128 WTGIVTTIAIEMLKADMVDAVICVQS----------DPEDRLSPRPVLARTPQEVLAAKG 177

Query: 195 VKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTR 254
           VKPTLSPNLNTLALVEA+GVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTR
Sbjct: 178 VKPTLSPNLNTLALVEASGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTR 237

Query: 255 EGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYS 314
           EGLDKFLKAAS EPETVLHYEFMQDYKVHLKHLDG IEEVPYFCLPA DLVDVIAPSCYS
Sbjct: 238 EGLDKFLKAASDEPETVLHYEFMQDYKVHLKHLDGRIEEVPYFCLPATDLVDVIAPSCYS 297

Query: 315 CFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSG 374
           CFDYTNALADLVVGYMGVPKY G+SMTQHPQY+TVRN+RG+EML LV+ LLEITPTISSG
Sbjct: 298 CFDYTNALADLVVGYMGVPKYAGVSMTQHPQYVTVRNDRGREMLDLVRGLLEITPTISSG 357

Query: 375 DRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRN 434
           DRRPFVMETVKADDNAK+G+GPSQ APKFVGN +AF +NL+GPKGLEFARYSLDYHTIRN
Sbjct: 358 DRRPFVMETVKADDNAKLGKGPSQSAPKFVGNFLAFILNLIGPKGLEFARYSLDYHTIRN 417

Query: 435 YLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK 475
           YL+ NRAWGK RA++H PSYAKKIVEMYNQNGQIDQML +K
Sbjct: 418 YLYTNRAWGKARAERHTPSYAKKIVEMYNQNGQIDQMLQNK 458

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433343|ref|XP_002285592.1| PREDICTED: uncharacterized protein all1601 [Vitis vinifera] gi|297741879|emb|CBI33314.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356534864|ref|XP_003535971.1| PREDICTED: uncharacterized protein all1601-like [Glycine max] Back     alignment and taxonomy information
>gi|297848696|ref|XP_002892229.1| coenzyme F420 hydrogenase family [Arabidopsis lyrata subsp. lyrata] gi|297338071|gb|EFH68488.1| coenzyme F420 hydrogenase family [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449487600|ref|XP_004157707.1| PREDICTED: LOW QUALITY PROTEIN: 7-hydroxymethyl chlorophyll a reductase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449433213|ref|XP_004134392.1| PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356577586|ref|XP_003556905.1| PREDICTED: uncharacterized protein all1601-like [Glycine max] Back     alignment and taxonomy information
>gi|224110688|ref|XP_002315601.1| predicted protein [Populus trichocarpa] gi|222864641|gb|EEF01772.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30678943|ref|NP_171956.2| coenzyme F420 hydrogenase beta subunit [Arabidopsis thaliana] gi|75150253|sp|Q8GS60.1|HCAR_ARATH RecName: Full=7-hydroxymethyl chlorophyll a reductase, chloroplastic; Flags: Precursor gi|25083091|gb|AAN72040.1| unknown protein [Arabidopsis thaliana] gi|26451024|dbj|BAC42618.1| unknown protein [Arabidopsis thaliana] gi|30387563|gb|AAP31947.1| At1g04620 [Arabidopsis thaliana] gi|332189601|gb|AEE27722.1| coenzyme F420 hydrogenase beta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2494116|gb|AAB80625.1| Similar to Synechocystis hypothetical protein (gb|D90915) [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
TAIR|locus:2197848462 HCAR "7-hydroxymethyl chloroph 0.896 0.922 0.864 1.2e-207
TAIR|locus:2197848 HCAR "7-hydroxymethyl chlorophyll a (HMChl) reductase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2008 (711.9 bits), Expect = 1.2e-207, P = 1.2e-207
 Identities = 377/436 (86%), Positives = 404/436 (92%)

Query:    40 VKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETV 99
             VKLREDWR++S+PIPPGGTYPAKDHCS+CGLCDTYYIAHVK+ACAFLGDGMSRIE LE V
Sbjct:    37 VKLREDWREKSRPIPPGGTYPAKDHCSQCGLCDTYYIAHVKEACAFLGDGMSRIESLEPV 96

Query:   100 VHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQ 159
             VHGRGR+ DSL DTY GVH+E LYARK KPVEGAQWTGIVTTIAIEMLK+ MVEAVVCVQ
Sbjct:    97 VHGRGRKADSLQDTYFGVHQEQLYARKLKPVEGAQWTGIVTTIAIEMLKSNMVEAVVCVQ 156

Query:   160 SLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLF 219
             S          DP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVKRLLF
Sbjct:   157 S----------DPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVKRLLF 206

Query:   220 CGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQD 279
             CGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYEFMQD
Sbjct:   207 CGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYEFMQD 266

Query:   280 YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGIS 339
             YKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY+G++
Sbjct:   267 YKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKYSGLN 326

Query:   340 MTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQP 399
             MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+GP+QP
Sbjct:   327 MTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQGPAQP 386

Query:   400 APKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIV 459
             AP FVGN+IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYAKKIV
Sbjct:   387 APLFVGNIIAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYAKKIV 446

Query:   460 EMYNQNGQIDQMLSSK 475
             EMYN+NGQID+MLS K
Sbjct:   447 EMYNKNGQIDKMLSKK 462


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      475       446   0.00091  118 3  11 22  0.38    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  288 KB (2150 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  36.96u 0.10s 37.06t   Elapsed:  00:00:01
  Total cpu time:  36.96u 0.10s 37.06t   Elapsed:  00:00:01
  Start:  Mon May 20 18:25:44 2013   End:  Mon May 20 18:25:45 2013
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0050454 "coenzyme F420 hydrogenase activity" evidence=ISS
GO:0015994 "chlorophyll metabolic process" evidence=IDA
GO:0033354 "chlorophyll cycle" evidence=IDA
GO:0090415 "7-hydroxymethyl chlorophyll a reductase activity" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GS60HCAR_ARATH1, ., 1, 7, ., 7, ., 20.86300.90100.9264yesno
Q7XTG7HCAR_ORYSJ1, ., 1, 7, ., 7, ., 20.79400.95150.9596yesno
P46015Y1601_NOSS1No assigned EC number0.52770.81260.9722yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
COG1035332 COG1035, FrhB, Coenzyme F420-reducing hydrogenase, 6e-58
pfam04432162 pfam04432, FrhB_FdhB_C, Coenzyme F420 hydrogenase/ 9e-38
pfam0442282 pfam04422, FrhB_FdhB_N, Coenzyme F420 hydrogenase/ 3e-23
PRK09325282 PRK09325, PRK09325, coenzyme F420-reducing hydroge 4e-18
TIGR03289275 TIGR03289, frhB, coenzyme F420 hydrogenase, subuni 5e-16
PRK09326341 PRK09326, PRK09326, F420H2 dehydrogenase subunit F 3e-09
>gnl|CDD|223966 COG1035, FrhB, Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion] Back     alignment and domain information 
 Score =  194 bits (494), Expect = 6e-58
 Identities = 89/324 (27%), Positives = 135/324 (41%), Gaps = 44/324 (13%)

Query: 59  YPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVH 118
                 C  C     Y I    +A   + + M    G            D  +  Y  V+
Sbjct: 4   AGLCTGCGTCAAVCPYAITERDEAPLLIEECMDNGHG---TCLKVCPEVD--EGKYGEVY 58

Query: 119 EELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSP 178
           E    +  +K  +GAQ  G+VT I    L+ G+++ VV V S            ++   P
Sbjct: 59  EA--RSTDSKLRKGAQDGGVVTAILAYALEEGLIDGVVVVGS-----------GEEEWKP 105

Query: 179 RPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAA---GVKRLLFCGVGCQVQALRSVEHH 235
            PV+A TPEE+L   G K T+SPNL   AL EA    G++R+   G  CQ+QA+R ++  
Sbjct: 106 IPVVATTPEELLETAGSKYTISPNL--SALKEAVRKYGLERVAVVGTPCQIQAVRKLQKF 163

Query: 236 LNLEK------LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDG 289
               K      +YV+G  C++N + EGL KFL+         +    ++  K  ++  DG
Sbjct: 164 DLGLKHRREKIVYVIGLFCMENFSYEGLKKFLEEDLGVDPEDVEKMDIRKGKFVVELKDG 223

Query: 290 HIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITV 349
             E       P  +  +     C  C D+   LAD+ VG +G P             + V
Sbjct: 224 --EVKEI---PLKETEEYGPEGCRVCTDFVAELADISVGSVGSPDGW--------STVLV 270

Query: 350 RNERGKEMLSLV--KNLLEITPTI 371
           R E+G+E+L       LLE+    
Sbjct: 271 RTEKGEEILDGAVEAGLLEVKEIE 294

Length = 332
>gnl|CDD|218086 pfam04432, FrhB_FdhB_C, Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Back     alignment and domain information
>gnl|CDD|218081 pfam04422, FrhB_FdhB_N, Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Back     alignment and domain information
>gnl|CDD|236466 PRK09325, PRK09325, coenzyme F420-reducing hydrogenase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|132332 TIGR03289, frhB, coenzyme F420 hydrogenase, subunit beta Back     alignment and domain information
>gnl|CDD|181779 PRK09326, PRK09326, F420H2 dehydrogenase subunit F; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 475
TIGR03289275 frhB coenzyme F420 hydrogenase, subunit beta. This 100.0
PRK09326341 F420H2 dehydrogenase subunit F; Provisional 100.0
COG1035332 FrhB Coenzyme F420-reducing hydrogenase, beta subu 100.0
PRK09325282 coenzyme F420-reducing hydrogenase subunit beta; V 100.0
PF04432161 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogena 100.0
PF0442282 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogena 99.83
PF1469759 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE 97.14
COG1143172 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino 96.72
PF1323752 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A. 96.15
PF1283724 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 96.1
PF1279722 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 95.53
PF0003724 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T 95.42
PF1318755 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_ 93.76
TIGR02512374 Fe_only_hydrog hydrogenases, Fe-only. This model d 93.76
PRK08318420 dihydropyrimidine dehydrogenase subunit B; Validat 93.59
TIGR0293691 fdxN_nitrog ferredoxin III, nif-specific. Members 93.55
PF1283852 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014 93.5
TIGR02494295 PFLE_PFLC glycyl-radical enzyme activating protein 93.42
COG1149284 MinD superfamily P-loop ATPase containing an inser 93.23
PRK08348120 NADH-plastoquinone oxidoreductase subunit; Provisi 93.23
PF1280017 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 93.02
PRK06273165 ferredoxin; Provisional 92.81
PRK05888164 NADH dehydrogenase subunit I; Provisional 92.35
COG114491 Pyruvate:ferredoxin oxidoreductase and related 2-o 92.34
CHL00014167 ndhI NADH dehydrogenase subunit I 92.32
PRK08222181 hydrogenase 4 subunit H; Validated 92.06
TIGR01971122 NuoI NADH-quinone oxidoreductase, chain I. This mo 92.01
COG114599 NapF Ferredoxin [Energy production and conversion] 91.91
TIGR00403183 ndhI NADH-plastoquinone oxidoreductase subunit I p 91.82
PF1469759 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE 91.73
TIGR021761165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 91.62
PRK09626103 oorD 2-oxoglutarate-acceptor oxidoreductase subuni 91.32
PF1279815 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 91.3
CHL0006581 psaC photosystem I subunit VII 91.14
COG114491 Pyruvate:ferredoxin oxidoreductase and related 2-o 91.11
TIGR02912314 sulfite_red_C sulfite reductase, subunit C. Member 91.05
PRK12387180 formate hydrogenlyase complex iron-sulfur subunit; 90.93
COG1148622 HdrA Heterodisulfide reductase, subunit A and rela 90.78
PRK14028312 pyruvate ferredoxin oxidoreductase subunit gamma/d 90.7
TIGR00276282 iron-sulfur cluster binding protein, putative. Thi 90.66
PRK09625133 porD pyruvate flavodoxin oxidoreductase subunit de 90.58
PLN0007181 photosystem I subunit VII; Provisional 90.44
TIGR02745434 ccoG_rdxA_fixG cytochrome c oxidase accessory prot 89.56
PF1374669 Fer4_18: 4Fe-4S dicluster domain 89.39
PF1318357 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_ 89.19
TIGR0217978 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta 89.12
COG2768354 Uncharacterized Fe-S center protein [General funct 89.02
COG1152772 CdhA CO dehydrogenase/acetyl-CoA synthase alpha su 88.92
COG1245 591 Predicted ATPase, RNase L inhibitor (RLI) homolog 88.88
PF1318755 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_ 88.83
PRK09624105 porD pyuvate ferredoxin oxidoreductase subunit del 88.81
PRK1544995 ferredoxin-like protein FixX; Provisional 88.12
COG114668 Ferredoxin [Energy production and conversion] 88.06
PRK09477271 napH quinol dehydrogenase membrane component; Prov 88.0
COG114168 Fer Ferredoxin [Energy production and conversion] 87.9
PF1345965 Fer4_15: 4Fe-4S single cluster domain 87.43
COG1139459 Uncharacterized conserved protein containing a fer 87.22
TIGR02163255 napH_ ferredoxin-type protein, NapH/MauN family. M 87.18
PRK09623105 vorD 2-ketoisovalerate ferredoxin oxidoreductase s 86.94
PRK0265181 photosystem I subunit VII; Provisional 86.92
PRK06991270 ferredoxin; Provisional 86.88
TIGR00314784 cdhA CO dehydrogenase/acetyl-CoA synthase complex, 86.71
PF1348467 Fer4_16: 4Fe-4S double cluster binding domain 86.62
PRK05113191 electron transport complex protein RnfB; Provision 86.58
TIGR02060132 aprB adenosine phosphosulphate reductase, beta sub 86.27
PRK10194163 ferredoxin-type protein; Provisional 86.08
TIGR00402101 napF ferredoxin-type protein NapF. The gene codes 86.07
COG1148622 HdrA Heterodisulfide reductase, subunit A and rela 85.31
PF1337058 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 84.85
COG4231640 Indolepyruvate ferredoxin oxidoreductase, alpha an 84.84
COG1149284 MinD superfamily P-loop ATPase containing an inser 84.52
TIGR0304880 PS_I_psaC photosystem I iron-sulfur protein PsaC. 83.94
TIGR02700234 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T 83.93
COG2221317 DsrA Dissimilatory sulfite reductase (desulfovirid 83.74
COG1600337 Uncharacterized Fe-S protein [Energy production an 83.41
PF1323752 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A. 83.16
TIGR01944165 rnfB electron transport complex, RnfABCDGE type, B 83.02
TIGR0293691 fdxN_nitrog ferredoxin III, nif-specific. Members 82.91
COG2878198 Predicted NADH:ubiquinone oxidoreductase, subunit 82.75
PRK05035695 electron transport complex protein RnfC; Provision 82.42
PRK13409 590 putative ATPase RIL; Provisional 81.8
TIGR03275259 methan_mark_8 putative methanogenesis marker prote 81.47
TIGR03294228 FrhG coenzyme F420 hydrogenase, subunit gamma. Thi 81.34
PRK09898208 hypothetical protein; Provisional 81.17
PF1283852 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014 80.36
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta Back     alignment and domain information 
Probab=100.00  E-value=2.1e-52  Score=417.51  Aligned_cols=243  Identities=28%  Similarity=0.457  Sum_probs=210.6

Q ss_pred             CCccceeEEEEccCC--ccCCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhh
Q 011872          115 LGVHEELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAA  192 (475)
Q Consensus       115 ~G~~~~~y~a~s~d~--r~~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~  192 (475)
                      ||+|..+|+||++|+  |.+|||||++|+|+.++||+|.|||||+++           ..+++|+++|++++|+|||.++
T Consensus         1 ~G~~~~~y~a~~~d~~ir~~sssGG~~tall~~lLe~g~IDgvv~~~-----------~~~~~~~~~~~~~~~~eel~~~   69 (275)
T TIGR03289         1 LGPYKEIVSARSTDNEVLKKAQDGGIVSAILIYALEENIIDGAIVAG-----------PGDEPWKPEPLVATTPEEILKA   69 (275)
T ss_pred             CCceeEEEEEEcCCccccccCCcHHHHHHHHHHHHHcCCccEEEEEe-----------cCCCCCceeEEEECCHHHHHHh
Confidence            699999999999987  889999999999999999999999999975           4578899999999999999999


Q ss_pred             cCCCCcccCchHHHHHHHH-cCCCEEEEEecchHHHHHHHHHHh-----cCCCc-eEEEcccCCCCCCHHHHHHHHHH-h
Q 011872          193 KGVKPTLSPNLNTLALVEA-AGVKRLLFCGVGCQVQALRSVEHH-----LNLEK-LYVLGTNCVDNGTREGLDKFLKA-A  264 (475)
Q Consensus       193 ~GSKY~~S~~l~~l~ev~~-~g~kkVlfvGtPCQI~ALr~l~~~-----l~~e~-Ly~Igl~C~G~~S~~~~~~~L~~-~  264 (475)
                      +||||+||++++.|+++.+ .+.++||||||||||+|||+++++     ...++ +|+|||+|||+||++.|.+||++ .
T Consensus        70 ~GSkY~~s~~~~~l~~~~~~~~~~~va~vGtPCqi~alr~l~~~~~~~~~~~d~i~~~Igl~C~g~~s~~~~~~~l~~~~  149 (275)
T TIGR03289        70 AGTKYTVCPNLSVLKEAVREYGLEKIGTVGTPCQVMGLRKAQTYPVGVRNVVDKIALSIGIYCMENFPYESLKTFINDKC  149 (275)
T ss_pred             cCCcccCCccHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhccccccccccceEEEEeeeCCCCCCHHHHHHHHHHhc
Confidence            9999999999999999753 457999999999999999999863     12367 59999999999999999999976 5


Q ss_pred             CCCCCceEEEEEEeCcEEEEEEecCcEEeeccccccccccccccCCCCccCcCCCCCCCcEEeeeccCCCCCCccCCCCc
Q 011872          265 SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHP  344 (475)
Q Consensus       265 ~~~~~~V~~i~FR~~g~~~i~~~dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~~~ADITiG~~G~~~~~G~S~~~g~  344 (475)
                      ++++++|.+++||. |.+++.+.||+++.+|+...     ..+.|++|+.|+|+++++||||+|++|.+.  |+|     
T Consensus       150 g~~~~~v~~~~~r~-g~~~v~~~dg~~~~~~~~~~-----~~~~r~~C~~C~D~~~~~ADIsvGd~~~~~--G~s-----  216 (275)
T TIGR03289       150 GVTMEQVTKMDIGK-GKFWVYTTGGEVGKIPLKET-----HGYEQAGCHVCMDYVAELADISTGSVGSPD--GWS-----  216 (275)
T ss_pred             CCCHHHccEEEeEC-CcEEEEECCCcEEEEEhHHh-----hhhcCCCCccCCCCCCcccceeeeccCCCC--Cce-----
Confidence            88899999999995 56778899999877764443     457899999999999999999999888775  655     


Q ss_pred             eEEEEeChHHHHHHHHhh--ccceeccCCCCCCCCHHHHH
Q 011872          345 QYITVRNERGKEMLSLVK--NLLEITPTISSGDRRPFVME  382 (475)
Q Consensus       345 ~~VlVrTekG~~Ll~~~~--~~le~~~~~~~g~~~~~~~~  382 (475)
                       +|+|||++|++||+.+.  +.++..+++......+.+.+
T Consensus       217 -~VivrT~kG~~ll~~a~~~g~ie~~~~~~~~~~~~~l~~  255 (275)
T TIGR03289       217 -TVIIRTDKGESIINKAVEAGILETKPIEEVKPGLELLEK  255 (275)
T ss_pred             -EEEEECHHHHHHHHHHHHcCceeecccccccccHHHHHH
Confidence             99999999999999997  56888887654443444433

This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
>PRK09326 F420H2 dehydrogenase subunit F; Provisional Back     alignment and domain information
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated Back     alignment and domain information
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1 Back     alignment and domain information
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1 Back     alignment and domain information
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B Back     alignment and domain information
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion] Back     alignment and domain information
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A Back     alignment and domain information
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J Back     alignment and domain information
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific Back     alignment and domain information
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family Back     alignment and domain information
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] Back     alignment and domain information
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional Back     alignment and domain information
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PRK06273 ferredoxin; Provisional Back     alignment and domain information
>PRK05888 NADH dehydrogenase subunit I; Provisional Back     alignment and domain information
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion] Back     alignment and domain information
>CHL00014 ndhI NADH dehydrogenase subunit I Back     alignment and domain information
>PRK08222 hydrogenase 4 subunit H; Validated Back     alignment and domain information
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I Back     alignment and domain information
>COG1145 NapF Ferredoxin [Energy production and conversion] Back     alignment and domain information
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein Back     alignment and domain information
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed Back     alignment and domain information
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>CHL00065 psaC photosystem I subunit VII Back     alignment and domain information
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR02912 sulfite_red_C sulfite reductase, subunit C Back     alignment and domain information
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional Back     alignment and domain information
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] Back     alignment and domain information
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional Back     alignment and domain information
>TIGR00276 iron-sulfur cluster binding protein, putative Back     alignment and domain information
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>PLN00071 photosystem I subunit VII; Provisional Back     alignment and domain information
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG Back     alignment and domain information
>PF13746 Fer4_18: 4Fe-4S dicluster domain Back     alignment and domain information
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N Back     alignment and domain information
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>COG2768 Uncharacterized Fe-S center protein [General function prediction only] Back     alignment and domain information
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion] Back     alignment and domain information
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] Back     alignment and domain information
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J Back     alignment and domain information
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>PRK15449 ferredoxin-like protein FixX; Provisional Back     alignment and domain information
>COG1146 Ferredoxin [Energy production and conversion] Back     alignment and domain information
>PRK09477 napH quinol dehydrogenase membrane component; Provisional Back     alignment and domain information
>COG1141 Fer Ferredoxin [Energy production and conversion] Back     alignment and domain information
>PF13459 Fer4_15: 4Fe-4S single cluster domain Back     alignment and domain information
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion] Back     alignment and domain information
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family Back     alignment and domain information
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>PRK02651 photosystem I subunit VII; Provisional Back     alignment and domain information
>PRK06991 ferredoxin; Provisional Back     alignment and domain information
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit Back     alignment and domain information
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain Back     alignment and domain information
>PRK05113 electron transport complex protein RnfB; Provisional Back     alignment and domain information
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit Back     alignment and domain information
>PRK10194 ferredoxin-type protein; Provisional Back     alignment and domain information
>TIGR00402 napF ferredoxin-type protein NapF Back     alignment and domain information
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] Back     alignment and domain information
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] Back     alignment and domain information
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC Back     alignment and domain information
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family Back     alignment and domain information
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion] Back     alignment and domain information
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A Back     alignment and domain information
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit Back     alignment and domain information
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific Back     alignment and domain information
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion] Back     alignment and domain information
>PRK05035 electron transport complex protein RnfC; Provisional Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8 Back     alignment and domain information
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma Back     alignment and domain information
>PRK09898 hypothetical protein; Provisional Back     alignment and domain information
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 73/490 (14%), Positives = 148/490 (30%), Gaps = 139/490 (28%)

Query: 63  DHCSRCGLCDTYYIAHVKDA-CAFLGDGMSRI---EGLETVVHGRGRRKDSLDDTYLGVH 118
            +  +  +   +  A V +  C  + D    I   E ++ ++      KD++  T     
Sbjct: 15  QYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLR--- 66

Query: 119 EELLYARKTKPVEGAQ------------WTGIVTTIAIEMLKTGMVEA--VVCVQSLVIL 164
             L +   +K  E  Q            +  +++ I  E  +  M+    +     L   
Sbjct: 67  --LFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRL--- 119

Query: 165 SYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGC 224
              YN +     +   V +R  +  L  +     L P  N + +    GV      G G 
Sbjct: 120 ---YNDNQ--VFAKYNV-SR-LQPYLKLRQALLELRPAKN-VLID---GVL-----GSGK 163

Query: 225 QV---QALRS--VEHHLNLEKLYV-LGTNCVDNGTREGLDKFL----KAASSEPETVLHY 274
                    S  V+  ++ +  ++ L          E L K L       +S  +   + 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 275 EF-MQDYKVHLKHLDGHIEEVPYF-CLPANDLV--DVIAPSCYSCFDY-------TN--A 321
           +  +   +  L+ L   ++  PY  CL    LV  +V     ++ F+        T    
Sbjct: 224 KLRIHSIQAELRRL---LKSKPYENCL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 322 LADLVVGYMGVP--------------------KYTGISMTQ--------HPQYITVRNER 353
           + D +                           KY               +P+ +++  E 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 354 GKEMLSLVKNLL-----EITPTISSG--------DRRPFVMETVKADDNAKMGRGPSQPA 400
            ++ L+   N       ++T  I S          R+ F   +V    +A +   P+   
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHI---PTILL 392

Query: 401 PKFVGNLIAFFINLVGPKGLEFARYSL---DYHTIRNYLH----VNRAWGKKRADKHMPS 453
                ++I   + +V     +  +YSL           +       +   +     H   
Sbjct: 393 SLIWFDVIKSDVMVVVN---KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--- 446

Query: 454 YAKKIVEMYN 463
             + IV+ YN
Sbjct: 447 --RSIVDHYN 454
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
2fgo_A82 Ferredoxin; allochromatium vinosum, [4Fe-4S] clust 94.64
1rgv_A80 Ferredoxin; electron transport; 2.90A {Thauera aro 94.53
1xer_A103 Ferredoxin; electron transport, iron-sulfur, dupli 94.37
3i9v_9182 NADH-quinone oxidoreductase subunit 9; electron tr 94.19
3eun_A82 Ferredoxin; electron transport, [4Fe-4S] cluster, 94.04
2zvs_A85 Uncharacterized ferredoxin-like protein YFHL; elec 93.91
1rof_A60 Ferredoxin; electron transport, iron-sulfur; NMR { 93.8
2fdn_A55 Ferredoxin; electron transport, iron-sulfur, 4Fe-4 93.69
7fd1_A106 FD1, protein (7-Fe ferredoxin I); electron transpo 93.57
1jb0_C80 Photosystem I iron-sulfur center; membrane protein 93.25
1hfe_L421 Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg 93.15
1bc6_A77 7-Fe ferredoxin; electron transport, iron-sulfur; 92.82
1h98_A78 Ferredoxin; electron transport, thermophilic, iron 92.04
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 92.03
2v2k_A105 Ferredoxin; iron, transport, iron-sulfur, mycobact 91.35
1iqz_A81 Ferredoxin; iron-sulfer protein, ultlahigh resolut 90.85
1dax_A64 Ferredoxin I; electron transport, electron-transfe 90.3
2fdn_A55 Ferredoxin; electron transport, iron-sulfur, 4Fe-4 90.15
1gte_A1025 Dihydropyrimidine dehydrogenase; electron transfer 90.09
7fd1_A106 FD1, protein (7-Fe ferredoxin I); electron transpo 89.95
3gyx_B166 Adenylylsulfate reductase; oxidoreductase; HET: FA 89.88
1bc6_A77 7-Fe ferredoxin; electron transport, iron-sulfur; 89.76
1sj1_A66 Ferredoxin; thermostability, iron-sulfur cluster, 89.52
1jnr_B150 Adenylylsulfate reductase; oxidoreductase; HET: FA 89.52
1dwl_A59 Ferredoxin I; electron transfer, model, heteronucl 89.39
1h98_A78 Ferredoxin; electron transport, thermophilic, iron 89.17
1f2g_A58 Ferredoxin II; electron transport, FDII desulfovib 88.59
2v2k_A105 Ferredoxin; iron, transport, iron-sulfur, mycobact 86.27
3c8y_A574 Iron hydrogenase 1; dithiomethylether, H-cluster, 85.61
2bs2_B241 Quinol-fumarate reductase iron-sulfur subunit B; 2 84.95
2wdq_B238 Succinate dehydrogenase iron-sulfur subunit; succi 84.89
1ti6_B274 Pyrogallol hydroxytransferase small subunit; molyb 84.81
2ivf_B352 Ethylbenzene dehydrogenase beta-subunit; anaerobic 83.68
1xer_A103 Ferredoxin; electron transport, iron-sulfur, dupli 83.39
1kf6_B243 Fumarate reductase iron-sulfur protein; respiratio 83.38
1q16_B512 Respiratory nitrate reductase 1 beta chain; membra 82.67
1jb0_C80 Photosystem I iron-sulfur center; membrane protein 82.01
3j16_B 608 RLI1P; ribosome recycling, translation, eukarya, r 81.06
1kqf_B294 FDH-N beta S, formate dehydrogenase, nitrate-induc 80.81
3i9v_9182 NADH-quinone oxidoreductase subunit 9; electron tr 80.3
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa} Back     alignment and structure
Probab=94.64  E-value=0.011  Score=46.73  Aligned_cols=20  Identities=20%  Similarity=0.567  Sum_probs=17.5

Q ss_pred             CCCCCCCccCCchhhcchhh
Q 011872           59 YPAKDHCSRCGLCDTYYIAH   78 (475)
Q Consensus        59 ~~~~~lCtGCGaC~~iCp~~   78 (475)
                      ++..+.|++||.|..+||.+
T Consensus         2 ~~~~~~C~~C~~C~~~CP~~   21 (82)
T 2fgo_A            2 LKITDDCINCDVCEPECPNG   21 (82)
T ss_dssp             BCCCTTCCCCCTTGGGCTTC
T ss_pred             ceeCCCCCChhhHHHHCChh
Confidence            46678999999999999964
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1 Back     alignment and structure
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A Back     alignment and structure
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9* Back     alignment and structure
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A Back     alignment and structure
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli} Back     alignment and structure
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Back     alignment and structure
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A Back     alignment and structure
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ... Back     alignment and structure
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* Back     alignment and structure
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Back     alignment and structure
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A Back     alignment and structure
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis} Back     alignment and structure
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* Back     alignment and structure
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Back     alignment and structure
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A Back     alignment and structure
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Back     alignment and structure
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ... Back     alignment and structure
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Back     alignment and structure
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A Back     alignment and structure
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A Back     alignment and structure
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B* Back     alignment and structure
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 Back     alignment and structure
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 Back     alignment and structure
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Back     alignment and structure
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis} Back     alignment and structure
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* Back     alignment and structure
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B* Back     alignment and structure
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B* Back     alignment and structure
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Back     alignment and structure
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} Back     alignment and structure
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A Back     alignment and structure
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B* Back     alignment and structure
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B* Back     alignment and structure
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B* Back     alignment and structure
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
d1gtea5173 Dihydropyrimidine dehydrogenase, C-terminal domain 96.45
d1hfel285 Fe-only hydrogenase larger subunit, N-domain {Desu 96.26
d2c42a5117 Pyruvate-ferredoxin oxidoreductase, PFOR, domain V 95.87
d2fdna_55 Ferredoxin II {Clostridium acidurici [TaxId: 1556] 95.83
d1blua_80 Ferredoxin II {Chromatium vinosum [TaxId: 1049]} 95.43
d1xera_103 Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} 95.43
d1jb0c_80 Photosystem I iron-sulfur protein PsaC {Synechococ 95.33
d1vjwa_59 Ferredoxin A {Thermotoga maritima [TaxId: 2336]} 95.24
d2fug91154 NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus 95.22
d1bc6a_77 Ferredoxin {Bacillus schlegelii [TaxId: 1484]} 95.12
d1rgva_80 Ferredoxin II {Thauera aromatica [TaxId: 59405]} 95.03
d1dura_55 Ferredoxin II {Peptostreptococcus asaccharolyticus 95.0
d1sj1a_66 Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI 94.77
d1fxra_64 Ferredoxin I {Sulfate-reducing bacteria (Desulfovi 94.7
d2fdna_55 Ferredoxin II {Clostridium acidurici [TaxId: 1556] 94.49
d1jnrb_149 Adenylylsulfate reductase B subunit {Archaeon Arch 94.44
d1h98a_77 Ferredoxin {Thermus thermophilus [TaxId: 274]} 94.21
d3c8ya383 Fe-only hydrogenase, second domain {Clostridium pa 94.04
d1bc6a_77 Ferredoxin {Bacillus schlegelii [TaxId: 1484]} 93.92
d1fxda_58 Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} 93.76
d7fd1a_106 Ferredoxin {Azotobacter vinelandii [TaxId: 354]} 93.53
d1h98a_77 Ferredoxin {Thermus thermophilus [TaxId: 274]} 93.21
d1iqza_81 Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1 92.91
d7fd1a_106 Ferredoxin {Azotobacter vinelandii [TaxId: 354]} 92.17
d1dura_55 Ferredoxin II {Peptostreptococcus asaccharolyticus 91.84
d3c7bb165 DsrB insert domain {Archaeoglobus fulgidus [TaxId: 91.7
d1nekb1132 Succinate dehydogenase {Escherichia coli [TaxId: 5 90.63
d2c42a5117 Pyruvate-ferredoxin oxidoreductase, PFOR, domain V 90.54
d1hfel285 Fe-only hydrogenase larger subunit, N-domain {Desu 89.18
d1xera_103 Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} 87.91
d1gtea5173 Dihydropyrimidine dehydrogenase, C-terminal domain 87.3
d1jb0c_80 Photosystem I iron-sulfur protein PsaC {Synechococ 86.9
d1rgva_80 Ferredoxin II {Thauera aromatica [TaxId: 59405]} 85.1
d2fug91154 NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus 84.95
d3c8ya383 Fe-only hydrogenase, second domain {Clostridium pa 80.17
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Dihydropyrimidine dehydrogenase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.45  E-value=0.00021  Score=63.87  Aligned_cols=41  Identities=17%  Similarity=0.255  Sum_probs=31.5

Q ss_pred             CCCCCCCccCCchhhcchhhhhhhhhcCCC-----------CcccccccCcc
Q 011872           59 YPAKDHCSRCGLCDTYYIAHVKDACAFLGD-----------GMSRIEGLETV   99 (475)
Q Consensus        59 ~~~~~lCtGCGaC~~iCp~~~~~a~~f~~~-----------G~~~c~~vCp~   99 (475)
                      +++.++|++||.|..+||...+.++.+..+           ||+.|..+||.
T Consensus       103 ~id~~~Ci~C~~C~~~Cp~~ai~~i~~~~~~~~~v~~~~C~gCg~C~~vCP~  154 (173)
T d1gtea5         103 VIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPI  154 (173)
T ss_dssp             EECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCEEECTTCCCCCHHHHHCSS
T ss_pred             EEEchhCCCchHHHHhhhhCCEEEEEecCCCceEechhhCCCcChhHhhCCC
Confidence            478999999999999999765444333222           68899999996
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} Back     information, alignment and structure
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]} Back     information, alignment and structure
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} Back     information, alignment and structure
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]} Back     information, alignment and structure
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} Back     information, alignment and structure
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Back     information, alignment and structure
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} Back     information, alignment and structure
>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]} Back     information, alignment and structure
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} Back     information, alignment and structure
>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} Back     information, alignment and structure
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} Back     information, alignment and structure
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure